RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7769
(355 letters)
>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 313
Score = 52.3 bits (124), Expect = 3e-08
Identities = 50/226 (22%), Positives = 88/226 (38%), Gaps = 25/226 (11%)
Query: 146 FNYYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLA 205
Y + +S+ P +AL+ +P + V DM AAPGGKT L L + + +
Sbjct: 96 GLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKT-SYLAQLMRNDGVIYAFDVDENRL 154
Query: 206 LNIRPYDTVLDIHALKLVKVGGSVVYST-------CSLSPIQNDGVVHMSLKRIWEETGC 258
R + L + + L + +P G +H + +R W T
Sbjct: 155 RETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMD 214
Query: 259 EIEIKHALK---------LVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIK 309
+I+ L+ ++K GG +VYSTCSL P +N+ V+ +L ++E+
Sbjct: 215 DIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDN------FDVELL 268
Query: 310 DLSQALRPLKSLFSFA-NINLSYGHLVQPHLPSNFGPMYFCKFDKI 354
L L + F + + + P + + K K+
Sbjct: 269 PLKYGEPALTNPFGIELSEEIKNARRLYPDV-HETSGFFIAKIRKL 313
>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId:
9606]}
Length = 293
Score = 50.5 bits (119), Expect = 1e-07
Identities = 49/275 (17%), Positives = 85/275 (30%), Gaps = 34/275 (12%)
Query: 101 RPSPEVDFKVVPETELHISPYL-QAFSFPSG-DISEFPSPKRGVTGVFNYYCMDGASLLP 158
R S D + + + P + + FP+ D+ E P + G + D AS LP
Sbjct: 32 RASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAG-----HLILQDRASCLP 86
Query: 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMD-GASLLPVLALNIRPYD----- 212
+ L+ P V+D CAAPG KT L + ++
Sbjct: 87 AMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC 146
Query: 213 ---TVLDIHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKH----- 264
D A+ V+ G+ L+ T + +
Sbjct: 147 CELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQ 206
Query: 265 -----ALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQALRPLK 319
+VYSTCSL +N+ VV +L++ + A P +
Sbjct: 207 QRALCHALTFPSLQRLVYSTCSLCQEENEDVVRDALQQ----NPGAFRLAPALPAW-PHR 261
Query: 320 SLFSFANINLSYGHLVQPHLPSNFGPMYFCKFDKI 354
L +F + P + + +++
Sbjct: 262 GLSTF--PGAEHCLRASPET-TLSSGFFVAVIERV 293
>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit
methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 284
Score = 47.0 bits (110), Expect = 1e-06
Identities = 32/165 (19%), Positives = 55/165 (33%), Gaps = 15/165 (9%)
Query: 148 YYCMDGASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYC------MDGASLL 201
D ++ + L + + +LD+CAAPGGKT L+ + +
Sbjct: 84 VTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVY 143
Query: 202 PVLALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGV--VHMSLKRIWEETGCE 259
L G +P GV H +K + +
Sbjct: 144 DNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIP 203
Query: 260 IEIK-------HALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKR 297
+ +K GG++VY+TCS+ P +N + L+R
Sbjct: 204 ELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQR 248
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 209
Score = 37.8 bits (87), Expect = 0.001
Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 17/165 (10%)
Query: 153 GASLLPVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYD 212
A +L L +R + VL + AA G + D + A+
Sbjct: 43 AAMILKGHRLKLRGDERVLYLGAASGTTVS----------HLADIVDEGIIYAVEYSAKP 92
Query: 213 TVLDIHALKLVKVGGSVVYSTCSL-SPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKV 271
+ ++ +++ V + + I ++ EI +A +K
Sbjct: 93 FEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKE 152
Query: 272 GGSVV---YSTCSLSPIQNDGVVHMSLKRIWEETGCEI-EIKDLS 312
G VV + S + + V LK + E +I + L
Sbjct: 153 KGEVVIMVKARSIDSTAEPEEVFKSVLKEM--EGDFKIVKHGSLM 195
