Your job contains 1 sequence.
>psy7771
MSLLINLCTILLTLTTLMLQAEALPQRQPLYQNPRYSESTHPVRQNYISPSLRTTRRAAK
PNQPTSYSHQTAEYYRPNYQPSGQNQYYDPSYQPSNYQESYNPNPAAFKPSFDPSTFDPA
NFEPSYEPSSFQPTALKKAPLPSKVTDHDNSESRLERQSGGGGGHDTYVDFGAHTGHHGS
FGWYADFPAHKDA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy7771
(193 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q25460 - symbol:FP1 "Adhesive plaque matrix pro... 136 5.9e-08 1
UNIPROTKB|F1PGS0 - symbol:POLR2A "DNA-directed RNA polyme... 137 1.2e-07 1
UNIPROTKB|G3MZY8 - symbol:POLR2A "DNA-directed RNA polyme... 129 8.5e-07 1
UNIPROTKB|P11414 - symbol:POLR2A "DNA-directed RNA polyme... 122 7.9e-06 1
UNIPROTKB|I3LQ53 - symbol:I3LQ53 "Uncharacterized protein... 122 9.8e-06 1
FB|FBgn0003277 - symbol:RpII215 "RNA polymerase II 215kD ... 125 1.3e-05 1
ZFIN|ZDB-GENE-041008-78 - symbol:polr2a "polymerase (RNA)... 123 3.3e-05 1
UNIPROTKB|P24928 - symbol:POLR2A "DNA-directed RNA polyme... 122 4.7e-05 1
RGD|1587326 - symbol:Polr2a "polymerase (RNA) II (DNA dir... 122 4.7e-05 1
MGI|MGI:98086 - symbol:Polr2a "polymerase (RNA) II (DNA d... 122 4.7e-05 1
DICTYBASE|DDB_G0279193 - symbol:rpb1 "RNA polymerase II c... 120 8.6e-05 1
WB|WBGene00009787 - symbol:F46F2.3 species:6239 "Caenorha... 98 0.00016 1
SGD|S000002299 - symbol:RPO21 "RNA polymerase II largest ... 116 0.00032 1
WB|WBGene00000123 - symbol:ama-1 species:6239 "Caenorhabd... 116 0.00034 1
UNIPROTKB|P16356 - symbol:ama-1 "DNA-directed RNA polymer... 116 0.00034 1
POMBASE|SPBC28F2.12 - symbol:rpb1 "RNA polymerase II larg... 114 0.00062 1
TAIR|locus:2064607 - symbol:PLDBETA1 "phospholipase D bet... 112 0.00067 1
TAIR|locus:2058203 - symbol:FPA species:3702 "Arabidopsis... 111 0.00072 1
>UNIPROTKB|Q25460 [details] [associations]
symbol:FP1 "Adhesive plaque matrix protein" species:6550
"Mytilus edulis" [GO:0005576 "extracellular region" evidence=IDA]
InterPro:IPR002964 PRINTS:PR01216 GO:GO:0005576 EMBL:X54422
PIR:S23760 ProteinModelPortal:Q25460 Uniprot:Q25460
Length = 875
Score = 136 (52.9 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 39/126 (30%), Positives = 65/126 (51%)
Query: 22 EALPQRQPLYQ-NPRY-SESTHPVRQNYISPSLRTTRRAAKPNQPTSYSHQTAEYYRPNY 79
+A P P Y+ P Y ++ T+P PS + +A KP+ P +Y +++ Y +Y
Sbjct: 440 KAKPSYPPTYKAKPTYKAKPTYPSTYK-AKPSYPASYKA-KPSYPPTYKSKSS--YPSSY 495
Query: 80 QPSGQNQYYDPSYQPS-NYQESYNPNPAAFKPSFDPSTFDPANFEPSYEPS-SFQPTALK 137
+P + Y P+Y+P Y+ +Y P P+ + PS+ P T P P+Y+P S+ PT
Sbjct: 496 KPK---KTYPPTYKPKLTYKPTYKPKPS-YPPSYKPKTTYP----PTYKPKISYPPTYKA 547
Query: 138 KAPLPS 143
K P+
Sbjct: 548 KPSYPA 553
Score = 130 (50.8 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 40/132 (30%), Positives = 60/132 (45%)
Query: 22 EALPQRQPLYQ-NPRYSESTHPVRQNY-ISPSLRTTRRA-----AKPNQPTSYSHQTAEY 74
+A P P Y+ P Y T+ + Y P+ +T +A AKP P +Y + +
Sbjct: 708 KAKPSYPPTYKAKPSYPP-TYKAKPTYKAKPTYPSTYKAKPTYKAKPTYPPTYKAKPS-- 764
Query: 75 YRPNYQPSGQNQYYDPSYQPSN-YQESYNPN---PAAFKPSFD-PSTFDPA-NFEPSYEP 128
Y P Y+P Y P+Y+ + Y SY P P +KP P T+ P ++ PSY+P
Sbjct: 765 YPPTYKPKPS---YPPTYKSKSIYPSSYKPKKTYPPTYKPKLTYPPTYKPKPSYPPSYKP 821
Query: 129 SSFQPTALKKAP 140
P+ K P
Sbjct: 822 KITYPSTYKLKP 833
Score = 125 (49.1 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 37/132 (28%), Positives = 64/132 (48%)
Query: 22 EALPQRQPLYQ-NPRYSESTHPVRQNYISPSLRTTRR-AAKPNQPTSYSHQTAEYYRPNY 79
+A P P Y+ P Y T+ + +Y P+ + AKP P++Y + +P Y
Sbjct: 698 KAKPSYPPTYKAKPSYPP-TYKAKPSY-PPTYKAKPTYKAKPTYPSTYKAKPTYKAKPTY 755
Query: 80 QPSGQNQ-YYDPSYQPS-NYQESYNPN---PAAFKPSFD-PSTFDPA-NFEPSYEPS-SF 131
P+ + + Y P+Y+P +Y +Y P+++KP P T+ P + P+Y+P S+
Sbjct: 756 PPTYKAKPSYPPTYKPKPSYPPTYKSKSIYPSSYKPKKTYPPTYKPKLTYPPTYKPKPSY 815
Query: 132 QPTALKKAPLPS 143
P+ K PS
Sbjct: 816 PPSYKPKITYPS 827
Score = 114 (45.2 bits), Expect = 0.00028, P = 0.00028
Identities = 43/142 (30%), Positives = 66/142 (46%)
Query: 22 EALPQRQPLYQ-NPRY-SESTHPVRQNYISPSLRTTRRAAKPNQPTSYSHQTAEYYRPNY 79
+A P P Y+ P Y ++ T+P PS + +A KP+ P +Y + +P Y
Sbjct: 404 KAKPSYPPTYKAKPTYKAKPTYPSTYK-AKPSYPPSYKA-KPSYPPTYKAKPTYKAKPTY 461
Query: 80 ------QPSGQNQYY-DPSYQP-----SNYQESYNPN---PAAFKP--SFDPSTFDPA-N 121
+PS Y PSY P S+Y SY P P +KP ++ P T+ P +
Sbjct: 462 PSTYKAKPSYPASYKAKPSYPPTYKSKSSYPSSYKPKKTYPPTYKPKLTYKP-TYKPKPS 520
Query: 122 FEPSYEP-SSFQPTALKKAPLP 142
+ PSY+P +++ PT K P
Sbjct: 521 YPPSYKPKTTYPPTYKPKISYP 542
Score = 110 (43.8 bits), Expect = 0.00092, P = 0.00092
Identities = 38/128 (29%), Positives = 60/128 (46%)
Query: 22 EALPQRQPLYQ-NPRYSESTHPVRQNYISPSLRTTRR-AAKPNQPTSYSHQTAEYYRPNY 79
+A P P Y+ P Y T+ + +Y P+ + AKP P++Y + + Y P Y
Sbjct: 556 KAKPSYPPTYKAKPSYPP-TYKAKPSY-PPTYKAKPSYKAKPTYPSTYKAKPS--YPPTY 611
Query: 80 Q--PSGQNQYY-DPSYQPSNYQESYNPNPAAFKPSFDPSTFDPA-NFEPSYEPS-SFQPT 134
+ PS Y PSY P+ + P+ KPS+ P T+ P ++ P+Y+ S+ PT
Sbjct: 612 KAKPSYPPTYKAKPSYPPTYKAKPTYPSTYKAKPSYPP-TYKPKISYPPTYKAKPSYPPT 670
Query: 135 ALKKAPLP 142
K P
Sbjct: 671 YKAKPSYP 678
>UNIPROTKB|F1PGS0 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:AAEX03003616
EMBL:AAEX03003617 Ensembl:ENSCAFT00000026237 Uniprot:F1PGS0
Length = 1969
Score = 137 (53.3 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 44/127 (34%), Positives = 61/127 (48%)
Query: 29 PLYQ--NPRYSEST---HPVRQNYIS--PSLRTTRRAAKPNQPTSYSHQTAEY--YRPNY 79
P Y +P YS ++ P NY P+ T + P P SYS + Y PNY
