RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7771
         (193 letters)



>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 422

 Score = 27.6 bits (61), Expect = 1.1
 Identities = 2/44 (4%), Positives = 15/44 (34%)

Query: 4   LINLCTILLTLTTLMLQAEALPQRQPLYQNPRYSESTHPVRQNY 47
           +  +   ++    ++       +    +   + +   +P++  Y
Sbjct: 209 IAPIIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVY 252


>d1g9ga_ a.102.1.2 (A:) Processive endocellulase CelF (Cel48F)
           {Clostridium cellulolyticum [TaxId: 1521]}
          Length = 629

 Score = 25.9 bits (57), Expect = 4.0
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 8/43 (18%)

Query: 93  QPSNYQESYNPNPAAFKPSFDPSTFDPANFEPSYEPSSFQPTA 135
           QP+     Y+ N         P+T+ P   +PS  PS    + 
Sbjct: 95  QPNTSMSRYDAN--------KPATYAPEFQDPSKYPSPLDTSQ 129


>d1hbxg_ a.4.5.21 (G:) Serum response factor accessory protein 1a,
           SAP-1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 155

 Score = 24.9 bits (54), Expect = 5.1
 Identities = 9/61 (14%), Positives = 14/61 (22%)

Query: 22  EALPQRQPLYQNPRYSESTHPVRQNYISPSLRTTRRAAKPNQPTSYSHQTAEYYRPNYQP 81
           E L               +    +   S          KP QP + +    +Y       
Sbjct: 88  EILNMDPMTVGRIEGDCESLNFSEVSSSSKDVENGGKDKPPQPGAKTSSRNDYIHSGLYS 147

Query: 82  S 82
           S
Sbjct: 148 S 148


>d2hh8a1 d.358.1.1 (A:7-133) Hypothetical protein YdfO {Escherichia
           coli [TaxId: 562]}
          Length = 127

 Score = 24.0 bits (52), Expect = 8.2
 Identities = 5/28 (17%), Positives = 10/28 (35%)

Query: 164 GHDTYVDFGAHTGHHGSFGWYADFPAHK 191
              T+ ++  +    G F W  +    K
Sbjct: 83  REITFQEYRRNLAKAGVFRWVTNIHEQK 110


>d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus
           sp. [TaxId: 1131]}
          Length = 170

 Score = 24.3 bits (52), Expect = 8.7
 Identities = 5/33 (15%), Positives = 8/33 (24%)

Query: 72  AEYYRPNYQPSGQNQYYDPSYQPSNYQESYNPN 104
           AE       PS     +     P   +  +   
Sbjct: 36  AEARGGERLPSLLGLTFPAGDIPEEARRLFRLA 68


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.129    0.396 

Gapped
Lambda     K      H
   0.267   0.0507    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 730,691
Number of extensions: 33028
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 12
Length of query: 193
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 112
Effective length of database: 1,295,466
Effective search space: 145092192
Effective search space used: 145092192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.6 bits)