>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 227
Score = 33.5 bits (76), Expect = 0.028
Identities = 25/172 (14%), Positives = 57/172 (33%), Gaps = 19/172 (11%)
Query: 148 YYCMDGASLL-PVLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLAL 206
GA+++ + I+P +VL + A G + + + +
Sbjct: 54 NRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWE---------GKIFGI 104
Query: 207 NIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIE----I 262
P + +V+ ++V + + + + I+E+ + I
Sbjct: 105 EFSPRVLR---ELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKILI 161
Query: 263 KHALKLVKVGGSVVYST--CSLSPIQNDGVVHMSLKRIWEETGCEIEIKDLS 312
+A +K GG + + S+ + V ++R E IE +L
Sbjct: 162 DNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIERLNLE 213
>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT)
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 186
Score = 31.7 bits (71), Expect = 0.076
Identities = 26/181 (14%), Positives = 52/181 (28%), Gaps = 31/181 (17%)
Query: 161 ALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDTVLDIHAL 220
D +D+ GG TL + Y + +N++ + ++ +
Sbjct: 28 LAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLM 87
Query: 221 KLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280
+ G + C + D V +E I +K GG ++ +
Sbjct: 88 E-----GDAPEALCKIPD--IDIAVVGGSGGELQEILRII-----KDKLKPGGRIIVTAI 135
Query: 281 SLSPIQNDGVVHMSLKRIWEETGCEIEIKDLSQA-LRPLKSLFSFANINLSYGHLVQPHL 339
L + G ++ I +L+ A R L G ++
Sbjct: 136 LLETKF-------EAMECLRDLGFDVNITELNIARGRALDR-----------GTMMVSRN 177
Query: 340 P 340
P
Sbjct: 178 P 178
>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus
jannaschii [TaxId: 2190]}
Length = 230
Score = 30.9 bits (69), Expect = 0.18
Identities = 24/155 (15%), Positives = 50/155 (32%), Gaps = 14/155 (9%)
Query: 162 LNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDTVLDIH-AL 220
+ I+ +L + A+ G T + + V A+ P +
Sbjct: 70 MPIKRDSKILYLGASAGT-TPSHVADIADKG---------IVYAIEYAPRIMRELLDACA 119
Query: 221 KLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSVVYSTC 280
+ + + + V + + + + EI IK+A +K GG + +
Sbjct: 120 ERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIK 179
Query: 281 SLSPIQNDG--VVHMSLKRIWEETGCEI-EIKDLS 312
+ S + K I E G +I + D+
Sbjct: 180 ARSIDVTKDPKEIFKEQKEILEAGGFKIVDEVDIE 214
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 30.9 bits (69), Expect = 0.21
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 159 VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPD 191
+ ++I P DTVL+ + GG +L + +
Sbjct: 91 LSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQ 123
>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle
and C-terminal domains {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 324
Score = 30.2 bits (67), Expect = 0.33
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 262 IKHALKLVKVGGSVVYSTCS 281
L LVK GG +V +CS
Sbjct: 246 NFAGLNLVKDGGILVTCSCS 265
Score = 30.2 bits (67), Expect = 0.37
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 189 YPDYYCMDGASLLPV---LALNIRPYDTVLDIHALKLVKVGGSVVYSTCS 235
D +D + + L +R Y V L LVK GG +V +CS
Sbjct: 217 KFDIVVLDPPAFVQHEKDLKAGLRAYFNVNF-AGLNLVKDGGILVTCSCS 265
>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 260
Score = 30.1 bits (67), Expect = 0.38
Identities = 31/153 (20%), Positives = 53/153 (34%), Gaps = 22/153 (14%)
Query: 160 LALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPYDTVLDIHA 219
+A +P + V+DM A G +L + G + V+A+ PY +
Sbjct: 101 MAKVAKPDELVVDMFAGIGHLSL---------PIAVYGKAK--VIAIEKDPYTFKFLVEN 149
Query: 220 LKLVKVGGSVV----YSTCSLSPIQNDGVVHMSLKRIWEETGCEIEIKHALKLVKVGGSV 275
+ L KV + + D ++ + R E I AL + K G +