Sbjct: 1725 PSYSPTSPSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSP-SYSPTSPNYTPMSPNY 1783
Query: 80 QPSGQNQYYDPSYQPSNYQESYNPNPAAFKPSFDPSTFDPANFEPSYEPSS--FQPTALK 137
P+ N PSY P++ SY+P+ + P P T+ P++ PSY PSS + PT+ K
Sbjct: 1784 SPTSPNLQLSPSYSPTS--PSYSPSSPRYTPQ-SP-TYTPSS--PSYSPSSPSYSPTSPK 1837
Query: 138 KAPL-PS 143
P PS
Sbjct: 1838 YTPTSPS 1844
Score = 123 (48.4 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 45/140 (32%), Positives = 63/140 (45%)
Query: 29 PLYQ--NPRYSEST---HPVRQNYI--SPSLRTTRRAAKPNQPTSYSHQTAEYYRPNYQP 81
P Y +P YS ++ P R NY SPS T + P P +Y+ + PNY P
Sbjct: 1732 PSYSPTSPSYSPTSPNYSPSRPNYTPTSPSYSPTSPSYSPTSP-NYTPMS-----PNYSP 1785
Query: 82 SGQNQYYDPSYQPSN--YQES---YNPNPAAF---KPSFDPST--FDPAN-----FEPSY 126
+ N PSY P++ Y S Y P + PS+ PS+ + P + PSY
Sbjct: 1786 TSPNLQLSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSY 1845
Query: 127 EPSS--FQPTALKKAPLPSK 144
PSS + PT+ K +P K
Sbjct: 1846 SPSSPEYTPTSPKYSPTSPK 1865
Score = 113 (44.8 bits), Expect = 0.00094, P = 0.00094
Identities = 44/143 (30%), Positives = 62/143 (43%)
Query: 29 PLYQ--NPRYSEST---HPVRQNY--ISPSLRTTRRAAKPNQPTSYSHQTAEYY--RPNY 79
P Y +P YS ++ P +Y SPS T + P P SYS + Y PNY
Sbjct: 1690 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPNY 1748
Query: 80 QPSGQNQY-YDPSYQPSNYQES-YNPNPAAFKPSFDPSTFDPANFEPSYEPSS--FQPTA 135
PS N PSY P++ S +PN P++ P T PSY P+S + P++
Sbjct: 1749 SPSRPNYTPTSPSYSPTSPSYSPTSPNYTPMSPNYSP-TSPNLQLSPSYSPTSPSYSPSS 1807
Query: 136 LKKAP-----LPSKVTDHDNSES 153
+ P PS + +S S
Sbjct: 1808 PRYTPQSPTYTPSSPSYSPSSPS 1830
>UNIPROTKB|G3MZY8 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:DAAA02048777
EMBL:DAAA02048778 EMBL:DAAA02048779 EMBL:DAAA02048780
EMBL:DAAA02048781 Ensembl:ENSBTAT00000064788 Uniprot:G3MZY8
Length = 1970
Score = 129 (50.5 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 44/128 (34%), Positives = 62/128 (48%)
Query: 29 PLYQ--NPRYSEST---HPVRQNY--ISPSLRTTRRAAKPNQPTSYSHQTAEYY--RPNY 79
P Y +P YS ++ P NY SP+ T + P P SYS + Y PNY
Sbjct: 1726 PSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSP-SYSPTSPNYTPTSPNY 1784
Query: 80 QPSGQN-QYYDPSYQPSNYQESYNPNPAAFKPSFDPSTFDPANFEPSYEPSS--FQPTAL 136
P+ + PSY P++ SY+P+ + P P T+ P++ PSY PSS + PT+
Sbjct: 1785 SPTSPSYSLTSPSYSPTS--PSYSPSSPRYTPQ-SP-TYTPSS--PSYSPSSPSYSPTSP 1838
Query: 137 KKAPL-PS 143
K P PS
Sbjct: 1839 KYTPASPS 1846
Score = 123 (48.4 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 44/132 (33%), Positives = 64/132 (48%)
Query: 25 PQRQPLYQ--NPRYSEST---HPVRQNY--ISPSLRTTRRAAKPNQPTSYSHQTAEYY-- 75
PQ P Y +P YS ++ P NY SPS T + P P SYS + Y
Sbjct: 1611 PQ-SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPT 1668
Query: 76 RPNYQPSGQNQY-YDPSYQPSNYQESYNPNPAAFKPSFDPSTFDPANFEPSYEPSS--FQ 132
P+Y P+ + PSY P++ SY+P ++ P+ PS + P + PSY P+S +
Sbjct: 1669 SPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPT-SPS-YSPTS--PSYSPTSPSYS 1722
Query: 133 PTALKKAPL-PS 143
PT+ +P PS
Sbjct: 1723 PTSPSYSPTSPS 1734
Score = 114 (45.2 bits), Expect = 0.00070, P = 0.00070
Identities = 36/119 (30%), Positives = 59/119 (49%)
Query: 29 PLYQ--NPRYSESTHPVRQNYISPSLRTTRRAAKPNQPTSYSHQTAEYY--RPNYQPSGQ 84
P Y +P YS S+ P R SP+ + + P+ P SYS + +Y P+Y PS
Sbjct: 1796 PSYSPTSPSYSPSS-P-RYTPQSPTYTPSSPSYSPSSP-SYSPTSPKYTPASPSYSPSSP 1852
Query: 85 NQYYDPSYQPSNYQES-YNPNPAAFKPSFDPSTFDPANFEPSYEPSS--FQPTALKKAP 140
P Y P++ + S +P + P++ P+T + P+Y P+S + PT+ K +P
Sbjct: 1853 EYTPSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSP 1911
>UNIPROTKB|P11414 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase II subunit RPB1"
species:10029 "Cricetulus griseus" [GO:0005634 "nucleus"
evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0006468 "protein
phosphorylation" evidence=ISS] [GO:0004672 "protein kinase
activity" evidence=ISS] InterPro:IPR000684 Pfam:PF05001
PROSITE:PS00115 GO:GO:0003677 GO:GO:0006468 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 EMBL:M19538 PIR:A27677
ProteinModelPortal:P11414 Uniprot:P11414
Length = 467
Score = 122 (48.0 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 43/135 (31%), Positives = 64/135 (47%)
Query: 25 PQRQPLYQ--NPRYSEST---HPVRQNY--ISPSLRTTRRAAKPNQPTSYSHQTAEYY-- 75
PQ P Y +P YS ++ P NY SPS T + P P SYS + Y
Sbjct: 107 PQ-SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPT 164
Query: 76 RPNYQPSGQNQY-YDPSYQPSNYQESYNPNPAAFKP---SFDPSTFDPANFEPSYEPSS- 130
P+Y P+ + PSY P++ SY+P ++ P S+ P++ + PSY P+S
Sbjct: 165 SPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 222
Query: 131 -FQPTALKKAPL-PS 143
+ PT+ +P PS
Sbjct: 223 SYSPTSPSYSPTSPS 237
Score = 120 (47.3 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 43/137 (31%), Positives = 62/137 (45%)
Query: 29 PLYQ--NPRYSEST---HPVRQNY--ISPSLRTTRRAAKPNQPTSYSHQTAEYY--RPNY 79
P Y +P YS ++ P +Y SPS T + P P SYS + Y PNY
Sbjct: 194 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPNYSPTSPNY 252
Query: 80 QPSGQNQY-YDPSYQPS--NYQESYNPNPAAFKPSFDPSTFDPANFEPSYEPSSFQPTAL 136
P+ + PSY P+ NY + +PN + PS+ P++ + PSY PSS + T
Sbjct: 253 TPTSPSYSPTSPSYSPTSPNYTPT-SPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQ 311
Query: 137 KKAPLPSKVTDHDNSES 153
PS + +S S
Sbjct: 312 SPTYTPSSPSYSPSSPS 328
Score = 115 (45.5 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 40/122 (32%), Positives = 57/122 (46%)
