Query psy7773
Match_columns 1281
No_of_seqs 819 out of 5023
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 18:30:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7773.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7773hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0386|consensus 100.0 2E-149 5E-154 1313.6 48.6 744 309-1158 247-994 (1157)
2 KOG0385|consensus 100.0 4E-115 1E-119 996.8 46.5 508 537-1071 159-671 (971)
3 KOG0384|consensus 100.0 7E-108 1E-112 980.4 42.3 520 530-1070 355-888 (1373)
4 KOG0391|consensus 100.0 4E-101 8E-106 901.9 43.2 527 533-1073 603-1466(1958)
5 KOG0388|consensus 100.0 5.1E-98 1E-102 842.3 40.0 473 533-1028 556-1182(1185)
6 KOG0389|consensus 100.0 2.4E-94 5.2E-99 830.1 44.6 501 534-1044 387-932 (941)
7 PLN03142 Probable chromatin-re 100.0 1.2E-91 2.7E-96 880.1 55.8 511 534-1073 159-672 (1033)
8 KOG0387|consensus 100.0 2.6E-92 5.7E-97 814.8 38.1 481 542-1039 202-697 (923)
9 KOG0392|consensus 100.0 9.7E-85 2.1E-89 775.6 42.5 477 542-1025 972-1479(1549)
10 KOG0390|consensus 100.0 2.1E-71 4.6E-76 664.3 41.0 478 541-1030 234-737 (776)
11 KOG1015|consensus 100.0 1.4E-71 3E-76 643.7 37.3 522 544-1076 667-1355(1567)
12 KOG1002|consensus 100.0 6.2E-68 1.3E-72 579.5 38.4 474 534-1023 174-772 (791)
13 KOG4439|consensus 100.0 4.3E-65 9.3E-70 580.0 34.3 473 533-1023 313-881 (901)
14 COG0553 HepA Superfamily II DN 100.0 4.5E-62 9.9E-67 645.3 37.5 480 540-1023 333-845 (866)
15 KOG1016|consensus 100.0 1.6E-60 3.4E-65 541.8 34.0 507 521-1039 231-888 (1387)
16 KOG0385|consensus 100.0 2.6E-59 5.7E-64 537.8 30.0 298 1-321 326-623 (971)
17 PRK04914 ATP-dependent helicas 100.0 1.6E-56 3.5E-61 562.2 34.1 433 543-1026 150-631 (956)
18 KOG0384|consensus 100.0 9.7E-56 2.1E-60 531.7 24.6 304 1-323 534-837 (1373)
19 KOG1000|consensus 100.0 6.4E-54 1.4E-58 471.3 35.2 417 544-1020 197-623 (689)
20 KOG0386|consensus 100.0 1.4E-54 3.1E-59 512.3 23.4 367 1-400 553-919 (1157)
21 KOG0387|consensus 100.0 1.6E-53 3.4E-58 493.5 26.7 320 1-336 374-697 (923)
22 KOG0383|consensus 100.0 2E-54 4.4E-59 514.5 8.3 393 534-954 282-696 (696)
23 KOG0392|consensus 100.0 7.3E-52 1.6E-56 494.9 27.7 319 1-323 1137-1480(1549)
24 KOG0389|consensus 100.0 9.7E-50 2.1E-54 461.2 28.7 313 1-321 561-912 (941)
25 PLN03142 Probable chromatin-re 100.0 3.1E-49 6.8E-54 497.3 32.1 297 1-322 328-624 (1033)
26 KOG1001|consensus 100.0 1.6E-48 3.4E-53 473.2 23.0 456 548-1022 135-672 (674)
27 KOG0388|consensus 100.0 6.1E-48 1.3E-52 437.0 21.2 301 1-321 732-1178(1185)
28 KOG0391|consensus 100.0 5.3E-47 1.1E-51 446.7 24.9 156 168-324 1259-1414(1958)
29 KOG0390|consensus 100.0 1.2E-43 2.6E-48 425.8 26.7 313 1-324 413-734 (776)
30 KOG1015|consensus 100.0 2.2E-42 4.8E-47 401.7 27.4 334 1-338 858-1318(1567)
31 PF00176 SNF2_N: SNF2 family N 100.0 3.9E-40 8.3E-45 380.0 22.4 281 549-844 1-299 (299)
32 TIGR00603 rad25 DNA repair hel 100.0 7.5E-39 1.6E-43 389.4 34.2 383 543-1048 253-664 (732)
33 KOG1002|consensus 100.0 5.8E-39 1.3E-43 352.4 23.5 322 1-324 353-776 (791)
34 KOG4439|consensus 100.0 3.8E-38 8.3E-43 360.2 26.2 309 1-323 500-884 (901)
35 PRK13766 Hef nuclease; Provisi 100.0 3.7E-34 8E-39 370.4 36.6 438 544-1017 14-496 (773)
36 COG0553 HepA Superfamily II DN 100.0 3E-35 6.6E-40 389.5 24.7 317 1-320 509-845 (866)
37 COG1111 MPH1 ERCC4-like helica 100.0 1.8E-31 4E-36 299.5 34.6 444 544-1023 14-504 (542)
38 KOG1016|consensus 100.0 3.6E-33 7.7E-38 319.2 19.3 314 2-322 472-874 (1387)
39 KOG0298|consensus 100.0 7.5E-32 1.6E-36 327.6 20.4 265 562-842 372-689 (1394)
40 PRK04914 ATP-dependent helicas 100.0 7.4E-31 1.6E-35 330.9 24.9 330 1-375 314-683 (956)
41 KOG1000|consensus 100.0 2.6E-30 5.7E-35 285.5 19.7 269 1-314 347-620 (689)
42 COG1061 SSL2 DNA or RNA helica 100.0 1.2E-28 2.6E-33 294.6 32.4 365 541-1012 32-406 (442)
43 PHA02558 uvsW UvsW helicase; P 100.0 2.1E-28 4.4E-33 298.8 32.8 340 543-1001 112-456 (501)
44 KOG1001|consensus 100.0 4E-30 8.6E-35 312.9 13.0 308 1-318 291-671 (674)
45 PTZ00110 helicase; Provisional 100.0 1.8E-26 3.8E-31 283.6 29.6 321 544-1000 151-484 (545)
46 KOG0354|consensus 99.9 4.7E-25 1E-29 263.0 38.1 458 529-1022 46-550 (746)
47 KOG0331|consensus 99.9 4E-26 8.7E-31 264.8 26.9 316 544-993 112-443 (519)
48 KOG0330|consensus 99.9 1.8E-26 3.8E-31 249.7 21.5 325 543-1009 81-414 (476)
49 PRK11776 ATP-dependent RNA hel 99.9 9.3E-26 2E-30 274.8 28.6 317 544-1000 25-349 (460)
50 TIGR00614 recQ_fam ATP-depende 99.9 2.2E-25 4.8E-30 271.0 30.0 307 544-994 10-329 (470)
51 PRK11192 ATP-dependent RNA hel 99.9 3.1E-25 6.8E-30 268.5 27.8 316 544-994 22-348 (434)
52 PRK10590 ATP-dependent RNA hel 99.9 3.6E-25 7.8E-30 268.4 27.6 312 544-993 22-347 (456)
53 PRK01297 ATP-dependent RNA hel 99.9 1.1E-24 2.5E-29 265.9 30.1 318 544-999 108-441 (475)
54 PRK11634 ATP-dependent RNA hel 99.9 1.4E-24 3.1E-29 268.8 31.2 314 544-994 27-348 (629)
55 PLN00206 DEAD-box ATP-dependen 99.9 8.1E-25 1.8E-29 268.4 28.5 315 544-999 142-474 (518)
56 KOG1123|consensus 99.9 5.8E-25 1.3E-29 243.2 23.3 389 543-1056 300-718 (776)
57 PRK04837 ATP-dependent RNA hel 99.9 9E-25 1.9E-29 263.2 27.2 317 544-999 29-361 (423)
58 PRK04537 ATP-dependent RNA hel 99.9 1.3E-24 2.9E-29 267.9 28.3 316 544-998 30-362 (572)
59 PRK11057 ATP-dependent DNA hel 99.9 3.2E-24 6.9E-29 267.4 30.0 304 544-993 24-338 (607)
60 KOG0338|consensus 99.9 2.9E-24 6.3E-29 238.9 25.3 331 541-1010 199-541 (691)
61 TIGR01389 recQ ATP-dependent D 99.9 6.8E-24 1.5E-28 265.6 30.0 303 544-993 12-326 (591)
62 PTZ00424 helicase 45; Provisio 99.9 5.1E-24 1.1E-28 256.0 25.9 320 544-1001 49-375 (401)
63 COG0513 SrmB Superfamily II DN 99.9 3.2E-23 7E-28 252.3 31.2 333 543-1013 49-392 (513)
64 PLN03137 ATP-dependent DNA hel 99.9 8.3E-24 1.8E-28 263.4 26.3 309 543-995 458-784 (1195)
65 TIGR00580 mfd transcription-re 99.9 1.1E-22 2.3E-27 258.8 29.4 307 544-999 450-769 (926)
66 TIGR00643 recG ATP-dependent D 99.9 4.1E-22 8.8E-27 249.7 33.6 305 545-994 235-562 (630)
67 KOG0383|consensus 99.9 1.2E-24 2.5E-29 260.6 9.2 224 1-251 473-696 (696)
68 PRK10917 ATP-dependent DNA hel 99.9 2.5E-22 5.4E-27 253.0 30.5 303 545-992 261-583 (681)
69 KOG0342|consensus 99.9 1.1E-22 2.3E-27 227.3 23.3 314 544-990 103-429 (543)
70 PRK10689 transcription-repair 99.9 4.1E-22 8.9E-27 258.9 30.9 305 544-992 599-913 (1147)
71 KOG0343|consensus 99.9 5.7E-23 1.2E-27 230.6 18.5 358 545-1046 91-462 (758)
72 TIGR03817 DECH_helic helicase/ 99.9 9.7E-22 2.1E-26 248.5 31.5 333 544-1008 35-394 (742)
73 PRK13767 ATP-dependent helicas 99.9 1.8E-21 3.9E-26 251.1 30.1 327 544-995 31-395 (876)
74 KOG0345|consensus 99.9 1.7E-21 3.7E-26 215.9 25.1 317 544-995 27-361 (567)
75 KOG0340|consensus 99.9 7.4E-22 1.6E-26 211.6 21.4 325 530-990 14-353 (442)
76 KOG0333|consensus 99.9 2E-21 4.3E-26 217.5 23.8 342 545-1000 267-624 (673)
77 PRK11448 hsdR type I restricti 99.9 7.3E-21 1.6E-25 246.3 30.0 356 544-997 412-815 (1123)
78 KOG0350|consensus 99.9 6.7E-22 1.5E-26 220.3 17.3 361 543-999 157-539 (620)
79 KOG0328|consensus 99.9 1.9E-21 4.1E-26 201.8 17.3 318 545-1003 49-376 (400)
80 PRK02362 ski2-like helicase; P 99.9 5.2E-20 1.1E-24 235.7 31.6 321 544-999 22-396 (737)
81 TIGR01587 cas3_core CRISPR-ass 99.9 9.6E-20 2.1E-24 215.4 27.8 312 567-1012 2-353 (358)
82 KOG0348|consensus 99.9 4.2E-20 9.1E-25 207.2 22.1 336 545-993 159-549 (708)
83 PRK00254 ski2-like helicase; P 99.8 4.1E-19 8.8E-24 226.9 30.6 320 544-1001 22-389 (720)
84 KOG0347|consensus 99.8 1.1E-19 2.4E-24 204.5 21.7 364 545-1024 203-615 (731)
85 KOG0335|consensus 99.8 6.6E-20 1.4E-24 209.5 20.0 318 543-995 94-441 (482)
86 PRK01172 ski2-like helicase; P 99.8 4.9E-19 1.1E-23 225.3 29.6 312 544-997 21-375 (674)
87 KOG0336|consensus 99.8 1.3E-19 2.8E-24 196.7 17.5 310 545-990 242-564 (629)
88 COG0514 RecQ Superfamily II DN 99.8 6E-19 1.3E-23 209.3 24.3 307 543-995 15-334 (590)
89 TIGR02621 cas3_GSU0051 CRISPR- 99.8 6.2E-19 1.3E-23 217.9 25.3 105 886-996 270-390 (844)
90 KOG4284|consensus 99.8 1.2E-19 2.7E-24 206.7 16.4 315 545-989 47-370 (980)
91 TIGR03714 secA2 accessory Sec 99.8 5.2E-18 1.1E-22 207.7 31.6 404 546-992 69-531 (762)
92 KOG0339|consensus 99.8 3.2E-19 7E-24 198.6 18.8 322 545-1003 245-578 (731)
93 COG1201 Lhr Lhr-like helicases 99.8 4.4E-18 9.5E-23 209.1 28.0 335 543-1015 20-375 (814)
94 TIGR00348 hsdR type I site-spe 99.8 8.8E-18 1.9E-22 210.9 31.4 369 543-998 236-649 (667)
95 KOG0326|consensus 99.8 6.7E-20 1.5E-24 193.3 8.8 313 545-998 107-427 (459)
96 KOG0341|consensus 99.8 1.1E-19 2.4E-24 195.8 10.0 323 545-1008 192-536 (610)
97 KOG0332|consensus 99.8 4.1E-18 8.8E-23 184.1 21.6 313 545-998 112-441 (477)
98 PRK09401 reverse gyrase; Revie 99.8 1.2E-17 2.6E-22 218.1 30.0 297 542-986 77-432 (1176)
99 PRK09200 preprotein translocas 99.8 5.4E-17 1.2E-21 200.9 33.0 402 543-992 76-535 (790)
100 COG1200 RecG RecG-like helicas 99.8 2.2E-17 4.8E-22 194.9 27.2 301 545-990 262-583 (677)
101 PHA02653 RNA helicase NPH-II; 99.8 2.6E-17 5.7E-22 203.0 28.2 328 540-1002 155-516 (675)
102 PRK09751 putative ATP-dependen 99.8 1.3E-17 2.9E-22 217.7 26.8 96 887-985 243-371 (1490)
103 PRK12898 secA preprotein trans 99.8 1.6E-16 3.6E-21 192.6 33.5 413 542-1009 100-592 (656)
104 TIGR00963 secA preprotein tran 99.8 3.2E-17 7E-22 199.4 25.8 119 871-994 388-513 (745)
105 TIGR03158 cas3_cyano CRISPR-as 99.8 2.2E-16 4.8E-21 184.8 28.1 85 887-983 271-357 (357)
106 COG4096 HsdR Type I site-speci 99.7 3.8E-17 8.3E-22 194.7 20.4 354 542-998 162-546 (875)
107 KOG0346|consensus 99.7 9.4E-17 2E-21 176.9 17.7 314 545-994 41-406 (569)
108 KOG0344|consensus 99.7 9.4E-17 2E-21 184.5 18.0 311 544-990 157-487 (593)
109 PRK05580 primosome assembly pr 99.7 1.7E-15 3.6E-20 190.5 30.9 364 545-1000 144-551 (679)
110 KOG0334|consensus 99.7 7.9E-17 1.7E-21 196.6 18.1 318 543-999 385-719 (997)
111 TIGR01054 rgy reverse gyrase. 99.7 2.9E-16 6.4E-21 205.5 24.4 131 542-680 75-213 (1171)
112 COG1205 Distinct helicase fami 99.7 1.5E-15 3.3E-20 192.7 26.2 333 545-1009 70-431 (851)
113 TIGR01970 DEAH_box_HrpB ATP-de 99.7 1.4E-15 3E-20 192.3 25.4 107 888-1000 209-336 (819)
114 TIGR00595 priA primosomal prot 99.7 2.7E-15 5.9E-20 182.0 26.5 295 569-999 2-382 (505)
115 KOG0327|consensus 99.7 2.7E-16 5.8E-21 172.4 13.9 315 545-1000 48-370 (397)
116 COG1204 Superfamily II helicas 99.7 1.3E-15 2.9E-20 190.5 20.9 309 545-988 31-396 (766)
117 PRK14701 reverse gyrase; Provi 99.7 1.5E-15 3.2E-20 202.5 22.3 301 543-990 77-448 (1638)
118 PRK11664 ATP-dependent RNA hel 99.7 4.4E-15 9.5E-20 188.4 24.2 108 888-1001 212-340 (812)
119 COG4098 comFA Superfamily II D 99.7 7.1E-14 1.5E-18 150.3 29.0 319 540-1003 92-419 (441)
120 cd00079 HELICc Helicase superf 99.7 4.8E-16 1E-20 155.4 11.7 120 872-994 12-131 (131)
121 PRK13104 secA preprotein trans 99.7 8E-14 1.7E-18 172.2 32.9 406 542-994 79-583 (896)
122 COG1202 Superfamily II helicas 99.6 4.5E-15 9.8E-20 168.4 19.0 314 543-1000 214-553 (830)
123 PF04851 ResIII: Type III rest 99.6 9.3E-16 2E-20 163.1 12.4 153 545-706 3-183 (184)
124 KOG0337|consensus 99.6 2.8E-15 6.1E-20 164.7 15.4 315 545-1000 43-368 (529)
125 COG4889 Predicted helicase [Ge 99.6 3E-15 6.5E-20 175.8 16.4 159 543-706 159-351 (1518)
126 PRK09694 helicase Cas3; Provis 99.6 7E-14 1.5E-18 176.8 28.4 100 886-988 558-665 (878)
127 PRK13766 Hef nuclease; Provisi 99.6 1.1E-14 2.4E-19 189.3 19.5 140 166-311 344-493 (773)
128 COG1197 Mfd Transcription-repa 99.6 2.4E-13 5.3E-18 169.7 29.7 310 544-999 593-912 (1139)
129 cd00079 HELICc Helicase superf 99.6 6.2E-15 1.3E-19 147.4 12.0 120 169-291 12-131 (131)
130 PRK12906 secA preprotein trans 99.6 3.7E-13 7.9E-18 165.9 29.4 119 870-993 422-548 (796)
131 PRK12904 preprotein translocas 99.6 1.3E-12 2.9E-17 161.6 31.8 405 542-994 78-569 (830)
132 TIGR00631 uvrb excinuclease AB 99.6 4.4E-13 9.6E-18 166.5 26.4 134 870-1009 424-564 (655)
133 KOG0351|consensus 99.5 6.7E-14 1.5E-18 176.2 18.3 313 543-998 262-592 (941)
134 PF00271 Helicase_C: Helicase 99.5 7.4E-15 1.6E-19 132.4 6.4 78 906-986 1-78 (78)
135 PRK13107 preprotein translocas 99.5 1.8E-12 4E-17 159.7 29.2 120 870-994 431-587 (908)
136 PRK11131 ATP-dependent RNA hel 99.5 4.3E-13 9.3E-18 172.8 24.4 108 887-1002 285-413 (1294)
137 PRK05298 excinuclease ABC subu 99.5 8.7E-12 1.9E-16 156.5 34.7 124 870-999 428-556 (652)
138 KOG0352|consensus 99.5 3.8E-13 8.2E-18 147.8 19.4 322 547-995 22-359 (641)
139 KOG0353|consensus 99.5 2.7E-13 5.8E-18 146.2 17.0 313 545-996 94-465 (695)
140 TIGR00603 rad25 DNA repair hel 99.5 2.7E-13 5.9E-18 166.7 19.1 187 56-304 420-614 (732)
141 TIGR01967 DEAH_box_HrpA ATP-de 99.5 7.8E-13 1.7E-17 171.2 22.8 107 888-1002 279-406 (1283)
142 smart00487 DEXDc DEAD-like hel 99.5 2E-13 4.4E-18 146.6 14.2 160 543-708 6-173 (201)
143 KOG0952|consensus 99.5 2E-12 4.4E-17 156.7 23.7 326 560-1014 122-518 (1230)
144 PF00271 Helicase_C: Helicase 99.5 7.4E-14 1.6E-18 125.9 7.2 78 203-283 1-78 (78)
145 cd00046 DEXDc DEAD-like helica 99.4 7.4E-13 1.6E-17 133.6 13.1 137 566-705 2-144 (144)
146 COG1203 CRISPR-associated heli 99.4 8.1E-12 1.7E-16 159.0 24.6 350 543-1019 193-571 (733)
147 COG1111 MPH1 ERCC4-like helica 99.4 1.9E-12 4.2E-17 147.2 14.3 139 167-311 346-495 (542)
148 PRK12900 secA preprotein trans 99.4 3.1E-11 6.6E-16 149.5 25.3 117 871-992 581-705 (1025)
149 smart00490 HELICc helicase sup 99.4 7.4E-13 1.6E-17 120.3 7.9 81 903-986 2-82 (82)
150 KOG0328|consensus 99.4 2.6E-12 5.7E-17 134.4 10.7 124 170-300 253-376 (400)
151 cd00268 DEADc DEAD-box helicas 99.4 1.1E-11 2.3E-16 134.3 15.8 156 545-706 21-185 (203)
152 PF00270 DEAD: DEAD/DEAH box h 99.4 9.1E-12 2E-16 130.5 14.7 158 547-711 1-167 (169)
153 PRK12899 secA preprotein trans 99.3 1.1E-09 2.4E-14 135.7 34.1 119 871-994 551-677 (970)
154 PF00176 SNF2_N: SNF2 family N 99.3 1.7E-12 3.7E-17 149.7 9.1 129 1-141 171-299 (299)
155 PTZ00110 helicase; Provisional 99.3 7.6E-12 1.6E-16 154.5 14.8 126 167-297 359-484 (545)
156 KOG0331|consensus 99.3 5.7E-12 1.2E-16 147.6 12.6 120 165-287 320-440 (519)
157 KOG0298|consensus 99.3 2E-12 4.3E-17 159.8 7.0 141 168-315 1202-1344(1394)
158 KOG0951|consensus 99.3 7.2E-11 1.6E-15 145.1 19.3 173 545-725 309-502 (1674)
159 smart00490 HELICc helicase sup 99.3 6.4E-12 1.4E-16 114.1 7.7 81 200-283 2-82 (82)
160 KOG0333|consensus 99.3 1.4E-11 3E-16 139.4 11.8 119 165-288 499-617 (673)
161 KOG0330|consensus 99.3 2.4E-11 5.2E-16 133.2 13.1 125 170-301 287-411 (476)
162 PRK12326 preprotein translocas 99.3 4.6E-09 9.9E-14 127.2 32.5 406 542-994 75-543 (764)
163 PRK04837 ATP-dependent RNA hel 99.3 2.1E-11 4.6E-16 147.3 12.5 123 168-297 240-362 (423)
164 KOG0329|consensus 99.2 4.2E-11 9.1E-16 123.6 11.7 153 545-704 64-226 (387)
165 PRK11192 ATP-dependent RNA hel 99.2 7E-11 1.5E-15 143.5 13.7 118 168-290 230-347 (434)
166 COG0556 UvrB Helicase subunit 99.2 1.1E-08 2.4E-13 117.0 30.1 138 871-1012 429-571 (663)
167 PRK04537 ATP-dependent RNA hel 99.2 6.4E-11 1.4E-15 146.9 13.2 122 168-296 242-363 (572)
168 PRK01297 ATP-dependent RNA hel 99.2 1.1E-10 2.4E-15 143.1 14.2 124 167-297 319-442 (475)
169 PRK11776 ATP-dependent RNA hel 99.2 1.1E-10 2.4E-15 142.6 13.7 123 168-297 227-349 (460)
170 COG0513 SrmB Superfamily II DN 99.2 1.1E-10 2.4E-15 142.9 13.3 134 169-310 259-392 (513)
171 PLN00206 DEAD-box ATP-dependen 99.2 1.3E-10 2.8E-15 143.3 13.0 125 168-297 350-475 (518)
172 TIGR01407 dinG_rel DnaQ family 99.2 5E-09 1.1E-13 136.5 27.6 89 876-970 661-756 (850)
173 TIGR00614 recQ_fam ATP-depende 99.1 2.2E-10 4.7E-15 140.0 13.8 117 171-291 213-329 (470)
174 PRK10590 ATP-dependent RNA hel 99.1 2.1E-10 4.4E-15 139.7 13.5 121 169-296 231-351 (456)
175 PRK13103 secA preprotein trans 99.1 7.4E-09 1.6E-13 128.5 27.0 120 870-994 431-587 (913)
176 PRK11634 ATP-dependent RNA hel 99.1 1.1E-09 2.4E-14 136.7 19.9 116 168-288 230-345 (629)
177 PHA02558 uvsW UvsW helicase; P 99.1 3.4E-10 7.5E-15 138.9 14.3 128 168-297 327-455 (501)
178 COG1110 Reverse gyrase [DNA re 99.1 1.6E-08 3.5E-13 123.7 27.6 130 542-679 79-216 (1187)
179 PF11496 HDA2-3: Class II hist 99.1 3.9E-10 8.4E-15 126.6 11.8 222 784-1011 4-256 (297)
180 PRK11057 ATP-dependent DNA hel 99.1 6.1E-10 1.3E-14 139.7 14.6 114 170-288 223-336 (607)
181 COG0610 Type I site-specific r 99.1 4.6E-09 1E-13 136.3 22.6 141 563-709 272-417 (962)
182 KOG0332|consensus 99.1 8.3E-10 1.8E-14 120.5 12.7 125 168-299 315-446 (477)
183 TIGR01389 recQ ATP-dependent D 99.1 6.5E-10 1.4E-14 139.9 13.7 117 168-289 209-325 (591)
184 KOG0947|consensus 99.1 8.1E-09 1.7E-13 124.6 21.3 372 541-998 293-721 (1248)
185 PF11496 HDA2-3: Class II hist 99.1 1.6E-09 3.4E-14 121.7 14.2 220 82-310 5-258 (297)
186 PRK12903 secA preprotein trans 99.1 1.1E-07 2.3E-12 117.1 30.7 120 870-994 408-535 (925)
187 PLN03137 ATP-dependent DNA hel 99.0 1E-09 2.3E-14 138.7 13.0 105 185-292 680-784 (1195)
188 PTZ00424 helicase 45; Provisio 99.0 1.1E-09 2.4E-14 131.9 12.8 124 170-300 254-377 (401)
189 KOG0341|consensus 99.0 6.5E-10 1.4E-14 121.2 9.6 131 165-303 404-534 (610)
190 COG4581 Superfamily II RNA hel 99.0 1.3E-08 2.8E-13 128.2 22.2 372 541-998 115-535 (1041)
191 KOG0326|consensus 99.0 5.1E-10 1.1E-14 119.4 6.0 125 164-295 303-427 (459)
192 TIGR00596 rad1 DNA repair prot 98.9 1.6E-08 3.5E-13 127.5 18.7 370 644-1023 7-538 (814)
193 KOG0349|consensus 98.9 6.3E-09 1.4E-13 115.0 12.6 97 887-986 504-603 (725)
194 KOG0340|consensus 98.9 6.7E-09 1.5E-13 113.0 12.6 118 167-287 235-353 (442)
195 PF13872 AAA_34: P-loop contai 98.9 1.3E-08 2.8E-13 111.8 14.9 238 540-802 32-302 (303)
196 COG1061 SSL2 DNA or RNA helica 98.9 2.4E-08 5.3E-13 120.2 18.6 211 54-309 191-406 (442)
197 KOG0336|consensus 98.9 3.3E-09 7.2E-14 116.6 9.4 117 167-287 448-564 (629)
198 KOG0342|consensus 98.9 1E-08 2.2E-13 116.3 12.8 146 168-322 314-459 (543)
199 PRK09200 preprotein translocas 98.9 8.3E-08 1.8E-12 120.1 21.8 117 167-288 410-534 (790)
200 TIGR03817 DECH_helic helicase/ 98.9 8.3E-09 1.8E-13 131.5 13.0 124 177-305 263-394 (742)
201 PRK05298 excinuclease ABC subu 98.9 8.3E-08 1.8E-12 120.9 20.4 123 167-295 428-555 (652)
202 COG1198 PriA Primosomal protei 98.9 1.5E-07 3.3E-12 116.4 22.0 384 545-1002 198-607 (730)
203 TIGR00963 secA preprotein tran 98.9 1.2E-07 2.7E-12 116.7 21.0 118 168-290 388-512 (745)
204 KOG0335|consensus 98.8 1E-08 2.2E-13 118.6 10.9 125 165-292 310-441 (482)
205 KOG0345|consensus 98.8 1.3E-08 2.7E-13 114.7 11.2 120 167-291 239-360 (567)
206 TIGR01587 cas3_core CRISPR-ass 98.8 2.4E-08 5.3E-13 118.2 14.1 122 169-297 207-338 (358)
207 PRK12898 secA preprotein trans 98.8 2.5E-08 5.4E-13 122.1 13.4 116 168-288 456-579 (656)
208 KOG0949|consensus 98.8 8.1E-07 1.8E-11 108.0 25.3 163 544-718 510-682 (1330)
209 PRK13767 ATP-dependent helicas 98.8 3.6E-08 7.7E-13 128.4 14.6 117 173-292 272-395 (876)
210 KOG0327|consensus 98.8 1.4E-08 3.1E-13 112.3 9.2 122 169-299 251-372 (397)
211 TIGR00604 rad3 DNA repair heli 98.8 4.8E-07 1E-11 116.0 24.1 72 545-616 10-82 (705)
212 TIGR03714 secA2 accessory Sec 98.8 3.1E-07 6.7E-12 114.0 20.9 115 168-288 407-530 (762)
213 KOG4284|consensus 98.8 2E-08 4.2E-13 116.5 9.6 121 170-296 259-379 (980)
214 KOG0338|consensus 98.8 1.4E-07 3.1E-12 107.0 16.1 125 171-304 414-538 (691)
215 CHL00122 secA preprotein trans 98.8 3.8E-06 8.2E-11 104.5 29.7 84 871-958 407-491 (870)
216 TIGR00631 uvrb excinuclease AB 98.8 6.5E-08 1.4E-12 120.9 14.6 134 167-306 424-564 (655)
217 KOG0343|consensus 98.7 2.3E-07 5E-12 106.3 17.1 137 167-311 297-435 (758)
218 PF14619 SnAC: Snf2-ATP coupli 98.7 3.7E-09 8E-14 92.5 1.4 58 1088-1148 17-74 (74)
219 KOG0948|consensus 98.7 2.9E-07 6.4E-12 108.8 17.5 141 544-704 128-275 (1041)
220 PRK08074 bifunctional ATP-depe 98.7 3E-06 6.5E-11 111.3 28.7 96 875-973 738-839 (928)
221 KOG1123|consensus 98.7 3.3E-07 7.1E-12 103.7 15.8 128 167-301 525-657 (776)
222 PRK12906 secA preprotein trans 98.7 8.3E-07 1.8E-11 110.5 20.2 117 168-289 423-547 (796)
223 PRK07246 bifunctional ATP-depe 98.7 4.2E-06 9.1E-11 107.9 27.4 89 876-970 635-725 (820)
224 KOG0950|consensus 98.7 4.4E-07 9.5E-12 111.1 17.2 157 545-712 223-394 (1008)
225 TIGR00580 mfd transcription-re 98.7 1.3E-07 2.8E-12 122.0 13.3 110 182-296 657-769 (926)
226 TIGR03117 cas_csf4 CRISPR-asso 98.7 9.1E-06 2E-10 100.2 28.6 78 550-628 2-85 (636)
227 KOG0344|consensus 98.6 1.3E-07 2.9E-12 110.1 11.5 123 167-296 371-494 (593)
228 KOG0348|consensus 98.6 2.2E-07 4.7E-12 106.3 12.5 118 168-288 404-547 (708)
229 COG0514 RecQ Superfamily II DN 98.6 2.5E-07 5.5E-12 111.1 13.4 110 184-298 229-338 (590)
230 PRK12900 secA preprotein trans 98.6 1.7E-06 3.6E-11 108.4 20.5 128 168-305 581-716 (1025)
231 KOG0347|consensus 98.6 1.1E-06 2.4E-11 101.0 17.3 124 186-314 464-589 (731)
232 TIGR02621 cas3_GSU0051 CRISPR- 98.6 1.7E-07 3.8E-12 117.3 12.0 113 170-288 256-383 (844)
233 KOG0339|consensus 98.6 1.4E-07 3E-12 106.9 9.6 128 167-300 451-578 (731)
234 PRK10917 ATP-dependent DNA hel 98.6 3.3E-07 7.2E-12 116.5 14.2 117 170-289 456-583 (681)
235 TIGR00643 recG ATP-dependent D 98.6 3.9E-07 8.5E-12 115.1 13.9 116 172-290 435-561 (630)
236 PRK10689 transcription-repair 98.6 3.3E-07 7.2E-12 120.8 13.6 106 184-294 808-916 (1147)
237 PRK12901 secA preprotein trans 98.6 1.9E-05 4.2E-10 99.0 27.8 120 870-994 610-737 (1112)
238 KOG0354|consensus 98.5 6.3E-07 1.4E-11 109.0 14.2 130 166-304 392-534 (746)
239 KOG1513|consensus 98.5 1.1E-06 2.4E-11 104.2 15.4 113 931-1046 850-982 (1300)
240 PRK12902 secA preprotein trans 98.5 7.5E-05 1.6E-09 93.0 32.0 84 871-958 422-506 (939)
241 KOG0922|consensus 98.5 8.8E-06 1.9E-10 96.8 22.8 110 890-1002 260-392 (674)
242 COG1199 DinG Rad3-related DNA 98.5 7.7E-06 1.7E-10 104.9 24.4 81 886-971 477-560 (654)
243 KOG0346|consensus 98.5 2.2E-06 4.7E-11 96.2 15.0 120 168-291 252-406 (569)
244 KOG0350|consensus 98.5 4.5E-07 9.8E-12 103.1 9.8 129 173-310 419-551 (620)
245 KOG0334|consensus 98.5 6.4E-07 1.4E-11 111.1 11.6 124 167-296 596-719 (997)
246 KOG0926|consensus 98.5 1.9E-05 4.2E-10 94.4 23.1 144 558-712 265-431 (1172)
247 COG1643 HrpA HrpA-like helicas 98.4 6.9E-06 1.5E-10 103.5 19.9 110 888-1003 259-390 (845)
248 PRK15483 type III restriction- 98.4 2E-06 4.4E-11 108.6 15.0 169 565-741 60-278 (986)
249 PRK02362 ski2-like helicase; P 98.4 1.1E-06 2.4E-11 113.4 13.1 111 182-295 240-395 (737)
250 PRK09751 putative ATP-dependen 98.4 1.2E-06 2.5E-11 116.5 13.2 96 184-282 243-371 (1490)
251 PF07652 Flavi_DEAD: Flaviviru 98.4 1.9E-06 4.1E-11 84.4 11.2 132 563-707 3-138 (148)
252 KOG0920|consensus 98.4 3.5E-05 7.7E-10 96.9 24.3 163 872-1044 395-587 (924)
253 TIGR02562 cas3_yersinia CRISPR 98.4 0.00028 6.1E-09 89.5 31.6 47 941-990 838-884 (1110)
254 TIGR01970 DEAH_box_HrpB ATP-de 98.4 1.4E-06 3E-11 111.4 11.8 110 184-299 208-338 (819)
255 PF02399 Herpes_ori_bp: Origin 98.4 4.1E-05 8.8E-10 94.4 23.5 112 873-995 268-385 (824)
256 PRK11747 dinG ATP-dependent DN 98.4 9.5E-05 2.1E-09 94.3 27.8 90 874-970 520-616 (697)
257 KOG0924|consensus 98.3 2.3E-05 4.9E-10 92.3 19.3 94 912-1008 597-705 (1042)
258 PRK12904 preprotein translocas 98.3 2.6E-05 5.6E-10 97.9 21.0 120 168-292 413-570 (830)
259 PHA02653 RNA helicase NPH-II; 98.3 3E-06 6.6E-11 105.8 12.3 108 184-299 394-516 (675)
260 PRK13104 secA preprotein trans 98.3 2.9E-05 6.3E-10 97.6 20.6 129 168-306 427-593 (896)
261 PRK01172 ski2-like helicase; P 98.3 3.7E-06 8E-11 107.8 13.0 110 174-287 225-368 (674)
262 PRK11664 ATP-dependent RNA hel 98.2 3.2E-06 6.9E-11 108.4 10.9 111 184-300 211-342 (812)
263 COG1202 Superfamily II helicas 98.2 2.2E-06 4.8E-11 99.0 8.0 128 167-297 416-553 (830)
264 PRK13107 preprotein translocas 98.2 4.6E-05 1E-09 95.5 19.9 128 168-305 432-596 (908)
265 PRK00254 ski2-like helicase; P 98.2 8.1E-06 1.8E-10 105.2 12.4 121 175-298 228-389 (720)
266 KOG0349|consensus 98.2 4.3E-06 9.3E-11 93.1 7.8 96 185-283 505-603 (725)
267 smart00489 DEXDc3 DEAD-like he 98.1 2.2E-05 4.8E-10 89.3 13.3 73 544-616 7-83 (289)
268 smart00488 DEXDc2 DEAD-like he 98.1 2.2E-05 4.8E-10 89.3 13.3 73 544-616 7-83 (289)
269 KOG0923|consensus 98.1 8.4E-05 1.8E-09 87.6 16.8 103 891-1001 476-607 (902)
270 PF13871 Helicase_C_4: Helicas 98.1 7.1E-06 1.5E-10 90.4 7.5 92 929-1023 52-151 (278)
271 KOG0337|consensus 98.1 6.9E-06 1.5E-10 91.9 7.2 128 165-298 242-369 (529)
272 KOG0953|consensus 98.0 5.1E-05 1.1E-09 87.9 13.4 114 873-990 341-466 (700)
273 PRK11448 hsdR type I restricti 98.0 3.7E-05 8.1E-10 101.5 12.9 106 185-294 698-815 (1123)
274 PRK11131 ATP-dependent RNA hel 97.9 3.1E-05 6.7E-10 101.5 10.8 109 184-300 285-414 (1294)
275 KOG0953|consensus 97.9 5.1E-05 1.1E-09 88.0 10.8 114 170-287 341-466 (700)
276 PRK09694 helicase Cas3; Provis 97.9 5.6E-05 1.2E-09 97.0 12.2 102 181-285 556-665 (878)
277 TIGR01967 DEAH_box_HrpA ATP-de 97.9 5.6E-05 1.2E-09 99.5 12.2 124 170-301 263-408 (1283)
278 TIGR03158 cas3_cyano CRISPR-as 97.9 5.1E-05 1.1E-09 89.3 10.6 100 169-280 251-357 (357)
279 COG1201 Lhr Lhr-like helicases 97.9 8.7E-05 1.9E-09 93.1 12.8 134 171-311 239-374 (814)
280 PF13086 AAA_11: AAA domain; P 97.9 0.00014 3.1E-09 80.2 13.2 154 545-709 1-230 (236)
281 KOG0351|consensus 97.8 5.3E-05 1.2E-09 96.9 9.3 107 183-292 483-589 (941)
282 COG0653 SecA Preprotein transl 97.8 0.0023 5.1E-08 79.9 22.9 114 870-988 411-535 (822)
283 KOG0352|consensus 97.8 4.6E-05 1E-09 85.2 7.1 101 189-292 259-359 (641)
284 PF13871 Helicase_C_4: Helicas 97.8 5E-05 1.1E-09 83.8 7.2 85 226-313 52-144 (278)
285 TIGR00596 rad1 DNA repair prot 97.7 0.00072 1.6E-08 86.2 17.3 43 165-207 266-317 (814)
286 PRK12903 secA preprotein trans 97.5 0.0058 1.3E-07 76.5 20.6 128 168-305 409-544 (925)
287 TIGR00595 priA primosomal prot 97.5 0.00061 1.3E-08 83.6 12.3 92 198-292 271-378 (505)
288 COG0556 UvrB Helicase subunit 97.4 0.012 2.5E-07 68.9 20.6 138 169-310 430-572 (663)
289 PRK09401 reverse gyrase; Revie 97.4 0.0006 1.3E-08 90.9 10.8 102 169-280 315-429 (1176)
290 PF07517 SecA_DEAD: SecA DEAD- 97.3 0.0026 5.6E-08 70.6 13.6 122 542-679 74-210 (266)
291 COG3587 Restriction endonuclea 97.3 0.00086 1.9E-08 82.0 10.5 139 561-704 71-241 (985)
292 PF02562 PhoH: PhoH-like prote 97.3 0.00034 7.3E-09 74.4 5.5 147 546-711 5-161 (205)
293 KOG0925|consensus 97.2 0.0039 8.4E-08 71.6 13.5 58 944-1003 316-390 (699)
294 PRK05580 primosome assembly pr 97.2 0.0028 6E-08 80.9 13.4 94 198-294 439-548 (679)
295 TIGR01054 rgy reverse gyrase. 97.2 0.0015 3.3E-08 87.3 11.4 87 171-266 315-408 (1171)
296 PRK10536 hypothetical protein; 97.2 0.0059 1.3E-07 66.8 13.8 144 546-710 60-217 (262)
297 KOG4150|consensus 97.2 0.0018 3.9E-08 75.1 10.0 130 870-1004 507-644 (1034)
298 PRK14701 reverse gyrase; Provi 97.1 0.0015 3.2E-08 89.4 9.9 105 172-286 320-447 (1638)
299 COG1200 RecG RecG-like helicas 97.1 0.0036 7.8E-08 76.0 11.9 118 169-289 457-585 (677)
300 PRK12899 secA preprotein trans 97.0 0.028 6E-07 71.5 19.4 128 168-305 551-686 (970)
301 PRK14873 primosome assembly pr 97.0 0.006 1.3E-07 76.8 13.2 126 573-706 169-304 (665)
302 PRK12326 preprotein translocas 96.9 0.0074 1.6E-07 74.5 12.8 131 168-308 410-555 (764)
303 COG1205 Distinct helicase fami 96.8 0.0035 7.7E-08 81.1 9.9 132 169-305 290-430 (851)
304 PF09848 DUF2075: Uncharacteri 96.8 0.0045 9.8E-08 72.9 9.8 90 568-680 5-97 (352)
305 PF13604 AAA_30: AAA domain; P 96.8 0.011 2.4E-07 63.3 11.8 126 545-707 1-132 (196)
306 COG1203 CRISPR-associated heli 96.8 0.0057 1.2E-07 78.8 11.1 133 177-313 432-568 (733)
307 PRK12901 secA preprotein trans 96.7 0.064 1.4E-06 68.5 18.6 120 168-292 611-738 (1112)
308 KOG1803|consensus 96.6 0.011 2.3E-07 70.5 10.8 66 543-614 183-249 (649)
309 PF13307 Helicase_C_2: Helicas 96.6 0.0042 9.2E-08 64.7 6.4 79 885-970 6-92 (167)
310 PF13401 AAA_22: AAA domain; P 96.5 0.0035 7.6E-08 62.3 5.4 116 564-705 4-125 (131)
311 TIGR00376 DNA helicase, putati 96.5 0.025 5.4E-07 71.5 13.6 67 544-616 156-223 (637)
312 KOG1802|consensus 96.4 0.016 3.5E-07 69.1 10.2 146 544-704 409-601 (935)
313 KOG1132|consensus 96.3 0.027 5.8E-07 69.9 11.9 89 889-978 562-664 (945)
314 COG4098 comFA Superfamily II D 96.3 0.054 1.2E-06 60.2 12.8 116 173-293 293-414 (441)
315 PRK13103 secA preprotein trans 96.2 0.19 4.2E-06 64.1 19.4 121 167-292 431-588 (913)
316 COG1197 Mfd Transcription-repa 96.2 0.039 8.5E-07 71.2 13.1 118 174-296 792-912 (1139)
317 COG1204 Superfamily II helicas 96.1 0.013 2.9E-07 74.8 8.8 112 171-285 239-396 (766)
318 CHL00122 secA preprotein trans 96.1 0.21 4.5E-06 63.5 18.9 84 168-255 407-491 (870)
319 PF12340 DUF3638: Protein of u 96.1 0.0048 1E-07 66.2 3.7 73 543-618 21-93 (229)
320 cd00009 AAA The AAA+ (ATPases 96.1 0.054 1.2E-06 54.3 11.3 45 564-611 19-63 (151)
321 COG4096 HsdR Type I site-speci 95.9 0.029 6.2E-07 69.5 9.7 122 170-294 405-545 (875)
322 KOG1131|consensus 95.9 0.031 6.8E-07 65.0 9.2 60 544-603 15-74 (755)
323 PF13307 Helicase_C_2: Helicas 95.8 0.034 7.4E-07 57.9 8.7 80 182-268 6-93 (167)
324 KOG4150|consensus 95.8 0.04 8.7E-07 64.4 9.6 133 167-304 507-647 (1034)
325 KOG0951|consensus 95.7 0.027 5.9E-07 71.9 8.4 110 560-682 1155-1269(1674)
326 KOG0952|consensus 95.5 0.067 1.4E-06 67.5 10.6 119 180-301 344-495 (1230)
327 TIGR00348 hsdR type I site-spe 95.4 0.13 2.9E-06 65.7 13.6 108 185-295 514-649 (667)
328 TIGR01447 recD exodeoxyribonuc 95.4 0.13 2.9E-06 64.1 13.1 139 548-707 148-297 (586)
329 KOG0353|consensus 95.4 0.02 4.2E-07 63.5 5.0 91 185-278 317-407 (695)
330 PRK04296 thymidine kinase; Pro 95.3 0.051 1.1E-06 57.9 8.1 34 567-603 5-38 (190)
331 TIGR01448 recD_rel helicase, p 95.3 0.16 3.4E-06 65.4 13.8 135 543-708 321-455 (720)
332 smart00592 BRK domain in trans 95.2 0.019 4.2E-07 44.7 3.2 42 440-481 2-43 (45)
333 KOG0329|consensus 95.1 0.11 2.4E-06 55.1 9.5 45 242-286 302-346 (387)
334 PRK12723 flagellar biosynthesi 95.1 0.21 4.5E-06 59.0 12.8 132 566-722 176-314 (388)
335 PLN03025 replication factor C 95.0 0.29 6.4E-06 56.8 13.9 24 566-589 36-59 (319)
336 PF06465 DUF1087: Domain of Un 94.9 0.014 3.1E-07 49.0 1.7 42 1095-1142 21-62 (66)
337 PRK06526 transposase; Provisio 94.8 0.069 1.5E-06 59.5 7.6 109 552-705 90-201 (254)
338 TIGR02881 spore_V_K stage V sp 94.8 0.11 2.3E-06 58.6 9.1 26 565-590 43-68 (261)
339 COG1875 NYN ribonuclease and A 94.7 0.086 1.9E-06 59.5 7.8 152 541-708 223-390 (436)
340 smart00382 AAA ATPases associa 94.7 0.072 1.6E-06 52.9 6.9 44 565-611 3-46 (148)
341 TIGR01407 dinG_rel DnaQ family 94.7 0.16 3.4E-06 67.1 11.7 90 173-268 661-757 (850)
342 KOG0991|consensus 94.7 0.065 1.4E-06 56.5 6.2 103 562-701 46-148 (333)
343 PRK14956 DNA polymerase III su 94.6 0.15 3.4E-06 61.1 10.2 41 550-590 23-66 (484)
344 PRK10875 recD exonuclease V su 94.6 0.22 4.8E-06 62.4 12.0 141 546-707 153-303 (615)
345 PRK11773 uvrD DNA-dependent he 94.5 2.1 4.5E-05 55.7 20.9 56 545-606 9-65 (721)
346 TIGR03420 DnaA_homol_Hda DnaA 94.3 0.25 5.4E-06 54.2 10.4 93 563-705 37-132 (226)
347 PRK09112 DNA polymerase III su 94.2 0.13 2.9E-06 60.1 8.4 41 550-590 28-71 (351)
348 COG3421 Uncharacterized protei 93.7 0.067 1.5E-06 63.5 4.6 107 571-679 4-125 (812)
349 PF07533 BRK: BRK domain; Int 93.5 0.037 8E-07 43.4 1.4 42 439-480 3-44 (46)
350 PRK07003 DNA polymerase III su 93.4 0.32 7E-06 61.0 9.9 41 550-590 21-64 (830)
351 PRK08074 bifunctional ATP-depe 93.4 0.41 9E-06 63.7 11.6 95 172-270 738-839 (928)
352 PRK08181 transposase; Validate 93.3 0.56 1.2E-05 52.7 10.8 44 547-590 89-132 (269)
353 PF13245 AAA_19: Part of AAA d 93.2 0.28 6E-06 43.6 6.6 43 567-609 13-56 (76)
354 COG1199 DinG Rad3-related DNA 93.1 0.56 1.2E-05 60.4 12.1 81 183-268 477-560 (654)
355 PRK08084 DNA replication initi 93.0 0.57 1.2E-05 51.8 10.3 25 565-589 46-70 (235)
356 PRK06835 DNA replication prote 92.9 0.84 1.8E-05 52.9 11.9 48 544-591 159-210 (329)
357 PRK08116 hypothetical protein; 92.9 0.87 1.9E-05 51.3 11.8 44 564-610 114-157 (268)
358 PRK11889 flhF flagellar biosyn 92.9 1.3 2.8E-05 51.8 13.2 127 567-722 244-379 (436)
359 COG1484 DnaC DNA replication p 92.8 0.58 1.3E-05 52.2 10.2 115 551-705 92-209 (254)
360 CHL00181 cbbX CbbX; Provisiona 92.8 0.22 4.8E-06 56.6 7.0 27 564-590 59-85 (287)
361 COG4889 Predicted helicase [Ge 92.8 0.35 7.6E-06 59.9 8.7 85 210-295 500-586 (1518)
362 PF13177 DNA_pol3_delta2: DNA 92.7 1.7 3.7E-05 45.0 12.7 45 550-594 2-49 (162)
363 PRK14949 DNA polymerase III su 92.7 0.37 8E-06 61.7 9.1 23 568-590 42-64 (944)
364 PF06862 DUF1253: Protein of u 92.7 1.2 2.6E-05 53.1 12.8 127 871-999 280-414 (442)
365 PRK08727 hypothetical protein; 92.6 0.55 1.2E-05 51.9 9.6 24 567-590 44-67 (233)
366 PHA03333 putative ATPase subun 92.6 1.4 3E-05 54.7 13.3 143 546-707 170-333 (752)
367 PRK12402 replication factor C 92.5 0.46 1E-05 55.6 9.4 37 553-589 23-61 (337)
368 TIGR02880 cbbX_cfxQ probable R 92.4 0.24 5.3E-06 56.3 6.6 39 564-602 58-97 (284)
369 PRK06921 hypothetical protein; 92.4 0.68 1.5E-05 52.1 10.0 28 564-591 117-144 (266)
370 KOG1805|consensus 92.3 0.5 1.1E-05 59.7 9.2 146 545-707 669-831 (1100)
371 PRK12323 DNA polymerase III su 92.2 1.1 2.4E-05 55.6 12.1 23 568-590 42-64 (700)
372 PRK05703 flhF flagellar biosyn 92.1 1.4 3E-05 53.1 12.9 130 566-722 223-359 (424)
373 PRK11747 dinG ATP-dependent DN 92.0 1.1 2.3E-05 57.8 12.4 91 171-268 520-617 (697)
374 PRK07952 DNA replication prote 91.9 1.3 2.9E-05 48.9 11.4 44 566-616 101-144 (244)
375 PTZ00112 origin recognition co 91.9 0.89 1.9E-05 57.7 10.8 46 545-590 758-807 (1164)
376 PF00448 SRP54: SRP54-type pro 91.8 0.46 9.9E-06 50.9 7.4 131 568-720 5-140 (196)
377 smart00491 HELICc2 helicase su 91.7 0.61 1.3E-05 47.0 7.7 54 916-970 23-80 (142)
378 TIGR01073 pcrA ATP-dependent D 91.7 4.2 9.2E-05 53.0 17.6 54 545-604 4-58 (726)
379 PF06862 DUF1253: Protein of u 91.6 2.1 4.5E-05 51.1 13.2 127 168-296 280-414 (442)
380 PRK07994 DNA polymerase III su 91.4 1.3 2.8E-05 55.7 11.8 42 550-591 21-65 (647)
381 PRK05642 DNA replication initi 91.4 1.3 2.9E-05 48.8 10.8 38 667-704 98-138 (234)
382 KOG0989|consensus 91.3 0.59 1.3E-05 52.0 7.5 42 548-589 39-82 (346)
383 PRK14952 DNA polymerase III su 91.1 1.2 2.6E-05 55.6 11.1 41 550-590 18-61 (584)
384 PRK07764 DNA polymerase III su 91.0 1 2.3E-05 58.4 10.8 24 568-591 41-64 (824)
385 TIGR02768 TraA_Ti Ti-type conj 91.0 1.3 2.9E-05 57.3 11.8 129 543-707 350-478 (744)
386 PRK00149 dnaA chromosomal repl 91.0 1.1 2.3E-05 54.9 10.5 99 567-704 151-252 (450)
387 PRK07246 bifunctional ATP-depe 90.8 1.7 3.8E-05 56.9 12.6 90 173-268 635-726 (820)
388 PRK14974 cell division protein 90.8 1.9 4E-05 50.1 11.5 34 567-603 143-176 (336)
389 PRK14958 DNA polymerase III su 90.7 1.7 3.6E-05 53.7 11.8 41 550-590 21-64 (509)
390 PRK14960 DNA polymerase III su 90.7 0.92 2E-05 56.4 9.3 22 568-589 41-62 (702)
391 PRK08451 DNA polymerase III su 90.6 1.7 3.7E-05 53.4 11.6 24 568-591 40-63 (535)
392 TIGR00362 DnaA chromosomal rep 90.5 1.4 2.9E-05 53.2 10.7 99 567-704 139-240 (405)
393 PRK05707 DNA polymerase III su 90.4 1.1 2.4E-05 52.0 9.4 46 545-591 3-49 (328)
394 PRK14963 DNA polymerase III su 90.3 1.2 2.6E-05 54.8 10.0 42 550-591 19-63 (504)
395 PRK07940 DNA polymerase III su 90.3 0.71 1.5E-05 54.9 7.8 24 567-590 39-62 (394)
396 PRK06893 DNA replication initi 90.3 1.8 3.8E-05 47.7 10.5 25 567-591 42-66 (229)
397 cd01124 KaiC KaiC is a circadi 90.2 0.34 7.3E-06 51.3 4.6 48 567-617 2-49 (187)
398 PRK12902 secA preprotein trans 90.1 2.8 6E-05 53.7 12.9 84 168-255 422-506 (939)
399 PHA02533 17 large terminase pr 90.1 2.5 5.5E-05 52.3 12.6 146 544-706 58-210 (534)
400 COG0593 DnaA ATPase involved i 90.0 1.7 3.6E-05 51.4 10.3 54 666-719 175-235 (408)
401 TIGR03015 pepcterm_ATPase puta 90.0 2.1 4.6E-05 48.2 11.2 43 546-588 24-67 (269)
402 PRK06645 DNA polymerase III su 89.9 1.9 4.1E-05 53.0 11.1 41 550-590 26-69 (507)
403 TIGR02928 orc1/cdc6 family rep 89.8 1.9 4.2E-05 51.1 11.1 45 546-590 19-66 (365)
404 PRK14087 dnaA chromosomal repl 89.8 1.7 3.6E-05 52.9 10.6 101 567-704 144-247 (450)
405 PRK14951 DNA polymerase III su 89.8 1.7 3.7E-05 54.5 10.8 41 550-590 21-64 (618)
406 smart00573 HSA domain in helic 89.7 0.4 8.7E-06 42.2 3.8 52 310-361 22-73 (73)
407 PF05621 TniB: Bacterial TniB 89.7 1.9 4E-05 48.7 9.9 46 660-705 139-189 (302)
408 PRK07471 DNA polymerase III su 89.7 2 4.3E-05 50.7 10.7 43 550-592 24-69 (365)
409 PRK06647 DNA polymerase III su 89.6 1.7 3.7E-05 54.3 10.6 24 568-591 42-65 (563)
410 PF13173 AAA_14: AAA domain 89.5 2.2 4.8E-05 42.1 9.5 38 666-705 61-98 (128)
411 smart00492 HELICc3 helicase su 89.5 1.7 3.7E-05 43.8 8.7 46 220-267 32-79 (141)
412 PRK14957 DNA polymerase III su 89.5 2.2 4.8E-05 52.7 11.4 24 567-590 41-64 (546)
413 PRK08769 DNA polymerase III su 89.5 3.1 6.8E-05 47.9 11.9 48 544-591 3-53 (319)
414 PF13892 DBINO: DNA-binding do 89.5 1.6 3.4E-05 43.0 8.0 74 321-398 61-134 (139)
415 PRK14088 dnaA chromosomal repl 89.4 2.3 5E-05 51.7 11.4 101 566-704 132-235 (440)
416 PRK14961 DNA polymerase III su 89.4 2 4.4E-05 50.8 10.8 40 550-589 21-63 (363)
417 PRK08903 DnaA regulatory inact 89.4 2.4 5.2E-05 46.5 10.7 27 563-589 41-67 (227)
418 PRK13889 conjugal transfer rel 89.4 2.1 4.5E-05 56.6 11.6 131 543-709 344-474 (988)
419 TIGR00604 rad3 DNA repair heli 89.3 2.3 5E-05 55.1 12.0 94 172-269 508-618 (705)
420 PHA02544 44 clamp loader, smal 89.1 3.6 7.8E-05 47.7 12.4 41 666-707 100-142 (316)
421 PRK08058 DNA polymerase III su 89.1 2 4.2E-05 50.2 10.1 131 549-704 10-148 (329)
422 PRK14964 DNA polymerase III su 89.1 3.7 8E-05 50.1 12.6 26 566-591 37-62 (491)
423 PRK14962 DNA polymerase III su 89.1 2 4.4E-05 52.4 10.5 23 567-589 39-61 (472)
424 KOG0949|consensus 89.0 0.5 1.1E-05 59.5 5.2 79 208-291 963-1042(1330)
425 PRK14722 flhF flagellar biosyn 88.9 3.9 8.4E-05 48.1 12.3 125 563-714 136-266 (374)
426 KOG0922|consensus 88.9 1.9 4.2E-05 52.7 9.9 113 183-300 256-393 (674)
427 PF02399 Herpes_ori_bp: Origin 88.6 2.6 5.6E-05 53.4 11.0 113 169-292 267-385 (824)
428 PHA03368 DNA packaging termina 88.6 2.2 4.7E-05 52.8 10.1 126 567-704 257-389 (738)
429 smart00491 HELICc2 helicase su 88.5 1.5 3.3E-05 44.2 7.6 45 223-267 32-80 (142)
430 PRK12422 chromosomal replicati 88.5 1.1 2.5E-05 54.2 7.9 98 566-704 143-243 (445)
431 PRK08691 DNA polymerase III su 88.4 2 4.3E-05 54.1 9.8 24 567-590 41-64 (709)
432 PRK12377 putative replication 88.3 2.3 5.1E-05 47.1 9.6 43 565-610 102-144 (248)
433 PRK14948 DNA polymerase III su 88.3 3.1 6.6E-05 52.7 11.7 41 550-590 21-64 (620)
434 KOG1513|consensus 88.3 0.5 1.1E-05 57.9 4.4 66 229-297 851-924 (1300)
435 TIGR03345 VI_ClpV1 type VI sec 88.2 2.4 5.3E-05 55.7 11.2 37 553-589 195-233 (852)
436 COG1643 HrpA HrpA-like helicas 88.2 2.4 5.2E-05 54.7 10.7 111 184-300 258-390 (845)
437 PRK00440 rfc replication facto 88.1 5.8 0.00013 45.9 13.4 24 566-589 40-63 (319)
438 PF07529 HSA: HSA; InterPro: 87.9 0.6 1.3E-05 41.1 3.7 50 312-361 24-73 (73)
439 PRK00771 signal recognition pa 87.8 2.8 6.1E-05 50.4 10.5 25 566-590 97-121 (437)
440 TIGR01074 rep ATP-dependent DN 87.7 3.6 7.9E-05 53.1 12.3 65 546-616 2-68 (664)
441 PRK05896 DNA polymerase III su 87.6 4 8.6E-05 50.8 11.7 40 551-590 22-64 (605)
442 PRK14955 DNA polymerase III su 87.6 3.1 6.7E-05 49.9 10.7 41 550-590 21-64 (397)
443 COG0470 HolB ATPase involved i 87.5 1.8 3.8E-05 50.3 8.6 25 567-591 27-51 (325)
444 PRK06871 DNA polymerase III su 87.5 3.4 7.4E-05 47.8 10.5 47 546-592 3-52 (325)
445 PRK14086 dnaA chromosomal repl 87.4 2.6 5.7E-05 52.4 10.0 99 567-704 317-418 (617)
446 PRK07993 DNA polymerase III su 87.3 2.8 6E-05 48.9 9.8 47 545-591 2-51 (334)
447 PF05876 Terminase_GpA: Phage 87.2 0.69 1.5E-05 57.7 5.1 167 542-717 13-191 (557)
448 PRK14953 DNA polymerase III su 87.2 4.8 0.0001 49.4 12.2 40 550-589 21-63 (486)
449 PRK04195 replication factor C 87.1 5.3 0.00011 49.3 12.6 25 564-588 39-63 (482)
450 PRK05563 DNA polymerase III su 86.9 5.3 0.00012 50.0 12.6 23 568-590 42-64 (559)
451 PRK00411 cdc6 cell division co 86.7 6.7 0.00015 47.0 13.1 45 547-591 35-82 (394)
452 PF00580 UvrD-helicase: UvrD/R 86.6 0.99 2.1E-05 52.1 5.7 56 546-607 1-57 (315)
453 TIGR02639 ClpA ATP-dependent C 86.6 3.7 8.1E-05 53.4 11.5 28 563-590 202-229 (731)
454 PRK14954 DNA polymerase III su 86.6 3.5 7.5E-05 52.0 10.6 41 550-590 21-64 (620)
455 PF00004 AAA: ATPase family as 86.5 0.71 1.5E-05 45.5 3.9 34 568-607 2-35 (132)
456 PTZ00293 thymidine kinase; Pro 86.5 4.6 0.0001 43.4 10.0 35 568-605 8-42 (211)
457 COG3267 ExeA Type II secretory 86.5 5.1 0.00011 43.8 10.3 46 567-616 54-105 (269)
458 PRK12727 flagellar biosynthesi 86.5 11 0.00023 46.2 14.2 38 564-602 350-387 (559)
459 PRK06090 DNA polymerase III su 86.4 4 8.7E-05 47.0 10.3 48 545-592 3-53 (319)
460 PRK14950 DNA polymerase III su 86.3 2.3 5.1E-05 53.6 9.1 40 550-589 21-63 (585)
461 cd01121 Sms Sms (bacterial rad 86.3 4.3 9.4E-05 48.0 10.7 102 552-679 69-171 (372)
462 cd01120 RecA-like_NTPases RecA 86.2 3.3 7.2E-05 42.2 8.9 36 568-606 3-38 (165)
463 PF06733 DEAD_2: DEAD_2; Inte 86.2 0.42 9E-06 50.2 2.1 38 643-680 118-159 (174)
464 PRK14969 DNA polymerase III su 86.1 5.3 0.00011 49.7 11.9 23 568-590 42-64 (527)
465 COG0653 SecA Preprotein transl 86.0 1.9 4E-05 54.9 7.8 122 167-294 411-543 (822)
466 PRK09111 DNA polymerase III su 85.6 5.3 0.00012 50.2 11.6 42 550-591 29-73 (598)
467 PF00308 Bac_DnaA: Bacterial d 85.5 16 0.00034 39.9 14.0 38 666-703 97-137 (219)
468 PHA03372 DNA packaging termina 85.3 1.9 4.2E-05 52.5 7.2 111 561-682 200-315 (668)
469 PRK12724 flagellar biosynthesi 85.3 10 0.00022 45.2 13.0 125 567-722 226-361 (432)
470 KOG0950|consensus 85.2 1.3 2.9E-05 56.1 6.0 71 211-284 524-598 (1008)
471 PRK14965 DNA polymerase III su 85.0 4.7 0.0001 50.8 10.9 24 568-591 42-65 (576)
472 PRK14959 DNA polymerase III su 84.8 3.8 8.3E-05 51.2 9.7 24 567-590 41-64 (624)
473 PRK07133 DNA polymerase III su 84.6 4.1 8.8E-05 51.8 9.9 23 568-590 44-66 (725)
474 PRK04132 replication factor C 83.8 4.6 9.9E-05 52.4 10.1 49 666-715 630-679 (846)
475 TIGR02688 conserved hypothetic 83.7 4.1 8.8E-05 48.2 8.7 39 549-587 194-232 (449)
476 COG4626 Phage terminase-like p 83.5 7 0.00015 47.5 10.7 174 543-729 59-251 (546)
477 COG2256 MGS1 ATPase related to 83.3 3.9 8.4E-05 47.5 8.1 21 566-586 50-70 (436)
478 PRK13342 recombination factor 83.1 5 0.00011 48.4 9.7 22 566-587 38-59 (413)
479 KOG0921|consensus 82.8 8.1 0.00018 48.8 11.0 140 559-705 388-535 (1282)
480 TIGR00678 holB DNA polymerase 82.8 6.5 0.00014 41.7 9.5 24 567-590 17-40 (188)
481 PRK10865 protein disaggregatio 82.8 3.6 7.9E-05 54.3 8.9 36 554-589 187-224 (857)
482 COG1435 Tdk Thymidine kinase [ 82.7 3.4 7.4E-05 43.3 6.8 109 568-704 8-118 (201)
483 PF03354 Terminase_1: Phage Te 82.7 10 0.00022 46.8 12.3 131 548-691 1-146 (477)
484 PF05127 Helicase_RecD: Helica 82.5 0.81 1.8E-05 47.7 2.2 121 569-705 2-123 (177)
485 PRK00080 ruvB Holliday junctio 82.1 17 0.00037 42.3 13.4 24 565-588 52-75 (328)
486 smart00492 HELICc3 helicase su 81.7 5.1 0.00011 40.3 7.6 53 916-971 26-80 (141)
487 PRK06731 flhF flagellar biosyn 81.7 17 0.00037 40.9 12.5 125 565-719 76-210 (270)
488 PRK05986 cob(I)alamin adenolsy 81.2 3.6 7.7E-05 43.4 6.4 142 563-717 21-169 (191)
489 PRK09183 transposase/IS protei 81.1 7.2 0.00016 43.8 9.3 27 563-589 101-127 (259)
490 PRK08533 flagellar accessory p 81.1 15 0.00032 40.5 11.6 47 564-613 24-70 (230)
491 PHA02244 ATPase-like protein 81.1 12 0.00027 43.6 11.3 35 562-602 117-151 (383)
492 PRK13826 Dtr system oriT relax 80.9 10 0.00022 50.6 11.9 130 544-709 380-509 (1102)
493 KOG0442|consensus 80.9 28 0.0006 44.2 14.6 342 544-910 12-400 (892)
494 TIGR03689 pup_AAA proteasome A 80.8 6 0.00013 48.6 9.1 27 563-589 215-241 (512)
495 PF00265 TK: Thymidine kinase; 80.6 2.5 5.3E-05 44.4 5.0 35 568-605 5-39 (176)
496 KOG0737|consensus 80.3 3.9 8.5E-05 46.9 6.7 49 562-616 125-173 (386)
497 PF05496 RuvB_N: Holliday junc 80.1 3 6.4E-05 45.1 5.4 21 566-586 52-72 (233)
498 TIGR02397 dnaX_nterm DNA polym 79.5 6.6 0.00014 46.3 8.9 23 568-590 40-62 (355)
499 TIGR03117 cas_csf4 CRISPR-asso 79.3 12 0.00027 47.1 11.4 84 184-273 470-567 (636)
500 TIGR01242 26Sp45 26S proteasom 79.2 7.1 0.00015 46.3 9.0 25 564-588 156-180 (364)
No 1
>KOG0386|consensus
Probab=100.00 E-value=2.2e-149 Score=1313.55 Aligned_cols=744 Identities=63% Similarity=0.991 Sum_probs=679.6
Q ss_pred hccccchhhhhccchhhhhhhhHHHHhhhhhhhHHHhhhHHHHHHHHHHHHHhhCHHHHHHHHhhHhHHHHHHHHHhhHH
Q psy7773 309 YKLNMDEKEYHRNNTARTQKLNKAIINYHINAEKEQKKEQERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDE 388 (1281)
Q Consensus 309 ~K~~l~~~~~~~~~~~k~~kl~k~v~~~~~~~ekEe~k~~er~ekerl~~L~~~dee~y~kll~~~k~~rl~~ll~qtd~ 388 (1281)
..|...+..++.....+..++++++..+|.+.++++++++++++++|+++|+++|+|||++|++++||+|+++||+|||+
T Consensus 247 ~~h~~e~~~~~q~~~~r~~k~~~~v~~~h~~~er~~~r~~~r~ek~r~~~Lk~~DeE~Y~kl~dq~Kd~Rl~~LL~qt~~ 326 (1157)
T KOG0386|consen 247 LIHPKEFPEAQQLVNNRGNKQNKAVQQWHANQERERERRIDRIEKERASALKHNDEEGYRKLQDQKKDNRLSQLLSQTDS 326 (1157)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhhccccHHHHhhhhhhH
Confidence 34566777888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCCCCcCCcccccccccccceeecccccccCCCCCCCchhhHhh
Q psy7773 389 YISNLTQMVKEHKEEQQKKMREEKKKKKKSIKQKILDGNMDKLDLDESSQLEDLRITVKETNSDNKLRGEDAPPAKQIKE 468 (1281)
Q Consensus 389 ~~~~l~~~v~~~~~~~~~~~~~~~~~k~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1281)
|+.+|+.+|++|+.+ . .+.++. ..+ +
T Consensus 327 yl~sL~s~Vk~qk~~------------------------~----~~~~~~---~d~-------------------~---- 352 (1157)
T KOG0386|consen 327 YLPSLSSVVKGQKSE------------------------N----PDANSA---SDI-------------------S---- 352 (1157)
T ss_pred HHHHHHHHHHHhhcc------------------------c----cccchh---hhh-------------------h----
Confidence 999999999987531 0 000000 000 0
Q ss_pred hhhcCCCCccccCCCccCCCchhHhhhhccCCcccccCCccCCchhhccccccccccccccccccccccCcccccCcccH
Q psy7773 469 WLASHPGWEVVMEDSEDEGSEDEEMKEKKEEPSKAVGEKKTEDDEYKDAGEEATYYSIAHTYHEKVTEQASIMVNGKLKE 548 (1281)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~L~~ 548 (1281)
... ...+.+.+ +...+..+||.++|++.+.+..||+++.||+|++
T Consensus 353 ---------~i~------------------------~~ak~~~~--d~~~s~~~Yys~AH~I~E~v~~Qps~l~GG~Lk~ 397 (1157)
T KOG0386|consen 353 ---------GIS------------------------GSAKADVD--DHAESNGSYYSTAHPIKENVAKQPSSLQGGELKE 397 (1157)
T ss_pred ---------hhh------------------------hhhcchhh--hhhhcchhHHHhcchhhhccccCcchhcCCCCch
Confidence 000 00000000 0224567899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCcEEEEeC
Q psy7773 549 YQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSANVVAYKG 628 (1281)
Q Consensus 549 yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~~~~~~g 628 (1281)
||+.||+||+++|+|++|||||||||||||+|+|++|+||++.++..||+|||||+++|.||..||.+|+|++..+.|.|
T Consensus 398 YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~Ef~kWaPSv~~i~YkG 477 (1157)
T KOG0386|consen 398 YQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKWAPSVQKIQYKG 477 (1157)
T ss_pred hhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchhhccccccceeeeeeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEEeecCCCCC
Q psy7773 629 SPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLTGTPLQN 708 (1281)
Q Consensus 629 ~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllLTgTPl~n 708 (1281)
++..|..+......++|+|++|||+++++++..|.++.|.|+||||+|||||..|+++..+...|.+++|+||||||+||
T Consensus 478 tp~~R~~l~~qir~gKFnVLlTtyEyiikdk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN 557 (1157)
T KOG0386|consen 478 TPQQRSGLTKQQRHGKFNVLLTTYEYIIKDKALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQN 557 (1157)
T ss_pred CHHHHhhHHHHHhcccceeeeeeHHHhcCCHHHHhccCCcceeecccccccchhhHHHHHhhccccchhhhhhcCChhhh
Confidence 99999999998888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHHhhcCCCceEEEE
Q psy7773 709 KLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYII 788 (1281)
Q Consensus 709 ~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~lP~k~~~~v 788 (1281)
++.|||+||||+.|.+|+++..|.+||+.||+++|+++++++++...++++||+||+||+|||.|++|+..||++++.++
T Consensus 558 ~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~vi 637 (1157)
T KOG0386|consen 558 NLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVI 637 (1157)
T ss_pred ccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhcCCCccccCCccc
Q psy7773 789 KCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNNTVVSGPDIY 868 (1281)
Q Consensus 789 ~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (1281)
+|.||+.|+.+|.++.+......+. ..+.++...++|.+|+||+||||||+|..++..++.+... .+++
T Consensus 638 KC~mSalQq~lY~~m~~~g~l~~d~----~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~-------~dL~ 706 (1157)
T KOG0386|consen 638 KCDMSALQQSLYKQMQNKGQLLKDT----AKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDI-------KDLV 706 (1157)
T ss_pred heehhhhhHhhhHHHHhCCCCCcCc----hhccccchhhhhHhHHHHHhcCCchhhhhhccccccccCh-------hHHH
Confidence 9999999999999999888777665 4466778899999999999999999999887766555432 6899
Q ss_pred cccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEec
Q psy7773 869 RTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLST 948 (1281)
Q Consensus 869 ~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT 948 (1281)
+.|||+++|+++|++|++.|||||+||||+.++++|++||..++++|+|+||+|+.++|..++..||.|+++||+||+||
T Consensus 707 R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllst 786 (1157)
T KOG0386|consen 707 RVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLST 786 (1157)
T ss_pred HhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCcCCC
Q psy7773 949 RAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDEKVIQAGMFDQ 1028 (1281)
Q Consensus 949 ~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~~~~K~~l~~~vi~~g~~~~ 1028 (1281)
+|||+|||||+||+||+||++|||+++.||.+|||||||+++|+|+||++.+|+||+|+..+.+|++++.+||++|+|++
T Consensus 787 ragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviqag~fdn 866 (1157)
T KOG0386|consen 787 RAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQAGKFDN 866 (1157)
T ss_pred cccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcCchHhhhhcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHhccCCchhhcCCCCCHHHHHHHHhhCHHHHHHHHHhhHHHhcCCC----CcccccccCCCcccccC
Q psy7773 1029 KSTGSERHEFLQTILHQDDEEEEENEVPDDETVNQLIARTEDELTLFQKMDAERRKGET----KPRLVEIKELPDWMVKD 1104 (1281)
Q Consensus 1029 ~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 1104 (1281)
++++.+++.+|+.|+....++++ +++++++.||.||+|+++|+++|.+||.++.+.+. .|||+++.++|+|+.+.
