Query psy7771
Match_columns 193
No_of_seqs 11 out of 13
Neff 1.2
Searched_HMMs 29240
Date Fri Aug 16 18:26:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7771.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7771hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jdm_A Sarcolipin; helix, memb 38.1 24 0.00082 22.0 2.5 17 3-19 8-24 (31)
2 1fjk_A Cardiac phospholamban; 32.9 31 0.0011 23.5 2.6 14 3-16 31-44 (52)
3 1yod_A Water-solublized phosph 21.0 82 0.0028 19.5 2.8 14 3-16 10-23 (30)
4 3dax_A Cytochrome P450 7A1; ch 16.9 65 0.0022 24.6 2.0 11 113-123 386-396 (491)
5 3tyw_A Putative cytochrome P45 15.7 1.1E+02 0.0038 23.6 3.0 24 102-128 329-352 (417)
6 2py6_A Methyltransferase FKBM; 14.1 57 0.002 26.7 1.1 14 165-178 227-240 (409)
7 3ivy_A Cytochrome P450 CYP125; 14.0 1.2E+02 0.0043 23.6 3.0 24 101-127 344-367 (433)
8 2bn5_A PSI; nuclear protein, s 13.5 20 0.00068 22.6 -1.4 12 66-77 3-14 (33)
9 3tbg_A Cytochrome P450 2D6; mo 12.6 64 0.0022 24.4 0.9 17 104-123 383-399 (479)
10 2qn4_A RASI, alpha-amylase/sub 12.5 63 0.0021 25.3 0.9 22 33-54 25-49 (200)
No 1
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=38.12 E-value=24 Score=22.02 Aligned_cols=17 Identities=29% Similarity=0.620 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy7771 3 LLINLCTILLTLTTLML 19 (193)
Q Consensus 3 llinlctilltlttlml 19 (193)
|.+|.|.||+++....+
T Consensus 8 Lf~NFt~vLI~vlLi~l 24 (31)
T 1jdm_A 8 LFLNFTIVLITVILMWL 24 (31)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78999999988765544
No 2
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=32.90 E-value=31 Score=23.50 Aligned_cols=14 Identities=50% Similarity=0.857 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHH
Q psy7771 3 LLINLCTILLTLTT 16 (193)
Q Consensus 3 llinlctilltltt 16 (193)
|.+|.|.||+.|..
T Consensus 31 lfvnfcliliclll 44 (52)
T 1fjk_A 31 LFINFCLILIFLLL 44 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 68999999877654
No 3
>1yod_A Water-solublized phospholamban; protein design, water-soluble, de novo protein; 1.80A {Synthetic}
Probab=20.96 E-value=82 Score=19.46 Aligned_cols=14 Identities=29% Similarity=0.332 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHH
Q psy7771 3 LLINLCTILLTLTT 16 (193)
Q Consensus 3 llinlctilltltt 16 (193)
|.+|.|.|++.+..
T Consensus 10 LfvNfcLilICllL 23 (30)
T 1yod_A 10 LYINRCLREICQEL 23 (30)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67999998876643
No 4
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=16.89 E-value=65 Score=24.61 Aligned_cols=11 Identities=36% Similarity=0.588 Sum_probs=7.6
Q ss_pred CCCCCCCCCCC
Q psy7771 113 DPSTFDPANFE 123 (193)
Q Consensus 113 dpstfdpanfe 123 (193)
||..|||+.|.
T Consensus 386 dp~~F~PeRfl 396 (491)
T 3dax_A 386 DPLTFKYDRYL 396 (491)
T ss_dssp STTSCCTTTTB
T ss_pred CHHHcCCcccc
Confidence 56677777774
No 5
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET: HEM; 2.90A {Streptomyces coelicolor} PDB: 4fxb_A*
Probab=15.70 E-value=1.1e+02 Score=23.56 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=14.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy7771 102 NPNPAAFKPSFDPSTFDPANFEPSYEP 128 (193)
Q Consensus 102 npnpaafkpsfdpstfdpanfepsyep 128 (193)
|-+|..|. ||..|||..|...|-|
T Consensus 329 ~rdp~~~~---dP~~F~PeR~~~~~l~ 352 (417)
T 3tyw_A 329 NHDPEQFD---DPERVDFHRTDNHHVA 352 (417)
T ss_dssp TTCTTTSS---STTSCCTTCSCCCCCT
T ss_pred cCChhhcC---CccccCCCCCCCCCCC
Confidence 44555562 6778888887544443
No 6
>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56
Probab=14.08 E-value=57 Score=26.69 Aligned_cols=14 Identities=36% Similarity=0.589 Sum_probs=11.3
Q ss_pred ccceeecccccCCC
Q psy7771 165 HDTYVDFGAHTGHH 178 (193)
Q Consensus 165 ~D~YVDfGahTG~~ 178 (193)
.+..||+||+.|..