Query: 33 NPRY---SESTHPVRQNY--ISPSLRTTRRAAKPNQPTSYSHQTAEYY--RPNYQPSGQN 85
+P Y S S P +Y SP+ T P P SYS + Y P+Y PS
Sbjct: 249 SPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSP-SYSPTSPSYSPTSPSYSPSSPR 307
Query: 86 QY-YDPSYQPSNYQESYNPNPAAFKPSFDPSTFDPANFEPSYEPSS--FQPTALKKAPLP 142
P+Y PS+ SY+P+ ++ P+ P + P + PSY PSS + PT+ K +P
Sbjct: 308 YTPQSPTYTPSS--PSYSPSSPSYSPT-SPK-YTPTS--PSYSPSSPEYTPTSPKYSPTS 361
Query: 143 SK 144
K
Sbjct: 362 PK 363
Score = 111 (44.1 bits), Expect = 0.00030, P = 0.00030
Identities = 33/101 (32%), Positives = 52/101 (51%)
Query: 48 ISPSLRTTRRAAKPNQPTSYSHQTAEYY--RPNYQPSGQNQYYDPSYQPSNYQESYNPNP 105
+SPS T A +P P Y+ Q+ Y P+Y P+ PSY P++ +Y+P
Sbjct: 86 MSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTS------PSYSPTS--PNYSPTS 137
Query: 106 AAFKPSFDPSTFDPANFEPSYEPSS--FQPTALKKAPL-PS 143
++ P+ PS + P + PSY P+S + PT+ +P PS
Sbjct: 138 PSYSPT-SPS-YSPTS--PSYSPTSPSYSPTSPSYSPTSPS 174
Score = 107 (42.7 bits), Expect = 0.00098, P = 0.00098
Identities = 37/121 (30%), Positives = 61/121 (50%)
Query: 29 PLYQ--NPRYSESTHPVRQNYISPSLRTTRRAAKPNQPTSYSHQTAEYY--RPNYQPSGQ 84
P Y +P YS S+ P R SP+ + + P+ P SYS + +Y P+Y PS
Sbjct: 292 PSYSPTSPSYSPSS-P-RYTPQSPTYTPSSPSYSPSSP-SYSPTSPKYTPTSPSYSPSSP 348
Query: 85 NQYY--DPSYQPSNYQES-YNPNPAAFKPSFDPSTFDPANFEPSYEPSS--FQPTALKKA 139
+Y P Y P++ + S +P + P++ P+T + P+Y P+S + PT+ K +
Sbjct: 349 -EYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYS 407
Query: 140 P 140
P
Sbjct: 408 P 408
>UNIPROTKB|I3LQ53 [details] [associations]
symbol:I3LQ53 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000684 Pfam:PF05001 PROSITE:PS00115 GO:GO:0003677
GO:GO:0006366 GO:GO:0005665 GeneTree:ENSGT00700000104490
EMBL:FP565284 Ensembl:ENSSSCT00000030016 OMA:YAESDYL Uniprot:I3LQ53
Length = 543
Score = 122 (48.0 bits), Expect = 9.8e-06, P = 9.8e-06
Identities = 43/135 (31%), Positives = 64/135 (47%)
Query: 25 PQRQPLYQ--NPRYSEST---HPVRQNY--ISPSLRTTRRAAKPNQPTSYSHQTAEYY-- 75
PQ P Y +P YS ++ P NY SPS T + P P SYS + Y
Sbjct: 183 PQ-SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPT 240
Query: 76 RPNYQPSGQNQY-YDPSYQPSNYQESYNPNPAAFKP---SFDPSTFDPANFEPSYEPSS- 130
P+Y P+ + PSY P++ SY+P ++ P S+ P++ + PSY P+S
Sbjct: 241 SPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 298
Query: 131 -FQPTALKKAPL-PS 143
+ PT+ +P PS
Sbjct: 299 SYSPTSPSYSPTSPS 313
Score = 120 (47.3 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 43/137 (31%), Positives = 62/137 (45%)
Query: 29 PLYQ--NPRYSEST---HPVRQNY--ISPSLRTTRRAAKPNQPTSYSHQTAEYY--RPNY 79
P Y +P YS ++ P +Y SPS T + P P SYS + Y PNY
Sbjct: 270 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPNYSPTSPNY 328
Query: 80 QPSGQNQY-YDPSYQPS--NYQESYNPNPAAFKPSFDPSTFDPANFEPSYEPSSFQPTAL 136
P+ + PSY P+ NY + +PN + PS+ P++ + PSY PSS + T
Sbjct: 329 TPTSPSYSPTSPSYSPTSPNYTPT-SPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQ 387
Query: 137 KKAPLPSKVTDHDNSES 153
PS + +S S
Sbjct: 388 SPTYTPSSPSYSPSSPS 404
Score = 115 (45.5 bits), Expect = 0.00011, P = 0.00011
Identities = 40/122 (32%), Positives = 57/122 (46%)
Query: 33 NPRY---SESTHPVRQNY--ISPSLRTTRRAAKPNQPTSYSHQTAEYY--RPNYQPSGQN 85
+P Y S S P +Y SP+ T P P SYS + Y P+Y PS
Sbjct: 325 SPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSP-SYSPTSPSYSPTSPSYSPSSPR 383
Query: 86 QY-YDPSYQPSNYQESYNPNPAAFKPSFDPSTFDPANFEPSYEPSS--FQPTALKKAPLP 142
P+Y PS+ SY+P+ ++ P+ P + P + PSY PSS + PT+ K +P
Sbjct: 384 YTPQSPTYTPSS--PSYSPSSPSYSPT-SPK-YTPTS--PSYSPSSPEYTPTSPKYSPTS 437
Query: 143 SK 144
K
Sbjct: 438 PK 439
Score = 111 (44.1 bits), Expect = 0.00037, P = 0.00037
Identities = 33/101 (32%), Positives = 52/101 (51%)
Query: 48 ISPSLRTTRRAAKPNQPTSYSHQTAEYY--RPNYQPSGQNQYYDPSYQPSNYQESYNPNP 105
+SPS T A +P P Y+ Q+ Y P+Y P+ PSY P++ +Y+P
Sbjct: 162 MSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTS------PSYSPTS--PNYSPTS 213
Query: 106 AAFKPSFDPSTFDPANFEPSYEPSS--FQPTALKKAPL-PS 143
++ P+ PS + P + PSY P+S + PT+ +P PS
Sbjct: 214 PSYSPT-SPS-YSPTS--PSYSPTSPSYSPTSPSYSPTSPS 250
>FB|FBgn0003277 [details] [associations]
symbol:RpII215 "RNA polymerase II 215kD subunit" species:7227
"Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS;NAS;IDA] [GO:0005703 "polytene
chromosome puff" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS;NAS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=IGI] [GO:0005700
"polytene chromosome" evidence=IDA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
PROSITE:PS00115 SMART:SM00663 GO:GO:0007095 GO:GO:0046872
GO:GO:0003677 EMBL:AE014298 GO:GO:0006366 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0005703 GO:GO:0003899 eggNOG:COG0086
GO:GO:0005665 GeneTree:ENSGT00700000104490 OMA:KVLPWST KO:K03006
EMBL:M27431 EMBL:M14203 EMBL:M11798 EMBL:M19537 PIR:S04457
RefSeq:NP_511124.1 UniGene:Dm.2925 ProteinModelPortal:P04052
SMR:P04052 DIP:DIP-22282N IntAct:P04052 MINT:MINT-970158
STRING:P04052 PaxDb:P04052 EnsemblMetazoa:FBtr0073542 GeneID:32100
KEGG:dme:Dmel_CG1554 CTD:32100 FlyBase:FBgn0003277
InParanoid:P04052 OrthoDB:EOG4QRFJV PhylomeDB:P04052
GenomeRNAi:32100 NextBio:776837 Bgee:P04052 GermOnline:CG1554
Uniprot:P04052
Length = 1887
Score = 125 (49.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 41/125 (32%), Positives = 61/125 (48%)