T Consensus 867 ~st~~eR~~~Le~~l~~~~~~~~-~~v~~~~~ln~~larseeE~~~f~~md~~r~~~e~~~~~k~rl~ee~e~p~~i~~~ 945 (1157)
T KOG0386|consen 867 KSTAEEREMFLEQLLEMEGDEEE-EEVPDDEVLNSMLARSEEEFELFHKMDEERRATENQQEKKPRLVEEAELPADIYKR 945 (1157)
T ss_pred CCcHHHHHHHHHHHHhCCCcccc-ccCCcHHHHHHHHhcchHHHHHHHHhhHHHHhhhhhccccchhhhhhhcHHHHHhc
Confidence 99999999999999988765444 78999999999999999999999999999987433 68999999999999988
Q ss_pred chHHhhhhHHHHHHHHHHHHhcccccccccccccCCCcCHHHHHHHhhhcCCCC
Q psy7773 1105 DDEVENSMYEEEREREKEEALMGRGSRQRKQVDYTDSLTDQEWLKAIEDDGADD 1158 (1281)
Q Consensus 1105 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~ 1158 (1281)
+..+.....+.+ ....+|+|+|+||.|.|+|++++.+|+++++++.+++
T Consensus 946 ~~~~~~~~~~~~-----~~~~~~rg~r~Rkev~y~d~~te~q~~k~~e~~~~~~ 994 (1157)
T KOG0386|consen 946 DQGVERLSEEEE-----EEKILGRGRRARKEVVYSDRLTEMQWLKENESVNKED 994 (1157)
T ss_pred chhhhhhhhhhh-----hhccccccccccceeecccccchhhhhhhcccccccc
Confidence 776555444332 2334899999999999999999999999988765433
No 2
>KOG0385|consensus
Probab=100.00 E-value=4.5e-115 Score=996.83 Aligned_cols=508 Identities=51% Similarity=0.859 Sum_probs=458.1
Q ss_pred cCcccccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHH
Q psy7773 537 QASIMVNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEK 616 (1281)
Q Consensus 537 ~p~~~~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~ 616 (1281)
+|.++.+|+|||||++|++||.++|.++.||||||+||||||+|+|+++.|+....+..||+||+||.|++.||.+||.+
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~r 238 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFKR 238 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHHH
Confidence 78888889999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred HCCCCcEEEEeCCHHHHHHHHh-hhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhcc
Q psy7773 617 WAPSANVVAYKGSPLARRALQG-RMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNS 695 (1281)
Q Consensus 617 ~~p~~~~~~~~g~~~~r~~~~~-~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~ 695 (1281)
|+|++++++|+|++..|..+.. .+..+.|+|+||||++.+++.+.|..+.|.|+|||||||+||.+|.+++.+..+ .+
T Consensus 239 f~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f-~~ 317 (971)
T KOG0385|consen 239 FTPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKSFLKKFNWRYLVIDEAHRIKNEKSKLSKILREF-KT 317 (971)
T ss_pred hCCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHHHHhcCCceEEEechhhhhcchhhHHHHHHHHh-cc
Confidence 9999999999999999977654 445669999999999999999999999999999999999999999999999876 99
Q ss_pred CcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHH
Q psy7773 696 SHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKE 775 (1281)
Q Consensus 696 ~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~ 775 (1281)
.+||||||||+|||+.|||+|||||.|++|++.+.|..||.... .+.....+.+||.+|+||+|||+|.+
T Consensus 318 ~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~----------~~~~~e~v~~Lh~vL~pFlLRR~K~d 387 (971)
T KOG0385|consen 318 DNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTN----------CEGDQELVSRLHKVLRPFLLRRIKSD 387 (971)
T ss_pred cceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccc----------cccCHHHHHHHHhhhhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998642 11222368999999999999999999
Q ss_pred HhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhh
Q psy7773 776 VESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHI 855 (1281)
Q Consensus 776 v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~ 855 (1281)
|+..|||+.+.+++|+||..|+.+|..++........+... .....++|++||||+||||||||+++++
T Consensus 388 Ve~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~-----~~k~kL~NI~mQLRKccnHPYLF~g~eP------ 456 (971)
T KOG0385|consen 388 VEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGK-----GEKTKLQNIMMQLRKCCNHPYLFDGAEP------ 456 (971)
T ss_pred HhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhccccc-----chhhHHHHHHHHHHHhcCCccccCCCCC------
Confidence 99999999999999999999999999998877665544322 2467899999999999999999987543
Q ss_pred cCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhc
Q psy7773 856 GQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFN 935 (1281)
Q Consensus 856 ~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn 935 (1281)
......+..++..||||.+|+++|+++++.||||||||||+.|||+|++||..+||.|+||||+|+.++|..+|+.||
T Consensus 457 --g~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn 534 (971)
T KOG0385|consen 457 --GPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFN 534 (971)
T ss_pred --CCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcC
Confidence 244566788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHHHHHHHH
Q psy7773 936 EPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLN 1015 (1281)
Q Consensus 936 ~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~~~~K~~ 1015 (1281)
.+++.+||||+||+|||+||||++||+||+||++|||+.++||++|||||||+++|+||||||.+|||++|+.|+..|+.
T Consensus 535 ~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~ 614 (971)
T KOG0385|consen 535 APPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLR 614 (971)
T ss_pred CCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcC-CCCCChhhHHHHHHHHhccCCch---hhcCCCCCHHHHHHHHhhCHHH
Q psy7773 1016 MDEKVIQAGMF-DQKSTGSERHEFLQTILHQDDEE---EEENEVPDDETVNQLIARTEDE 1071 (1281)
Q Consensus 1016 l~~~vi~~g~~-~~~~~~~~~~~~l~~il~~~~~~---~~~~~~~~~~~~~~~~~~~~~e 1071 (1281)
|++.||+.|.. .+.+.+ .....+-.++..+.+. ..+.... + +|+.+|.++++.
T Consensus 615 Ld~~VIq~g~l~~~~~~~-~~k~~~l~~~r~g~~~~f~~~es~~~-d-Did~il~~~e~k 671 (971)
T KOG0385|consen 615 LDKLVIQQGRLEEQKSNG-LGKDELLNLLRFGADPVFESKESTIS-D-DIDRILERGEEK 671 (971)
T ss_pred hhhhhhccCchhhhhccc-cchHHHHHHHHcCchhhhhhcccccc-h-hHHHHHHhhhhh
Confidence 99999999933 444444 3334444556555432 2222222 3 899999999854
No 3
>KOG0384|consensus
Probab=100.00 E-value=6.8e-108 Score=980.42 Aligned_cols=520 Identities=45% Similarity=0.764 Sum_probs=469.4
Q ss_pred ccccccccCcccccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHH
Q psy7773 530 YHEKVTEQASIMVNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSN 609 (1281)
Q Consensus 530 ~~~~~~~~p~~~~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~ 609 (1281)
--.++..||.++.+.+||+||++|++||+..|.++.|||||||||||||+|+|++|.+|+......||+|||||.|++.+
T Consensus 355 ~~~Kle~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~ 434 (1373)
T KOG0384|consen 355 RFRKLEKQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITA 434 (1373)
T ss_pred hHHHhhcCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHH
Confidence 34567789999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred HHHHHHHHCCCCcEEEEeCCHHHHHHHHhhh--c-----cCCccEEEechHHHhhcccccccCceeEEEEeCCccccccc
Q psy7773 610 WVLEFEKWAPSANVVAYKGSPLARRALQGRM--K-----NSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHH 682 (1281)
Q Consensus 610 W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~--~-----~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~ 682 (1281)
|++||..|+ .+++++|+|+...|..++... . .-+|+++||||+++.++...|..++|.+++||||||+||..
T Consensus 435 W~~ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~ 513 (1373)
T KOG0384|consen 435 WEREFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDE 513 (1373)
T ss_pred HHHHHHHHh-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchH
Confidence 999999999 999999999999998877532 1 23799999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHH
Q psy7773 683 CKLTQTLNTFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHK 762 (1281)
Q Consensus 683 s~~~~~l~~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~ 762 (1281)
|.++..|..+ ...+|||+||||+||++.|||+||+||+|+.|.+...|...|.. .....++.||.
T Consensus 514 ~~l~~~l~~f-~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~--------------~~e~~~~~L~~ 578 (1373)
T KOG0384|consen 514 SKLYESLNQF-KMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDE--------------ETEEQVRKLQQ 578 (1373)
T ss_pred HHHHHHHHHh-cccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcc--------------hhHHHHHHHHH
Confidence 9999999875 99999999999999999999999999999999999999877632 12234889999
Q ss_pred hhhHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCcc
Q psy7773 763 VLRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPF 842 (1281)
Q Consensus 763 ~l~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~ 842 (1281)
.|+||||||+|++|++.||++.+.++.|.||+.|+.+|++++.+++..+.... .++..+++|++|.|++||||||
T Consensus 579 ~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~-----~g~~~~lLNimmELkKccNHpy 653 (1373)
T KOG0384|consen 579 ILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGA-----KGSTPSLLNIMMELKKCCNHPY 653 (1373)
T ss_pred HhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccC-----CCCCchHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999998887654322 2334789999999999999999
Q ss_pred chhhhHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCC
Q psy7773 843 MFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTT 922 (1281)
Q Consensus 843 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~ 922 (1281)
|+.+.+..+...+...........++..|||+-+|++||.+|+..||||||||||+.|||+|++||..+||+|-||||++
T Consensus 654 Li~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsv 733 (1373)
T KOG0384|consen 654 LIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSV 733 (1373)
T ss_pred ccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCc
Confidence 99999888776655321112334678899999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCH
Q psy7773 923 KSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSV 1002 (1281)
Q Consensus 923 ~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~ti 1002 (1281)
..+.|+.+|+.||+++|+.|||||||+|||+||||.+||||||||++|||++++||+.|||||||++.|.||||||.+||
T Consensus 734 rgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~Tv 813 (1373)
T KOG0384|consen 734 RGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTV 813 (1373)
T ss_pred chHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcCCCCC--ChhhHHHHHHHHhccCC-----chhhcCCCCCHHHHHHHHhhCHH
Q psy7773 1003 EERILAAARYKLNMDEKVIQAGMFDQKS--TGSERHEFLQTILHQDD-----EEEEENEVPDDETVNQLIARTED 1070 (1281)
Q Consensus 1003 Ee~I~~~~~~K~~l~~~vi~~g~~~~~~--~~~~~~~~l~~il~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1281)
|+.|++++..||.|+++|||.+...... ...-..+.|.+||+++. +++.+...++.++|++||.|.+.
T Consensus 814 EeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaILKfGA~~lfke~ene~s~~~e~DIDeIL~rae~ 888 (1373)
T KOG0384|consen 814 EEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAILKFGAYELFKEEENEESKFCEMDIDEILERAET 888 (1373)
T ss_pred HHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHHHhchHHhhhccccccccccccCHHHHHhhccc
Confidence 9999999999999999999987763322 22335677899999876 33444556777899999999886
No 4
>KOG0391|consensus
Probab=100.00 E-value=3.6e-101 Score=901.91 Aligned_cols=527 Identities=41% Similarity=0.737 Sum_probs=450.5
Q ss_pred cccccCcccccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHH
Q psy7773 533 KVTEQASIMVNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVL 612 (1281)
Q Consensus 533 ~~~~~p~~~~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~ 612 (1281)
.+..+.+.++.|.||+||..|++||+.+|++++|||||||||||||||+|+|++||....+++||+|||||++++.||..
T Consensus 603 qVktpvPsLLrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEM 682 (1958)
T KOG0391|consen 603 QVKTPVPSLLRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEM 682 (1958)
T ss_pred eeccCchHHHHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhH
Confidence 34455677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCcEEEEeCCHHHHHHHH-hhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHh
Q psy7773 613 EFEKWAPSANVVAYKGSPLARRALQ-GRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNT 691 (1281)
Q Consensus 613 E~~~~~p~~~~~~~~g~~~~r~~~~-~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~ 691 (1281)
||++|||+++++.|.|+...|+..+ ++.+.+.|+|+||+|..+..+...|....|.|+|+||||++||+.+..|++|..
T Consensus 683 ElKRwcPglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIKnfksqrWQAlln 762 (1958)
T KOG0391|consen 683 ELKRWCPGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIKNFKSQRWQALLN 762 (1958)
T ss_pred HHhhhCCcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhcchhHHHHHHHhc
Confidence 9999999999999999999987654 577788999999999999999999999999999999999999999999999988
Q ss_pred hhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHH
Q psy7773 692 FYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRR 771 (1281)
Q Consensus 692 ~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR 771 (1281)
+ ++.+||||||||+||++.|||+||+||+|..|.+.+.|..||..|.... ++.+.+.....+.+||++|+||+|||
T Consensus 763 f-nsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgm---iEgsqeyn~klV~RLHkVlrPfiLRR 838 (1958)
T KOG0391|consen 763 F-NSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGM---IEGSQEYNHKLVIRLHKVLRPFILRR 838 (1958)
T ss_pred c-chhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhh---cccchhhchHHHHHHHHHhHHHHHHH
Confidence 6 9999999999999999999999999999999999999999999998543 33455666778999999999999999
Q ss_pred hHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhh----
Q psy7773 772 LKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNI---- 847 (1281)
Q Consensus 772 ~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~---- 847 (1281)
+|.+|+++||.|++++|+|.||..|+.||+.+.... ..+.....+++.+++|++|+||+|||||-||...
T Consensus 839 lK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~------~TKetLkSGhfmsVlnilmqLrKvCNHPnLfEpRpv~s 912 (1958)
T KOG0391|consen 839 LKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQP------GTKETLKSGHFMSVLNILMQLRKVCNHPNLFEPRPVGS 912 (1958)
T ss_pred HHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhcc------chhhHhhcCchhHHHHHHHHHHHHcCCCCcCCCCCCCc
Confidence 999999999999999999999999999999875432 1222334577899999999999999999765210
Q ss_pred ---------------HHHHHh-------------------------------------hh--------------------
Q psy7773 848 ---------------EEKYCQ-------------------------------------HI-------------------- 855 (1281)
Q Consensus 848 ---------------~~~~~~-------------------------------------~~-------------------- 855 (1281)
...+.. .+
T Consensus 913 sfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~~g~~F~ 992 (1958)
T KOG0391|consen 913 SFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIPTFAGAPFQ 992 (1958)
T ss_pred ccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCccccccccc
Confidence 000000 00
Q ss_pred -------------------------------------------cCCCc--------------------------------
Q psy7773 856 -------------------------------------------GQNNT-------------------------------- 860 (1281)
Q Consensus 856 -------------------------------------------~~~~~-------------------------------- 860 (1281)
...+.
T Consensus 993 ~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~t~pl~~ 1072 (1958)
T KOG0391|consen 993 TSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVPTQPLLR 1072 (1958)
T ss_pred cchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeecccccccccc
Confidence 00000
Q ss_pred -----------------cccCC----------------------------------------------------------
Q psy7773 861 -----------------VVSGP---------------------------------------------------------- 865 (1281)
Q Consensus 861 -----------------~~~~~---------------------------------------------------------- 865 (1281)
...++
T Consensus 1073 ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~APvyg~ 1152 (1958)
T KOG0391|consen 1073 APGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVNAPVYGR 1152 (1958)
T ss_pred CCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhccCcccch
Confidence 00000
Q ss_pred --------------------------------------------------------------------------------
Q psy7773 866 -------------------------------------------------------------------------------- 865 (1281)
Q Consensus 866 -------------------------------------------------------------------------------- 865 (1281)
T Consensus 1153 e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~~~qlrsel 1232 (1958)
T KOG0391|consen 1153 ELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQQLRSEL 1232 (1958)
T ss_pred hhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHHHHHHHHHh
Confidence
Q ss_pred ---------------------ccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCCh
Q psy7773 866 ---------------------DIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKS 924 (1281)
Q Consensus 866 ---------------------~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~ 924 (1281)
-+...|||++.|.-+|.+|+..|||||||+||+.|||+|+.+|.++||-|+||||+++.
T Consensus 1233 ~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~v 1312 (1958)
T KOG0391|consen 1233 APYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSV 1312 (1958)
T ss_pred ccccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccH
Confidence 00011999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHH
Q psy7773 925 EDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEE 1004 (1281)
Q Consensus 925 ~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe 1004 (1281)
++|+.++++||. +..+|||||||++||.||||++||||||||+||||.++.||++|||||||+++|+|||||+..|||+
T Consensus 1313 EqRQaLmerFNa-D~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEe 1391 (1958)
T KOG0391|consen 1313 EQRQALMERFNA-DRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEE 1391 (1958)
T ss_pred HHHHHHHHHhcC-CCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHH
Confidence 999999999998 6889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCcCCCCCChhhHHHHHHHHhccCCc--------hhhcCCCCCHHH-HHHHHhhCHHHHH
Q psy7773 1005 RILAAARYKLNMDEKVIQAGMFDQKSTGSERHEFLQTILHQDDE--------EEEENEVPDDET-VNQLIARTEDELT 1073 (1281)
Q Consensus 1005 ~I~~~~~~K~~l~~~vi~~g~~~~~~~~~~~~~~l~~il~~~~~--------~~~~~~~~~~~~-~~~~~~~~~~e~~ 1073 (1281)
+|+.++..|..+.+.+|++|.|...... .....++|..... ..++..+..++. +...|++.++|-.
T Consensus 1392 niLkkanqKr~L~evaiqggdfTt~ff~---q~ti~dLFd~~~p~s~~~~~~~ad~~v~~see~~le~alA~aede~d 1466 (1958)
T KOG0391|consen 1392 NILKKANQKRMLDEVAIQGGDFTTAFFK---QRTIRDLFDVYLPESDVGVPAKADEFVVASEEPSLEVALAPAEDEED 1466 (1958)
T ss_pred HHHhhhhHHHHHHHHhhccCCccHHHHh---hhhHHHHhcCCCccccCCCCccchhhhhhcCcchHHHHhhhhcchHH
Confidence 9999999999999999999988654332 2223344444221 112222222333 7788888877644
No 5
>KOG0388|consensus
Probab=100.00 E-value=5.1e-98 Score=842.35 Aligned_cols=473 Identities=46% Similarity=0.827 Sum_probs=420.3
Q ss_pred cccccCcccccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHH
Q psy7773 533 KVTEQASIMVNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVL 612 (1281)
Q Consensus 533 ~~~~~p~~~~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~ 612 (1281)
....||.+ +.++|++||+.|++||+.+|.+|.|||||||||||||+|+|+++++|.+.++.+||||||+|+|+|.||..
T Consensus 556 ~tV~qPki-l~ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaq 634 (1185)
T KOG0388|consen 556 RTVPQPKI-LKCTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQ 634 (1185)
T ss_pred eeccCchh-hhhhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHH
Confidence 34456665 57899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCcEEEEeCCHHHHHHHHhh-------hccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHH
Q psy7773 613 EFEKWAPSANVVAYKGSPLARRALQGR-------MKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKL 685 (1281)
Q Consensus 613 E~~~~~p~~~~~~~~g~~~~r~~~~~~-------~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~ 685 (1281)
||.+|+|.++++.|.|++..|+.++.. .....|+|+||||+.+..+..+|.+++|.|+|+|||+-||...|..
T Consensus 635 EisrFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qkvKWQYMILDEAQAIKSSsS~R 714 (1185)
T KOG0388|consen 635 EISRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQKVKWQYMILDEAQAIKSSSSSR 714 (1185)
T ss_pred HHHHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHhhhhhheehhHHHHhhhhhhhH
Confidence 999999999999999999999887652 2568899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccc-cCCHHHHHHHHHHHHHhh
Q psy7773 686 TQTLNTFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKV-ELNEEETILIIRRLHKVL 764 (1281)
Q Consensus 686 ~~~l~~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~-~~~~~~~~~~~~~L~~~l 764 (1281)
|+.|..+ +|+.||||||||+||+..|||+||+|++|.+|.+.++|.+||.+.+....+.. .+++ ..+++||.+|
T Consensus 715 WKtLLsF-~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tlne----qqL~RLH~IL 789 (1185)
T KOG0388|consen 715 WKTLLSF-KCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTLNE----QQLQRLHAIL 789 (1185)
T ss_pred HHHHhhh-hccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCcCH----HHHHHHHHHH
Confidence 9999876 99999999999999999999999999999999999999999998876544322 2222 3478999999
Q ss_pred hHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccch
Q psy7773 765 RPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMF 844 (1281)
Q Consensus 765 ~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~ 844 (1281)
.||||||.|++|...|..+++..|.|.||..|+.+|+.+.... +...+.+++||||++||||-||
T Consensus 790 KPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~i---------------S~~E~~~~vmQlrKVCNHPdLF 854 (1185)
T KOG0388|consen 790 KPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSI---------------SSMEMENLVMQLRKVCNHPDLF 854 (1185)
T ss_pred hHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHh---------------hHHHHHHHHHHHHHhcCChHHH
Confidence 9999999999999999999999999999999999999986532 1334456999999999999776
Q ss_pred hhhHHH------------------------------------------------HHhh---h-cCCCc------------
Q psy7773 845 QNIEEK------------------------------------------------YCQH---I-GQNNT------------ 860 (1281)
Q Consensus 845 ~~~~~~------------------------------------------------~~~~---~-~~~~~------------ 860 (1281)
...+.. .+.- . +....
T Consensus 855 er~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~ 934 (1185)
T KOG0388|consen 855 ERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKY 934 (1185)
T ss_pred hhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeecc
Confidence 322100 0000 0 00000
Q ss_pred ---------------------------------------------------c----------------------------
Q psy7773 861 ---------------------------------------------------V---------------------------- 861 (1281)
Q Consensus 861 ---------------------------------------------------~---------------------------- 861 (1281)
+
T Consensus 935 G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~ 1014 (1185)
T KOG0388|consen 935 GGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTT 1014 (1185)
T ss_pred CCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccc
Confidence 0
Q ss_pred ---ccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCC
Q psy7773 862 ---VSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPE 938 (1281)
Q Consensus 862 ---~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~ 938 (1281)
+....++..|||+..|+.+|+++++.|||||+|.||+.|+++|++||..+||.|+||||+.+..+|..++.+|+.
T Consensus 1015 i~~Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~-- 1092 (1185)
T KOG0388|consen 1015 IYVPPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA-- 1092 (1185)
T ss_pred eecCcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC--
Confidence 000012456999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHHHHHHHHHHH
Q psy7773 939 SKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDE 1018 (1281)
Q Consensus 939 ~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~~~~K~~l~~ 1018 (1281)
+++||||+||+|||+||||++||||||||++|||..+.||++||||.||+++|.||||++.|||||+|+.++.+|..+..
T Consensus 1093 sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq 1172 (1185)
T KOG0388|consen 1093 SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQ 1172 (1185)
T ss_pred CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcCCC
Q psy7773 1019 KVIQAGMFDQ 1028 (1281)
Q Consensus 1019 ~vi~~g~~~~ 1028 (1281)
.|+.+|.+..
T Consensus 1173 ~Vm~G~~~qg 1182 (1185)
T KOG0388|consen 1173 MVMHGNIFQG 1182 (1185)
T ss_pred HHHcCCcccC
Confidence 9999877653
No 6
>KOG0389|consensus
Probab=100.00 E-value=2.4e-94 Score=830.12 Aligned_cols=501 Identities=43% Similarity=0.687 Sum_probs=424.9
Q ss_pred ccccCcccc-cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHH
Q psy7773 534 VTEQASIMV-NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVL 612 (1281)
Q Consensus 534 ~~~~p~~~~-~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~ 612 (1281)
+..||+.+- +.+|+|||+.||+||.-+|.++.+||||||||||||+|+|+|+++|.+. +..||+|||||+|++.||.+
T Consensus 387 ~~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~-g~~gpHLVVvPsSTleNWlr 465 (941)
T KOG0389|consen 387 ITEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQI-GNPGPHLVVVPSSTLENWLR 465 (941)
T ss_pred cccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHc-CCCCCcEEEecchhHHHHHH
Confidence 445776553 5699999999999999999999999999999999999999999999855 55899999999999999999
Q ss_pred HHHHHCCCCcEEEEeCCHHHHHHHHhhhccC--CccEEEechHHHhh---cccccccCceeEEEEeCCccccccchHHHH
Q psy7773 613 EFEKWAPSANVVAYKGSPLARRALQGRMKNS--KFNVLLTTYEFIIK---DKSVLSKIQWKCMIIDEGHRMKNHHCKLTQ 687 (1281)
Q Consensus 613 E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~--~~~vvItTye~l~~---~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~ 687 (1281)
||.+|||.++|..|+|+...|+.++..+... +|+|+||||..+.. ++.+|...+|+++|+||||.+||..|..++
T Consensus 466 Ef~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~ 545 (941)
T KOG0389|consen 466 EFAKWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYK 545 (941)
T ss_pred HHHHhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHHHH
Confidence 9999999999999999999999988776544 89999999998865 578899999999999999999999999999
Q ss_pred HHHhhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCC-hhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhH
Q psy7773 688 TLNTFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKS-CSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRP 766 (1281)
Q Consensus 688 ~l~~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~-~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 766 (1281)
.|..+ ++.+||||||||+|||+.|||+||.|++|..|.+ ...+...|...-...+... +.......+.+...++.|
T Consensus 546 ~LM~I-~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e--~~~l~qerIsrAK~im~P 622 (941)
T KOG0389|consen 546 HLMSI-NANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIE--NALLSQERISRAKTIMKP 622 (941)
T ss_pred Hhccc-cccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhh--HHHHHHHHHHHHHHhhhH
Confidence 99987 8999999999999999999999999999999964 4566666654332211110 111122357788999999
Q ss_pred HHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhh
Q psy7773 767 FLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQN 846 (1281)
Q Consensus 767 ~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~ 846 (1281)
|+|||.|.+|.++||+|..++.+|.|+..|+.+|..+..........-...... .+ -+.+|+||+++|||.|+..
T Consensus 623 FILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~----~~-~~vlmqlRK~AnHPLL~R~ 697 (941)
T KOG0389|consen 623 FILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSEL----KS-GNVLMQLRKAANHPLLFRS 697 (941)
T ss_pred HHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhcccccccccc----cc-chHHHHHHHHhcChhHHHH
Confidence 999999999999999999999999999999999999876542111111111000 11 5689999999999999854
Q ss_pred hHH--------------------------------------HHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcC
Q psy7773 847 IEE--------------------------------------KYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETK 888 (1281)
Q Consensus 847 ~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~ 888 (1281)
.-. .+|..+.....+....+.|-.|||+..|..+|++++..|
T Consensus 698 ~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G 777 (941)
T KOG0389|consen 698 IYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKG 777 (941)
T ss_pred hccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcC
Confidence 311 123333333344455678889999999999999999999
Q ss_pred CeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCC
Q psy7773 889 HRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDS 968 (1281)
Q Consensus 889 ~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~ 968 (1281)
+||||||||+.|||||+.+|..+|++|+||||+|....|+.+|+.||. +..+||||+||+|||.||||++||+||+||.
T Consensus 778 ~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~-d~difVFLLSTKAGG~GINLt~An~VIihD~ 856 (941)
T KOG0389|consen 778 DRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNT-DKDIFVFLLSTKAGGFGINLTCANTVIIHDI 856 (941)
T ss_pred CEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhcc-CCceEEEEEeeccCcceecccccceEEEeec
Confidence 999999999999999999999999999999999999999999999998 4569999999999999999999999999999
Q ss_pred CCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCCChhhHHHHHHHHhc
Q psy7773 969 DWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERHEFLQTILH 1044 (1281)
Q Consensus 969 ~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~~~~K~~l~~~vi~~g~~~~~~~~~~~~~~l~~il~ 1044 (1281)
++||..+.||.+||||+||+++|+|||||+++||||.|+..+..|+.|...+...|.............+|...+.
T Consensus 857 dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k~~~~e~~~~v~~lL~~~~~ 932 (941)
T KOG0389|consen 857 DFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGKGVEDEGEKTVGKLLETELY 932 (941)
T ss_pred CCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCccchhhhhhhHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999887766554443344445544443
No 7
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=1.2e-91 Score=880.06 Aligned_cols=511 Identities=46% Similarity=0.815 Sum_probs=449.0
Q ss_pred ccccCcccccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHH
Q psy7773 534 VTEQASIMVNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLE 613 (1281)
Q Consensus 534 ~~~~p~~~~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E 613 (1281)
+..+|+.+. ++|+|||+.||+||+.++.++.||||||+||||||+|+|+++.++....+..+|+|||||.+++.||..|
T Consensus 159 l~~qP~~i~-~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~E 237 (1033)
T PLN03142 159 LLVQPSCIK-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNE 237 (1033)
T ss_pred eccCChHhc-cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHH
Confidence 345777654 8999999999999999999999999999999999999999999998777888999999999999999999
Q ss_pred HHHHCCCCcEEEEeCCHHHHHHHHh-hhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhh
Q psy7773 614 FEKWAPSANVVAYKGSPLARRALQG-RMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTF 692 (1281)
Q Consensus 614 ~~~~~p~~~~~~~~g~~~~r~~~~~-~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~ 692 (1281)
|.+|+|.+.++.|+|+...+..... ......++|+||||+++.++...|..+.|++|||||||++||..+++++++..+
T Consensus 238 i~kw~p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L 317 (1033)
T PLN03142 238 IRRFCPVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTALKRFSWRYIIIDEAHRIKNENSLLSKTMRLF 317 (1033)
T ss_pred HHHHCCCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHHhccCCCCEEEEcCccccCCHHHHHHHHHHHh
Confidence 9999999999999999887765443 234567999999999999999999999999999999999999999999999876
Q ss_pred hccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHh
Q psy7773 693 YNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRL 772 (1281)
Q Consensus 693 ~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~ 772 (1281)
.+.+||+|||||++|++.|||+||+||.|+.|++...|..||..+.. ......+..||.+|+||++||+
T Consensus 318 -~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~----------~~~~e~i~~L~~~L~pf~LRR~ 386 (1033)
T PLN03142 318 -STNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGE----------NDQQEVVQQLHKVLRPFLLRRL 386 (1033)
T ss_pred -hcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccc----------cchHHHHHHHHHHhhHHHhhhh
Confidence 89999999999999999999999999999999999999999976321 1223457889999999999999
Q ss_pred HHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHH
Q psy7773 773 KKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYC 852 (1281)
Q Consensus 773 k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~ 852 (1281)
|.+|...||++.+.+++|+||+.|+.+|..+.......... ......+++.+++||+||+||+++...+..
T Consensus 387 KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~-------g~~~~~LlnilmqLRk~cnHP~L~~~~ep~-- 457 (1033)
T PLN03142 387 KSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNA-------GGERKRLLNIAMQLRKCCNHPYLFQGAEPG-- 457 (1033)
T ss_pred HHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHHhCCHHhhhccccc--
Confidence 99999999999999999999999999999987765443322 123456889999999999999998654321
Q ss_pred hhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHH
Q psy7773 853 QHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLR 932 (1281)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~ 932 (1281)
.....+..++..|+|+.+|+.+|+.+...|+||||||||+.++++|+++|..+|++|++|+|+++..+|+.+++
T Consensus 458 ------~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id 531 (1033)
T PLN03142 458 ------PPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASID 531 (1033)
T ss_pred ------CcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHH
Confidence 12233456778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHHHHH
Q psy7773 933 KFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARY 1012 (1281)
Q Consensus 933 ~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~~~~ 1012 (1281)
.||++++..+|||+||+|||+||||+.||+||+||+||||+.+.||+||||||||+++|+||||++.||||++|++++..
T Consensus 532 ~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~ 611 (1033)
T PLN03142 532 AFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYK 611 (1033)
T ss_pred HhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHH
Confidence 99998888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcCCCCCChhhHHHHHHHHhccCCch--hhcCCCCCHHHHHHHHhhCHHHHH
Q psy7773 1013 KLNMDEKVIQAGMFDQKSTGSERHEFLQTILHQDDEE--EEENEVPDDETVNQLIARTEDELT 1073 (1281)
Q Consensus 1013 K~~l~~~vi~~g~~~~~~~~~~~~~~l~~il~~~~~~--~~~~~~~~~~~~~~~~~~~~~e~~ 1073 (1281)
|+.++..||+.|.+.... ....+.|..++..+.+. ...+...++++|+.||+|+++...
T Consensus 612 Kl~Ld~~Vi~~g~~~~~~--~~~~~eL~~ll~~ga~~~f~~~~~~~~~~did~il~~~~~~~~ 672 (1033)
T PLN03142 612 KLALDALVIQQGRLAEQK--TVNKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEATA 672 (1033)
T ss_pred HHHHHHHHHhcCcccccc--cCCHHHHHHHHHhChHHhhhccCCCCCHHHHHHHHHhcHHHHH
Confidence 999999999998765432 22234455666554421 223445789999999999987764
No 8
>KOG0387|consensus
Probab=100.00 E-value=2.6e-92 Score=814.84 Aligned_cols=481 Identities=36% Similarity=0.633 Sum_probs=416.3
Q ss_pred ccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCC
Q psy7773 542 VNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSA 621 (1281)
Q Consensus 542 ~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~ 621 (1281)
+...|+|||.+||+||+.+|.++.||||+||||||||||+|+||+.|.......+|+|||||.+++.||..||.+|+|.+
T Consensus 202 I~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~~w~p~~ 281 (923)
T KOG0387|consen 202 IWSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQTWWPPF 281 (923)
T ss_pred HHHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHHHhCcce
Confidence 45689999999999999999999999999999999999999999999987677799999999999999999999999999
Q ss_pred cEEEEeCCHHHH-----------HHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHH
Q psy7773 622 NVVAYKGSPLAR-----------RALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLN 690 (1281)
Q Consensus 622 ~~~~~~g~~~~r-----------~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~ 690 (1281)
++.+|+|+.... ..+.........+|+||||+.+......+..+.|+|+|+||+|+|+|++++++.++.
T Consensus 282 rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~~~W~y~ILDEGH~IrNpns~islack 361 (923)
T KOG0387|consen 282 RVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLGILWDYVILDEGHRIRNPNSKISLACK 361 (923)
T ss_pred EEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccCcccccccccEEEecCcccccCCccHHHHHHH
Confidence 999999986521 111222334567899999999999999999999999999999999999999999999
Q ss_pred hhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCH--HHHHHHHHHHHHhhhHHH
Q psy7773 691 TFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNE--EETILIIRRLHKVLRPFL 768 (1281)
Q Consensus 691 ~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~--~~~~~~~~~L~~~l~~~~ 768 (1281)
.+ ++.+|++|||||+||++.|||+|+.|+.|+.+++...|.+.|.-|+...+.....+. ...+.....|+.+|.||+
T Consensus 362 ki-~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~Pyl 440 (923)
T KOG0387|consen 362 KI-RTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYL 440 (923)
T ss_pred hc-cccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHH
Confidence 97 999999999999999999999999999999999999999999999876654433322 234456667999999999
Q ss_pred HHHhHHHHhh-cCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhh
Q psy7773 769 LRRLKKEVES-QLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNI 847 (1281)
Q Consensus 769 lRR~k~~v~~-~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~ 847 (1281)
|||+|.+|.. .||.|.+.|++|.||+.|+.+|+.+........- ..+....+..+.-||++||||.++...
T Consensus 441 LRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i--------~ng~~~~l~Gi~iLrkICnHPdll~~~ 512 (923)
T KOG0387|consen 441 LRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKI--------LNGKRNCLSGIDILRKICNHPDLLDRR 512 (923)
T ss_pred HHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHH--------HcCCccceechHHHHhhcCCcccccCc
Confidence 9999999998 9999999999999999999999988654322100 011222445677799999999988653
Q ss_pred HHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHH-HCCCcEEEEeCCCChHH
Q psy7773 848 EEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFI-WRDFSYLRLDGTTKSED 926 (1281)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~-~~g~~~~~l~G~~~~~~ 926 (1281)
.... . ........+..|||+++|..+|..+...|+|||+|||...|+++|+.+|. ..||.|+|+||+|+...
T Consensus 513 ~~~~----~---~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~ 585 (923)
T KOG0387|consen 513 DEDE----K---QGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAAL 585 (923)
T ss_pred cccc----c---cCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccch
Confidence 2110 0 00111145778999999999999999999999999999999999999999 68999999999999999
Q ss_pred HHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHH
Q psy7773 927 RGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERI 1006 (1281)
Q Consensus 927 R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I 1006 (1281)
|+.+|++||++. .++||||+|+|||+||||++||+||+|||+|||..+.||..||+||||+++|.||||++.|||||+|
T Consensus 586 R~~lVd~Fne~~-s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEki 664 (923)
T KOG0387|consen 586 RQKLVDRFNEDE-SIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKI 664 (923)
T ss_pred hhHHHHhhcCCC-ceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHH
Confidence 999999999854 5899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCcCCCCCChhhHHHHH
Q psy7773 1007 LAAARYKLNMDEKVIQAGMFDQKSTGSERHEFL 1039 (1281)
Q Consensus 1007 ~~~~~~K~~l~~~vi~~g~~~~~~~~~~~~~~l 1039 (1281)
|.+|.+|..|.+.++...+-.......+..+++
T Consensus 665 Y~rQI~Kq~Ltn~il~~p~q~RfF~~~dl~dLF 697 (923)
T KOG0387|consen 665 YHRQIFKQFLTNRILKNPEQRRFFKGNDLHDLF 697 (923)
T ss_pred HHHHHHHHHHHHHHhcCHHHhhhcccccHHHHh
Confidence 999999999999999876555555555544433
No 9
>KOG0392|consensus
Probab=100.00 E-value=9.7e-85 Score=775.63 Aligned_cols=477 Identities=36% Similarity=0.663 Sum_probs=416.2
Q ss_pred ccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC------CCCCEEEEeCCccHHHHHHHHH
Q psy7773 542 VNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKK------NLGPYLVIVPLSTLSNWVLEFE 615 (1281)
Q Consensus 542 ~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~------~~~~~LIV~P~s~l~~W~~E~~ 615 (1281)
+..+||.||++||+|+.+++.-+++|||||+||||||+|++++++.-..... ..-|.|||||.++...|+.|+.
T Consensus 972 I~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW~~E~~ 1051 (1549)
T KOG0392|consen 972 ISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHWKSEVK 1051 (1549)
T ss_pred hhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHHHHHHH
Confidence 4679999999999999999999999999999999999999999987554431 3458999999999999999999
Q ss_pred HHCCCCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhcc
Q psy7773 616 KWAPSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNS 695 (1281)
Q Consensus 616 ~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~ 695 (1281)
+|+|-++++.|.|.+..|..++... .+.+|+||+|+.++++..++.++.|+|+|+||+|-|||..++++++++.+ .+
T Consensus 1052 kf~pfL~v~~yvg~p~~r~~lR~q~--~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL-~a 1128 (1549)
T KOG0392|consen 1052 KFFPFLKVLQYVGPPAERRELRDQY--KNANIIVTSYDVVRNDVDYLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQL-RA 1128 (1549)
T ss_pred HhcchhhhhhhcCChHHHHHHHhhc--cccceEEeeHHHHHHHHHHHHhcccceEEecCcceecchHHHHHHHHHHH-hh
Confidence 9999999999999999998877654 45799999999999999999999999999999999999999999999997 99
Q ss_pred CcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCccc--ccCCHHHHHHHHHHHHHhhhHHHHHHhH
Q psy7773 696 SHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEK--VELNEEETILIIRRLHKVLRPFLLRRLK 773 (1281)
Q Consensus 696 ~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~--~~~~~~~~~~~~~~L~~~l~~~~lRR~k 773 (1281)
.||++|||||+|||+.|||+|++||+|+.+++...|...|.+|+...... .....+.+...+..||+.+=|||+||+|
T Consensus 1129 ~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlK 1208 (1549)
T KOG0392|consen 1129 NHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLK 1208 (1549)
T ss_pred cceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999765432 3345667788999999999999999999
Q ss_pred HHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCC--chHHHHHHHHHHHHhcCCccchhhh----
Q psy7773 774 KEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEG--GARALKNTIVQLRKLCNHPFMFQNI---- 847 (1281)
Q Consensus 774 ~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~Lrk~~~hp~l~~~~---- 847 (1281)
.+|.++||||...-++|+|++.|+++|+.+..+..........+..... ...++++.+..||+.||||.+....
T Consensus 1209 edVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~ 1288 (1549)
T KOG0392|consen 1209 EDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPD 1288 (1549)
T ss_pred HHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcch
Confidence 9999999999999999999999999999998773332222111111111 2678999999999999999886542
Q ss_pred HHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhh--------------cCCeEEEEechHHHHHHHHHHHHHC--
Q psy7773 848 EEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKE--------------TKHRVLMFCQMTQLMTILEDYFIWR-- 911 (1281)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~--------------~~~kvLIFsq~~~~ld~L~~~L~~~-- 911 (1281)
-.....+++. ....-..+..|+|+.+|.++|..+-- .+||+|||||+..|+|++++-|-..
T Consensus 1289 la~i~~~l~~---~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~m 1365 (1549)
T KOG0392|consen 1289 LAAIVSHLAH---FNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYM 1365 (1549)
T ss_pred HHHHHHHHHH---hhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhc
Confidence 1111222211 11222336789999999999988741 4799999999999999999988665
Q ss_pred -CCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCc
Q psy7773 912 -DFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNE 990 (1281)
Q Consensus 912 -g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~ 990 (1281)
.+.|+|+||++++.+|++++.+||+ +..+.|+|++|.+||+||||++|||||+++-+|||.++.||++|||||||++.
T Consensus 1366 psVtymRLDGSVpp~~R~kiV~~FN~-DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrv 1444 (1549)
T KOG0392|consen 1366 PSVTYMRLDGSVPPGDRQKIVERFNE-DPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRV 1444 (1549)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhcC-CCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCcee
Confidence 5779999999999999999999998 45688999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCc
Q psy7773 991 VRVLRLITVNSVEERILAAARYKLNMDEKVIQAGM 1025 (1281)
Q Consensus 991 V~V~rli~~~tiEe~I~~~~~~K~~l~~~vi~~g~ 1025 (1281)
|.||||||+||+||+|+..|+.|+++++.||.+..
T Consensus 1445 VNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqN 1479 (1549)
T KOG0392|consen 1445 VNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQN 1479 (1549)
T ss_pred eeeeeehhcccHHHHHhhHHHHhhHHHHHHHhccc
Confidence 99999999999999999999999999999998743
No 10
>KOG0390|consensus
Probab=100.00 E-value=2.1e-71 Score=664.35 Aligned_cols=478 Identities=32% Similarity=0.494 Sum_probs=392.2
Q ss_pred cccCcccHHHHHHHHHHHHhhc------CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCC----CCEEEEeCCccHHHH
Q psy7773 541 MVNGKLKEYQIKGLEWMVSLYN------NNLNGILADEMGLGKTVQTIALLTYLMEKKKNL----GPYLVIVPLSTLSNW 610 (1281)
Q Consensus 541 ~~~~~L~~yQ~~gv~~l~~~~~------~~~~gILademGlGKTi~ai~ll~~l~~~~~~~----~~~LIV~P~s~l~~W 610 (1281)
.+...|||||.+|+.||+.... +..|||+||+||+|||+|+|+||..++...+.+ ...|||||.+++.||
T Consensus 234 ~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~nW 313 (776)
T KOG0390|consen 234 LLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVNNW 313 (776)
T ss_pred cHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHHHH
Confidence 3466899999999999998653 456789999999999999999999999776663 356999999999999
Q ss_pred HHHHHHHCC--CCcEEEEeCCHHHH-----HHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccch
Q psy7773 611 VLEFEKWAP--SANVVAYKGSPLAR-----RALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHC 683 (1281)
Q Consensus 611 ~~E~~~~~p--~~~~~~~~g~~~~r-----~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s 683 (1281)
..||.+|.. .+....+.|..... ..+......-..-|+|.+|+++..+...+....+++||+||||++||..+
T Consensus 314 kkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~~s 393 (776)
T KOG0390|consen 314 KKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNSDS 393 (776)
T ss_pred HHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccchhh
Confidence 999999986 45555566655430 01111122344568999999999988888899999999999999999999
Q ss_pred HHHHHHHhhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHH-HHHHHHHHH
Q psy7773 684 KLTQTLNTFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEET-ILIIRRLHK 762 (1281)
Q Consensus 684 ~~~~~l~~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~-~~~~~~L~~ 762 (1281)
.++++|..+ .+++|++|||||+||++.|+|++|+|+.|+.+++...|...|..|....+.....+++.. ..-+..|..
T Consensus 394 ~~~kaL~~l-~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~ 472 (776)
T KOG0390|consen 394 LTLKALSSL-KTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELRE 472 (776)
T ss_pred HHHHHHHhc-CCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHH
Confidence 999999987 999999999999999999999999999999999999999999988866444322211111 223778999
Q ss_pred hhhHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCcc
Q psy7773 763 VLRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPF 842 (1281)
Q Consensus 763 ~l~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~ 842 (1281)
+...|++||+-..+.+.||++.+++|.|.+++.|..+|..+.... ... . ..+ ..+..+..|+++||||.
T Consensus 473 ~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~~-~----~~~-----~~l~~~~~L~k~cnhP~ 541 (776)
T KOG0390|consen 473 LTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KMR-T----LKG-----YALELITKLKKLCNHPS 541 (776)
T ss_pred HHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hhh-h----hhc-----chhhHHHHHHHHhcCHH
Confidence 999999999999999999999999999999999999999987642 100 0 000 14567788999999999
Q ss_pred chhhhHHH-----H-Hhh-hcCCCccccCCccccccchHHHHHHHhhhhhh-cCCeEEEEechHHHHHHHHHHHHHCCCc
Q psy7773 843 MFQNIEEK-----Y-CQH-IGQNNTVVSGPDIYRTSGKFELLDRILPKFKE-TKHRVLMFCQMTQLMTILEDYFIWRDFS 914 (1281)
Q Consensus 843 l~~~~~~~-----~-~~~-~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~-~~~kvLIFsq~~~~ld~L~~~L~~~g~~ 914 (1281)
|....+.. + ... ................|+|+..|..+|...++ ...++++.++++.++++++..+.++|+.
T Consensus 542 L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~ 621 (776)
T KOG0390|consen 542 LLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYE 621 (776)
T ss_pred hhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCce
Confidence 87511100 0 000 00000011112223358999999999865544 4567888889999999999999999999
Q ss_pred EEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEE
Q psy7773 915 YLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 994 (1281)
Q Consensus 915 ~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~ 994 (1281)
+++|||+|+..+|+.+++.||++.+..+|||+||.|||+||||.+|++||+||++|||+.+.||++||||.||+++|+||
T Consensus 622 ~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 622 VLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred EEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCC
Q psy7773 995 RLITVNSVEERILAAARYKLNMDEKVIQAGMFDQKS 1030 (1281)
Q Consensus 995 rli~~~tiEe~I~~~~~~K~~l~~~vi~~g~~~~~~ 1030 (1281)
||++.||+||+||+|+..|..+...|++........
T Consensus 702 rLlatGtiEEk~~qrq~~K~~lS~~v~~~~~~~~~~ 737 (776)
T KOG0390|consen 702 RLLATGTIEEKIYQRQTHKEGLSSMVFDEEEDVEKH 737 (776)
T ss_pred EeecCCCchHHHHHHHHHhhhhhheEEecccccccc
Confidence 999999999999999999999999999875554443
No 11
>KOG1015|consensus
Probab=100.00 E-value=1.4e-71 Score=643.66 Aligned_cols=522 Identities=29% Similarity=0.466 Sum_probs=411.8
Q ss_pred CcccHHHHHHHHHHHHhh---------cCCCCeEEecCCCCCHHHHHHHHHHHHHHh-cCCCCCEEEEeCCccHHHHHHH
Q psy7773 544 GKLKEYQIKGLEWMVSLY---------NNNLNGILADEMGLGKTVQTIALLTYLMEK-KKNLGPYLVIVPLSTLSNWVLE 613 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~---------~~~~~gILademGlGKTi~ai~ll~~l~~~-~~~~~~~LIV~P~s~l~~W~~E 613 (1281)
..|+|||..||+||+... ..|.|||||+.||||||+|+|+|+..++.. .-...++|||||.+++.||.+|
T Consensus 667 ~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~E 746 (1567)
T KOG1015|consen 667 IKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMNE 746 (1567)
T ss_pred hhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHHHHH
Confidence 489999999999999743 357789999999999999999999887643 3456789999999999999999
Q ss_pred HHHHCCCCc----EEEEe----CCHHHHH-HHHhhhccCCccEEEechHHHhhc---------------ccccccCceeE
Q psy7773 614 FEKWAPSAN----VVAYK----GSPLARR-ALQGRMKNSKFNVLLTTYEFIIKD---------------KSVLSKIQWKC 669 (1281)
Q Consensus 614 ~~~~~p~~~----~~~~~----g~~~~r~-~~~~~~~~~~~~vvItTye~l~~~---------------~~~l~~~~w~~ 669 (1281)
|.+|.+++. +-+|. ..+..|. .+..+ .....|+|.-|++++.. ...|-.-.+|+
T Consensus 747 FekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W--~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~ 824 (1567)
T KOG1015|consen 747 FEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRW--QEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDF 824 (1567)
T ss_pred HHHhcccccccccceeehhhhccChHHHHHHHHHH--HhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCe
Confidence 999998632 22222 1222222 22222 34448999999998643 12333448999
Q ss_pred EEEeCCccccccchHHHHHHHhhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCC
Q psy7773 670 MIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELN 749 (1281)
Q Consensus 670 vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~ 749 (1281)
|||||||-|||..+.+++++..+ .+.+||+|||||+|||+.|++++++|+.|+++++..+|.+.|..|+.+ |++...+
T Consensus 825 vVCDE~HiLKNeksa~Skam~~i-rtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~n-Gq~~dST 902 (1567)
T KOG1015|consen 825 VVCDEGHILKNEKSAVSKAMNSI-RTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQN-GQCADST 902 (1567)
T ss_pred EEecchhhhccchHHHHHHHHHH-HhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCcccc-CccCCCc
Confidence 99999999999999999999997 999999999999999999999999999999999999999999999865 4555555
Q ss_pred HHHHHHHHHH---HHHhhhHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHH
Q psy7773 750 EEETILIIRR---LHKVLRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARA 826 (1281)
Q Consensus 750 ~~~~~~~~~~---L~~~l~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~ 826 (1281)
..+...+.+| |+.+|..|+-|+-...+.+.|||+++++|.+.||+.|..||+.++...... .+.. ..+.+....
T Consensus 903 ~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~~~~-G~d~--eg~~g~~ar 979 (1567)
T KOG1015|consen 903 MVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDHLTGV-GNDS--EGGRGAGAR 979 (1567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHhhcccc-CCcc--ccccchhhh
Confidence 5554444443 899999999999999999999999999999999999999999988732211 1111 122234567
Q ss_pred HHHHHHHHHHhcCCccchhhhHHH--------------HH-hhh---------------------c----------CCC-
Q psy7773 827 LKNTIVQLRKLCNHPFMFQNIEEK--------------YC-QHI---------------------G----------QNN- 859 (1281)
Q Consensus 827 ~~~~l~~Lrk~~~hp~l~~~~~~~--------------~~-~~~---------------------~----------~~~- 859 (1281)
++..+..|++|.+||+.++-.... +. +.. . ...
T Consensus 980 lf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Desss~~~~~g~ 1059 (1567)
T KOG1015|consen 980 LFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESSSGSGSDGD 1059 (1567)
T ss_pred HHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhcccccccccccccccccccCCc
Confidence 888999999999999876321110 00 000 0 000
Q ss_pred ----------------c--------c-------------cc-----------------CCccccccchHHHHHHHhhhhh
Q psy7773 860 ----------------T--------V-------------VS-----------------GPDIYRTSGKFELLDRILPKFK 885 (1281)
Q Consensus 860 ----------------~--------~-------------~~-----------------~~~~~~~s~K~~~L~~lL~~~~ 885 (1281)
+ . .. .......||||.+|.+||..+.
T Consensus 1060 ~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mce 1139 (1567)
T KOG1015|consen 1060 VEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMCE 1139 (1567)
T ss_pred hhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHHH
Confidence 0 0 00 0012335999999999999999
Q ss_pred hcCCeEEEEechHHHHHHHHHHHHH----------------------CCCcEEEEeCCCChHHHHHHHHhhcCCC-CCeE
Q psy7773 886 ETKHRVLMFCQMTQLMTILEDYFIW----------------------RDFSYLRLDGTTKSEDRGELLRKFNEPE-SKYF 942 (1281)
Q Consensus 886 ~~~~kvLIFsq~~~~ld~L~~~L~~----------------------~g~~~~~l~G~~~~~~R~~~i~~Fn~~~-~~~~ 942 (1281)
+-|+|+|||||+..+|++|+.||.. .|..|.||||++...+|+++...||++. -..+
T Consensus 1140 eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaR 1219 (1567)
T KOG1015|consen 1140 EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRAR 1219 (1567)
T ss_pred HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeE
Confidence 9999999999999999999999954 2668999999999999999999999874 4678
Q ss_pred EEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHh
Q psy7773 943 IFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDEKVIQ 1022 (1281)
Q Consensus 943 v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~~~~K~~l~~~vi~ 1022 (1281)
+|||||+|||+||||.+||+|||||..|||..+.|+|-|++|+||+++|+||||++.||+|++||.|+..|..+...|++
T Consensus 1220 l~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqsls~RVVD 1299 (1567)
T KOG1015|consen 1220 LFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQSLSFRVVD 1299 (1567)
T ss_pred EEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCcCCCCCChhhHHHHHHHHhccCC--chh----hcCCCCCHHHHHHHHhhCHHHHHHHH
Q psy7773 1023 AGMFDQKSTGSERHEFLQTILHQDD--EEE----EENEVPDDETVNQLIARTEDELTLFQ 1076 (1281)
Q Consensus 1023 ~g~~~~~~~~~~~~~~l~~il~~~~--~~~----~~~~~~~~~~~~~~~~~~~~e~~~~~ 1076 (1281)
........+.++ |..|+.+.+ ++. +....|-|-.+.+++...++-+--+.
T Consensus 1300 eqQv~Rhy~~ne----LteLy~fep~~ddp~sEr~~~~lpKdrllae~l~~~q~~i~~y~ 1355 (1567)
T KOG1015|consen 1300 EQQVERHYTMNE----LTELYTFEPDLDDPNSERDTPMLPKDRLLAELLQIHQEHIVGYH 1355 (1567)
T ss_pred HHHHHHHhhHhh----hHHHhhcCCccCCcccccccccCCchhHHHHHHHHHHHHhhhhh
Confidence 766666666555 344445543 111 22344667777777776665544443
No 12
>KOG1002|consensus
Probab=100.00 E-value=6.2e-68 Score=579.47 Aligned_cols=474 Identities=31% Similarity=0.480 Sum_probs=386.1
Q ss_pred ccccCcccccCcccHHHHHHHHHHHHhhc-CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHH
Q psy7773 534 VTEQASIMVNGKLKEYQIKGLEWMVSLYN-NNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVL 612 (1281)
Q Consensus 534 ~~~~p~~~~~~~L~~yQ~~gv~~l~~~~~-~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~ 612 (1281)
-.+||..++ ..|.|||++|+.|+..... ...|||||||||.|||||+|+++.. .....|+|||||...+.||.+
T Consensus 174 ~aeqP~dli-i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla----e~~ra~tLVvaP~VAlmQW~n 248 (791)
T KOG1002|consen 174 RAEQPDDLI-IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA----EVDRAPTLVVAPTVALMQWKN 248 (791)
T ss_pred cccCcccce-ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh----ccccCCeeEEccHHHHHHHHH
Confidence 345666543 4799999999999998776 5668999999999999999999866 234468999999999999999
Q ss_pred HHHHHC-CCCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhh-----------------cccccccCceeEEEEeC
Q psy7773 613 EFEKWA-PSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIK-----------------DKSVLSKIQWKCMIIDE 674 (1281)
Q Consensus 613 E~~~~~-p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~-----------------~~~~l~~~~w~~vIvDE 674 (1281)
|+.++. +.+++.+|+|....... .....|+||+|||..+-+ ..+.|..+.|..||+||
T Consensus 249 EI~~~T~gslkv~~YhG~~R~~ni----kel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDE 324 (791)
T KOG1002|consen 249 EIERHTSGSLKVYIYHGAKRDKNI----KELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDE 324 (791)
T ss_pred HHHHhccCceEEEEEecccccCCH----HHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhh
Confidence 999998 46789999997654322 224679999999988742 25678888999999999
Q ss_pred CccccccchHHHHHHHhhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChh---------H--H------------
Q psy7773 675 GHRMKNHHCKLTQTLNTFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCS---------T--F------------ 731 (1281)
Q Consensus 675 aHr~kn~~s~~~~~l~~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~---------~--f------------ 731 (1281)
||.+|+..|...+++..+ .+.+||+|||||+||.+.|||+|+.||....|.-+- . |
T Consensus 325 AH~IK~R~snTArAV~~L-~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h~ 403 (791)
T KOG1002|consen 325 AHNIKDRQSNTARAVFAL-ETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSHN 403 (791)
T ss_pred hcccccccccHHHHHHhh-HhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcccch
Confidence 999999999999999887 999999999999999999999999999887763210 0 1
Q ss_pred ----HHHhc----ccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHHhh--cCCCceEEEEEcCCCHHHHHHHH
Q psy7773 732 ----EQWFN----APFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVES--QLPEKVEYIIKCDMSGLQKLLYQ 801 (1281)
Q Consensus 732 ----~~~f~----~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~--~lP~k~~~~v~~~ls~~q~~lY~ 801 (1281)
..||+ .|+...| ........+...|.++..+|+||+|-.-.. .|||.+..+-.=-++..+..+|+
T Consensus 404 ~m~h~~~~n~~mlk~IqkfG-----~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~Ye 478 (791)
T KOG1002|consen 404 IMQHTCFFNHFMLKPIQKFG-----VEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYE 478 (791)
T ss_pred hhhhhhhhcccccccchhhc-----ccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHH
Confidence 11222 1222211 122233456688999999999999976433 69999999888889999999999
Q ss_pred HHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhh----------------------HH--------HH
Q psy7773 802 HLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNI----------------------EE--------KY 851 (1281)
Q Consensus 802 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~----------------------~~--------~~ 851 (1281)
.+........+.....+..-.++.+++..+.+||+++.||+|.... ++ .+
T Consensus 479 SLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~F 558 (791)
T KOG1002|consen 479 SLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCHHKF 558 (791)
T ss_pred HHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhhHHH
Confidence 9977666555555555555677889999999999999999886221 00 11
Q ss_pred Hhh--------hcCCCccc---------------------------------cCCccccccchHHHHHHHhhhhhhcC--
Q psy7773 852 CQH--------IGQNNTVV---------------------------------SGPDIYRTSGKFELLDRILPKFKETK-- 888 (1281)
Q Consensus 852 ~~~--------~~~~~~~~---------------------------------~~~~~~~~s~K~~~L~~lL~~~~~~~-- 888 (1281)
|.. +....++. ..-+.|..|.|+++|.+-|..+.+..
T Consensus 559 CrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t 638 (791)
T KOG1002|consen 559 CRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDRT 638 (791)
T ss_pred HHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHcccc
Confidence 111 11111000 01134778999999999998887644
Q ss_pred CeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCC
Q psy7773 889 HRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDS 968 (1281)
Q Consensus 889 ~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~ 968 (1281)
-|.||||||+.+||++.-.|...|+.++.|.|+|+...|..+|+.|.+ +.+|.|||+|..|||..|||+.|..|.++||
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~n-d~~c~vfLvSLkAGGVALNLteASqVFmmDP 717 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKN-DIDCRVFLVSLKAGGVALNLTEASQVFMMDP 717 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhcc-CCCeEEEEEEeccCceEeeechhceeEeecc
Confidence 478999999999999999999999999999999999999999999987 6789999999999999999999999999999
Q ss_pred CCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy7773 969 DWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDEKVIQA 1023 (1281)
Q Consensus 969 ~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~~~~K~~l~~~vi~~ 1023 (1281)
+|||+...||++|+|||||.++|+|.||+..+|||++|+..+.+|.++++..|+.
T Consensus 718 WWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~q 772 (791)
T KOG1002|consen 718 WWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQ 772 (791)
T ss_pred cccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCC
Confidence 9999999999999999999999999999999999999999999999999999864
No 13
>KOG4439|consensus
Probab=100.00 E-value=4.3e-65 Score=580.01 Aligned_cols=473 Identities=26% Similarity=0.417 Sum_probs=385.6
Q ss_pred cccccCcccccCcccHHHHHHHHHHHHhhc-CCCCeEEecCCCCCHHHHHHHHHHHHHHhc-------CCCCCEEEEeCC
Q psy7773 533 KVTEQASIMVNGKLKEYQIKGLEWMVSLYN-NNLNGILADEMGLGKTVQTIALLTYLMEKK-------KNLGPYLVIVPL 604 (1281)
Q Consensus 533 ~~~~~p~~~~~~~L~~yQ~~gv~~l~~~~~-~~~~gILademGlGKTi~ai~ll~~l~~~~-------~~~~~~LIV~P~ 604 (1281)
.....++......|+|||+.|+.||..... .+.||||||+||+|||+++|++|.+-.... ....++|||||.
T Consensus 313 t~lte~P~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa 392 (901)
T KOG4439|consen 313 TDLTETPDGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA 392 (901)
T ss_pred ccccCCCCcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH
Confidence 333444555677999999999999987664 466899999999999999999998754321 122369999999
Q ss_pred ccHHHHHHHHHHHCC--CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhh----------cccccccCceeEEEE
Q psy7773 605 STLSNWVLEFEKWAP--SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIK----------DKSVLSKIQWKCMII 672 (1281)
Q Consensus 605 s~l~~W~~E~~~~~p--~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~----------~~~~l~~~~w~~vIv 672 (1281)
|++.||..|+.+-.. -+.|++|+|... |. + ......+||||||||..+.. ..+.|..+.|..||+
T Consensus 393 Sli~qW~~Ev~~rl~~n~LsV~~~HG~n~-r~-i-~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVIL 469 (901)
T KOG4439|consen 393 SLIHQWEAEVARRLEQNALSVYLYHGPNK-RE-I-SAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVIL 469 (901)
T ss_pred HHHHHHHHHHHHHHhhcceEEEEecCCcc-cc-C-CHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhh
Confidence 999999999987663 477899999864 21 1 11234689999999998876 356788889999999
Q ss_pred eCCccccccchHHHHHHHhhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHH
Q psy7773 673 DEGHRMKNHHCKLTQTLNTFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEE 752 (1281)
Q Consensus 673 DEaHr~kn~~s~~~~~l~~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~ 752 (1281)
||||.++|..++-+.++..+ .+..||+|||||+||++.|+|+|+.||....|++...|.+++..+-..
T Consensus 470 DEAH~IrN~~tq~S~AVC~L-~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~----------- 537 (901)
T KOG4439|consen 470 DEAHNIRNSNTQCSKAVCKL-SAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKG----------- 537 (901)
T ss_pred hhhhhhcccchhHHHHHHHH-hhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCcccc-----------
Confidence 99999999999999999987 899999999999999999999999999999999999999988754322
Q ss_pred HHHHHHHHHHhhhHHHHHHhHHHHhh-----cCCCceEEEEEcCCCHHHHHHHHHHHhcccccccC------------C-
Q psy7773 753 TILIIRRLHKVLRPFLLRRLKKEVES-----QLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDG------------S- 814 (1281)
Q Consensus 753 ~~~~~~~L~~~l~~~~lRR~k~~v~~-----~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~------------~- 814 (1281)
..++|.-+..+.||||||..... .||.+...++.+.|+..+...|+-+......+... .
T Consensus 538 ---g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~ 614 (901)
T KOG4439|consen 538 ---GANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGY 614 (901)
T ss_pred ---chhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccccCc
Confidence 24577788899999999998876 79999999999999999999998775433222100 0
Q ss_pred -----------------------ccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhh-hc--------------
Q psy7773 815 -----------------------EKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQH-IG-------------- 856 (1281)
Q Consensus 815 -----------------------~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~-~~-------------- 856 (1281)
............++..|++||++|+||-+.....+...-. .+
T Consensus 615 ~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e~~~l 694 (901)
T KOG4439|consen 615 QSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLEEDNL 694 (901)
T ss_pred cccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhhhhhHH
Confidence 0001111223457888999999999995543221110000 00
Q ss_pred -------CCCcc------------ccCCccccccchHHHHHHHhhhh-hhcCCeEEEEechHHHHHHHHHHHHHCCCcEE
Q psy7773 857 -------QNNTV------------VSGPDIYRTSGKFELLDRILPKF-KETKHRVLMFCQMTQLMTILEDYFIWRDFSYL 916 (1281)
Q Consensus 857 -------~~~~~------------~~~~~~~~~s~K~~~L~~lL~~~-~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~ 916 (1281)
..... .......+.|.|+..+..+|..+ ...+.|++|.||++.+|.++...|...|+.|.
T Consensus 695 ~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~ 774 (901)
T KOG4439|consen 695 AELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYT 774 (901)
T ss_pred HhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeee
Confidence 00000 00113356799999999999887 56789999999999999999999999999999
Q ss_pred EEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEE
Q psy7773 917 RLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRL 996 (1281)
Q Consensus 917 ~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rl 996 (1281)
.++|.....+|+.+++.||..+.+.+|+|+|-.|||.||||.+||++|++|+.|||+...||.+|++|+||+|+|+||||
T Consensus 775 si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~ 854 (901)
T KOG4439|consen 775 SITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRL 854 (901)
T ss_pred eecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEE
Confidence 99999999999999999999888899999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy7773 997 ITVNSVEERILAAARYKLNMDEKVIQA 1023 (1281)
Q Consensus 997 i~~~tiEe~I~~~~~~K~~l~~~vi~~ 1023 (1281)
++.||||++|...+..|+.++..|+.+
T Consensus 855 ~~~gTvEqrV~~LQdkKldlA~~VL~G 881 (901)
T KOG4439|consen 855 MCKGTVEQRVKSLQDKKLDLAKGVLTG 881 (901)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccC
Confidence 999999999999999999999999974
No 14
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=4.5e-62 Score=645.33 Aligned_cols=480 Identities=42% Similarity=0.701 Sum_probs=409.9
Q ss_pred ccccCcccHHHHHHHHHHH-HhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCC-CCCEEEEeCCccHHHHHHHHHHH
Q psy7773 540 IMVNGKLKEYQIKGLEWMV-SLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKN-LGPYLVIVPLSTLSNWVLEFEKW 617 (1281)
Q Consensus 540 ~~~~~~L~~yQ~~gv~~l~-~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~-~~~~LIV~P~s~l~~W~~E~~~~ 617 (1281)
..+.+.|+|||..|++|+. .++..+.+|||||+||+|||+|+|+++.++...... .+|+|||||.+++.||.+|+.+|
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~ 412 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKF 412 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhh
Confidence 4566899999999999999 899999999999999999999999999986655554 58999999999999999999999
Q ss_pred CCCCc-EEEEeCCHHH----HHHHHhhhcc---CCccEEEechHHHhh---cccccccCceeEEEEeCCccccccchHHH
Q psy7773 618 APSAN-VVAYKGSPLA----RRALQGRMKN---SKFNVLLTTYEFIIK---DKSVLSKIQWKCMIIDEGHRMKNHHCKLT 686 (1281)
Q Consensus 618 ~p~~~-~~~~~g~~~~----r~~~~~~~~~---~~~~vvItTye~l~~---~~~~l~~~~w~~vIvDEaHr~kn~~s~~~ 686 (1281)
.|.++ +..++|.... +..+...... ..+++++|||+.+.. +...+..+.|+++|+||||++||..+..+
T Consensus 413 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~ 492 (866)
T COG0553 413 APDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSEG 492 (866)
T ss_pred CccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhHHH
Confidence 99999 9999998752 3333333222 238999999999999 99999999999999999999999999999
Q ss_pred HHHHhhhccCcEEEeecCCCCCChhHHHHHHh-hhcCCCCC-ChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhh
Q psy7773 687 QTLNTFYNSSHRVLLTGTPLQNKLPELWALLN-FLLPSIFK-SCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVL 764 (1281)
Q Consensus 687 ~~l~~~~~~~~rllLTgTPl~n~~~el~~ll~-fl~p~~~~-~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l 764 (1281)
+++. .+++.++++|||||++|++.|||++++ |+.|..++ +...|..||..|......... .......+..|+.++
T Consensus 493 ~~l~-~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~i 569 (866)
T COG0553 493 KALQ-FLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGP--LEARELGIELLRKLL 569 (866)
T ss_pred HHHH-HHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccc--hhhHHHHHHHHHHHH
Confidence 9999 459999999999999999999999999 99999999 569999999998865543222 233334566699999
Q ss_pred hHHHHHHhHHH--HhhcCCCceEEEEEcCCCHHHHHHHHHHHh---cccccccCCccCCCC--CC--chHHHHHHHHHHH
Q psy7773 765 RPFLLRRLKKE--VESQLPEKVEYIIKCDMSGLQKLLYQHLHN---RGILLTDGSEKGKTG--EG--GARALKNTIVQLR 835 (1281)
Q Consensus 765 ~~~~lRR~k~~--v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~---~~~~~~~~~~~~~~~--~~--~~~~~~~~l~~Lr 835 (1281)
+||++||++.+ +...||++.+.++.|.|+..|..+|..+.. ............... .. ....+++.++.||
T Consensus 570 ~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr 649 (866)
T COG0553 570 SPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLR 649 (866)
T ss_pred HHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHH
Confidence 99999999999 889999999999999999999999999877 333222221111000 00 3567889999999
Q ss_pred HhcCCccchhhh-HHHHHhhh---cC-CCccccCCcccccc-chHHHHHHHh-hhhhhcCC--eEEEEechHHHHHHHHH
Q psy7773 836 KLCNHPFMFQNI-EEKYCQHI---GQ-NNTVVSGPDIYRTS-GKFELLDRIL-PKFKETKH--RVLMFCQMTQLMTILED 906 (1281)
Q Consensus 836 k~~~hp~l~~~~-~~~~~~~~---~~-~~~~~~~~~~~~~s-~K~~~L~~lL-~~~~~~~~--kvLIFsq~~~~ld~L~~ 906 (1281)
++|+||.++... ........ .. .........++..| +|+..+.++| ..+...++ |||||+||+.++++|+.