T Consensus 227 ~~~viDvGAn~G~~ 240 (409)
T 2py6_A 227 SEKMVDCGASIGES 240 (409)
T ss_dssp SCEEEEETCTTSHH
T ss_pred CCEEEECCCCcCHH
Confidence 35699999999864
No 7
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron, metal-binding, oxidoreductase; HET: HEM; 1.35A {Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A* 3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Probab=14.00 E-value=1.2e+02 Score=23.56 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=14.5
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy7771 101 YNPNPAAFKPSFDPSTFDPANFEPSYE 127 (193)
Q Consensus 101 ynpnpaafkpsfdpstfdpanfepsye 127 (193)
-|-+|..| | ||..|||..|...+-
T Consensus 344 ~~rdp~~f-~--dp~~F~p~R~~~~~l 367 (433)
T 3ivy_A 344 ANFDEEVF-Q--DPFTFNILRNPNPHV 367 (433)
T ss_dssp HTTCTTTS-S--STTSCCTTCCSCCCC
T ss_pred hcCCchhC-C--CcCccCCCCCCCCCC
Confidence 34556666 2 777777777744433
No 8
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=13.48 E-value=20 Score=22.59 Aligned_cols=12 Identities=67% Similarity=0.988 Sum_probs=10.2
Q ss_pred ccccccccccCC
Q psy7771 66 SYSHQTAEYYRP 77 (193)
Q Consensus 66 syshqtaeyyrp 77 (193)
.||-|-+||||-
T Consensus 3 DYSaQW~eYYrs 14 (33)
T 2bn5_A 3 DYSAQWAEYYRS 14 (33)
T ss_dssp TTHHHHHHHHHH
T ss_pred chHHHHHHHHHH
Confidence 689999999983
No 9
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=12.57 E-value=64 Score=24.38 Aligned_cols=17 Identities=29% Similarity=0.643 Sum_probs=10.7
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q psy7771 104 NPAAFKPSFDPSTFDPANFE 123 (193)
Q Consensus 104 npaafkpsfdpstfdpanfe 123 (193)
||..| | ||..|||+.|.
T Consensus 383 d~~~~-~--dP~~F~PeRfl 399 (479)
T 3tbg_A 383 DEAVW-E--KPFRFHPEHFL 399 (479)
T ss_dssp CTTTS-S--STTSCCGGGGB
T ss_pred ChhhC-C--CccccCccccC
Confidence 44455 2 67777777774
No 10
>2qn4_A RASI, alpha-amylase/subtilisin inhibitor; amylase inhibitor, alpha- amylase inhibitor, protease inhibitor, serine protease inhibitor; 1.80A {Oryza sativa subsp}
Probab=12.54 E-value=63 Score=25.29 Aligned_cols=22 Identities=23% Similarity=0.523 Sum_probs=17.1
Q ss_pred CCCCCCCCCccccc---ccCchhhh
Q psy7771 33 NPRYSESTHPVRQN---YISPSLRT 54 (193)
Q Consensus 33 nprysesthpvrqn---yispslrt 54 (193)
.|-+.-.-+|||-+ ||-|.+|-
T Consensus 25 ~pVlD~~G~~l~~G~~YyI~p~~~g 49 (200)
T 2qn4_A 25 PPVYDTEGHELSADGSYYVLPASPG 49 (200)
T ss_dssp CBCBCTTSCBCBTTSCEEEEESSTT
T ss_pred CceEeCCCCCCcCCCcEEEEeCccC
Confidence 56677788999988 99887653
Done!