Query: 29 PLYQNPRYSEST---HPVRQNYISPSLRTTRRAAKPNQPTSYSHQTAEYYRPNYQPSGQN 85
PLY +PRY+ +T +P Y SPS P P YS P++ SG N
Sbjct: 1610 PLYASPRYASTTPNFNPQSTGY-SPS----SSGYSPTSPV-YSPTVQFQSSPSFAGSGSN 1663
Query: 86 QYYDP--SYQPSNYQESYNPNPAAFKPSFDPSTFDPANFEPSYEPSS--FQPTALKKAPL 141
Y P +Y PS+ +Y+PN ++ P+ PS + P++ PSY P+S + PT+ +P
Sbjct: 1664 -IYSPGNAYSPSS--SNYSPNSPSYSPT-SPS-YSPSS--PSYSPTSPCYSPTSPSYSPT 1716
Query: 142 PSKVT 146
T
Sbjct: 1717 SPNYT 1721
>ZFIN|ZDB-GENE-041008-78 [details] [associations]
symbol:polr2a "polymerase (RNA) II (DNA directed)
polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 ZFIN:ZDB-GENE-041008-78 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GO:GO:0005665 GeneTree:ENSGT00700000104490 EMBL:AL929346
IPI:IPI00608319 Ensembl:ENSDART00000077495 Bgee:F1Q9K4
Uniprot:F1Q9K4
Length = 1965
Score = 123 (48.4 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 42/130 (32%), Positives = 60/130 (46%)
Query: 33 NPRYSEST---HPVRQNYI--SPSLRTTRRAAKPNQPTSYSHQTAEYY--RPNYQPSGQN 85
+P YS ++ P NY SPS T + P P SYS + Y PNY P+ +
Sbjct: 1735 SPSYSPTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSP-SYSPTSPNYTPTSPNYSPTSPS 1793
Query: 86 QY-YDPSYQPSN--Y---QESYNPNPAAFKPS---FDPSTFDPANFEPSYEPSS--FQPT 134
PSY PS+ Y +Y P+ ++ PS + P++ PSY PSS + PT
Sbjct: 1794 YSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPT 1853
Query: 135 ALKKAPLPSK 144
+ K +P K
Sbjct: 1854 SPKYSPTSPK 1863
Score = 120 (47.3 bits), Expect = 0.00010, P = 0.00010
Identities = 43/135 (31%), Positives = 64/135 (47%)
Query: 25 PQRQPLYQ--NPRYSEST---HPVRQNY--ISPSLRTTRRAAKPNQPTSYSHQTAEYY-- 75
PQ P Y +P YS ++ P NY SPS T + P P SYS + Y
Sbjct: 1607 PQ-SPGYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPT 1664
Query: 76 RPNYQPSGQNQY-YDPSYQPSNYQESYNPNPAAFKP---SFDPSTFDPANFEPSYEPSS- 130
P+Y P+ + PSY P++ SY+P ++ P S+ P++ + PSY P+S
Sbjct: 1665 SPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1722
Query: 131 -FQPTALKKAPL-PS 143
+ PT+ +P PS
Sbjct: 1723 SYSPTSPSYSPTSPS 1737
Score = 113 (44.8 bits), Expect = 0.00094, P = 0.00093
Identities = 41/136 (30%), Positives = 60/136 (44%)
Query: 29 PLYQ--NPRYSEST---HPVRQNY--ISPSLRTTRRAAKPNQPTSYSHQTAEYY--RPNY 79
P Y +P YS ++ P +Y SPS T + P P SYS + Y PNY
Sbjct: 1694 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPNY 1752
Query: 80 QPSGQNQY-YDPSYQPSNYQES-YNPNPAAFKPSFDPSTFDPANFEPSYEPSSFQPTALK 137
P+ + PSY P++ S +PN P++ P++ + PSY PSS + T
Sbjct: 1753 TPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPSSPRYTPQS 1812
Query: 138 KAPLPSKVTDHDNSES 153
PS + +S S
Sbjct: 1813 PTYTPSSPSYSPSSPS 1828
>UNIPROTKB|P24928 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase II subunit RPB1"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003677 "DNA binding" evidence=NAS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0006366
"transcription from RNA polymerase II promoter"
evidence=IDA;NAS;TAS] [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IDA] [GO:0004672 "protein kinase activity" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0031625 "ubiquitin protein ligase binding" evidence=IPI]
[GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 Reactome:REACT_116125
EMBL:CH471108 GO:GO:0016032 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468 GO:GO:0006368
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006367 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283
Reactome:REACT_1892 EMBL:AC113189 GO:GO:0003899 PDB:2GHQ PDB:2GHT
PDBsum:2GHQ PDBsum:2GHT eggNOG:COG0086 GO:GO:0003968 GO:GO:0005665
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X63564 EMBL:X74874
EMBL:X74873 EMBL:X74872 EMBL:X74871 EMBL:X74870 EMBL:BC137231
IPI:IPI00031627 PIR:I38186 PIR:S21054 RefSeq:NP_000928.1
UniGene:Hs.270017 PDB:2LTO PDBsum:2LTO ProteinModelPortal:P24928
SMR:P24928 DIP:DIP-29011N IntAct:P24928 MINT:MINT-156582
STRING:P24928 PhosphoSite:P24928 DMDM:281185484 PaxDb:P24928
PRIDE:P24928 Ensembl:ENST00000322644 GeneID:5430 KEGG:hsa:5430
UCSC:uc002ghf.4 CTD:5430 GeneCards:GC17P007387 H-InvDB:HIX0173727
HGNC:HGNC:9187 HPA:CAB012226 HPA:CAB016388 HPA:CAB022311
HPA:HPA021563 MIM:180660 neXtProt:NX_P24928 PharmGKB:PA33507
HOVERGEN:HBG004339 InParanoid:P24928 OrthoDB:EOG4JWVCM
BindingDB:P24928 ChEMBL:CHEMBL1641353 ChiTaRS:POLR2A
EvolutionaryTrace:P24928 GenomeRNAi:5430 NextBio:21009
ArrayExpress:P24928 Bgee:P24928 CleanEx:HS_POLR2A
Genevestigator:P24928 GermOnline:ENSG00000181222 Uniprot:P24928
Length = 1970
Score = 122 (48.0 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 43/135 (31%), Positives = 64/135 (47%)
Query: 25 PQRQPLYQ--NPRYSEST---HPVRQNY--ISPSLRTTRRAAKPNQPTSYSHQTAEYY-- 75
PQ P Y +P YS ++ P NY SPS T + P P SYS + Y
Sbjct: 1610 PQ-SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPT 1667
Query: 76 RPNYQPSGQNQY-YDPSYQPSNYQESYNPNPAAFKP---SFDPSTFDPANFEPSYEPSS- 130
P+Y P+ + PSY P++ SY+P ++ P S+ P++ + PSY P+S
Sbjct: 1668 SPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1725
Query: 131 -FQPTALKKAPL-PS 143
+ PT+ +P PS
Sbjct: 1726 SYSPTSPSYSPTSPS 1740
Score = 120 (47.3 bits), Expect = 0.00010, P = 0.00010
Identities = 43/137 (31%), Positives = 62/137 (45%)
Query: 29 PLYQ--NPRYSEST---HPVRQNY--ISPSLRTTRRAAKPNQPTSYSHQTAEYY--RPNY 79
P Y +P YS ++ P +Y SPS T + P P SYS + Y PNY