T Consensus 650 ~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~ 729 (866)
T COG0553 650 QICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLED 729 (866)
T ss_pred HhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHH
Confidence 999999988754 22111100 00 01112233456778 9999999999 89999999 99999999999999999
Q ss_pred HHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhC
Q psy7773 907 YFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIG 986 (1281)
Q Consensus 907 ~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiG 986 (1281)
+|...++.|++++|+++...|+.+++.|+++ ..++|||+|++|||.||||+.|++||+||++|||..+.||++|+||||
T Consensus 730 ~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~-~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~Rig 808 (866)
T COG0553 730 YLKALGIKYVRLDGSTPAKRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIG 808 (866)
T ss_pred HHHhcCCcEEEEeCCCChhhHHHHHHHhhcC-CCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999996 668899999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy7773 987 QKNEVRVLRLITVNSVEERILAAARYKLNMDEKVIQA 1023 (1281)
Q Consensus 987 Q~k~V~V~rli~~~tiEe~I~~~~~~K~~l~~~vi~~ 1023 (1281)
|+++|.||+|++.||+||+|+.++..|+.+...++++
T Consensus 809 Q~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~ 845 (866)
T COG0553 809 QKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDA 845 (866)
T ss_pred CcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999986
No 15
>KOG1016|consensus
Probab=100.00 E-value=1.6e-60 Score=541.79 Aligned_cols=507 Identities=31% Similarity=0.467 Sum_probs=389.0
Q ss_pred cccccccccccccccccCcccccCcccHHHHHHHHHHHHh-------h--cCCCCeEEecCCCCCHHHHHHHHHHHHHHh
Q psy7773 521 ATYYSIAHTYHEKVTEQASIMVNGKLKEYQIKGLEWMVSL-------Y--NNNLNGILADEMGLGKTVQTIALLTYLMEK 591 (1281)
Q Consensus 521 ~~~~~~~~~~~~~~~~~p~~~~~~~L~~yQ~~gv~~l~~~-------~--~~~~~gILademGlGKTi~ai~ll~~l~~~ 591 (1281)
.-+.++.|+-.+.-....+. +...++|||+-||+||+.. | ..|.|||||+.||||||+|+|+|+--++ +
T Consensus 231 rv~VN~~HPeeee~iflapq-la~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~difl-R 308 (1387)
T KOG1016|consen 231 RVLVNAGHPEEEEDIFLAPQ-LAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFL-R 308 (1387)
T ss_pred cEEEecCCCCCCcceeehhh-hHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHh-h
Confidence 34667777765554443333 3457999999999998752 2 3577899999999999999999998777 5
Q ss_pred cCCCCCEEEEeCCccHHHHHHHHHHHCCCC-----------cEEEEeCC-H--HHHH-HHHhhhccCCccEEEechHHHh
Q psy7773 592 KKNLGPYLVIVPLSTLSNWVLEFEKWAPSA-----------NVVAYKGS-P--LARR-ALQGRMKNSKFNVLLTTYEFII 656 (1281)
Q Consensus 592 ~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~-----------~~~~~~g~-~--~~r~-~~~~~~~~~~~~vvItTye~l~ 656 (1281)
+...+.+|+|||-.+|.||..||..|.|.. .+.++... + ..|. .+..+ -....|+++-|++++
T Consensus 309 hT~AKtVL~ivPiNTlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~W--v~~GGVlLvGYemfR 386 (1387)
T KOG1016|consen 309 HTKAKTVLVIVPINTLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQW--VQTGGVLLVGYEMFR 386 (1387)
T ss_pred cCccceEEEEEehHHHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHH--hccCCEEEehHHHHH
Confidence 667789999999999999999999999862 22332221 1 1221 12222 345679999999874
Q ss_pred hc--------------------------------------ccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcE
Q psy7773 657 KD--------------------------------------KSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHR 698 (1281)
Q Consensus 657 ~~--------------------------------------~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~r 698 (1281)
-. ...|-.-..|+|||||+|||||.++..+.+|..+ ++++|
T Consensus 387 LL~lk~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~I-rtrRR 465 (1387)
T KOG1016|consen 387 LLILKTLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAI-RTRRR 465 (1387)
T ss_pred HHHHhcccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHh-hhcee
Confidence 21 1223334789999999999999999999999987 99999
Q ss_pred EEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHH---HHHHHhhhHHHHHHhHHH
Q psy7773 699 VLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILII---RRLHKVLRPFLLRRLKKE 775 (1281)
Q Consensus 699 llLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~---~~L~~~l~~~~lRR~k~~ 775 (1281)
+.|||-|+|||+-|+|+++.|+.|..+++..+|.+.|.+|+. .|++++.+......+. +.||.+|..|+-||+...
T Consensus 466 iVLTGYPLQNNLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~-NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~Htv 544 (1387)
T KOG1016|consen 466 IVLTGYPLQNNLLEYWCMVDFVRPKYLGTRKEFINMFERPIK-NGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTV 544 (1387)
T ss_pred EEEeccccccchHHHhhhheeccccccchHHHHHHHhhcccc-CCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 999999999999999999999999999999999999999985 4667777666554433 349999999999999999
Q ss_pred HhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHH-H--
Q psy7773 776 VESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKY-C-- 852 (1281)
Q Consensus 776 v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~-~-- 852 (1281)
+...||.+.++++-+.||..|+.||+.+.......... .+..+ -+-+.++.-..++.|||.++...-... +
T Consensus 545 Lk~~LP~k~EyViLvr~s~iQR~LY~~Fm~d~~r~~~~--~~~~~----~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~ 618 (1387)
T KOG1016|consen 545 LKKILPEKKEYVILVRKSQIQRQLYRNFMLDAKREIAA--NNDAV----FNPLKAFSVCCKIWNHPDVLYRLLEKKKRAE 618 (1387)
T ss_pred HhhhcccccceEEEEeHHHHHHHHHHHHHHHHHHhhcc--ccccc----cChHHHHHHHHHhcCChHHHHHHHHHhhhhh
Confidence 99999999999999999999999999876332221110 01111 122334445567779997664332210 0
Q ss_pred ------h------------hhcCC---Cc--------------------------cccCC------------------cc
Q psy7773 853 ------Q------------HIGQN---NT--------------------------VVSGP------------------DI 867 (1281)
Q Consensus 853 ------~------------~~~~~---~~--------------------------~~~~~------------------~~ 867 (1281)
+ .+... .. ...++ .+
T Consensus 619 e~dl~vee~~~ag~~~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gv 698 (1387)
T KOG1016|consen 619 EDDLRVEEMKFAGLQQQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGV 698 (1387)
T ss_pred hhhhhHHHHhhhcccccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhccc
Confidence 0 00000 00 00000 11
Q ss_pred ccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHC------------------CCcEEEEeCCCChHHHHH
Q psy7773 868 YRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR------------------DFSYLRLDGTTKSEDRGE 929 (1281)
Q Consensus 868 ~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~------------------g~~~~~l~G~~~~~~R~~ 929 (1281)
...++|+-.+..++..--.-|.++|||||....|+.|+.+|..+ ...|++++|.++..+|.+
T Consensus 699 Len~pk~V~~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rek 778 (1387)
T KOG1016|consen 699 LENGPKIVISLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREK 778 (1387)
T ss_pred ccCCCceEEEEeeeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHH
Confidence 22345555555566555567899999999999999999999665 246899999999999999
Q ss_pred HHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHH
Q psy7773 930 LLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAA 1009 (1281)
Q Consensus 930 ~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~ 1009 (1281)
+|++||.+-+--..|||||++|..||||.+|+.+|+||..|||..+.||++|++|+||+|+|+|||||+.+|+|.+||.|
T Consensus 779 LinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydR 858 (1387)
T KOG1016|consen 779 LINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDR 858 (1387)
T ss_pred HHHhccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHH
Confidence 99999986554468999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCcCCCCCChhhHHHHH
Q psy7773 1010 ARYKLNMDEKVIQAGMFDQKSTGSERHEFL 1039 (1281)
Q Consensus 1010 ~~~K~~l~~~vi~~g~~~~~~~~~~~~~~l 1039 (1281)
+..|..+...|++.-.-+-+.+..+...++
T Consensus 859 QIsKqGmsdRvVDd~np~an~s~Ke~enLl 888 (1387)
T KOG1016|consen 859 QISKQGMSDRVVDDANPDANISQKELENLL 888 (1387)
T ss_pred HHhhccchhhhhcccCccccccHHHHHHHh
Confidence 999999999999886666666655544443
No 16
>KOG0385|consensus
Probab=100.00 E-value=2.6e-59 Score=537.80 Aligned_cols=298 Identities=52% Similarity=0.864 Sum_probs=272.1
Q ss_pred CcccCCHHHHHHHHHHhCCCCCCCHHHHHHHhcccccccCccccccHHHHHHHHHHHHHHhhhhHHhhchhhhhhcCCCc
Q psy7773 1 TPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEK 80 (1281)
Q Consensus 1 TPiqN~~~eL~sll~fL~p~~l~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~dv~~~LP~k 80 (1281)
||+|||+.|||+||+||.|++|++.+.|..||...... ...+.+.+||.+|+||+|||+|.+|...|||+
T Consensus 326 TPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~----------~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppK 395 (971)
T KOG0385|consen 326 TPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCE----------GDQELVSRLHKVLRPFLLRRIKSDVEKSLPPK 395 (971)
T ss_pred CcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccc----------cCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCc
Confidence 99999999999999999999999999999999775211 12236789999999999999999999999999
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhhhhhccccccCCCCCCchHHHHHHHHHHHHHcCCCcCchhhHHHHhhhhcCCCcccc
Q psy7773 81 VEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNNTVVS 160 (1281)
Q Consensus 81 ~~~~v~v~ls~~Q~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~~~~hP~l~~~~~~~~~~~~~~~~~~~~ 160 (1281)
.+.+++|.||+.|++.|..+............ ......+.+++++||+|||||+||...+ ...++..
T Consensus 396 kE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~-----~~~k~kL~NI~mQLRKccnHPYLF~g~e--------Pg~pytt 462 (971)
T KOG0385|consen 396 KELIIYVGMSSMQKKWYKAILMKDLDALNGEG-----KGEKTKLQNIMMQLRKCCNHPYLFDGAE--------PGPPYTT 462 (971)
T ss_pred ceeeEeccchHHHHHHHHHHHHhcchhhcccc-----cchhhHHHHHHHHHHHhcCCccccCCCC--------CCCCCCc
Confidence 99999999999999999998876554443322 1245789999999999999999997522 2255667
Q ss_pred CCcccccCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceE
Q psy7773 161 GPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFI 240 (1281)
Q Consensus 161 ~~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~v 240 (1281)
+..++..|||+.+|..+|..+.+.|++||||||++.++++|++++..+|+.|+++||+++.++|...|+.||.+++.++|
T Consensus 463 dehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~Fi 542 (971)
T KOG0385|consen 463 DEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFI 542 (971)
T ss_pred chHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEE
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred EEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhccccchhhhhc
Q psy7773 241 FLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDEKEYHR 320 (1281)
Q Consensus 241 ll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~~l~~~~~~~ 320 (1281)
||+||+|||.||||+.|++||+||.+|||..+.||++|||||||+++|.||||++.+||||+|+.++..|+.++..+++.
T Consensus 543 FlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~ 622 (971)
T KOG0385|consen 543 FLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQ 622 (971)
T ss_pred EEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred c
Q psy7773 321 N 321 (1281)
Q Consensus 321 ~ 321 (1281)
+
T Consensus 623 g 623 (971)
T KOG0385|consen 623 G 623 (971)
T ss_pred C
Confidence 7
No 17
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.6e-56 Score=562.18 Aligned_cols=433 Identities=20% Similarity=0.268 Sum_probs=329.8
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCc
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSAN 622 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~ 622 (1281)
...|.|||+.++.++...+ ..+.|||||||||||++|++++.+++. .+..+|+|||||.+++.||..|+.+|+ ++.
T Consensus 150 ~~~l~pHQl~~~~~vl~~~--~~R~LLADEvGLGKTIeAglil~~l~~-~g~~~rvLIVvP~sL~~QW~~El~~kF-~l~ 225 (956)
T PRK04914 150 RASLIPHQLYIAHEVGRRH--APRVLLADEVGLGKTIEAGMIIHQQLL-TGRAERVLILVPETLQHQWLVEMLRRF-NLR 225 (956)
T ss_pred CCCCCHHHHHHHHHHhhcc--CCCEEEEeCCcCcHHHHHHHHHHHHHH-cCCCCcEEEEcCHHHHHHHHHHHHHHh-CCC
Confidence 3469999999998876543 456799999999999999999988874 456689999999999999999998887 567
Q ss_pred EEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc---cccccCceeEEEEeCCcccccc---chHHHHHHHhhh-cc
Q psy7773 623 VVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK---SVLSKIQWKCMIIDEGHRMKNH---HCKLTQTLNTFY-NS 695 (1281)
Q Consensus 623 ~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~---~~l~~~~w~~vIvDEaHr~kn~---~s~~~~~l~~~~-~~ 695 (1281)
+.+|.+................++++||||+++.++. ..+....|++|||||||++++. .+..++.+..+. ++
T Consensus 226 ~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~ 305 (956)
T PRK04914 226 FSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVI 305 (956)
T ss_pred eEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhcc
Confidence 7777765433211111123346789999999998764 3455669999999999999953 455677776654 46
Q ss_pred CcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhc--ccccC------CcccccCCHH----------------
Q psy7773 696 SHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFN--APFAT------TGEKVELNEE---------------- 751 (1281)
Q Consensus 696 ~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~--~~~~~------~~~~~~~~~~---------------- 751 (1281)
+++|+|||||+||++.++|++|+||+|+.|+++..|..... .|++. .+.. ++..
T Consensus 306 ~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~--~~~~~~~~l~~ll~~~~~~~ 383 (956)
T PRK04914 306 PGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEK--LSDDALNALGELLGEQDIEP 383 (956)
T ss_pred CCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCc--CCHHHHHHHHHHhcccchhH
Confidence 89999999999999999999999999999999999965432 22110 0000 0000
Q ss_pred --------------HHHHHHHHHHH--hhhHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCc
Q psy7773 752 --------------ETILIIRRLHK--VLRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSE 815 (1281)
Q Consensus 752 --------------~~~~~~~~L~~--~l~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~ 815 (1281)
....++..|.. -...+|+|+++.+|. .+|.+..+.+.+++.+.-...+..
T Consensus 384 l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~y~~~~~~------------- 449 (956)
T PRK04914 384 LLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQYQTAIKV------------- 449 (956)
T ss_pred HHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHHHHHHHHH-------------
Confidence 00111111111 123567899999976 589999999999986642222211
Q ss_pred cCCCCCCchHHHHHHHHHHHHhcCCcc-chhhhHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEE
Q psy7773 816 KGKTGEGGARALKNTIVQLRKLCNHPF-MFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMF 894 (1281)
Q Consensus 816 ~~~~~~~~~~~~~~~l~~Lrk~~~hp~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIF 894 (1281)
.....++.+ .+|- ++.... .....+..++|+..|..+|.... +.|||||
T Consensus 450 -------------~~~~~~~~~-l~pe~~~~~~~--------------~~~~~~~~d~Ki~~L~~~L~~~~--~~KvLVF 499 (956)
T PRK04914 450 -------------SLEARARDM-LYPEQIYQEFE--------------DNATWWNFDPRVEWLIDFLKSHR--SEKVLVI 499 (956)
T ss_pred -------------hHHHHHHhh-cCHHHHHHHHh--------------hhhhccccCHHHHHHHHHHHhcC--CCeEEEE
Confidence 001112222 2221 111000 01123456789999999998754 7799999
Q ss_pred echHHHHHHHHHHH-HHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChh
Q psy7773 895 CQMTQLMTILEDYF-IWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPH 973 (1281)
Q Consensus 895 sq~~~~ld~L~~~L-~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~ 973 (1281)
|++..+++.|...| ...|++++.+||+++..+|.++++.|++++++++| ||||.+||+|+||+.|++||+||+||||.
T Consensus 500 ~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~V-LIsTdvgseGlNlq~a~~VInfDlP~nP~ 578 (956)
T PRK04914 500 CAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQV-LLCSEIGSEGRNFQFASHLVLFDLPFNPD 578 (956)
T ss_pred eCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccE-EEechhhccCCCcccccEEEEecCCCCHH
Confidence 99999999999999 56799999999999999999999999986545665 88999999999999999999999999999
Q ss_pred hhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCcC
Q psy7773 974 QDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDEKVIQAGMF 1026 (1281)
Q Consensus 974 ~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~~~~K~~l~~~vi~~g~~ 1026 (1281)
.|+||+||+||+||+++|.||++++.+|+++.|+.++..|+++++.++..|..
T Consensus 579 ~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~~ 631 (956)
T PRK04914 579 LLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGRA 631 (956)
T ss_pred HHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHHH
Confidence 99999999999999999999999999999999999999999999999877644
No 18
>KOG0384|consensus
Probab=100.00 E-value=9.7e-56 Score=531.73 Aligned_cols=304 Identities=47% Similarity=0.796 Sum_probs=274.0
Q ss_pred CcccCCHHHHHHHHHHhCCCCCCCHHHHHHHhcccccccCccccccHHHHHHHHHHHHHHhhhhHHhhchhhhhhcCCCc
Q psy7773 1 TPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEK 80 (1281)
Q Consensus 1 TPiqN~~~eL~sll~fL~p~~l~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~dv~~~LP~k 80 (1281)
||+||++.|||+||+||+|+-|.+...|...|.. ....-+..|+.+|.|+||||+|+||...||++
T Consensus 534 TPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~--------------~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k 599 (1373)
T KOG0384|consen 534 TPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDE--------------ETEEQVRKLQQILKPFLLRRLKKDVEKSLPPK 599 (1373)
T ss_pred CCccccHHHHHHHhcccCCCCCCcHHHHHHhhcc--------------hhHHHHHHHHHHhhHHHHHHHHhhhccCCCCC
Confidence 9999999999999999999999999999887722 12233678999999999999999999999999
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhhhhhccccccCCCCCCchHHHHHHHHHHHHHcCCCcCchhhHHHHhhhhcCCCcccc
Q psy7773 81 VEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNNTVVS 160 (1281)
Q Consensus 81 ~~~~v~v~ls~~Q~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~~~~hP~l~~~~~~~~~~~~~~~~~~~~ 160 (1281)
.++++.|+||+.|+.+|+.|+++++....... .++..+++++++.|++|||||+|+...+...............
T Consensus 600 ~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~-----~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~ 674 (1373)
T KOG0384|consen 600 EETILRVELSDLQKQYYKAILTKNFSALTKGA-----KGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEA 674 (1373)
T ss_pred cceEEEeehhHHHHHHHHHHHHhhHHHHhccC-----CCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHH
Confidence 99999999999999999999988776544322 2223689999999999999999999988877666543111112
Q ss_pred CCcccccCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceE
Q psy7773 161 GPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFI 240 (1281)
Q Consensus 161 ~~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~v 240 (1281)
.-.++..|||+.+|..||..+...|+|||||||++.++++|++||..+|++|-+|||++..+-|++.|++||.+++..+|
T Consensus 675 L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFv 754 (1373)
T KOG0384|consen 675 LQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFV 754 (1373)
T ss_pred HHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceE
Confidence 22357889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhccccchhhhhc
Q psy7773 241 FLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDEKEYHR 320 (1281)
Q Consensus 241 ll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~~l~~~~~~~ 320 (1281)
||+||+|||.||||+.|++|||||.+|||+.+.||+.|||||||++.|.|||||+++|+|+.|++++..|+.++..++++
T Consensus 755 FLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~ 834 (1373)
T KOG0384|consen 755 FLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQR 834 (1373)
T ss_pred EEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred cch
Q psy7773 321 NNT 323 (1281)
Q Consensus 321 ~~~ 323 (1281)
...
T Consensus 835 m~t 837 (1373)
T KOG0384|consen 835 MDT 837 (1373)
T ss_pred hcc
Confidence 775
No 19
>KOG1000|consensus
Probab=100.00 E-value=6.4e-54 Score=471.25 Aligned_cols=417 Identities=25% Similarity=0.364 Sum_probs=325.4
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCcE
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSANV 623 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~~ 623 (1281)
..|.|||++||.|.+. .++.+||||+||||||+|||+++.+.... +|.|||||+++...|..++.+|+|....
T Consensus 197 s~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAlaIA~yyraE----wplliVcPAsvrftWa~al~r~lps~~p 269 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALAIARYYRAE----WPLLIVCPASVRFTWAKALNRFLPSIHP 269 (689)
T ss_pred HhhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHHHHHHHhhc----CcEEEEecHHHhHHHHHHHHHhcccccc
Confidence 4699999999999886 57778999999999999999999887633 6999999999999999999999998765
Q ss_pred --EEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhh-ccCcEEE
Q psy7773 624 --VAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFY-NSSHRVL 700 (1281)
Q Consensus 624 --~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~-~~~~rll 700 (1281)
++..+.... ........|.|.||+.+......+..-.|.+||+||+|++|+..++.++++..+. ...|.||
T Consensus 270 i~vv~~~~D~~------~~~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvIL 343 (689)
T KOG1000|consen 270 IFVVDKSSDPL------PDVCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVIL 343 (689)
T ss_pred eEEEecccCCc------cccccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEE
Confidence 333332110 0011235689999999999999999989999999999999999999888877665 4678899
Q ss_pred eecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCc--ccccCCHHHHHHHHHHHHHhhh-HHHHHHhHHHHh
Q psy7773 701 LTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTG--EKVELNEEETILIIRRLHKVLR-PFLLRRLKKEVE 777 (1281)
Q Consensus 701 LTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~--~~~~~~~~~~~~~~~~L~~~l~-~~~lRR~k~~v~ 777 (1281)
|||||--..+.|||.++..+++.+|.+..+|-..|..--.... ++...+ ....|+-+|. ..|+||+|.+|.
T Consensus 344 LSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~t------nl~EL~~lL~k~lMIRRlK~dvL 417 (689)
T KOG1000|consen 344 LSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCT------NLEELAALLFKRLMIRRLKADVL 417 (689)
T ss_pred ecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCC------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999766654221110 111111 1334666554 468999999999
Q ss_pred hcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhcC
Q psy7773 778 SQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQ 857 (1281)
Q Consensus 778 ~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~ 857 (1281)
.+||+|...++.+ ....+-+.-+.+......- .. .+ .|+-.+.|--. +. .
T Consensus 418 ~qLPpKrr~Vv~~-~~gr~da~~~~lv~~a~~~-------t~--------~~-~~e~~~~~l~l--~y-------~---- 467 (689)
T KOG1000|consen 418 KQLPPKRREVVYV-SGGRIDARMDDLVKAAADY-------TK--------VN-SMERKHESLLL--FY-------S---- 467 (689)
T ss_pred hhCCccceEEEEE-cCCccchHHHHHHHHhhhc-------ch--------hh-hhhhhhHHHHH--HH-------H----
Confidence 9999995554443 3444444444433321110 00 00 01111111000 00 0
Q ss_pred CCccccCCccccccchHHHHHHHhhh----hhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHh
Q psy7773 858 NNTVVSGPDIYRTSGKFELLDRILPK----FKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRK 933 (1281)
Q Consensus 858 ~~~~~~~~~~~~~s~K~~~L~~lL~~----~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~ 933 (1281)
...-.|+..+.+.|-. ....+.|+|||+++..+||-|+.++..+++.++||||+|+...|+.+++.
T Consensus 468 ----------~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qs 537 (689)
T KOG1000|consen 468 ----------LTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQS 537 (689)
T ss_pred ----------HhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHH
Confidence 0012355555555544 34678899999999999999999999999999999999999999999999
Q ss_pred hcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHHHHHH
Q psy7773 934 FNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYK 1013 (1281)
Q Consensus 934 Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~~~~K 1013 (1281)
|+. +..+.|-++|..|||.||+|++|+.|||.+++|||...+||.+|+||+||+..|.||+||++||+|+.+|.....|
T Consensus 538 FQ~-seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~K 616 (689)
T KOG1000|consen 538 FQT-SEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQK 616 (689)
T ss_pred hcc-ccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHH
Confidence 997 5678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy7773 1014 LNMDEKV 1020 (1281)
Q Consensus 1014 ~~l~~~v 1020 (1281)
++....+
T Consensus 617 L~vl~s~ 623 (689)
T KOG1000|consen 617 LDVLGSV 623 (689)
T ss_pred HHHHhhc
Confidence 9988765
No 20
>KOG0386|consensus
Probab=100.00 E-value=1.4e-54 Score=512.28 Aligned_cols=367 Identities=63% Similarity=1.013 Sum_probs=317.8
Q ss_pred CcccCCHHHHHHHHHHhCCCCCCCHHHHHHHhcccccccCccccccHHHHHHHHHHHHHHhhhhHHhhchhhhhhcCCCc
Q psy7773 1 TPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEK 80 (1281)
Q Consensus 1 TPiqN~~~eL~sll~fL~p~~l~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~dv~~~LP~k 80 (1281)
||+||++.|||+||+||.|.+|.+...|..||+.||...|.....+.++...++.+||.+|+||+|||.|++|..+||.|
T Consensus 553 TPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdK 632 (1157)
T KOG0386|consen 553 TPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDK 632 (1157)
T ss_pred ChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchh
Confidence 89999999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhhhhhccccccCCCCCCchHHHHHHHHHHHHHcCCCcCchhhHHHHhhhhcCCCcccc
Q psy7773 81 VEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNNTVVS 160 (1281)
Q Consensus 81 ~~~~v~v~ls~~Q~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~~~~hP~l~~~~~~~~~~~~~~~~~~~~ 160 (1281)
++.++.|.||..|+.+|..+.+......+. ..+.+.+..+++.+++||++||||++|...+..+..+...
T Consensus 633 ve~viKC~mSalQq~lY~~m~~~g~l~~d~----~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~------ 702 (1157)
T KOG0386|consen 633 VEDVIKCDMSALQQSLYKQMQNKGQLLKDT----AKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDI------ 702 (1157)
T ss_pred hhHhhheehhhhhHhhhHHHHhCCCCCcCc----hhccccchhhhhHhHHHHHhcCCchhhhhhccccccccCh------
Confidence 999999999999999999998766555443 2355667889999999999999999998765544433322
Q ss_pred CCcccccCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceE
Q psy7773 161 GPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFI 240 (1281)
Q Consensus 161 ~~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~v 240 (1281)
.+++..+||+.+|.++|..+.+.|++|++|||++..+++++++|.-.++.|.++||.+..++|..+++.||.+++++++
T Consensus 703 -~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~ 781 (1157)
T KOG0386|consen 703 -KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFI 781 (1157)
T ss_pred -hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceee
Confidence 5788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhccccchhhhhc
Q psy7773 241 FLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDEKEYHR 320 (1281)
Q Consensus 241 ll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~~l~~~~~~~ 320 (1281)
||+||++||.|+|||.|++||+||++|||..+.||.+|+|||||+++|+|+|+++.+|+||.|+..+..|++++.++...
T Consensus 782 FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviqa 861 (1157)
T KOG0386|consen 782 FLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQA 861 (1157)
T ss_pred eeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhcCchHhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887765
Q ss_pred cchhhhhhhhHHHHhhhhhhhHHHhhhHHHHHHHHHHHHHhhCHHHHHHHHhhHhHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy7773 321 NNTARTQKLNKAIINYHINAEKEQKKEQERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDEYISNLTQMVKEH 400 (1281)
Q Consensus 321 ~~~~k~~kl~k~v~~~~~~~ekEe~k~~er~ekerl~~L~~~dee~y~kll~~~k~~rl~~ll~qtd~~~~~l~~~v~~~ 400 (1281)
+.... +. .....++-|+.++..+.+. .. -+-..+.-|+.+|++|++.+.-+.+|..+.
T Consensus 862 g~fdn-------------~s-------t~~eR~~~Le~~l~~~~~~-~~-~~v~~~~~ln~~larseeE~~~f~~md~~r 919 (1157)
T KOG0386|consen 862 GKFDN-------------KS-------TAEEREMFLEQLLEMEGDE-EE-EEVPDDEVLNSMLARSEEEFELFHKMDEER 919 (1157)
T ss_pred ccccC-------------CC-------cHHHHHHHHHHHHhCCCcc-cc-ccCCcHHHHHHHHhcchHHHHHHHHhhHHH
Confidence 53211 11 1111233455555432211 11 122334559999999999776666666543
No 21
>KOG0387|consensus
Probab=100.00 E-value=1.6e-53 Score=493.53 Aligned_cols=320 Identities=38% Similarity=0.623 Sum_probs=277.7
Q ss_pred CcccCCHHHHHHHHHHhCCCCCCCHHHHHHHhcccccccCccccc--cHHHHHHHHHHHHHHhhhhHHhhchhhhhh-cC
Q psy7773 1 TPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVEL--NEEETILIIRRLHKVLRPFLLRRLKKEVES-QL 77 (1281)
Q Consensus 1 TPiqN~~~eL~sll~fL~p~~l~~~~~F~~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~~~l~~~~lRR~k~dv~~-~L 77 (1281)
|||||++.|||+|++|+.||.||+...|.+.|..|+..++..... ....++.+...|+.++.||+|||+|.+|.. .|
T Consensus 374 TPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~L 453 (923)
T KOG0387|consen 374 TPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKL 453 (923)
T ss_pred ccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccC
Confidence 899999999999999999999999999999999999887765443 445688889999999999999999999998 99
Q ss_pred CCceEEEEEeCCCHHHHHHHHHHHHhhhhhccccccCCCCCCchHHHHHHHHHHHHHcCCCcCchhhHHHHhhhhcCCCc
Q psy7773 78 PEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNNT 157 (1281)
Q Consensus 78 P~k~~~~v~v~ls~~Q~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~~~~hP~l~~~~~~~~~~~~~~~~~ 157 (1281)
|.|.+++++|.||+.|+.+|+.+.+......... +..+++.-+..||++||||.|+....... ..
T Consensus 454 p~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~n--------g~~~~l~Gi~iLrkICnHPdll~~~~~~~-------~~ 518 (923)
T KOG0387|consen 454 PKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILN--------GKRNCLSGIDILRKICNHPDLLDRRDEDE-------KQ 518 (923)
T ss_pred CCccceEEEEeccHHHHHHHHHHhhhHHHHHHHc--------CCccceechHHHHhhcCCcccccCccccc-------cc
Confidence 9999999999999999999999977533221111 11234455788999999999886532111 00
Q ss_pred cccCCcccccCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHH-hCCCcEEEecCCCCHHHHHHHHHHhcCCCC
Q psy7773 158 VVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFI-WRDFSYLRLDGTTKSEDRGELLRKFNEPES 236 (1281)
Q Consensus 158 ~~~~~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~-~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~ 236 (1281)
.......+..|||+.+|..+|..|...|.+||+|+|...++++|+..|. ..|+.|++++|.++...|+.+|++||++.+
T Consensus 519 ~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s 598 (923)
T KOG0387|consen 519 GPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDES 598 (923)
T ss_pred CCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCc
Confidence 1111145778999999999999999999999999999999999999999 689999999999999999999999998655
Q ss_pred CceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhccccchh
Q psy7773 237 KYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDEK 316 (1281)
Q Consensus 237 ~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~~l~~~ 316 (1281)
++|||++|++||.|+||++|++||+|||+|||+.+.||..|+||+||++.|.||||++.|||||.||.+|..|+.+...
T Consensus 599 -~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~ 677 (923)
T KOG0387|consen 599 -IFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNR 677 (923)
T ss_pred -eEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccchhhhhhhhHHHHhh
Q psy7773 317 EYHRNNTARTQKLNKAIINY 336 (1281)
Q Consensus 317 ~~~~~~~~k~~kl~k~v~~~ 336 (1281)
+++...+.+..+.+.....|
T Consensus 678 il~~p~q~RfF~~~dl~dLF 697 (923)
T KOG0387|consen 678 ILKNPEQRRFFKGNDLHDLF 697 (923)
T ss_pred HhcCHHHhhhcccccHHHHh
Confidence 99998888877654444333
No 22
>KOG0383|consensus
Probab=100.00 E-value=2e-54 Score=514.52 Aligned_cols=393 Identities=41% Similarity=0.672 Sum_probs=352.3
Q ss_pred ccccCcccc--cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHH
Q psy7773 534 VTEQASIMV--NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWV 611 (1281)
Q Consensus 534 ~~~~p~~~~--~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~ 611 (1281)
...||..+. ++.|.+||.+|++|+...+..+..+|||||||+|||++++.++..++......+|+||++|.+++.+|.
T Consensus 282 ~~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe 361 (696)
T KOG0383|consen 282 YEDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWE 361 (696)
T ss_pred cccCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCC
Confidence 345676654 589999999999999999999999999999999999999999999998888889999999999999999
Q ss_pred HHHHHHCCCCcEEEEeCCHHHHHHHHhh--------------------hccCCccEEEechHHHhhcccccccCceeEEE
Q psy7773 612 LEFEKWAPSANVVAYKGSPLARRALQGR--------------------MKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMI 671 (1281)
Q Consensus 612 ~E~~~~~p~~~~~~~~g~~~~r~~~~~~--------------------~~~~~~~vvItTye~l~~~~~~l~~~~w~~vI 671 (1281)
+++..|.|...++.|.|+...+..+... .....|+|.+++|+++..+...+..+.|.++|
T Consensus 362 ~e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~~~il~~v~w~~li 441 (696)
T KOG0383|consen 362 REFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEIDQSILFSVQWGLLI 441 (696)
T ss_pred CchhccCCCcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccCHHHHhhhhcceeE
Confidence 9999999999999999999888665421 13457899999999999999999999999999
Q ss_pred EeCCccccccchHHHHHHHhhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHH
Q psy7773 672 IDEGHRMKNHHCKLTQTLNTFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEE 751 (1281)
Q Consensus 672 vDEaHr~kn~~s~~~~~l~~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~ 751 (1281)
+||+||++|..+.+++.+..+ ...++++|||||+||++.+|+++|+|+.|..|++...|.+.|..-
T Consensus 442 vde~~rlkn~~s~~f~~l~~~-~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~------------- 507 (696)
T KOG0383|consen 442 VDEAHRLKNKQSKRFRVLTAY-PIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDI------------- 507 (696)
T ss_pred eechhhcccchhhhhhhcccc-ccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchh-------------
Confidence 999999999999999999875 899999999999999999999999999999999999998776532
Q ss_pred HHHHHHHHHHHhhhHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHH
Q psy7773 752 ETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTI 831 (1281)
Q Consensus 752 ~~~~~~~~L~~~l~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 831 (1281)
.....+..||.++.|+|+||++.++...+|.|++.++.+.|++.|+.+|+.+..++...+.. .....++.|++
T Consensus 508 ~~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~-------~~~~~s~~n~~ 580 (696)
T KOG0383|consen 508 SCEEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA-------GVHQYSLLNIV 580 (696)
T ss_pred hHHHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh-------cchhHHHHHHH
Confidence 23345889999999999999999999999999999999999999999999998877654432 34567899999
Q ss_pred HHHHHhcCCccchhhhHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHC
Q psy7773 832 VQLRKLCNHPFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR 911 (1281)
Q Consensus 832 ~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~ 911 (1281)
|+|+|+|+|||++...++.. ......+..++..|+|+.+|..++++++..||||+||+||+.++|+|+++|...
T Consensus 581 mel~K~~~hpy~~~~~e~~~------~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~ 654 (696)
T KOG0383|consen 581 MELRKQCNHPYLSPLEEPLE------ENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYE 654 (696)
T ss_pred HHHHHhhcCcccCccccccc------cchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhcc
Confidence 99999999999998632211 112223446788999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccc
Q psy7773 912 DFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLG 954 (1281)
Q Consensus 912 g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~G 954 (1281)
+ .|.|+||+.+...|+.++++||.+++.-||||+||+|||+|
T Consensus 655 ~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 655 G-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred C-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 9 99999999999999999999999999999999999999998
No 23
>KOG0392|consensus
Probab=100.00 E-value=7.3e-52 Score=494.89 Aligned_cols=319 Identities=35% Similarity=0.635 Sum_probs=268.5
Q ss_pred CcccCCHHHHHHHHHHhCCCCCCCHHHHHHHhcccccccCccc--cccHHHHHHHHHHHHHHhhhhHHhhchhhhhhcCC
Q psy7773 1 TPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKV--ELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLP 78 (1281)
Q Consensus 1 TPiqN~~~eL~sll~fL~p~~l~~~~~F~~~~~~~~~~~~~~~--~~~~~~~~~~~~~L~~~l~~~~lRR~k~dv~~~LP 78 (1281)
||||||+.||||||+||+||++|+...|..+|..|+.+..+.. ..+.+.+..+++.||+.+-||||||+|.||+.+||
T Consensus 1137 TPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~DLP 1216 (1549)
T KOG0392|consen 1137 TPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKDLP 1216 (1549)
T ss_pred CCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999999999999999998766543 34456677889999999999999999999999999
Q ss_pred CceEEEEEeCCCHHHHHHHHHHHHhhhhhccccccCCCCCC--chHHHHHHHHHHHHHcCCCcCchhh----HHHHhhhh
Q psy7773 79 EKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEG--GARALKNTIVQLRKLCNHPFMFQNI----EEKYCQHI 152 (1281)
Q Consensus 79 ~k~~~~v~v~ls~~Q~~~Y~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~Lr~~~~hP~l~~~~----~~~~~~~~ 152 (1281)
||+.+..+|+|||.|+++|+.+.............+..... ...++|+.+..||+.||||.|.... ......++
T Consensus 1217 pKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l 1296 (1549)
T KOG0392|consen 1217 PKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHL 1296 (1549)
T ss_pred hhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHH
Confidence 99999999999999999999998873332222222221111 2678999999999999999987652 11111111
Q ss_pred cCCCccccCCcccccCcHHHHHHHHHHHhhh--------------CCCeEEEEeccHHHHHHHHHHHHhC---CCcEEEe
Q psy7773 153 GQNNTVVSGPDIYRTSGKFELLDRILPKFKE--------------TKHRVLMFCQMTQLMTILEDYFIWR---DFSYLRL 215 (1281)
Q Consensus 153 ~~~~~~~~~~~~~~~s~K~~~L~~ll~~~~~--------------~~~kvlIFs~~~~~~~~l~~~l~~~---g~~~~~~ 215 (1281)
.... .....+..|||+.+|.++|..+.- .++++|||||+.++++++++-|-.. .+.|+++
T Consensus 1297 ~~~~---~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRL 1373 (1549)
T KOG0392|consen 1297 AHFN---SSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRL 1373 (1549)
T ss_pred HHhh---hhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEe
Confidence 1111 111235679999999999988641 4689999999999999999888655 5578899
Q ss_pred cCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEe
Q psy7773 216 DGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLIT 295 (1281)
Q Consensus 216 ~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~ 295 (1281)
||++++.+|++++.+||++++ +.|+|++|.+||.|||||+|++|||++.+|||.++.||++|+|||||++.|.|||||+
T Consensus 1374 DGSVpp~~R~kiV~~FN~Dpt-IDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlIt 1452 (1549)
T KOG0392|consen 1374 DGSVPPGDRQKIVERFNEDPT-IDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLIT 1452 (1549)
T ss_pred cCCCCcHHHHHHHHHhcCCCc-eeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehh
Confidence 999999999999999998554 8999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHhhccccchhhhhccch
Q psy7773 296 VNSVEERILAAARYKLNMDEKEYHRNNT 323 (1281)
Q Consensus 296 ~~Tiee~i~~~~~~K~~l~~~~~~~~~~ 323 (1281)
+||+||+|+..|..|.+.+.-+++..+.
T Consensus 1453 rGTLEEKVMgLQkFKmnvAntvInqqNa 1480 (1549)
T KOG0392|consen 1453 RGTLEEKVMGLQKFKMNVANTVINQQNA 1480 (1549)
T ss_pred cccHHHHHhhHHHHhhHHHHHHHhcccc
Confidence 9999999999999999998777766553
No 24
>KOG0389|consensus
Probab=100.00 E-value=9.7e-50 Score=461.18 Aligned_cols=313 Identities=41% Similarity=0.635 Sum_probs=257.6
Q ss_pred CcccCCHHHHHHHHHHhCCCCCCC-HHHHHHHhcccccccCccccccHHHHHHHHHHHHHHhhhhHHhhchhhhhhcCCC
Q psy7773 1 TPLQNKLPELWALLNFLLPSIFKS-CSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPE 79 (1281)
Q Consensus 1 TPiqN~~~eL~sll~fL~p~~l~~-~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~dv~~~LP~ 79 (1281)
||+||||.||||||.|+.|.+|.+ ..++...|.......++. -+.-...+.+.+-..+|.||+|||+|.+|+.+|||
T Consensus 561 TPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~--e~~~l~qerIsrAK~im~PFILRR~K~qVL~~LPp 638 (941)
T KOG0389|consen 561 TPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDI--ENALLSQERISRAKTIMKPFILRRLKSQVLKQLPP 638 (941)
T ss_pred CcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchh--hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999964 457777665533221111 11122334678899999999999999999999999
Q ss_pred ceEEEEEeCCCHHHHHHHHHHHHhhhhhccccccCCCCCCchHHHHHHHHHHHHHcCCCcCchhhH--------------
Q psy7773 80 KVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIE-------------- 145 (1281)
Q Consensus 80 k~~~~v~v~ls~~Q~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~~~~hP~l~~~~~-------------- 145 (1281)
|+.++.+|+|+..|+.+|..+.+........ .... ..... -+.+|+||+++|||.|+...-
T Consensus 639 K~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~--~~~n-s~~~~--~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il~ 713 (941)
T KOG0389|consen 639 KIQRIEYCEMSEKQKQLYDELIELYDVKLNE--VSKN-SELKS--GNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRILN 713 (941)
T ss_pred ccceeEeeecchHHHHHHHHHHHHHhhhccc--cccc-ccccc--chHHHHHHHHhcChhHHHHhccHHHHHHHHHHHhC
Confidence 9999999999999999999987754211111 1111 00111 468999999999998874321
Q ss_pred ------------------------HHHhhhhcCCCccccCCcccccCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHH
Q psy7773 146 ------------------------EKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTIL 201 (1281)
Q Consensus 146 ------------------------~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l 201 (1281)
..+|........+......|..|+|+..|..+|..+...|++|||||||+.++++|
T Consensus 714 e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDIL 793 (941)
T KOG0389|consen 714 EPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDIL 793 (941)
T ss_pred chhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHH
Confidence 11222233444455556678899999999999999999999999999999999999
Q ss_pred HHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhh
Q psy7773 202 EDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHR 281 (1281)
Q Consensus 202 ~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R 281 (1281)
+.+|...|+.|++++|+|....|+.+|+.|+... .++|||+||+|||.||||++|++||++|.++||-.+.||.+||||
T Consensus 794 E~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~-difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHR 872 (941)
T KOG0389|consen 794 EVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDK-DIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHR 872 (941)
T ss_pred HHHHHhcCceEEeecCCccchHHHHHHHhhccCC-ceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHh
Confidence 9999999999999999999999999999999854 599999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEEEeccchHHHHHHHHhhccccchhhhhcc
Q psy7773 282 IGQKNEVRVLRLITVNSVEERILAAARYKLNMDEKEYHRN 321 (1281)
Q Consensus 282 ~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~~l~~~~~~~~ 321 (1281)
+||+++|+|||||+++||||.|+.++..|+.+...+....
T Consensus 873 vGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~ 912 (941)
T KOG0389|consen 873 VGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDG 912 (941)
T ss_pred hCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCc
Confidence 9999999999999999999999999999998866554433
No 25
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=3.1e-49 Score=497.34 Aligned_cols=297 Identities=52% Similarity=0.877 Sum_probs=262.3
Q ss_pred CcccCCHHHHHHHHHHhCCCCCCCHHHHHHHhcccccccCccccccHHHHHHHHHHHHHHhhhhHHhhchhhhhhcCCCc
Q psy7773 1 TPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEK 80 (1281)
Q Consensus 1 TPiqN~~~eL~sll~fL~p~~l~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~dv~~~LP~k 80 (1281)
||+||++.|||+||+||.|++|++...|..||..... ......+.+|+.+|.||++||+|.+|...|||+
T Consensus 328 TPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~----------~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK 397 (1033)
T PLN03142 328 TPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGE----------NDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPK 397 (1033)
T ss_pred CCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccc----------cchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCc
Confidence 9999999999999999999999999999999976321 112345788999999999999999999999999
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhhhhhccccccCCCCCCchHHHHHHHHHHHHHcCCCcCchhhHHHHhhhhcCCCcccc
Q psy7773 81 VEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNNTVVS 160 (1281)
Q Consensus 81 ~~~~v~v~ls~~Q~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~~~~hP~l~~~~~~~~~~~~~~~~~~~~ 160 (1281)
.+.+|+|.||+.|+.+|+.+........... .....+++.+++||++|+||+|+..... ......
T Consensus 398 ~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g-------~~~~~LlnilmqLRk~cnHP~L~~~~ep--------~~~~~~ 462 (1033)
T PLN03142 398 KETILKVGMSQMQKQYYKALLQKDLDVVNAG-------GERKRLLNIAMQLRKCCNHPYLFQGAEP--------GPPYTT 462 (1033)
T ss_pred eeEEEeeCCCHHHHHHHHHHHHHHHHHHhcc-------ccHHHHHHHHHHHHHHhCCHHhhhcccc--------cCcccc
Confidence 9999999999999999999987654433221 2345688999999999999998764321 112223
Q ss_pred CCcccccCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceE
Q psy7773 161 GPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFI 240 (1281)
Q Consensus 161 ~~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~v 240 (1281)
...++..|+|+.+|..+|..+...|+||||||||+.++++|+++|...|+.|++|+|+++..+|+.+++.|+++++...|
T Consensus 463 ~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~V 542 (1033)
T PLN03142 463 GEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFV 542 (1033)
T ss_pred hhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceE
Confidence 34466789999999999999999999999999999999999999999999999999999999999999999987776789
Q ss_pred EEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhccccchhhhhc
Q psy7773 241 FLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDEKEYHR 320 (1281)
Q Consensus 241 ll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~~l~~~~~~~ 320 (1281)
||+||++||+||||+.|++||+||++|||+.+.||+||+||+||+++|+||+|++.|||||+|++++..|..++..++..
T Consensus 543 fLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~~Vi~~ 622 (1033)
T PLN03142 543 FLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQ 622 (1033)
T ss_pred EEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887765
Q ss_pred cc
Q psy7773 321 NN 322 (1281)
Q Consensus 321 ~~ 322 (1281)
+.
T Consensus 623 g~ 624 (1033)
T PLN03142 623 GR 624 (1033)
T ss_pred Cc
Confidence 53
No 26
>KOG1001|consensus
Probab=100.00 E-value=1.6e-48 Score=473.21 Aligned_cols=456 Identities=29% Similarity=0.443 Sum_probs=368.2
Q ss_pred HHHHHHHHHHHHhh-cCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC------CCCCEEEEeCCccHHHHHHHHHHHCC-
Q psy7773 548 EYQIKGLEWMVSLY-NNNLNGILADEMGLGKTVQTIALLTYLMEKKK------NLGPYLVIVPLSTLSNWVLEFEKWAP- 619 (1281)
Q Consensus 548 ~yQ~~gv~~l~~~~-~~~~~gILademGlGKTi~ai~ll~~l~~~~~------~~~~~LIV~P~s~l~~W~~E~~~~~p- 619 (1281)
.+|..+..|+.... ..-.|||+||+||+|||+++++++........ ..+..|||||.+++.||..|+.+..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 55555554444332 23347899999999999999999876543333 45678999999999999999966654
Q ss_pred -CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcE
Q psy7773 620 -SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHR 698 (1281)
Q Consensus 620 -~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~r 698 (1281)
.+.+.+|+| |. ........++||||||.++.. ..+..+.|-.||+||||.++|..++.++++..+ .+.+|
T Consensus 215 ~~l~v~v~~g----r~--kd~~el~~~dVVltTy~il~~--~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L-~a~~R 285 (674)
T KOG1001|consen 215 DKLSIYVYHG----RT--KDKSELNSYDVVLTTYDILKN--SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQL-DAKYR 285 (674)
T ss_pred cceEEEEecc----cc--cccchhcCCceEEeeHHHhhc--ccccceeEEEEEeccccccCCcchHhhhhheee-cccee
Confidence 466778888 11 112224678899999999976 566678999999999999999999999999876 99999
Q ss_pred EEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHH--
Q psy7773 699 VLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEV-- 776 (1281)
Q Consensus 699 llLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v-- 776 (1281)
|+|||||+||++.++|+++.|+.-..+.....|...+..|+..... .....++..+|.++++||+|..-
T Consensus 286 WcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~---------~~~~k~l~~~L~~v~lrrtK~~~~~ 356 (674)
T KOG1001|consen 286 WCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKY---------KEGVKTLQGILKKVMLRRTKEMEVD 356 (674)
T ss_pred eeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhH---------HHHHHHHHHHHHHHHhccccccccc
Confidence 9999999999999999999999999999999999888888754431 34578899999999999999632
Q ss_pred ---hhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhH-----
Q psy7773 777 ---ESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIE----- 848 (1281)
Q Consensus 777 ---~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~----- 848 (1281)
...+|++...++.+.++..++.+|..+....................+..+...+.+||++|+||+++....
T Consensus 357 gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~ 436 (674)
T KOG1001|consen 357 GKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGD 436 (674)
T ss_pred CccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhcccc
Confidence 336999999999999999999999999877665555544445555677788889999999999998763210
Q ss_pred --------HHHHhhhc--------CC--Ccccc----------------------------------------CCccc--
Q psy7773 849 --------EKYCQHIG--------QN--NTVVS----------------------------------------GPDIY-- 868 (1281)
Q Consensus 849 --------~~~~~~~~--------~~--~~~~~----------------------------------------~~~~~-- 868 (1281)
......+. .. ..+.. .....
T Consensus 437 ~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~~~~~~ 516 (674)
T KOG1001|consen 437 SGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLPSIIND 516 (674)
T ss_pred ccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccccchhhh
Confidence 00000000 00 00000 00001
Q ss_pred --cccchHHHHHHHhhhhhhcCC-eEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEE
Q psy7773 869 --RTSGKFELLDRILPKFKETKH-RVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFL 945 (1281)
Q Consensus 869 --~~s~K~~~L~~lL~~~~~~~~-kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~L 945 (1281)
..|.|+..+..+|........ ++|||||++.+++++...|...|+.+.+++|.++...|.+.+..|+ .+..+.|+|
T Consensus 517 ~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~-~~~~~~vll 595 (674)
T KOG1001|consen 517 LLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFP-CDPLVTALL 595 (674)
T ss_pred ccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccc-cCccHHHHH
Confidence 137788888888875554444 9999999999999999999999999999999999999999999999 467788999
Q ss_pred EeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHh
Q psy7773 946 LSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDEKVIQ 1022 (1281)
Q Consensus 946 lsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~~~~K~~l~~~vi~ 1022 (1281)
+|.+|||.||||..|++|+++|++|||....||++||||+||+++|.|+||+..+|+|++|+..+..|..+...+.+
T Consensus 596 ~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~~a~~ 672 (674)
T KOG1001|consen 596 MSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNASAFG 672 (674)
T ss_pred HHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877654
No 27
>KOG0388|consensus
Probab=100.00 E-value=6.1e-48 Score=437.01 Aligned_cols=301 Identities=46% Similarity=0.808 Sum_probs=254.0
Q ss_pred CcccCCHHHHHHHHHHhCCCCCCCHHHHHHHhcccccccCccccccHHHHHHHHHHHHHHhhhhHHhhchhhhhhcCCCc
Q psy7773 1 TPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEK 80 (1281)
Q Consensus 1 TPiqN~~~eL~sll~fL~p~~l~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~dv~~~LP~k 80 (1281)
|||||++.|||+||+||+|.+|.+..+|..||+..+........ .-....+.+||.+|.||||||.|++|..+|..|
T Consensus 732 TPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~---tlneqqL~RLH~ILKPFMLRRvKkdV~sELg~K 808 (1185)
T KOG0388|consen 732 TPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNT---TLNEQQLQRLHAILKPFMLRRVKKDVISELGQK 808 (1185)
T ss_pred CccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcC---CcCHHHHHHHHHHHhHHHHHHHHHHHHHHhccc
Confidence 89999999999999999999999999999999887654332211 112345889999999999999999999999999
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhhhhhccccccCCCCCCchHHHHHHHHHHHHHcCCCcCchhhHH--------------
Q psy7773 81 VEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEE-------------- 146 (1281)
Q Consensus 81 ~~~~v~v~ls~~Q~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~~~~hP~l~~~~~~-------------- 146 (1281)
++..|+|+||.-|+.+|+.+..... ...++.++++||++||||.||.....
T Consensus 809 teidv~CdLs~RQ~~lYq~ik~~iS---------------~~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl~d 873 (1185)
T KOG0388|consen 809 TEIDVYCDLSYRQKVLYQEIKRSIS---------------SMEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNLGD 873 (1185)
T ss_pred eEEEEEechhHHHHHHHHHHHHHhh---------------HHHHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccCHHH
Confidence 9999999999999999999876422 23445689999999999976621100
Q ss_pred ----------------------------------HHhh------------------------------------------
Q psy7773 147 ----------------------------------KYCQ------------------------------------------ 150 (1281)
Q Consensus 147 ----------------------------------~~~~------------------------------------------ 150 (1281)
..+.
T Consensus 874 v~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr~l 953 (1185)
T KOG0388|consen 874 VVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTRNL 953 (1185)
T ss_pred HHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHHHHHh
Confidence 0000
Q ss_pred ------------------------hhcC-CCccccC-------------------------------CcccccCcHHHHH
Q psy7773 151 ------------------------HIGQ-NNTVVSG-------------------------------PDIYRTSGKFELL 174 (1281)
Q Consensus 151 ------------------------~~~~-~~~~~~~-------------------------------~~~~~~s~K~~~L 174 (1281)
+... ...+... ...+..|+|+..|
T Consensus 954 l~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~Ppm~~FitdSgKL~~L 1033 (1185)
T KOG0388|consen 954 LNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYVPPMNTFITDSGKLVVL 1033 (1185)
T ss_pred cCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccceecCcHHhhhccccceeeH
Confidence 0000 0000000 0014469999999
Q ss_pred HHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCC
Q psy7773 175 DRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNL 254 (1281)
Q Consensus 175 ~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL 254 (1281)
..+|..+.+.|++||+|.|++.++++|+++|..+|+.|.+++|+....+|..++.+|+. +.++|||+||+|||.||||
T Consensus 1034 DeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~--sdiFvFLLSTRAGGLGINL 1111 (1185)
T KOG0388|consen 1034 DELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA--SDIFVFLLSTRAGGLGINL 1111 (1185)
T ss_pred HHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC--CceEEEEEecccCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999998 5699999999999999999
Q ss_pred CCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhccccchhhhhcc
Q psy7773 255 QAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDEKEYHRN 321 (1281)
Q Consensus 255 ~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~~l~~~~~~~~ 321 (1281)
++|++|||||.+|||+.+.||++|+||+||+++|+||||+++|||||+|+.++..|-.+...+.+.+
T Consensus 1112 TAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm~G~ 1178 (1185)
T KOG0388|consen 1112 TAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMVMHGN 1178 (1185)
T ss_pred cccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999999999999988877766654
No 28
>KOG0391|consensus
Probab=100.00 E-value=5.3e-47 Score=446.69 Aligned_cols=156 Identities=45% Similarity=0.804 Sum_probs=150.7
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
+||+..|.-||++++..|++||||+|++.++++|+.+|..+|+-|+++||.++.++|+.++++||. +.++++||+||.+
T Consensus 1259 cGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNa-D~RIfcfILSTrS 1337 (1958)
T KOG0391|consen 1259 CGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNA-DRRIFCFILSTRS 1337 (1958)
T ss_pred cchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcC-CCceEEEEEeccC
Confidence 799999999999999999999999999999999999999999999999999999999999999997 6789999999999
Q ss_pred cccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhccccchhhhhccchh
Q psy7773 248 GGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDEKEYHRNNTA 324 (1281)
Q Consensus 248 ~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~~l~~~~~~~~~~~ 324 (1281)
||.||||++|++|||||.+|||+.+.||.+|||||||+++|+|||||...||||.|+..+..|..+...++..+...
T Consensus 1338 ggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkkanqKr~L~evaiqggdfT 1414 (1958)
T KOG0391|consen 1338 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKANQKRMLDEVAIQGGDFT 1414 (1958)
T ss_pred CccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhhhHHHHHHHHhhccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988887776643
No 29
>KOG0390|consensus
Probab=100.00 E-value=1.2e-43 Score=425.81 Aligned_cols=313 Identities=33% Similarity=0.523 Sum_probs=258.6
Q ss_pred CcccCCHHHHHHHHHHhCCCCCCCHHHHHHHhcccccccCccccccHH-HHHHHHHHHHHHhhhhHHhhchhhhhhcCCC
Q psy7773 1 TPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEE-ETILIIRRLHKVLRPFLLRRLKKEVESQLPE 79 (1281)
Q Consensus 1 TPiqN~~~eL~sll~fL~p~~l~~~~~F~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~~l~~~~lRR~k~dv~~~LP~ 79 (1281)
||+||++.|+|++|+|++|++|++...|...|..+...+++....++. ...+.+.+|+.+...|++||+.......||+
T Consensus 413 Tp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~ 492 (776)
T KOG0390|consen 413 TPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLKYLPG 492 (776)
T ss_pred CcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhhhCCC
Confidence 999999999999999999999999999999999988776554332221 2244588999999999999999888889999
Q ss_pred ceEEEEEeCCCHHHHHHHHHHHHhhhhhccccccCCCCCCchHHHHHHHHHHHHHcCCCcCchhhHHHHh-------hhh
Q psy7773 80 KVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYC-------QHI 152 (1281)
Q Consensus 80 k~~~~v~v~ls~~Q~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~~~~hP~l~~~~~~~~~-------~~~ 152 (1281)
+.+++|+|.+|+.|..+|..+.+.. .. ... ....+..++.|+++||||.|+...+.... ...
T Consensus 493 k~e~vv~~n~t~~Q~~~~~~l~~~~-~~-~~~---------~~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~ 561 (776)
T KOG0390|consen 493 KYEYVVFCNPTPIQKELYKKLLDSM-KM-RTL---------KGYALELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALL 561 (776)
T ss_pred ceeEEEEeCCcHHHHHHHHHHHHHH-Hh-hhh---------hcchhhHHHHHHHHhcCHHhhcccccccccccccChHhh
Confidence 9999999999999999999998753 11 000 01156778999999999998752111000 000
Q ss_pred cCCCccccCCcccccCcHHHHHHHHHHHhhh-CCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHh
Q psy7773 153 GQNNTVVSGPDIYRTSGKFELLDRILPKFKE-TKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKF 231 (1281)
Q Consensus 153 ~~~~~~~~~~~~~~~s~K~~~L~~ll~~~~~-~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F 231 (1281)
......-........|+|+..|..+|....+ .-.++++.++++.+++.++..+..+|+.++++||.++..+|+.+++.|
T Consensus 562 ~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~F 641 (776)
T KOG0390|consen 562 LDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTF 641 (776)
T ss_pred hcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhc
Confidence 0001111112223358899999999855544 346788888999999999999999999999999999999999999999
Q ss_pred cCCCCCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhcc
Q psy7773 232 NEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKL 311 (1281)
Q Consensus 232 ~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~ 311 (1281)
|++.+..+|||+|++|||+||||.+|++||+||++|||+.+.||++||||.||+++|+||||++.||+||.||++|..|.
T Consensus 642 N~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~ 721 (776)
T KOG0390|consen 642 NDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKE 721 (776)
T ss_pred cCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhh
Confidence 99888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhccchh
Q psy7773 312 NMDEKEYHRNNTA 324 (1281)
Q Consensus 312 ~l~~~~~~~~~~~ 324 (1281)
.+...++..+...
T Consensus 722 ~lS~~v~~~~~~~ 734 (776)
T KOG0390|consen 722 GLSSMVFDEEEDV 734 (776)
T ss_pred hhhheEEeccccc
Confidence 9999888877643
No 30
>KOG1015|consensus
Probab=100.00 E-value=2.2e-42 Score=401.72 Aligned_cols=334 Identities=29% Similarity=0.440 Sum_probs=268.2
Q ss_pred CcccCCHHHHHHHHHHhCCCCCCCHHHHHHHhcccccccCccccccHHHHHHH---HHHHHHHhhhhHHhhchhhhhhcC
Q psy7773 1 TPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILI---IRRLHKVLRPFLLRRLKKEVESQL 77 (1281)
Q Consensus 1 TPiqN~~~eL~sll~fL~p~~l~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~---~~~L~~~l~~~~lRR~k~dv~~~L 77 (1281)
||+||||.|+|+|++|+.|++||+..+|+++|.+|+.. |+....+.....-+ -.-|+.+|..|+-|+....+...|
T Consensus 858 TPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~n-Gq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~L 936 (1567)
T KOG1015|consen 858 TPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQN-GQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFL 936 (1567)
T ss_pred CchhhhhHHHHHHHHhcccccccCcHHHHHhhcCcccc-CccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccC
Confidence 89999999999999999999999999999999999854 44444444433333 334889999999999999999999
Q ss_pred CCceEEEEEeCCCHHHHHHHHHHHHhhhhhccccccCCCCCCchHHHHHHHHHHHHHcCCCcCchhhHH-----------
Q psy7773 78 PEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEE----------- 146 (1281)
Q Consensus 78 P~k~~~~v~v~ls~~Q~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~~~~hP~l~~~~~~----------- 146 (1281)
|||++++|.|.||+.|..+|+.+++.... .......+.+....+|+-+..|++|++||++++-...
T Consensus 937 PPK~eyVi~vrltelQ~~LYq~yL~h~~~---~G~d~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~sed 1013 (1567)
T KOG1015|consen 937 PPKHEYVIAVRLTELQCKLYQYYLDHLTG---VGNDSEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSED 1013 (1567)
T ss_pred CCceeEEEEEeccHHHHHHHHHHHhhccc---cCCccccccchhhhHHHHHHHHHHHhcCCCceeechhhhhhccccccc
Confidence 99999999999999999999999883221 1111222233556789999999999999986421100
Q ss_pred ----HHhhh--------------------------------------------------hcCC--------C--------
Q psy7773 147 ----KYCQH--------------------------------------------------IGQN--------N-------- 156 (1281)
Q Consensus 147 ----~~~~~--------------------------------------------------~~~~--------~-------- 156 (1281)
..+.. .... .
T Consensus 1014 dm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~ 1093 (1567)
T KOG1015|consen 1014 DMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLE 1093 (1567)
T ss_pred chhccccCCCccccccccccchhhcccccccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhh
Confidence 00000 0000 0
Q ss_pred --------ccccC------------CcccccCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHh---------
Q psy7773 157 --------TVVSG------------PDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIW--------- 207 (1281)
Q Consensus 157 --------~~~~~------------~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~--------- 207 (1281)
..... ......|+|+.+|.++|+.+.+-|.|+|||||+...+++|+.+|..
T Consensus 1094 dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~ 1173 (1567)
T KOG1015|consen 1094 DLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDK 1173 (1567)
T ss_pred cccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCcccc
Confidence 00000 0113459999999999999999999999999999999999999953
Q ss_pred -------------CCCcEEEecCCCCHHHHHHHHHHhcCCC-CCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhh
Q psy7773 208 -------------RDFSYLRLDGTTKSEDRGELLRKFNEPE-SKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDL 273 (1281)
Q Consensus 208 -------------~g~~~~~~~g~~~~~~R~~~i~~F~~~~-~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~ 273 (1281)
.|..|.+|+|+++..+|++++..||++. -..+++||||+|||.||||.+||+|||||-.|||+.+.
T Consensus 1174 d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDt 1253 (1567)
T KOG1015|consen 1174 DKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDT 1253 (1567)
T ss_pred ccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccch
Confidence 2567999999999999999999999863 35678999999999999999999999999999999999
Q ss_pred HHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhccccchhhhhccchhhhhhhhHHHHhhhh
Q psy7773 274 QAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDEKEYHRNNTARTQKLNKAIINYHI 338 (1281)
Q Consensus 274 Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~~l~~~~~~~~~~~k~~kl~k~v~~~~~ 338 (1281)
|+|-|+||+||+++|+||||++.||+|++||.+|..|..+.++++....-.+....+.....|..
T Consensus 1254 QSIFRvyRfGQtKPvyiYRfiAqGTmEeKIYkRQVTKqsls~RVVDeqQv~Rhy~~neLteLy~f 1318 (1567)
T KOG1015|consen 1254 QSIFRVYRFGQTKPVYIYRFIAQGTMEEKIYKRQVTKQSLSFRVVDEQQVERHYTMNELTELYTF 1318 (1567)
T ss_pred HHHHHHHhhcCcCceeehhhhhcccHHHHHHHHHHhHhhhhhhhhhHHHHHHHhhHhhhHHHhhc
Confidence 99999999999999999999999999999999999999999998887766666555555555443
No 31
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=3.9e-40 Score=379.98 Aligned_cols=281 Identities=38% Similarity=0.680 Sum_probs=229.9
Q ss_pred HHHHHHHHHHHhh---------cCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCC--CCEEEEeCCccHHHHHHHHHHH
Q psy7773 549 YQIKGLEWMVSLY---------NNNLNGILADEMGLGKTVQTIALLTYLMEKKKNL--GPYLVIVPLSTLSNWVLEFEKW 617 (1281)
Q Consensus 549 yQ~~gv~~l~~~~---------~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~--~~~LIV~P~s~l~~W~~E~~~~ 617 (1281)
||+.||.||+.++ ....||||||+||+|||+++++++.++....... +++|||||.+++.+|..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 7788999999999999999999999887654433 3699999999999999999999
Q ss_pred C-C-CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHh-----hcccccccCceeEEEEeCCccccccchHHHHHHH
Q psy7773 618 A-P-SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFII-----KDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLN 690 (1281)
Q Consensus 618 ~-p-~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~-----~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~ 690 (1281)
+ | ..++++|.|...... ........++|+||||+.+. .....+..++|++|||||||+++|..+..++++.
T Consensus 81 ~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l~ 158 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRR--LSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKALR 158 (299)
T ss_dssp SGT-TS-EEEESSSCHHHH--TTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHHH
T ss_pred ccccccccccccccccccc--ccccccccceeeeccccccccccccccccccccccceeEEEeccccccccccccccccc
Confidence 9 4 688999988862222 22334577999999999999 6777888889999999999999999999999999
Q ss_pred hhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHH
Q psy7773 691 TFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLR 770 (1281)
Q Consensus 691 ~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lR 770 (1281)
.+ .+.++|+|||||++|++.|+|++++||.|..+.+...|.++|..+ ..........+|..+++++++|
T Consensus 159 ~l-~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~----------~~~~~~~~~~~L~~~l~~~~~r 227 (299)
T PF00176_consen 159 KL-RARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP----------DKENSYENIERLRELLSEFMIR 227 (299)
T ss_dssp CC-CECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH----------HHTHHHHHHHHHHHHHCCCEEC
T ss_pred cc-ccceEEeeccccccccccccccchheeeccccccchhhhhhhhhh----------ccccccccccccccccchhhhh
Confidence 85 899999999999999999999999999999999999999988655 2233445678899999999999
Q ss_pred HhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccch
Q psy7773 771 RLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMF 844 (1281)
Q Consensus 771 R~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~ 844 (1281)
|++.++...+|+..+.++.|+||+.|+.+|+.+............ .........++..+++||++|+||+|.
T Consensus 228 ~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 228 RTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSS--RKKSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp HCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T----TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred hhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHHHHHHHHHhCCcccC
Confidence 999999889999999999999999999999988776555443322 223455678999999999999999873
No 32
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7.5e-39 Score=389.39 Aligned_cols=383 Identities=18% Similarity=0.293 Sum_probs=269.5
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcc-HHHHHHHHHHHC--C
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLST-LSNWVLEFEKWA--P 619 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~-l~~W~~E~~~~~--p 619 (1281)
...|||||.+++.+++.. ....+|||+.+||+|||++++++++.+ .+++|||||.++ +.||..+|.+|+ +
T Consensus 253 ~~~LRpYQ~eAl~~~~~~-gr~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CCCcCHHHHHHHHHHHhc-CCCCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 468999999999988641 122589999999999999999888765 268999999876 689999999997 3
Q ss_pred CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc----------cccccCceeEEEEeCCccccccchHHHHHH
Q psy7773 620 SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK----------SVLSKIQWKCMIIDEGHRMKNHHCKLTQTL 689 (1281)
Q Consensus 620 ~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~----------~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l 689 (1281)
...+..|.|..... ......|+||||+++.... ..+....|++||+||||++.+.. ..+++
T Consensus 326 ~~~I~~~tg~~k~~-------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~--fr~il 396 (732)
T TIGR00603 326 DSQICRFTSDAKER-------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAM--FRRVL 396 (732)
T ss_pred CceEEEEecCcccc-------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHH--HHHHH
Confidence 45566777753221 1234689999999986431 23445589999999999996533 33455
Q ss_pred HhhhccCcEEEeecCCCCCChhHHHHHHhhh-cCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHH
Q psy7773 690 NTFYNSSHRVLLTGTPLQNKLPELWALLNFL-LPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFL 768 (1281)
Q Consensus 690 ~~~~~~~~rllLTgTPl~n~~~el~~ll~fl-~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 768 (1281)
.. +.+.+||+|||||+.++- .+..++++ .|.++.. .+. .++.
T Consensus 397 ~~-l~a~~RLGLTATP~ReD~--~~~~L~~LiGP~vye~--~~~-----------------------------eLi~--- 439 (732)
T TIGR00603 397 TI-VQAHCKLGLTATLVREDD--KITDLNFLIGPKLYEA--NWM-----------------------------ELQK--- 439 (732)
T ss_pred Hh-cCcCcEEEEeecCcccCC--chhhhhhhcCCeeeec--CHH-----------------------------HHHh---
Confidence 44 488999999999998763 34445443 4444311 000 0000
Q ss_pred HHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhH
Q psy7773 769 LRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIE 848 (1281)
Q Consensus 769 lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~ 848 (1281)
...|.+.....|+|+|++....-|..... . ... .| ++
T Consensus 440 --------~G~LA~~~~~ev~v~~t~~~~~~yl~~~~-----------------~-~k~-----~l--~~---------- 476 (732)
T TIGR00603 440 --------KGFIANVQCAEVWCPMTPEFYREYLRENS-----------------R-KRM-----LL--YV---------- 476 (732)
T ss_pred --------CCccccceEEEEEecCCHHHHHHHHHhcc-----------------h-hhh-----HH--hh----------
Confidence 11356666778999999875444421100 0 000 00 00
Q ss_pred HHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHH
Q psy7773 849 EKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRG 928 (1281)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~ 928 (1281)
....|+..+..++......++++||||+++..+..+...| +. ..|+|.|+..+|.
T Consensus 477 --------------------~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~~--~~I~G~ts~~ER~ 531 (732)
T TIGR00603 477 --------------------MNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---GK--PFIYGPTSQQERM 531 (732)
T ss_pred --------------------hChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---CC--ceEECCCCHHHHH
Confidence 1236889998888877678999999999999888887776 33 4489999999999
Q ss_pred HHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCC-ChhhhhhHhHhHHhhCCCCc-----eEEEEEEeCCCH
Q psy7773 929 ELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDW-NPHQDLQAQDRAHRIGQKNE-----VRVLRLITVNSV 1002 (1281)
Q Consensus 929 ~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~w-np~~~~Qa~gR~~RiGQ~k~-----V~V~rli~~~ti 1002 (1281)
++++.|+.++ .+. +|++|++|++||||+.|++||++++++ |+.+++||+||+.|.+..+. .++|.||+.+|.
T Consensus 532 ~il~~Fr~~~-~i~-vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 532 QILQNFQHNP-KVN-TIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred HHHHHHHhCC-Ccc-EEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 9999998632 334 477889999999999999999999986 99999999999999997654 799999999999
Q ss_pred HHHHHHHHHHHH---HHHHHHHh--cCcCC----CCCChhhHHHHHHHHhccCCc
Q psy7773 1003 EERILAAARYKL---NMDEKVIQ--AGMFD----QKSTGSERHEFLQTILHQDDE 1048 (1281)
Q Consensus 1003 Ee~I~~~~~~K~---~l~~~vi~--~g~~~----~~~~~~~~~~~l~~il~~~~~ 1048 (1281)
|+....+.+.=+ ...-.||. .|+.+ .-.+..+..++|+.+|...+.
T Consensus 610 E~~~s~~Rq~fl~~qGY~~~vi~~~~~~~~~~~l~~~~~~~~~~ll~~~l~~~~~ 664 (732)
T TIGR00603 610 EMYYSTKRQRFLVDQGYSFKVITHLPGMDNESNLAYSSKEEQLELLQKVLLAGDL 664 (732)
T ss_pred HHHHHHHHHHHHHHCCCeeEEEecCcccccccccccCCHHHHHHHHHHHHhCccc
Confidence 988855433221 11112221 12211 124556677778887766553
No 33
>KOG1002|consensus
Probab=100.00 E-value=5.8e-39 Score=352.36 Aligned_cols=322 Identities=28% Similarity=0.402 Sum_probs=253.5
Q ss_pred CcccCCHHHHHHHHHHhCCCCCCCHH---------HHH------------------HHhcccccccCccccccHHHHHHH
Q psy7773 1 TPLQNKLPELWALLNFLLPSIFKSCS---------TFE------------------QWFNAPFATTGEKVELNEEETILI 53 (1281)
Q Consensus 1 TPiqN~~~eL~sll~fL~p~~l~~~~---------~F~------------------~~~~~~~~~~~~~~~~~~~~~~~~ 53 (1281)
||+||+..|||||++||.-++|.-+- .|. .+|+. +....-......+.+..+
T Consensus 353 TPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~-~mlk~IqkfG~eGpGk~a 431 (791)
T KOG1002|consen 353 TPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSHNIMQHTCFFNH-FMLKPIQKFGVEGPGKEA 431 (791)
T ss_pred CcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcccchhhhhhhhhcc-cccccchhhcccCchHHH
Confidence 89999999999999999877663210 000 00000 000000111122234445
Q ss_pred HHHHHHHhhhhHHhhchhhhhh--cCCCceEEEEEeCCCHHHHHHHHHHHHhhhhhccccccCCCCCCchHHHHHHHHHH
Q psy7773 54 IRRLHKVLRPFLLRRLKKEVES--QLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQL 131 (1281)
Q Consensus 54 ~~~L~~~l~~~~lRR~k~dv~~--~LP~k~~~~v~v~ls~~Q~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 131 (1281)
+...+.++..+|+||||-.-.. .|||++..+..--++.++..+|+.+........+.+...+..-.++.++|.++++|
T Consensus 432 f~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRm 511 (791)
T KOG1002|consen 432 FNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRM 511 (791)
T ss_pred HHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHH
Confidence 5678999999999999954333 48999999888889999999999998877777777777777788999999999999
Q ss_pred HHHcCCCcCchhhH----------------------H--------H---Hh-----hhhcCCCccc--------------
Q psy7773 132 RKLCNHPFMFQNIE----------------------E--------K---YC-----QHIGQNNTVV-------------- 159 (1281)
Q Consensus 132 r~~~~hP~l~~~~~----------------------~--------~---~~-----~~~~~~~~~~-------------- 159 (1281)
||++.||+|+.... + . .| ........+.