Sbjct: 150 IHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVVRTHE------FIPKALSIAKDGAII 203
Query: 276 VYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEI 308
Y + KRI +E G ++E
Sbjct: 204 HYHNTVPEKLMPREPFET-FKRITKEYGYDVEK 235
>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase
domain {Thermotoga maritima [TaxId: 2336]}
Length = 192
Score = 29.4 bits (65), Expect = 0.42
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 6/35 (17%)
Query: 158 PVL------ALNIRPYDTVLDMCAAPGGKTLVALQ 186
PV+ L +LD GG + L+
Sbjct: 9 PVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILE 43
>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle
and C-terminal domains {Thermus thermophilus [TaxId:
274]}
Length = 318
Score = 28.7 bits (63), Expect = 1.2
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 262 IKHALKLVKVGGSVVYSTCS 281
A+KL+K GG + ++CS
Sbjct: 244 NLRAIKLLKEGGILATASCS 263
Score = 27.1 bits (59), Expect = 3.5
Identities = 8/21 (38%), Positives = 16/21 (76%)
Query: 215 LDIHALKLVKVGGSVVYSTCS 235
+++ A+KL+K GG + ++CS
Sbjct: 243 VNLRAIKLLKEGGILATASCS 263
>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol
dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}
Length = 174
Score = 27.6 bits (60), Expect = 1.7
Identities = 15/135 (11%), Positives = 34/135 (25%), Gaps = 22/135 (16%)
Query: 151 MDGASLLP---------VLALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLL 201
++ A ++ +I +V+ + G +A L +
Sbjct: 3 LENAVMITDMMTTGFHGAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIG----- 57
Query: 202 PVLALNIRPYDTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIE 261
+ A + + + R+ G
Sbjct: 58 -------VGSRPICVEAAKFYGATDILNYKNGHIEDQVMKL-TNGKGVDRVIMAGGGSET 109
Query: 262 IKHALKLVKVGGSVV 276
+ A+K+VK GG +
Sbjct: 110 LSQAVKMVKPGGIIS 124
>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase
domain {Thermus thermophilus [TaxId: 274]}
Length = 182
Score = 27.4 bits (60), Expect = 1.8
Identities = 23/159 (14%), Positives = 44/159 (27%), Gaps = 28/159 (17%)
Query: 158 PVL------ALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMDGASLLPVLALNIRPY 211
PVL L +RP +D G + +D A +
Sbjct: 4 PVLYQEALDLLAVRPGGVYVDATLGGAGHAR-GILERGGRVIGLDQDPEAVARAKGLHLP 62
Query: 212 ----------DTVLDIHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIE 261
+ AL + +V G + + +S D E +
Sbjct: 63 GLTVVQGNFRHLKRHLAALGVERVDG--ILADLGVSSFHLDDPSD-------ELNALKEF 113
Query: 262 IKHALKLVKVGGSVVYSTCSLSP--IQNDGVVHMSLKRI 298
++ A +++ GG +V + + LK +
Sbjct: 114 LEQAAEVLAPGGRLVVIAFHSLEDRVVKRFLRESGLKVL 152
>d2p41a1 c.66.1.25 (A:8-264) An RNA cap
(nucleoside-2'-O-)-methyltransferase domain of RNA
polymerase NS5 {Dengue virus 2 [TaxId: 11060]}
Length = 257
Score = 28.0 bits (62), Expect = 1.9
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 163 NIRPYDTVLDMCAAPGGKTLVALQ 186
+ P V+D+ GG +
Sbjct: 63 LVTPEGKVVDLGCGRGGWSYYCGG 86
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 122
Score = 26.7 bits (59), Expect = 2.0
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 247 MSLKRIWEETGCEIEIK 263
+LK I +E +I I+
Sbjct: 29 NTLKNIEKECNAKIMIR 45
Score = 26.7 bits (59), Expect = 2.0
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 293 MSLKRIWEETGCEIEIK 309
+LK I +E +I I+
Sbjct: 29 NTLKNIEKECNAKIMIR 45
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine
pentaphosphate synthase (PNPase/GPSI), domain 6
{Streptomyces antibioticus [TaxId: 1890]}
Length = 54
Score = 25.0 bits (55), Expect = 2.9
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 295 LKRIWEETGCEIEIKD 310
+ +I E+TG EI I+D
Sbjct: 25 INQIQEDTGAEITIED 40
>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli
[TaxId: 562]}
Length = 180
Score = 26.7 bits (58), Expect = 3.2
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 164 IRPYDTVLDMCAAPGGKTLVALQTLYPDYYCM 195
+P TV+D+ AAPGG + + + +
Sbjct: 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRII 51
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 134
Score = 26.3 bits (58), Expect = 3.4
Identities = 6/17 (35%), Positives = 13/17 (76%)
Query: 247 MSLKRIWEETGCEIEIK 263
++ K++ ETGC+I ++
Sbjct: 28 LTAKQLEAETGCKIMVR 44
Score = 26.3 bits (58), Expect = 3.4
Identities = 6/17 (35%), Positives = 13/17 (76%)
Query: 293 MSLKRIWEETGCEIEIK 309
++ K++ ETGC+I ++
Sbjct: 28 LTAKQLEAETGCKIMVR 44
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis
[TaxId: 1423]}
Length = 234
Score = 26.8 bits (58), Expect = 3.4
Identities = 9/36 (25%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 161 ALNIRPYDTVLDMCAAPGGKTLVALQTLYPDYYCMD 196
R VLD+ A G L A + +D
Sbjct: 11 TAECRAEHRVLDIGAGAGHTAL-AFSPYVQECIGVD 45
>d1t6ca1 c.55.1.8 (A:7-132) Exopolyphosphatase Ppx {Aquifex aeolicus
[TaxId: 63363]}
Length = 126
Score = 26.1 bits (57), Expect = 4.0
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 261 EIKHALKLVKVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEI 308
E K + KV +T ++ +N L+R+ E G +E+
Sbjct: 63 EYKKLIDEFKVERVKAVATEAIRRAKNAEEF---LERVKREVGLVVEV 107
Score = 24.9 bits (54), Expect = 8.8
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 224 KVGGSVVYSTCSLSPIQNDGVVHMSLKRIWEETGCEIEI 262
KV +T ++ +N L+R+ E G +E+
Sbjct: 72 KVERVKAVATEAIRRAKNAEEF---LERVKREVGLVVEV 107
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1,
ECR1 {Aeropyrum pernix [TaxId: 56636]}
Length = 87
Score = 25.4 bits (56), Expect = 4.0
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 295 LKRIWEETGCEIEIKD 310
LK + E+T C+I +
Sbjct: 23 LKTLEEKTECKIFVAR 38
>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle
and C-terminal domains {Streptococcus mutans [TaxId:
1309]}
Length = 317
Score = 26.7 bits (58), Expect = 4.2
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 262 IKHALKLVKVGGSVVYSTCS 281
I+ L+++ G ++ ST +
Sbjct: 246 IRQGLEILSENGLIIASTNA 265
Score = 26.7 bits (58), Expect = 4.5
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 215 LDIHALKLVKVGGSVVYSTCS 235
L L+++ G ++ ST +
Sbjct: 245 LIRQGLEILSENGLIIASTNA 265
>d1zq1c3 d.128.1.5 (C:5-276,C:408-456) Glutamyl-tRNA(Gln)
amidotransferase subunit E, GatE {Pyrococcus abyssi
[TaxId: 29292]}
Length = 321
Score = 26.7 bits (58), Expect = 4.2
Identities = 9/87 (10%), Positives = 21/87 (24%), Gaps = 6/87 (6%)
Query: 113 ETELHISPYLQAFSFPSGDISEFPSPKRGVTGVFNYY------CMDGASLLPVLALNIRP 166
+ E L+ G+I + V+ Y + P +
Sbjct: 37 KVEFTFQRRLRPTMSELGEIDPAALEEFKKGRVYVYEGNYELTDLVYMDEEPPRGPDREA 96
Query: 167 YDTVLDMCAAPGGKTLVALQTLYPDYY 193
+ L + K + + +
Sbjct: 97 LEVALQIAYLLNAKPVDEVYYMRKIVI 123
>d1d2ta_ a.111.1.1 (A:) Bacterial acid phosphatase {Escherichia
blattae [TaxId: 563]}
Length = 224
Score = 25.5 bits (55), Expect = 9.7
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 99 YYRPSPEVDFKVVPETELHISPYLQAFSFPSG 130
Y R P + V + S+PSG
Sbjct: 112 YMRIRPFAFYGVSTCNTTEQDKLSKNGSYPSG 143
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.399
Gapped
Lambda K H
0.267 0.0683 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,340,188
Number of extensions: 62449
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 34
Length of query: 355
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 269
Effective length of database: 1,226,816
Effective search space: 330013504
Effective search space used: 330013504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)