Sbjct: 1697 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPNYSPTSPNY 1755
Query: 80 QPSGQNQY-YDPSYQPS--NYQESYNPNPAAFKPSFDPSTFDPANFEPSYEPSSFQPTAL 136
P+ + PSY P+ NY + +PN + PS+ P++ + PSY PSS + T
Sbjct: 1756 TPTSPSYSPTSPSYSPTSPNYTPT-SPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQ 1814
Query: 137 KKAPLPSKVTDHDNSES 153
PS + +S S
Sbjct: 1815 SPTYTPSSPSYSPSSPS 1831
Score = 115 (45.5 bits), Expect = 0.00052, P = 0.00052
Identities = 40/122 (32%), Positives = 57/122 (46%)
Query: 33 NPRY---SESTHPVRQNY--ISPSLRTTRRAAKPNQPTSYSHQTAEYY--RPNYQPSGQN 85
+P Y S S P +Y SP+ T P P SYS + Y P+Y PS
Sbjct: 1752 SPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSP-SYSPTSPSYSPTSPSYSPSSPR 1810
Query: 86 QY-YDPSYQPSNYQESYNPNPAAFKPSFDPSTFDPANFEPSYEPSS--FQPTALKKAPLP 142
P+Y PS+ SY+P+ ++ P+ P + P + PSY PSS + PT+ K +P
Sbjct: 1811 YTPQSPTYTPSS--PSYSPSSPSYSPA-SPK-YTPTS--PSYSPSSPEYTPTSPKYSPTS 1864
Query: 143 SK 144
K
Sbjct: 1865 PK 1866
>RGD|1587326 [details] [associations]
symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide A"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IEA;ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA;ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0006468 "protein
phosphorylation" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 RGD:1587326 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 KO:K03006 CTD:5430 OrthoDB:EOG4JWVCM
IPI:IPI00952328 RefSeq:XP_001079162.1 RefSeq:XP_343923.3
UniGene:Rn.163136 Ensembl:ENSRNOT00000068013 GeneID:363633
KEGG:rno:363633 UCSC:RGD:1587326 NextBio:683839 ArrayExpress:D4A5A6
Uniprot:D4A5A6
Length = 1970
Score = 122 (48.0 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 43/135 (31%), Positives = 64/135 (47%)
Query: 25 PQRQPLYQ--NPRYSEST---HPVRQNY--ISPSLRTTRRAAKPNQPTSYSHQTAEYY-- 75
PQ P Y +P YS ++ P NY SPS T + P P SYS + Y
Sbjct: 1610 PQ-SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPT 1667
Query: 76 RPNYQPSGQNQY-YDPSYQPSNYQESYNPNPAAFKP---SFDPSTFDPANFEPSYEPSS- 130
P+Y P+ + PSY P++ SY+P ++ P S+ P++ + PSY P+S
Sbjct: 1668 SPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1725
Query: 131 -FQPTALKKAPL-PS 143
+ PT+ +P PS
Sbjct: 1726 SYSPTSPSYSPTSPS 1740
Score = 120 (47.3 bits), Expect = 0.00010, P = 0.00010
Identities = 43/137 (31%), Positives = 62/137 (45%)
Query: 29 PLYQ--NPRYSEST---HPVRQNY--ISPSLRTTRRAAKPNQPTSYSHQTAEYY--RPNY 79
P Y +P YS ++ P +Y SPS T + P P SYS + Y PNY
Sbjct: 1697 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPNYSPTSPNY 1755
Query: 80 QPSGQNQY-YDPSYQPS--NYQESYNPNPAAFKPSFDPSTFDPANFEPSYEPSSFQPTAL 136
P+ + PSY P+ NY + +PN + PS+ P++ + PSY PSS + T
Sbjct: 1756 TPTSPSYSPTSPSYSPTSPNYTPT-SPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQ 1814
Query: 137 KKAPLPSKVTDHDNSES 153
PS + +S S
Sbjct: 1815 SPTYTPSSPSYSPSSPS 1831
Score = 115 (45.5 bits), Expect = 0.00052, P = 0.00052
Identities = 40/122 (32%), Positives = 57/122 (46%)
Query: 33 NPRY---SESTHPVRQNY--ISPSLRTTRRAAKPNQPTSYSHQTAEYY--RPNYQPSGQN 85
+P Y S S P +Y SP+ T P P SYS + Y P+Y PS
Sbjct: 1752 SPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSP-SYSPTSPSYSPTSPSYSPSSPR 1810
Query: 86 QY-YDPSYQPSNYQESYNPNPAAFKPSFDPSTFDPANFEPSYEPSS--FQPTALKKAPLP 142
P+Y PS+ SY+P+ ++ P+ P + P + PSY PSS + PT+ K +P
Sbjct: 1811 YTPQSPTYTPSS--PSYSPSSPSYSPT-SPK-YTPTS--PSYSPSSPEYTPTSPKYSPTS 1864
Query: 143 SK 144
K
Sbjct: 1865 PK 1866
>MGI|MGI:98086 [details] [associations]
symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide
A" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 MGI:MGI:98086
GO:GO:0046872 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
EMBL:AL603707 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 GeneTree:ENSGT00700000104490
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 CTD:5430
HOVERGEN:HBG004339 OrthoDB:EOG4JWVCM ChiTaRS:POLR2A EMBL:M12130
EMBL:M14101 IPI:IPI00136207 PIR:A28490 RefSeq:NP_033115.1
UniGene:Mm.16533 DisProt:DP00181 ProteinModelPortal:P08775
SMR:P08775 DIP:DIP-46369N IntAct:P08775 STRING:P08775
PhosphoSite:P08775 PaxDb:P08775 PRIDE:P08775
Ensembl:ENSMUST00000058470 Ensembl:ENSMUST00000071213 GeneID:20020
KEGG:mmu:20020 UCSC:uc007jrj.1 InParanoid:Q5F298 NextBio:297535
Bgee:P08775 CleanEx:MM_POLR2A Genevestigator:P08775
GermOnline:ENSMUSG00000005198 Uniprot:P08775
Length = 1970
Score = 122 (48.0 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 43/135 (31%), Positives = 64/135 (47%)
Query: 25 PQRQPLYQ--NPRYSEST---HPVRQNY--ISPSLRTTRRAAKPNQPTSYSHQTAEYY-- 75
PQ P Y +P YS ++ P NY SPS T + P P SYS + Y
Sbjct: 1610 PQ-SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPT 1667
Query: 76 RPNYQPSGQNQY-YDPSYQPSNYQESYNPNPAAFKP---SFDPSTFDPANFEPSYEPSS- 130
P+Y P+ + PSY P++ SY+P ++ P S+ P++ + PSY P+S
Sbjct: 1668 SPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1725
Query: 131 -FQPTALKKAPL-PS 143
+ PT+ +P PS
Sbjct: 1726 SYSPTSPSYSPTSPS 1740
Score = 120 (47.3 bits), Expect = 0.00010, P = 0.00010
Identities = 43/137 (31%), Positives = 62/137 (45%)
Query: 29 PLYQ--NPRYSEST---HPVRQNY--ISPSLRTTRRAAKPNQPTSYSHQTAEYY--RPNY 79
P Y +P YS ++ P +Y SPS T + P P SYS + Y PNY
Sbjct: 1697 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPNYSPTSPNY 1755
Query: 80 QPSGQNQY-YDPSYQPS--NYQESYNPNPAAFKPSFDPSTFDPANFEPSYEPSSFQPTAL 136