T Consensus 512 RQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse 591 (791)
T KOG1002|consen 512 RQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSE 591 (791)
T ss_pred HHhccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccc
Confidence 99999998763210 0 0 00 0011111000
Q ss_pred -------------------cCCcccccCcHHHHHHHHHHHhhhCC--CeEEEEeccHHHHHHHHHHHHhCCCcEEEecCC
Q psy7773 160 -------------------SGPDIYRTSGKFELLDRILPKFKETK--HRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGT 218 (1281)
Q Consensus 160 -------------------~~~~~~~~s~K~~~L~~ll~~~~~~~--~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~ 218 (1281)
..-+.|..|.|+++|.+-|.-+.+.. -|.||||||+++++.|.-.|...|+.|+.+.|+
T Consensus 592 ~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~Gs 671 (791)
T KOG1002|consen 592 PALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGS 671 (791)
T ss_pred hhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccC
Confidence 01113678999999999888776643 689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccc
Q psy7773 219 TKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNS 298 (1281)
Q Consensus 219 ~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~T 298 (1281)
|++..|...|+.|.+ +.+|+|||+|.+|||+.|||+.|++|+++||||||+...||.+|+|||||.++|.|.+|+.++|
T Consensus 672 Ms~~ardatik~F~n-d~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEns 750 (791)
T KOG1002|consen 672 MSPAARDATIKYFKN-DIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENS 750 (791)
T ss_pred CChHHHHHHHHHhcc-CCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhcc
Confidence 999999999999987 5679999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhccccchhhhhccchh
Q psy7773 299 VEERILAAARYKLNMDEKEYHRNNTA 324 (1281)
Q Consensus 299 iee~i~~~~~~K~~l~~~~~~~~~~~ 324 (1281)
||++|.++|..|.++++..++....+
T Consensus 751 iE~kIieLQeKKa~mihaTi~qde~A 776 (791)
T KOG1002|consen 751 IEEKIIELQEKKANMIHATIGQDEEA 776 (791)
T ss_pred HHHHHHHHHHHHhhhhhhhcCCcHHH
Confidence 99999999999999887766665543
No 34
>KOG4439|consensus
Probab=100.00 E-value=3.8e-38 Score=360.20 Aligned_cols=309 Identities=26% Similarity=0.378 Sum_probs=252.1
Q ss_pred CcccCCHHHHHHHHHHhCCCCCCCHHHHHHHhcccccccCccccccHHHHHHHHHHHHHHhhhhHHhhchhhhhh-----
Q psy7773 1 TPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVES----- 75 (1281)
Q Consensus 1 TPiqN~~~eL~sll~fL~p~~l~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~dv~~----- 75 (1281)
|||||++-|+|+|+.||+-.+|++...|+.++..+...+ ..+|.-+..++||||||.....
T Consensus 500 TPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g--------------~~rlnll~K~LmLRRTKdQl~a~~klv 565 (901)
T KOG4439|consen 500 TPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKGG--------------ANRLNLLTKSLMLRRTKDQLQANGKLV 565 (901)
T ss_pred CccccchhHHHHHHHHhcCCCcchHHHHHHhccCccccc--------------hhhhhhhhhhHHhhhhHHhhccccccc
Confidence 899999999999999999999999999999987653222 2468888999999999987655
Q ss_pred cCCCceEEEEEeCCCHHHHHHHHHHHHhhhhhccc------------c--c----------------------cCCCCCC
Q psy7773 76 QLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDG------------S--E----------------------KGKTGEG 119 (1281)
Q Consensus 76 ~LP~k~~~~v~v~ls~~Q~~~Y~~l~~~~~~~~~~------------~--~----------------------~~~~~~~ 119 (1281)
.||.+...++.++|+..+...|+.+.+....+... . . ..+....
T Consensus 566 ~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~ 645 (901)
T KOG4439|consen 566 NLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFE 645 (901)
T ss_pred cCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccccCccccchhccccccccccccccchhhhcCCchh
Confidence 79999999999999999999999986644332211 0 0 0001112
Q ss_pred chHHHHHHHHHHHHHcCCCcCchhhHHHH--------------------hhh-----hcCCCcc---------ccCCccc
Q psy7773 120 GARALKNTIVQLRKLCNHPFMFQNIEEKY--------------------CQH-----IGQNNTV---------VSGPDIY 165 (1281)
Q Consensus 120 ~~~~~~~~l~~Lr~~~~hP~l~~~~~~~~--------------------~~~-----~~~~~~~---------~~~~~~~ 165 (1281)
....++.++++|||+|+||.+.....+.. ... ....... .......
T Consensus 646 ~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~ 725 (901)
T KOG4439|consen 646 IMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLEEDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPD 725 (901)
T ss_pred hHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhhhhhHHHhhhhcccccccccccccccccchhhhcccc
Confidence 23457889999999999995542221100 000 0000000 0011234
Q ss_pred ccCcHHHHHHHHHHHh-hhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEe
Q psy7773 166 RTSGKFELLDRILPKF-KETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLS 244 (1281)
Q Consensus 166 ~~s~K~~~L~~ll~~~-~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~s 244 (1281)
..|+|+..+...+..+ ....+|+||.|||+.++.++...+...|..|..++|.+...+|+.+++.||...++.+|+|+|
T Consensus 726 r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlS 805 (901)
T KOG4439|consen 726 RPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLS 805 (901)
T ss_pred cchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEE
Confidence 5799999999999887 567899999999999999999999999999999999999999999999999988889999999
Q ss_pred ccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhccccchhhhhccch
Q psy7773 245 TRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDEKEYHRNNT 323 (1281)
Q Consensus 245 t~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~~l~~~~~~~~~~ 323 (1281)
..+||.||||++|+|+|++|++|||+.+.||.+||+|+||+++|+||||++.||+|++|...|..|..++..++.....
T Consensus 806 LtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~t 884 (901)
T KOG4439|consen 806 LTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSAT 884 (901)
T ss_pred EccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888875444
No 35
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=3.7e-34 Score=370.42 Aligned_cols=438 Identities=20% Similarity=0.233 Sum_probs=283.8
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHCCC--
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWAPS-- 620 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~p~-- 620 (1281)
.++|+||...+..++. .++|++++||+|||++++.++..++. ...+++|||||+ .++.||...+.++++.
T Consensus 14 ~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 14 IEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 3799999998887764 28999999999999999988887763 344799999998 5668999999888632
Q ss_pred CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCccccccchHHHHHHHhh---hcc
Q psy7773 621 ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTF---YNS 695 (1281)
Q Consensus 621 ~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~---~~~ 695 (1281)
..+..+.|......... . ....+|+|+|++.+..+. ..+....|++|||||||++.+..+..+ .+..+ .+.
T Consensus 87 ~~v~~~~g~~~~~~r~~--~-~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~-i~~~~~~~~~~ 162 (773)
T PRK13766 87 EKIVVFTGEVSPEKRAE--L-WEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVY-IAERYHEDAKN 162 (773)
T ss_pred ceEEEEeCCCCHHHHHH--H-HhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHH-HHHHHHhcCCC
Confidence 47777877543322111 1 135689999999987653 334445799999999999987654322 22222 235
Q ss_pred CcEEEeecCCCCCChhHHHHHHhhhcCCCCCChh----HHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHH
Q psy7773 696 SHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCS----TFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRR 771 (1281)
Q Consensus 696 ~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~----~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR 771 (1281)
+++++|||||.++ ...+..+++-|....+.... .+...+. +.......+.+.. .+..++..|.+++.++
T Consensus 163 ~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~-~~~v~~~~v~l~~-----~~~~i~~~l~~~~~~~ 235 (773)
T PRK13766 163 PLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVH-KVKIEWVRVELPE-----ELKEIRDLLNEALKDR 235 (773)
T ss_pred CEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhc-cceeEEEEeCCcH-----HHHHHHHHHHHHHHHH
Confidence 6689999999875 45566666655433322221 1222222 1111111222332 2456778888888877
Q ss_pred hHHHHhhc-CCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhh--hH
Q psy7773 772 LKKEVESQ-LPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQN--IE 848 (1281)
Q Consensus 772 ~k~~v~~~-lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~--~~ 848 (1281)
.+...... .++....+....+...+..++..+..... .......+...++.++.+..... .++ ..
T Consensus 236 l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~~~l~~~~~~l~-~~~~~~~ 303 (773)
T PRK13766 236 LKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDS-----------EGYEAISILAEAMKLRHAVELLE-TQGVEAL 303 (773)
T ss_pred HHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCch-----------HHHHHHHHHHHHHHHHHHHHHHH-HhCHHHH
Confidence 77654322 22222122223333344444433322100 00000111111122221110000 000 00
Q ss_pred HHHHhhhcCCCc--------------------cccCCccccccchHHHHHHHhhhhh--hcCCeEEEEechHHHHHHHHH
Q psy7773 849 EKYCQHIGQNNT--------------------VVSGPDIYRTSGKFELLDRILPKFK--ETKHRVLMFCQMTQLMTILED 906 (1281)
Q Consensus 849 ~~~~~~~~~~~~--------------------~~~~~~~~~~s~K~~~L~~lL~~~~--~~~~kvLIFsq~~~~ld~L~~ 906 (1281)
..++..+..... ......+...++|+..|.++|.... ..+.||||||++..+++.|..
T Consensus 304 ~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~ 383 (773)
T PRK13766 304 RRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVD 383 (773)
T ss_pred HHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHH
Confidence 000000000000 0000112345799999999998876 578899999999999999999
Q ss_pred HHHHCCCcEEEEeCC--------CChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhH
Q psy7773 907 YFIWRDFSYLRLDGT--------TKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQA 978 (1281)
Q Consensus 907 ~L~~~g~~~~~l~G~--------~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa 978 (1281)
+|...|+++..++|. ++..+|..++.+|+.+... +|+||.++++|+|++.|++||+||++|||..++|+
T Consensus 384 ~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~---vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR 460 (773)
T PRK13766 384 LLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFN---VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQR 460 (773)
T ss_pred HHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCC---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHH
Confidence 999999999999997 8888999999999986544 58999999999999999999999999999999998
Q ss_pred hHhHHhhCCCCceEEEEEEeCCCHHHHHHHHHHHHHHHH
Q psy7773 979 QDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMD 1017 (1281)
Q Consensus 979 ~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~~~~K~~l~ 1017 (1281)
.||++|.|+ +.||.|++.+|+||.+|.....|...+
T Consensus 461 ~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 461 KGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred hcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 888888775 789999999999999998776665544
No 36
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=3e-35 Score=389.50 Aligned_cols=317 Identities=39% Similarity=0.637 Sum_probs=261.6
Q ss_pred CcccCCHHHHHHHHH-HhCCCCCC-CHHHHHHHhcccccccCccccccHHHHHHHHHHHHHHhhhhHHhhchhh--hhhc
Q psy7773 1 TPLQNKLPELWALLN-FLLPSIFK-SCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKE--VESQ 76 (1281)
Q Consensus 1 TPiqN~~~eL~sll~-fL~p~~l~-~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~d--v~~~ 76 (1281)
||+||++.|||++++ |+.|++++ +...|..+|..+......... .......+.+|+.++.||++||+|.+ |...
T Consensus 509 TPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~ 586 (866)
T COG0553 509 TPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGP--LEARELGIELLRKLLSPFILRRTKEDVEVLKE 586 (866)
T ss_pred ChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccc--hhhHHHHHHHHHHHHHHHhhcccccchhHHHh
Confidence 899999999999999 99999999 568999999998765554322 22333445669999999999999999 8889
Q ss_pred CCCceEEEEEeCCCHHHHHHHHHHHH---hhhhhccccccCCCC--CC--chHHHHHHHHHHHHHcCCCcCchhh-HHHH
Q psy7773 77 LPEKVEYIIKCDMSGLQKLLYQHLHN---RGILLTDGSEKGKTG--EG--GARALKNTIVQLRKLCNHPFMFQNI-EEKY 148 (1281)
Q Consensus 77 LP~k~~~~v~v~ls~~Q~~~Y~~l~~---~~~~~~~~~~~~~~~--~~--~~~~~~~~l~~Lr~~~~hP~l~~~~-~~~~ 148 (1281)
||++.+.+++|+|++.|..+|..+.. .....+......... .. ....+++.+++||++|+||.++... ....
T Consensus 587 Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~ 666 (866)
T COG0553 587 LPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPALVDEGLEATF 666 (866)
T ss_pred CChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHhccCcccccccccccc
Confidence 99999999999999999999999887 333332221111100 00 3567899999999999999988764 2211
Q ss_pred hhhhcC----CCccccCCcccccC-cHHHHHHHHH-HHhhhCCC--eEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCC
Q psy7773 149 CQHIGQ----NNTVVSGPDIYRTS-GKFELLDRIL-PKFKETKH--RVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTK 220 (1281)
Q Consensus 149 ~~~~~~----~~~~~~~~~~~~~s-~K~~~L~~ll-~~~~~~~~--kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~ 220 (1281)
...... ..........+..| +|+..+.++| ..+...|. ++|||+||+.++++|..+|...++.+++++|+++
T Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~ 746 (866)
T COG0553 667 DRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTP 746 (866)
T ss_pred chhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCC
Confidence 111100 11112223345667 9999999999 78888898 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchH
Q psy7773 221 SEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVE 300 (1281)
Q Consensus 221 ~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tie 300 (1281)
...|+.+++.|+++ ..+.||++|+++||.||||+.|++||+||++|||+.+.||++|+||+||+++|.||+++++||+|
T Consensus 747 ~~~r~~~i~~f~~~-~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiE 825 (866)
T COG0553 747 AKRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIE 825 (866)
T ss_pred hhhHHHHHHHhhcC-CCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHH
Confidence 99999999999986 55789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccchhhhhc
Q psy7773 301 ERILAAARYKLNMDEKEYHR 320 (1281)
Q Consensus 301 e~i~~~~~~K~~l~~~~~~~ 320 (1281)
|+|+..+..|..+...+...
T Consensus 826 e~i~~~~~~K~~l~~~~~~~ 845 (866)
T COG0553 826 EKILELQEKKQELLDSLIDA 845 (866)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 99999999998886666553
No 37
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.8e-31 Score=299.54 Aligned_cols=444 Identities=19% Similarity=0.187 Sum_probs=280.7
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc-cHHHHHHHHHHHC--CC
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS-TLSNWVLEFEKWA--PS 620 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s-~l~~W~~E~~~~~--p~ 620 (1281)
.+.|.||...+.-.+. .|++++.+||||||++|+.++.+.+...+ |.+|+++|+. ++.|-..-+.+.+ |.
T Consensus 14 ie~R~YQ~~i~a~al~-----~NtLvvlPTGLGKT~IA~~V~~~~l~~~~--~kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 14 IEPRLYQLNIAAKALF-----KNTLVVLPTGLGKTFIAAMVIANRLRWFG--GKVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred ccHHHHHHHHHHHHhh-----cCeEEEecCCccHHHHHHHHHHHHHHhcC--CeEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 4789999998877664 38999999999999999999987664333 3899999975 4577777777776 55
Q ss_pred CcEEEEeCCHHH--HHHHHhhhccCCccEEEechHHHhhc--ccccccCceeEEEEeCCccccccchHHH--HHHHhhhc
Q psy7773 621 ANVVAYKGSPLA--RRALQGRMKNSKFNVLLTTYEFIIKD--KSVLSKIQWKCMIIDEGHRMKNHHCKLT--QTLNTFYN 694 (1281)
Q Consensus 621 ~~~~~~~g~~~~--r~~~~~~~~~~~~~vvItTye~l~~~--~~~l~~~~w~~vIvDEaHr~kn~~s~~~--~~l~~~~~ 694 (1281)
..++.+.|.-.. |.... .+-.|+++|++.+.+| ...+..-.+.+||+|||||.-++.+-.+ +......+
T Consensus 87 ~~i~~ltGev~p~~R~~~w-----~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k 161 (542)
T COG1111 87 DEIAALTGEVRPEEREELW-----AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAK 161 (542)
T ss_pred hheeeecCCCChHHHHHHH-----hhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhcc
Confidence 678888886333 33222 3468999999999887 3456666899999999999987664322 22222224
Q ss_pred cCcEEEeecCCCCCChhHHHHHHhhhcCCCCC--C--hhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHH
Q psy7773 695 SSHRVLLTGTPLQNKLPELWALLNFLLPSIFK--S--CSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLR 770 (1281)
Q Consensus 695 ~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~--~--~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lR 770 (1281)
.++.|+|||||= ++...+...++-|..+... + ..+.. .|.......+-++.+..+ ...+...|..+++|.+
T Consensus 162 ~~~ilgLTASPG-s~~ekI~eV~~nLgIe~vevrTE~d~DV~-~Yv~~~kve~ikV~lp~e-~~~ir~~l~~~l~~~L-- 236 (542)
T COG1111 162 NPLILGLTASPG-SDLEKIQEVVENLGIEKVEVRTEEDPDVR-PYVKKIKVEWIKVDLPEE-IKEIRDLLRDALKPRL-- 236 (542)
T ss_pred CceEEEEecCCC-CCHHHHHHHHHhCCcceEEEecCCCccHH-HhhccceeEEEeccCcHH-HHHHHHHHHHHHHHHH--
Confidence 567899999994 5566666666655444321 1 11111 122222222333344332 2234445555555543
Q ss_pred HhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcC----C---c--
Q psy7773 771 RLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCN----H---P-- 841 (1281)
Q Consensus 771 R~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~----h---p-- 841 (1281)
+.-- ..-.....++ -.++.+......+.... ...........+....++.+.++.. | |
T Consensus 237 --k~L~-----~~g~~~~~~~--~~~kdl~~~~~~~~~~a----~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~ 303 (542)
T COG1111 237 --KPLK-----ELGVIESSSP--VSKKDLLELRQIRLIMA----KNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFY 303 (542)
T ss_pred --HHHH-----HcCceeccCc--ccHhHHHHHHHHHHHhc----cCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH
Confidence 2211 1111111122 12333333321100000 0000000111111222222211110 0 0
Q ss_pred -cchhhhHHHHHhhhcCCCccccC-------------CccccccchHHHHHHHhhhhh--hcCCeEEEEechHHHHHHHH
Q psy7773 842 -FMFQNIEEKYCQHIGQNNTVVSG-------------PDIYRTSGKFELLDRILPKFK--ETKHRVLMFCQMTQLMTILE 905 (1281)
Q Consensus 842 -~l~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~s~K~~~L~~lL~~~~--~~~~kvLIFsq~~~~ld~L~ 905 (1281)
|+-...+............+... ....-..|||+.+.++|.... ..+.|||||++++.+++.|.
T Consensus 304 ~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~ 383 (542)
T COG1111 304 QYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIV 383 (542)
T ss_pred HHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHH
Confidence 10000000000000000000000 112234789999999999877 56789999999999999999
Q ss_pred HHHHHCCCcEE-EEeC--------CCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhh
Q psy7773 906 DYFIWRDFSYL-RLDG--------TTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDL 976 (1281)
Q Consensus 906 ~~L~~~g~~~~-~l~G--------~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~ 976 (1281)
.+|...|.... ++-| +|++.++..+|++|++|+.+ +|+||.+|.+|||++.+|.||+||+.-+|...+
T Consensus 384 ~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~n---VLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~I 460 (542)
T COG1111 384 NFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYN---VLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSI 460 (542)
T ss_pred HHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCce---EEEEcccccccCCCCcccEEEEecCCcHHHHHH
Confidence 99999988875 6666 49999999999999997655 599999999999999999999999999999999
Q ss_pred hHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy7773 977 QAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDEKVIQA 1023 (1281)
Q Consensus 977 Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~~~~K~~l~~~vi~~ 1023 (1281)
||.||++| ++.-+||-|++.||-|+.-|.....|..-....+..
T Consensus 461 QR~GRTGR---~r~Grv~vLvt~gtrdeayy~~s~rke~~m~e~i~~ 504 (542)
T COG1111 461 QRKGRTGR---KRKGRVVVLVTEGTRDEAYYYSSRRKEQKMIESIRG 504 (542)
T ss_pred HhhCcccc---CCCCeEEEEEecCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988 477899999999999999999988887776666654
No 38
>KOG1016|consensus
Probab=100.00 E-value=3.6e-33 Score=319.22 Aligned_cols=314 Identities=32% Similarity=0.500 Sum_probs=246.2
Q ss_pred cccCCHHHHHHHHHHhCCCCCCCHHHHHHHhcccccccCccccccHHHHHHH---HHHHHHHhhhhHHhhchhhhhhcCC
Q psy7773 2 PLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILI---IRRLHKVLRPFLLRRLKKEVESQLP 78 (1281)
Q Consensus 2 PiqN~~~eL~sll~fL~p~~l~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~---~~~L~~~l~~~~lRR~k~dv~~~LP 78 (1281)
|+||||.|+|+|++|++|.+||+..+|.+.|.+|+. .|+.+..+......+ ..-|+.+|..|+-||+...+...||
T Consensus 472 PLQNNLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~-NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP 550 (1387)
T KOG1016|consen 472 PLQNNLLEYWCMVDFVRPKYLGTRKEFINMFERPIK-NGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILP 550 (1387)
T ss_pred ccccchHHHhhhheeccccccchHHHHHHHhhcccc-CCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcc
Confidence 999999999999999999999999999999999985 455555555443333 4469999999999999999988999
Q ss_pred CceEEEEEeCCCHHHHHHHHHHHHhhhhhccccccCCCCCCchHHHHHHHHHHHHHcCCCcCchhhHHHH---------h
Q psy7773 79 EKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKY---------C 149 (1281)
Q Consensus 79 ~k~~~~v~v~ls~~Q~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~~~~hP~l~~~~~~~~---------~ 149 (1281)
.+.++++-|.||..||.+|+.+.-.....+...... ..+-+.++.-..+++|||..+....... .
T Consensus 551 ~k~EyViLvr~s~iQR~LY~~Fm~d~~r~~~~~~~~------~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~v 624 (1387)
T KOG1016|consen 551 EKKEYVILVRKSQIQRQLYRNFMLDAKREIAANNDA------VFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRV 624 (1387)
T ss_pred cccceEEEEeHHHHHHHHHHHHHHHHHHhhcccccc------ccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhH
Confidence 999999999999999999999875444322221111 1123445566788889997654332210 0
Q ss_pred hhh---------cCCCccccC--------------------------------Cc------------------ccccCcH
Q psy7773 150 QHI---------GQNNTVVSG--------------------------------PD------------------IYRTSGK 170 (1281)
Q Consensus 150 ~~~---------~~~~~~~~~--------------------------------~~------------------~~~~s~K 170 (1281)
... ........+ +. +...++|
T Consensus 625 ee~~~ag~~~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk 704 (1387)
T KOG1016|consen 625 EEMKFAGLQQQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPK 704 (1387)
T ss_pred HHHhhhcccccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCc
Confidence 000 000000000 00 1122455
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCC------------------CcEEEecCCCCHHHHHHHHHHhc
Q psy7773 171 FELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRD------------------FSYLRLDGTTKSEDRGELLRKFN 232 (1281)
Q Consensus 171 ~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g------------------~~~~~~~g~~~~~~R~~~i~~F~ 232 (1281)
+..+..++..-...|.|+|||||....++.|+..|.... ..|.+++|.++..+|+++|++||
T Consensus 705 ~V~~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN 784 (1387)
T KOG1016|consen 705 IVISLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFN 784 (1387)
T ss_pred eEEEEeeeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhcc
Confidence 555555555555678999999999999999999997652 35889999999999999999999
Q ss_pred CCCCCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhccc
Q psy7773 233 EPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLN 312 (1281)
Q Consensus 233 ~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~~ 312 (1281)
+..+-...|++||++|..||||-.|+.+|+||..|||....||+.|++|+||+++|+|||||+..|+|-.||.+|..|++
T Consensus 785 ~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqG 864 (1387)
T KOG1016|consen 785 SEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQG 864 (1387)
T ss_pred CCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhcc
Confidence 87665569999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhccc
Q psy7773 313 MDEKEYHRNN 322 (1281)
Q Consensus 313 l~~~~~~~~~ 322 (1281)
+..+++..-+
T Consensus 865 msdRvVDd~n 874 (1387)
T KOG1016|consen 865 MSDRVVDDAN 874 (1387)
T ss_pred chhhhhcccC
Confidence 9888776654
No 39
>KOG0298|consensus
Probab=99.98 E-value=7.5e-32 Score=327.65 Aligned_cols=265 Identities=23% Similarity=0.372 Sum_probs=202.2
Q ss_pred cCCCCeEEecCCCCCHHHHHHHHHHHHHH---------------hcCCCCCEEEEeCCccHHHHHHHHHHHCCCC-cEEE
Q psy7773 562 NNNLNGILADEMGLGKTVQTIALLTYLME---------------KKKNLGPYLVIVPLSTLSNWVLEFEKWAPSA-NVVA 625 (1281)
Q Consensus 562 ~~~~~gILademGlGKTi~ai~ll~~l~~---------------~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~-~~~~ 625 (1281)
..+..+++||+||+|||...+++...... .....|.+|||||.+++.||-.||.+++++. ++..
T Consensus 372 ~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~ 451 (1394)
T KOG0298|consen 372 KHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLL 451 (1394)
T ss_pred cCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEE
Confidence 34455799999999999998876543311 1122578999999999999999999999877 9999
Q ss_pred EeCCHHHHHHHHhhhccCCccEEEechHHHhhc----------------------ccccccCceeEEEEeCCccccccch
Q psy7773 626 YKGSPLARRALQGRMKNSKFNVLLTTYEFIIKD----------------------KSVLSKIQWKCMIIDEGHRMKNHHC 683 (1281)
Q Consensus 626 ~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~----------------------~~~l~~~~w~~vIvDEaHr~kn~~s 683 (1281)
|.|-...... .......+|||+|||+.|... .+.|-.+.|..||||||+.+-..+|
T Consensus 452 Y~Girk~~~~--~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWL--SPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSSS 529 (1394)
T ss_pred Eechhhhccc--CchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchHH
Confidence 9996443211 123356799999999999754 3456667999999999999999888
Q ss_pred HHHHHHHhhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHh
Q psy7773 684 KLTQTLNTFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKV 763 (1281)
Q Consensus 684 ~~~~~l~~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 763 (1281)
..++.+..+ ++.++|+.||||+|+ +.+|+.||+||.-..|.....|-+....++... .....++++
T Consensus 530 ~~a~M~~rL-~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~r------------a~~~~~~dl 595 (1394)
T KOG0298|consen 530 AAAEMVRRL-HAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLR------------AKCEPLLDL 595 (1394)
T ss_pred HHHHHHHHh-hhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHH------------hhhhhHHHH
Confidence 888888876 899999999999999 999999999999989999999977766544221 123357888
Q ss_pred hhHHHHHHhHHHHhh--cCCCceEEEEEcCCCHHHHHHHHHHHh----ccc---------ccccCCccCCCCCCchHHHH
Q psy7773 764 LRPFLLRRLKKEVES--QLPEKVEYIIKCDMSGLQKLLYQHLHN----RGI---------LLTDGSEKGKTGEGGARALK 828 (1281)
Q Consensus 764 l~~~~lRR~k~~v~~--~lP~k~~~~v~~~ls~~q~~lY~~l~~----~~~---------~~~~~~~~~~~~~~~~~~~~ 828 (1281)
+...+.|+.+..|.. .+|+..+.+.+..+++.+..+|+...- ... .+...+............+.
T Consensus 596 ~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~i~ 675 (1394)
T KOG0298|consen 596 FKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAIIL 675 (1394)
T ss_pred HHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHHHH
Confidence 999999999999876 689998888899999988888865321 000 01111111222334456788
Q ss_pred HHHHHHHHhcCCcc
Q psy7773 829 NTIVQLRKLCNHPF 842 (1281)
Q Consensus 829 ~~l~~Lrk~~~hp~ 842 (1281)
+.+.+||++|+||.
T Consensus 676 ~~l~rLRq~Cchpl 689 (1394)
T KOG0298|consen 676 KWLLRLRQACCHPL 689 (1394)
T ss_pred HHHHHHHHhhcccc
Confidence 99999999999994
No 40
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.97 E-value=7.4e-31 Score=330.91 Aligned_cols=330 Identities=19% Similarity=0.222 Sum_probs=232.3
Q ss_pred CcccCCHHHHHHHHHHhCCCCCCCHHHHHHHhccccc--------ccCcccccc--------------------------
Q psy7773 1 TPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFA--------TTGEKVELN-------------------------- 46 (1281)
Q Consensus 1 TPiqN~~~eL~sll~fL~p~~l~~~~~F~~~~~~~~~--------~~~~~~~~~-------------------------- 46 (1281)
||+||++.|+|++|+||+|+.|+++..|....+.... ..+......
T Consensus 314 TP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~ 393 (956)
T PRK04914 314 TPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQAANSDSE 393 (956)
T ss_pred CcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhhhccccc
Confidence 9999999999999999999999999999875543110 001100000
Q ss_pred --HHHHHHHHHHHHH--HhhhhHHhhchhhhhhcCCCceEEEEEeCCCHHHHHHHHHHHHhhhhhccccccCCCCCCchH
Q psy7773 47 --EEETILIIRRLHK--VLRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGAR 122 (1281)
Q Consensus 47 --~~~~~~~~~~L~~--~l~~~~lRR~k~dv~~~LP~k~~~~v~v~ls~~Q~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~ 122 (1281)
.......+..|.. -..++|+|+++.+|. .+|.+....+.++|++..+..+...
T Consensus 394 ~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~y~~~~~~~---------------------- 450 (956)
T PRK04914 394 EAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQYQTAIKVS---------------------- 450 (956)
T ss_pred ccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHHHHHHHHHh----------------------
Confidence 0000111111111 123678999999987 5999999999999977533333210
Q ss_pred HHHHHHHHHHHHcCCCcCchhhHHHHhhhhcCCCccccCCcccccCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHH
Q psy7773 123 ALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILE 202 (1281)
Q Consensus 123 ~~~~~l~~Lr~~~~hP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~ 202 (1281)
....++. +.+|..... ... .....+..++|+.+|..+|... .+.|+||||++..++..|.
T Consensus 451 ----~~~~~~~-~l~pe~~~~-------~~~------~~~~~~~~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~ 510 (956)
T PRK04914 451 ----LEARARD-MLYPEQIYQ-------EFE------DNATWWNFDPRVEWLIDFLKSH--RSEKVLVICAKAATALQLE 510 (956)
T ss_pred ----HHHHHHh-hcCHHHHHH-------HHh------hhhhccccCHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHH
Confidence 0011121 222311000 000 0112345679999999999865 3789999999999999999
Q ss_pred HHH-HhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhh
Q psy7773 203 DYF-IWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHR 281 (1281)
Q Consensus 203 ~~l-~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R 281 (1281)
..| ...|++++.|||+++..+|.++++.|+++++.++| |+||.+||+|+||++|++||+||+||||..++|||||+||
T Consensus 511 ~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~V-LIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~R 589 (956)
T PRK04914 511 QALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQV-LLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDR 589 (956)
T ss_pred HHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccE-EEechhhccCCCcccccEEEEecCCCCHHHHHHHhccccc
Confidence 999 56799999999999999999999999986545656 5677999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEEEeccchHHHHHHHHhhccccchhhhhccchhhhhhhhHHHHhhhhhhh-HHHhhhHHHHHHHHHHHHH
Q psy7773 282 IGQKNEVRVLRLITVNSVEERILAAARYKLNMDEKEYHRNNTARTQKLNKAIINYHINAE-KEQKKEQERIEKERMRRLM 360 (1281)
Q Consensus 282 ~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~~l~~~~~~~~~~~k~~kl~k~v~~~~~~~e-kEe~k~~er~ekerl~~L~ 360 (1281)
+||+++|.||+++..+|+++.|+.++..|.+++...+........ .+...+........ .+.-.+.-...+...++|+
T Consensus 590 iGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~~v~~-~~~~~l~~~l~~~~~~~~~~~li~~~~~~~~~l~ 668 (956)
T PRK04914 590 IGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGRALYD-EFGDELIPYLASPDDTDGLDELIAETREQHEALK 668 (956)
T ss_pred CCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHHHHHH-HHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998887776654332 23333333322221 1111222223445566677
Q ss_pred hhCHHHHHHHHhhHh
Q psy7773 361 AEDEEGYRKLIDQKK 375 (1281)
Q Consensus 361 ~~dee~y~kll~~~k 375 (1281)
+.-+.|+++|++...
T Consensus 669 ~~le~gRdrLlE~ns 683 (956)
T PRK04914 669 AQLEQGRDRLLELNS 683 (956)
T ss_pred HHHHHHHHHHHHhhc
Confidence 777777777776643
No 41
>KOG1000|consensus
Probab=99.97 E-value=2.6e-30 Score=285.46 Aligned_cols=269 Identities=23% Similarity=0.305 Sum_probs=207.0
Q ss_pred CcccCCHHHHHHHHHHhCCCCCCCHHHHHHHhcccccccCccccccHHHHHHHHHHHHHHhhh-hHHhhchhhhhhcCCC
Q psy7773 1 TPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRP-FLLRRLKKEVESQLPE 79 (1281)
Q Consensus 1 TPiqN~~~eL~sll~fL~p~~l~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~-~~lRR~k~dv~~~LP~ 79 (1281)
||.-.++.|||.++..++|.+|.++.+|..+||.-..-. ......+-.++.+|+-+|.. .|+||+|.+|+.+|||
T Consensus 347 TPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr----~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPp 422 (689)
T KOG1000|consen 347 TPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVR----FCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPP 422 (689)
T ss_pred CcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccc----eeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 899999999999999999999999999999998642211 11111111235667777754 5899999999999999
Q ss_pred ceEEEEEeCCCHHHHHHHHHHHHhhhhhccccccCCCCCCchHHHHHHHHHHHHHcCCCcCchhhHHHHhhhhcCCCccc
Q psy7773 80 KVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNNTVV 159 (1281)
Q Consensus 80 k~~~~v~v~ls~~Q~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~~~~hP~l~~~~~~~~~~~~~~~~~~~ 159 (1281)
|...+|++ .++.+-+..+.+...+.. ....... ...-...++..++
T Consensus 423 Krr~Vv~~-~~gr~da~~~~lv~~a~~----~t~~~~~---e~~~~~l~l~y~~-------------------------- 468 (689)
T KOG1000|consen 423 KRREVVYV-SGGRIDARMDDLVKAAAD----YTKVNSM---ERKHESLLLFYSL-------------------------- 468 (689)
T ss_pred cceEEEEE-cCCccchHHHHHHHHhhh----cchhhhh---hhhhHHHHHHHHH--------------------------
Confidence 95555544 444444444444332111 0000000 0000011111111
Q ss_pred cCCcccccCcHHHHHHHHHHH----hhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCC
Q psy7773 160 SGPDIYRTSGKFELLDRILPK----FKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPE 235 (1281)
Q Consensus 160 ~~~~~~~~s~K~~~L~~ll~~----~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~ 235 (1281)
..-.|+..+.+.|.. ..+.+.|+|||+++..+++.|+..+..+++++.+|||+++...|+.++..|+.+
T Consensus 469 ------tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~s- 541 (689)
T KOG1000|consen 469 ------TGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTS- 541 (689)
T ss_pred ------hcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccc-
Confidence 113577777777766 446789999999999999999999999999999999999999999999999984
Q ss_pred CCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhccccc
Q psy7773 236 SKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMD 314 (1281)
Q Consensus 236 ~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~~l~ 314 (1281)
..++|-|+|..|||.||+|+.|+.|+|.+++|||+...||.+|+||+||+..|.||+|+++||+|+.+|..+..|.+.-
T Consensus 542 eev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl 620 (689)
T KOG1000|consen 542 EEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVL 620 (689)
T ss_pred cceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999999999999999999999999999999999997653
No 42
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.97 E-value=1.2e-28 Score=294.63 Aligned_cols=365 Identities=19% Similarity=0.253 Sum_probs=266.2
Q ss_pred cccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCC
Q psy7773 541 MVNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAP 619 (1281)
Q Consensus 541 ~~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p 619 (1281)
....+|||||.+++.-++..+..+..|++..+||+|||+.++.++..+. .++|||||...+ .||...+.++++
T Consensus 32 ~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~------~~~Lvlv~~~~L~~Qw~~~~~~~~~ 105 (442)
T COG1061 32 AFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK------RSTLVLVPTKELLDQWAEALKKFLL 105 (442)
T ss_pred ccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc------CCEEEEECcHHHHHHHHHHHHHhcC
Confidence 3456899999999998887665588899999999999999999988764 349999997665 999988888875
Q ss_pred CC-cEEEEeCCHHHHHHHHhhhccCC-ccEEEechHHHhhcc--cccccCceeEEEEeCCccccccchHHHHHHHhhhcc
Q psy7773 620 SA-NVVAYKGSPLARRALQGRMKNSK-FNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNS 695 (1281)
Q Consensus 620 ~~-~~~~~~g~~~~r~~~~~~~~~~~-~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~ 695 (1281)
.. .+-.+.|.... .. ..|+|+||+++.+.. ..+..-.|++||+||+||+...... .+...+..
T Consensus 106 ~~~~~g~~~~~~~~----------~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~---~~~~~~~~ 172 (442)
T COG1061 106 LNDEIGIYGGGEKE----------LEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYR---RILELLSA 172 (442)
T ss_pred CccccceecCceec----------cCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHH---HHHHhhhc
Confidence 43 34445553211 11 479999999998863 4444448999999999999876643 33333456
Q ss_pred Cc-EEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHH
Q psy7773 696 SH-RVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKK 774 (1281)
Q Consensus 696 ~~-rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~ 774 (1281)
.+ +|+|||||...+...+..+..++.|-.+.-. .+.
T Consensus 173 ~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~-------------------------------------------~~~ 209 (442)
T COG1061 173 AYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVS-------------------------------------------LKE 209 (442)
T ss_pred ccceeeeccCceeecCCchhHHHHhcCCeEeecC-------------------------------------------HHH
Confidence 66 9999999985553334333333332222100 011
Q ss_pred HHh-hcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHh
Q psy7773 775 EVE-SQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQ 853 (1281)
Q Consensus 775 ~v~-~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~ 853 (1281)
.+. ..|.+.....+++.++......|............... ..-.....+.
T Consensus 210 li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~----------------- 261 (442)
T COG1061 210 LIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARG-----------TLRAENEARR----------------- 261 (442)
T ss_pred HHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhh-----------hhhHHHHHHH-----------------
Confidence 111 25778888999999999988888765432211110000 0000000000
Q ss_pred hhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHh
Q psy7773 854 HIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRK 933 (1281)
Q Consensus 854 ~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~ 933 (1281)
.......|+..+..++.... .+.+++||+.....+..+...|...|+ +..++|.++..+|..+++.
T Consensus 262 ------------~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~ 327 (442)
T COG1061 262 ------------IAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILER 327 (442)
T ss_pred ------------HhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHH
Confidence 11224567888888887766 788999999999999999999999888 8899999999999999999
Q ss_pred hcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHh-hCCCCc--eEEEEEEeCCCHHHHHHHHH
Q psy7773 934 FNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHR-IGQKNE--VRVLRLITVNSVEERILAAA 1010 (1281)
Q Consensus 934 Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~R-iGQ~k~--V~V~rli~~~tiEe~I~~~~ 1010 (1281)
|..+... +|++++++++|+|++.|+++|+..+.-++..++|++||+.| ...+.. +..|-+++..+.+..+....
T Consensus 328 fr~g~~~---~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 404 (442)
T COG1061 328 FRTGGIK---VLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRR 404 (442)
T ss_pred HHcCCCC---EEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhh
Confidence 9986633 69999999999999999999999999999999999999999 444554 77788888888888777655
Q ss_pred HH
Q psy7773 1011 RY 1012 (1281)
Q Consensus 1011 ~~ 1012 (1281)
..
T Consensus 405 ~~ 406 (442)
T COG1061 405 RL 406 (442)
T ss_pred hh
Confidence 44
No 43
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.97 E-value=2.1e-28 Score=298.81 Aligned_cols=340 Identities=16% Similarity=0.189 Sum_probs=229.7
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHC--C
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWA--P 619 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~--p 619 (1281)
...|+|||.+++.-++. +.+||+..+||+|||++++.++.+++.. ..+++|||||. .++.||..+|.+|. |
T Consensus 112 ~~~~r~~Q~~av~~~l~----~~~~il~apTGsGKT~i~~~l~~~~~~~--~~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLK----NNRRLLNLPTSAGKSLIQYLLSRYYLEN--YEGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred cCCCCHHHHHHHHHHHh----cCceEEEeCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 35899999999986663 5678999999999999988776655533 23489999997 55599999999976 3
Q ss_pred CCcE-EEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcE
Q psy7773 620 SANV-VAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHR 698 (1281)
Q Consensus 620 ~~~~-~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~r 698 (1281)
...+ .++.|... ....+|+|+|++.+.+....+ --.+++|||||||++...+ +...+..+.+++++
T Consensus 186 ~~~~~~i~~g~~~----------~~~~~I~VaT~qsl~~~~~~~-~~~~~~iIvDEaH~~~~~~--~~~il~~~~~~~~~ 252 (501)
T PHA02558 186 REAMHKIYSGTAK----------DTDAPIVVSTWQSAVKQPKEW-FDQFGMVIVDECHLFTGKS--LTSIITKLDNCKFK 252 (501)
T ss_pred ccceeEEecCccc----------CCCCCEEEeeHHHHhhchhhh-ccccCEEEEEchhcccchh--HHHHHHhhhccceE
Confidence 3333 34444321 134789999999997654221 1268999999999997643 34555544357789
Q ss_pred EEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHHhh
Q psy7773 699 VLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVES 778 (1281)
Q Consensus 699 llLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~ 778 (1281)
++|||||...... .+.+..++.|-... . .. ..++. ..
T Consensus 253 lGLTATp~~~~~~-~~~~~~~fG~i~~~-v-~~-----------------------------~~li~-----------~g 289 (501)
T PHA02558 253 FGLTGSLRDGKAN-ILQYVGLFGDIFKP-V-TT-----------------------------SQLME-----------EG 289 (501)
T ss_pred EEEeccCCCcccc-HHHHHHhhCCceEE-e-cH-----------------------------HHHHh-----------CC
Confidence 9999999643321 11122222221100 0 00 00000 00
Q ss_pred cCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhcCC
Q psy7773 779 QLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQN 858 (1281)
Q Consensus 779 ~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~ 858 (1281)
.+.+.....+.+..+......+ ...... .. +..+
T Consensus 290 ~l~~~~~~~v~~~~~~~~~~~~-------------------~~~~~~---~~---~~~l--------------------- 323 (501)
T PHA02558 290 QVTDLKINSIFLRYPDEDRVKL-------------------KGEDYQ---EE---IKYI--------------------- 323 (501)
T ss_pred CcCCceEEEEeccCCHHHhhhh-------------------cccchH---HH---HHHH---------------------
Confidence 1222222333333332211000 000000 00 0111
Q ss_pred CccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCC
Q psy7773 859 NTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPE 938 (1281)
Q Consensus 859 ~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~ 938 (1281)
.....+..++..++..+...++++||||..+..++.|.+.|...|+++..++|+++..+|..+++.|+.+.
T Consensus 324 ---------~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~ 394 (501)
T PHA02558 324 ---------TSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGK 394 (501)
T ss_pred ---------hccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCC
Confidence 11234666777777777777889999999999999999999999999999999999999999999998743
Q ss_pred CCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCc-eEEEEEEeCCC
Q psy7773 939 SKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNE-VRVLRLITVNS 1001 (1281)
Q Consensus 939 ~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~-V~V~rli~~~t 1001 (1281)
..|+|.|++..|+|+|++.+|+||+++|+.+...++|++||++|.|..|. +.||.|+-.-.
T Consensus 395 --~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~ 456 (501)
T PHA02558 395 --GIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDLS 456 (501)
T ss_pred --CeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeecccc
Confidence 34544445999999999999999999999999999999999999998765 99999997444
No 44
>KOG1001|consensus
Probab=99.96 E-value=4e-30 Score=312.95 Aligned_cols=308 Identities=26% Similarity=0.418 Sum_probs=250.7
Q ss_pred CcccCCHHHHHHHHHHhCCCCCCCHHHHHHHhcccccccCccccccHHHHHHHHHHHHHHhhhhHHhhchhhh-----hh
Q psy7773 1 TPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEV-----ES 75 (1281)
Q Consensus 1 TPiqN~~~eL~sll~fL~p~~l~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~dv-----~~ 75 (1281)
||+||++.|||+++.|+.-.++.....|...+..|...+.. ......++.+|+.+++||+|..- ..
T Consensus 291 tPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~---------~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~ 361 (674)
T KOG1001|consen 291 TPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKY---------KEGVKTLQGILKKVMLRRTKEMEVDGKPIL 361 (674)
T ss_pred ChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhH---------HHHHHHHHHHHHHHHhcccccccccCcccc
Confidence 89999999999999999999999999999988887644431 23467899999999999999621 23
Q ss_pred cCCCceEEEEEeCCCHHHHHHHHHHHHhhhhhccccccCCCCCCchHHHHHHHHHHHHHcCCCcCchhhHH---------
Q psy7773 76 QLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEE--------- 146 (1281)
Q Consensus 76 ~LP~k~~~~v~v~ls~~Q~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~~~~hP~l~~~~~~--------- 146 (1281)
.|||+...++.++++..++.+|..+....................+..++..+.+||++|+||.++.....
T Consensus 362 ~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~ 441 (674)
T KOG1001|consen 362 ELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAA 441 (674)
T ss_pred ccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhccccccccc
Confidence 69999999999999999999999998776655555555555566788889999999999999986532210
Q ss_pred ----HHhhhh---------cCCCc-ccc-------------------C---------------------Cccc----ccC
Q psy7773 147 ----KYCQHI---------GQNNT-VVS-------------------G---------------------PDIY----RTS 168 (1281)
Q Consensus 147 ----~~~~~~---------~~~~~-~~~-------------------~---------------------~~~~----~~s 168 (1281)
...... ..... +.. . .... ..|
T Consensus 442 ~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~~~~~~~~~~s 521 (674)
T KOG1001|consen 442 ALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLPSIINDLLPES 521 (674)
T ss_pred hHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccccchhhhccchh
Confidence 000000 00000 000 0 0000 136
Q ss_pred cHHHHHHHHHHHhhhCCC-eEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 169 GKFELLDRILPKFKETKH-RVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 169 ~K~~~L~~ll~~~~~~~~-kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
.|+..+..+|........ |+||||||+.+++.+...|...|+.+.+++|.++...|...+..|.. ++.+.|+++|.++
T Consensus 522 ~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~-~~~~~vll~Slka 600 (674)
T KOG1001|consen 522 SKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPC-DPLVTALLMSLKA 600 (674)
T ss_pred hhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhccccc-CccHHHHHHHHHH
Confidence 788888888875444444 99999999999999999999999999999999999999999999995 5668999999999
Q ss_pred cccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhccccchhhh
Q psy7773 248 GGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDEKEY 318 (1281)
Q Consensus 248 ~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~~l~~~~~ 318 (1281)
||.||||+.|+||+.+||+|||+.++|||+|+||+||+++|.|++|++.+|+|++|+.++.+|..+....+
T Consensus 601 g~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~~~~~~a~ 671 (674)
T KOG1001|consen 601 GKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNASAF 671 (674)
T ss_pred hhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999987754443
No 45
>PTZ00110 helicase; Provisional
Probab=99.95 E-value=1.8e-26 Score=283.61 Aligned_cols=321 Identities=17% Similarity=0.224 Sum_probs=219.1
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHH-HHHHHHhc----CCCCCEEEEeCCccH-HHHHHHHHHH
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIAL-LTYLMEKK----KNLGPYLVIVPLSTL-SNWVLEFEKW 617 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~l-l~~l~~~~----~~~~~~LIV~P~s~l-~~W~~E~~~~ 617 (1281)
.+|.|+|..++..++ .+.+.|+..+||+|||++.+.. +.++.... +....+|||||+..| .||..++.++
T Consensus 151 ~~pt~iQ~~aip~~l----~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~ 226 (545)
T PTZ00110 151 TEPTPIQVQGWPIAL----SGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKF 226 (545)
T ss_pred CCCCHHHHHHHHHHh----cCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHH
Confidence 479999999998776 4778999999999999987543 34443221 112248999998665 8899999988
Q ss_pred CCC--CcEE-EEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCccccccc--hHHHHHHH
Q psy7773 618 APS--ANVV-AYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNHH--CKLTQTLN 690 (1281)
Q Consensus 618 ~p~--~~~~-~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~~--s~~~~~l~ 690 (1281)
... +.+. +|.|...... ... .....+|+|+|++.|.... ..+.-..+.+|||||||++.... ..+.+++.
T Consensus 227 ~~~~~i~~~~~~gg~~~~~q-~~~--l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~ 303 (545)
T PTZ00110 227 GASSKIRNTVAYGGVPKRGQ-IYA--LRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVS 303 (545)
T ss_pred hcccCccEEEEeCCCCHHHH-HHH--HHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHH
Confidence 754 3444 4444433222 111 1245799999999886542 12222367899999999998543 33445555
Q ss_pred hhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHH
Q psy7773 691 TFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLR 770 (1281)
Q Consensus 691 ~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lR 770 (1281)
.+......+++|||.- .++..+... ++
T Consensus 304 ~~~~~~q~l~~SAT~p----~~v~~l~~~-----------------------------------------------l~-- 330 (545)
T PTZ00110 304 QIRPDRQTLMWSATWP----KEVQSLARD-----------------------------------------------LC-- 330 (545)
T ss_pred hCCCCCeEEEEEeCCC----HHHHHHHHH-----------------------------------------------Hh--
Confidence 4434556789999941 111111100 00
Q ss_pred HhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHH
Q psy7773 771 RLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEK 850 (1281)
Q Consensus 771 R~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~ 850 (1281)
...|. .+.+.... ...... ++ +.
T Consensus 331 -------~~~~v----~i~vg~~~-----------------------l~~~~~----------i~----q~--------- 353 (545)
T PTZ00110 331 -------KEEPV----HVNVGSLD-----------------------LTACHN----------IK----QE--------- 353 (545)
T ss_pred -------ccCCE----EEEECCCc-----------------------cccCCC----------ee----EE---------
Confidence 00000 00000000 000000 00 00
Q ss_pred HHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHH
Q psy7773 851 YCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGEL 930 (1281)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~ 930 (1281)
...+....|...|..+|..+...+.++||||+....++.|...|...|++++.+||.++..+|..+
T Consensus 354 --------------~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~i 419 (545)
T PTZ00110 354 --------------VFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWV 419 (545)
T ss_pred --------------EEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHH
Confidence 001122356777778887776678899999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCC
Q psy7773 931 LRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVN 1000 (1281)
Q Consensus 931 i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~ 1000 (1281)
++.|+++... +||||+++++|||++.+++||+||+|+++..|+||+||++|.|.+-. +|.|++.+
T Consensus 420 l~~F~~G~~~---ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~--ai~~~~~~ 484 (545)
T PTZ00110 420 LNEFKTGKSP---IMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGA--SYTFLTPD 484 (545)
T ss_pred HHHHhcCCCc---EEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEECcc
Confidence 9999986655 59999999999999999999999999999999999999999998654 45556654
No 46
>KOG0354|consensus
Probab=99.95 E-value=4.7e-25 Score=262.98 Aligned_cols=458 Identities=18% Similarity=0.208 Sum_probs=258.7
Q ss_pred cccccccccCcccccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-
Q psy7773 529 TYHEKVTEQASIMVNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL- 607 (1281)
Q Consensus 529 ~~~~~~~~~p~~~~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l- 607 (1281)
...+.......+.....||+||.+.+.-++ +.|.|+|.+||+|||.+|+.++..+++.. ..+.+++.+|..-|
T Consensus 46 ~~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-----gkNtii~lPTG~GKTfIAa~Vm~nh~rw~-p~~KiVF~aP~~pLv 119 (746)
T KOG0354|consen 46 SLDESAAQRWIYPTNLELRNYQEELVQPAL-----GKNTIIALPTGSGKTFIAAVIMKNHFEWR-PKGKVVFLAPTRPLV 119 (746)
T ss_pred CCChhhhccccccCcccccHHHHHHhHHhh-----cCCeEEEeecCCCccchHHHHHHHHHhcC-CcceEEEeeCCchHH
Confidence 333444444444455689999999887766 66899999999999999988887777444 44899999998665
Q ss_pred HHHHHHHHHHCCCCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhccccccc---CceeEEEEeCCccccccchH
Q psy7773 608 SNWVLEFEKWAPSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSK---IQWKCMIIDEGHRMKNHHCK 684 (1281)
Q Consensus 608 ~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~---~~w~~vIvDEaHr~kn~~s~ 684 (1281)
.|....|..++-...+....|+...+.... .. -...+|+++|++.+.++...... -.|.+||||||||....++
T Consensus 120 ~QQ~a~~~~~~~~~~~T~~l~~~~~~~~r~-~i-~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~- 196 (746)
T KOG0354|consen 120 NQQIACFSIYLIPYSVTGQLGDTVPRSNRG-EI-VASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHP- 196 (746)
T ss_pred HHHHHHHhhccCcccceeeccCccCCCchh-hh-hcccceEEeChHhhhhhcccccccccceEEEEEEccccccccccc-
Confidence 666677777664455555555422221111 11 23568999999999887443322 3599999999999875543
Q ss_pred HHHHHHhh----hccCcEEEeecCCCCCChhHHHHHHhhhcCCCC-CChhHHHHHhcccccCCcccccCCHHHHHHHHHH
Q psy7773 685 LTQTLNTF----YNSSHRVLLTGTPLQNKLPELWALLNFLLPSIF-KSCSTFEQWFNAPFATTGEKVELNEEETILIIRR 759 (1281)
Q Consensus 685 ~~~~l~~~----~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~-~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 759 (1281)
+..++..+ +...+.|+|||||= ++.....+.+.=|..++- .........+...-........+ ..........
T Consensus 197 Y~~Vmr~~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~-~~~~~~~~~~ 274 (746)
T KOG0354|consen 197 YNNIMREYLDLKNQGNQILGLTASPG-SKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDL-SLCERDIEDP 274 (746)
T ss_pred HHHHHHHHHHhhhccccEEEEecCCC-ccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcH-HHhhhhhhhh
Confidence 23333222 13447899999997 667766666655544421 00011111110000000000111 1111123456
Q ss_pred HHHhhhHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcC
Q psy7773 760 LHKVLRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCN 839 (1281)
Q Consensus 760 L~~~l~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~ 839 (1281)
|..+++|++.+-.... |++.....-....+..+.. .....+........-....+... .+..+.+
T Consensus 275 f~~~i~p~l~~l~~~~----l~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~q~~~f~~~~~~~~--~~~ll~~ 339 (746)
T KOG0354|consen 275 FGMIIEPLLQQLQEEG----LIEISDKSTSYEQWVVQAE---------KAAAPNGPENQRNCFYALHLRKY--NLALLIS 339 (746)
T ss_pred HHHHHHHHHHHHHhcC----ccccccccccccchhhhhh---------hhhccCCCccchhhHHHHHHHHH--HHHHHhh
Confidence 7778888875543222 2211110000000000000 00000000000000000000000 0000011
Q ss_pred Cccc---------------------hhhhHH----HHHhhhcCCCccccCCccccccchHHHHHHHhhhhhh--cCCeEE
Q psy7773 840 HPFM---------------------FQNIEE----KYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKE--TKHRVL 892 (1281)
Q Consensus 840 hp~l---------------------~~~~~~----~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~--~~~kvL 892 (1281)
|-.- ....+. .+...+........++ ....+|++.|.++|..... +..|+|
T Consensus 340 ~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~--~~~npkle~l~~~l~e~f~~~~dsR~I 417 (746)
T KOG0354|consen 340 DGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDP--PKENPKLEKLVEILVEQFEQNPDSRTI 417 (746)
T ss_pred cchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCC--CccChhHHHHHHHHHHHhhcCCCccEE
Confidence 1000 000000 0000000000011111 1467999999999987765 567999
Q ss_pred EEechHHHHHHHHHHHHH---CCCcEEEEeC--------CCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCC
Q psy7773 893 MFCQMTQLMTILEDYFIW---RDFSYLRLDG--------TTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAAD 961 (1281)
Q Consensus 893 IFsq~~~~ld~L~~~L~~---~g~~~~~l~G--------~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad 961 (1281)
||+.++..+..|..+|.. .|++...+.| ++++.+++.+++.|++|+.+ +|++|.+|.+|||+..||
T Consensus 418 IFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N---vLVATSV~EEGLDI~ec~ 494 (746)
T KOG0354|consen 418 IFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN---VLVATSVAEEGLDIGECN 494 (746)
T ss_pred EEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCcc---EEEEecchhccCCccccc
Confidence 999999999999999873 2455555555 58888999999999997766 699999999999999999
Q ss_pred EEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHh
Q psy7773 962 TVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDEKVIQ 1022 (1281)
Q Consensus 962 ~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~~~~K~~l~~~vi~ 1022 (1281)
.||.||..-||...+||+|| +| ++.-+++-|.+ ++-+-..-..+..|..+....+.
T Consensus 495 lVIcYd~~snpIrmIQrrGR-gR---a~ns~~vll~t-~~~~~~~E~~~~~~e~lm~~~i~ 550 (746)
T KOG0354|consen 495 LVICYDYSSNPIRMVQRRGR-GR---ARNSKCVLLTT-GSEVIEFERNNLAKEKLMNQTIS 550 (746)
T ss_pred EEEEecCCccHHHHHHHhcc-cc---ccCCeEEEEEc-chhHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999 66 44445555555 43333333333444444454443
No 47
>KOG0331|consensus
Probab=99.95 E-value=4e-26 Score=264.80 Aligned_cols=316 Identities=19% Similarity=0.294 Sum_probs=228.2
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHH-HHHHHHHHh-----cCCCCCEEEEeCCccH-HHHHHHHHH
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTI-ALLTYLMEK-----KKNLGPYLVIVPLSTL-SNWVLEFEK 616 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai-~ll~~l~~~-----~~~~~~~LIV~P~s~l-~~W~~E~~~ 616 (1281)
..|.|.|..+...++. +..+|....||+|||+..+ .+|.++... .+....+||++|+.-| .|-+.++..
T Consensus 112 ~~PtpIQaq~wp~~l~----GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~ 187 (519)
T KOG0331|consen 112 EKPTPIQAQGWPIALS----GRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEARE 187 (519)
T ss_pred CCCchhhhcccceecc----CCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHH
Confidence 4788889888776664 7888999999999999955 444555431 1222249999999877 777788888
Q ss_pred HCCCCc---EEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCcccc--ccchHHHHHH
Q psy7773 617 WAPSAN---VVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMK--NHHCKLTQTL 689 (1281)
Q Consensus 617 ~~p~~~---~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~k--n~~s~~~~~l 689 (1281)
+...+. +++|.|.+..-+.. ......+|+|+|+..|.... ..+.-.+..|+|+|||++|. +...+..+++
T Consensus 188 ~~~~~~~~~~cvyGG~~~~~Q~~---~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il 264 (519)
T KOG0331|consen 188 FGKSLRLRSTCVYGGAPKGPQLR---DLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKIL 264 (519)
T ss_pred HcCCCCccEEEEeCCCCccHHHH---HHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccccHHHHHHHH
Confidence 886554 45666654433221 12356899999999997753 34444578899999999997 5667888888
Q ss_pred HhhhccC-cEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHH
Q psy7773 690 NTFYNSS-HRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFL 768 (1281)
Q Consensus 690 ~~~~~~~-~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 768 (1281)
..+.++. ..++.|||-- .+
T Consensus 265 ~~i~~~~rQtlm~saTwp----~~-------------------------------------------------------- 284 (519)
T KOG0331|consen 265 SQIPRPDRQTLMFSATWP----KE-------------------------------------------------------- 284 (519)
T ss_pred HhcCCCcccEEEEeeecc----HH--------------------------------------------------------
Confidence 8875544 4788899820 00
Q ss_pred HHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhH
Q psy7773 769 LRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIE 848 (1281)
Q Consensus 769 lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~ 848 (1281)
+|.+-.++.. .|-.+ .+... ........+.++-..|.
T Consensus 285 v~~lA~~fl~-~~~~i-~ig~~--------------------------------~~~~a~~~i~qive~~~--------- 321 (519)
T KOG0331|consen 285 VRQLAEDFLN-NPIQI-NVGNK--------------------------------KELKANHNIRQIVEVCD--------- 321 (519)
T ss_pred HHHHHHHHhc-CceEE-Eecch--------------------------------hhhhhhcchhhhhhhcC---------
Confidence 1111111111 11111 01000 00001112222222222
Q ss_pred HHHHhhhcCCCccccCCccccccchHHHHHHHhhhhh-hcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHH
Q psy7773 849 EKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFK-ETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDR 927 (1281)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~-~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R 927 (1281)
...|...|..+|.... ..+.||||||+.....+.|+..|...+++.+-|||..++.+|
T Consensus 322 ---------------------~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR 380 (519)
T KOG0331|consen 322 ---------------------ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSER 380 (519)
T ss_pred ---------------------HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHH
Confidence 3468888888888876 456699999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEE
Q psy7773 928 GELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRV 993 (1281)
Q Consensus 928 ~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V 993 (1281)
..+++.|.+++.+ +|++|+++++|||+++.++||+||+|-|...|+||+||++|.|++-....
T Consensus 381 ~~~L~~FreG~~~---vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~t 443 (519)
T KOG0331|consen 381 DWVLKGFREGKSP---VLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAIT 443 (519)
T ss_pred HHHHHhcccCCcc---eEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEE
Confidence 9999999998777 79999999999999999999999999999999999999999888765433
No 48
>KOG0330|consensus
Probab=99.95 E-value=1.8e-26 Score=249.67 Aligned_cols=325 Identities=21% Similarity=0.277 Sum_probs=234.9
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHH-HHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCC-
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQ-TIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAP- 619 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~-ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p- 619 (1281)
-..|.+.|.+++..++ .+..+|.+.+||+|||.. ++-++..|+. .+..-.+||++|..-| .|....|..+..
T Consensus 81 ~~~PT~IQ~~aiP~~L----~g~dvIglAeTGSGKT~afaLPIl~~LL~-~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~ 155 (476)
T KOG0330|consen 81 WKKPTKIQSEAIPVAL----GGRDVIGLAETGSGKTGAFALPILQRLLQ-EPKLFFALVLTPTRELAQQIAEQFEALGSG 155 (476)
T ss_pred cCCCchhhhhhcchhh----CCCcEEEEeccCCCchhhhHHHHHHHHHc-CCCCceEEEecCcHHHHHHHHHHHHHhccc
Confidence 3478899999999887 477889999999999999 5555666664 3444568999999888 555556777753
Q ss_pred -CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccc---cccCceeEEEEeCCccccccc--hHHHHHHHhhh
Q psy7773 620 -SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSV---LSKIQWKCMIIDEGHRMKNHH--CKLTQTLNTFY 693 (1281)
Q Consensus 620 -~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~---l~~~~w~~vIvDEaHr~kn~~--s~~~~~l~~~~ 693 (1281)
++++.++.|..+....... ...+++|+|+|+..|.++... ++.-...++|+|||+++.+.. ..+..+|..+.
T Consensus 156 iglr~~~lvGG~~m~~q~~~--L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip 233 (476)
T KOG0330|consen 156 IGLRVAVLVGGMDMMLQANQ--LSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIP 233 (476)
T ss_pred cCeEEEEEecCchHHHHHHH--hhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcC
Confidence 5677888887665543322 346789999999999887553 333367899999999999755 46677777764
Q ss_pred ccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhH
Q psy7773 694 NSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLK 773 (1281)
Q Consensus 694 ~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k 773 (1281)
..++.+|+|||-- .+...|. +.
T Consensus 234 ~erqt~LfsATMt-~kv~kL~--------------------------------------------------ra------- 255 (476)
T KOG0330|consen 234 RERQTFLFSATMT-KKVRKLQ--------------------------------------------------RA------- 255 (476)
T ss_pred ccceEEEEEeecc-hhhHHHH--------------------------------------------------hh-------
Confidence 5566689999932 1111111 00
Q ss_pred HHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHh
Q psy7773 774 KEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQ 853 (1281)
Q Consensus 774 ~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~ 853 (1281)
.+-.. +.|.-|. .|.. +..|.+ -|+|
T Consensus 256 -----sl~~p----~~v~~s~----ky~t----------------------------v~~lkQ----~ylf--------- 281 (476)
T KOG0330|consen 256 -----SLDNP----VKVAVSS----KYQT----------------------------VDHLKQ----TYLF--------- 281 (476)
T ss_pred -----ccCCC----eEEeccc----hhcc----------------------------hHHhhh----heEe---------
Confidence 00000 0010000 0111 111110 0111
Q ss_pred hhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHh
Q psy7773 854 HIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRK 933 (1281)
Q Consensus 854 ~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~ 933 (1281)
+...-|-..|..+|..+. |..+||||....+.+.+.-+|+..|+..+.|+|.|++..|..+++.
T Consensus 282 --------------v~~k~K~~yLV~ll~e~~--g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~ 345 (476)
T KOG0330|consen 282 --------------VPGKDKDTYLVYLLNELA--GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNK 345 (476)
T ss_pred --------------ccccccchhHHHHHHhhc--CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHH
Confidence 011224556777777543 4679999999999999999999999999999999999999999999
Q ss_pred hcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHH
Q psy7773 934 FNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAA 1009 (1281)
Q Consensus 934 Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~ 1009 (1281)
|+++..+ +|+||++|++|||++.+|+||+||.|-+...|++|.||+.|.| +.-.++.||+. .|-..+++
T Consensus 346 Fk~~~r~---iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtq--yDve~~qr 414 (476)
T KOG0330|consen 346 FKAGARS---ILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQ--YDVELVQR 414 (476)
T ss_pred HhccCCc---EEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEeh--hhhHHHHH
Confidence 9997665 6999999999999999999999999999999999999999999 56678889987 45445555
No 49
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.94 E-value=9.3e-26 Score=274.76 Aligned_cols=317 Identities=19% Similarity=0.265 Sum_probs=220.4
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHC---C
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWA---P 619 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~---p 619 (1281)
.+|.|+|.+++..++ ++.+.|+..+||+|||.+++..+...+........+||+||+..| .||..++..++ +
T Consensus 25 ~~~t~iQ~~ai~~~l----~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 100 (460)
T PRK11776 25 TEMTPIQAQSLPAIL----AGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIP 100 (460)
T ss_pred CCCCHHHHHHHHHHh----cCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 469999999999877 477899999999999988665555544333333368999998655 88998888764 4
Q ss_pred CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCccccccc--hHHHHHHHhhhcc
Q psy7773 620 SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNHH--CKLTQTLNTFYNS 695 (1281)
Q Consensus 620 ~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~~--s~~~~~l~~~~~~ 695 (1281)
+..+..+.|.......... .....+|+|+|++.+.... ..+.-.++++|||||||++.... ..+...+..+...
T Consensus 101 ~~~v~~~~Gg~~~~~~~~~--l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~ 178 (460)
T PRK11776 101 NIKVLTLCGGVPMGPQIDS--LEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPAR 178 (460)
T ss_pred CcEEEEEECCCChHHHHHH--hcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcc
Confidence 6777777776544332221 1256899999999987642 22333468899999999987543 3344455544345
Q ss_pred CcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHH
Q psy7773 696 SHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKE 775 (1281)
Q Consensus 696 ~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~ 775 (1281)
...+++|||+-. ++..+...+ +..
T Consensus 179 ~q~ll~SAT~~~----~~~~l~~~~--------------~~~-------------------------------------- 202 (460)
T PRK11776 179 RQTLLFSATYPE----GIAAISQRF--------------QRD-------------------------------------- 202 (460)
T ss_pred cEEEEEEecCcH----HHHHHHHHh--------------cCC--------------------------------------
Confidence 567999999631 111111100 000
Q ss_pred HhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhh
Q psy7773 776 VESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHI 855 (1281)
Q Consensus 776 v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~ 855 (1281)
|. ...+ .... .... ..+-|.
T Consensus 203 -----~~--~i~~--~~~~-------------------------~~~~--------------i~~~~~------------ 222 (460)
T PRK11776 203 -----PV--EVKV--ESTH-------------------------DLPA--------------IEQRFY------------ 222 (460)
T ss_pred -----CE--EEEE--CcCC-------------------------CCCC--------------eeEEEE------------
Confidence 00 0000 0000 0000 000000
Q ss_pred cCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhc
Q psy7773 856 GQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFN 935 (1281)
Q Consensus 856 ~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn 935 (1281)
......|+..|..+|... .+.++||||.....++.+...|...|+.+..+||++++.+|..+++.|.
T Consensus 223 -----------~~~~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~ 289 (460)
T PRK11776 223 -----------EVSPDERLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFA 289 (460)
T ss_pred -----------EeCcHHHHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 001122666677766543 3457999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCC
Q psy7773 936 EPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVN 1000 (1281)
Q Consensus 936 ~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~ 1000 (1281)
++... +||+|+++++|||++++++||+||+|.++..|+||+||++|.|+.- ..|.|++.+
T Consensus 290 ~g~~~---vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G--~ai~l~~~~ 349 (460)
T PRK11776 290 NRSCS---VLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKG--LALSLVAPE 349 (460)
T ss_pred cCCCc---EEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcc--eEEEEEchh
Confidence 86655 6999999999999999999999999999999999999999999764 455566653
No 50
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=2.2e-25 Score=270.96 Aligned_cols=307 Identities=18% Similarity=0.209 Sum_probs=213.9
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc-cHHHHHHHHHHHCCCCc
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS-TLSNWVLEFEKWAPSAN 622 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s-~l~~W~~E~~~~~p~~~ 622 (1281)
..++|+|.+++.-++. +.++++..+||+|||+..+..+.. ..+.+|||+|+. ++.+|...+.... ..
T Consensus 10 ~~~r~~Q~~ai~~~l~----g~dvlv~apTGsGKTl~y~lp~l~------~~~~~lVi~P~~~L~~dq~~~l~~~g--i~ 77 (470)
T TIGR00614 10 SSFRPVQLEVINAVLL----GRDCFVVMPTGGGKSLCYQLPALC------SDGITLVISPLISLMEDQVLQLKASG--IP 77 (470)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHhHHHHHHHHH------cCCcEEEEecHHHHHHHHHHHHHHcC--Cc
Confidence 4799999999998774 668999999999999876544322 236899999975 4578888887653 44
Q ss_pred EEEEeCCHHH--HHHHHhhhccCCccEEEechHHHhhcccc---c-ccCceeEEEEeCCccccccch----HH--HHHHH
Q psy7773 623 VVAYKGSPLA--RRALQGRMKNSKFNVLLTTYEFIIKDKSV---L-SKIQWKCMIIDEGHRMKNHHC----KL--TQTLN 690 (1281)
Q Consensus 623 ~~~~~g~~~~--r~~~~~~~~~~~~~vvItTye~l~~~~~~---l-~~~~w~~vIvDEaHr~kn~~s----~~--~~~l~ 690 (1281)
+..+.+.... +..+......+.++++++|++.+...... + ...++.+|||||||++..... .+ ...+.
T Consensus 78 ~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 157 (470)
T TIGR00614 78 ATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLK 157 (470)
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHH
Confidence 5555554332 23333344567799999999998764422 2 334789999999999875331 11 11233
Q ss_pred hhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHH
Q psy7773 691 TFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLR 770 (1281)
Q Consensus 691 ~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lR 770 (1281)
..++....++|||||-.....++...+++-.|..+... |
T Consensus 158 ~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s------~----------------------------------- 196 (470)
T TIGR00614 158 QKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS------F----------------------------------- 196 (470)
T ss_pred HHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC------C-----------------------------------
Confidence 33466778999999865554555444433222211000 0
Q ss_pred HhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHH
Q psy7773 771 RLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEK 850 (1281)
Q Consensus 771 R~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~ 850 (1281)
..|.....+..
T Consensus 197 --------~r~nl~~~v~~------------------------------------------------------------- 207 (470)
T TIGR00614 197 --------DRPNLYYEVRR------------------------------------------------------------- 207 (470)
T ss_pred --------CCCCcEEEEEe-------------------------------------------------------------
Confidence 00000000000
Q ss_pred HHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHH
Q psy7773 851 YCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGEL 930 (1281)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~ 930 (1281)
..+..+..+..++.+ ...+.++||||.....++.+...|...|+.+..+||+++..+|..+
T Consensus 208 ------------------~~~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i 268 (470)
T TIGR00614 208 ------------------KTPKILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDV 268 (470)
T ss_pred ------------------CCccHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHH
Confidence 000111222222221 1245668999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEE
Q psy7773 931 LRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 994 (1281)
Q Consensus 931 i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~ 994 (1281)
++.|..+... +|++|.++|+|||++++++||+|++|.++..|.|++||++|.|+...+.+|
T Consensus 269 ~~~F~~g~~~---vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 269 HHKFQRDEIQ---VVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred HHHHHcCCCc---EEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 9999986555 599999999999999999999999999999999999999999998776555
No 51
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.94 E-value=3.1e-25 Score=268.51 Aligned_cols=316 Identities=15% Similarity=0.184 Sum_probs=213.6
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHh----cCCCCCEEEEeCCccH-HHHHHHHHHHC
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEK----KKNLGPYLVIVPLSTL-SNWVLEFEKWA 618 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~----~~~~~~~LIV~P~s~l-~~W~~E~~~~~ 618 (1281)
..|+++|.+++..++ ++.+.|+..+||+|||++++..+...+.. ......+||++|...| .||...+..|+
T Consensus 22 ~~p~~iQ~~ai~~~~----~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~ 97 (434)
T PRK11192 22 TRPTAIQAEAIPPAL----DGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELA 97 (434)
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHH
Confidence 468999999998877 36789999999999999976555443322 1123469999998755 77777777665
Q ss_pred C--CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCccccccc--hHHHHHHHhh
Q psy7773 619 P--SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNHH--CKLTQTLNTF 692 (1281)
Q Consensus 619 p--~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~~--s~~~~~l~~~ 692 (1281)
. ++.+..+.|........ ......++|+|+|++.|.... ..+....+++|||||||++.... ..+...+...