P+ + PSY P+ NY + +PN + PS+ P++ + PSY PSS + T
Sbjct: 1756 TPTSPSYSPTSPSYSPTSPNYTPT-SPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQ 1814
Query: 137 KKAPLPSKVTDHDNSES 153
PS + +S S
Sbjct: 1815 SPTYTPSSPSYSPSSPS 1831
>DICTYBASE|DDB_G0279193 [details] [associations]
symbol:rpb1 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 dictyBase:DDB_G0279193
GO:GO:0006355 GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AAFI02000030 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
OMA:KVLPWST EMBL:S52651 PIR:A56823 RefSeq:XP_641735.1 STRING:P35084
PRIDE:P35084 EnsemblProtists:DDB0215406 GeneID:8621932
KEGG:ddi:DDB_G0279193 KO:K03006 ProtClustDB:CLSZ2428993
Uniprot:P35084
Length = 1727
Score = 120 (47.3 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 44/133 (33%), Positives = 66/133 (49%)
Query: 25 PQRQPLYQ--NPRYSEST---HPVRQNY--ISPSLRTTRRAAKPNQPTSYSHQTAEYYRP 77
PQ P Y +P YS ++ P +Y SPS T + P P SYS T+ +Y P
Sbjct: 1548 PQ-SPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYS-PTSPFYSP 1604
Query: 78 ---NYQPSGQNQY-YDPSYQPSNYQESYNPNPAAFKPSFDPSTFDPANFEPSYEPSS--F 131
+Y P+ + PSY P++ SY+P ++ P+ PS + P + PSY P+S +
Sbjct: 1605 TSPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPT-SPS-YSPTS--PSYSPTSPSY 1658
Query: 132 QPTALKKAPL-PS 143
PT+ +P PS
Sbjct: 1659 SPTSPSYSPTSPS 1671
Score = 117 (46.2 bits), Expect = 0.00024, P = 0.00024
Identities = 41/120 (34%), Positives = 59/120 (49%)
Query: 29 PLYQ--NPRYSEST---HPVRQNY--ISPSLRTTRRAAKPNQPTSYSHQTAEYY--RPNY 79
P Y +P YS ++ P +Y SPS T + P P SYS + Y P+Y
Sbjct: 1607 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSY 1665
Query: 80 QPSGQNQY-YDPSYQPSNYQESYNPNPAAFKPSFDPSTFDPANFEPSYEPSSFQPTALKK 138
P+ + PSY P++ SY+P+ ++ PS PS + P++ PSY PSS PT K
Sbjct: 1666 SPTSPSYSPTSPSYSPTS--PSYSPSSPSYSPS-SPS-YSPSS--PSYSPSS--PTFTNK 1717
>WB|WBGene00009787 [details] [associations]
symbol:F46F2.3 species:6239 "Caenorhabditis elegans"
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
GO:GO:0009792 EMBL:Z69903 PIR:T22308 RefSeq:NP_510532.1
STRING:Q20468 EnsemblMetazoa:F46F2.3 GeneID:181619
KEGG:cel:CELE_F46F2.3 UCSC:F46F2.3 CTD:181619 WormBase:F46F2.3
HOGENOM:HOG000018282 InParanoid:Q20468 OMA:CDPCAAA NextBio:914684
Uniprot:Q20468
Length = 137
Score = 98 (39.6 bits), Expect = 0.00016, P = 0.00016
Identities = 28/78 (35%), Positives = 40/78 (51%)
Query: 72 AEYYRPNYQPSGQNQYYDPSYQPSNYQESYNPNPAAFKPSFDPSTFD-PA---NFEPSYE 127
A YY P QP+ Q QY P+YQP Q +Y P P+A++ + + PA N++ E
Sbjct: 43 APYYPPQ-QPAYQPQYQQPAYQPHYQQPAYQPQPSAYQTAPVQQAYQQPAPVQNYQTVSE 101
Query: 128 P---SSFQPTALKKAPLP 142
P +S A +AP P
Sbjct: 102 PVAQTSGGGGAYAQAPPP 119
>SGD|S000002299 [details] [associations]
symbol:RPO21 "RNA polymerase II largest subunit B220"
species:4932 "Saccharomyces cerevisiae" [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA;IMP] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003968 "RNA-directed
RNA polymerase activity" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 SGD:S000002299 GO:GO:0005739
GO:GO:0046872 GO:GO:0003677 EMBL:BK006938 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:X96876 EMBL:U27182
GO:GO:0003899 PDB:4GWQ PDBsum:4GWQ PDB:2LO6 PDBsum:2LO6
eggNOG:COG0086 GO:GO:0005665 PDB:1I3Q PDB:1I50 PDB:1I6H PDB:1K83
PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U PDB:1R9S PDB:1R9T PDB:1SFO
PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG PDB:1TWH PDB:1WCM PDB:1Y1V
PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63 PDB:2B8K PDB:2E2H PDB:2E2I
PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2NVQ PDB:2NVT
PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z PDB:2R92 PDB:2R93 PDB:2VUM
PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG PDB:3GTJ PDB:3GTK PDB:3GTL
PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ PDB:3H3V PDB:3HOU PDB:3HOV
PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F
PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:3RZD
PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16 PDB:3S17 PDB:3S1M PDB:3S1N
PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H PDB:4A3B PDB:4A3C PDB:4A3D
PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L
PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS PDBsum:1I3Q PDBsum:1I50
PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK PDBsum:1NT9 PDBsum:1PQV
PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T PDBsum:1SFO PDBsum:1TWA
PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG PDBsum:1TWH PDBsum:1WCM
PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63
PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I PDBsum:2E2J PDBsum:2JA5
PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8 PDBsum:2NVQ PDBsum:2NVT
PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ PDBsum:2R7Z PDBsum:2R92
PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9 PDBsum:3CQZ PDBsum:3FKI
PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK PDBsum:3GTL PDBsum:3GTM
PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ PDBsum:3H3V PDBsum:3HOU
PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX PDBsum:3HOY PDBsum:3HOZ
PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F PDBsum:3K7A PDBsum:3M3Y
PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3 PDBsum:3QT1 PDBsum:3RZD
PDBsum:3RZO PDBsum:3S14 PDBsum:3S15 PDBsum:3S16 PDBsum:3S17
PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q PDBsum:3S1R PDBsum:3S2D
PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C PDBsum:4A3D PDBsum:4A3E
PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I PDBsum:4A3J PDBsum:4A3K
PDBsum:4A3L PDBsum:4A3M PDBsum:4A93 PDBsum:4BBR PDBsum:4BBS
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
EMBL:X03128 EMBL:Z74188 PIR:S67686 RefSeq:NP_010141.1 PDB:2L0I
PDBsum:2L0I ProteinModelPortal:P04050 SMR:P04050 DIP:DIP-611N
IntAct:P04050 MINT:MINT-432838 STRING:P04050 PaxDb:P04050
PeptideAtlas:P04050 EnsemblFungi:YDL140C GeneID:851415
KEGG:sce:YDL140C CYGD:YDL140c GeneTree:ENSGT00700000105212
EvolutionaryTrace:P04050 NextBio:968606 ArrayExpress:P04050
Genevestigator:P04050 GermOnline:YDL140C Uniprot:P04050
Length = 1733
Score = 116 (45.9 bits), Expect = 0.00032, P = 0.00032
Identities = 41/141 (29%), Positives = 65/141 (46%)
Query: 29 PLYQ--NPRYSEST---HPVRQNY--ISPSLRTTRRAAKPNQPTSYSHQTAEYY--RPNY 79
P Y +P YS ++ P +Y SPS T + P P SYS + Y P+Y
Sbjct: 1596 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSY 1654
Query: 80 QP-SGQNQYYDPSYQPSNYQESYNPNPAAFKP---SFDPSTFDPANFEPSYEPSS--FQP 133
P S PSY P++ SY+P ++ P S+ P++ + + PSY P+S + P
Sbjct: 1655 SPTSPAYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPGYSP 1712
Query: 134 TALKKAPLPSKVTDHDNSESR 154
+ +P + ++N SR
Sbjct: 1713 GSPAYSPKQDEQKHNENENSR 1733
>WB|WBGene00000123 [details] [associations]
symbol:ama-1 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;IMP] [GO:0009792 "embryo development ending in birth
or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0010458 "exit from mitosis" evidence=IMP]
[GO:0008356 "asymmetric cell division" evidence=IMP] [GO:0032502
"developmental process" evidence=IMP] [GO:0006479 "protein
methylation" evidence=IMP] [GO:0007369 "gastrulation" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0001055 "RNA polymerase II
activity" evidence=IMP] [GO:0042789 "mRNA transcription from RNA
polymerase II promoter" evidence=IMP] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 GO:GO:0005634
GO:GO:0009792 GO:GO:0040010 GO:GO:0007052 GO:GO:0010458
GO:GO:0046872 GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0006479 GO:GO:0008356 GO:GO:0007369
GO:GO:0042789 EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665
EMBL:M29235 PIR:A34092 PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356
STRING:P16356 PaxDb:P16356 EnsemblMetazoa:F36A4.7.1
EnsemblMetazoa:F36A4.7.2 GeneID:177190 KEGG:cel:CELE_F36A4.7
UCSC:F36A4.7 CTD:247749 WormBase:F36A4.7
GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975 InParanoid:P16356
OMA:KVLPWST NextBio:895720 GO:GO:0001055 Uniprot:P16356
Length = 1856
Score = 116 (45.9 bits), Expect = 0.00034, P = 0.00034
Identities = 43/131 (32%), Positives = 61/131 (46%)
Query: 29 PLYQ--NPRYSEST---HPVRQNYISPS-LRTTRRAAKPNQPTSYSHQTAEYY--RPNYQ 80
P Y +P YS ++ P +Y S + P+ PT YS + Y P Y
Sbjct: 1691 PTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPT-YSPTSPSYSPTSPQYS 1749
Query: 81 P-SGQNQYYDPSYQPSNYQESYNP-NPAAFK-PSFDPS--TFDPANFEPSYEPSS--FQP 133
P S Q P+Y PS+ +YNP +P F P + P+ T+ P + PSY PSS + P
Sbjct: 1750 PTSPQYSPSSPTYTPSS--PTYNPTSPRGFSSPQYSPTSPTYSPTS--PSYTPSSPQYSP 1805
Query: 134 TALKKAPLPSK 144
T+ P PS+
Sbjct: 1806 TSPTYTPSPSE 1816
>UNIPROTKB|P16356 [details] [associations]
symbol:ama-1 "DNA-directed RNA polymerase II subunit RPB1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0007052 GO:GO:0010458 GO:GO:0046872
GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0006479 GO:GO:0008356 GO:GO:0007369 GO:GO:0042789
EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665 EMBL:M29235 PIR:A34092
PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356 STRING:P16356
PaxDb:P16356 EnsemblMetazoa:F36A4.7.1 EnsemblMetazoa:F36A4.7.2
GeneID:177190 KEGG:cel:CELE_F36A4.7 UCSC:F36A4.7 CTD:247749
WormBase:F36A4.7 GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975
InParanoid:P16356 OMA:KVLPWST NextBio:895720 GO:GO:0001055
Uniprot:P16356
Length = 1856
Score = 116 (45.9 bits), Expect = 0.00034, P = 0.00034
Identities = 43/131 (32%), Positives = 61/131 (46%)
Query: 29 PLYQ--NPRYSEST---HPVRQNYISPS-LRTTRRAAKPNQPTSYSHQTAEYY--RPNYQ 80
P Y +P YS ++ P +Y S + P+ PT YS + Y P Y
Sbjct: 1691 PTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPT-YSPTSPSYSPTSPQYS 1749
Query: 81 P-SGQNQYYDPSYQPSNYQESYNP-NPAAFK-PSFDPS--TFDPANFEPSYEPSS--FQP 133
P S Q P+Y PS+ +YNP +P F P + P+ T+ P + PSY PSS + P
Sbjct: 1750 PTSPQYSPSSPTYTPSS--PTYNPTSPRGFSSPQYSPTSPTYSPTS--PSYTPSSPQYSP 1805
Query: 134 TALKKAPLPSK 144
T+ P PS+
Sbjct: 1806 TSPTYTPSPSE 1816
>POMBASE|SPBC28F2.12 [details] [associations]
symbol:rpb1 "RNA polymerase II large subunit Rpb1"
species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IC] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IC] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 PomBase:SPBC28F2.12 GO:GO:0005829
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 PDB:3H0G PDBsum:3H0G
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X56564 PIR:S26849
RefSeq:NP_595673.1 ProteinModelPortal:P36594 IntAct:P36594