T Consensus 98 ~~~~~~v~~~~gg~~~~~~~--~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~ 175 (434)
T PRK11192 98 KHTHLDIATITGGVAYMNHA--EVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAET 175 (434)
T ss_pred ccCCcEEEEEECCCCHHHHH--HHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhC
Confidence 3 46677777754433221 122356899999999887542 22333467899999999997543 3333333333
Q ss_pred hccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHh
Q psy7773 693 YNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRL 772 (1281)
Q Consensus 693 ~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~ 772 (1281)
....+.+++|||+-...+.++. .++.
T Consensus 176 ~~~~q~~~~SAT~~~~~~~~~~------------------~~~~------------------------------------ 201 (434)
T PRK11192 176 RWRKQTLLFSATLEGDAVQDFA------------------ERLL------------------------------------ 201 (434)
T ss_pred ccccEEEEEEeecCHHHHHHHH------------------HHHc------------------------------------
Confidence 2345668999997422221111 1000
Q ss_pred HHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHH
Q psy7773 773 KKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYC 852 (1281)
Q Consensus 773 k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~ 852 (1281)
..... +.+..+.. . +....|-+..
T Consensus 202 --------~~~~~--i~~~~~~~------------------------~--------------~~~i~~~~~~-------- 225 (434)
T PRK11192 202 --------NDPVE--VEAEPSRR------------------------E--------------RKKIHQWYYR-------- 225 (434)
T ss_pred --------cCCEE--EEecCCcc------------------------c--------------ccCceEEEEE--------
Confidence 00000 00000000 0 0000000000
Q ss_pred hhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHH
Q psy7773 853 QHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLR 932 (1281)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~ 932 (1281)
......|..+|..++.. ....++||||.....++.|...|...|+.+..++|+++..+|..+++
T Consensus 226 --------------~~~~~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~ 289 (434)
T PRK11192 226 --------------ADDLEHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIK 289 (434)
T ss_pred --------------eCCHHHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHH
Confidence 00012355666666643 24568999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEE
Q psy7773 933 KFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 994 (1281)
Q Consensus 933 ~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~ 994 (1281)
.|+++... +|+||+++++|||++.+++||+||+|+++..|+|++||++|.|.+..+.++
T Consensus 290 ~f~~G~~~---vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l 348 (434)
T PRK11192 290 RLTDGRVN---VLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISL 348 (434)
T ss_pred HHhCCCCc---EEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEE
Confidence 99986655 699999999999999999999999999999999999999999987654443
No 52
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.94 E-value=3.6e-25 Score=268.36 Aligned_cols=312 Identities=16% Similarity=0.212 Sum_probs=209.8
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC------CCCCEEEEeCCccH-HHHHHHHHH
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKK------NLGPYLVIVPLSTL-SNWVLEFEK 616 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~------~~~~~LIV~P~s~l-~~W~~E~~~ 616 (1281)
..|.|+|..++..++ .+.+.|+..+||+|||++++..+...+.... ....+|||||...| .||...+..
T Consensus 22 ~~pt~iQ~~ai~~il----~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~ 97 (456)
T PRK10590 22 REPTPIQQQAIPAVL----EGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRD 97 (456)
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHH
Confidence 479999999998776 3678999999999999997766555443221 11258999998665 889999988
Q ss_pred HCC--CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCccccccc--hHHHHHHH
Q psy7773 617 WAP--SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNHH--CKLTQTLN 690 (1281)
Q Consensus 617 ~~p--~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~~--s~~~~~l~ 690 (1281)
++. ++.+..+.|......... .....++|+|+|++.|.... ..+.....++|||||||++.... ..+...+.
T Consensus 98 ~~~~~~~~~~~~~gg~~~~~~~~--~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~ 175 (456)
T PRK10590 98 YSKYLNIRSLVVFGGVSINPQMM--KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLA 175 (456)
T ss_pred HhccCCCEEEEEECCcCHHHHHH--HHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHHHHHHH
Confidence 764 344555555433322211 12357899999999986542 22333468899999999987543 23334444
Q ss_pred hhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHH
Q psy7773 691 TFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLR 770 (1281)
Q Consensus 691 ~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lR 770 (1281)
.+......+++|||+-. .+.++ ...+ +..|... ....
T Consensus 176 ~l~~~~q~l~~SAT~~~-~~~~l---~~~~--------------~~~~~~i-----~~~~-------------------- 212 (456)
T PRK10590 176 KLPAKRQNLLFSATFSD-DIKAL---AEKL--------------LHNPLEI-----EVAR-------------------- 212 (456)
T ss_pred hCCccCeEEEEeCCCcH-HHHHH---HHHH--------------cCCCeEE-----EEec--------------------
Confidence 44334567999999632 11111 1100 0000000 0000
Q ss_pred HhHHHHhhcCCCce-EEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHH
Q psy7773 771 RLKKEVESQLPEKV-EYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEE 849 (1281)
Q Consensus 771 R~k~~v~~~lP~k~-~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~ 849 (1281)
. ...+... ..+..
T Consensus 213 ---~---~~~~~~i~~~~~~------------------------------------------------------------ 226 (456)
T PRK10590 213 ---R---NTASEQVTQHVHF------------------------------------------------------------ 226 (456)
T ss_pred ---c---cccccceeEEEEE------------------------------------------------------------
Confidence 0 0000000 00000
Q ss_pred HHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHH
Q psy7773 850 KYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGE 929 (1281)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~ 929 (1281)
+....|..+|..++.. ....++||||.....++.|...|...|+.+..+||.++..+|..
T Consensus 227 ------------------~~~~~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~ 286 (456)
T PRK10590 227 ------------------VDKKRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTR 286 (456)
T ss_pred ------------------cCHHHHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHH
Confidence 0011233334444332 23468999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEE
Q psy7773 930 LLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRV 993 (1281)
Q Consensus 930 ~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V 993 (1281)
+++.|.++... +||||+++++|||++++++||+||+|.++..|+|++||++|.|.+..+.+
T Consensus 287 ~l~~F~~g~~~---iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~ 347 (456)
T PRK10590 287 ALADFKSGDIR---VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALS 347 (456)
T ss_pred HHHHHHcCCCc---EEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEE
Confidence 99999986554 59999999999999999999999999999999999999999998765443
No 53
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.93 E-value=1.1e-24 Score=265.87 Aligned_cols=318 Identities=18% Similarity=0.265 Sum_probs=215.0
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCC-------CCCEEEEeCCccH-HHHHHHHH
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKN-------LGPYLVIVPLSTL-SNWVLEFE 615 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~-------~~~~LIV~P~s~l-~~W~~E~~ 615 (1281)
..|+|||.+++..++ ++.+.|++.+||+|||+..+..+...+..... ...+|||+|+..| .||...+.
T Consensus 108 ~~~~~iQ~~ai~~~~----~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~ 183 (475)
T PRK01297 108 PYCTPIQAQVLGYTL----AGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAA 183 (475)
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 479999999998766 57789999999999999876554443322211 2468999998665 78888887
Q ss_pred HHCC--CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhccc--ccccCceeEEEEeCCccccccc--hHHHHHH
Q psy7773 616 KWAP--SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKS--VLSKIQWKCMIIDEGHRMKNHH--CKLTQTL 689 (1281)
Q Consensus 616 ~~~p--~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~--~l~~~~w~~vIvDEaHr~kn~~--s~~~~~l 689 (1281)
.+.. +..+..+.|......... ......++|+|+|++.|..... .+.--+.++|||||||++.+.. ..+.+.+
T Consensus 184 ~l~~~~~~~v~~~~gg~~~~~~~~-~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~ 262 (475)
T PRK01297 184 ALTKYTGLNVMTFVGGMDFDKQLK-QLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQII 262 (475)
T ss_pred HhhccCCCEEEEEEccCChHHHHH-HHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHHHH
Confidence 7653 456777777543322221 2224568999999999965422 1222356899999999997543 2233444
Q ss_pred Hhhh--ccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHH
Q psy7773 690 NTFY--NSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPF 767 (1281)
Q Consensus 690 ~~~~--~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 767 (1281)
..+. .....+++|||... ++.++ .. .|...
T Consensus 263 ~~~~~~~~~q~i~~SAT~~~-~~~~~---~~--------------~~~~~------------------------------ 294 (475)
T PRK01297 263 RQTPRKEERQTLLFSATFTD-DVMNL---AK--------------QWTTD------------------------------ 294 (475)
T ss_pred HhCCCCCCceEEEEEeecCH-HHHHH---HH--------------HhccC------------------------------
Confidence 3321 12467899999532 11111 10 00000
Q ss_pred HHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhh
Q psy7773 768 LLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNI 847 (1281)
Q Consensus 768 ~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~ 847 (1281)
|. .+.+.... ... .. +. .|-+
T Consensus 295 -------------~~----~v~~~~~~-----------------------~~~-~~----------~~---~~~~----- 315 (475)
T PRK01297 295 -------------PA----IVEIEPEN-----------------------VAS-DT----------VE---QHVY----- 315 (475)
T ss_pred -------------CE----EEEeccCc-----------------------CCC-Cc----------cc---EEEE-----
Confidence 00 00000000 000 00 00 0000
Q ss_pred HHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHH
Q psy7773 848 EEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDR 927 (1281)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R 927 (1281)
....+.|..+|..++.. ....++||||+....++.|...|...|+.+..++|+++..+|
T Consensus 316 -------------------~~~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R 374 (475)
T PRK01297 316 -------------------AVAGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKR 374 (475)
T ss_pred -------------------EecchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHH
Confidence 11123466677776654 235689999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeC
Q psy7773 928 GELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITV 999 (1281)
Q Consensus 928 ~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~ 999 (1281)
..+++.|++++.. +|+||+++++|||++++++||+||+|+|+..|+|++||++|.|+.-. ++.|++.
T Consensus 375 ~~~~~~Fr~G~~~---vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~--~i~~~~~ 441 (475)
T PRK01297 375 IKTLEGFREGKIR---VLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGV--SISFAGE 441 (475)
T ss_pred HHHHHHHhCCCCc---EEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCce--EEEEecH
Confidence 9999999986655 59999999999999999999999999999999999999999998654 4444543
No 54
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.93 E-value=1.4e-24 Score=268.78 Aligned_cols=314 Identities=15% Similarity=0.195 Sum_probs=216.0
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHC---C
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWA---P 619 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~---p 619 (1281)
.+|.|+|..++..++. +.+.|+..+||+|||++.+..+...+........+|||||...| .||..++..|. +
T Consensus 27 ~~ptpiQ~~ai~~ll~----g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~ 102 (629)
T PRK11634 27 EKPSPIQAECIPHLLN----GRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR 102 (629)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 4799999999998773 66889999999999998765554444333333468999998655 89988887764 5
Q ss_pred CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCccccccc--hHHHHHHHhhhcc
Q psy7773 620 SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNHH--CKLTQTLNTFYNS 695 (1281)
Q Consensus 620 ~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~~--s~~~~~l~~~~~~ 695 (1281)
++.++.++|.......... .....+|+|+|++.|.... ..+.-.++.+|||||||.+.... ..+..++..+...
T Consensus 103 ~i~v~~~~gG~~~~~q~~~--l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~ 180 (629)
T PRK11634 103 GVNVVALYGGQRYDVQLRA--LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG 180 (629)
T ss_pred CceEEEEECCcCHHHHHHH--hcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCC
Confidence 6777766665443322221 2346899999999987642 22333467889999999987543 3344555554344
Q ss_pred CcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHH
Q psy7773 696 SHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKE 775 (1281)
Q Consensus 696 ~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~ 775 (1281)
...+++|||.-. .+..+ .. .|
T Consensus 181 ~q~llfSAT~p~-~i~~i---~~-----------------------------------------------~~-------- 201 (629)
T PRK11634 181 HQTALFSATMPE-AIRRI---TR-----------------------------------------------RF-------- 201 (629)
T ss_pred CeEEEEEccCCh-hHHHH---HH-----------------------------------------------HH--------
Confidence 567899999521 11110 00 00
Q ss_pred HhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhh
Q psy7773 776 VESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHI 855 (1281)
Q Consensus 776 v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~ 855 (1281)
+.......+..... ... ...+.|.
T Consensus 202 ----l~~~~~i~i~~~~~--------------------------~~~--------------~i~q~~~------------ 225 (629)
T PRK11634 202 ----MKEPQEVRIQSSVT--------------------------TRP--------------DISQSYW------------ 225 (629)
T ss_pred ----cCCCeEEEccCccc--------------------------cCC--------------ceEEEEE------------
Confidence 00100000000000 000 0000000
Q ss_pred cCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhc
Q psy7773 856 GQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFN 935 (1281)
Q Consensus 856 ~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn 935 (1281)
.+....|...|..+|... ...++||||.....++.|...|...|+....++|.+++.+|..+++.|.
T Consensus 226 -----------~v~~~~k~~~L~~~L~~~--~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr 292 (629)
T PRK11634 226 -----------TVWGMRKNEALVRFLEAE--DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLK 292 (629)
T ss_pred -----------EechhhHHHHHHHHHHhc--CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHh
Confidence 011123666666666542 3457999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEE
Q psy7773 936 EPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 994 (1281)
Q Consensus 936 ~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~ 994 (1281)
.+... +||||+++++|||++.+++||+||+|.++..|+|++||++|.|..-.+.+|
T Consensus 293 ~G~~~---ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~ 348 (629)
T PRK11634 293 DGRLD---ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLF 348 (629)
T ss_pred CCCCC---EEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEE
Confidence 87655 699999999999999999999999999999999999999999986544333
No 55
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.93 E-value=8.1e-25 Score=268.36 Aligned_cols=315 Identities=17% Similarity=0.207 Sum_probs=211.5
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHH-HHHHh------cCCCCCEEEEeCCccH-HHHHHHHH
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLT-YLMEK------KKNLGPYLVIVPLSTL-SNWVLEFE 615 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~-~l~~~------~~~~~~~LIV~P~s~l-~~W~~E~~ 615 (1281)
..|+|+|..++..++ .+.+.|+..+||+|||++++..+. ++... ......+|||+|+..| .|+..++.
T Consensus 142 ~~ptpiQ~~aip~il----~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~ 217 (518)
T PLN00206 142 EFPTPIQMQAIPAAL----SGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAK 217 (518)
T ss_pred CCCCHHHHHHHHHHh----cCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 479999999998877 477899999999999998765543 33321 1123468999998665 77888887
Q ss_pred HHCCC--CcEE-EEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCccccccc--hHHHHH
Q psy7773 616 KWAPS--ANVV-AYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNHH--CKLTQT 688 (1281)
Q Consensus 616 ~~~p~--~~~~-~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~~--s~~~~~ 688 (1281)
.+... +.+. ++.|...... .. . ....++|+|+|++.|.... ..+......+|||||||+|.... ..+...
T Consensus 218 ~l~~~~~~~~~~~~gG~~~~~q-~~-~-l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i 294 (518)
T PLN00206 218 VLGKGLPFKTALVVGGDAMPQQ-LY-R-IQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQI 294 (518)
T ss_pred HHhCCCCceEEEEECCcchHHH-HH-H-hcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHH
Confidence 77643 3333 4444433222 11 1 1346899999999875532 12333467899999999997533 334444
Q ss_pred HHhhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHH
Q psy7773 689 LNTFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFL 768 (1281)
Q Consensus 689 l~~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 768 (1281)
+..+ ...+.+++|||.-. .+. .+...+.... .. +....
T Consensus 295 ~~~l-~~~q~l~~SATl~~-~v~---~l~~~~~~~~--------------~~-----i~~~~------------------ 332 (518)
T PLN00206 295 FQAL-SQPQVLLFSATVSP-EVE---KFASSLAKDI--------------IL-----ISIGN------------------ 332 (518)
T ss_pred HHhC-CCCcEEEEEeeCCH-HHH---HHHHHhCCCC--------------EE-----EEeCC------------------
Confidence 5443 66788999999532 111 1111110000 00 00000
Q ss_pred HHHhHHHHhhcCCCc--eEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhh
Q psy7773 769 LRRLKKEVESQLPEK--VEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQN 846 (1281)
Q Consensus 769 lRR~k~~v~~~lP~k--~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~ 846 (1281)
...|.. ....+++
T Consensus 333 ---------~~~~~~~v~q~~~~~-------------------------------------------------------- 347 (518)
T PLN00206 333 ---------PNRPNKAVKQLAIWV-------------------------------------------------------- 347 (518)
T ss_pred ---------CCCCCcceeEEEEec--------------------------------------------------------
Confidence 000000 0000000
Q ss_pred hHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHH-CCCcEEEEeCCCChH
Q psy7773 847 IEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIW-RDFSYLRLDGTTKSE 925 (1281)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~-~g~~~~~l~G~~~~~ 925 (1281)
....|...|..+|........++|||+.....++.|...|.. .|+++..+||+++..
T Consensus 348 ----------------------~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~ 405 (518)
T PLN00206 348 ----------------------ETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMK 405 (518)
T ss_pred ----------------------cchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHH
Confidence 112234445555554444456799999999999999999975 699999999999999
Q ss_pred HHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeC
Q psy7773 926 DRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITV 999 (1281)
Q Consensus 926 ~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~ 999 (1281)
+|..+++.|.++... +|++|+++++|||++.+++||+||+|.++..|+|++||++|.|..- .++.|++.
T Consensus 406 eR~~il~~Fr~G~~~---ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G--~ai~f~~~ 474 (518)
T PLN00206 406 ERREVMKSFLVGEVP---VIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKG--TAIVFVNE 474 (518)
T ss_pred HHHHHHHHHHCCCCC---EEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCe--EEEEEEch
Confidence 999999999987655 5999999999999999999999999999999999999999999754 44455654
No 56
>KOG1123|consensus
Probab=99.93 E-value=5.8e-25 Score=243.16 Aligned_cols=389 Identities=19% Similarity=0.313 Sum_probs=266.3
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcc-HHHHHHHHHHHCC--
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLST-LSNWVLEFEKWAP-- 619 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~-l~~W~~E~~~~~p-- 619 (1281)
..++||||...+..|... .....||+..++|.|||++.+..++.. .+.+||+|-.++ +.||...|..|..
T Consensus 300 st~iRpYQEksL~KMFGN-gRARSGiIVLPCGAGKtLVGvTAa~ti------kK~clvLcts~VSVeQWkqQfk~wsti~ 372 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKTLVGVTAACTI------KKSCLVLCTSAVSVEQWKQQFKQWSTIQ 372 (776)
T ss_pred ccccCchHHHHHHHHhCC-CcccCceEEEecCCCCceeeeeeeeee------cccEEEEecCccCHHHHHHHHHhhcccC
Confidence 357999999999888742 122368999999999999988776654 368999999877 5999999999983
Q ss_pred CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhc----------ccccccCceeEEEEeCCccccccchHHHHHH
Q psy7773 620 SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKD----------KSVLSKIQWKCMIIDEGHRMKNHHCKLTQTL 689 (1281)
Q Consensus 620 ~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~----------~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l 689 (1281)
+-.++.|......+ ......|+||||.++... ..++....|.++|+||.|-+- +++++.+
T Consensus 373 d~~i~rFTsd~Ke~-------~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvP---A~MFRRV 442 (776)
T KOG1123|consen 373 DDQICRFTSDAKER-------FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVP---AKMFRRV 442 (776)
T ss_pred ccceEEeecccccc-------CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccch---HHHHHHH
Confidence 34456665543222 245678999999998643 356777799999999999873 4556666
Q ss_pred HhhhccCcEEEeecCCCCCChhHHHHHHhhh-cCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHH
Q psy7773 690 NTFYNSSHRVLLTGTPLQNKLPELWALLNFL-LPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFL 768 (1281)
Q Consensus 690 ~~~~~~~~rllLTgTPl~n~~~el~~ll~fl-~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 768 (1281)
..+.++...|+||||-+..+ |-..-|||| .|.++.. .|.+...
T Consensus 443 lsiv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYEA--nWmdL~~-------------------------------- 486 (776)
T KOG1123|consen 443 LSIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA--NWMDLQK-------------------------------- 486 (776)
T ss_pred HHHHHHHhhccceeEEeecc--ccccccceeecchhhhc--cHHHHHh--------------------------------
Confidence 66668888999999987532 223335665 4444311 0110000
Q ss_pred HHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhH
Q psy7773 769 LRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIE 848 (1281)
Q Consensus 769 lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~ 848 (1281)
...+..-.-..|||+||+....-|-....+. |.+.
T Consensus 487 --------kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~k---------------------------r~lL---------- 521 (776)
T KOG1123|consen 487 --------KGHIAKVQCAEVWCPMTPEFYREYLRENTRK---------------------------RMLL---------- 521 (776)
T ss_pred --------CCceeEEeeeeeecCCCHHHHHHHHhhhhhh---------------------------hhee----------
Confidence 0013334456799999987655553211100 0000
Q ss_pred HHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHH
Q psy7773 849 EKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRG 928 (1281)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~ 928 (1281)
.+-...||++..-+++.+...|+|+||||..+..|...+- ..|-+| |.|.|++.+|.
T Consensus 522 ------------------yvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAi---kl~Kpf--IYG~Tsq~ERm 578 (776)
T KOG1123|consen 522 ------------------YVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAI---KLGKPF--IYGPTSQNERM 578 (776)
T ss_pred ------------------eecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHH---HcCCce--EECCCchhHHH
Confidence 0123468888888898888899999999999877655443 344444 68999999999
Q ss_pred HHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCC-CChhhhhhHhHhHHhhCCCC----ceEEEEEEeCCCHH
Q psy7773 929 ELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSD-WNPHQDLQAQDRAHRIGQKN----EVRVLRLITVNSVE 1003 (1281)
Q Consensus 929 ~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~-wnp~~~~Qa~gR~~RiGQ~k----~V~V~rli~~~tiE 1003 (1281)
++++.|+. +..+.- ++-+.+|...+||+.|+.+|-..+. -+-.+..||.||+-|.-..+ .++.|-||+.+|.|
T Consensus 579 ~ILqnFq~-n~~vNT-IFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqE 656 (776)
T KOG1123|consen 579 KILQNFQT-NPKVNT-IFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQE 656 (776)
T ss_pred HHHHhccc-CCccce-EEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHH
Confidence 99999986 445554 3346899999999999999999885 47789999999999976443 38999999999988
Q ss_pred HHHHHHHHHHHHHHH-----HHHh--cCcCCCC----CChhhHHHHHHHHhccCCchhhcCCCC
Q psy7773 1004 ERILAAARYKLNMDE-----KVIQ--AGMFDQK----STGSERHEFLQTILHQDDEEEEENEVP 1056 (1281)
Q Consensus 1004 e~I~~~~~~K~~l~~-----~vi~--~g~~~~~----~~~~~~~~~l~~il~~~~~~~~~~~~~ 1056 (1281)
-.- .-++..-|.+ +||. .||.... .+.+++.++|+.+|...+.+.+.+...
T Consensus 657 M~Y--StKRQ~FLidQGYsfkVit~L~gme~~~~l~y~skeeq~~LLq~Vl~a~d~~~e~E~~~ 718 (776)
T KOG1123|consen 657 MYY--STKRQQFLIDQGYSFKVITNLPGMENLEDLAYASKEEQLELLQKVLLASDLDAELEDLE 718 (776)
T ss_pred HHh--hhhhhhhhhhcCceEEEeecCCCcCcCcccccCCHHHHHHHHHHHHhcchhhhcccccc
Confidence 432 2222222222 1222 1443222 356778888998888777554444333
No 57
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.93 E-value=9e-25 Score=263.22 Aligned_cols=317 Identities=16% Similarity=0.171 Sum_probs=212.9
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHh-cC------CCCCEEEEeCCccH-HHHHHHHH
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEK-KK------NLGPYLVIVPLSTL-SNWVLEFE 615 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~-~~------~~~~~LIV~P~s~l-~~W~~E~~ 615 (1281)
..|.|+|..++.-++ ++.+.|+..+||+|||++++..+...+.. .. ....+|||||...| .||..++.
T Consensus 29 ~~pt~iQ~~aip~il----~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~ 104 (423)
T PRK04837 29 HNCTPIQALALPLTL----AGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAE 104 (423)
T ss_pred CCCCHHHHHHHHHHh----CCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHH
Confidence 478899999998776 47789999999999999976555443322 11 12358999998665 88888877
Q ss_pred HHCC--CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCccccccc--hHHHHHH
Q psy7773 616 KWAP--SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNHH--CKLTQTL 689 (1281)
Q Consensus 616 ~~~p--~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~~--s~~~~~l 689 (1281)
.+.. ++.+..+.|......... .....++|+|+|++.|.... ..+.-..+.+|||||||++.... ..+...+
T Consensus 105 ~l~~~~~~~v~~~~gg~~~~~~~~--~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~ 182 (423)
T PRK04837 105 PLAQATGLKLGLAYGGDGYDKQLK--VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLF 182 (423)
T ss_pred HHhccCCceEEEEECCCCHHHHHH--HhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHHHH
Confidence 7653 456666666543322221 12346799999999986542 23344468899999999987543 2233333
Q ss_pred Hhhhc--cCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHH
Q psy7773 690 NTFYN--SSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPF 767 (1281)
Q Consensus 690 ~~~~~--~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 767 (1281)
..+.. ....+++|||+-. .+.++.. .+
T Consensus 183 ~~~~~~~~~~~~l~SAT~~~-~~~~~~~-----------------~~--------------------------------- 211 (423)
T PRK04837 183 RRMPPANQRLNMLFSATLSY-RVRELAF-----------------EH--------------------------------- 211 (423)
T ss_pred HhCCCccceeEEEEeccCCH-HHHHHHH-----------------HH---------------------------------
Confidence 33311 2235789999521 1111100 00
Q ss_pred HHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhh
Q psy7773 768 LLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNI 847 (1281)
Q Consensus 768 ~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~ 847 (1281)
+.......+. +.. ... . ...+.+.+
T Consensus 212 ------------~~~p~~i~v~-~~~------------------------~~~-~--------------~i~~~~~~--- 236 (423)
T PRK04837 212 ------------MNNPEYVEVE-PEQ------------------------KTG-H--------------RIKEELFY--- 236 (423)
T ss_pred ------------CCCCEEEEEc-CCC------------------------cCC-C--------------ceeEEEEe---
Confidence 0000000000 000 000 0 00000000
Q ss_pred HHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHH
Q psy7773 848 EEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDR 927 (1281)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R 927 (1281)
.....|+..|..++.. ....++||||.....++.|...|...|+++..++|.++..+|
T Consensus 237 --------------------~~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R 294 (423)
T PRK04837 237 --------------------PSNEEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKR 294 (423)
T ss_pred --------------------CCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHH
Confidence 0112366666666654 235689999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeC
Q psy7773 928 GELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITV 999 (1281)
Q Consensus 928 ~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~ 999 (1281)
..+++.|++++.. +|++|+++++|||++++++||+||+|+++..|.|++||++|.|+.-. ++.|++.
T Consensus 295 ~~~l~~F~~g~~~---vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~--ai~~~~~ 361 (423)
T PRK04837 295 LRILEEFTRGDLD---ILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGH--SISLACE 361 (423)
T ss_pred HHHHHHHHcCCCc---EEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCee--EEEEeCH
Confidence 9999999987655 69999999999999999999999999999999999999999997754 3445543
No 58
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.93 E-value=1.3e-24 Score=267.85 Aligned_cols=316 Identities=17% Similarity=0.233 Sum_probs=212.7
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhc-------CCCCCEEEEeCCccH-HHHHHHHH
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKK-------KNLGPYLVIVPLSTL-SNWVLEFE 615 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~-------~~~~~~LIV~P~s~l-~~W~~E~~ 615 (1281)
..+.|.|..++..++ ++.+.|+..+||+|||+.++..+...+... .....+|||||...| .|+...+.
T Consensus 30 ~~ptpiQ~~~ip~~l----~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~ 105 (572)
T PRK04537 30 TRCTPIQALTLPVAL----PGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAV 105 (572)
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 479999999999877 477899999999999999776555433221 112479999998665 88888888
Q ss_pred HHCCC--CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhccc---ccccCceeEEEEeCCccccccc--hHHHHH
Q psy7773 616 KWAPS--ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKS---VLSKIQWKCMIIDEGHRMKNHH--CKLTQT 688 (1281)
Q Consensus 616 ~~~p~--~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~---~l~~~~w~~vIvDEaHr~kn~~--s~~~~~ 688 (1281)
+|... +.+..+.|........ ......++|+|+|++.|..... .+....+.+|||||||++.... ..+..+
T Consensus 106 ~l~~~~~i~v~~l~Gg~~~~~q~--~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~i 183 (572)
T PRK04537 106 KFGADLGLRFALVYGGVDYDKQR--ELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFL 183 (572)
T ss_pred HHhccCCceEEEEECCCCHHHHH--HHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHH
Confidence 88754 4555666653332221 1123468999999999876432 2333467899999999986432 222333
Q ss_pred HHhhhc--cCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhH
Q psy7773 689 LNTFYN--SSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRP 766 (1281)
Q Consensus 689 l~~~~~--~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 766 (1281)
+..+.. ....+++|||.-. .+.+ +... ++..
T Consensus 184 l~~lp~~~~~q~ll~SATl~~-~v~~---l~~~--------------~l~~----------------------------- 216 (572)
T PRK04537 184 LRRMPERGTRQTLLFSATLSH-RVLE---LAYE--------------HMNE----------------------------- 216 (572)
T ss_pred HHhcccccCceEEEEeCCccH-HHHH---HHHH--------------HhcC-----------------------------
Confidence 333311 3457899999521 1111 1100 0000
Q ss_pred HHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhh
Q psy7773 767 FLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQN 846 (1281)
Q Consensus 767 ~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~ 846 (1281)
|.. ..+.... ... . .++ |-+.+
T Consensus 217 --------------p~~--i~v~~~~-------------------------~~~-~----------~i~----q~~~~-- 238 (572)
T PRK04537 217 --------------PEK--LVVETET-------------------------ITA-A----------RVR----QRIYF-- 238 (572)
T ss_pred --------------CcE--EEecccc-------------------------ccc-c----------cee----EEEEe--
Confidence 000 0000000 000 0 000 00000
Q ss_pred hHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHH
Q psy7773 847 IEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSED 926 (1281)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~ 926 (1281)
.....|+..|..+|.. ..+.++||||.....++.|...|...|+.+..+||.++..+
T Consensus 239 ---------------------~~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~e 295 (572)
T PRK04537 239 ---------------------PADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKK 295 (572)
T ss_pred ---------------------cCHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHH
Confidence 0012345555555543 34678999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEe
Q psy7773 927 RGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLIT 998 (1281)
Q Consensus 927 R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~ 998 (1281)
|..+++.|.++... +||||+++++|||++.+++||+||.|+++..|+|++||++|.|..-.+. .|++
T Consensus 296 R~~il~~Fr~G~~~---VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai--~~~~ 362 (572)
T PRK04537 296 RESLLNRFQKGQLE---ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAI--SFAC 362 (572)
T ss_pred HHHHHHHHHcCCCe---EEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEE--EEec
Confidence 99999999986554 5999999999999999999999999999999999999999999875543 4444
No 59
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.93 E-value=3.2e-24 Score=267.41 Aligned_cols=304 Identities=17% Similarity=0.186 Sum_probs=210.4
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHCCCCc
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWAPSAN 622 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~p~~~ 622 (1281)
..++|+|.+++.-++ ++.++++..+||+|||+++...+.. . .+.+|||+|. +++.+|...+... +..
T Consensus 24 ~~~r~~Q~~ai~~il----~g~dvlv~apTGsGKTl~y~lpal~---~---~g~tlVisPl~sL~~dqv~~l~~~--gi~ 91 (607)
T PRK11057 24 QQFRPGQQEIIDAVL----SGRDCLVVMPTGGGKSLCYQIPALV---L---DGLTLVVSPLISLMKDQVDQLLAN--GVA 91 (607)
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHHH---c---CCCEEEEecHHHHHHHHHHHHHHc--CCc
Confidence 379999999998776 4778999999999999876544322 1 3579999997 4557788888765 345
Q ss_pred EEEEeCCHHHH--HHHHhhhccCCccEEEechHHHhhc--ccccccCceeEEEEeCCccccccch------HHHHHHHhh
Q psy7773 623 VVAYKGSPLAR--RALQGRMKNSKFNVLLTTYEFIIKD--KSVLSKIQWKCMIIDEGHRMKNHHC------KLTQTLNTF 692 (1281)
Q Consensus 623 ~~~~~g~~~~r--~~~~~~~~~~~~~vvItTye~l~~~--~~~l~~~~w~~vIvDEaHr~kn~~s------~~~~~l~~~ 692 (1281)
...+.+..... .........+..+++++|++.+... ...+...++.+|||||||++..... .....+...
T Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~ 171 (607)
T PRK11057 92 AACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQR 171 (607)
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHh
Confidence 55555543222 2222334456789999999998643 2334445789999999999875321 111223333
Q ss_pred hccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHh
Q psy7773 693 YNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRL 772 (1281)
Q Consensus 693 ~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~ 772 (1281)
++....++||||+-.....++...+.+-.|..+.. .|.
T Consensus 172 ~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~------~~~------------------------------------ 209 (607)
T PRK11057 172 FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS------SFD------------------------------------ 209 (607)
T ss_pred CCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEEC------CCC------------------------------------
Confidence 45667899999986655445444443322211100 000
Q ss_pred HHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHH
Q psy7773 773 KKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYC 852 (1281)
Q Consensus 773 k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~ 852 (1281)
.|... +.+
T Consensus 210 -------r~nl~-~~v---------------------------------------------------------------- 217 (607)
T PRK11057 210 -------RPNIR-YTL---------------------------------------------------------------- 217 (607)
T ss_pred -------CCcce-eee----------------------------------------------------------------
Confidence 00000 000
Q ss_pred hhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHH
Q psy7773 853 QHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLR 932 (1281)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~ 932 (1281)
.....++..|..++.. ..+.++||||.....++.+...|...|+++..+||+++..+|..+++
T Consensus 218 ---------------~~~~~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~ 280 (607)
T PRK11057 218 ---------------VEKFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQE 280 (607)
T ss_pred ---------------eeccchHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHH
Confidence 0000111222222222 24678999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEE
Q psy7773 933 KFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRV 993 (1281)
Q Consensus 933 ~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V 993 (1281)
.|..+... +|++|.++|+|||++++++||+||+|.++..|.|++||++|.|....+.+
T Consensus 281 ~F~~g~~~---VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~il 338 (607)
T PRK11057 281 AFQRDDLQ---IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (607)
T ss_pred HHHCCCCC---EEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEE
Confidence 99986655 59999999999999999999999999999999999999999997765433
No 60
>KOG0338|consensus
Probab=99.93 E-value=2.9e-24 Score=238.90 Aligned_cols=331 Identities=20% Similarity=0.273 Sum_probs=228.7
Q ss_pred cccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHH-HHHHHHHHhcCC--CCCEEEEeCCccH----HHHHHH
Q psy7773 541 MVNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTI-ALLTYLMEKKKN--LGPYLVIVPLSTL----SNWVLE 613 (1281)
Q Consensus 541 ~~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai-~ll~~l~~~~~~--~~~~LIV~P~s~l----~~W~~E 613 (1281)
+....+.|.|...+.-.+. +...+-|..||+|||...+ -+|..|+.+... ..++||+||+.-| .+....
T Consensus 199 lGy~~PTpIQ~a~IPvall----gkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~q 274 (691)
T KOG0338|consen 199 LGYKKPTPIQVATIPVALL----GKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQ 274 (691)
T ss_pred cCCCCCCchhhhcccHHhh----cchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHH
Confidence 3445889999998875543 3444667889999998844 445555544332 3478999998776 344555
Q ss_pred HHHHCCCCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccC---ceeEEEEeCCcccc--ccchHHHHH
Q psy7773 614 FEKWAPSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKI---QWKCMIIDEGHRMK--NHHCKLTQT 688 (1281)
Q Consensus 614 ~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~---~w~~vIvDEaHr~k--n~~s~~~~~ 688 (1281)
+..|+ ++.+.+..|.-+.+. +.......++|||+|++.|+.+...-..+ ...++|+|||+||. .+...+..+
T Consensus 275 laqFt-~I~~~L~vGGL~lk~--QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLeegFademnEi 351 (691)
T KOG0338|consen 275 LAQFT-DITVGLAVGGLDLKA--QEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEI 351 (691)
T ss_pred HHhhc-cceeeeeecCccHHH--HHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHHHHHHHHHHH
Confidence 66676 688888888766553 23344578999999999999875544444 56789999999998 455667777
Q ss_pred HHhhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHH
Q psy7773 689 LNTFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFL 768 (1281)
Q Consensus 689 l~~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 768 (1281)
+..+.+++..+|+|||- ...+.+|.++ -+ ++|+.
T Consensus 352 i~lcpk~RQTmLFSATM-teeVkdL~sl---SL--------------~kPvr---------------------------- 385 (691)
T KOG0338|consen 352 IRLCPKNRQTMLFSATM-TEEVKDLASL---SL--------------NKPVR---------------------------- 385 (691)
T ss_pred HHhccccccceeehhhh-HHHHHHHHHh---hc--------------CCCeE----------------------------
Confidence 77666778889999993 3333343332 10 11110
Q ss_pred HHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhH
Q psy7773 769 LRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIE 848 (1281)
Q Consensus 769 lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~ 848 (1281)
|++..+. ..+..+.+-+.++| |
T Consensus 386 -------------------ifvd~~~---------------------------~~a~~LtQEFiRIR-----~------- 407 (691)
T KOG0338|consen 386 -------------------IFVDPNK---------------------------DTAPKLTQEFIRIR-----P------- 407 (691)
T ss_pred -------------------EEeCCcc---------------------------ccchhhhHHHheec-----c-------
Confidence 0000000 00000000000000 0
Q ss_pred HHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHH
Q psy7773 849 EKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRG 928 (1281)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~ 928 (1281)
-+..-+-.+|..++..++ ..++|||++....+..|...|...|+++..|||+.++.+|.
T Consensus 408 -------------------~re~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRl 466 (691)
T KOG0338|consen 408 -------------------KREGDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRL 466 (691)
T ss_pred -------------------ccccccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHH
Confidence 001112234445555554 45699999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHH
Q psy7773 929 ELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILA 1008 (1281)
Q Consensus 929 ~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~ 1008 (1281)
..+..|.+...+ +||+|+++++|||+.+.-+||+|+.|-+...|++|+||..|.|..- +-..|+..+ |.+|+.
T Consensus 467 esL~kFk~~eid---vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaG--rsVtlvgE~--dRkllK 539 (691)
T KOG0338|consen 467 ESLEKFKKEEID---VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAG--RSVTLVGES--DRKLLK 539 (691)
T ss_pred HHHHHHHhccCC---EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCc--ceEEEeccc--cHHHHH
Confidence 999999987776 6999999999999999999999999999999999999999999743 344566655 666654
Q ss_pred HH
Q psy7773 1009 AA 1010 (1281)
Q Consensus 1009 ~~ 1010 (1281)
-.
T Consensus 540 ~i 541 (691)
T KOG0338|consen 540 EI 541 (691)
T ss_pred HH
Confidence 43
No 61
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.93 E-value=6.8e-24 Score=265.57 Aligned_cols=303 Identities=18% Similarity=0.209 Sum_probs=214.0
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHCCCCc
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWAPSAN 622 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~p~~~ 622 (1281)
..++|+|.+++.-++. +.+.+++.+||+|||+.+...+. . ..+.+|||+|. +++.++...+... +..
T Consensus 12 ~~fr~~Q~~~i~~il~----g~dvlv~~PTG~GKTl~y~lpal--~----~~g~~lVisPl~sL~~dq~~~l~~~--gi~ 79 (591)
T TIGR01389 12 DDFRPGQEEIISHVLD----GRDVLVVMPTGGGKSLCYQVPAL--L----LKGLTVVISPLISLMKDQVDQLRAA--GVA 79 (591)
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCccHhHHHHHHHH--H----cCCcEEEEcCCHHHHHHHHHHHHHc--CCc
Confidence 4799999999988773 66899999999999998754332 2 23678999996 5558888888775 455
Q ss_pred EEEEeCCHH--HHHHHHhhhccCCccEEEechHHHhhc--ccccccCceeEEEEeCCccccccch-------HHHHHHHh
Q psy7773 623 VVAYKGSPL--ARRALQGRMKNSKFNVLLTTYEFIIKD--KSVLSKIQWKCMIIDEGHRMKNHHC-------KLTQTLNT 691 (1281)
Q Consensus 623 ~~~~~g~~~--~r~~~~~~~~~~~~~vvItTye~l~~~--~~~l~~~~w~~vIvDEaHr~kn~~s-------~~~~~l~~ 691 (1281)
+..+++... ...........+..+++++|++.+... ...+....+.+|||||||++..... .+.. +..
T Consensus 80 ~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~-l~~ 158 (591)
T TIGR01389 80 AAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGS-LAE 158 (591)
T ss_pred EEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHH-HHH
Confidence 666665432 222333344567889999999998643 3345556889999999999864321 1122 222
Q ss_pred hhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHH
Q psy7773 692 FYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRR 771 (1281)
Q Consensus 692 ~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR 771 (1281)
.++....++||||+-.....++...+.+-.|..+.+ .|
T Consensus 159 ~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~------~~------------------------------------ 196 (591)
T TIGR01389 159 RFPQVPRIALTATADAETRQDIRELLRLADANEFIT------SF------------------------------------ 196 (591)
T ss_pred hCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec------CC------------------------------------
Confidence 234556899999986555444444333221111100 00
Q ss_pred hHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHH
Q psy7773 772 LKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKY 851 (1281)
Q Consensus 772 ~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~ 851 (1281)
..|.....+
T Consensus 197 -------~r~nl~~~v---------------------------------------------------------------- 205 (591)
T TIGR01389 197 -------DRPNLRFSV---------------------------------------------------------------- 205 (591)
T ss_pred -------CCCCcEEEE----------------------------------------------------------------
Confidence 000000000
Q ss_pred HhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHH
Q psy7773 852 CQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELL 931 (1281)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i 931 (1281)
.....+...|..+|... .+.++||||......+.+..+|...|+++..+||+++.++|..++
T Consensus 206 ----------------~~~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~ 267 (591)
T TIGR01389 206 ----------------VKKNNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQ 267 (591)
T ss_pred ----------------EeCCCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHH
Confidence 00112333344444432 256799999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEE
Q psy7773 932 RKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRV 993 (1281)
Q Consensus 932 ~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V 993 (1281)
+.|..+... +|++|.+.|.|||++++++||+||+|+|+..|.|++||++|.|+...+.+
T Consensus 268 ~~F~~g~~~---vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il 326 (591)
T TIGR01389 268 EDFLYDDVK---VMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAIL 326 (591)
T ss_pred HHHHcCCCc---EEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEE
Confidence 999986654 59999999999999999999999999999999999999999997766543
No 62
>PTZ00424 helicase 45; Provisional
Probab=99.92 E-value=5.1e-24 Score=256.03 Aligned_cols=320 Identities=18% Similarity=0.282 Sum_probs=211.3
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCC--C
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAP--S 620 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p--~ 620 (1281)
..|.|+|..++..++ ++.+.|+..+||+|||++++..+...+........+|||+|...| .|+...+..++. .
T Consensus 49 ~~~~~~Q~~ai~~i~----~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 124 (401)
T PTZ00424 49 EKPSAIQQRGIKPIL----DGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLK 124 (401)
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcC
Confidence 479999999998877 477889999999999998776665555433344579999998665 677777766653 3
Q ss_pred CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCccccccc--hHHHHHHHhhhccC
Q psy7773 621 ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNHH--CKLTQTLNTFYNSS 696 (1281)
Q Consensus 621 ~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~~--s~~~~~l~~~~~~~ 696 (1281)
..+....|....+..... .....+|+|+|++.+.... ..+..-.+++|||||||++.... ..+...+..+....
T Consensus 125 ~~~~~~~g~~~~~~~~~~--~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~ 202 (401)
T PTZ00424 125 VRCHACVGGTVVRDDINK--LKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDV 202 (401)
T ss_pred ceEEEEECCcCHHHHHHH--HcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCc
Confidence 344445555433332221 1244689999999876432 22333467899999999986433 34445555543456
Q ss_pred cEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHH
Q psy7773 697 HRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEV 776 (1281)
Q Consensus 697 ~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v 776 (1281)
+.+++|||+-. ...++.. .|+ ..|.... ... ..+
T Consensus 203 ~~i~~SAT~~~-~~~~~~~--~~~---------------~~~~~~~-----~~~-----------------------~~~ 236 (401)
T PTZ00424 203 QVALFSATMPN-EILELTT--KFM---------------RDPKRIL-----VKK-----------------------DEL 236 (401)
T ss_pred EEEEEEecCCH-HHHHHHH--HHc---------------CCCEEEE-----eCC-----------------------CCc
Confidence 78999999632 1111100 000 0000000 000 000
Q ss_pred hhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhc
Q psy7773 777 ESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIG 856 (1281)
Q Consensus 777 ~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 856 (1281)
.+.......+.+.
T Consensus 237 --~~~~~~~~~~~~~----------------------------------------------------------------- 249 (401)
T PTZ00424 237 --TLEGIRQFYVAVE----------------------------------------------------------------- 249 (401)
T ss_pred --ccCCceEEEEecC-----------------------------------------------------------------
Confidence 0000000000000
Q ss_pred CCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcC
Q psy7773 857 QNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNE 936 (1281)
Q Consensus 857 ~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~ 936 (1281)
....+...+..++... ...++||||.....++.+...|...++.+..+||+++..+|..+++.|++
T Consensus 250 ------------~~~~~~~~l~~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~ 315 (401)
T PTZ00424 250 ------------KEEWKFDTLCDLYETL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRS 315 (401)
T ss_pred ------------hHHHHHHHHHHHHHhc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 0001222233333221 34579999999999999999999999999999999999999999999998
Q ss_pred CCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCC
Q psy7773 937 PESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNS 1001 (1281)
Q Consensus 937 ~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~t 1001 (1281)
+... +|+||+++++|||++.+++||+||+|.++..|.|++||++|.|.. -.++.|++...
T Consensus 316 g~~~---vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~--G~~i~l~~~~~ 375 (401)
T PTZ00424 316 GSTR---VLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRK--GVAINFVTPDD 375 (401)
T ss_pred CCCC---EEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCC--ceEEEEEcHHH
Confidence 6655 599999999999999999999999999999999999999999865 44566676543
No 63
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=3.2e-23 Score=252.32 Aligned_cols=333 Identities=21% Similarity=0.301 Sum_probs=228.6
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHh-cCCC-CCEEEEeCCccH-HHHHHHHHHHCC
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEK-KKNL-GPYLVIVPLSTL-SNWVLEFEKWAP 619 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~-~~~~-~~~LIV~P~s~l-~~W~~E~~~~~p 619 (1281)
-..+.|.|..++.-++. +...|..+.||+|||+..+.-+...+.. .... .++||++|+..| .|-..++.++..
T Consensus 49 f~~pt~IQ~~~IP~~l~----g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~ 124 (513)
T COG0513 49 FEEPTPIQLAAIPLILA----GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGK 124 (513)
T ss_pred CCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHh
Confidence 34789999999988774 6788999999999999865554444432 2222 239999999877 667777776664
Q ss_pred ---CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCccccccc--hHHHHHHHhh
Q psy7773 620 ---SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNHH--CKLTQTLNTF 692 (1281)
Q Consensus 620 ---~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~~--s~~~~~l~~~ 692 (1281)
.+.++++.|........ ..... ..+|||+|+..+..+. ..+...+..++|+|||.+|.+.. ..+..++..+
T Consensus 125 ~~~~~~~~~i~GG~~~~~q~-~~l~~-~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~ 202 (513)
T COG0513 125 NLGGLRVAVVYGGVSIRKQI-EALKR-GVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKAL 202 (513)
T ss_pred hcCCccEEEEECCCCHHHHH-HHHhc-CCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhC
Confidence 45566666654444443 22323 4999999999998652 34555578899999999998653 4455666554
Q ss_pred hccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHh
Q psy7773 693 YNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRL 772 (1281)
Q Consensus 693 ~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~ 772 (1281)
-.....+++|||--. .+.++ . +.++
T Consensus 203 p~~~qtllfSAT~~~-~i~~l---~-----------------------------------------------~~~l---- 227 (513)
T COG0513 203 PPDRQTLLFSATMPD-DIREL---A-----------------------------------------------RRYL---- 227 (513)
T ss_pred CcccEEEEEecCCCH-HHHHH---H-----------------------------------------------HHHc----
Confidence 334677899999432 11111 1 1110
Q ss_pred HHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHH
Q psy7773 773 KKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYC 852 (1281)
Q Consensus 773 k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~ 852 (1281)
.......+ .... .... ... ..+.|+
T Consensus 228 --------~~p~~i~v--~~~~----------------------~~~~-------------~~~-i~q~~~--------- 252 (513)
T COG0513 228 --------NDPVEIEV--SVEK----------------------LERT-------------LKK-IKQFYL--------- 252 (513)
T ss_pred --------cCCcEEEE--cccc----------------------cccc-------------ccC-ceEEEE---------
Confidence 00101111 0000 0000 000 000000
Q ss_pred hhhcCCCccccCCccccc-cchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHH
Q psy7773 853 QHIGQNNTVVSGPDIYRT-SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELL 931 (1281)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~-s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i 931 (1281)
.+.. ..|+.+|..+|...... ++||||.....++.|...|...|+++..|||++++.+|.+++
T Consensus 253 --------------~v~~~~~k~~~L~~ll~~~~~~--~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l 316 (513)
T COG0513 253 --------------EVESEEEKLELLLKLLKDEDEG--RVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRAL 316 (513)
T ss_pred --------------EeCCHHHHHHHHHHHHhcCCCC--eEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHH
Confidence 0111 14888888888764433 699999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHHHH
Q psy7773 932 RKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAAR 1011 (1281)
Q Consensus 932 ~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~~~ 1011 (1281)
..|+++... +|++|+++++|||++..++||+||+|.++..|+||+||++|.|.+- ..+.|++. .-|...+....
T Consensus 317 ~~F~~g~~~---vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G--~ai~fv~~-~~e~~~l~~ie 390 (513)
T COG0513 317 EKFKDGELR---VLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKG--VAISFVTE-EEEVKKLKRIE 390 (513)
T ss_pred HHHHcCCCC---EEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCC--eEEEEeCc-HHHHHHHHHHH
Confidence 999986665 5999999999999999999999999999999999999999999544 56666765 22555554444
Q ss_pred HH
Q psy7773 1012 YK 1013 (1281)
Q Consensus 1012 ~K 1013 (1281)
..
T Consensus 391 ~~ 392 (513)
T COG0513 391 KR 392 (513)
T ss_pred HH
Confidence 43
No 64
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.92 E-value=8.3e-24 Score=263.39 Aligned_cols=309 Identities=17% Similarity=0.160 Sum_probs=209.3
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcc-HHHHHHHHHHHCCCC
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLST-LSNWVLEFEKWAPSA 621 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~-l~~W~~E~~~~~p~~ 621 (1281)
...+||+|.+++..++ .+.++|+..+||+|||+.....+.. ..+.+|||+|+.- +.++...+... ++
T Consensus 458 ~~sFRp~Q~eaI~aiL----~GrDVLVimPTGSGKSLcYQLPAL~------~~GiTLVISPLiSLmqDQV~~L~~~--GI 525 (1195)
T PLN03137 458 NHSFRPNQREIINATM----SGYDVFVLMPTGGGKSLTYQLPALI------CPGITLVISPLVSLIQDQIMNLLQA--NI 525 (1195)
T ss_pred CCCCCHHHHHHHHHHH----cCCCEEEEcCCCccHHHHHHHHHHH------cCCcEEEEeCHHHHHHHHHHHHHhC--CC
Confidence 3589999999998876 4778999999999999987554432 1368999999754 45455555443 45
Q ss_pred cEEEEeCCHHHH--HHHHhhh--ccCCccEEEechHHHhhcc---ccccc----CceeEEEEeCCccccccch------H
Q psy7773 622 NVVAYKGSPLAR--RALQGRM--KNSKFNVLLTTYEFIIKDK---SVLSK----IQWKCMIIDEGHRMKNHHC------K 684 (1281)
Q Consensus 622 ~~~~~~g~~~~r--~~~~~~~--~~~~~~vvItTye~l~~~~---~~l~~----~~w~~vIvDEaHr~kn~~s------~ 684 (1281)
....+.|..... ..+.... ..+.++++++|++.|.... ..+.. ..+.+|||||||++..... .
T Consensus 526 ~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr 605 (1195)
T PLN03137 526 PAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQ 605 (1195)
T ss_pred eEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHH
Confidence 555555543222 1112222 2367899999999986432 12221 2478999999999875321 1
Q ss_pred HHHHHHhhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhh
Q psy7773 685 LTQTLNTFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVL 764 (1281)
Q Consensus 685 ~~~~l~~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l 764 (1281)
....+...+....+++||||.-.....++...|.+..+..| ...|.+
T Consensus 606 ~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vf------r~Sf~R--------------------------- 652 (1195)
T PLN03137 606 GLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVF------RQSFNR--------------------------- 652 (1195)
T ss_pred HHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEe------ecccCc---------------------------
Confidence 11234444566778999999866655555554433222111 000000
Q ss_pred hHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccch
Q psy7773 765 RPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMF 844 (1281)
Q Consensus 765 ~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~ 844 (1281)
|.....++. -
T Consensus 653 ----------------pNL~y~Vv~--k---------------------------------------------------- 662 (1195)
T PLN03137 653 ----------------PNLWYSVVP--K---------------------------------------------------- 662 (1195)
T ss_pred ----------------cceEEEEec--c----------------------------------------------------
Confidence 110000000 0
Q ss_pred hhhHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCCh
Q psy7773 845 QNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKS 924 (1281)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~ 924 (1281)
....+..|..++... ..+...||||..+...+.|...|...|++...+||+++.
T Consensus 663 -------------------------~kk~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~ 716 (1195)
T PLN03137 663 -------------------------TKKCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDP 716 (1195)
T ss_pred -------------------------chhHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCH
Confidence 000011122222211 123468999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEE
Q psy7773 925 EDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLR 995 (1281)
Q Consensus 925 ~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~r 995 (1281)
.+|..+++.|..+... +|++|.++|+|||++++++||+||+|.++..|.|++|||+|.|+...+..|+
T Consensus 717 eeR~~vqe~F~~Gei~---VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 717 AQRAFVQKQWSKDEIN---IICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred HHHHHHHHHHhcCCCc---EEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 9999999999986655 5999999999999999999999999999999999999999999987766554
No 65
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.91 E-value=1.1e-22 Score=258.82 Aligned_cols=307 Identities=17% Similarity=0.188 Sum_probs=209.3
Q ss_pred CcccHHHHHHHHHHHHhhcCC--CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCCC
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNN--LNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAPS 620 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~--~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p~ 620 (1281)
.+|.|+|..++..+..-..++ .+.+++.+||+|||.+++..+...+.. ...+||+||+..| .|+...|.++++.
T Consensus 450 f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---g~qvlvLvPT~~LA~Q~~~~f~~~~~~ 526 (926)
T TIGR00580 450 FEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---GKQVAVLVPTTLLAQQHFETFKERFAN 526 (926)
T ss_pred CCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---CCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 368999999999988755433 467999999999999987665544433 2579999998777 8888889988765
Q ss_pred C--cEEEEeCCH--HHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccC
Q psy7773 621 A--NVVAYKGSP--LARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSS 696 (1281)
Q Consensus 621 ~--~~~~~~g~~--~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~ 696 (1281)
+ ++.++.|.. ..+.........+..+|||+|+..+.+. +.-.+..+|||||+|++.- .....+..+....
T Consensus 527 ~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~---v~f~~L~llVIDEahrfgv---~~~~~L~~~~~~~ 600 (926)
T TIGR00580 527 FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKD---VKFKDLGLLIIDEEQRFGV---KQKEKLKELRTSV 600 (926)
T ss_pred CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCC---CCcccCCEEEeecccccch---hHHHHHHhcCCCC
Confidence 4 455555542 2333333444556789999999766432 2223568999999999743 2344555554567
Q ss_pred cEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHH
Q psy7773 697 HRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEV 776 (1281)
Q Consensus 697 ~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v 776 (1281)
+.|+|||||+...+.. ++..+..+..+
T Consensus 601 ~vL~~SATpiprtl~~--~l~g~~d~s~I--------------------------------------------------- 627 (926)
T TIGR00580 601 DVLTLSATPIPRTLHM--SMSGIRDLSII--------------------------------------------------- 627 (926)
T ss_pred CEEEEecCCCHHHHHH--HHhcCCCcEEE---------------------------------------------------
Confidence 8999999997533211 11000000000
Q ss_pred hhcCCCce---EEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHh
Q psy7773 777 ESQLPEKV---EYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQ 853 (1281)
Q Consensus 777 ~~~lP~k~---~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~ 853 (1281)
..|+.. .....++.+
T Consensus 628 --~~~p~~R~~V~t~v~~~~------------------------------------------------------------ 645 (926)
T TIGR00580 628 --ATPPEDRLPVRTFVMEYD------------------------------------------------------------ 645 (926)
T ss_pred --ecCCCCccceEEEEEecC------------------------------------------------------------
Confidence 000000 000000000
Q ss_pred hhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHC--CCcEEEEeCCCChHHHHHHH
Q psy7773 854 HIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR--DFSYLRLDGTTKSEDRGELL 931 (1281)
Q Consensus 854 ~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~l~G~~~~~~R~~~i 931 (1281)
.+ .+...++..+ ..+.+|+|||+....++.+...|... ++++..+||.++..+|..++
T Consensus 646 ------------------~~-~i~~~i~~el-~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im 705 (926)
T TIGR00580 646 ------------------PE-LVREAIRREL-LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVM 705 (926)
T ss_pred ------------------HH-HHHHHHHHHH-HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHH
Confidence 00 0001111111 24678999999999999999999874 78999999999999999999
Q ss_pred HhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCC-CChhhhhhHhHhHHhhCCCCceEEEEEEeC
Q psy7773 932 RKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSD-WNPHQDLQAQDRAHRIGQKNEVRVLRLITV 999 (1281)
Q Consensus 932 ~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~-wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~ 999 (1281)
.+|.++..+ +||||.+.++|||++.+++||+++.+ +...++.|++||++|-|... ++|.|+..
T Consensus 706 ~~F~~Gk~~---ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g--~aill~~~ 769 (926)
T TIGR00580 706 LEFYKGEFQ---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKA--YAYLLYPH 769 (926)
T ss_pred HHHHcCCCC---EEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCe--EEEEEECC
Confidence 999987665 69999999999999999999999996 46678999999999988754 44555543
No 66
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.91 E-value=4.1e-22 Score=249.66 Aligned_cols=305 Identities=17% Similarity=0.235 Sum_probs=205.4
Q ss_pred cccHHHHHHHHHHHHhhcC--CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCC--
Q psy7773 545 KLKEYQIKGLEWMVSLYNN--NLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAP-- 619 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~--~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p-- 619 (1281)
+|.++|..++..++..... ..+.+|..+||+|||++++..+...+.. ...+||++|+..| .||...+.+|++
T Consensus 235 ~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~qvlilaPT~~LA~Q~~~~~~~l~~~~ 311 (630)
T TIGR00643 235 KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GYQVALMAPTEILAEQHYNSLRNLLAPL 311 (630)
T ss_pred CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEECCHHHHHHHHHHHHHHHhccc
Confidence 7999999999999876533 3467999999999999987666555532 3589999998776 899999999987
Q ss_pred CCcEEEEeCCHHH--HHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhc---
Q psy7773 620 SANVVAYKGSPLA--RRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYN--- 694 (1281)
Q Consensus 620 ~~~~~~~~g~~~~--r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~--- 694 (1281)
++++.++.|+... +.........+..+|+|+|+..+.... .-.+..+|||||+|++.-.. ...+.....
T Consensus 312 gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~---~~~~l~lvVIDEaH~fg~~q---r~~l~~~~~~~~ 385 (630)
T TIGR00643 312 GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKV---EFKRLALVIIDEQHRFGVEQ---RKKLREKGQGGF 385 (630)
T ss_pred CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccc---cccccceEEEechhhccHHH---HHHHHHhcccCC
Confidence 4778888876433 333444555678899999999886432 22357899999999975322 222332223
Q ss_pred cCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHH
Q psy7773 695 SSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKK 774 (1281)
Q Consensus 695 ~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~ 774 (1281)
.++.++|||||....+. +..+ +..+ .
T Consensus 386 ~~~~l~~SATp~prtl~----l~~~------~~l~--------------------------------------------~ 411 (630)
T TIGR00643 386 TPHVLVMSATPIPRTLA----LTVY------GDLD--------------------------------------------T 411 (630)
T ss_pred CCCEEEEeCCCCcHHHH----HHhc------CCcc--------------------------------------------e
Confidence 57889999999753221 1000 0000 0
Q ss_pred HHhhcCCCce--EEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHH
Q psy7773 775 EVESQLPEKV--EYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYC 852 (1281)
Q Consensus 775 ~v~~~lP~k~--~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~ 852 (1281)
.+...+|... .....+.-
T Consensus 412 ~~i~~~p~~r~~i~~~~~~~------------------------------------------------------------ 431 (630)
T TIGR00643 412 SIIDELPPGRKPITTVLIKH------------------------------------------------------------ 431 (630)
T ss_pred eeeccCCCCCCceEEEEeCc------------------------------------------------------------
Confidence 0000122110 00000000
Q ss_pred hhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechH--------HHHHHHHHHHHH--CCCcEEEEeCCC
Q psy7773 853 QHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMT--------QLMTILEDYFIW--RDFSYLRLDGTT 922 (1281)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~--------~~ld~L~~~L~~--~g~~~~~l~G~~ 922 (1281)
.....+...+.+....+++++|||... ..+..+...|.. .++++..+||.+
T Consensus 432 -------------------~~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m 492 (630)
T TIGR00643 432 -------------------DEKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRM 492 (630)
T ss_pred -------------------chHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCC
Confidence 000112222222334567788888654 233344444443 478899999999
Q ss_pred ChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCC-ChhhhhhHhHhHHhhCCCCceEEE
Q psy7773 923 KSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDW-NPHQDLQAQDRAHRIGQKNEVRVL 994 (1281)
Q Consensus 923 ~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~w-np~~~~Qa~gR~~RiGQ~k~V~V~ 994 (1281)
+..+|..+++.|.++... +|+||.+.++|||++.+++||+++++. +..++.|+.||++|-|....|.++
T Consensus 493 ~~~eR~~i~~~F~~g~~~---ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~ 562 (630)
T TIGR00643 493 KSDEKEAVMEEFREGEVD---ILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLV 562 (630)
T ss_pred CHHHHHHHHHHHHcCCCC---EEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEE
Confidence 999999999999987655 699999999999999999999999985 788999999999999876555433
No 67
>KOG0383|consensus
Probab=99.91 E-value=1.2e-24 Score=260.58 Aligned_cols=224 Identities=40% Similarity=0.626 Sum_probs=193.3
Q ss_pred CcccCCHHHHHHHHHHhCCCCCCCHHHHHHHhcccccccCccccccHHHHHHHHHHHHHHhhhhHHhhchhhhhhcCCCc
Q psy7773 1 TPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEK 80 (1281)
Q Consensus 1 TPiqN~~~eL~sll~fL~p~~l~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~dv~~~LP~k 80 (1281)
||.||++.+||++|+||.|+.|++...|...|... -....++.|+.++.|+|+||.|.||+..+|+|
T Consensus 473 tPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~-------------~~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~K 539 (696)
T KOG0383|consen 473 TPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDI-------------SCEEQIKKLHLLLCPHMLRRLKLDVLKPMPLK 539 (696)
T ss_pred CcchhhhHHhhhcccccCcccccchhhhhhhcchh-------------hHHHHHHhhccccCchhhhhhhhhhccCCCcc
Confidence 89999999999999999999999999998876432 23356789999999999999999999999999
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhhhhhccccccCCCCCCchHHHHHHHHHHHHHcCCCcCchhhHHHHhhhhcCCCcccc
Q psy7773 81 VEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNNTVVS 160 (1281)
Q Consensus 81 ~~~~v~v~ls~~Q~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~~~~hP~l~~~~~~~~~~~~~~~~~~~~ 160 (1281)
++.++.+.||+.|+.+|+.+..+....... ......++++++.||++|+||+++...+.. .......
T Consensus 540 te~i~~~~~~~~Q~~~yk~~~t~n~~~l~~-------~~~~~s~~n~~mel~K~~~hpy~~~~~e~~------~~~~~~~ 606 (696)
T KOG0383|consen 540 TELIGRVELSPCQKKYYKKILTRNWQGLLA-------GVHQYSLLNIVMELRKQCNHPYLSPLEEPL------EENGEYL 606 (696)
T ss_pred ceeEEEEecCHHHHHHHHHHHcCChHHHhh-------cchhHHHHHHHHHHHHhhcCcccCcccccc------ccchHHH
Confidence 999999999999999999998876544332 344567889999999999999998652111 0111112
Q ss_pred CCcccccCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceE
Q psy7773 161 GPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFI 240 (1281)
Q Consensus 161 ~~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~v 240 (1281)
...+++.|+|+..|..+++.+...|++|+||+|++.++++|+++|...| .|.+++|..+...|+..+++||.+++.-++
T Consensus 607 ~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~c 685 (696)
T KOG0383|consen 607 GSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFC 685 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceE
Confidence 2345778999999999999999999999999999999999999999999 999999999999999999999988888899
Q ss_pred EEEeccccccC
Q psy7773 241 FLLSTRAGGLG 251 (1281)
Q Consensus 241 ll~st~~~~~G 251 (1281)
||+||++||.|
T Consensus 686 fllstra~g~g 696 (696)
T KOG0383|consen 686 FLLSTRAGGLG 696 (696)
T ss_pred EEeecccccCC
Confidence 99999999987
No 68
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.90 E-value=2.5e-22 Score=253.03 Aligned_cols=303 Identities=17% Similarity=0.203 Sum_probs=204.7
Q ss_pred cccHHHHHHHHHHHHhhcC--CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCCC-
Q psy7773 545 KLKEYQIKGLEWMVSLYNN--NLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAPS- 620 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~--~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p~- 620 (1281)
+|+++|..++..+..-... ..+.+|..+||+|||++++..+...+. ....+||++|+..| .|+...|.+|++.
T Consensus 261 ~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~---~g~q~lilaPT~~LA~Q~~~~l~~l~~~~ 337 (681)
T PRK10917 261 ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE---AGYQAALMAPTEILAEQHYENLKKLLEPL 337 (681)
T ss_pred CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 6999999999988875433 236799999999999998866655443 23479999998777 8899999998865
Q ss_pred -CcEEEEeCCHHH--HHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCc
Q psy7773 621 -ANVVAYKGSPLA--RRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSH 697 (1281)
Q Consensus 621 -~~~~~~~g~~~~--r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~ 697 (1281)
+++.++.|+... +.........+..+|+|+|+..+.... .-.+..+|||||+|++.- .....+......++
T Consensus 338 ~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v---~~~~l~lvVIDE~Hrfg~---~qr~~l~~~~~~~~ 411 (681)
T PRK10917 338 GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDV---EFHNLGLVIIDEQHRFGV---EQRLALREKGENPH 411 (681)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccc---hhcccceEEEechhhhhH---HHHHHHHhcCCCCC
Confidence 677888887543 333444455678999999998885421 123568899999999842 22334443334578
Q ss_pred EEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHHh
Q psy7773 698 RVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVE 777 (1281)
Q Consensus 698 rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~ 777 (1281)
.++|||||+...+ ++..+- ... -.+.
T Consensus 412 iL~~SATp~prtl----~~~~~g------~~~--------------------------------------------~s~i 437 (681)
T PRK10917 412 VLVMTATPIPRTL----AMTAYG------DLD--------------------------------------------VSVI 437 (681)
T ss_pred EEEEeCCCCHHHH----HHHHcC------CCc--------------------------------------------eEEE
Confidence 9999999964321 110000 000 0000
Q ss_pred hcCCCce--EEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhh
Q psy7773 778 SQLPEKV--EYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHI 855 (1281)
Q Consensus 778 ~~lP~k~--~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~ 855 (1281)
..+|... .....+
T Consensus 438 ~~~p~~r~~i~~~~~----------------------------------------------------------------- 452 (681)
T PRK10917 438 DELPPGRKPITTVVI----------------------------------------------------------------- 452 (681)
T ss_pred ecCCCCCCCcEEEEe-----------------------------------------------------------------
Confidence 0111100 000000
Q ss_pred cCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechH--------HHHHHHHHHHHHC--CCcEEEEeCCCChH
Q psy7773 856 GQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMT--------QLMTILEDYFIWR--DFSYLRLDGTTKSE 925 (1281)
Q Consensus 856 ~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~--------~~ld~L~~~L~~~--g~~~~~l~G~~~~~ 925 (1281)
...+...+...+......+++++|||... ..+..+.+.|... ++++..+||.++..
T Consensus 453 --------------~~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~ 518 (681)
T PRK10917 453 --------------PDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPA 518 (681)
T ss_pred --------------CcccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHH
Confidence 00111122223333335678899999743 2334455555544 57899999999999
Q ss_pred HHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCC-ChhhhhhHhHhHHhhCCCCceE
Q psy7773 926 DRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDW-NPHQDLQAQDRAHRIGQKNEVR 992 (1281)
Q Consensus 926 ~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~w-np~~~~Qa~gR~~RiGQ~k~V~ 992 (1281)
+|..+++.|.++... +|+||.+.++|||++.+++||+++++. ...++.|+.||++|-|....|.
T Consensus 519 eR~~i~~~F~~g~~~---ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 583 (681)
T PRK10917 519 EKDAVMAAFKAGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCV 583 (681)
T ss_pred HHHHHHHHHHcCCCC---EEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEE
Confidence 999999999987655 699999999999999999999999985 5789999999999998765443
No 69
>KOG0342|consensus
Probab=99.90 E-value=1.1e-22 Score=227.33 Aligned_cols=314 Identities=21% Similarity=0.318 Sum_probs=216.1
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhc----CCCCCEEEEeCCccH-HHHH---HHHH
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKK----KNLGPYLVIVPLSTL-SNWV---LEFE 615 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~----~~~~~~LIV~P~s~l-~~W~---~E~~ 615 (1281)
.++.+-|...+.-++ .+...+.+.-||+|||+..+..+..++... .+.-.+|||||+..| .|-. .++.
T Consensus 103 ~~MT~VQ~~ti~pll----~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll 178 (543)
T KOG0342|consen 103 ETMTPVQQKTIPPLL----EGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELL 178 (543)
T ss_pred cchhHHHHhhcCccC----CCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHH
Confidence 467788887776555 366889999999999998665554444322 222358999999887 4444 4456
Q ss_pred HHCCCCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccC---ceeEEEEeCCcccc--ccchHHHHHHH
Q psy7773 616 KWAPSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKI---QWKCMIIDEGHRMK--NHHCKLTQTLN 690 (1281)
Q Consensus 616 ~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~---~w~~vIvDEaHr~k--n~~s~~~~~l~ 690 (1281)
++.++..+.+..|....+.. ...+.. ..+++|+|++.|..+...-..+ .-+++|+|||+|+. ++.-.+-+++.
T Consensus 179 ~~h~~~~v~~viGG~~~~~e-~~kl~k-~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~ 256 (543)
T KOG0342|consen 179 KYHESITVGIVIGGNNFSVE-ADKLVK-GCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIK 256 (543)
T ss_pred hhCCCcceEEEeCCccchHH-HHHhhc-cccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhcccHHHHHHHHH
Confidence 66666666665555433322 233333 8999999999998764332222 34789999999997 45556667776
Q ss_pred hhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHH
Q psy7773 691 TFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLR 770 (1281)
Q Consensus 691 ~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lR 770 (1281)
.+.+.+..+|+|||-- ..+.++. +-.+ .
T Consensus 257 ~lpk~rqt~LFSAT~~-~kV~~l~--------------------------------------------------~~~L-~ 284 (543)
T KOG0342|consen 257 ILPKQRQTLLFSATQP-SKVKDLA--------------------------------------------------RGAL-K 284 (543)
T ss_pred hccccceeeEeeCCCc-HHHHHHH--------------------------------------------------HHhh-c
Confidence 6655667799999931 1111110 0000 0
Q ss_pred HhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHH
Q psy7773 771 RLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEK 850 (1281)
Q Consensus 771 R~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~ 850 (1281)
. ....+.|. +.. . .. +
T Consensus 285 -----------~-d~~~v~~~--------------------d~~-------~--~~---T-------------------- 300 (543)
T KOG0342|consen 285 -----------R-DPVFVNVD--------------------DGG-------E--RE---T-------------------- 300 (543)
T ss_pred -----------C-CceEeecC--------------------CCC-------C--cc---h--------------------
Confidence 0 00000000 000 0 00 0
Q ss_pred HHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHH
Q psy7773 851 YCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGEL 930 (1281)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~ 930 (1281)
...+..+.-+.....++.+|..+|++.... .||||||....+..++.+.|....+++..|||..++..|..+
T Consensus 301 -------he~l~Qgyvv~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~ 372 (543)
T KOG0342|consen 301 -------HERLEQGYVVAPSDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTST 372 (543)
T ss_pred -------hhcccceEEeccccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchH
Confidence 000111111222345677888888876554 789999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCc
Q psy7773 931 LRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNE 990 (1281)
Q Consensus 931 i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~ 990 (1281)
..+|.+.++. +|+||+++++|+|++..|.||-||+|-+|.+|++|+||.+|-|-+-+
T Consensus 373 ~~~F~kaesg---IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~ 429 (543)
T KOG0342|consen 373 FFEFCKAESG---ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGK 429 (543)
T ss_pred HHHHhhcccc---eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCce
Confidence 9999988887 79999999999999999999999999999999999999999776544
No 70
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.90 E-value=4.1e-22 Score=258.89 Aligned_cols=305 Identities=16% Similarity=0.203 Sum_probs=205.9
Q ss_pred CcccHHHHHHHHHHHHhhcC--CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCCC
Q psy7773 544 GKLKEYQIKGLEWMVSLYNN--NLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAPS 620 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~--~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p~ 620 (1281)
..|.+.|..++.-++.-... +.+.+++.+||+|||.+++..+..... ....+||+||+..| .|....|.+++..
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---~g~qvlvLvPT~eLA~Q~~~~f~~~~~~ 675 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---NHKQVAVLVPTTLLAQQHYDNFRDRFAN 675 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHHHHHHHhhcc
Confidence 37999999999988775433 356899999999999987754433332 23589999998877 7788888876654
Q ss_pred --CcEEEEeCC--HHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccC
Q psy7773 621 --ANVVAYKGS--PLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSS 696 (1281)
Q Consensus 621 --~~~~~~~g~--~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~ 696 (1281)
+.+.++.|. ...+.........+..+|+|+|++.+... +.-.++.+|||||+|++... ....+..+....
T Consensus 676 ~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~---v~~~~L~lLVIDEahrfG~~---~~e~lk~l~~~~ 749 (1147)
T PRK10689 676 WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSD---VKWKDLGLLIVDEEHRFGVR---HKERIKAMRADV 749 (1147)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCC---CCHhhCCEEEEechhhcchh---HHHHHHhcCCCC
Confidence 445455543 33333333334456789999999877532 22236789999999998432 234455554567
Q ss_pred cEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHH
Q psy7773 697 HRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEV 776 (1281)
Q Consensus 697 ~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v 776 (1281)
+.|+|||||++..+.- ++..+.+|..+
T Consensus 750 qvLl~SATpiprtl~l--~~~gl~d~~~I--------------------------------------------------- 776 (1147)
T PRK10689 750 DILTLTATPIPRTLNM--AMSGMRDLSII--------------------------------------------------- 776 (1147)
T ss_pred cEEEEcCCCCHHHHHH--HHhhCCCcEEE---------------------------------------------------
Confidence 8899999997643211 11000011000
Q ss_pred hhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhc
Q psy7773 777 ESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIG 856 (1281)
Q Consensus 777 ~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 856 (1281)
..|+.....+ +..+. .
T Consensus 777 --~~~p~~r~~v----------------------------------------------~~~~~-~--------------- 792 (1147)
T PRK10689 777 --ATPPARRLAV----------------------------------------------KTFVR-E--------------- 792 (1147)
T ss_pred --ecCCCCCCCc----------------------------------------------eEEEE-e---------------
Confidence 0000000000 00000 0
Q ss_pred CCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHC--CCcEEEEeCCCChHHHHHHHHhh
Q psy7773 857 QNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR--DFSYLRLDGTTKSEDRGELLRKF 934 (1281)
Q Consensus 857 ~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~l~G~~~~~~R~~~i~~F 934 (1281)
. ........++..+. .+++|+|||+.+..++.+...|... ++++..+||.++..+|.+++.+|
T Consensus 793 -------------~-~~~~~k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~F 857 (1147)
T PRK10689 793 -------------Y-DSLVVREAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDF 857 (1147)
T ss_pred -------------c-CcHHHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 0 00001112222222 3568999999999999999999876 78999999999999999999999
Q ss_pred cCCCCCeEEEEEeccccccccCcccCCEEEEeCCC-CChhhhhhHhHhHHhhCCCCceE
Q psy7773 935 NEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSD-WNPHQDLQAQDRAHRIGQKNEVR 992 (1281)
Q Consensus 935 n~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~-wnp~~~~Qa~gR~~RiGQ~k~V~ 992 (1281)
.++..+ +|+||.++++|||++.+++||+.+++ ++..+|.|++||++|.|.+.-++
T Consensus 858 r~Gk~~---VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ 913 (1147)
T PRK10689 858 HHQRFN---VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAW 913 (1147)
T ss_pred HhcCCC---EEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEE
Confidence 987665 59999999999999999999988775 68889999999999998875443
No 71
>KOG0343|consensus
Probab=99.90 E-value=5.7e-23 Score=230.58 Aligned_cols=358 Identities=19% Similarity=0.215 Sum_probs=242.7
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHH-HHHHHHhcCC---CCCEEEEeCCccH-HHHHHHHHHHC-
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIAL-LTYLMEKKKN---LGPYLVIVPLSTL-SNWVLEFEKWA- 618 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~l-l~~l~~~~~~---~~~~LIV~P~s~l-~~W~~E~~~~~- 618 (1281)
.+.+.|..++...+. |...|-|.-||+|||+..+.. |..|+..+.. .-.+|||.|+.-| .|-..-+.+..
T Consensus 91 ~~teiQ~~~Ip~aL~----G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk 166 (758)
T KOG0343|consen 91 KMTEIQRDTIPMALQ----GHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGK 166 (758)
T ss_pred cHHHHHHhhcchhcc----CcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhh
Confidence 688899999887763 666777999999999985544 4444432211 1258999999887 45544454433
Q ss_pred -CCCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc---cccccCceeEEEEeCCccccc--cchHHHHHHHhh
Q psy7773 619 -PSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK---SVLSKIQWKCMIIDEGHRMKN--HHCKLTQTLNTF 692 (1281)
Q Consensus 619 -p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~---~~l~~~~w~~vIvDEaHr~kn--~~s~~~~~l~~~ 692 (1281)
..+..-++.|...... ...+....+|+|||++.|..+. ..|.--+..++|+|||.||.. +...+..++..+
T Consensus 167 ~h~fSaGLiiGG~~~k~---E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~l 243 (758)
T KOG0343|consen 167 HHDFSAGLIIGGKDVKF---ELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENL 243 (758)
T ss_pred ccccccceeecCchhHH---HHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhC
Confidence 2445545555544332 2233467899999999998874 445556788999999999974 455566777777
Q ss_pred hccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHh
Q psy7773 693 YNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRL 772 (1281)
Q Consensus 693 ~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~ 772 (1281)
.+.+..||+||||-. +..+|.-| ++-+|..
T Consensus 244 P~~RQTLLFSATqt~-svkdLaRL-sL~dP~~------------------------------------------------ 273 (758)
T KOG0343|consen 244 PKKRQTLLFSATQTK-SVKDLARL-SLKDPVY------------------------------------------------ 273 (758)
T ss_pred Chhheeeeeecccch-hHHHHHHh-hcCCCcE------------------------------------------------
Confidence 667888999999853 33333211 1111111
Q ss_pred HHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHH
Q psy7773 773 KKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYC 852 (1281)
Q Consensus 773 k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~ 852 (1281)
.-+... ........ |++
T Consensus 274 -------------vsvhe~---------------------------a~~atP~~-------L~Q---------------- 290 (758)
T KOG0343|consen 274 -------------VSVHEN---------------------------AVAATPSN-------LQQ---------------- 290 (758)
T ss_pred -------------EEEecc---------------------------ccccChhh-------hhh----------------
Confidence 111000 00000000 110
Q ss_pred hhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHC--CCcEEEEeCCCChHHHHHH
Q psy7773 853 QHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR--DFSYLRLDGTTKSEDRGEL 930 (1281)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~l~G~~~~~~R~~~ 930 (1281)
..-++....|+.+|..+++.+. ..|.|||......+.++...|... |++.+-|+|.+++..|..+
T Consensus 291 -----------~y~~v~l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev 357 (758)
T KOG0343|consen 291 -----------SYVIVPLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEV 357 (758)
T ss_pred -----------eEEEEehhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHH
Confidence 0112344568999999998754 456999999999999999988765 9999999999999999999
Q ss_pred HHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHHH
Q psy7773 931 LRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAA 1010 (1281)
Q Consensus 931 i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~~ 1010 (1281)
...|... ..++|+||+++++|||++.+|.||-||.|-+...|++|.||+.|++..-+..+|-. -|-+|.++.++
T Consensus 358 ~~~F~~~---~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~---psEeE~~l~~L 431 (758)
T KOG0343|consen 358 YKKFVRK---RAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLT---PSEEEAMLKKL 431 (758)
T ss_pred HHHHHHh---cceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEc---chhHHHHHHHH
Confidence 9999873 23579999999999999999999999999999999999999999998877655433 34568888887
Q ss_pred HHHHHHHHHHHhcCcCCCCCChhhHHHHHHHHhccC
Q psy7773 1011 RYKLNMDEKVIQAGMFDQKSTGSERHEFLQTILHQD 1046 (1281)
Q Consensus 1011 ~~K~~l~~~vi~~g~~~~~~~~~~~~~~l~~il~~~ 1046 (1281)
+.|. +.- +.++.++. .-.+....|+.||..+
T Consensus 432 q~k~-I~i---~~i~i~~~-k~~~i~~~l~~ll~~~ 462 (758)
T KOG0343|consen 432 QKKK-IPI---KEIKIDPE-KLTSIRNKLEALLAKD 462 (758)
T ss_pred HHcC-CCH---HhhccCHH-HhhhHHHHHHHHHhhC
Confidence 7764 221 12222211 1223555666776544
No 72
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.90 E-value=9.7e-22 Score=248.45 Aligned_cols=333 Identities=17% Similarity=0.174 Sum_probs=215.1
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHC-CCC
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWA-PSA 621 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~-p~~ 621 (1281)
..|++||.+++..++ .+.+.|++.+||+|||+.++..+...+.. .....+|||+|+.-| .|....+..+. .++
T Consensus 35 ~~p~~~Q~~ai~~il----~G~nvvv~apTGSGKTla~~LPiL~~l~~-~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i 109 (742)
T TIGR03817 35 HRPWQHQARAAELAH----AGRHVVVATGTASGKSLAYQLPVLSALAD-DPRATALYLAPTKALAADQLRAVRELTLRGV 109 (742)
T ss_pred CcCCHHHHHHHHHHH----CCCCEEEECCCCCcHHHHHHHHHHHHHhh-CCCcEEEEEcChHHHHHHHHHHHHHhccCCe
Confidence 479999999998776 57889999999999999976655544433 233579999998766 66777787775 357
Q ss_pred cEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--------cccccCceeEEEEeCCccccc-cchHHHHHHHhh
Q psy7773 622 NVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--------SVLSKIQWKCMIIDEGHRMKN-HHCKLTQTLNTF 692 (1281)
Q Consensus 622 ~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--------~~l~~~~w~~vIvDEaHr~kn-~~s~~~~~l~~~ 692 (1281)
.+.+|.|....... ... ....+|+|||++++.... ..+. +.++|||||||++.+ ..+.+...+..+
T Consensus 110 ~v~~~~Gdt~~~~r--~~i-~~~~~IivtTPd~L~~~~L~~~~~~~~~l~--~l~~vViDEah~~~g~fg~~~~~il~rL 184 (742)
T TIGR03817 110 RPATYDGDTPTEER--RWA-REHARYVLTNPDMLHRGILPSHARWARFLR--RLRYVVIDECHSYRGVFGSHVALVLRRL 184 (742)
T ss_pred EEEEEeCCCCHHHH--HHH-hcCCCEEEEChHHHHHhhccchhHHHHHHh--cCCEEEEeChhhccCccHHHHHHHHHHH
Confidence 78888887543322 111 234799999999985321 1122 468999999999965 233333333322
Q ss_pred ---h----ccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhh
Q psy7773 693 ---Y----NSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLR 765 (1281)
Q Consensus 693 ---~----~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 765 (1281)
. ..+..+++|||.- ++.++.. .+ +..|+.....
T Consensus 185 ~ri~~~~g~~~q~i~~SATi~--n~~~~~~---~l--------------~g~~~~~i~~--------------------- 224 (742)
T TIGR03817 185 RRLCARYGASPVFVLASATTA--DPAAAAS---RL--------------IGAPVVAVTE--------------------- 224 (742)
T ss_pred HHHHHhcCCCCEEEEEecCCC--CHHHHHH---HH--------------cCCCeEEECC---------------------
Confidence 1 2356789999942 3333221 11 1111100000
Q ss_pred HHHHHHhHHHHhhcCCCc-eEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccch
Q psy7773 766 PFLLRRLKKEVESQLPEK-VEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMF 844 (1281)
Q Consensus 766 ~~~lRR~k~~v~~~lP~k-~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~ 844 (1281)
..-|.. ....++.+.- +. . . ...+.. .|
T Consensus 225 ------------~~~~~~~~~~~~~~p~~------~~-~--------~----~~~~~~-----------~r--------- 253 (742)
T TIGR03817 225 ------------DGSPRGARTVALWEPPL------TE-L--------T----GENGAP-----------VR--------- 253 (742)
T ss_pred ------------CCCCcCceEEEEecCCc------cc-c--------c----cccccc-----------cc---------
Confidence 001111 1111111100 00 0 0 000000 00
Q ss_pred hhhHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHC--------CCcEE
Q psy7773 845 QNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR--------DFSYL 916 (1281)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~--------g~~~~ 916 (1281)
-.....+..+|..++ ..+.++||||+.+..++.|..+|... +.++.
T Consensus 254 ----------------------~~~~~~~~~~l~~l~----~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~ 307 (742)
T TIGR03817 254 ----------------------RSASAEAADLLADLV----AEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVA 307 (742)
T ss_pred ----------------------cchHHHHHHHHHHHH----HCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchh
Confidence 000112344444444 34779999999999999999887653 56778
Q ss_pred EEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEE
Q psy7773 917 RLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRL 996 (1281)
Q Consensus 917 ~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rl 996 (1281)
.++|+++.++|..+.+.|.++... +|+||+++++|||+.+.|+||+||.|-++..|.||+||++|.|+..- ++.+
T Consensus 308 ~~hgg~~~~eR~~ie~~f~~G~i~---vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v 382 (742)
T TIGR03817 308 AYRAGYLPEDRRELERALRDGELL---GVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLV 382 (742)
T ss_pred heecCCCHHHHHHHHHHHHcCCce---EEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEE
Confidence 899999999999999999986554 59999999999999999999999999999999999999999997643 4555
Q ss_pred EeCCCHHHHHHH
Q psy7773 997 ITVNSVEERILA 1008 (1281)
Q Consensus 997 i~~~tiEe~I~~ 1008 (1281)
++.+..|..++.
T Consensus 383 ~~~~~~d~~~~~ 394 (742)
T TIGR03817 383 ARDDPLDTYLVH 394 (742)
T ss_pred eCCChHHHHHHh
Confidence 666677766544
No 73
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.89 E-value=1.8e-21 Score=251.07 Aligned_cols=327 Identities=19% Similarity=0.184 Sum_probs=202.0
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHH-HHHHhcC-----CCCCEEEEeCCccH-HHHHHH---
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLT-YLMEKKK-----NLGPYLVIVPLSTL-SNWVLE--- 613 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~-~l~~~~~-----~~~~~LIV~P~s~l-~~W~~E--- 613 (1281)
+.|+|+|..++..+. .+.++|++.+||+|||++++..+. .+..... ....+|+|+|+..| .++...
T Consensus 31 ~~~tpiQ~~Ai~~il----~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 31 GTFTPPQRYAIPLIH----EGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 469999999998764 477999999999999999775544 3432211 12358999997655 555443
Q ss_pred ----HHHHC-------CCCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhccc--ccc--cCceeEEEEeCCccc
Q psy7773 614 ----FEKWA-------PSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKS--VLS--KIQWKCMIIDEGHRM 678 (1281)
Q Consensus 614 ----~~~~~-------p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~--~l~--~~~w~~vIvDEaHr~ 678 (1281)
+..++ |.+.+.+++|........ .......+|+|||++.|..... .+. -.+.++|||||+|.+
T Consensus 107 ~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~--~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l 184 (876)
T PRK13767 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQ--KMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSL 184 (876)
T ss_pred HHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHH--HHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhh
Confidence 33332 366778888875433221 1223467999999999853211 110 125688999999999
Q ss_pred cccc--hHHHHH---HHhhh-ccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHH
Q psy7773 679 KNHH--CKLTQT---LNTFY-NSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEE 752 (1281)
Q Consensus 679 kn~~--s~~~~~---l~~~~-~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~ 752 (1281)
.+.. ..+... +..+. ...++++||||+- ++.++.. |+.+..... ...+. ..
T Consensus 185 ~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~--~~~~va~---~L~~~~~~~-------~~r~~----~i------- 241 (876)
T PRK13767 185 AENKRGVHLSLSLERLEELAGGEFVRIGLSATIE--PLEEVAK---FLVGYEDDG-------EPRDC----EI------- 241 (876)
T ss_pred ccCccHHHHHHHHHHHHHhcCCCCeEEEEecccC--CHHHHHH---HhcCccccC-------CCCce----EE-------
Confidence 7532 222222 33332 3467899999962 3333322 221110000 00000 00
Q ss_pred HHHHHHHHHHhhhHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHH
Q psy7773 753 TILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIV 832 (1281)
Q Consensus 753 ~~~~~~~L~~~l~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 832 (1281)
+...........+.++.... + . .
T Consensus 242 -----------------------v~~~~~k~~~i~v~~p~~~l----~-----------~---------~---------- 264 (876)
T PRK13767 242 -----------------------VDARFVKPFDIKVISPVDDL----I-----------H---------T---------- 264 (876)
T ss_pred -----------------------EccCCCccceEEEeccCccc----c-----------c---------c----------
Confidence 00000000000111110000 0 0 0
Q ss_pred HHHHhcCCccchhhhHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHC-
Q psy7773 833 QLRKLCNHPFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR- 911 (1281)
Q Consensus 833 ~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~- 911 (1281)
........+...|..+...++++||||+.+..++.+...|...
T Consensus 265 ------------------------------------~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~ 308 (876)
T PRK13767 265 ------------------------------------PAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRF 308 (876)
T ss_pred ------------------------------------ccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhc
Confidence 0000011122233333345678999999999999999888762
Q ss_pred -----CCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhh-
Q psy7773 912 -----DFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRI- 985 (1281)
Q Consensus 912 -----g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~Ri- 985 (1281)
+..+..+||+++.++|..+.+.|+++... +|+||.++++|||++.+|+||+|++|.++..|+||+||++|.
T Consensus 309 ~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~---vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~ 385 (876)
T PRK13767 309 PEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELK---VVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRL 385 (876)
T ss_pred hhhccccceeeeeCCCCHHHHHHHHHHHHcCCCe---EEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCC
Confidence 46788999999999999999999986554 599999999999999999999999999999999999999976
Q ss_pred CCCCceEEEE
Q psy7773 986 GQKNEVRVLR 995 (1281)
Q Consensus 986 GQ~k~V~V~r 995 (1281)
|......++-
T Consensus 386 g~~~~g~ii~ 395 (876)
T PRK13767 386 GEVSKGRIIV 395 (876)
T ss_pred CCCCcEEEEE
Confidence 4445555554
No 74
>KOG0345|consensus
Probab=99.89 E-value=1.7e-21 Score=215.91 Aligned_cols=317 Identities=18% Similarity=0.284 Sum_probs=221.6
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhc-CCC--C--CEEEEeCCccHHHH----HHHH
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKK-KNL--G--PYLVIVPLSTLSNW----VLEF 614 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~-~~~--~--~~LIV~P~s~l~~W----~~E~ 614 (1281)
....|-|..++..++. +....+-..||+|||+..+.-+...+.+. ... + ..|||.|+.-|.-. ...|
T Consensus 27 ~~mTpVQa~tIPlll~----~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F 102 (567)
T KOG0345|consen 27 EKMTPVQAATIPLLLK----NKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPF 102 (567)
T ss_pred cccCHHHHhhhHHHhc----CCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHH
Confidence 4788999999988774 66778888999999999887777666332 222 2 46999998777333 3345
Q ss_pred HHHCCCCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhc----ccccccCceeEEEEeCCccccc--cchHHHHH
Q psy7773 615 EKWAPSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKD----KSVLSKIQWKCMIIDEGHRMKN--HHCKLTQT 688 (1281)
Q Consensus 615 ~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~----~~~l~~~~w~~vIvDEaHr~kn--~~s~~~~~ 688 (1281)
..+.|++++..+.|.......+. .+.....+|+|+|++.|..- ...++.-...++|+|||+|+.. +...+..+
T Consensus 103 ~~~l~~l~~~l~vGG~~v~~Di~-~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~I 181 (567)
T KOG0345|consen 103 LEHLPNLNCELLVGGRSVEEDIK-TFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTI 181 (567)
T ss_pred HHhhhccceEEEecCccHHHHHH-HHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcccHHHHHHHH
Confidence 56678999999999865554433 34456789999999987543 3335544678999999999975 44555666
Q ss_pred HHhhhccCcEE-EeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHH
Q psy7773 689 LNTFYNSSHRV-LLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPF 767 (1281)
Q Consensus 689 l~~~~~~~~rl-lLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 767 (1281)
|..+ +..+|- |+|||-.+. ..+ |.. .
T Consensus 182 Ls~L-PKQRRTGLFSATq~~~-v~d---L~r------------------------------------------------a 208 (567)
T KOG0345|consen 182 LSFL-PKQRRTGLFSATQTQE-VED---LAR------------------------------------------------A 208 (567)
T ss_pred HHhc-ccccccccccchhhHH-HHH---HHH------------------------------------------------h
Confidence 6655 555554 689983211 111 100 0
Q ss_pred HHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhh
Q psy7773 768 LLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNI 847 (1281)
Q Consensus 768 ~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~ 847 (1281)
.|-..+...|... ... . .|.
T Consensus 209 -----------GLRNpv~V~V~~k-------------------------~~~--~-----------------tPS----- 228 (567)
T KOG0345|consen 209 -----------GLRNPVRVSVKEK-------------------------SKS--A-----------------TPS----- 228 (567)
T ss_pred -----------hccCceeeeeccc-------------------------ccc--c-----------------Cch-----
Confidence 0111111111000 000 0 000
Q ss_pred HHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHC--CCcEEEEeCCCChH
Q psy7773 848 EEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR--DFSYLRLDGTTKSE 925 (1281)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~l~G~~~~~ 925 (1281)
......-.+.+.-|+..|..+|.. ....|+|||.......++....|... ..+++-+||.++..
T Consensus 229 ------------~L~~~Y~v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~ 294 (567)
T KOG0345|consen 229 ------------SLALEYLVCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQK 294 (567)
T ss_pred ------------hhcceeeEecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcch
Confidence 000001123345688888888876 45678999999999999988888654 78899999999999
Q ss_pred HHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEE
Q psy7773 926 DRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLR 995 (1281)
Q Consensus 926 ~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~r 995 (1281)
.|..++..|.+..+. +|+||+++++|||+++.|.||.||||-+|..+.+|.||+.|.|..-...||-
T Consensus 295 ~R~k~~~~F~~~~~~---vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl 361 (567)
T KOG0345|consen 295 ARAKVLEAFRKLSNG---VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFL 361 (567)
T ss_pred hHHHHHHHHHhccCc---eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEe
Confidence 999999999874444 6999999999999999999999999999999999999999999877655543
No 75
>KOG0340|consensus
Probab=99.89 E-value=7.4e-22 Score=211.60 Aligned_cols=325 Identities=17% Similarity=0.221 Sum_probs=228.4
Q ss_pred ccccccccCcccccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-H
Q psy7773 530 YHEKVTEQASIMVNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-S 608 (1281)
Q Consensus 530 ~~~~~~~~p~~~~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~ 608 (1281)
+.+.+.+|...+.-.++.|.|..++..++. |.+||-+.-||+|||.....-+..-+...+..--.||++|+.-+ .
T Consensus 14 l~~Wlve~l~~l~i~~pTpiQ~~cIpkILe----Grdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~ 89 (442)
T KOG0340|consen 14 LSPWLVEQLKALGIKKPTPIQQACIPKILE----GRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELAL 89 (442)
T ss_pred ccHHHHHHHHHhcCCCCCchHhhhhHHHhc----ccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHH
Confidence 334445555555556899999999999885 88899999999999988555554444444444467999999877 5
Q ss_pred HHHHHHHHHC--CCCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhccc-c-----cccCceeEEEEeCCccccc
Q psy7773 609 NWVLEFEKWA--PSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKS-V-----LSKIQWKCMIIDEGHRMKN 680 (1281)
Q Consensus 609 ~W~~E~~~~~--p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~-~-----l~~~~w~~vIvDEaHr~kn 680 (1281)
|....|.... -++++.++.|..+.- .+......+.+|||+|++.+..+.. . +...+..++|+|||.++.+
T Consensus 90 QiaEQF~alGk~l~lK~~vivGG~d~i--~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~ 167 (442)
T KOG0340|consen 90 QIAEQFIALGKLLNLKVSVIVGGTDMI--MQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLA 167 (442)
T ss_pred HHHHHHHHhcccccceEEEEEccHHHh--hhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhc
Confidence 5555554433 356778888775443 3344456789999999999866422 1 1222567999999999986
Q ss_pred cchHHHHHHHhhh----ccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHH
Q psy7773 681 HHCKLTQTLNTFY----NSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILI 756 (1281)
Q Consensus 681 ~~s~~~~~l~~~~----~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~ 756 (1281)
.. +...|..++ ..+..++||||- .+++.++ +..|....
T Consensus 168 ~~--f~d~L~~i~e~lP~~RQtLlfSATi-td~i~ql---------------------~~~~i~k~-------------- 209 (442)
T KOG0340|consen 168 GC--FPDILEGIEECLPKPRQTLLFSATI-TDTIKQL---------------------FGCPITKS-------------- 209 (442)
T ss_pred cc--hhhHHhhhhccCCCccceEEEEeeh-hhHHHHh---------------------hcCCcccc--------------
Confidence 53 223333222 345779999993 2222221 11111100
Q ss_pred HHHHHHhhhHHHHHHhHHHHhhcCCCceEEEEEc-CCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHH
Q psy7773 757 IRRLHKVLRPFLLRRLKKEVESQLPEKVEYIIKC-DMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLR 835 (1281)
Q Consensus 757 ~~~L~~~l~~~~lRR~k~~v~~~lP~k~~~~v~~-~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr 835 (1281)
..+.+.. +-.+.-..||
T Consensus 210 ---------------------------~a~~~e~~~~vstvetL~----------------------------------- 227 (442)
T KOG0340|consen 210 ---------------------------IAFELEVIDGVSTVETLY----------------------------------- 227 (442)
T ss_pred ---------------------------cceEEeccCCCCchhhhh-----------------------------------
Confidence 0000000 0000000011
Q ss_pred HhcCCccchhhhHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhh-cCCeEEEEechHHHHHHHHHHHHHCCCc
Q psy7773 836 KLCNHPFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKE-TKHRVLMFCQMTQLMTILEDYFIWRDFS 914 (1281)
Q Consensus 836 k~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~-~~~kvLIFsq~~~~ld~L~~~L~~~g~~ 914 (1281)
....++...+|-..|..+|..+.+ .+..++||++.+....+|.-.|...++.
T Consensus 228 ---------------------------q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r 280 (442)
T KOG0340|consen 228 ---------------------------QGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVR 280 (442)
T ss_pred ---------------------------hheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhcee
Confidence 111223345688889999998877 6778999999999999999999999999
Q ss_pred EEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCc
Q psy7773 915 YLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNE 990 (1281)
Q Consensus 915 ~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~ 990 (1281)
+..+|+.+++.+|..++.+|+.+... +|++|+++++|||+++.+.||+||.|-.|..|++|.||..|.|..-.
T Consensus 281 ~~~lHs~m~Q~eR~~aLsrFrs~~~~---iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~ 353 (442)
T KOG0340|consen 281 VVSLHSQMPQKERLAALSRFRSNAAR---ILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGM 353 (442)
T ss_pred eeehhhcchHHHHHHHHHHHhhcCcc---EEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcc
Confidence 99999999999999999999985444 59999999999999999999999999999999999999999998765
No 76
>KOG0333|consensus
Probab=99.88 E-value=2e-21 Score=217.55 Aligned_cols=342 Identities=19% Similarity=0.229 Sum_probs=227.0
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHh--------cCCCC-CEEEEeCCccH-HHHHHHH
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEK--------KKNLG-PYLVIVPLSTL-SNWVLEF 614 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~--------~~~~~-~~LIV~P~s~l-~~W~~E~ 614 (1281)
.+.|.|..++.-++ .+.+.|...|+|+|||...+.-|.-.+.. ...-| ..+|++|+..| .|...|-
T Consensus 267 eptpIqR~aipl~l----Q~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt 342 (673)
T KOG0333|consen 267 EPTPIQRQAIPLGL----QNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET 342 (673)
T ss_pred CCchHHHhhccchh----ccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH
Confidence 67889999888555 46778999999999996533222222211 11223 36999998877 6667777
Q ss_pred HHHCC--CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhccc--ccccCceeEEEEeCCcccc--ccchHHHHH
Q psy7773 615 EKWAP--SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKS--VLSKIQWKCMIIDEGHRMK--NHHCKLTQT 688 (1281)
Q Consensus 615 ~~~~p--~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~--~l~~~~w~~vIvDEaHr~k--n~~s~~~~~ 688 (1281)
.+|.. +++++...|.-.... ++......++++|.|+..|..+.. +|-..+-.+||+|||.+|- ++......+
T Consensus 343 ~kf~~~lg~r~vsvigg~s~EE--q~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~i 420 (673)
T KOG0333|consen 343 NKFGKPLGIRTVSVIGGLSFEE--QGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKI 420 (673)
T ss_pred HHhcccccceEEEEecccchhh--hhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHH
Confidence 77763 355666655432221 122234678999999999987643 3444477899999999996 444555555
Q ss_pred HHhhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHH
Q psy7773 689 LNTFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFL 768 (1281)
Q Consensus 689 l~~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 768 (1281)
|..+ |..|.- | +.+++..| .++ ...|
T Consensus 421 L~~m------------Pssn~k-----------~----~tde~~~~-----------------------~~~---~~~~- 446 (673)
T KOG0333|consen 421 LEQM------------PSSNAK-----------P----DTDEKEGE-----------------------ERV---RKNF- 446 (673)
T ss_pred HHhC------------CccccC-----------C----CccchhhH-----------------------HHH---Hhhc-
Confidence 5443 332211 0 00011000 000 0000
Q ss_pred HHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhH
Q psy7773 769 LRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIE 848 (1281)
Q Consensus 769 lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~ 848 (1281)
...---.........|++.-..+-..++.+.+....++.... +|.
T Consensus 447 --------~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~---------------------~~r------ 491 (673)
T KOG0333|consen 447 --------SSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKP---------------------TPR------ 491 (673)
T ss_pred --------ccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCC---------------------ccc------
Confidence 000001223344455666655555555544443332221110 111
Q ss_pred HHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHH
Q psy7773 849 EKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRG 928 (1281)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~ 928 (1281)
+......+..+.|+..|..+|.... ...+|||.+....++.|++.|...||++++|||+-++++|.
T Consensus 492 ------------veQ~v~m~~ed~k~kkL~eil~~~~--~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe 557 (673)
T KOG0333|consen 492 ------------VEQKVEMVSEDEKRKKLIEILESNF--DPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRE 557 (673)
T ss_pred ------------hheEEEEecchHHHHHHHHHHHhCC--CCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHH
Confidence 0111233456789999999998873 44599999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCC
Q psy7773 929 ELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVN 1000 (1281)
Q Consensus 929 ~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~ 1000 (1281)
.++..|..+..+ +|++|+++|+|||++.+.+||+||..-+...|.+||||++|.|+.-.+ .-|+|..
T Consensus 558 ~aL~~fr~~t~d---IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gta--iSflt~~ 624 (673)
T KOG0333|consen 558 NALADFREGTGD---ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTA--ISFLTPA 624 (673)
T ss_pred HHHHHHHhcCCC---EEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCcee--EEEeccc
Confidence 999999997777 699999999999999999999999999999999999999999997654 3444443
No 77
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.88 E-value=7.3e-21 Score=246.34 Aligned_cols=356 Identities=16% Similarity=0.211 Sum_probs=206.1
Q ss_pred CcccHHHHHHHHHHHHhhc-CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc-cHHHHHHHHHHHCCCC
Q psy7773 544 GKLKEYQIKGLEWMVSLYN-NNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS-TLSNWVLEFEKWAPSA 621 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~-~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s-~l~~W~~E~~~~~p~~ 621 (1281)
..||+||.+++..+...+. ...+++|++.||+|||+++++++..++.. +..+++|||||.. ++.||..+|..+.+..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~-~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKA-KRFRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhc-CccCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 4799999999988776554 34578999999999999999998887643 4457999999965 5599999999875322
Q ss_pred c--EEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhccc-------ccccCceeEEEEeCCccccccc----------
Q psy7773 622 N--VVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKS-------VLSKIQWKCMIIDEGHRMKNHH---------- 682 (1281)
Q Consensus 622 ~--~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~-------~l~~~~w~~vIvDEaHr~kn~~---------- 682 (1281)
. +....+.. .+..........|+|+|+..+.+... .+..-.+++||||||||.....
T Consensus 491 ~~~~~~i~~i~----~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~ 566 (1123)
T PRK11448 491 DQTFASIYDIK----GLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQF 566 (1123)
T ss_pred ccchhhhhchh----hhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhcc
Confidence 2 11111111 11111223457899999999865421 1233478999999999963110
Q ss_pred ------hHHHHHHHhhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHH
Q psy7773 683 ------CKLTQTLNTFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILI 756 (1281)
Q Consensus 683 ------s~~~~~l~~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~ 756 (1281)
...++.+..++. ..+|+|||||..++. + .|+.|+... +
T Consensus 567 ~~~~~~~~~yr~iL~yFd-A~~IGLTATP~r~t~-~---------------------~FG~pv~~Y------s------- 610 (1123)
T PRK11448 567 RDQLDYVSKYRRVLDYFD-AVKIGLTATPALHTT-E---------------------IFGEPVYTY------S------- 610 (1123)
T ss_pred chhhhHHHHHHHHHhhcC-ccEEEEecCCccchh-H---------------------HhCCeeEEe------e-------
Confidence 122333334433 588999999974321 1 111111000 0
Q ss_pred HHHHHHhh-hHHHHHHhHHHHhhcCCCceEEEEE----cCCC-HHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHH
Q psy7773 757 IRRLHKVL-RPFLLRRLKKEVESQLPEKVEYIIK----CDMS-GLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNT 830 (1281)
Q Consensus 757 ~~~L~~~l-~~~~lRR~k~~v~~~lP~k~~~~v~----~~ls-~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (1281)
+...+ ..+++. ..|+....... +..+ ..+...|+..... ... .... ..+.-.
T Consensus 611 ---l~eAI~DG~Lv~--------~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~----i~~----~~l~---d~~~~~ 668 (1123)
T PRK11448 611 ---YREAVIDGYLID--------HEPPIRIETRLSQEGIHFEKGEEVEVINTQTGE----IDL----ATLE---DEVDFE 668 (1123)
T ss_pred ---HHHHHhcCCccc--------CcCCEEEEEEeccccccccccchhhhcchhhhh----hhh----ccCc---HHHhhh
Confidence 00000 011100 01222111100 0000 0011111111000 000 0000 000000
Q ss_pred HHHH-HHhcCCccchhhhHHHHHhhhcCCCccccCCccccccchHHHH-HHHhhhhhh-cCCeEEEEechHHHHHHHHHH
Q psy7773 831 IVQL-RKLCNHPFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELL-DRILPKFKE-TKHRVLMFCQMTQLMTILEDY 907 (1281)
Q Consensus 831 l~~L-rk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L-~~lL~~~~~-~~~kvLIFsq~~~~ld~L~~~ 907 (1281)
...+ +.+.+ ......+ ..++..+.. .+.|+||||.....++.+.+.
T Consensus 669 ~~~~~~~vi~-------------------------------~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~ 717 (1123)
T PRK11448 669 VEDFNRRVIT-------------------------------ESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRL 717 (1123)
T ss_pred HHHHHHHHhh-------------------------------HHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHH
Confidence 0000 00000 0011111 122222211 236899999999999988877
Q ss_pred HHHC------CC---cEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhH
Q psy7773 908 FIWR------DF---SYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQA 978 (1281)
Q Consensus 908 L~~~------g~---~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa 978 (1281)
|... ++ .+..++|+++ ++..++++|.++..+ .+|+|++..++|+|++.+++||++.++-++..|.|+
T Consensus 718 L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p--~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~Qm 793 (1123)
T PRK11448 718 LKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLP--NIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQM 793 (1123)
T ss_pred HHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCC--eEEEEecccccCCCcccccEEEEecCCCCHHHHHHH
Confidence 6542 22 4567999986 678899999874432 468999999999999999999999999999999999
Q ss_pred hHhHHhhCC---CCceEEEEEE
Q psy7773 979 QDRAHRIGQ---KNEVRVLRLI 997 (1281)
Q Consensus 979 ~gR~~RiGQ---~k~V~V~rli 997 (1281)
+||+.|..- |....||.++
T Consensus 794 IGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 794 LGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred HhhhccCCccCCCceEEEEehH
Confidence 999999854 5557888765
No 78
>KOG0350|consensus
Probab=99.88 E-value=6.7e-22 Score=220.31 Aligned_cols=361 Identities=16% Similarity=0.197 Sum_probs=215.1
Q ss_pred cCcccHHHHHHHHHHHHhhcC-----CCCeEEecCCCCCHHHHHHHHHHHHHHhc-CCCCCEEEEeCCccH-HHHHHHHH
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNN-----NLNGILADEMGLGKTVQTIALLTYLMEKK-KNLGPYLVIVPLSTL-SNWVLEFE 615 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~-----~~~gILademGlGKTi~ai~ll~~l~~~~-~~~~~~LIV~P~s~l-~~W~~E~~ 615 (1281)
...++|-|...+.|++.-.+. ++...++.+||+|||+....-|..++..+ -.+-++|||+|...| .|-...|.
T Consensus 157 is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~ 236 (620)
T KOG0350|consen 157 ISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFK 236 (620)
T ss_pred cccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHH
Confidence 458999999999999876552 23346889999999999555555544333 344589999998777 88899999
Q ss_pred HHCCCC--cEEEEeCCHHHHHHH---HhhhccCCccEEEechHHHhhcccccccC---ceeEEEEeCCccccccchHHHH
Q psy7773 616 KWAPSA--NVVAYKGSPLARRAL---QGRMKNSKFNVLLTTYEFIIKDKSVLSKI---QWKCMIIDEGHRMKNHHCKLTQ 687 (1281)
Q Consensus 616 ~~~p~~--~~~~~~g~~~~r~~~---~~~~~~~~~~vvItTye~l~~~~~~l~~~---~w~~vIvDEaHr~kn~~s~~~~ 687 (1281)
+|+++. .|+...|....+... .........||+|+|++.|..+...-..+ +..++|||||+||.+...+-|-
T Consensus 237 ~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl 316 (620)
T KOG0350|consen 237 RLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWL 316 (620)
T ss_pred HhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHH
Confidence 999754 455566655444332 22333456799999999999886643333 6789999999999876544332
Q ss_pred H-HHhhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhH
Q psy7773 688 T-LNTFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRP 766 (1281)
Q Consensus 688 ~-l~~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 766 (1281)
- +..+++...++.+. ..++.+..-..|..+... ...+..+ ...|.+++.+
T Consensus 317 ~~v~~~~~~~k~~~~~--------~nii~~~~~~~pt~~~e~---~t~~~~~------------------~~~l~kL~~s 367 (620)
T KOG0350|consen 317 DTVMSLCKTMKRVACL--------DNIIRQRQAPQPTVLSEL---LTKLGKL------------------YPPLWKLVFS 367 (620)
T ss_pred HHHHHHhCCchhhcCh--------hhhhhhcccCCchhhHHH---HhhcCCc------------------CchhHhhhcc
Confidence 1 11222333222211 111111110111110000 0000000 0001111111
Q ss_pred HHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhh
Q psy7773 767 FLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQN 846 (1281)
Q Consensus 767 ~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~ 846 (1281)
-.|- +.|.+ +..|+ .++|-++-.
T Consensus 368 atLs--------qdP~K-----------------------------------------------l~~l~--l~~Prl~~v 390 (620)
T KOG0350|consen 368 ATLS--------QDPSK-----------------------------------------------LKDLT--LHIPRLFHV 390 (620)
T ss_pred hhhh--------cChHH-----------------------------------------------Hhhhh--cCCCceEEe
Confidence 1110 11110 00010 122221110
Q ss_pred hHHHHHhhhcCCCccccCCcccccc--chHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHH----HCCCcEEEEeC
Q psy7773 847 IEEKYCQHIGQNNTVVSGPDIYRTS--GKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFI----WRDFSYLRLDG 920 (1281)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~s--~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~----~~g~~~~~l~G 920 (1281)
... +...+.... .... ..+-.+ -|-..+..++.. ....++|+|+........|...|. ....++..+.|
T Consensus 391 ~~~-~~~ryslp~-~l~~-~~vv~~~~~kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~ 465 (620)
T KOG0350|consen 391 SKP-LIGRYSLPS-SLSH-RLVVTEPKFKPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTG 465 (620)
T ss_pred ecc-cceeeecCh-hhhh-ceeecccccchHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhh
Confidence 000 000000000 0000 001111 233344445544 345679999999998888777776 34566777999
Q ss_pred CCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeC
Q psy7773 921 TTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITV 999 (1281)
Q Consensus 921 ~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~ 999 (1281)
+.+...|.+.+.+|+.++.. +|||++++++|||+.+.+.||+||+|-....|++|+||..|.||.- ++|.++..
T Consensus 466 ~l~~k~r~k~l~~f~~g~i~---vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G--~a~tll~~ 539 (620)
T KOG0350|consen 466 QLNGKRRYKMLEKFAKGDIN---VLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDG--YAITLLDK 539 (620)
T ss_pred hhhHHHHHHHHHHHhcCCce---EEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCc--eEEEeecc
Confidence 99999999999999997665 5999999999999999999999999999999999999999999975 55566554
No 79
>KOG0328|consensus
Probab=99.87 E-value=1.9e-21 Score=201.80 Aligned_cols=318 Identities=17% Similarity=0.251 Sum_probs=222.6
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHH-HHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCCCCc
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQ-TIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAPSAN 622 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~-ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p~~~ 622 (1281)
++...|..++..++ ++.+.|.-...|+|||.+ +|+++..+- -....--+||+.|+..| .|-+.-+.......+
T Consensus 49 kPS~IQqrAi~~Il----kGrdViaQaqSGTGKTa~~si~vlq~~d-~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mn 123 (400)
T KOG0328|consen 49 KPSAIQQRAIPQIL----KGRDVIAQAQSGTGKTATFSISVLQSLD-ISVRETQALILSPTRELAVQIQKVILALGDYMN 123 (400)
T ss_pred CchHHHhhhhhhhh----cccceEEEecCCCCceEEEEeeeeeecc-cccceeeEEEecChHHHHHHHHHHHHHhccccc
Confidence 56678899888777 488899999999999987 555554332 11122368999998877 566666666654444
Q ss_pred --EEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhc--ccccccCceeEEEEeCCccccc--cchHHHHHHHhhhccC
Q psy7773 623 --VVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKD--KSVLSKIQWKCMIIDEGHRMKN--HHCKLTQTLNTFYNSS 696 (1281)
Q Consensus 623 --~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~--~~~l~~~~w~~vIvDEaHr~kn--~~s~~~~~l~~~~~~~ 696 (1281)
+....|.......+.. ..-..+||.-|+..+..- +..|.--...++|+|||+.|.| ...+.+.+++-+.+..
T Consensus 124 vq~hacigg~n~gedikk--ld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~ 201 (400)
T KOG0328|consen 124 VQCHACIGGKNLGEDIKK--LDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGA 201 (400)
T ss_pred ceEEEEecCCccchhhhh--hcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCc
Confidence 3344444333222221 124578999999988653 4556666789999999999965 4567777777665678
Q ss_pred cEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHH
Q psy7773 697 HRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEV 776 (1281)
Q Consensus 697 ~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v 776 (1281)
..+++|||- +.++..+.++..++
T Consensus 202 Qvv~~SATl----p~eilemt~kfmtd----------------------------------------------------- 224 (400)
T KOG0328|consen 202 QVVLVSATL----PHEILEMTEKFMTD----------------------------------------------------- 224 (400)
T ss_pred eEEEEeccC----cHHHHHHHHHhcCC-----------------------------------------------------
Confidence 899999994 23444443333332
Q ss_pred hhcCCCceEEEEEc-CCCHHH-HHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhh
Q psy7773 777 ESQLPEKVEYIIKC-DMSGLQ-KLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQH 854 (1281)
Q Consensus 777 ~~~lP~k~~~~v~~-~ls~~q-~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~ 854 (1281)
.+...+.- +++..- +.+|-.
T Consensus 225 ------pvrilvkrdeltlEgIKqf~v~---------------------------------------------------- 246 (400)
T KOG0328|consen 225 ------PVRILVKRDELTLEGIKQFFVA---------------------------------------------------- 246 (400)
T ss_pred ------ceeEEEecCCCchhhhhhheee----------------------------------------------------
Confidence 22221111 011000 000000
Q ss_pred hcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhh
Q psy7773 855 IGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKF 934 (1281)
Q Consensus 855 ~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F 934 (1281)
.-+..-|+..|..+-..+--+ ..+|||+.....++|.+.+....+.+..+||.+++++|.+++++|
T Consensus 247 ------------ve~EewKfdtLcdLYd~LtIt--QavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dF 312 (400)
T KOG0328|consen 247 ------------VEKEEWKFDTLCDLYDTLTIT--QAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDF 312 (400)
T ss_pred ------------echhhhhHhHHHHHhhhhehh--eEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHh
Confidence 001112555555555444333 489999999999999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHH
Q psy7773 935 NEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVE 1003 (1281)
Q Consensus 935 n~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiE 1003 (1281)
+.+.+. +|+||++-++|+|+|..+.||+||+|-|+..|++|+||.+|.|.+- .+..|+....++
T Consensus 313 Rsg~Sr---vLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkG--vainFVk~~d~~ 376 (400)
T KOG0328|consen 313 RSGKSR---VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG--VAINFVKSDDLR 376 (400)
T ss_pred hcCCce---EEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcc--eEEEEecHHHHH
Confidence 998887 6999999999999999999999999999999999999999999875 456777755444
No 80
>PRK02362 ski2-like helicase; Provisional
Probab=99.86 E-value=5.2e-20 Score=235.69 Aligned_cols=321 Identities=21% Similarity=0.125 Sum_probs=201.8
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc-cHHHHHHHHHHHCC-CC
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS-TLSNWVLEFEKWAP-SA 621 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s-~l~~W~~E~~~~~p-~~ 621 (1281)
.+|+|+|.+++.-++ ..+.+.|++.+||+|||+++...+...+. ..+++|+|+|.. ++.|+..+|.++.+ +.
T Consensus 22 ~~l~p~Q~~ai~~~~---~~g~nvlv~APTGSGKTlia~lail~~l~---~~~kal~i~P~raLa~q~~~~~~~~~~~g~ 95 (737)
T PRK02362 22 EELYPPQAEAVEAGL---LDGKNLLAAIPTASGKTLIAELAMLKAIA---RGGKALYIVPLRALASEKFEEFERFEELGV 95 (737)
T ss_pred CcCCHHHHHHHHHHH---hCCCcEEEECCCcchHHHHHHHHHHHHHh---cCCcEEEEeChHHHHHHHHHHHHHhhcCCC
Confidence 479999999997533 35789999999999999998765554442 346899999975 55888888988753 57
Q ss_pred cEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccc--cccCceeEEEEeCCccccccc--hHHHHHHH---hhhc
Q psy7773 622 NVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSV--LSKIQWKCMIIDEGHRMKNHH--CKLTQTLN---TFYN 694 (1281)
Q Consensus 622 ~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~--l~~~~w~~vIvDEaHr~kn~~--s~~~~~l~---~~~~ 694 (1281)
++..+.|....... .....+|+|+|++.+...... ..-...++|||||+|.+.... ..+-..+. .+..
T Consensus 96 ~v~~~tGd~~~~~~-----~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~ 170 (737)
T PRK02362 96 RVGISTGDYDSRDE-----WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNP 170 (737)
T ss_pred EEEEEeCCcCcccc-----ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcCC
Confidence 78888886433211 124579999999977442211 011256899999999997532 22222222 2224
Q ss_pred cCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHH
Q psy7773 695 SSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKK 774 (1281)
Q Consensus 695 ~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~ 774 (1281)
..+.++||||+- +..++...+ ....+.+. .+
T Consensus 171 ~~qii~lSATl~--n~~~la~wl---~~~~~~~~-----------------------------------~r--------- 201 (737)
T PRK02362 171 DLQVVALSATIG--NADELADWL---DAELVDSE-----------------------------------WR--------- 201 (737)
T ss_pred CCcEEEEcccCC--CHHHHHHHh---CCCcccCC-----------------------------------CC---------
Confidence 567899999963 344443322 21111000 00
Q ss_pred HHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhh
Q psy7773 775 EVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQH 854 (1281)
Q Consensus 775 ~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~ 854 (1281)
|-.....+...-. ++ .... . + .+
T Consensus 202 ------pv~l~~~v~~~~~-----~~----------~~~~-------~------------~------~~----------- 224 (737)
T PRK02362 202 ------PIDLREGVFYGGA-----IH----------FDDS-------Q------------R------EV----------- 224 (737)
T ss_pred ------CCCCeeeEecCCe-----ec----------cccc-------c------------c------cC-----------
Confidence 1000000000000 00 0000 0 0 00
Q ss_pred hcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHC-----------------------
Q psy7773 855 IGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR----------------------- 911 (1281)
Q Consensus 855 ~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~----------------------- 911 (1281)
... .....+..+... ...++++||||..+..+..+...|...
T Consensus 225 --------~~~---~~~~~~~~~~~~----~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~ 289 (737)
T PRK02362 225 --------EVP---SKDDTLNLVLDT----LEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREV 289 (737)
T ss_pred --------CCc---cchHHHHHHHHH----HHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc
Confidence 000 001112222222 235778999999988777666655432
Q ss_pred -------------CCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEE----eC-----CC
Q psy7773 912 -------------DFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVII----FD-----SD 969 (1281)
Q Consensus 912 -------------g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~----~D-----~~ 969 (1281)
...+..+||+++..+|..+.+.|.++... +|+||.+++.|+|++..++||. || .|
T Consensus 290 ~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~---VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~ 366 (737)
T PRK02362 290 SDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIK---VISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQP 366 (737)
T ss_pred cCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCe---EEEechhhhhhcCCCceEEEEecceeecCCCCcee
Confidence 13567789999999999999999986544 5999999999999999888876 77 57
Q ss_pred CChhhhhhHhHhHHhhCCCCceEEEEEEeC
Q psy7773 970 WNPHQDLQAQDRAHRIGQKNEVRVLRLITV 999 (1281)
Q Consensus 970 wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~ 999 (1281)
.++..|.|++|||+|.|....-.++-++..
T Consensus 367 ~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 367 IPVLEYHQMAGRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred CCHHHHHHHhhcCCCCCCCCCceEEEEecC
Confidence 889999999999999998765555555543
No 81
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.85 E-value=9.6e-20 Score=215.36 Aligned_cols=312 Identities=16% Similarity=0.157 Sum_probs=193.5
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHCCCCcEEEEeCCHHHHHH----------
Q psy7773 567 GILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWAPSANVVAYKGSPLARRA---------- 635 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~p~~~~~~~~g~~~~r~~---------- 635 (1281)
.++..+||+|||.+++.++...+.. ...+++++|+|. +++.|+...+..+++. .+..++|.......
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~-~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKS-QKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEMGDSEEFE 79 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhh-CCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhccCCchhHH
Confidence 4788999999999999888776543 445689999996 5558899999888754 45555554331110
Q ss_pred -HHhh-----hccCCccEEEechHHHhhcccc-c-------ccCceeEEEEeCCccccccch-HHHHHHHhhh-ccCcEE
Q psy7773 636 -LQGR-----MKNSKFNVLLTTYEFIIKDKSV-L-------SKIQWKCMIIDEGHRMKNHHC-KLTQTLNTFY-NSSHRV 699 (1281)
Q Consensus 636 -~~~~-----~~~~~~~vvItTye~l~~~~~~-l-------~~~~w~~vIvDEaHr~kn~~s-~~~~~l~~~~-~~~~rl 699 (1281)
.... ......++++||++.+...... + ..+...+|||||+|.+..... .+...+..+. ...+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 80 HLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEE
Confidence 0000 0113467999999987654222 1 122347899999999975432 2233333221 245679
Q ss_pred EeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHHhhc
Q psy7773 700 LLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQ 779 (1281)
Q Consensus 700 lLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~ 779 (1281)
+||||+- ..+..++.-..... . ..
T Consensus 160 ~~SATlp----~~l~~~~~~~~~~~--------------~--------------------------------------~~ 183 (358)
T TIGR01587 160 LMSATLP----KFLKEYAEKIGYVE--------------F--------------------------------------NE 183 (358)
T ss_pred EEecCch----HHHHHHHhcCCCcc--------------c--------------------------------------cc
Confidence 9999952 11111100000000 0 00
Q ss_pred CCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhcCCC
Q psy7773 780 LPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNN 859 (1281)
Q Consensus 780 lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~ 859 (1281)
.++ .... +....|++...
T Consensus 184 ~~~---------~~~~---------------------------------------~~~~~~~~~~~-------------- 201 (358)
T TIGR01587 184 PLD---------LKEE---------------------------------------RRFERHRFIKI-------------- 201 (358)
T ss_pred CCC---------Cccc---------------------------------------cccccccceee--------------
Confidence 000 0000 00001111000
Q ss_pred ccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCC--cEEEEeCCCChHHHHHH----HHh
Q psy7773 860 TVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDF--SYLRLDGTTKSEDRGEL----LRK 933 (1281)
Q Consensus 860 ~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~--~~~~l~G~~~~~~R~~~----i~~ 933 (1281)
......|...+..++..+ ..+.++||||+....++.+...|...+. .+..+||.++..+|... ++.
T Consensus 202 -------~~~~~~~~~~l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~ 273 (358)
T TIGR01587 202 -------ESDKVGEISSLERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEE 273 (358)
T ss_pred -------ccccccCHHHHHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHH
Confidence 000123455555555433 3467899999999999999999988776 48999999999999764 889
Q ss_pred hcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCC----ceEEEEEEeCC---CHHHHH
Q psy7773 934 FNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKN----EVRVLRLITVN---SVEERI 1006 (1281)
Q Consensus 934 Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k----~V~V~rli~~~---tiEe~I 1006 (1281)
|.++... +|+||+++++|||+ .+++||+++.| +..++|++||++|.|.+. .|.||.....+ ..+..+
T Consensus 274 f~~~~~~---ilvaT~~~~~GiDi-~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~ 347 (358)
T TIGR01587 274 MKKNEKF---VIVATQVIEASLDI-SADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYEL 347 (358)
T ss_pred hcCCCCe---EEEECcchhceecc-CCCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHH
Confidence 9875443 59999999999999 58999998776 889999999999999764 35555554443 344444
Q ss_pred HHHHHH
Q psy7773 1007 LAAARY 1012 (1281)
Q Consensus 1007 ~~~~~~ 1012 (1281)
+.+-..
T Consensus 348 ~~~t~~ 353 (358)
T TIGR01587 348 VERTIQ 353 (358)
T ss_pred HHHHHH
Confidence 444433
No 82
>KOG0348|consensus
Probab=99.85 E-value=4.2e-20 Score=207.23 Aligned_cols=336 Identities=20% Similarity=0.299 Sum_probs=203.6
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC-----CCCC-EEEEeCCccH-HHHHHHHHHH
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKK-----NLGP-YLVIVPLSTL-SNWVLEFEKW 617 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~-----~~~~-~LIV~P~s~l-~~W~~E~~~~ 617 (1281)
.+.-.|..++.-++. +...++-..||+|||+..+.-+...+.... ..|+ .|||||+.-| .|-.+-+.+.
T Consensus 159 ~pTsVQkq~IP~lL~----grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKL 234 (708)
T KOG0348|consen 159 APTSVQKQAIPVLLE----GRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKL 234 (708)
T ss_pred ccchHhhcchhhhhc----CcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHH
Confidence 566778888887774 777899999999999998877766654322 1234 6999998776 6666666665
Q ss_pred CCCCcE----EEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccC---ceeEEEEeCCcccc--ccchHHHHH
Q psy7773 618 APSANV----VAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKI---QWKCMIIDEGHRMK--NHHCKLTQT 688 (1281)
Q Consensus 618 ~p~~~~----~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~---~w~~vIvDEaHr~k--n~~s~~~~~ 688 (1281)
...+.. +++.|.+.... ..++ ..+.+|+|.|++.|..+...-..+ ....||+|||+|+. +..-.++++
T Consensus 235 l~~~hWIVPg~lmGGEkkKSE--KARL-RKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~I 311 (708)
T KOG0348|consen 235 LKPFHWIVPGVLMGGEKKKSE--KARL-RKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQI 311 (708)
T ss_pred hcCceEEeeceeecccccccH--HHHH-hcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHH
Confidence 543332 34444432221 1222 357899999999998875544333 45679999999986 344444455
Q ss_pred HHhhh-------c------cCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHH
Q psy7773 689 LNTFY-------N------SSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETIL 755 (1281)
Q Consensus 689 l~~~~-------~------~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~ 755 (1281)
++.+- + -...+|||||-- ..
T Consensus 312 l~~v~~~~~~e~~~~~lp~q~q~mLlSATLt-d~---------------------------------------------- 344 (708)
T KOG0348|consen 312 LKAVHSIQNAECKDPKLPHQLQNMLLSATLT-DG---------------------------------------------- 344 (708)
T ss_pred HHHHhhccchhcccccccHHHHhHhhhhhhH-HH----------------------------------------------
Confidence 44330 0 022355666521 00
Q ss_pred HHHHHHHhhhHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHH
Q psy7773 756 IIRRLHKVLRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLR 835 (1281)
Q Consensus 756 ~~~~L~~~l~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr 835 (1281)
+++|.++ .|-+.. .+..+-+..| +.-....+.
T Consensus 345 -V~rLa~~---------------sLkDpv--~I~ld~s~~~------------------------------~~p~~~a~~ 376 (708)
T KOG0348|consen 345 -VNRLADL---------------SLKDPV--YISLDKSHSQ------------------------------LNPKDKAVQ 376 (708)
T ss_pred -HHHHhhc---------------cccCce--eeeccchhhh------------------------------cCcchhhhh
Confidence 1111110 011110 0000000000 000000111
Q ss_pred HhcCCccchhhhHHHHHhhhcCCCccccCCccccccchHH--HHHHHhhhhh--hcCCeEEEEechHHHHHHHHHHHHH-
Q psy7773 836 KLCNHPFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFE--LLDRILPKFK--ETKHRVLMFCQMTQLMTILEDYFIW- 910 (1281)
Q Consensus 836 k~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~--~L~~lL~~~~--~~~~kvLIFsq~~~~ld~L~~~L~~- 910 (1281)
..|.-|+--. + +.+...... ...+....+|+. .|..+|.... ....|+|||....++.+.-.+.|..
T Consensus 377 ev~~~~~~~~-----l-~~~~iPeqL--~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~ 448 (708)
T KOG0348|consen 377 EVDDGPAGDK-----L-DSFAIPEQL--LQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEA 448 (708)
T ss_pred hcCCcccccc-----c-ccccCcHHh--hhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhh
Confidence 1222111000 0 000000000 011233455554 4555555442 2455899999999888776666532
Q ss_pred ---------------------CCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCC
Q psy7773 911 ---------------------RDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSD 969 (1281)
Q Consensus 911 ---------------------~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~ 969 (1281)
.+.++.+|||+|++++|..++..|...... +|+||+++++||||+....||-||+|
T Consensus 449 l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~---VLLcTDVAaRGLDlP~V~~vVQYd~P 525 (708)
T KOG0348|consen 449 LLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRA---VLLCTDVAARGLDLPHVGLVVQYDPP 525 (708)
T ss_pred hhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccce---EEEehhhhhccCCCCCcCeEEEeCCC
Confidence 145799999999999999999999875443 79999999999999999999999999
Q ss_pred CChhhhhhHhHhHHhhCCCCceEE
Q psy7773 970 WNPHQDLQAQDRAHRIGQKNEVRV 993 (1281)
Q Consensus 970 wnp~~~~Qa~gR~~RiGQ~k~V~V 993 (1281)
.++..|++|+||..|+|-+-.-..
T Consensus 526 ~s~adylHRvGRTARaG~kG~alL 549 (708)
T KOG0348|consen 526 FSTADYLHRVGRTARAGEKGEALL 549 (708)
T ss_pred CCHHHHHHHhhhhhhccCCCceEE
Confidence 999999999999999999876443
No 83
>PRK00254 ski2-like helicase; Provisional
Probab=99.84 E-value=4.1e-19 Score=226.94 Aligned_cols=320 Identities=18% Similarity=0.102 Sum_probs=196.9
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHH-HHHHHHhcCCCCCEEEEeCCcc-HHHHHHHHHHHCC-C
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIAL-LTYLMEKKKNLGPYLVIVPLST-LSNWVLEFEKWAP-S 620 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~l-l~~l~~~~~~~~~~LIV~P~s~-l~~W~~E~~~~~p-~ 620 (1281)
..|+|+|.+++.-. +..+.+.|++.+||+|||+++... +..+. . ..+.+|+|+|... +.++...|..|.. +
T Consensus 22 ~~l~~~Q~~ai~~~---~~~g~nvlv~apTGsGKT~~~~l~il~~l~-~--~~~~~l~l~P~~aLa~q~~~~~~~~~~~g 95 (720)
T PRK00254 22 EELYPPQAEALKSG---VLEGKNLVLAIPTASGKTLVAEIVMVNKLL-R--EGGKAVYLVPLKALAEEKYREFKDWEKLG 95 (720)
T ss_pred CCCCHHHHHHHHHH---HhCCCcEEEECCCCcHHHHHHHHHHHHHHH-h--cCCeEEEEeChHHHHHHHHHHHHHHhhcC
Confidence 47999999999742 235789999999999999998544 44443 2 2368999999755 4888888887753 5
Q ss_pred CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccc--cccCceeEEEEeCCccccc--cchHHHHHHHhhhccC
Q psy7773 621 ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSV--LSKIQWKCMIIDEGHRMKN--HHCKLTQTLNTFYNSS 696 (1281)
Q Consensus 621 ~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~--l~~~~w~~vIvDEaHr~kn--~~s~~~~~l~~~~~~~ 696 (1281)
..+..+.|....... ....++|+|+|++.+...... ..--++++|||||+|.+.. ....+...+..+....
T Consensus 96 ~~v~~~~Gd~~~~~~-----~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~ 170 (720)
T PRK00254 96 LRVAMTTGDYDSTDE-----WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRA 170 (720)
T ss_pred CEEEEEeCCCCCchh-----hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcCcCC
Confidence 677777776432211 124679999999987543211 0112578999999999964 3344455555554557
Q ss_pred cEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHH
Q psy7773 697 HRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEV 776 (1281)
Q Consensus 697 ~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v 776 (1281)
+.++||||+- |..++... +....+.+. . +|
T Consensus 171 qiI~lSATl~--n~~~la~w---l~~~~~~~~-------~----------------------------rp---------- 200 (720)
T PRK00254 171 QILGLSATVG--NAEELAEW---LNAELVVSD-------W----------------------------RP---------- 200 (720)
T ss_pred cEEEEEccCC--CHHHHHHH---hCCccccCC-------C----------------------------CC----------
Confidence 7899999963 34444332 221111000 0 00
Q ss_pred hhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhc
Q psy7773 777 ESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIG 856 (1281)
Q Consensus 777 ~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 856 (1281)
.|-.. .+.... ...... .....+
T Consensus 201 ---v~l~~--~~~~~~---------------~~~~~~--------~~~~~~----------------------------- 223 (720)
T PRK00254 201 ---VKLRK--GVFYQG---------------FLFWED--------GKIERF----------------------------- 223 (720)
T ss_pred ---Cccee--eEecCC---------------eeeccC--------cchhcc-----------------------------
Confidence 01000 000000 000000 000000
Q ss_pred CCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHH--------------------------
Q psy7773 857 QNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIW-------------------------- 910 (1281)
Q Consensus 857 ~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~-------------------------- 910 (1281)
...+..++......+.++||||..+..+..+...|..
T Consensus 224 -----------------~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (720)
T PRK00254 224 -----------------PNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPT 286 (720)
T ss_pred -----------------hHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCC
Confidence 0001111222223467899999988766544433321
Q ss_pred -------CCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEE-------eCCCC-Chhhh
Q psy7773 911 -------RDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVII-------FDSDW-NPHQD 975 (1281)
Q Consensus 911 -------~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~-------~D~~w-np~~~ 975 (1281)
....+..+||+++.++|..+.+.|.++... +|+||++++.|+|+++.++||. ++.++ ....+
T Consensus 287 ~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~---VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~ 363 (720)
T PRK00254 287 NEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIK---VITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEI 363 (720)
T ss_pred cHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCe---EEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHH
Confidence 123477899999999999999999986544 5999999999999998888774 33333 34588
Q ss_pred hhHhHhHHhhCCCCceEEEEEEeCCC
Q psy7773 976 LQAQDRAHRIGQKNEVRVLRLITVNS 1001 (1281)
Q Consensus 976 ~Qa~gR~~RiGQ~k~V~V~rli~~~t 1001 (1281)
.|++|||+|.|....-.++-+++...
T Consensus 364 ~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 364 QQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HHhhhccCCCCcCCCceEEEEecCcc
Confidence 99999999998766656666665443
No 84
>KOG0347|consensus
Probab=99.84 E-value=1.1e-19 Score=204.45 Aligned_cols=364 Identities=21% Similarity=0.301 Sum_probs=225.4
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHH-HHHHHHHHHHhcC-----------CCC-CEEEEeCCccH-HHH
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQ-TIALLTYLMEKKK-----------NLG-PYLVIVPLSTL-SNW 610 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~-ai~ll~~l~~~~~-----------~~~-~~LIV~P~s~l-~~W 610 (1281)
.+.|.|...+.-++. .....|-|.+||+|||+. +|-++..+.+..+ ... -.|||+|+.-| .|.
T Consensus 203 ~Pt~IQsl~lp~ai~---gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV 279 (731)
T KOG0347|consen 203 RPTEIQSLVLPAAIR---GKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQV 279 (731)
T ss_pred CCccchhhcccHhhc---cchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHH
Confidence 566667666655442 224456689999999998 5555553332111 111 37999998776 777
Q ss_pred HHHHHHHC--CCCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhc----ccccccC-ceeEEEEeCCcccc--cc
Q psy7773 611 VLEFEKWA--PSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKD----KSVLSKI-QWKCMIIDEGHRMK--NH 681 (1281)
Q Consensus 611 ~~E~~~~~--p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~----~~~l~~~-~w~~vIvDEaHr~k--n~ 681 (1281)
..-|...+ +.+++..+.|.-...+ +.++.....+|||+|++.|... ..++..+ +..++|||||+||- ++
T Consensus 280 ~~Hl~ai~~~t~i~v~si~GGLavqK--QqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekgh 357 (731)
T KOG0347|consen 280 KQHLKAIAEKTQIRVASITGGLAVQK--QQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGH 357 (731)
T ss_pred HHHHHHhccccCeEEEEeechhHHHH--HHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhcc
Confidence 77777665 4667777777654433 2334445899999999988642 2234444 57899999999995 55
Q ss_pred chHHHHHHHhhh-----ccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHH
Q psy7773 682 HCKLTQTLNTFY-----NSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILI 756 (1281)
Q Consensus 682 ~s~~~~~l~~~~-----~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~ 756 (1281)
-..+++.|..+. .-+..+++|||-- +..-. |....... .......
T Consensus 358 F~Els~lL~~L~e~~~~~qrQTlVFSATlt------------~~~~~--------------~~~~~~k~-~~k~~~~--- 407 (731)
T KOG0347|consen 358 FEELSKLLKHLNEEQKNRQRQTLVFSATLT------------LVLQQ--------------PLSSSRKK-KDKEDEL--- 407 (731)
T ss_pred HHHHHHHHHHhhhhhcccccceEEEEEEee------------hhhcC--------------hhHHhhhc-cchhhhh---
Confidence 556666665543 1235589999921 11000 00000000 0000000
Q ss_pred HHHHHHhhhHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHH
Q psy7773 757 IRRLHKVLRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRK 836 (1281)
Q Consensus 757 ~~~L~~~l~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk 836 (1281)
-..+..++ +.+.-.=+++ + +++++. ......+..-+-
T Consensus 408 ~~kiq~Lm---------k~ig~~~kpk---i--iD~t~q-----------------------------~~ta~~l~Es~I 444 (731)
T KOG0347|consen 408 NAKIQHLM---------KKIGFRGKPK---I--IDLTPQ-----------------------------SATASTLTESLI 444 (731)
T ss_pred hHHHHHHH---------HHhCccCCCe---e--EecCcc-----------------------------hhHHHHHHHHhh
Confidence 01111111 1111111111 1 122221 112223333344
Q ss_pred hcCCccchhhhHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEE
Q psy7773 837 LCNHPFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYL 916 (1281)
Q Consensus 837 ~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~ 916 (1281)
.|. |. -. --.|.-+|. .-..|.||||+..+.+..|.-+|...+++.+
T Consensus 445 ~C~-~~-eK----------------------------D~ylyYfl~---ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~ 491 (731)
T KOG0347|consen 445 ECP-PL-EK----------------------------DLYLYYFLT---RYPGRTLVFCNSIDCVKRLTVLLNNLDIPPL 491 (731)
T ss_pred cCC-cc-cc----------------------------ceeEEEEEe---ecCCceEEEechHHHHHHHHHHHhhcCCCCc
Confidence 442 10 00 000000111 1234799999999999999999999999999
Q ss_pred EEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEE
Q psy7773 917 RLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRL 996 (1281)
Q Consensus 917 ~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rl 996 (1281)
.||.+|.+.+|.+.+++|.+..+. +||+|+++++|||+++..+||+|..|-+...|++|-||..|.+..- |.| .|
T Consensus 492 ~LHA~M~QKqRLknLEkF~~~~~~---VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~G-vsv-ml 566 (731)
T KOG0347|consen 492 PLHASMIQKQRLKNLEKFKQSPSG---VLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEG-VSV-ML 566 (731)
T ss_pred hhhHHHHHHHHHHhHHHHhcCCCe---EEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCC-eEE-EE
Confidence 999999999999999999875444 7999999999999999999999999999999999999999987532 211 11
Q ss_pred EeC---------------------CCHHHHHHHHHHHHHHHHHHHHhcC
Q psy7773 997 ITV---------------------NSVEERILAAARYKLNMDEKVIQAG 1024 (1281)
Q Consensus 997 i~~---------------------~tiEe~I~~~~~~K~~l~~~vi~~g 1024 (1281)
|.. -.|++.|+........|+..+..-+
T Consensus 567 ~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrLA~ei~~~e 615 (731)
T KOG0347|consen 567 CGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVRLAREIDKLE 615 (731)
T ss_pred eChHHhHHHHHHHHHHhhccCCCceeccHHHHHHHHHHHHHHHHHHHhh
Confidence 211 1468888888888888888776543
No 85
>KOG0335|consensus
Probab=99.84 E-value=6.6e-20 Score=209.45 Aligned_cols=318 Identities=18% Similarity=0.245 Sum_probs=212.2
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHH-HHHHHHHHhcC---------CCCCEEEEeCCccH-HHHH
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTI-ALLTYLMEKKK---------NLGPYLVIVPLSTL-SNWV 611 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai-~ll~~l~~~~~---------~~~~~LIV~P~s~l-~~W~ 611 (1281)
...+.|+|+.++.-+. .+.+.+.+..||+|||...+ -++.+++.... ....+||++|+.-| .|-.
T Consensus 94 ~~~ptpvQk~sip~i~----~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~ 169 (482)
T KOG0335|consen 94 YTKPTPVQKYSIPIIS----GGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIY 169 (482)
T ss_pred ccCCCcceeeccceee----cCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHH
Confidence 4589999999887655 57788899999999999865 44555554322 12458999998766 8888
Q ss_pred HHHHHHCCC--Cc-EEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhc--ccccccCceeEEEEeCCccccc---cch
Q psy7773 612 LEFEKWAPS--AN-VVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKD--KSVLSKIQWKCMIIDEGHRMKN---HHC 683 (1281)
Q Consensus 612 ~E~~~~~p~--~~-~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~--~~~l~~~~w~~vIvDEaHr~kn---~~s 683 (1281)
.|..++... +. +++|.| ...+... ......++++++|+..|..- ...+..-...++|+|||.+|.. +..
T Consensus 170 nea~k~~~~s~~~~~~~ygg-~~~~~q~--~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p 246 (482)
T KOG0335|consen 170 NEARKFSYLSGMKSVVVYGG-TDLGAQL--RFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEP 246 (482)
T ss_pred HHHHhhcccccceeeeeeCC-cchhhhh--hhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccc
Confidence 999888743 33 345555 3333222 22346799999999998653 2333333455999999999974 334
Q ss_pred HHHHHHHhhh----ccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHH
Q psy7773 684 KLTQTLNTFY----NSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRR 759 (1281)
Q Consensus 684 ~~~~~l~~~~----~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 759 (1281)
.+.+++...- ...+.+++|||=- . .