MINT:MINT-1214221 STRING:P36594 EnsemblFungi:SPBC28F2.12.1
GeneID:2540292 KEGG:spo:SPBC28F2.12 OrthoDB:EOG4J14H5
EvolutionaryTrace:P36594 NextBio:20801422 Uniprot:P36594
Length = 1752
Score = 114 (45.2 bits), Expect = 0.00062, P = 0.00062
Identities = 40/126 (31%), Positives = 60/126 (47%)
Query: 29 PLYQ--NPRYSESTHPVRQNYISPSLRTTRRAAKPNQPTSYSHQTAEYY--RPNYQPSGQ 84
P Y +P YS T P + SPS T + P P SYS + Y P+Y P+
Sbjct: 1569 PAYMPSSPSYSP-TSP-SYSPTSPSYSPTSPSYSPTSP-SYSATSPSYSPTSPSYSPTSP 1625
Query: 85 NQY-YDPSYQPSNYQESYNPNPAAFKP---SFDPSTFDPANFEPSYEPSS--FQPTALKK 138
+ PSY P++ SY+P ++ P S+ P++ + PSY P+S + PT+
Sbjct: 1626 SYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1683
Query: 139 APL-PS 143
+P PS
Sbjct: 1684 SPTSPS 1689
>TAIR|locus:2064607 [details] [associations]
symbol:PLDBETA1 "phospholipase D beta 1" species:3702
"Arabidopsis thaliana" [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004630 "phospholipase D activity"
evidence=ISS;IDA;TAS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008152 "metabolic process" evidence=IEA] [GO:0009816 "defense
response to bacterium, incompatible interaction" evidence=IEP]
[GO:0046686 "response to cadmium ion" evidence=IEP] [GO:0005515
"protein binding" evidence=IPI] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0005546 "phosphatidylinositol-4,5-bisphosphate
binding" evidence=IDA] InterPro:IPR000008 InterPro:IPR001736
InterPro:IPR008973 Pfam:PF00168 Pfam:PF00614 PROSITE:PS50035
SMART:SM00155 SMART:SM00239 GO:GO:0009506 GO:GO:0005737
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0016020
GO:GO:0016042 InterPro:IPR018029 SUPFAM:SSF49562 PROSITE:PS50004
EMBL:U90439 GO:GO:0005546 GO:GO:0009816 eggNOG:COG1502
InterPro:IPR015679 PANTHER:PTHR18896 GO:GO:0070290 GO:GO:0004630
KO:K01115 HOGENOM:HOG000240112 InterPro:IPR024632 Pfam:PF12357
EMBL:U84568 IPI:IPI00538950 IPI:IPI01019586 PIR:H84848
RefSeq:NP_565963.2 UniGene:At.14711 ProteinModelPortal:P93733
IntAct:P93733 STRING:P93733 PaxDb:P93733 PRIDE:P93733 GeneID:818802
KEGG:ath:AT2G42010 TAIR:At2g42010 InParanoid:P93733 OMA:AAGGSQH
BioCyc:MetaCyc:AT2G42010-MONOMER Genevestigator:P93733
GermOnline:AT2G42010 Uniprot:P93733
Length = 1083
Score = 112 (44.5 bits), Expect = 0.00067, P = 0.00067
Identities = 45/155 (29%), Positives = 63/155 (40%)
Query: 25 PQRQPLYQNPRYSESTHPVRQNYISPSLRTTRRAAKPNQP---TSYSHQTAEYYRPNYQP 81
P +P Y P ++ + P Y P T A P P TS SH Y N QP
Sbjct: 28 PSSEP-YPPPPTNQYSAPYYP-YPPPPYATPPPYASPPPPHQHTSGSHSGPLDYSHNPQP 85
Query: 82 SGQNQYYDPSYQPSNYQESYNPNPAAFKPSFDPSTFDPANFEPSY-EPSSFQPTALK-KA 139
S P Y ++ Y P+P ++P + + P SY EP+ + P K +
Sbjct: 86 SSLAAA-PPEYHRHSFD--YQPSPYPYQPQGNFGAYGPPPPHYSYQEPAQYPPPETKPQE 142
Query: 140 PLPS-KVTDHDNSESRLERQSGGGGGHDTYVDFGA 173
PLP + T R + S GG GHD + G+
Sbjct: 143 PLPPPQQTQGFQEYRRQDCLSTGGTGHDNVSNSGS 177
>TAIR|locus:2058203 [details] [associations]
symbol:FPA species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0009911 "positive regulation of flower
development" evidence=IMP] [GO:0010228 "vegetative to reproductive
phase transition of meristem" evidence=IMP] [GO:0000785 "chromatin"
evidence=IDA] [GO:0009553 "embryo sac development" evidence=IGI]
[GO:0009790 "embryo development" evidence=IGI] [GO:0031048
"chromatin silencing by small RNA" evidence=IMP] [GO:0006378 "mRNA
polyadenylation" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0030154 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0000785
GO:GO:0006351 GO:GO:0003723 GO:GO:0009790 GO:GO:0009911
GO:GO:0031048 GO:GO:0010228 GO:GO:0009908 GO:GO:0009553
EMBL:AC002335 InterPro:IPR012921 Pfam:PF07744 HSSP:Q9V535
EMBL:AY849993 EMBL:AY094463 EMBL:BT003029 EMBL:AK317032
EMBL:AK318833 IPI:IPI00545884 IPI:IPI00852356 IPI:IPI00955350
RefSeq:NP_001078046.1 RefSeq:NP_001078047.1 RefSeq:NP_001078048.1
RefSeq:NP_181869.2 UniGene:At.12188 UniGene:At.36898
ProteinModelPortal:Q8LPQ9 SMR:Q8LPQ9 IntAct:Q8LPQ9 STRING:Q8LPQ9
PaxDb:Q8LPQ9 PRIDE:Q8LPQ9 EnsemblPlants:AT2G43410.2
EnsemblPlants:AT2G43410.3 EnsemblPlants:AT2G43410.4 GeneID:818942
KEGG:ath:AT2G43410 TAIR:At2g43410 eggNOG:NOG250829
HOGENOM:HOG000015139 InParanoid:A8MQX1 OMA:TSAYIDF PhylomeDB:Q8LPQ9
ProtClustDB:CLSN2697851 Genevestigator:Q8LPQ9 PROSITE:PS50917
Uniprot:Q8LPQ9
Length = 901
Score = 111 (44.1 bits), Expect = 0.00072, P = 0.00072
Identities = 38/128 (29%), Positives = 53/128 (41%)
Query: 25 PQRQP-LYQNPRYSESTHPVRQNYISPSLRTTRRAAKPNQP-TSYS--------HQTAEY 74
P R P NP Y+ Y S S+ + + PN P +YS H ++
Sbjct: 724 PSRYPPASNNPNYTSGMVHGNMQYQSQSVNMPQLSPLPNMPHNNYSMYTQGSSNHPVSQP 783
Query: 75 YRPNYQPSGQ--NQYYDP--SYQPSNYQ-----ESYNPNPAAFKPSFDPSTFDPANFEPS 125
YQP NQ Y P SYQ +N+ ++ N NP+ F+ + P D AN EP
Sbjct: 784 MVQQYQPEASMPNQNYGPIPSYQQANFHGVTTNQAQNLNPSQFQAAMQPPA-DKANLEPQ 842
Query: 126 YEPSSFQP 133
+ QP
Sbjct: 843 NQALRLQP 850
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.310 0.128 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 193 176 0.00081 109 3 11 23 0.38 33
31 0.49 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 550 (59 KB)
Total size of DFA: 163 KB (2096 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 22.50u 0.08s 22.58t Elapsed: 00:00:11
Total cpu time: 22.51u 0.08s 22.59t Elapsed: 00:00:16
Start: Thu Aug 15 12:59:54 2013 End: Thu Aug 15 13:00:10 2013