T Consensus 247 ~Ir~iv~~~~~~~~~~~qt~mFSAtfp-~--------------------------------------------------~ 275 (482)
T KOG0335|consen 247 QIRKIVEQLGMPPKNNRQTLLFSATFP-K--------------------------------------------------E 275 (482)
T ss_pred cHHHHhcccCCCCccceeEEEEeccCC-h--------------------------------------------------h
Confidence 4444443321 1234467777710 0 0
Q ss_pred HHHhhhHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcC
Q psy7773 760 LHKVLRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCN 839 (1281)
Q Consensus 760 L~~~l~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~ 839 (1281)
+..+...|+. +. | ........ +... +
T Consensus 276 iq~l~~~fl~---------~~-------------------y------i~laV~rv-----g~~~------------~--- 301 (482)
T KOG0335|consen 276 IQRLAADFLK---------DN-------------------Y------IFLAVGRV-----GSTS------------E--- 301 (482)
T ss_pred hhhhHHHHhh---------cc-------------------c------eEEEEeee-----cccc------------c---
Confidence 1111111110 00 0 00000000 0000 0
Q ss_pred CccchhhhHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhh-------cCCeEEEEechHHHHHHHHHHHHHCC
Q psy7773 840 HPFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKE-------TKHRVLMFCQMTQLMTILEDYFIWRD 912 (1281)
Q Consensus 840 hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~-------~~~kvLIFsq~~~~ld~L~~~L~~~g 912 (1281)
.+......+....|-..|..+|..... ..++++||+.....++.|+.+|...+
T Consensus 302 --------------------ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~ 361 (482)
T KOG0335|consen 302 --------------------NITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNG 361 (482)
T ss_pred --------------------cceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCC
Confidence 000000112233455555555554331 23489999999999999999999999
Q ss_pred CcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceE
Q psy7773 913 FSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVR 992 (1281)
Q Consensus 913 ~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~ 992 (1281)
+++..+||..++.+|.++++.|..+... +|++|.++++|||++...+||+||.|-+-..|++|+||++|.|+.--..
T Consensus 362 ~~~~sIhg~~tq~er~~al~~Fr~g~~p---vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~at 438 (482)
T KOG0335|consen 362 YPAKSIHGDRTQIEREQALNDFRNGKAP---VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRAT 438 (482)
T ss_pred CCceeecchhhhhHHHHHHHHhhcCCcc---eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeE
Confidence 9999999999999999999999997666 5999999999999999999999999999999999999999999987655
Q ss_pred EEE
Q psy7773 993 VLR 995 (1281)
Q Consensus 993 V~r 995 (1281)
.|.
T Consensus 439 sf~ 441 (482)
T KOG0335|consen 439 SFF 441 (482)
T ss_pred EEe
Confidence 543
No 86
>PRK01172 ski2-like helicase; Provisional
Probab=99.84 E-value=4.9e-19 Score=225.29 Aligned_cols=312 Identities=19% Similarity=0.142 Sum_probs=192.9
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc-cHHHHHHHHHHHCC-CC
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS-TLSNWVLEFEKWAP-SA 621 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s-~l~~W~~E~~~~~p-~~ 621 (1281)
.+|+|+|.+++..+. .+.+.|++.+||+|||+++...+...+.. .+.+++|+|.. +..++..++.++.. +.
T Consensus 21 ~~l~~~Q~~ai~~l~----~~~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~raLa~q~~~~~~~l~~~g~ 93 (674)
T PRK01172 21 FELYDHQRMAIEQLR----KGENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPLRSLAMEKYEELSRLRSLGM 93 (674)
T ss_pred CCCCHHHHHHHHHHh----cCCcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEechHHHHHHHHHHHHHHhhcCC
Confidence 369999999998753 57789999999999999987666555433 35899999975 45888888887653 45
Q ss_pred cEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhccc--ccccCceeEEEEeCCccccccc--hHHHHHHHh---hhc
Q psy7773 622 NVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKS--VLSKIQWKCMIIDEGHRMKNHH--CKLTQTLNT---FYN 694 (1281)
Q Consensus 622 ~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~--~l~~~~w~~vIvDEaHr~kn~~--s~~~~~l~~---~~~ 694 (1281)
.+..+.|....... .....+|+|+|++.+..... ...-.++++|||||+|.+.... ..+...+.. ...
T Consensus 94 ~v~~~~G~~~~~~~-----~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~ 168 (674)
T PRK01172 94 RVKISIGDYDDPPD-----FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNP 168 (674)
T ss_pred eEEEEeCCCCCChh-----hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCc
Confidence 66666665332111 12357999999987643211 1111257899999999996432 222222221 113
Q ss_pred cCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHH
Q psy7773 695 SSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKK 774 (1281)
Q Consensus 695 ~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~ 774 (1281)
..+.++||||+- +..++ .+|+..+..... .+
T Consensus 169 ~~riI~lSATl~--n~~~l------------------a~wl~~~~~~~~--------------------~r--------- 199 (674)
T PRK01172 169 DARILALSATVS--NANEL------------------AQWLNASLIKSN--------------------FR--------- 199 (674)
T ss_pred CCcEEEEeCccC--CHHHH------------------HHHhCCCccCCC--------------------CC---------
Confidence 456789999963 23333 233322110000 00
Q ss_pred HHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhh
Q psy7773 775 EVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQH 854 (1281)
Q Consensus 775 ~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~ 854 (1281)
..|-.. .++... .+| .+... .
T Consensus 200 ----~vpl~~-~i~~~~------~~~----------~~~~~------~-------------------------------- 220 (674)
T PRK01172 200 ----PVPLKL-GILYRK------RLI----------LDGYE------R-------------------------------- 220 (674)
T ss_pred ----CCCeEE-EEEecC------eee----------ecccc------c--------------------------------
Confidence 011110 011000 000 00000 0
Q ss_pred hcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHC-----------------------
Q psy7773 855 IGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR----------------------- 911 (1281)
Q Consensus 855 ~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~----------------------- 911 (1281)
... .+..++......++++|||+..+.....+...|...
T Consensus 221 -----------------~~~-~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~ 282 (674)
T PRK01172 221 -----------------SQV-DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNE 282 (674)
T ss_pred -----------------ccc-cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHH
Confidence 000 012233333345678999999988777777666442
Q ss_pred --CCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCC---------CCChhhhhhHhH
Q psy7773 912 --DFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDS---------DWNPHQDLQAQD 980 (1281)
Q Consensus 912 --g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~---------~wnp~~~~Qa~g 980 (1281)
...+..+||+++.++|..+.+.|.++... +|+||.+++.|+|+++ .+||++|. ++++..+.|++|
T Consensus 283 ~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~---VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~G 358 (674)
T PRK01172 283 MLPHGVAFHHAGLSNEQRRFIEEMFRNRYIK---VIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIG 358 (674)
T ss_pred HHhcCEEEecCCCCHHHHHHHHHHHHcCCCe---EEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhh
Confidence 12356789999999999999999986544 5999999999999986 67777664 457889999999
Q ss_pred hHHhhCCCCceEEEEEE
Q psy7773 981 RAHRIGQKNEVRVLRLI 997 (1281)
Q Consensus 981 R~~RiGQ~k~V~V~rli 997 (1281)
||+|.|....-..+-++
T Consensus 359 RAGR~g~d~~g~~~i~~ 375 (674)
T PRK01172 359 RAGRPGYDQYGIGYIYA 375 (674)
T ss_pred cCCCCCCCCcceEEEEe
Confidence 99999976653333333
No 87
>KOG0336|consensus
Probab=99.82 E-value=1.3e-19 Score=196.70 Aligned_cols=310 Identities=19% Similarity=0.242 Sum_probs=209.8
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHH--HH---HHHHhcC-CCCCEEEEeCCccH-HHHHHHHHHH
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIAL--LT---YLMEKKK-NLGPYLVIVPLSTL-SNWVLEFEKW 617 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~l--l~---~l~~~~~-~~~~~LIV~P~s~l-~~W~~E~~~~ 617 (1281)
++.|.|-.+-.-+ -++...|-...||+|||+..+.- +. ....... ..-.+||+.|..-| .+-.-|..++
T Consensus 242 KPtPIqSQaWPI~----LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 242 KPTPIQSQAWPIL----LQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred CCCcchhccccee----ecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 5666676643222 35777888889999999876532 11 1111111 22357999998777 5566676654
Q ss_pred C--CCCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhc--ccccccCceeEEEEeCCcccc--ccchHHHHHHHh
Q psy7773 618 A--PSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKD--KSVLSKIQWKCMIIDEGHRMK--NHHCKLTQTLNT 691 (1281)
Q Consensus 618 ~--p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~--~~~l~~~~w~~vIvDEaHr~k--n~~s~~~~~l~~ 691 (1281)
. ....+++|.|....... . ....+.+++|+|+..|... ...+.-....|||+|||++|. .+..++.++|..
T Consensus 318 syng~ksvc~ygggnR~eqi--e-~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilld 394 (629)
T KOG0336|consen 318 SYNGLKSVCVYGGGNRNEQI--E-DLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLD 394 (629)
T ss_pred hhcCcceEEEecCCCchhHH--H-HHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhh
Confidence 3 44556777765433322 1 1246789999999998653 334444468899999999997 566778888888
Q ss_pred hhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHH
Q psy7773 692 FYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRR 771 (1281)
Q Consensus 692 ~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR 771 (1281)
+.+-+..++-|||- |--+||
T Consensus 395 iRPDRqtvmTSATW------------------------------------------------------------P~~Vrr 414 (629)
T KOG0336|consen 395 IRPDRQTVMTSATW------------------------------------------------------------PEGVRR 414 (629)
T ss_pred cCCcceeeeecccC------------------------------------------------------------chHHHH
Confidence 75555666777772 111222
Q ss_pred hHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHH
Q psy7773 772 LKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKY 851 (1281)
Q Consensus 772 ~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~ 851 (1281)
+.....+ .+...++=.+.|.+ |+
T Consensus 415 La~sY~K--ep~~v~vGsLdL~a-------------------------------------------~~------------ 437 (629)
T KOG0336|consen 415 LAQSYLK--EPMIVYVGSLDLVA-------------------------------------------VK------------ 437 (629)
T ss_pred HHHHhhh--CceEEEecccceee-------------------------------------------ee------------
Confidence 2221111 01111111111100 00
Q ss_pred HhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHH
Q psy7773 852 CQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELL 931 (1281)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i 931 (1281)
.+....-....+.|+..+..++..+ ..+.|||||+....++|-|..-|...|+...-|||+-.+.+|..++
T Consensus 438 --------sVkQ~i~v~~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al 508 (629)
T KOG0336|consen 438 --------SVKQNIIVTTDSEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMAL 508 (629)
T ss_pred --------eeeeeEEecccHHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHH
Confidence 0000001112455776666666554 5677999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCc
Q psy7773 932 RKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNE 990 (1281)
Q Consensus 932 ~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~ 990 (1281)
+.|..++ ++ +|++|+.+++|||+++..+|++||.|-|...|.+|+||++|.|.+-.
T Consensus 509 ~~~ksG~--vr-ILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~ 564 (629)
T KOG0336|consen 509 EDFKSGE--VR-ILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGT 564 (629)
T ss_pred HhhhcCc--eE-EEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcc
Confidence 9999865 45 49999999999999999999999999999999999999999998764
No 88
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.82 E-value=6e-19 Score=209.29 Aligned_cols=307 Identities=19% Similarity=0.233 Sum_probs=222.3
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHCCCC
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWAPSA 621 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~p~~ 621 (1281)
...+||=|.+++..++. +.++|...+||.||++..-... ++ ..|.+|||.|. |++......+.... +
T Consensus 15 y~~FR~gQ~evI~~~l~----g~d~lvvmPTGgGKSlCyQiPA--ll----~~G~TLVVSPLiSLM~DQV~~l~~~G--i 82 (590)
T COG0514 15 YASFRPGQQEIIDALLS----GKDTLVVMPTGGGKSLCYQIPA--LL----LEGLTLVVSPLISLMKDQVDQLEAAG--I 82 (590)
T ss_pred ccccCCCHHHHHHHHHc----CCcEEEEccCCCCcchHhhhHH--Hh----cCCCEEEECchHHHHHHHHHHHHHcC--c
Confidence 34789999999998885 6889999999999997643222 22 25799999995 77788888887754 4
Q ss_pred cEEEEeC--CHHHHHHHHhhhccCCccEEEechHHHhhc--ccccccCceeEEEEeCCccccccc-------hHHHHHHH
Q psy7773 622 NVVAYKG--SPLARRALQGRMKNSKFNVLLTTYEFIIKD--KSVLSKIQWKCMIIDEGHRMKNHH-------CKLTQTLN 690 (1281)
Q Consensus 622 ~~~~~~g--~~~~r~~~~~~~~~~~~~vvItTye~l~~~--~~~l~~~~w~~vIvDEaHr~kn~~-------s~~~~~l~ 690 (1281)
.+..+.+ +...+..+......+..+++..++|.+... ...+......+++|||||++.... ..+.. +.
T Consensus 83 ~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~-l~ 161 (590)
T COG0514 83 RAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGR-LR 161 (590)
T ss_pred eeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHH-HH
Confidence 4444433 455566666677778899999999999875 455667789999999999997432 22222 33
Q ss_pred hhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHH
Q psy7773 691 TFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLR 770 (1281)
Q Consensus 691 ~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lR 770 (1281)
..++...++.||||--..-..|+...|..-.|..|. ..|.+|-
T Consensus 162 ~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~------~sfdRpN------------------------------- 204 (590)
T COG0514 162 AGLPNPPVLALTATATPRVRDDIREQLGLQDANIFR------GSFDRPN------------------------------- 204 (590)
T ss_pred hhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEE------ecCCCch-------------------------------
Confidence 334667889999997666666666666544443321 1111110
Q ss_pred HhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHH
Q psy7773 771 RLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEK 850 (1281)
Q Consensus 771 R~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~ 850 (1281)
. .|... .
T Consensus 205 ------------i---------------~~~v~-~--------------------------------------------- 211 (590)
T COG0514 205 ------------L---------------ALKVV-E--------------------------------------------- 211 (590)
T ss_pred ------------h---------------hhhhh-h---------------------------------------------
Confidence 0 00000 0
Q ss_pred HHhhhcCCCccccCCccccccchHHHHHHHhh-hhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHH
Q psy7773 851 YCQHIGQNNTVVSGPDIYRTSGKFELLDRILP-KFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGE 929 (1281)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~-~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~ 929 (1281)
..+++.+.+ +|. .....+..-||||..+...+.+...|...|++...+||+++.++|..
T Consensus 212 ------------------~~~~~~q~~--fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~ 271 (590)
T COG0514 212 ------------------KGEPSDQLA--FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERER 271 (590)
T ss_pred ------------------cccHHHHHH--HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHH
Confidence 000111111 111 12223444799999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEE
Q psy7773 930 LLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLR 995 (1281)
Q Consensus 930 ~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~r 995 (1281)
+-+.|..++.. ++++|.|.|.|||-++...||+||+|-++..|.|-+|||+|-|...++..++
T Consensus 272 ~q~~f~~~~~~---iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~ 334 (590)
T COG0514 272 VQQAFLNDEIK---VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLY 334 (590)
T ss_pred HHHHHhcCCCc---EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEee
Confidence 99999987666 6999999999999999999999999999999999999999999988765443
No 89
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.82 E-value=6.2e-19 Score=217.86 Aligned_cols=105 Identities=23% Similarity=0.413 Sum_probs=87.7
Q ss_pred hcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHH-----HHHHhhcC----CC-----CCeEEEEEecccc
Q psy7773 886 ETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRG-----ELLRKFNE----PE-----SKYFIFLLSTRAG 951 (1281)
Q Consensus 886 ~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~-----~~i~~Fn~----~~-----~~~~v~LlsT~ag 951 (1281)
..+.++||||+.+..++.|...|...++ ..|||.+++.+|. .+++.|.. +. .+. .+||+|+++
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~-~ILVATdVa 346 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGT-VYLVCTSAG 346 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccc-eEEeccchh
Confidence 3567899999999999999999998887 8999999999999 78999975 22 123 359999999
Q ss_pred ccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCc--eEEEEE
Q psy7773 952 GLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNE--VRVLRL 996 (1281)
Q Consensus 952 g~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~--V~V~rl 996 (1281)
++|||+.. ++||+++.|+ ..|+||+||++|.|.... +.|+.+
T Consensus 347 erGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 347 EVGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hhcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceEEEEee
Confidence 99999975 9999988774 799999999999998654 444433
No 90
>KOG4284|consensus
Probab=99.82 E-value=1.2e-19 Score=206.71 Aligned_cols=315 Identities=16% Similarity=0.212 Sum_probs=221.1
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCC---C
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAP---S 620 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p---~ 620 (1281)
.+.+.|..++...+. +..-|+-.--|+|||++...++..-+......--.+||+|+.-+ .|...-|.+.+| +
T Consensus 47 ~ptkiQaaAIP~~~~----kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g 122 (980)
T KOG4284|consen 47 LPTKIQAAAIPAIFS----KMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTG 122 (980)
T ss_pred CCCchhhhhhhhhhc----ccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccC
Confidence 566789888876664 56678889999999998544444433333444467999998877 677777888776 5
Q ss_pred CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhc--ccccccCceeEEEEeCCccccc---cchHHHHHHHhhhcc
Q psy7773 621 ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKD--KSVLSKIQWKCMIIDEGHRMKN---HHCKLTQTLNTFYNS 695 (1281)
Q Consensus 621 ~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~--~~~l~~~~w~~vIvDEaHr~kn---~~s~~~~~l~~~~~~ 695 (1281)
+++.+|.|....... .......+|+|-|++.|... ...+..-+.+++|+|||+.+.. ....+..++..+.+.
T Consensus 123 ~~csvfIGGT~~~~d---~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~ 199 (980)
T KOG4284|consen 123 ARCSVFIGGTAHKLD---LIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQI 199 (980)
T ss_pred cceEEEecCchhhhh---hhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchh
Confidence 778888887554432 23345667999999999764 4566677899999999999865 344566777777677
Q ss_pred CcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHH
Q psy7773 696 SHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKE 775 (1281)
Q Consensus 696 ~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~ 775 (1281)
+..+.+|||--+| +.+ + |.++++.-+|-|.-.+
T Consensus 200 rQv~a~SATYp~n-Ldn---~-------------------------------------------Lsk~mrdp~lVr~n~~ 232 (980)
T KOG4284|consen 200 RQVAAFSATYPRN-LDN---L-------------------------------------------LSKFMRDPALVRFNAD 232 (980)
T ss_pred heeeEEeccCchh-HHH---H-------------------------------------------HHHHhcccceeecccC
Confidence 8889999994332 211 1 2222211111111000
Q ss_pred HhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhh
Q psy7773 776 VESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHI 855 (1281)
Q Consensus 776 v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~ 855 (1281)
--.-+--+..++.. |..|.-..
T Consensus 233 d~~L~GikQyv~~~------------------------------------------------~s~nnsve---------- 254 (980)
T KOG4284|consen 233 DVQLFGIKQYVVAK------------------------------------------------CSPNNSVE---------- 254 (980)
T ss_pred Cceeechhheeeec------------------------------------------------cCCcchHH----------
Confidence 00000001111111 11111000
Q ss_pred cCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhc
Q psy7773 856 GQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFN 935 (1281)
Q Consensus 856 ~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn 935 (1281)
..--|++.|..++..+.-.. .||||....-++-+..+|...|+++-.|.|.|++.+|..+++.++
T Consensus 255 -------------emrlklq~L~~vf~~ipy~Q--AlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr 319 (980)
T KOG4284|consen 255 -------------EMRLKLQKLTHVFKSIPYVQ--ALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLR 319 (980)
T ss_pred -------------HHHHHHHHHHHHHhhCchHH--HHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhh
Confidence 01126666666666654433 799999999999999999999999999999999999999999998
Q ss_pred CCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCC
Q psy7773 936 EPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKN 989 (1281)
Q Consensus 936 ~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k 989 (1281)
+ ..++| |+||+..++|||-..+|.||++|+|-+...|.+|||||+|.|..-
T Consensus 320 ~--f~~rI-LVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G 370 (980)
T KOG4284|consen 320 A--FRVRI-LVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHG 370 (980)
T ss_pred h--ceEEE-EEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccc
Confidence 7 55666 999999999999999999999999999999999999999999764
No 91
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.82 E-value=5.2e-18 Score=207.71 Aligned_cols=404 Identities=15% Similarity=0.166 Sum_probs=220.6
Q ss_pred ccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHH---HHCCCC
Q psy7773 546 LKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFE---KWAPSA 621 (1281)
Q Consensus 546 L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~---~~~p~~ 621 (1281)
++|||.+.+..+.. +.|+|+...||.|||++++..+.... . ....++||+|+.-| .+|...+. +|+ ++
T Consensus 69 lrpydVQlig~l~l----~~G~Iaem~TGeGKTLta~Lpa~l~a-L--~g~~V~VVTpn~yLA~Rdae~m~~l~~~L-GL 140 (762)
T TIGR03714 69 MFPYDVQVLGAIVL----HQGNIAEMKTGEGKTLTATMPLYLNA-L--TGKGAMLVTTNDYLAKRDAEEMGPVYEWL-GL 140 (762)
T ss_pred CCccHHHHHHHHHh----cCCceeEecCCcchHHHHHHHHHHHh-h--cCCceEEeCCCHHHHHHHHHHHHHHHhhc-CC
Confidence 56676666654442 34579999999999999876643222 1 22469999998866 66666554 444 45
Q ss_pred cEEEEeCC-HHHHHHHHhhhccCCccEEEechHHHhhc--cc-------ccccCceeEEEEeCCccccccchHHHHHHHh
Q psy7773 622 NVVAYKGS-PLARRALQGRMKNSKFNVLLTTYEFIIKD--KS-------VLSKIQWKCMIIDEGHRMKNHHCKLTQTLNT 691 (1281)
Q Consensus 622 ~~~~~~g~-~~~r~~~~~~~~~~~~~vvItTye~l~~~--~~-------~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~ 691 (1281)
.+.+..+. ...............++|+++|+..|..+ .. .+....+.++||||||+|.-..
T Consensus 141 sv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDe--------- 211 (762)
T TIGR03714 141 TVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDS--------- 211 (762)
T ss_pred cEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhcc---------
Confidence 55443332 11100000001123589999999988432 11 1112367899999999875433
Q ss_pred hhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCC------------------hhHHHHHhcccccCCcccccCCHHHH
Q psy7773 692 FYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKS------------------CSTFEQWFNAPFATTGEKVELNEEET 753 (1281)
Q Consensus 692 ~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~------------------~~~f~~~f~~~~~~~~~~~~~~~~~~ 753 (1281)
++..|++||.|-.. ..+|..++-+.+..-.. ...-.+.|..+ .+.....
T Consensus 212 ---artpliisg~~~~~--~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~--------~l~~~~~ 278 (762)
T TIGR03714 212 ---AQTPLVISGAPRVQ--SNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKID--------NLYSEEY 278 (762)
T ss_pred ---CcCCeeeeCCCccc--hHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCC--------ccCChhh
Confidence 33458899977533 34665553332211110 00011111110 0111111
Q ss_pred HHHHHHHHHhhhHH-HHHHhHHHHhhcCCCceEEEEEc------CCCHHHHHHHHHHHhcccccccCCccCCCCCCchHH
Q psy7773 754 ILIIRRLHKVLRPF-LLRRLKKEVESQLPEKVEYIIKC------DMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARA 826 (1281)
Q Consensus 754 ~~~~~~L~~~l~~~-~lRR~k~~v~~~lP~k~~~~v~~------~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~ 826 (1281)
....+.+...|+.. ++.|-+..+ +.+....+|.- +-..++.-+.+.+..+.-........ ....- +
T Consensus 279 ~~~~~~i~~al~A~~~~~~d~dYi---V~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~-t~a~I---t 351 (762)
T TIGR03714 279 FELVRHINLALRAHYLFKRNKDYV---VTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETR-AMASI---T 351 (762)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceE---EECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCce-eeeee---e
Confidence 22233333444332 222222211 11121222210 11123344444443322111110000 00001 1
Q ss_pred HHHHHHHHHHhcCCccchhhhHHHHHhhhcCCC-------c--cccCCcc--ccccchHHHHHHHhhhhhhcCCeEEEEe
Q psy7773 827 LKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNN-------T--VVSGPDI--YRTSGKFELLDRILPKFKETKHRVLMFC 895 (1281)
Q Consensus 827 ~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~-------~--~~~~~~~--~~~s~K~~~L~~lL~~~~~~~~kvLIFs 895 (1281)
+.+.+....+++--.-........+...++... . ....++. .....|+.++...+..+...+..|||||
T Consensus 352 ~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft 431 (762)
T TIGR03714 352 YQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLIT 431 (762)
T ss_pred HHHHHhhCchhcccCCCChhHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 111111112222111001111111211111110 0 0111121 2345799999999988888899999999
Q ss_pred chHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcc---------cCCEEEEe
Q psy7773 896 QMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQ---------AADTVIIF 966 (1281)
Q Consensus 896 q~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~---------~ad~VI~~ 966 (1281)
......+.|...|...|+++..++|.+...+|..+...|+.+ . ++|||+.+|+|+|++ +.++||.|
T Consensus 432 ~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~---VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~ 506 (762)
T TIGR03714 432 GSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--A---VTVATSMAGRGTDIKLGKGVAELGGLAVIGTE 506 (762)
T ss_pred CcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--e---EEEEccccccccCCCCCccccccCCeEEEEec
Confidence 999999999999999999999999999988877776666553 2 699999999999999 88999999
Q ss_pred CCCCChhhhhhHhHhHHhhCCCCceE
Q psy7773 967 DSDWNPHQDLQAQDRAHRIGQKNEVR 992 (1281)
Q Consensus 967 D~~wnp~~~~Qa~gR~~RiGQ~k~V~ 992 (1281)
++|-+... .|+.||++|.|..-.+.
T Consensus 507 ~~ps~rid-~qr~GRtGRqG~~G~s~ 531 (762)
T TIGR03714 507 RMENSRVD-LQLRGRSGRQGDPGSSQ 531 (762)
T ss_pred CCCCcHHH-HHhhhcccCCCCceeEE
Confidence 99987755 99999999999876543
No 92
>KOG0339|consensus
Probab=99.82 E-value=3.2e-19 Score=198.57 Aligned_cols=322 Identities=21% Similarity=0.306 Sum_probs=213.4
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHH-HHHHHHHhc---CCCCCE-EEEeCCccH-HHHHHHHHHHC
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIA-LLTYLMEKK---KNLGPY-LVIVPLSTL-SNWVLEFEKWA 618 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~-ll~~l~~~~---~~~~~~-LIV~P~s~l-~~W~~E~~~~~ 618 (1281)
++.|.|-.+|.-.++ +...|--.-+|+|||-..+- .+.+.+.+. ...+|+ ||+||+.-+ .|...|.++|+
T Consensus 245 kptpiq~qalptals----grdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~ 320 (731)
T KOG0339|consen 245 KPTPIQCQALPTALS----GRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFG 320 (731)
T ss_pred cCCcccccccccccc----cccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhh
Confidence 555666666554442 33334334599999977553 333444322 234565 778887555 88888988885
Q ss_pred C--CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCccccc--cchHHHHHHHhh
Q psy7773 619 P--SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKN--HHCKLTQTLNTF 692 (1281)
Q Consensus 619 p--~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn--~~s~~~~~l~~~ 692 (1281)
. +++++..+|.......... + .....+||||++.|+... ......+..|||+|||.||-. ...+...+...+
T Consensus 321 K~ygl~~v~~ygGgsk~eQ~k~-L-k~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hi 398 (731)
T KOG0339|consen 321 KAYGLRVVAVYGGGSKWEQSKE-L-KEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHI 398 (731)
T ss_pred hhccceEEEeecCCcHHHHHHh-h-hcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhhc
Confidence 3 4555444444333222221 2 267899999999997642 233344678999999999974 334444444444
Q ss_pred hccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHh
Q psy7773 693 YNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRL 772 (1281)
Q Consensus 693 ~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~ 772 (1281)
.+-+..|++|||= . .++-++.+.+
T Consensus 399 rpdrQtllFsaTf--------------------------~-------------------------~kIe~lard~----- 422 (731)
T KOG0339|consen 399 RPDRQTLLFSATF--------------------------K-------------------------KKIEKLARDI----- 422 (731)
T ss_pred CCcceEEEeeccc--------------------------h-------------------------HHHHHHHHHH-----
Confidence 3445678999981 1 1111111111
Q ss_pred HHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHH
Q psy7773 773 KKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYC 852 (1281)
Q Consensus 773 k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~ 852 (1281)
|-+.+.. |...... ...-+.|.-.+|.
T Consensus 423 -------L~dpVrv-Vqg~vge--------------------------------an~dITQ~V~V~~------------- 449 (731)
T KOG0339|consen 423 -------LSDPVRV-VQGEVGE--------------------------------ANEDITQTVSVCP------------- 449 (731)
T ss_pred -------hcCCeeE-EEeehhc--------------------------------cccchhheeeecc-------------
Confidence 1111111 1110000 0000111111111
Q ss_pred hhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHH
Q psy7773 853 QHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLR 932 (1281)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~ 932 (1281)
....|+.+|.+-|..+...| +||||+.-....+-|...|...|+++..+||++.+.+|.+.+.
T Consensus 450 ----------------s~~~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls 512 (731)
T KOG0339|consen 450 ----------------SEEKKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLS 512 (731)
T ss_pred ----------------CcHHHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHH
Confidence 12358888888887766655 6999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHH
Q psy7773 933 KFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVE 1003 (1281)
Q Consensus 933 ~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiE 1003 (1281)
.|.....+ +|+.|+++.+|+++....+||+||..-....+.|++||.+|.|-+ -..|.|||.-..+
T Consensus 513 ~fKkk~~~---VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 513 KFKKKRKP---VLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred HHhhcCCc---eEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 99986666 699999999999999999999999999999999999999999988 5678888865444
No 93
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.81 E-value=4.4e-18 Score=209.15 Aligned_cols=335 Identities=20% Similarity=0.175 Sum_probs=218.9
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC--CC---CCEEEEeCCccHH-HHHHHHHH
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKK--NL---GPYLVIVPLSTLS-NWVLEFEK 616 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~--~~---~~~LIV~P~s~l~-~W~~E~~~ 616 (1281)
...|+|+|..++..+. .|.|+++..+||+|||..|+..+...+...+ .. -.+|-|.|...|. .....+..
T Consensus 20 ~~~~t~~Q~~a~~~i~----~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~ 95 (814)
T COG1201 20 FTSLTPPQRYAIPEIH----SGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEE 95 (814)
T ss_pred cCCCCHHHHHHHHHHh----CCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 3589999999987766 5999999999999999998765544443332 11 2489999987764 45555655
Q ss_pred HCC--CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhc------ccccccCceeEEEEeCCccccccc--hHHH
Q psy7773 617 WAP--SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKD------KSVLSKIQWKCMIIDEGHRMKNHH--CKLT 686 (1281)
Q Consensus 617 ~~p--~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~------~~~l~~~~w~~vIvDEaHr~kn~~--s~~~ 686 (1281)
|.. ++.+-+-+|..... .........++|+|||+++|.-. ...|. +..+|||||.|-+.+.. ++++
T Consensus 96 ~~~~~G~~v~vRhGDT~~~--er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~--~vr~VIVDEiHel~~sKRG~~Ls 171 (814)
T COG1201 96 PLRELGIEVAVRHGDTPQS--EKQKMLKNPPHILITTPESLAILLNSPKFRELLR--DVRYVIVDEIHALAESKRGVQLA 171 (814)
T ss_pred HHHHcCCccceecCCCChH--HhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhc--CCcEEEeehhhhhhccccchhhh
Confidence 542 55666677754332 23445567899999999998543 23333 45679999999998543 4454
Q ss_pred HHHHh---hhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHh
Q psy7773 687 QTLNT---FYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKV 763 (1281)
Q Consensus 687 ~~l~~---~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 763 (1281)
-.+.+ +.....|++||||- .++.++ ..||.+..- +.
T Consensus 172 l~LeRL~~l~~~~qRIGLSATV--~~~~~v---arfL~g~~~------------~~------------------------ 210 (814)
T COG1201 172 LSLERLRELAGDFQRIGLSATV--GPPEEV---AKFLVGFGD------------PC------------------------ 210 (814)
T ss_pred hhHHHHHhhCcccEEEeehhcc--CCHHHH---HHHhcCCCC------------ce------------------------
Confidence 44433 32346799999993 344443 333322210 00
Q ss_pred hhHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccc
Q psy7773 764 LRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFM 843 (1281)
Q Consensus 764 l~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l 843 (1281)
..|......+...-+.++--..
T Consensus 211 ----------~Iv~~~~~k~~~i~v~~p~~~~------------------------------------------------ 232 (814)
T COG1201 211 ----------EIVDVSAAKKLEIKVISPVEDL------------------------------------------------ 232 (814)
T ss_pred ----------EEEEcccCCcceEEEEecCCcc------------------------------------------------
Confidence 0000001111111111100000
Q ss_pred hhhhHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCC-CcEEEEeCCC
Q psy7773 844 FQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRD-FSYLRLDGTT 922 (1281)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g-~~~~~l~G~~ 922 (1281)
.....=...+...+..+......+|||++.+.+++.+...|...+ ..+..-|||.
T Consensus 233 ------------------------~~~~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSl 288 (814)
T COG1201 233 ------------------------IYDEELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSL 288 (814)
T ss_pred ------------------------ccccchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccc
Confidence 000001111222333333445579999999999999999999887 8889999999
Q ss_pred ChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhH-HhhCCCCceEEEEEEeCCC
Q psy7773 923 KSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRA-HRIGQKNEVRVLRLITVNS 1001 (1281)
Q Consensus 923 ~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~-~RiGQ~k~V~V~rli~~~t 1001 (1281)
+.++|..+-++|.+|+-. .++||.+..+|||+-..|.||.|.+|-......||+||+ ||+|... -.++++.+
T Consensus 289 Sre~R~~vE~~lk~G~lr---avV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~S---kg~ii~~~- 361 (814)
T COG1201 289 SRELRLEVEERLKEGELK---AVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVS---KGIIIAED- 361 (814)
T ss_pred cHHHHHHHHHHHhcCCce---EEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcc---cEEEEecC-
Confidence 999999999999997744 489999999999999999999999999999999999999 5566543 34455555
Q ss_pred HHHHHHHHHHHHHH
Q psy7773 1002 VEERILAAARYKLN 1015 (1281)
Q Consensus 1002 iEe~I~~~~~~K~~ 1015 (1281)
.++.+-..+..+..
T Consensus 362 r~dllE~~vi~~~a 375 (814)
T COG1201 362 RDDLLECLVLADLA 375 (814)
T ss_pred HHHHHHHHHHHHHH
Confidence 56655555444433
No 94
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.81 E-value=8.8e-18 Score=210.87 Aligned_cols=369 Identities=15% Similarity=0.139 Sum_probs=206.0
Q ss_pred cCcccHHHHHHHHHHHHhhcC------CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc-cHHHHHHHHH
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNN------NLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS-TLSNWVLEFE 615 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~------~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s-~l~~W~~E~~ 615 (1281)
..-+|+||..+|+.++....+ ..+|++.+.+|+|||++++.++..++. .....++|||||.. +..||..+|.
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~-~~~~~~vl~lvdR~~L~~Q~~~~f~ 314 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALE-LLKNPKVFFVVDRRELDYQLMKEFQ 314 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHh-hcCCCeEEEEECcHHHHHHHHHHHH
Confidence 445899999999998877654 357999999999999999999888774 34446899999975 5599999999
Q ss_pred HHCCCCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhc-ccccccC----ceeEEEEeCCccccccchHHHHHHH
Q psy7773 616 KWAPSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKD-KSVLSKI----QWKCMIIDEGHRMKNHHCKLTQTLN 690 (1281)
Q Consensus 616 ~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~-~~~l~~~----~w~~vIvDEaHr~kn~~s~~~~~l~ 690 (1281)
.+.+.... -.++ ...+..........|+|||.+.|... ...+... ...+||+|||||.-.. .....+.
T Consensus 315 ~~~~~~~~--~~~s---~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~--~~~~~l~ 387 (667)
T TIGR00348 315 SLQKDCAE--RIES---IAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG--ELAKNLK 387 (667)
T ss_pred hhCCCCCc--ccCC---HHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch--HHHHHHH
Confidence 98753211 1122 12222223334578999999999752 1111111 2238999999997532 3456666
Q ss_pred hhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHH
Q psy7773 691 TFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLR 770 (1281)
Q Consensus 691 ~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lR 770 (1281)
..++..++++|||||....-..-+. .|...|..++.. +.+.
T Consensus 388 ~~~p~a~~lGfTaTP~~~~d~~t~~--------------~f~~~fg~~i~~-------------------------Y~~~ 428 (667)
T TIGR00348 388 KALKNASFFGFTGTPIFKKDRDTSL--------------TFAYVFGRYLHR-------------------------YFIT 428 (667)
T ss_pred hhCCCCcEEEEeCCCcccccccccc--------------cccCCCCCeEEE-------------------------eeHH
Confidence 6667889999999998532111111 110001111000 0000
Q ss_pred HhHHHHhhcC-CCceEEEEEcC--CCHHH-HHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhh
Q psy7773 771 RLKKEVESQL-PEKVEYIIKCD--MSGLQ-KLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQN 846 (1281)
Q Consensus 771 R~k~~v~~~l-P~k~~~~v~~~--ls~~q-~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~ 846 (1281)
.-+...+ -+-....+.+. ++... ...+....... .. .........+......+..+..+|-....
T Consensus 429 ---~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~---~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 497 (667)
T TIGR00348 429 ---DAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELL---PE-----RIREITKESLKEKLQKTKKILFNEDRLES 497 (667)
T ss_pred ---HHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhh---hc-----cccHHHHHHHHHHHHHHHhhhcChHHHHH
Confidence 0011111 01011111111 11100 01111110000 00 00000011111122222222222211111
Q ss_pred hHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhh-hhcCCeEEEEechHHHHHHHHHHHHHC-----CCcEEEEeC
Q psy7773 847 IEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKF-KETKHRVLMFCQMTQLMTILEDYFIWR-----DFSYLRLDG 920 (1281)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~-~~~~~kvLIFsq~~~~ld~L~~~L~~~-----g~~~~~l~G 920 (1281)
+. ..+.+-..+. ...+.|.+|||.++..+..+...|... +...+.++|
T Consensus 498 ia--------------------------~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~ 551 (667)
T TIGR00348 498 IA--------------------------KDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTG 551 (667)
T ss_pred HH--------------------------HHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecC
Confidence 11 1111111111 123578999999999988888777554 345566777
Q ss_pred CCChH---------------------HHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHh
Q psy7773 921 TTKSE---------------------DRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQ 979 (1281)
Q Consensus 921 ~~~~~---------------------~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~ 979 (1281)
+.+.. ....++++|.++ .++.| ||+++...+|.|.+.++++++.-|--+ +.++|++
T Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~-~~~~i-lIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai 628 (667)
T TIGR00348 552 KESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE-ENPKL-LIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAI 628 (667)
T ss_pred CccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC-CCceE-EEEEcccccccCCCccceEEEeccccc-cHHHHHH
Confidence 65433 224789999874 34555 778899999999999999988776554 5689999
Q ss_pred HhHHhh-CCCC-ceEEEEEEe
Q psy7773 980 DRAHRI-GQKN-EVRVLRLIT 998 (1281)
Q Consensus 980 gR~~Ri-GQ~k-~V~V~rli~ 998 (1281)
||+.|+ +..| ...|+.++-
T Consensus 629 ~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 629 ARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred HHhccccCCCCCCEEEEECcC
Confidence 999995 5434 477877765
No 95
>KOG0326|consensus
Probab=99.80 E-value=6.7e-20 Score=193.34 Aligned_cols=313 Identities=19% Similarity=0.238 Sum_probs=215.0
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH----HHHHHHHHHHCCC
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL----SNWVLEFEKWAPS 620 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l----~~W~~E~~~~~p~ 620 (1281)
.+.|.|.+++.-++. +.+.+.-.-.|+|||-..+-.+...+......--.+|+||..-+ +|-..++.++. +
T Consensus 107 kPSPiQeesIPiaLt----GrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~-~ 181 (459)
T KOG0326|consen 107 KPSPIQEESIPIALT----GRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHL-G 181 (459)
T ss_pred CCCCccccccceeec----chhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhccc-C
Confidence 577888888876653 33334446789999977554444433333333457999997654 67788888887 4
Q ss_pred CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCccccccc--hHHHHHHHhhhccC
Q psy7773 621 ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNHH--CKLTQTLNTFYNSS 696 (1281)
Q Consensus 621 ~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~~--s~~~~~l~~~~~~~ 696 (1281)
+.+.+-.|....+..+.. .....+++|.|+..+.... ..-...+-.++|+|||+.+.... .-+.+.+.-+.+.+
T Consensus 182 i~vmvttGGT~lrDDI~R--l~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~r 259 (459)
T KOG0326|consen 182 IKVMVTTGGTSLRDDIMR--LNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKER 259 (459)
T ss_pred eEEEEecCCcccccceee--ecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccc
Confidence 777777777655543221 2467899999999987642 22222356789999999998644 34445555555667
Q ss_pred cEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHH
Q psy7773 697 HRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEV 776 (1281)
Q Consensus 697 ~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v 776 (1281)
..++.|||= .. +...| |-|.++
T Consensus 260 QillySATF-P~------------------tVk~F------------------------------------m~~~l~--- 281 (459)
T KOG0326|consen 260 QILLYSATF-PL------------------TVKGF------------------------------------MDRHLK--- 281 (459)
T ss_pred eeeEEeccc-ch------------------hHHHH------------------------------------HHHhcc---
Confidence 788999991 00 11222 211111
Q ss_pred hhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhc
Q psy7773 777 ESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIG 856 (1281)
Q Consensus 777 ~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 856 (1281)
...+..+.-+|+.
T Consensus 282 -----kPy~INLM~eLtl-------------------------------------------------------------- 294 (459)
T KOG0326|consen 282 -----KPYEINLMEELTL-------------------------------------------------------------- 294 (459)
T ss_pred -----Ccceeehhhhhhh--------------------------------------------------------------
Confidence 1111111000100
Q ss_pred CCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcC
Q psy7773 857 QNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNE 936 (1281)
Q Consensus 857 ~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~ 936 (1281)
.++......+..+-|+..|..++.++.-+. .||||+++...++|+..+...||++..+|..|.++.|.++..+|.+
T Consensus 295 --~GvtQyYafV~e~qKvhCLntLfskLqINQ--sIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~ 370 (459)
T KOG0326|consen 295 --KGVTQYYAFVEERQKVHCLNTLFSKLQINQ--SIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRN 370 (459)
T ss_pred --cchhhheeeechhhhhhhHHHHHHHhcccc--eEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhc
Confidence 000111123345567777777777765544 8999999999999999999999999999999999999999999998
Q ss_pred CCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEe
Q psy7773 937 PESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLIT 998 (1281)
Q Consensus 937 ~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~ 998 (1281)
|. |+. |+||+..-+|||+|+.|+||+||.|-|+..|++|+||.+|.|--- ....||+
T Consensus 371 G~--crn-LVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlG--lAInLit 427 (459)
T KOG0326|consen 371 GK--CRN-LVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLG--LAINLIT 427 (459)
T ss_pred cc--cce-eeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcc--eEEEEEe
Confidence 54 554 999999999999999999999999999999999999999999753 3345554
No 96
>KOG0341|consensus
Probab=99.80 E-value=1.1e-19 Score=195.82 Aligned_cols=323 Identities=21% Similarity=0.359 Sum_probs=207.6
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHH-HHHHHHHHh------cCCCCCE-EEEeCCccHHHHHHHH-H
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTI-ALLTYLMEK------KKNLGPY-LVIVPLSTLSNWVLEF-E 615 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai-~ll~~l~~~------~~~~~~~-LIV~P~s~l~~W~~E~-~ 615 (1281)
.+.|.|..|+.-+++ +...|--.-||+|||++.+ -++...++. ...-||+ |||||+.-|.....++ .
T Consensus 192 ~PTpIQvQGlPvvLs----GRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie 267 (610)
T KOG0341|consen 192 HPTPIQVQGLPVVLS----GRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIE 267 (610)
T ss_pred CCCceeecCcceEee----cCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHH
Confidence 788999999887664 5555544569999998733 233222221 1233554 9999998774444333 3
Q ss_pred HH--------CCCCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCccccc--cch
Q psy7773 616 KW--------APSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKN--HHC 683 (1281)
Q Consensus 616 ~~--------~p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn--~~s 683 (1281)
.+ +|.++.....|.-..+..+. ......+++++|+..|..-. ..++---..|+.+|||+||-. +..
T Consensus 268 ~~~~~L~e~g~P~lRs~LciGG~~v~eql~--~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEd 345 (610)
T KOG0341|consen 268 QYVAALQEAGYPELRSLLCIGGVPVREQLD--VVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFED 345 (610)
T ss_pred HHHHHHHhcCChhhhhhhhhcCccHHHHHH--HHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchh
Confidence 32 25555555555544443332 22457899999999886531 122222346899999999964 333
Q ss_pred HHHHHHHhhhcc-CcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHH
Q psy7773 684 KLTQTLNTFYNS-SHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHK 762 (1281)
Q Consensus 684 ~~~~~l~~~~~~-~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~ 762 (1281)
.+ +.+..+|++ +..||+|||-- ..+ +.|.+ ..
T Consensus 346 di-r~iF~~FK~QRQTLLFSATMP-~KI----------------------Q~FAk-----------------------SA 378 (610)
T KOG0341|consen 346 DI-RTIFSFFKGQRQTLLFSATMP-KKI----------------------QNFAK-----------------------SA 378 (610)
T ss_pred hH-HHHHHHHhhhhheeeeecccc-HHH----------------------HHHHH-----------------------hh
Confidence 33 344455565 45689999931 000 00100 00
Q ss_pred hhhHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCcc
Q psy7773 763 VLRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPF 842 (1281)
Q Consensus 763 ~l~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~ 842 (1281)
++.|. +|. .+..++.++ +.+.++-
T Consensus 379 LVKPv-------------------tvN-----------------------------VGRAGAAsl-dViQevE------- 402 (610)
T KOG0341|consen 379 LVKPV-------------------TVN-----------------------------VGRAGAASL-DVIQEVE------- 402 (610)
T ss_pred cccce-------------------EEe-----------------------------cccccccch-hHHHHHH-------
Confidence 00110 000 011111111 1111110
Q ss_pred chhhhHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCC
Q psy7773 843 MFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTT 922 (1281)
Q Consensus 843 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~ 922 (1281)
.++...|+-.|.+- +..+...||||+....-.|-+.+||-..|+..+.|||+.
T Consensus 403 ------------------------yVkqEaKiVylLeC---LQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGK 455 (610)
T KOG0341|consen 403 ------------------------YVKQEAKIVYLLEC---LQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGK 455 (610)
T ss_pred ------------------------HHHhhhhhhhHHHH---hccCCCceEEEeccccChHHHHHHHHHccceeEEeecCc
Confidence 11122344444333 345667799999999999999999999999999999999
Q ss_pred ChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCH
Q psy7773 923 KSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSV 1002 (1281)
Q Consensus 923 ~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~ti 1002 (1281)
.+++|..++..|+.+..+ +|++|++++-|||+++..+||+||.|-...+|.+||||.+|-|.+-- ...||-+++-
T Consensus 456 DQedR~~ai~afr~gkKD---VLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~Gi--ATTfINK~~~ 530 (610)
T KOG0341|consen 456 DQEDRHYAIEAFRAGKKD---VLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGI--ATTFINKNQE 530 (610)
T ss_pred chhHHHHHHHHHhcCCCc---eEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcce--eeeeecccch
Confidence 999999999999998777 69999999999999999999999999999999999999999998753 3345666665
Q ss_pred HHHHHH
Q psy7773 1003 EERILA 1008 (1281)
Q Consensus 1003 Ee~I~~ 1008 (1281)
+..++.
T Consensus 531 esvLlD 536 (610)
T KOG0341|consen 531 ESVLLD 536 (610)
T ss_pred HHHHHH
Confidence 555443
No 97
>KOG0332|consensus
Probab=99.80 E-value=4.1e-18 Score=184.06 Aligned_cols=313 Identities=19% Similarity=0.263 Sum_probs=200.1
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHH-HHH---HHHCCC
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWV-LEF---EKWAPS 620 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~-~E~---~~~~p~ 620 (1281)
.+...|..++.-|+. +.+.|-|.-...|+|||......+.......-..--++.++|..-+.... .-+ .+|. .
T Consensus 112 kPskIQe~aLPlll~--~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ 188 (477)
T KOG0332|consen 112 KPSKIQETALPLLLA--EPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFT-E 188 (477)
T ss_pred CcchHHHhhcchhhc--CCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCce-e
Confidence 566677777776654 34556677778999999775544433332222223467789987764433 333 3343 2
Q ss_pred Cc-EEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccC---ceeEEEEeCCccccccc---hHHHHHHHhhh
Q psy7773 621 AN-VVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKI---QWKCMIIDEGHRMKNHH---CKLTQTLNTFY 693 (1281)
Q Consensus 621 ~~-~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~---~w~~vIvDEaHr~kn~~---s~~~~~l~~~~ 693 (1281)
+. ...+.|+...| ...-.-+|+|-|+.++......|..+ ...++|+|||..|-+.. ....++...+-
T Consensus 189 ita~yair~sk~~r------G~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP 262 (477)
T KOG0332|consen 189 LTASYAIRGSKAKR------GNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLP 262 (477)
T ss_pred eeEEEEecCccccc------CCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcC
Confidence 22 23333442221 11234579999999998765554433 67899999999997654 23344444443
Q ss_pred ccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhH
Q psy7773 694 NSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLK 773 (1281)
Q Consensus 694 ~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k 773 (1281)
+....+++|||=.. ....| ..|
T Consensus 263 ~~~QllLFSATf~e-------------------~V~~F------------------------------------a~k--- 284 (477)
T KOG0332|consen 263 RNQQLLLFSATFVE-------------------KVAAF------------------------------------ALK--- 284 (477)
T ss_pred CcceEEeeechhHH-------------------HHHHH------------------------------------HHH---
Confidence 36677889998210 01111 111
Q ss_pred HHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHh
Q psy7773 774 KEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQ 853 (1281)
Q Consensus 774 ~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~ 853 (1281)
-+|......+.-.- --+..+.+|--.|.+
T Consensus 285 -----ivpn~n~i~Lk~ee---------------------------------l~L~~IkQlyv~C~~------------- 313 (477)
T KOG0332|consen 285 -----IVPNANVIILKREE---------------------------------LALDNIKQLYVLCAC------------- 313 (477)
T ss_pred -----hcCCCceeeeehhh---------------------------------ccccchhhheeeccc-------------
Confidence 12332222221000 000011222222221
Q ss_pred hhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHh
Q psy7773 854 HIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRK 933 (1281)
Q Consensus 854 ~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~ 933 (1281)
...|+++|..+... ..-| ..||||+...++.+|...|...|+.+..++|.+...+|..++++
T Consensus 314 ----------------~~~K~~~l~~lyg~-~tig-qsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~ 375 (477)
T KOG0332|consen 314 ----------------RDDKYQALVNLYGL-LTIG-QSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDR 375 (477)
T ss_pred ----------------hhhHHHHHHHHHhh-hhhh-heEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHH
Confidence 12466666663322 2222 37999999999999999999999999999999999999999999
Q ss_pred hcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCC------ChhhhhhHhHhHHhhCCCCceEEEEEEe
Q psy7773 934 FNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDW------NPHQDLQAQDRAHRIGQKNEVRVLRLIT 998 (1281)
Q Consensus 934 Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~w------np~~~~Qa~gR~~RiGQ~k~V~V~rli~ 998 (1281)
|+.+... +||+|.+.++|||.+..+.||+||+|- .|..|++|+||++|.|.+-- .+.|+-
T Consensus 376 Fr~g~~k---VLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~--a~n~v~ 441 (477)
T KOG0332|consen 376 FREGKEK---VLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGL--AINLVD 441 (477)
T ss_pred HhcCcce---EEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccce--EEEeec
Confidence 9998776 699999999999999999999999984 68999999999999997653 333554
No 98
>PRK09401 reverse gyrase; Reviewed
Probab=99.79 E-value=1.2e-17 Score=218.06 Aligned_cols=297 Identities=17% Similarity=0.157 Sum_probs=193.3
Q ss_pred ccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCCC
Q psy7773 542 VNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAPS 620 (1281)
Q Consensus 542 ~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p~ 620 (1281)
+|..|+|+|..++..++ .+.+.++..+||+|||..++.++.++. . ....+|||||+..| .||...+..++..
T Consensus 77 ~G~~pt~iQ~~~i~~il----~g~dv~i~ApTGsGKT~f~l~~~~~l~-~--~g~~alIL~PTreLa~Qi~~~l~~l~~~ 149 (1176)
T PRK09401 77 TGSKPWSLQRTWAKRLL----LGESFAIIAPTGVGKTTFGLVMSLYLA-K--KGKKSYIIFPTRLLVEQVVEKLEKFGEK 149 (1176)
T ss_pred cCCCCcHHHHHHHHHHH----CCCcEEEEcCCCCCHHHHHHHHHHHHH-h--cCCeEEEEeccHHHHHHHHHHHHHHhhh
Confidence 46689999999887766 477889999999999975544443332 2 24689999998666 8999999988754
Q ss_pred C--cEEEEeCC----HHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccc------------
Q psy7773 621 A--NVVAYKGS----PLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHH------------ 682 (1281)
Q Consensus 621 ~--~~~~~~g~----~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~------------ 682 (1281)
. .+.+..|. ...+.........+.++|+|+|++.|.++...+....+++|||||||++....
T Consensus 150 ~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF 229 (1176)
T PRK09401 150 VGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGF 229 (1176)
T ss_pred cCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhCCC
Confidence 3 33333322 12233333334456799999999999887766666679999999999986311
Q ss_pred --hHHHHHHHhhhc------------------------cCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhc
Q psy7773 683 --CKLTQTLNTFYN------------------------SSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFN 736 (1281)
Q Consensus 683 --s~~~~~l~~~~~------------------------~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~ 736 (1281)
..+..++..+.. ....+++|||.-.......
T Consensus 230 ~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~----------------------- 286 (1176)
T PRK09401 230 SEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVK----------------------- 286 (1176)
T ss_pred CHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHH-----------------------
Confidence 112222221100 2345667777532111100
Q ss_pred ccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCcc
Q psy7773 737 APFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEK 816 (1281)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~ 816 (1281)
+++ ++ + . +.+ .
T Consensus 287 -------------------------------l~~----~l---l----~--~~v---------------------~---- 297 (1176)
T PRK09401 287 -------------------------------LFR----EL---L----G--FEV---------------------G---- 297 (1176)
T ss_pred -------------------------------Hhh----cc---c----e--EEe---------------------c----
Confidence 000 00 0 0 000 0
Q ss_pred CCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEec
Q psy7773 817 GKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQ 896 (1281)
Q Consensus 817 ~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq 896 (1281)
... . .++.+ .|-| +....|...|..++..+ +..+||||+
T Consensus 298 -~~~-~----------~~rnI-~~~y-------------------------i~~~~k~~~L~~ll~~l---~~~~LIFv~ 336 (1176)
T PRK09401 298 -SPV-F----------YLRNI-VDSY-------------------------IVDEDSVEKLVELVKRL---GDGGLIFVP 336 (1176)
T ss_pred -Ccc-c----------ccCCc-eEEE-------------------------EEcccHHHHHHHHHHhc---CCCEEEEEe
Confidence 000 0 00000 0000 00114666677777654 346999999
Q ss_pred hHHH---HHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEe----ccccccccCccc-CCEEEEeCC
Q psy7773 897 MTQL---MTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLS----TRAGGLGLNLQA-ADTVIIFDS 968 (1281)
Q Consensus 897 ~~~~---ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~Lls----T~agg~GlNL~~-ad~VI~~D~ 968 (1281)
.... ++.|..+|...|+++..+||++ .+.+++|.++..+ +|++ |+++++|||++. ..+||+||.
T Consensus 337 t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~---VLVatas~tdv~aRGIDiP~~IryVI~y~v 408 (1176)
T PRK09401 337 SDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVD---VLVGVASYYGVLVRGIDLPERIRYAIFYGV 408 (1176)
T ss_pred cccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCC---EEEEecCCCCceeecCCCCcceeEEEEeCC
Confidence 8766 9999999999999999999999 2346999987655 4777 689999999998 899999999
Q ss_pred CC------ChhhhhhHhHhHHhhC
Q psy7773 969 DW------NPHQDLQAQDRAHRIG 986 (1281)
Q Consensus 969 ~w------np~~~~Qa~gR~~RiG 986 (1281)
|- ....+.+++||+-.+-
T Consensus 409 P~~~~~~~~~~~~~~~~~r~~~~~ 432 (1176)
T PRK09401 409 PKFKFSLEEELAPPFLLLRLLSLL 432 (1176)
T ss_pred CCEEEeccccccCHHHHHHHHhhc
Confidence 98 7778889999996544
No 99
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=5.4e-17 Score=200.93 Aligned_cols=402 Identities=15% Similarity=0.114 Sum_probs=222.7
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH----HHHHHHHHHHC
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL----SNWVLEFEKWA 618 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l----~~W~~E~~~~~ 618 (1281)
+-.+++.|+.|.- +. +.|.|....||.|||++++..+..... ....++||+|+..| ..|...+.+|.
T Consensus 76 g~~p~~vQl~~~~--~l----~~G~Iaem~TGeGKTL~a~lp~~l~al---~G~~v~VvTpt~~LA~qd~e~~~~l~~~l 146 (790)
T PRK09200 76 GMRPYDVQLIGAL--VL----HEGNIAEMQTGEGKTLTATMPLYLNAL---EGKGVHLITVNDYLAKRDAEEMGQVYEFL 146 (790)
T ss_pred CCCCchHHHHhHH--HH----cCCceeeecCCCcchHHHHHHHHHHHH---cCCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 4456666666643 32 234589999999999987655543221 23589999999888 34777777776
Q ss_pred CCCcEEEEeCCHH-HHHHHHhhhccCCccEEEechHHH-----hhccc----ccccCceeEEEEeCCccccccchHHHHH
Q psy7773 619 PSANVVAYKGSPL-ARRALQGRMKNSKFNVLLTTYEFI-----IKDKS----VLSKIQWKCMIIDEGHRMKNHHCKLTQT 688 (1281)
Q Consensus 619 p~~~~~~~~g~~~-~r~~~~~~~~~~~~~vvItTye~l-----~~~~~----~l~~~~w~~vIvDEaHr~kn~~s~~~~~ 688 (1281)
++.+.++.|... ..... .....+|+++|+..| ..... ....-...++||||||++.=..
T Consensus 147 -Gl~v~~i~g~~~~~~~r~----~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDe------ 215 (790)
T PRK09200 147 -GLTVGLNFSDIDDASEKK----AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDE------ 215 (790)
T ss_pred -CCeEEEEeCCCCcHHHHH----HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceecc------
Confidence 677777766543 21111 123479999997666 33221 1122367899999999985433
Q ss_pred HHhhhccCcEEEeecCCCCCChhHHHHHHhh----hcCCC-CC----------Ch---hHHHHHhcccccCCcccccCCH
Q psy7773 689 LNTFYNSSHRVLLTGTPLQNKLPELWALLNF----LLPSI-FK----------SC---STFEQWFNAPFATTGEKVELNE 750 (1281)
Q Consensus 689 l~~~~~~~~rllLTgTPl~n~~~el~~ll~f----l~p~~-~~----------~~---~~f~~~f~~~~~~~~~~~~~~~ 750 (1281)
++.-|++||.|-.. ..+|...+- +.++. |. +. ....+.|..+ .+..
T Consensus 216 ------a~tpliisg~~~~~--~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~--------~l~~ 279 (790)
T PRK09200 216 ------AQTPLIISGKPRVQ--SNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGID--------NLYS 279 (790)
T ss_pred ------CCCceeeeCCCccc--cHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCc--------cccC
Confidence 22337788754322 224444322 22211 00 00 0001111110 0101
Q ss_pred HHHHHHHHHHHHhhhH-HHHHHhHHHHhhcCCCceEEEEEc------CCCHHHHHHHHHHHhcccccccCCccCCCCCCc
Q psy7773 751 EETILIIRRLHKVLRP-FLLRRLKKEVESQLPEKVEYIIKC------DMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGG 823 (1281)
Q Consensus 751 ~~~~~~~~~L~~~l~~-~~lRR~k~~v~~~lP~k~~~~v~~------~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~ 823 (1281)
.........+...|+. +++.+-...+ +.+....+|.- +-+.++.-+.+.+..+.-....... ....
T Consensus 280 ~~~~~~~~~i~~Al~A~~~~~~d~dYi---V~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~----~t~a 352 (790)
T PRK09200 280 LEHQVLYRHIILALRAHVLFKRDVDYI---VYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEEN----RTMA 352 (790)
T ss_pred hhhhHHHHHHHHHHHHHHHhhcCCcEE---EECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCc----eehh
Confidence 1111122333333332 2222211111 11111112210 1123334444444332211111100 0011
Q ss_pred hHHHHHHHHHHHHhcCCccchhhhHHHHHhhhcCCCc---------cccCCc--cccccchHHHHHHHhhhhhhcCCeEE
Q psy7773 824 ARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNNT---------VVSGPD--IYRTSGKFELLDRILPKFKETKHRVL 892 (1281)
Q Consensus 824 ~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~---------~~~~~~--~~~~s~K~~~L~~lL~~~~~~~~kvL 892 (1281)
.-++.+.+....+++--.-.....+..+...++.... ....++ ......|+..|...+......+..||
T Consensus 353 ~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvL 432 (790)
T PRK09200 353 SITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVL 432 (790)
T ss_pred hhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEE
Confidence 1122222222233222111111112222222111100 001111 12346789999999888777889999
Q ss_pred EEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCc---ccCC-----EEE
Q psy7773 893 MFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNL---QAAD-----TVI 964 (1281)
Q Consensus 893 IFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL---~~ad-----~VI 964 (1281)
|||......+.|...|...|+++..|+|.+...++..+...|..+ . ++|||+.+|+|+|+ +.+. +||
T Consensus 433 If~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~---VlIATdmAgRG~DI~l~~~V~~~GGL~VI 507 (790)
T PRK09200 433 IGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--A---VTVATNMAGRGTDIKLGEGVHELGGLAVI 507 (790)
T ss_pred EEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--e---EEEEccchhcCcCCCcccccccccCcEEE
Confidence 999999999999999999999999999999888877777776642 2 69999999999999 5777 999
Q ss_pred EeCCCCChhhhhhHhHhHHhhCCCCceE
Q psy7773 965 IFDSDWNPHQDLQAQDRAHRIGQKNEVR 992 (1281)
Q Consensus 965 ~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~ 992 (1281)
+||.|-|+..|.|+.||++|.|..-.+.
T Consensus 508 ~~d~p~s~r~y~qr~GRtGR~G~~G~s~ 535 (790)
T PRK09200 508 GTERMESRRVDLQLRGRSGRQGDPGSSQ 535 (790)
T ss_pred eccCCCCHHHHHHhhccccCCCCCeeEE
Confidence 9999999999999999999999876543
No 100
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.79 E-value=2.2e-17 Score=194.90 Aligned_cols=301 Identities=18% Similarity=0.281 Sum_probs=208.3
Q ss_pred cccHHHHHHHHHHHHhhcCCC--CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCC--
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNL--NGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAP-- 619 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~--~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p-- 619 (1281)
+|...|..++.-+..-..... +-+|-.++|+|||++|+..+...+..+ .-+...+|+.+| .|-...+.+|++
T Consensus 262 ~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G---~Q~ALMAPTEILA~QH~~~~~~~l~~~ 338 (677)
T COG1200 262 KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG---YQAALMAPTEILAEQHYESLRKWLEPL 338 (677)
T ss_pred CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC---CeeEEeccHHHHHHHHHHHHHHHhhhc
Confidence 688999999998876554433 458888999999999987777666433 467899999999 778889999997
Q ss_pred CCcEEEEeCC--HHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhc-cC
Q psy7773 620 SANVVAYKGS--PLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYN-SS 696 (1281)
Q Consensus 620 ~~~~~~~~g~--~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~-~~ 696 (1281)
++.+....|+ +..|+.....+..+..++||-|+..+.....+ .+..+||+||-||+.-.. ...|...-. .+
T Consensus 339 ~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F---~~LgLVIiDEQHRFGV~Q---R~~L~~KG~~~P 412 (677)
T COG1200 339 GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEF---HNLGLVIIDEQHRFGVHQ---RLALREKGEQNP 412 (677)
T ss_pred CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceee---cceeEEEEeccccccHHH---HHHHHHhCCCCC
Confidence 5667777776 44566667778889999999999988654332 356899999999997544 334443324 57
Q ss_pred cEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHH
Q psy7773 697 HRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEV 776 (1281)
Q Consensus 697 ~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v 776 (1281)
+.|.|||||+..++.= + .|++.+ -.+
T Consensus 413 h~LvMTATPIPRTLAl--t--------~fgDld--------------------------------------------vS~ 438 (677)
T COG1200 413 HVLVMTATPIPRTLAL--T--------AFGDLD--------------------------------------------VSI 438 (677)
T ss_pred cEEEEeCCCchHHHHH--H--------Hhcccc--------------------------------------------chh
Confidence 9999999999876531 0 011100 112
Q ss_pred hhcCCCce-E-EEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhh
Q psy7773 777 ESQLPEKV-E-YIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQH 854 (1281)
Q Consensus 777 ~~~lP~k~-~-~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~ 854 (1281)
..++|+.. . .+.+++.. .-..+|..+.
T Consensus 439 IdElP~GRkpI~T~~i~~~-~~~~v~e~i~-------------------------------------------------- 467 (677)
T COG1200 439 IDELPPGRKPITTVVIPHE-RRPEVYERIR-------------------------------------------------- 467 (677)
T ss_pred hccCCCCCCceEEEEeccc-cHHHHHHHHH--------------------------------------------------
Confidence 23567642 1 22222211 1112222221
Q ss_pred hcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHH--------HHHHHHHHHHH--CCCcEEEEeCCCCh
Q psy7773 855 IGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQ--------LMTILEDYFIW--RDFSYLRLDGTTKS 924 (1281)
Q Consensus 855 ~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~--------~ld~L~~~L~~--~g~~~~~l~G~~~~ 924 (1281)
.. ...|+++.+.|.-.. .+..+...|.. .++++..+||.|+.
T Consensus 468 ---------------------------~e-i~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~ 519 (677)
T COG1200 468 ---------------------------EE-IAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKP 519 (677)
T ss_pred ---------------------------HH-HHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCCh
Confidence 11 123444544444322 23333344442 26778999999999
Q ss_pred HHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCC-CChhhhhhHhHhHHhhCCCCc
Q psy7773 925 EDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSD-WNPHQDLQAQDRAHRIGQKNE 990 (1281)
Q Consensus 925 ~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~-wnp~~~~Qa~gR~~RiGQ~k~ 990 (1281)
++..+++.+|++++.+ +|+||.+..+|+|++.|+.+||+|+. +--++..|-.||++|=+...-
T Consensus 520 ~eKd~vM~~Fk~~e~~---ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSy 583 (677)
T COG1200 520 AEKDAVMEAFKEGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSY 583 (677)
T ss_pred HHHHHHHHHHHcCCCc---EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceE
Confidence 9999999999997777 69999999999999999999999995 788999999999999655443
No 101
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.78 E-value=2.6e-17 Score=203.00 Aligned_cols=328 Identities=15% Similarity=0.148 Sum_probs=198.0
Q ss_pred ccccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHH---------HHHh---cCCCCCEEEEeCCccH
Q psy7773 540 IMVNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTY---------LMEK---KKNLGPYLVIVPLSTL 607 (1281)
Q Consensus 540 ~~~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~---------l~~~---~~~~~~~LIV~P~s~l 607 (1281)
.+....|++.|...-..++..+.++...|+..+||+|||.|.-.++.+ .+.. ....++++|++|...+
T Consensus 155 ~~~~~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreL 234 (675)
T PHA02653 155 PFSKIPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVAL 234 (675)
T ss_pred ccccccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHH
Confidence 344568899888888888888888999999999999999885333221 1111 2234689999998665
Q ss_pred -HHHHHHHHHHC-----CCCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCcccccc
Q psy7773 608 -SNWVLEFEKWA-----PSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNH 681 (1281)
Q Consensus 608 -~~W~~E~~~~~-----p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~ 681 (1281)
.|...++.... ++..+.+..|..... .. .......+++|+|..... .. -.++.+|||||||.+...
T Consensus 235 a~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~--~~-~t~~k~~~Ilv~T~~L~l---~~--L~~v~~VVIDEaHEr~~~ 306 (675)
T PHA02653 235 VRLHSITLLKSLGFDEIDGSPISLKYGSIPDE--LI-NTNPKPYGLVFSTHKLTL---NK--LFDYGTVIIDEVHEHDQI 306 (675)
T ss_pred HHHHHHHHHHHhCccccCCceEEEEECCcchH--Hh-hcccCCCCEEEEeCcccc---cc--cccCCEEEccccccCccc
Confidence 56677776432 334454444443321 10 111225689999865311 11 235789999999998766
Q ss_pred chHHHHHHHhhhcc-CcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHH
Q psy7773 682 HCKLTQTLNTFYNS-SHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRL 760 (1281)
Q Consensus 682 ~s~~~~~l~~~~~~-~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L 760 (1281)
...+...+...... ++.++||||+-. ....+ ..|+ ..|.. +...
T Consensus 307 ~DllL~llk~~~~~~rq~ILmSATl~~-dv~~l---~~~~---------------~~p~~-----I~I~----------- 351 (675)
T PHA02653 307 GDIIIAVARKHIDKIRSLFLMTATLED-DRDRI---KEFF---------------PNPAF-----VHIP----------- 351 (675)
T ss_pred hhHHHHHHHHhhhhcCEEEEEccCCcH-hHHHH---HHHh---------------cCCcE-----EEeC-----------
Confidence 55544444443222 367899999632 12222 1222 11100 0000
Q ss_pred HHhhhHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCC
Q psy7773 761 HKVLRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNH 840 (1281)
Q Consensus 761 ~~~l~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~h 840 (1281)
...+.+-..+.+....++.+...|-
T Consensus 352 ----------------grt~~pV~~~yi~~~~~~~~~~~y~--------------------------------------- 376 (675)
T PHA02653 352 ----------------GGTLFPISEVYVKNKYNPKNKRAYI--------------------------------------- 376 (675)
T ss_pred ----------------CCcCCCeEEEEeecCcccccchhhh---------------------------------------
Confidence 0000111111111111100000000
Q ss_pred ccchhhhHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHC--CCcEEEE
Q psy7773 841 PFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR--DFSYLRL 918 (1281)
Q Consensus 841 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~l 918 (1281)
...|..++..+.......+..+|||+.....++.+...|... ++.+..+
T Consensus 377 -----------------------------~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~L 427 (675)
T PHA02653 377 -----------------------------EEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYII 427 (675)
T ss_pred -----------------------------HHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEec
Confidence 000111111111111123557999999999999999999877 7999999
Q ss_pred eCCCChHHHHHHHHhh-cCCCCCeEEEEEeccccccccCcccCCEEEEeC---CC---------CChhhhhhHhHhHHhh
Q psy7773 919 DGTTKSEDRGELLRKF-NEPESKYFIFLLSTRAGGLGLNLQAADTVIIFD---SD---------WNPHQDLQAQDRAHRI 985 (1281)
Q Consensus 919 ~G~~~~~~R~~~i~~F-n~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D---~~---------wnp~~~~Qa~gR~~Ri 985 (1281)
||++++. .+.++.| ..+ ... +|+||+++++||+++++++||.++ .| .+...+.||.||++|.
T Consensus 428 HG~Lsq~--eq~l~~ff~~g--k~k-ILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~ 502 (675)
T PHA02653 428 HGKVPNI--DEILEKVYSSK--NPS-IIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV 502 (675)
T ss_pred cCCcCHH--HHHHHHHhccC--cee-EEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC
Confidence 9999964 5677787 443 344 599999999999999999999997 33 2677899999999997
Q ss_pred CCCCceEEEEEEeCCCH
Q psy7773 986 GQKNEVRVLRLITVNSV 1002 (1281)
Q Consensus 986 GQ~k~V~V~rli~~~ti 1002 (1281)
++-.+|+|.+....
T Consensus 503 ---~~G~c~rLyt~~~~ 516 (675)
T PHA02653 503 ---SPGTYVYFYDLDLL 516 (675)
T ss_pred ---CCCeEEEEECHHHh
Confidence 45788899987764
No 102
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.78 E-value=1.3e-17 Score=217.66 Aligned_cols=96 Identities=20% Similarity=0.202 Sum_probs=84.6
Q ss_pred cCCeEEEEechHHHHHHHHHHHHHCC---------------------------------CcEEEEeCCCChHHHHHHHHh
Q psy7773 887 TKHRVLMFCQMTQLMTILEDYFIWRD---------------------------------FSYLRLDGTTKSEDRGELLRK 933 (1281)
Q Consensus 887 ~~~kvLIFsq~~~~ld~L~~~L~~~g---------------------------------~~~~~l~G~~~~~~R~~~i~~ 933 (1281)
.+.++||||+.+..++.+...|+... +.+..+||+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 35679999999999999998886531 114567899999999999999
Q ss_pred hcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhh
Q psy7773 934 FNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRI 985 (1281)
Q Consensus 934 Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~Ri 985 (1281)
|+++... +|+||+++++|||+..+|+||+|++|.+...++|++||++|.
T Consensus 323 fK~G~Lr---vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSGELR---CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhCCce---EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 9987654 599999999999999999999999999999999999999985
No 103
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=1.6e-16 Score=192.59 Aligned_cols=413 Identities=13% Similarity=0.114 Sum_probs=226.6
Q ss_pred ccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHH----HHHHHHHHH
Q psy7773 542 VNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLS----NWVLEFEKW 617 (1281)
Q Consensus 542 ~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~----~W~~E~~~~ 617 (1281)
++-.++|-|+.|+--++. |.|.-..||.|||++++..+..... ....++||+|+..|. +|...|..+
T Consensus 100 lg~~p~~VQ~~~~~~ll~------G~Iae~~TGeGKTla~~lp~~~~al---~G~~v~VvTptreLA~qdae~~~~l~~~ 170 (656)
T PRK12898 100 LGQRHFDVQLMGGLALLS------GRLAEMQTGEGKTLTATLPAGTAAL---AGLPVHVITVNDYLAERDAELMRPLYEA 170 (656)
T ss_pred hCCCCChHHHHHHHHHhC------CCeeeeeCCCCcHHHHHHHHHHHhh---cCCeEEEEcCcHHHHHHHHHHHHHHHhh
Confidence 466788999999877663 3388899999999998766554332 235899999998883 466666666
Q ss_pred CCCCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHh-----hcccc-----------------------cccCceeE
Q psy7773 618 APSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFII-----KDKSV-----------------------LSKIQWKC 669 (1281)
Q Consensus 618 ~p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~-----~~~~~-----------------------l~~~~w~~ 669 (1281)
. ++.+.++.|...... .......+|+++|-..|. ..... +-.-.+++
T Consensus 171 l-Glsv~~i~gg~~~~~----r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~ 245 (656)
T PRK12898 171 L-GLTVGCVVEDQSPDE----RRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHF 245 (656)
T ss_pred c-CCEEEEEeCCCCHHH----HHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccce
Confidence 5 566666655432211 111235689999865542 22111 11136789
Q ss_pred EEEeCCccccccchHHHHHHHhhhccCcEEEeecCCCCCChhHHHHHH----hhhcCCCCCChhHHHHHhcccccCCccc
Q psy7773 670 MIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLTGTPLQNKLPELWALL----NFLLPSIFKSCSTFEQWFNAPFATTGEK 745 (1281)
Q Consensus 670 vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllLTgTPl~n~~~el~~ll----~fl~p~~~~~~~~f~~~f~~~~~~~~~~ 745 (1281)
+||||+..+.=. .++.-+++||.|-.....++|..+ .-|..+. .| . +......
T Consensus 246 aIvDEvDSiLiD------------eartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~-----~y----~--~d~~~~~ 302 (656)
T PRK12898 246 AIVDEADSVLID------------EARTPLIISAPAKEADEAEVYRQALELAAQLKEGE-----DY----T--IDAAEKR 302 (656)
T ss_pred eEeecccceeec------------cCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCC-----ce----E--EECCCCe
Confidence 999999976432 234458888855333223444333 2222221 00 0 0000011
Q ss_pred ccCCHHHHH-----------------HHHHHHHHhhhH-HHHHHhHHHHhhcCCCceEEEEEcCC-------CHHHHHHH
Q psy7773 746 VELNEEETI-----------------LIIRRLHKVLRP-FLLRRLKKEVESQLPEKVEYIIKCDM-------SGLQKLLY 800 (1281)
Q Consensus 746 ~~~~~~~~~-----------------~~~~~L~~~l~~-~~lRR~k~~v~~~lP~k~~~~v~~~l-------s~~q~~lY 800 (1281)
+.+++.... ...+.+...|+. +++.+-+..+ +.+....+|. .. +.++.-+.
T Consensus 303 v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYi---V~d~~V~ivD-~~TGR~~~gr~w~~GLh 378 (656)
T PRK12898 303 IELTEAGRARIAELAESLPPAWRGAVRREELVRQALSALHLFRRDEHYI---VRDGKVVIVD-EFTGRVMPDRSWEDGLH 378 (656)
T ss_pred EEEcHHHHHHHHHHhCcchhhcccchHHHHHHHHHHHHHHHHhcCCceE---EECCeEEEEE-CCCCeECCCCCcChHHH
Confidence 111111100 111222222222 1112111111 1122222221 22 23334444
Q ss_pred HHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhcCCCcc---------ccCCcc--cc
Q psy7773 801 QHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNNTV---------VSGPDI--YR 869 (1281)
Q Consensus 801 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~---------~~~~~~--~~ 869 (1281)
+.+..+.-....... .. ...-++.+.+....+++--.-........+...++..... ...+.. ..
T Consensus 379 QaieaKE~v~i~~e~-~t---~a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r~~~~~~v~~t 454 (656)
T PRK12898 379 QMIEAKEGCELTDPR-ET---LARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFLT 454 (656)
T ss_pred HHHHHhcCCCCCcCc-ee---eeeehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCccceecCCEEEeC
Confidence 444332211111100 00 0111222222222233321111111122222221111100 011111 23
Q ss_pred ccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEecc
Q psy7773 870 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 949 (1281)
Q Consensus 870 ~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~ 949 (1281)
...|+..|..++..+...+..|||||......+.|...|...|+++..|+|..+ +|...+..|....+. ++|+|+
T Consensus 455 ~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~---VlVATd 529 (656)
T PRK12898 455 AAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGR---ITVATN 529 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCc---EEEEcc
Confidence 356999999999887777788999999999999999999999999999999865 555666666543344 699999
Q ss_pred ccccccCcc---cCC-----EEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHH
Q psy7773 950 AGGLGLNLQ---AAD-----TVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAA 1009 (1281)
Q Consensus 950 agg~GlNL~---~ad-----~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~ 1009 (1281)
.+|+|+|+. .+. +||+||.|-|+..|.|++||++|.|..-.+. .|+ |.|+.++.+
T Consensus 530 mAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~--~~i---s~eD~l~~~ 592 (656)
T PRK12898 530 MAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYE--AIL---SLEDDLLQS 592 (656)
T ss_pred chhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEE--EEe---chhHHHHHh
Confidence 999999998 443 9999999999999999999999999765443 233 346666554
No 104
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.77 E-value=3.2e-17 Score=199.40 Aligned_cols=119 Identities=15% Similarity=0.150 Sum_probs=106.6
Q ss_pred cchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccc
Q psy7773 871 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 950 (1281)
Q Consensus 871 s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~a 950 (1281)
..|+..+...+..+...|..|||||.+....+.|...|...|+++..|+|. ..+|...+..|..+... ++|+|+.
T Consensus 388 ~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~---VtIATnm 462 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGA---VTIATNM 462 (745)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCce---EEEEecc
Confidence 468888888888888899999999999999999999999999999999998 67999999999765444 6999999
Q ss_pred cccccCccc-------CCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEE
Q psy7773 951 GGLGLNLQA-------ADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 994 (1281)
Q Consensus 951 gg~GlNL~~-------ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~ 994 (1281)
+|+|+|+.. .-+||.++.|-|+..|.|+.||++|.|..-....|
T Consensus 463 AgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ 513 (745)
T TIGR00963 463 AGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFF 513 (745)
T ss_pred ccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEE
Confidence 999999988 66999999999999999999999999998654433
No 105
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.75 E-value=2.2e-16 Score=184.77 Aligned_cols=85 Identities=19% Similarity=0.220 Sum_probs=71.9
Q ss_pred cCCeEEEEechHHHHHHHHHHHHHCC--CcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEE
Q psy7773 887 TKHRVLMFCQMTQLMTILEDYFIWRD--FSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVI 964 (1281)
Q Consensus 887 ~~~kvLIFsq~~~~ld~L~~~L~~~g--~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI 964 (1281)
.+.++||||.....++.+...|...| +.+..++|.++..+|.++. ... +|+||+++++|||+.. +.||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~~~---iLVaTdv~~rGiDi~~-~~vi 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------QFD---ILLGTSTVDVGVDFKR-DWLI 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------cCC---EEEEecHHhcccCCCC-ceEE
Confidence 56789999999999999999998764 5788999999999887653 222 6999999999999985 4666
Q ss_pred EeCCCCChhhhhhHhHhHH
Q psy7773 965 IFDSDWNPHQDLQAQDRAH 983 (1281)
Q Consensus 965 ~~D~~wnp~~~~Qa~gR~~ 983 (1281)
++ |-++..|+||+||++
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 66 678999999999974
No 106
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.75 E-value=3.8e-17 Score=194.73 Aligned_cols=354 Identities=16% Similarity=0.203 Sum_probs=216.4
Q ss_pred ccCcccHHHHHHHHHHHHhhcCCCC-eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHCC
Q psy7773 542 VNGKLKEYQIKGLEWMVSLYNNNLN-GILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWAP 619 (1281)
Q Consensus 542 ~~~~L~~yQ~~gv~~l~~~~~~~~~-gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~p 619 (1281)
....+|+||..+++.+...+.++.+ .+|+..||+|||.+|+++|..|+ +.+..+++|+++-. +++.|-..+|..+.|
T Consensus 162 s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~-r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P 240 (875)
T COG4096 162 SAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLI-KSGWVKRVLFLADRNALVDQAYGAFEDFLP 240 (875)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHH-hcchhheeeEEechHHHHHHHHHHHHHhCC
Confidence 3457999999999999988866654 68899999999999999999888 55677899999995 556888889999999
Q ss_pred CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc-------cccccCceeEEEEeCCccccccchHHHHHHHhh
Q psy7773 620 SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK-------SVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTF 692 (1281)
Q Consensus 620 ~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~-------~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~ 692 (1281)
....+.+.... .....+.|+|+||.++.... ..+..-.||+||||||||-- ...++.+..+
T Consensus 241 ~~~~~n~i~~~---------~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi---~~~~~~I~dY 308 (875)
T COG4096 241 FGTKMNKIEDK---------KGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI---YSEWSSILDY 308 (875)
T ss_pred Cccceeeeecc---------cCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH---HhhhHHHHHH
Confidence 87665543321 11236799999999997642 22334479999999999932 2223455554
Q ss_pred hccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHh
Q psy7773 693 YNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRL 772 (1281)
Q Consensus 693 ~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~ 772 (1281)
-...+++|||||-..--..-+.+++ ..|.... + |.
T Consensus 309 -FdA~~~gLTATP~~~~d~~T~~~F~-----------------g~Pt~~Y------s----------le----------- 343 (875)
T COG4096 309 -FDAATQGLTATPKETIDRSTYGFFN-----------------GEPTYAY------S----------LE----------- 343 (875)
T ss_pred -HHHHHHhhccCcccccccccccccC-----------------CCcceee------c----------HH-----------
Confidence 4556677799997632111111111 1111100 0 00
Q ss_pred HHHHhh--cCCCc-eEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHH
Q psy7773 773 KKEVES--QLPEK-VEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEE 849 (1281)
Q Consensus 773 k~~v~~--~lP~k-~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~ 849 (1281)
.-|.. -.|.+ +...+.++...+ -|..... ... .-.+..+. ++
T Consensus 344 -eAV~DGfLvpy~vi~i~~~~~~~G~---~~~~~se------------------rek------~~g~~i~~-------dd 388 (875)
T COG4096 344 -EAVEDGFLVPYKVIRIDTDFDLDGW---KPDAGSE------------------REK------LQGEAIDE-------DD 388 (875)
T ss_pred -HHhhccccCCCCceEEeeeccccCc---CcCccch------------------hhh------hhccccCc-------cc
Confidence 11111 12211 111222211110 0000000 000 00000000 00
Q ss_pred HHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhc---C---CeEEEEechHHHHHHHHHHHHHC----CCc-EEEE
Q psy7773 850 KYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKET---K---HRVLMFCQMTQLMTILEDYFIWR----DFS-YLRL 918 (1281)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~---~---~kvLIFsq~~~~ld~L~~~L~~~----g~~-~~~l 918 (1281)
.................-+.+.+.|..+... | .|.||||.....++.|...|... +.. ++.|
T Consensus 389 -------~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~I 461 (875)
T COG4096 389 -------QNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKI 461 (875)
T ss_pred -------ccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEE
Confidence 0000000001111123334455555444332 3 48999999999999999999765 223 4568
Q ss_pred eCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhh-------CCCCc-
Q psy7773 919 DGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRI-------GQKNE- 990 (1281)
Q Consensus 919 ~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~Ri-------GQ~k~- 990 (1281)
+|... +=+..|+.|-.. ..+-.+.+|.+.+..|+|.+.|-.+|++-.-.+-..+.|.+||+-|+ ||.|.
T Consensus 462 T~d~~--~~q~~Id~f~~k-e~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~ 538 (875)
T COG4096 462 TGDAE--QAQALIDNFIDK-EKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEF 538 (875)
T ss_pred eccch--hhHHHHHHHHhc-CCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCcccccee
Confidence 88766 445678888652 33334689999999999999999999999999999999999999995 34454
Q ss_pred eEEEEEEe
Q psy7773 991 VRVLRLIT 998 (1281)
Q Consensus 991 V~V~rli~ 998 (1281)
..|+.++-
T Consensus 539 F~ifDf~~ 546 (875)
T COG4096 539 FTIFDFVD 546 (875)
T ss_pred EEEEEhhh
Confidence 77777763
No 107
>KOG0346|consensus
Probab=99.72 E-value=9.4e-17 Score=176.88 Aligned_cols=314 Identities=16% Similarity=0.191 Sum_probs=198.4
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHH-HHHHHHHHhcCC----CC-CEEEEeCCccH-HHHHHHHHH-
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTI-ALLTYLMEKKKN----LG-PYLVIVPLSTL-SNWVLEFEK- 616 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai-~ll~~l~~~~~~----~~-~~LIV~P~s~l-~~W~~E~~~- 616 (1281)
++.-.|..++..++. +.+.+.-.-||+|||...+ -++..++..... .+ ..+|+||+.-| .|-...|.+
T Consensus 41 kpTlIQs~aIplaLE----gKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL 116 (569)
T KOG0346|consen 41 KPTLIQSSAIPLALE----GKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKL 116 (569)
T ss_pred Ccchhhhcccchhhc----CcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHH
Confidence 344567788877764 5567777889999999855 444445443322 22 47999998766 555666554
Q ss_pred --HCC-CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccc---cccCceeEEEEeCCccccccch--HHHHH
Q psy7773 617 --WAP-SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSV---LSKIQWKCMIIDEGHRMKNHHC--KLTQT 688 (1281)
Q Consensus 617 --~~p-~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~---l~~~~w~~vIvDEaHr~kn~~s--~~~~~ 688 (1281)
+|+ .++++-+..+...... ........+|||+|+..+..+... ...-...++|||||+-+..... .+.+.
T Consensus 117 ~~~c~k~lr~~nl~s~~sdsv~--~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l 194 (569)
T KOG0346|consen 117 VEYCSKDLRAINLASSMSDSVN--SVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKL 194 (569)
T ss_pred HHHHHHhhhhhhhhcccchHHH--HHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhcccHHHHHHH
Confidence 333 3444444322222111 122346789999999999876432 2223578999999998875442 22233
Q ss_pred HHhhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHH
Q psy7773 689 LNTFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFL 768 (1281)
Q Consensus 689 l~~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 768 (1281)
...+.+.-..++||||-- .+
T Consensus 195 ~~~LPr~~Q~~LmSATl~----dD-------------------------------------------------------- 214 (569)
T KOG0346|consen 195 RSHLPRIYQCFLMSATLS----DD-------------------------------------------------------- 214 (569)
T ss_pred HHhCCchhhheeehhhhh----hH--------------------------------------------------------
Confidence 322222233467777721 01
Q ss_pred HHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHH-hcCCccchhhh
Q psy7773 769 LRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRK-LCNHPFMFQNI 847 (1281)
Q Consensus 769 lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk-~~~hp~l~~~~ 847 (1281)
+..|.+ +|+.|.++.-.
T Consensus 215 --------------------------------------------------------------v~~LKkL~l~nPviLkl~ 232 (569)
T KOG0346|consen 215 --------------------------------------------------------------VQALKKLFLHNPVILKLT 232 (569)
T ss_pred --------------------------------------------------------------HHHHHHHhccCCeEEEec
Confidence 111111 12223322111
Q ss_pred HHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHH
Q psy7773 848 EEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDR 927 (1281)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R 927 (1281)
+.... .........-....-.|+-+|.-+|+--. -..|.|||.+..+..-.|.-+|..-|++.|.+.|.++..-|
T Consensus 233 e~el~----~~dqL~Qy~v~cse~DKflllyallKL~L-I~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR 307 (569)
T KOG0346|consen 233 EGELP----NPDQLTQYQVKCSEEDKFLLLYALLKLRL-IRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSR 307 (569)
T ss_pred cccCC----CcccceEEEEEeccchhHHHHHHHHHHHH-hcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccch
Confidence 10000 00000000001123357777777665433 34479999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCeEEEEEecc--------------------------c---------cccccCcccCCEEEEeCCCCCh
Q psy7773 928 GELLRKFNEPESKYFIFLLSTR--------------------------A---------GGLGLNLQAADTVIIFDSDWNP 972 (1281)
Q Consensus 928 ~~~i~~Fn~~~~~~~v~LlsT~--------------------------a---------gg~GlNL~~ad~VI~~D~~wnp 972 (1281)
.-++++||.|- |.| +|+|+ + .++|||++..++||+||.|-++
T Consensus 308 ~Hii~QFNkG~--Ydi-vIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~ 384 (569)
T KOG0346|consen 308 CHIIEQFNKGL--YDI-VIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETV 384 (569)
T ss_pred hhHHHHhhCcc--eeE-EEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCch
Confidence 99999999853 444 77777 2 3689999999999999999999
Q ss_pred hhhhhHhHhHHhhCCCCceEEE
Q psy7773 973 HQDLQAQDRAHRIGQKNEVRVL 994 (1281)
Q Consensus 973 ~~~~Qa~gR~~RiGQ~k~V~V~ 994 (1281)
..|++|+||+.|-|.+-.+.-|
T Consensus 385 ~sYIHRvGRTaRg~n~GtalSf 406 (569)
T KOG0346|consen 385 TSYIHRVGRTARGNNKGTALSF 406 (569)
T ss_pred HHHHHhccccccCCCCCceEEE
Confidence 9999999999998887654433
No 108
>KOG0344|consensus
Probab=99.72 E-value=9.4e-17 Score=184.53 Aligned_cols=311 Identities=15% Similarity=0.226 Sum_probs=203.6
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHH-HHHHhc----CCCCCEEEEeCCccH-HHHHHHHHHH
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLT-YLMEKK----KNLGPYLVIVPLSTL-SNWVLEFEKW 617 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~-~l~~~~----~~~~~~LIV~P~s~l-~~W~~E~~~~ 617 (1281)
..+.|.|..++..++. +.+++.+.++|+|||+..+.-+. +|.... ...-..+|+.|...| .|-..|+.++
T Consensus 157 ~~Pt~iq~~aipvfl~----~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~ 232 (593)
T KOG0344|consen 157 DEPTPIQKQAIPVFLE----KRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKY 232 (593)
T ss_pred CCCCcccchhhhhhhc----ccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhc
Confidence 3688999999988875 67889999999999998655443 333222 222368999997655 8888999887
Q ss_pred C--CCC--cEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccc----cccCceeEEEEeCCccccccc---hHHH
Q psy7773 618 A--PSA--NVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSV----LSKIQWKCMIIDEGHRMKNHH---CKLT 686 (1281)
Q Consensus 618 ~--p~~--~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~----l~~~~w~~vIvDEaHr~kn~~---s~~~ 686 (1281)
. +.. .+..+........ -........++++|.|+-.+...... +.-....++|+|||.++.+.. -++.
T Consensus 233 ~~~~~t~~~a~~~~~~~~~~q-k~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla 311 (593)
T KOG0344|consen 233 SIDEGTSLRAAQFSKPAYPSQ-KPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLA 311 (593)
T ss_pred CCCCCCchhhhhcccccchhh-ccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHH
Confidence 7 322 2222222211111 01122235688999999998776443 333456779999999998772 1222
Q ss_pred HHHHhhhccCc--EEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhh
Q psy7773 687 QTLNTFYNSSH--RVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVL 764 (1281)
Q Consensus 687 ~~l~~~~~~~~--rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l 764 (1281)
.++... .++. +=++|||- +..-| + +..++
T Consensus 312 ~I~sac-~s~~i~~a~FSat~--~~~VE--------------------E--------------------------~~~~i 342 (593)
T KOG0344|consen 312 DIYSAC-QSPDIRVALFSATI--SVYVE--------------------E--------------------------WAELI 342 (593)
T ss_pred HHHHHh-cCcchhhhhhhccc--cHHHH--------------------H--------------------------HHHHh
Confidence 223222 2222 22455441 00000 1 11111
Q ss_pred hHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccch
Q psy7773 765 RPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMF 844 (1281)
Q Consensus 765 ~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~ 844 (1281)
..+ .. .+.+...+.+ ++.+.| -++|
T Consensus 343 ~~~---------------~~--~vivg~~~sa-------------------------------~~~V~Q-------elvF 367 (593)
T KOG0344|consen 343 KSD---------------LK--RVIVGLRNSA-------------------------------NETVDQ-------ELVF 367 (593)
T ss_pred hcc---------------ce--eEEEecchhH-------------------------------hhhhhh-------hhee
Confidence 000 00 1111111111 001100 0000
Q ss_pred hhhHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHH-HHCCCcEEEEeCCCC
Q psy7773 845 QNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYF-IWRDFSYLRLDGTTK 923 (1281)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L-~~~g~~~~~l~G~~~ 923 (1281)
....-+|+-.+.+++.....+. +|||.|....+..|...| ...++.+..+||..+
T Consensus 368 ----------------------~gse~~K~lA~rq~v~~g~~PP--~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~ 423 (593)
T KOG0344|consen 368 ----------------------CGSEKGKLLALRQLVASGFKPP--VLIFVQSKERAKQLFEELEIYDNINVDVIHGERS 423 (593)
T ss_pred ----------------------eecchhHHHHHHHHHhccCCCC--eEEEEecHHHHHHHHHHhhhccCcceeeEecccc
Confidence 0123467788888887765444 999999999999999999 788999999999999
Q ss_pred hHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCc
Q psy7773 924 SEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNE 990 (1281)
Q Consensus 924 ~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~ 990 (1281)
+.+|...+++|+.+. +.| |+||.+.++|||+.+++.||+||.|-+-..|++++||++|.|+...
T Consensus 424 ~~qrde~~~~FR~g~--Iwv-LicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~ 487 (593)
T KOG0344|consen 424 QKQRDETMERFRIGK--IWV-LICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGK 487 (593)
T ss_pred hhHHHHHHHHHhccC--eeE-EEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcc
Confidence 999999999999854 555 9999999999999999999999999999999999999999999765
No 109
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.72 E-value=1.7e-15 Score=190.51 Aligned_cols=364 Identities=19% Similarity=0.172 Sum_probs=203.5
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc-cHHHHHHHHHHHCCCCcE
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS-TLSNWVLEFEKWAPSANV 623 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s-~l~~W~~E~~~~~p~~~~ 623 (1281)
.|.++|..++..+.... .+...+|...||+|||.+.+.++...+.. .+.+||+||.. +..||...|.++++ ..+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~fg-~~v 218 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRARFG-APV 218 (679)
T ss_pred CCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHhC-CCE
Confidence 69999999999887643 34567899999999999998877766643 35799999975 55999999998874 577
Q ss_pred EEEeCCHH--HHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCcccccc--ch-----HHHHHHHhhhc
Q psy7773 624 VAYKGSPL--ARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNH--HC-----KLTQTLNTFYN 694 (1281)
Q Consensus 624 ~~~~g~~~--~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~--~s-----~~~~~l~~~~~ 694 (1281)
.+++|... .+.........+..+|+|+|+..+.. .-.++.+|||||+|...-. .. .-...+.....
T Consensus 219 ~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~-----p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~ 293 (679)
T PRK05580 219 AVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALFL-----PFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLE 293 (679)
T ss_pred EEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhcc-----cccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhcc
Confidence 77776533 23222223345678999999987642 2235789999999986421 11 11112222234
Q ss_pred cCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHH
Q psy7773 695 SSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKK 774 (1281)
Q Consensus 695 ~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~ 774 (1281)
....+++||||-.. .++... .+.+ ....+. +|.
T Consensus 294 ~~~~il~SATps~~---s~~~~~----~g~~------------------~~~~l~--------------------~r~-- 326 (679)
T PRK05580 294 NIPVVLGSATPSLE---SLANAQ----QGRY------------------RLLRLT--------------------KRA-- 326 (679)
T ss_pred CCCEEEEcCCCCHH---HHHHHh----ccce------------------eEEEec--------------------ccc--
Confidence 56778999999421 111110 0000 000000 000
Q ss_pred HHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCC--c-cchhhh----
Q psy7773 775 EVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNH--P-FMFQNI---- 847 (1281)
Q Consensus 775 ~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~h--p-~l~~~~---- 847 (1281)
....+|. ..+ ++|....+ . .. ...-...+... +++.+.. + +++-..
T Consensus 327 -~~~~~p~--v~~--id~~~~~~-------~-----------~~-~~~ls~~l~~~---i~~~l~~g~qvll~~nrrGy~ 379 (679)
T PRK05580 327 -GGARLPE--VEI--IDMRELLR-------G-----------EN-GSFLSPPLLEA---IKQRLERGEQVLLFLNRRGYA 379 (679)
T ss_pred -ccCCCCe--EEE--Eechhhhh-------h-----------cc-cCCCCHHHHHH---HHHHHHcCCeEEEEEcCCCCC
Confidence 0001331 122 23322100 0 00 00011122222 2322211 1 121100
Q ss_pred HHHHHhhhcCCCccccCC-----------ccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHC--CCc
Q psy7773 848 EEKYCQHIGQNNTVVSGP-----------DIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR--DFS 914 (1281)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~-----------~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~--g~~ 914 (1281)
..-.|..++....-.... -....+|.-..+-.. +..-|. ..|..+..-.+.+++.|... +.+
T Consensus 380 ~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~---Cp~Cg~--~~l~~~g~G~e~~~e~l~~~fp~~~ 454 (679)
T PRK05580 380 PFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKA---CPECGS--TDLVPVGPGTERLEEELAELFPEAR 454 (679)
T ss_pred CceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCC---CCCCcC--CeeEEeeccHHHHHHHHHHhCCCCc
Confidence 011222222211000000 000111111111111 111111 12344444556677777665 889
Q ss_pred EEEEeCCCC--hHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCC---CCh---------hhhhhHhH
Q psy7773 915 YLRLDGTTK--SEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSD---WNP---------HQDLQAQD 980 (1281)
Q Consensus 915 ~~~l~G~~~--~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~---wnp---------~~~~Qa~g 980 (1281)
+.++||.+. ..++..+++.|.+++.+ +|++|...+.|+|++.++.|+++|.| ..| ..+.|+.|
T Consensus 455 v~~~~~d~~~~~~~~~~~l~~f~~g~~~---ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~G 531 (679)
T PRK05580 455 ILRIDRDTTRRKGALEQLLAQFARGEAD---ILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAG 531 (679)
T ss_pred EEEEeccccccchhHHHHHHHHhcCCCC---EEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHh
Confidence 999999986 46799999999987666 69999999999999999999988776 223 67999999
Q ss_pred hHHhhCCCCceEEEEEEeCC
Q psy7773 981 RAHRIGQKNEVRVLRLITVN 1000 (1281)
Q Consensus 981 R~~RiGQ~k~V~V~rli~~~ 1000 (1281)
|++|.|....|.|...-..+
T Consensus 532 RagR~~~~g~viiqT~~p~~ 551 (679)
T PRK05580 532 RAGRAEKPGEVLIQTYHPEH 551 (679)
T ss_pred hccCCCCCCEEEEEeCCCCC
Confidence 99998887777766544433
No 110
>KOG0334|consensus
Probab=99.72 E-value=7.9e-17 Score=196.55 Aligned_cols=318 Identities=19% Similarity=0.260 Sum_probs=214.6
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHH-HHHHHhcC---CCCC-EEEEeCCccH-HHHHHHHHH
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALL-TYLMEKKK---NLGP-YLVIVPLSTL-SNWVLEFEK 616 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll-~~l~~~~~---~~~~-~LIV~P~s~l-~~W~~E~~~ 616 (1281)
...++|.|-.++..+++ +..+|-...+|+|||+..+..+ .+.+.+.. ..|| +||+||+.-+ .|..+++.+
T Consensus 385 y~k~~~IQ~qAiP~Ims----GrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~k 460 (997)
T KOG0334|consen 385 YEKPTPIQAQAIPAIMS----GRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRK 460 (997)
T ss_pred CCCCcchhhhhcchhcc----CcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHH
Confidence 35788999988887764 7788888999999999875443 33332211 1255 6999998766 555555554
Q ss_pred HC---CCCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhc----cccccc-CceeEEEEeCCcccc--ccchHHH
Q psy7773 617 WA---PSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKD----KSVLSK-IQWKCMIIDEGHRMK--NHHCKLT 686 (1281)
Q Consensus 617 ~~---p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~----~~~l~~-~~w~~vIvDEaHr~k--n~~s~~~ 686 (1281)
|. ..-.+.+|.|+...... ..++.+ ..|+|||+..++.- ...+.. ....+||+|||.||. ....+.+
T Consensus 461 f~k~l~ir~v~vygg~~~~~qi--aelkRg-~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~ 537 (997)
T KOG0334|consen 461 FLKLLGIRVVCVYGGSGISQQI--AELKRG-AEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQIT 537 (997)
T ss_pred HHhhcCceEEEecCCccHHHHH--HHHhcC-CceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccc
Confidence 44 23345666666554432 223334 88999999876542 222322 356799999999985 4444555
Q ss_pred HHHHhhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhH
Q psy7773 687 QTLNTFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRP 766 (1281)
Q Consensus 687 ~~l~~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 766 (1281)
+++..+-.-+..++.|||=.
T Consensus 538 ~Ii~nlrpdrQtvlfSatfp------------------------------------------------------------ 557 (997)
T KOG0334|consen 538 RILQNLRPDRQTVLFSATFP------------------------------------------------------------ 557 (997)
T ss_pred hHHhhcchhhhhhhhhhhhh------------------------------------------------------------
Confidence 66665533334455555510
Q ss_pred HHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhh
Q psy7773 767 FLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQN 846 (1281)
Q Consensus 767 ~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~ 846 (1281)
-++.-+...|.. +|- +.++ . |..+... -+.+.
T Consensus 558 r~m~~la~~vl~-~Pv--eiiv--~--------~~svV~k-----------------------~V~q~------------ 589 (997)
T KOG0334|consen 558 RSMEALARKVLK-KPV--EIIV--G--------GRSVVCK-----------------------EVTQV------------ 589 (997)
T ss_pred HHHHHHHHHhhc-CCe--eEEE--c--------cceeEec-----------------------cceEE------------
Confidence 001111122222 221 1111 0 0000000 00000
Q ss_pred hHHHHHhhhcCCCccccCCcccc-ccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChH
Q psy7773 847 IEEKYCQHIGQNNTVVSGPDIYR-TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSE 925 (1281)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~-~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~ 925 (1281)
-.+.. .+.|+..|..+|....+ ..++||||+...-++.|..-|...||.+..|||+.++.
T Consensus 590 ------------------v~V~~~e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~ 650 (997)
T KOG0334|consen 590 ------------------VRVCAIENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQH 650 (997)
T ss_pred ------------------EEEecCchHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchH
Confidence 01111 35689999999988777 55799999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeC
Q psy7773 926 DRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITV 999 (1281)
Q Consensus 926 ~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~ 999 (1281)
+|..++..|.++..+ +|++|++++.||+......||+||.|-....|.+|.||++|.|.+- .-|.|++.
T Consensus 651 dR~sti~dfK~~~~~---LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 651 DRSSTIEDFKNGVVN---LLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred HHHhHHHHHhccCce---EEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 999999999986554 7999999999999999999999999999999999999999999887 55566665
No 111
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.72 E-value=2.9e-16 Score=205.47 Aligned_cols=131 Identities=19% Similarity=0.279 Sum_probs=94.7
Q ss_pred ccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCCC
Q psy7773 542 VNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAPS 620 (1281)
Q Consensus 542 ~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p~ 620 (1281)
.+..|+|+|..++..++ .+.+.++..+||+|||..++.++.++.. ....+|||+|+..| .|+...|..++..
T Consensus 75 ~g~~p~~iQ~~~i~~il----~G~d~vi~ApTGsGKT~f~l~~~~~l~~---~g~~vLIL~PTreLa~Qi~~~l~~l~~~ 147 (1171)
T TIGR01054 75 VGSEPWSIQKMWAKRVL----RGDSFAIIAPTGVGKTTFGLAMSLFLAK---KGKRCYIILPTTLLVIQVAEKISSLAEK 147 (1171)
T ss_pred cCCCCcHHHHHHHHHHh----CCCeEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEeCHHHHHHHHHHHHHHHHHh
Confidence 34579999999887766 4678899999999999866555544432 23579999998666 8899999888753
Q ss_pred C--c---EEEEeCCHHHH--HHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccc
Q psy7773 621 A--N---VVAYKGSPLAR--RALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKN 680 (1281)
Q Consensus 621 ~--~---~~~~~g~~~~r--~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn 680 (1281)
. . +.+|+|..... .........+.++|+|+|+..|......+.. ++++|||||||+|..
T Consensus 148 ~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 148 AGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred cCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeChHhhhh
Confidence 2 2 22465543222 2222334456799999999999877665554 799999999999965
No 112
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.70 E-value=1.5e-15 Score=192.69 Aligned_cols=333 Identities=17% Similarity=0.188 Sum_probs=222.8
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHC---C-
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWA---P- 619 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~---p- 619 (1281)
.|+.||.++++.+. ++.+.|++-.||+|||...+..|...+.+.. ...+|+|-|..-| ......|.+|. |
T Consensus 70 ~lY~HQ~~A~~~~~----~G~~vvVtTgTgSGKTe~FllPIld~~l~~~-~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~ 144 (851)
T COG1205 70 RLYSHQVDALRLIR----EGRNVVVTTGTGSGKTESFLLPILDHLLRDP-SARALLLYPTNALANDQAERLRELISDLPG 144 (851)
T ss_pred cccHHHHHHHHHHH----CCCCEEEECCCCCchhHHHHHHHHHHHhhCc-CccEEEEechhhhHhhHHHHHHHHHHhCCC
Confidence 49999999998776 4789999999999999997766665553433 3489999997666 56677777775 3
Q ss_pred CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhc------ccccccCceeEEEEeCCcccccc-chH---HHHHH
Q psy7773 620 SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKD------KSVLSKIQWKCMIIDEGHRMKNH-HCK---LTQTL 689 (1281)
Q Consensus 620 ~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~------~~~l~~~~w~~vIvDEaHr~kn~-~s~---~~~~l 689 (1281)
.+.+..|.|....... ..+..+..+|+||||++|-.. ...+..-++.+|||||+|-..+- .|. +.+.|
T Consensus 145 ~v~~~~y~Gdt~~~~r--~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL 222 (851)
T COG1205 145 KVTFGRYTGDTPPEER--RAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRL 222 (851)
T ss_pred cceeeeecCCCChHHH--HHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHH
Confidence 4667888887443322 133357899999999998541 11111225899999999998753 233 33444
Q ss_pred Hhhhc----cCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhh
Q psy7773 690 NTFYN----SSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLR 765 (1281)
Q Consensus 690 ~~~~~----~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 765 (1281)
..+++ ....++.|||- .++.|+. .+.+..++.....
T Consensus 223 ~~~~~~~~~~~q~i~~SAT~--~np~e~~-----------------~~l~~~~f~~~v~--------------------- 262 (851)
T COG1205 223 LRRLRRYGSPLQIICTSATL--ANPGEFA-----------------EELFGRDFEVPVD--------------------- 262 (851)
T ss_pred HHHHhccCCCceEEEEeccc--cChHHHH-----------------HHhcCCcceeecc---------------------
Confidence 44333 45678999992 2222221 1222222211000
Q ss_pred HHHHHHhHHHHhhcCCCceEE-EEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccch
Q psy7773 766 PFLLRRLKKEVESQLPEKVEY-IIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMF 844 (1281)
Q Consensus 766 ~~~lRR~k~~v~~~lP~k~~~-~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~ 844 (1281)
...-|....+ +++-+........
T Consensus 263 -----------~~g~~~~~~~~~~~~p~~~~~~~~--------------------------------------------- 286 (851)
T COG1205 263 -----------EDGSPRGLRYFVRREPPIRELAES--------------------------------------------- 286 (851)
T ss_pred -----------CCCCCCCceEEEEeCCcchhhhhh---------------------------------------------
Confidence 0011111111 1111110000000
Q ss_pred hhhHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHH----HHHHHCC----CcEE
Q psy7773 845 QNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILE----DYFIWRD----FSYL 916 (1281)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~----~~L~~~g----~~~~ 916 (1281)
..-.+...+..++..+...+-++|+|+.+...+..+. ..+...+ ..+.
T Consensus 287 ------------------------~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~ 342 (851)
T COG1205 287 ------------------------IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVS 342 (851)
T ss_pred ------------------------cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhhee
Confidence 0113455566667777778999999999999998886 4444445 6678
Q ss_pred EEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCC-ChhhhhhHhHhHHhhCCCCceEEEE
Q psy7773 917 RLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDW-NPHQDLQAQDRAHRIGQKNEVRVLR 995 (1281)
Q Consensus 917 ~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~w-np~~~~Qa~gR~~RiGQ~k~V~V~r 995 (1281)
.+.|++...+|.++...|+.++.. +++||.+.-.|+++.+.+.||.+..|- +...+.|+.||++|-||.- .++.
T Consensus 343 ~~~~~~~~~er~~ie~~~~~g~~~---~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~--l~~~ 417 (851)
T COG1205 343 TYRAGLHREERRRIEAEFKEGELL---GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQES--LVLV 417 (851)
T ss_pred eccccCCHHHHHHHHHHHhcCCcc---EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCc--eEEE
Confidence 899999999999999999998776 799999999999999999999999999 8899999999999999543 3333
Q ss_pred EEeCCCHHHHHHHH
Q psy7773 996 LITVNSVEERILAA 1009 (1281)
Q Consensus 996 li~~~tiEe~I~~~ 1009 (1281)
..-.+.++.....-
T Consensus 418 v~~~~~~d~yy~~~ 431 (851)
T COG1205 418 VLRSDPLDSYYLRH 431 (851)
T ss_pred EeCCCccchhhhhC
Confidence 33367777666543
No 113
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.69 E-value=1.4e-15 Score=192.35 Aligned_cols=107 Identities=16% Similarity=0.167 Sum_probs=91.6
Q ss_pred CCeEEEEechHHHHHHHHHHHHH---CCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEE
Q psy7773 888 KHRVLMFCQMTQLMTILEDYFIW---RDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVI 964 (1281)
Q Consensus 888 ~~kvLIFsq~~~~ld~L~~~L~~---~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI 964 (1281)
+..+|||+.....++.+...|.. .++.++.+||+++.++|..+++.|..+.. . +|+||++++.||+++++++||
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~r--k-VlVATnIAErgItIp~V~~VI 285 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRR--K-VVLATNIAETSLTIEGIRVVI 285 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCe--E-EEEecchHhhcccccCceEEE
Confidence 45699999999999999999976 47899999999999999999999987543 3 589999999999999999999
Q ss_pred EeCCC----CChhh--------------hhhHhHhHHhhCCCCceEEEEEEeCC
Q psy7773 965 IFDSD----WNPHQ--------------DLQAQDRAHRIGQKNEVRVLRLITVN 1000 (1281)
Q Consensus 965 ~~D~~----wnp~~--------------~~Qa~gR~~RiGQ~k~V~V~rli~~~ 1000 (1281)
.++.+ +||.. +.||.||++|. ++-.+|+|++..
T Consensus 286 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~ 336 (819)
T TIGR01970 286 DSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEE 336 (819)
T ss_pred EcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHH
Confidence 99876 45554 78999999887 466788998864
No 114
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.69 E-value=2.7e-15 Score=181.96 Aligned_cols=295 Identities=19% Similarity=0.172 Sum_probs=183.2
Q ss_pred EecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc-cHHHHHHHHHHHCCCCcEEEEeCCHH--HHHHHHhhhccCCc
Q psy7773 569 LADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS-TLSNWVLEFEKWAPSANVVAYKGSPL--ARRALQGRMKNSKF 645 (1281)
Q Consensus 569 LademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s-~l~~W~~E~~~~~p~~~~~~~~g~~~--~r~~~~~~~~~~~~ 645 (1281)
|..+||+|||.+.+.++.+.+.. .+.+||++|.. +..|+...|...++ ..+.++++... .+.........+..
T Consensus 2 L~g~TGsGKT~v~l~~i~~~l~~---g~~vLvlvP~i~L~~Q~~~~l~~~f~-~~v~vlhs~~~~~er~~~~~~~~~g~~ 77 (505)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKVLAL---GKSVLVLVPEIALTPQMIQRFKYRFG-SQVAVLHSGLSDSEKLQAWRKVKNGEI 77 (505)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHhC-CcEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 55689999999998888777643 34799999974 55999999998874 56777776532 33232333445678
Q ss_pred cEEEechHHHhhcccccccCceeEEEEeCCcccc--ccch-----HHHHHHHhhhccCcEEEeecCCCCCChhHHHHHHh
Q psy7773 646 NVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMK--NHHC-----KLTQTLNTFYNSSHRVLLTGTPLQNKLPELWALLN 718 (1281)
Q Consensus 646 ~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~k--n~~s-----~~~~~l~~~~~~~~rllLTgTPl~n~~~el~~ll~ 718 (1281)
+|||+|+..+.. ...++++|||||.|... .... .-...+.........+++||||. ++.++...+
T Consensus 78 ~IVVGTrsalf~-----p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPs---les~~~~~~ 149 (505)
T TIGR00595 78 LVVIGTRSALFL-----PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPS---LESYHNAKQ 149 (505)
T ss_pred CEEECChHHHcC-----cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCC---HHHHHHHhc
Confidence 999999987742 22357999999999874 2111 11122333335667899999995 221111100
Q ss_pred hhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHH
Q psy7773 719 FLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKL 798 (1281)
Q Consensus 719 fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~ 798 (1281)
+.+ ....+. +|.. ...+|. ..++ +|..
T Consensus 150 ----g~~------------------~~~~l~--------------------~r~~---~~~~p~--v~vi--d~~~---- 176 (505)
T TIGR00595 150 ----KAY------------------RLLVLT--------------------RRVS---GRKPPE--VKLI--DMRK---- 176 (505)
T ss_pred ----CCe------------------EEeech--------------------hhhc---CCCCCe--EEEE--eccc----
Confidence 000 000000 0000 001111 1111 0000
Q ss_pred HHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhcCCCccccCCccccccchHHHHH
Q psy7773 799 LYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLD 878 (1281)
Q Consensus 799 lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~ 878 (1281)
. ... . ..| ..|.
T Consensus 177 -----------------------~-----------~~~---~----------------------------~ls---~~l~ 188 (505)
T TIGR00595 177 -----------------------E-----------PRQ---S----------------------------FLS---PELI 188 (505)
T ss_pred -----------------------c-----------ccc---C----------------------------Ccc---HHHH
Confidence 0 000 0 001 2244
Q ss_pred HHhhhhhhcCCeEEEEechHH-----------------------------------------------------------
Q psy7773 879 RILPKFKETKHRVLMFCQMTQ----------------------------------------------------------- 899 (1281)
Q Consensus 879 ~lL~~~~~~~~kvLIFsq~~~----------------------------------------------------------- 899 (1281)
+.+.+..+.|+.||||.+.+.
T Consensus 189 ~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g 268 (505)
T TIGR00595 189 TAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKG 268 (505)
T ss_pred HHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeec
Confidence 445555566777888843211
Q ss_pred -HHHHHHHHHHHC--CCcEEEEeCCCChHHH--HHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCC---C
Q psy7773 900 -LMTILEDYFIWR--DFSYLRLDGTTKSEDR--GELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDW---N 971 (1281)
Q Consensus 900 -~ld~L~~~L~~~--g~~~~~l~G~~~~~~R--~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~w---n 971 (1281)
-.+.+++.|... +.++.++|+.++...+ ..+++.|.+++.+ +|++|...+.|+|++.++.|+++|.|- .
T Consensus 269 ~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~---ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~ 345 (505)
T TIGR00595 269 YGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKAD---ILIGTQMIAKGHHFPNVTLVGVLDADSGLHS 345 (505)
T ss_pred ccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCC---EEEeCcccccCCCCCcccEEEEEcCcccccC
Confidence 146677777665 7899999999887665 8999999987666 699999999999999999998877663 2
Q ss_pred ---------hhhhhhHhHhHHhhCCCCceEEEEEEeC
Q psy7773 972 ---------PHQDLQAQDRAHRIGQKNEVRVLRLITV 999 (1281)
Q Consensus 972 ---------p~~~~Qa~gR~~RiGQ~k~V~V~rli~~ 999 (1281)
...+.|+.||++|.+....|.|..+-..
T Consensus 346 pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 346 PDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred cccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 3678999999999888777765544443
No 115
>KOG0327|consensus
Probab=99.68 E-value=2.7e-16 Score=172.39 Aligned_cols=315 Identities=18% Similarity=0.260 Sum_probs=213.6
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHH-HHHHHHHCCCC--
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNW-VLEFEKWAPSA-- 621 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W-~~E~~~~~p~~-- 621 (1281)
++...|..|+.=.. ++.+.+.-...|+|||.+....+...+.......-+||++|...|.+. ..-+..++...
T Consensus 48 kPSaIQqraI~p~i----~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~ 123 (397)
T KOG0327|consen 48 KPSAIQQRAILPCI----KGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDV 123 (397)
T ss_pred CchHHHhccccccc----cCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccce
Confidence 66777888775444 578888888899999999666555554332233357999999988544 34445555544
Q ss_pred cEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhh--cccccccCceeEEEEeCCcccc--ccchHHHHHHHhhhccCc
Q psy7773 622 NVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIK--DKSVLSKIQWKCMIIDEGHRMK--NHHCKLTQTLNTFYNSSH 697 (1281)
Q Consensus 622 ~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~--~~~~l~~~~w~~vIvDEaHr~k--n~~s~~~~~l~~~~~~~~ 697 (1281)
++....|....+. -.........+|++.|+..+.. +...|......+.|+|||..++ +...+++.++..+....+
T Consensus 124 ~v~~~igg~~~~~-~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQ 202 (397)
T KOG0327|consen 124 SVHACIGGTNVRR-EDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQ 202 (397)
T ss_pred eeeeecCcccchh-hhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHHHHHHHHcCcchh
Confidence 4443334322221 1223344568999999977643 2346666678999999999987 556677777777756677
Q ss_pred EEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHHh
Q psy7773 698 RVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVE 777 (1281)
Q Consensus 698 rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~ 777 (1281)
.+++|||-. .++.-+- .++...|....
T Consensus 203 v~l~SAT~p----~~vl~vt--------------~~f~~~pv~i~----------------------------------- 229 (397)
T KOG0327|consen 203 VVLLSATMP----SDVLEVT--------------KKFMREPVRIL----------------------------------- 229 (397)
T ss_pred heeecccCc----HHHHHHH--------------HHhccCceEEE-----------------------------------
Confidence 889999931 1110000 00001110000
Q ss_pred hcCCCceEEEEEcCCCH-HHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhc
Q psy7773 778 SQLPEKVEYIIKCDMSG-LQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIG 856 (1281)
Q Consensus 778 ~~lP~k~~~~v~~~ls~-~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 856 (1281)
+-+-.++. -++.+|-.
T Consensus 230 ---------vkk~~ltl~gikq~~i~------------------------------------------------------ 246 (397)
T KOG0327|consen 230 ---------VKKDELTLEGIKQFYIN------------------------------------------------------ 246 (397)
T ss_pred ---------ecchhhhhhheeeeeee------------------------------------------------------
Confidence 00000000 00000000
Q ss_pred CCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcC
Q psy7773 857 QNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNE 936 (1281)
Q Consensus 857 ~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~ 936 (1281)
.....|+..|..+.. .-...+|||+...-++.|...|..+|+....++|.+...+|..++..|+.
T Consensus 247 -----------v~k~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~ 311 (397)
T KOG0327|consen 247 -----------VEKEEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRS 311 (397)
T ss_pred -----------ccccccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhc
Confidence 001117777777766 23348999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCC
Q psy7773 937 PESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVN 1000 (1281)
Q Consensus 937 ~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~ 1000 (1281)
+.+. +|++|...++|||++.++.||+||.|-|+..|++|+||++|.|.+- .+..+++..
T Consensus 312 gssr---vlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg--~~in~v~~~ 370 (397)
T KOG0327|consen 312 GSSR---VLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKG--VAINFVTEE 370 (397)
T ss_pred CCce---EEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCc--eeeeeehHh
Confidence 8877 6999999999999999999999999999999999999999999764 445555543
No 116
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.67 E-value=1.3e-15 Score=190.48 Aligned_cols=309 Identities=20% Similarity=0.130 Sum_probs=192.6
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHC-CCCc
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWA-PSAN 622 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~-p~~~ 622 (1281)
+|+|.|..+|.-.+. .+.|.|+|.+||+|||++|...|...+... .++++.|||. ++..+-..+|.+|. -+.+
T Consensus 31 el~~~qq~av~~~~~---~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~Ek~~~~~~~~~~Gir 105 (766)
T COG1204 31 ELFNPQQEAVEKGLL---SDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEEKYEEFSRLEELGIR 105 (766)
T ss_pred HhhHHHHHHhhcccc---CCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHHHHHhhhHHhcCCE
Confidence 899999999975554 378999999999999999988877766443 4799999996 45577788888443 2788
Q ss_pred EEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhccccc--ccCceeEEEEeCCcccccc-c-----hHHHHHHHhhhc
Q psy7773 623 VVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVL--SKIQWKCMIIDEGHRMKNH-H-----CKLTQTLNTFYN 694 (1281)
Q Consensus 623 ~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l--~~~~w~~vIvDEaHr~kn~-~-----s~~~~~l~~~~~ 694 (1281)
|..+.|+...... ....++|+||||+.+-.-.... -....++|||||+|-+... . +-.++.. .+..
T Consensus 106 V~~~TgD~~~~~~-----~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~-~~~~ 179 (766)
T COG1204 106 VGISTGDYDLDDE-----RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMR-RLNE 179 (766)
T ss_pred EEEecCCcccchh-----hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHH-hhCc
Confidence 9999987554321 2367899999999885432221 1226789999999999765 1 1222222 2212
Q ss_pred cCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHH
Q psy7773 695 SSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKK 774 (1281)
Q Consensus 695 ~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~ 774 (1281)
.-+.++||||- .|..|+...| +...+.+.-.|..++.
T Consensus 180 ~~rivgLSATl--pN~~evA~wL---~a~~~~~~~rp~~l~~-------------------------------------- 216 (766)
T COG1204 180 LIRIVGLSATL--PNAEEVADWL---NAKLVESDWRPVPLRR-------------------------------------- 216 (766)
T ss_pred ceEEEEEeeec--CCHHHHHHHh---CCcccccCCCCccccc--------------------------------------
Confidence 24668999993 2334433322 2222111100000000
Q ss_pred HHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhh
Q psy7773 775 EVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQH 854 (1281)
Q Consensus 775 ~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~ 854 (1281)
..|....... + . +...
T Consensus 217 ----~v~~~~~~~~-~---------------------~-------~~~k------------------------------- 232 (766)
T COG1204 217 ----GVPYVGAFLG-A---------------------D-------GKKK------------------------------- 232 (766)
T ss_pred ----CCccceEEEE-e---------------------c-------Cccc-------------------------------
Confidence 0010000000 0 0 0000
Q ss_pred hcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHH----CC------------------
Q psy7773 855 IGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIW----RD------------------ 912 (1281)
Q Consensus 855 ~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~----~g------------------ 912 (1281)
.....+...+..++....+.+..||||++++.........|.. ..
T Consensus 233 -------------~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~ 299 (766)
T COG1204 233 -------------TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIP 299 (766)
T ss_pred -------------cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccc
Confidence 0011122333444445556788899999988765555444441 00
Q ss_pred ---------------CcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEE-----eC-----
Q psy7773 913 ---------------FSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVII-----FD----- 967 (1281)
Q Consensus 913 ---------------~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~-----~D----- 967 (1281)
..+..-|.+++..+|+-+-+.|+++.-+ +|+||...+.|+||+ |++||+ ||
T Consensus 300 ~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ik---Vlv~TpTLA~GVNLP-A~~VIIk~~~~y~~~~g~ 375 (766)
T COG1204 300 ETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIK---VLVSTPTLAAGVNLP-ARTVIIKDTRRYDPKGGI 375 (766)
T ss_pred cccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCce---EEEechHHhhhcCCc-ceEEEEeeeEEEcCCCCe
Confidence 1123456778889999999999986544 599999999999997 455555 55
Q ss_pred CCCChhhhhhHhHhHHhhCCC
Q psy7773 968 SDWNPHQDLQAQDRAHRIGQK 988 (1281)
Q Consensus 968 ~~wnp~~~~Qa~gR~~RiGQ~ 988 (1281)
-+-++..++|-.|||+|.|=.
T Consensus 376 ~~i~~~dv~QM~GRAGRPg~d 396 (766)
T COG1204 376 VDIPVLDVLQMAGRAGRPGYD 396 (766)
T ss_pred EECchhhHhhccCcCCCCCcC
Confidence 345688899999999998853
No 117
>PRK14701 reverse gyrase; Provisional
Probab=99.67 E-value=1.5e-15 Score=202.49 Aligned_cols=301 Identities=15% Similarity=0.222 Sum_probs=189.4
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCC--
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAP-- 619 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p-- 619 (1281)
+.++++.|..++..++. +.+.++..+||+|||+..+.++..+. . ....+|||+|+..| .|....|..++.
T Consensus 77 G~~pt~iQ~~~i~~il~----G~d~li~APTGsGKTl~~~~~al~~~-~--~g~~aLVl~PTreLa~Qi~~~l~~l~~~~ 149 (1638)
T PRK14701 77 GFEFWSIQKTWAKRILR----GKSFSIVAPTGMGKSTFGAFIALFLA-L--KGKKCYIILPTTLLVKQTVEKIESFCEKA 149 (1638)
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEEcCCCCHHHHHHHHHHHHH-h--cCCeEEEEECHHHHHHHHHHHHHHHHhhc
Confidence 44799999999988774 67889999999999984333332222 1 22479999998665 888888888764
Q ss_pred --CCcEEEEeCCHHHHHH--HHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccc-------------cc
Q psy7773 620 --SANVVAYKGSPLARRA--LQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKN-------------HH 682 (1281)
Q Consensus 620 --~~~~~~~~g~~~~r~~--~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn-------------~~ 682 (1281)
+..+..++|....... .......+.++|+|+|++.|......+...++++|||||||+|.. ..
T Consensus 150 ~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~knid~~L~llGF~ 229 (1638)
T PRK14701 150 NLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASKNIDRSLQLLGFY 229 (1638)
T ss_pred CCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccccccccchhhhcCCCh
Confidence 3455667666433322 223344567999999999887654444346789999999999853 21
Q ss_pred hHHHH----HHH------------------h---hhccC-c-EEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHh
Q psy7773 683 CKLTQ----TLN------------------T---FYNSS-H-RVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWF 735 (1281)
Q Consensus 683 s~~~~----~l~------------------~---~~~~~-~-rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f 735 (1281)
..... ++. . .++.. . .++.|||.-.. .+...++
T Consensus 230 ~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~------------------ 289 (1638)
T PRK14701 230 EEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKLY------------------ 289 (1638)
T ss_pred HHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHHh------------------
Confidence 11111 111 0 00112 2 24568875321 0000000
Q ss_pred cccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCc
Q psy7773 736 NAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSE 815 (1281)
Q Consensus 736 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~ 815 (1281)
| +. .. +.+.. .
T Consensus 290 ----------------------------------~----~~-------l~--f~v~~----------------------~ 300 (1638)
T PRK14701 290 ----------------------------------R----EL-------LG--FEVGS----------------------G 300 (1638)
T ss_pred ----------------------------------h----cC-------eE--EEecC----------------------C
Confidence 0 00 00 00000 0
Q ss_pred cCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEe
Q psy7773 816 KGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFC 895 (1281)
Q Consensus 816 ~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFs 895 (1281)
. .. ++.+ .|.|+.. ....| ..|..+|..+ +..+||||
T Consensus 301 ~-----~~----------lr~i-~~~yi~~-----------------------~~~~k-~~L~~ll~~~---g~~gIVF~ 337 (1638)
T PRK14701 301 R-----SA----------LRNI-VDVYLNP-----------------------EKIIK-EHVRELLKKL---GKGGLIFV 337 (1638)
T ss_pred C-----CC----------CCCc-EEEEEEC-----------------------CHHHH-HHHHHHHHhC---CCCeEEEE
Confidence 0 00 0000 0111000 00112 3455566554 45699999
Q ss_pred chHHH---HHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEec----cccccccCccc-CCEEEEeC
Q psy7773 896 QMTQL---MTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLST----RAGGLGLNLQA-ADTVIIFD 967 (1281)
Q Consensus 896 q~~~~---ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT----~agg~GlNL~~-ad~VI~~D 967 (1281)
+.... ++.|..+|...|+++..+||. |..++++|.+++.. +|++| .++++|||++. ..+||+||
T Consensus 338 ~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~---VLVaT~s~~gvaaRGIDiP~~Vryvi~~~ 409 (1638)
T PRK14701 338 PIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEID---YLIGVATYYGTLVRGLDLPERIRFAVFYG 409 (1638)
T ss_pred eccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCC---EEEEecCCCCeeEecCccCCccCEEEEeC
Confidence 98764 589999999999999999994 99999999997766 58888 47899999998 99999999
Q ss_pred CCC---ChhhhhhHh-------------HhHHhhCCCCc
Q psy7773 968 SDW---NPHQDLQAQ-------------DRAHRIGQKNE 990 (1281)
Q Consensus 968 ~~w---np~~~~Qa~-------------gR~~RiGQ~k~ 990 (1281)
.|- |...+.|.. ||++|-|..-+
T Consensus 410 ~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~ 448 (1638)
T PRK14701 410 VPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIE 448 (1638)
T ss_pred CCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcch
Confidence 998 766666655 99999887543
No 118
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.66 E-value=4.4e-15 Score=188.42 Aligned_cols=108 Identities=15% Similarity=0.159 Sum_probs=91.4
Q ss_pred CCeEEEEechHHHHHHHHHHHHH---CCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEE
Q psy7773 888 KHRVLMFCQMTQLMTILEDYFIW---RDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVI 964 (1281)
Q Consensus 888 ~~kvLIFsq~~~~ld~L~~~L~~---~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI 964 (1281)
+..+|||+.....++.+...|.. .++.++.+||+++..+|..++..|..+.. . +|+||++++.||+++++++||
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~r--k-VlvATnIAErsLtIp~V~~VI 288 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRR--K-VVLATNIAETSLTIEGIRLVV 288 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCe--E-EEEecchHHhcccccCceEEE
Confidence 46799999999999999999986 57889999999999999999999987543 3 599999999999999999999
Q ss_pred EeCCC----CCh--------------hhhhhHhHhHHhhCCCCceEEEEEEeCCC
Q psy7773 965 IFDSD----WNP--------------HQDLQAQDRAHRIGQKNEVRVLRLITVNS 1001 (1281)
Q Consensus 965 ~~D~~----wnp--------------~~~~Qa~gR~~RiGQ~k~V~V~rli~~~t 1001 (1281)
.++.+ ++| ..+.||.||++|. .+-.+|+|++...
T Consensus 289 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~ 340 (812)
T PRK11664 289 DSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQ 340 (812)
T ss_pred ECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHH
Confidence 97765 222 3688999999886 3678899988653
No 119
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.66 E-value=7.1e-14 Score=150.31 Aligned_cols=319 Identities=16% Similarity=0.181 Sum_probs=210.0
Q ss_pred ccccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHC
Q psy7773 540 IMVNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWA 618 (1281)
Q Consensus 540 ~~~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~ 618 (1281)
..+.|+|.|+|..+.+-++....+....|+..-+|+|||-+....+.+.+.. .+.+.|..|. .++..-...+..-|
T Consensus 92 L~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~---G~~vciASPRvDVclEl~~Rlk~aF 168 (441)
T COG4098 92 LQWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ---GGRVCIASPRVDVCLELYPRLKQAF 168 (441)
T ss_pred eeeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc---CCeEEEecCcccchHHHHHHHHHhh
Confidence 4468999999999999999999999999999999999999988888877743 3688899994 56677777788888
Q ss_pred CCCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCcccc--ccchHHHHHHHhhh-cc
Q psy7773 619 PSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMK--NHHCKLTQTLNTFY-NS 695 (1281)
Q Consensus 619 p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~k--n~~s~~~~~l~~~~-~~ 695 (1281)
++..+...+|..... ....+||+|-..|.+... .||+|||||.+-+- ++. .+..+++... ..
T Consensus 169 ~~~~I~~Lyg~S~~~---------fr~plvVaTtHQLlrFk~-----aFD~liIDEVDAFP~~~d~-~L~~Av~~ark~~ 233 (441)
T COG4098 169 SNCDIDLLYGDSDSY---------FRAPLVVATTHQLLRFKQ-----AFDLLIIDEVDAFPFSDDQ-SLQYAVKKARKKE 233 (441)
T ss_pred ccCCeeeEecCCchh---------ccccEEEEehHHHHHHHh-----hccEEEEeccccccccCCH-HHHHHHHHhhccc
Confidence 888888888764432 123456655555544433 47999999999874 333 3334443322 34
Q ss_pred CcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHH
Q psy7773 696 SHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKE 775 (1281)
Q Consensus 696 ~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~ 775 (1281)
...+.|||||-..=..++. . ++...+ .+-.|.|.
T Consensus 234 g~~IylTATp~k~l~r~~~-------~--------------------g~~~~~------klp~RfH~------------- 267 (441)
T COG4098 234 GATIYLTATPTKKLERKIL-------K--------------------GNLRIL------KLPARFHG------------- 267 (441)
T ss_pred CceEEEecCChHHHHHHhh-------h--------------------CCeeEe------ecchhhcC-------------
Confidence 5679999999421100000 0 000000 00001110
Q ss_pred HhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhh
Q psy7773 776 VESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHI 855 (1281)
Q Consensus 776 v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~ 855 (1281)
+.||- -..+|+... .+.++
T Consensus 268 --~pLpv--Pkf~w~~~~----------------------------------~k~l~----------------------- 286 (441)
T COG4098 268 --KPLPV--PKFVWIGNW----------------------------------NKKLQ----------------------- 286 (441)
T ss_pred --CCCCC--CceEEeccH----------------------------------HHHhh-----------------------
Confidence 01221 112222111 00000
Q ss_pred cCCCccccCCccccccchHH-HHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHC-CC-cEEEEeCCCChHHHHHHHH
Q psy7773 856 GQNNTVVSGPDIYRTSGKFE-LLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR-DF-SYLRLDGTTKSEDRGELLR 932 (1281)
Q Consensus 856 ~~~~~~~~~~~~~~~s~K~~-~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~-g~-~~~~l~G~~~~~~R~~~i~ 932 (1281)
-.|+. .|..+|.+...+|.-+|||.....++..+...|... +. ....++... ..|.+.+.
T Consensus 287 ---------------r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~ 349 (441)
T COG4098 287 ---------------RNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVE 349 (441)
T ss_pred ---------------hccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHH
Confidence 01222 466778888888999999999999999999998433 22 223444433 38999999
Q ss_pred hhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCC--CChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHH
Q psy7773 933 KFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSD--WNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVE 1003 (1281)
Q Consensus 933 ~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~--wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiE 1003 (1281)
.|++|... +|++|....+|+.++..|+.|+=.-. ++-...+|--||++|-=..-.-.|+.|-..-|-.
T Consensus 350 ~fR~G~~~---lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~ska 419 (441)
T COG4098 350 AFRDGKIT---LLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKA 419 (441)
T ss_pred HHHcCceE---EEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHH
Confidence 99997655 69999999999999999998885444 8999999999999996544444555555544443
No 120
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.65 E-value=4.8e-16 Score=155.40 Aligned_cols=120 Identities=30% Similarity=0.468 Sum_probs=111.4
Q ss_pred chHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEecccc
Q psy7773 872 GKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAG 951 (1281)
Q Consensus 872 ~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~ag 951 (1281)
.|+..+..++.++...+.++||||.....+..+..+|...+.++..++|+++..+|..+++.|+.+... +|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~---ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIV---VLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCc---EEEEcChh
Confidence 699999999988876788999999999999999999999999999999999999999999999986633 68899999
Q ss_pred ccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEE
Q psy7773 952 GLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 994 (1281)
Q Consensus 952 g~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~ 994 (1281)
++|+|++.+++||+++++||+..++|++||++|.||+..|.+|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998777664
No 121
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=8e-14 Score=172.23 Aligned_cols=406 Identities=13% Similarity=0.119 Sum_probs=228.1
Q ss_pred ccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH----HHHHHHHHHH
Q psy7773 542 VNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL----SNWVLEFEKW 617 (1281)
Q Consensus 542 ~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l----~~W~~E~~~~ 617 (1281)
++-.+++-|+.|.--| +.|-|.-..||.|||++++..+...... ...++||+|+.-| .+|...+.+|
T Consensus 79 lg~~~ydvQliGg~~L------h~G~Iaem~TGeGKTL~a~Lpa~~~al~---G~~V~VvTpn~yLA~qd~e~m~~l~~~ 149 (896)
T PRK13104 79 LGLRHFDVQLIGGMVL------HEGNIAEMRTGEGKTLVATLPAYLNAIS---GRGVHIVTVNDYLAKRDSQWMKPIYEF 149 (896)
T ss_pred cCCCcchHHHhhhhhh------ccCccccccCCCCchHHHHHHHHHHHhc---CCCEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 4556778888887544 3366888999999999876555433222 2368999998877 4577777776
Q ss_pred CCCCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHH----hhccccccc-----CceeEEEEeCCccccccchHHHHH
Q psy7773 618 APSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFI----IKDKSVLSK-----IQWKCMIIDEGHRMKNHHCKLTQT 688 (1281)
Q Consensus 618 ~p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l----~~~~~~l~~-----~~w~~vIvDEaHr~kn~~s~~~~~ 688 (1281)
. ++.+.++.|......... .-..+|+++|+..| .++.-.+.. -.+.++||||||+|.-..
T Consensus 150 l-GLtv~~i~gg~~~~~r~~----~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDe------ 218 (896)
T PRK13104 150 L-GLTVGVIYPDMSHKEKQE----AYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDE------ 218 (896)
T ss_pred c-CceEEEEeCCCCHHHHHH----HhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhc------
Confidence 6 466666665533222111 12579999999987 333312211 378899999999874322
Q ss_pred HHhhhccCcEEEeecCCCCCChhHHHHHHh----hhcCCCC-CChhHHHHHhcccccCCcccccCCHH------------
Q psy7773 689 LNTFYNSSHRVLLTGTPLQNKLPELWALLN----FLLPSIF-KSCSTFEQWFNAPFATTGEKVELNEE------------ 751 (1281)
Q Consensus 689 l~~~~~~~~rllLTgTPl~n~~~el~~ll~----fl~p~~~-~~~~~f~~~f~~~~~~~~~~~~~~~~------------ 751 (1281)
++.-|++||.+-.. .++|..++ -|.+... .....| .. ......+.+++.
T Consensus 219 ------ArtPLIISg~~~~~--~~~y~~~~~~v~~l~~~~~~~~~~dy----~i--dek~~~v~Lte~G~~~~e~~~~~~ 284 (896)
T PRK13104 219 ------ARTPLIISGAAEDS--SELYIKINSLIPQLKKQEEEGDEGDY----TI--DEKQKQAHLTDAGHLHIEELLTKA 284 (896)
T ss_pred ------cCCceeeeCCCccc--hHHHHHHHHHHHHHHhccccCCCCCE----EE--EcCCCceEEchHHHHHHHHHHHhC
Confidence 34457788865322 34444443 2322210 000000 00 000000111111
Q ss_pred ------------HHHHHHHHHHHhhhHHH-HHHhHHHHhhcCCCceEEEEEcCCC-------HHHHHHHHHHHhcccccc
Q psy7773 752 ------------ETILIIRRLHKVLRPFL-LRRLKKEVESQLPEKVEYIIKCDMS-------GLQKLLYQHLHNRGILLT 811 (1281)
Q Consensus 752 ------------~~~~~~~~L~~~l~~~~-lRR~k~~v~~~lP~k~~~~v~~~ls-------~~q~~lY~~l~~~~~~~~ 811 (1281)
......+.+...|+... +.|-+..| +-+....+|. ..| .++.-+.+.+..+.-...
T Consensus 285 ~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYi---V~dg~V~iVD-e~TGR~m~grr~s~GLHQaiEaKE~v~i 360 (896)
T PRK13104 285 KLLDPGESLYHASNIMLMHHVNAALKAHAMFHRDIDYI---VKDNQVVIVD-EHTGRTMPGRRWSEGLHQAVEAKEGVPI 360 (896)
T ss_pred CccCCcccccCchhhhHHHHHHHHHHHHHHhcCCCceE---EECCEEEEEE-CCCCCcCCCCCcChHHHHHHHHHcCCCC
Confidence 11112222333333221 11111111 1111111221 111 223333343332211111
Q ss_pred cCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhcCCCc---------cccCCcc--ccccchHHHHHHH
Q psy7773 812 DGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNNT---------VVSGPDI--YRTSGKFELLDRI 880 (1281)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~---------~~~~~~~--~~~s~K~~~L~~l 880 (1281)
..... . ...-.+.|.+....+++--.-........+...++.... ....++. .....|+.++...
T Consensus 361 ~~e~~-t---~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~ 436 (896)
T PRK13104 361 QNENQ-T---LASITFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIED 436 (896)
T ss_pred CCCce-e---eeeehHHHHHHhcchhccCCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHH
Confidence 10000 0 001112222222222221111111111222221111100 0111222 2235799999999
Q ss_pred hhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCccc-
Q psy7773 881 LPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQA- 959 (1281)
Q Consensus 881 L~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~- 959 (1281)
+..+...|..|||||.+....+.|..+|...|+++..|+|.....+|..+.+.|..+ . ++|+|..+|+|+|+.=
T Consensus 437 i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~---VtIATNmAGRGtDI~Lg 511 (896)
T PRK13104 437 VRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--A---VTIATNMAGRGTDIVLG 511 (896)
T ss_pred HHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--c---EEEeccCccCCcceecC
Confidence 999999999999999999999999999999999999999999999999999999985 2 6999999999999762
Q ss_pred -------------------------------------CCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEE
Q psy7773 960 -------------------------------------ADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 994 (1281)
Q Consensus 960 -------------------------------------ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~ 994 (1281)
.=+||.-..+-|-..+.|..||++|.|..-....|
T Consensus 512 gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~ 583 (896)
T PRK13104 512 GSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFY 583 (896)
T ss_pred CchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEE
Confidence 23789999999999999999999999998765555
No 122
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.64 E-value=4.5e-15 Score=168.37 Aligned_cols=314 Identities=19% Similarity=0.206 Sum_probs=211.8
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHH-HHHHHHHHHhcCCCCCEEEEeCCccHHH-HHHHHHHHCCC
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQT-IALLTYLMEKKKNLGPYLVIVPLSTLSN-WVLEFEKWAPS 620 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~a-i~ll~~l~~~~~~~~~~LIV~P~s~l~~-W~~E~~~~~p~ 620 (1281)
..+|.|-|.-+|..-+- .+.|-++...|++|||+++ ++-+..++ ...+.+|.+||...|.| =..+|..-+..
T Consensus 214 ~~eLlPVQ~laVe~GLL---eG~nllVVSaTasGKTLIgElAGi~~~l---~~g~KmlfLvPLVALANQKy~dF~~rYs~ 287 (830)
T COG1202 214 IEELLPVQVLAVEAGLL---EGENLLVVSATASGKTLIGELAGIPRLL---SGGKKMLFLVPLVALANQKYEDFKERYSK 287 (830)
T ss_pred cceecchhhhhhhhccc---cCCceEEEeccCCCcchHHHhhCcHHHH---hCCCeEEEEehhHHhhcchHHHHHHHhhc
Confidence 45899999999875443 5677788999999999985 34455554 33469999999888755 45567665533
Q ss_pred --CcEEEEeCCHHHHHHHH--hhhccCCccEEEechHHHhh---cccccccCceeEEEEeCCccccccc-----hHHHHH
Q psy7773 621 --ANVVAYKGSPLARRALQ--GRMKNSKFNVLLTTYEFIIK---DKSVLSKIQWKCMIIDEGHRMKNHH-----CKLTQT 688 (1281)
Q Consensus 621 --~~~~~~~g~~~~r~~~~--~~~~~~~~~vvItTye~l~~---~~~~l~~~~w~~vIvDEaHr~kn~~-----s~~~~~ 688 (1281)
+.+.+-.|....+..-. ......+.||+|-||+-+-. ....+. +...|||||.|.+.... .-+...
T Consensus 288 LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lg--diGtVVIDEiHtL~deERG~RLdGLI~R 365 (830)
T COG1202 288 LGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLG--DIGTVVIDEIHTLEDEERGPRLDGLIGR 365 (830)
T ss_pred ccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCccc--ccceEEeeeeeeccchhcccchhhHHHH
Confidence 44445556543332211 11234678999999986532 222222 56789999999997522 234555
Q ss_pred HHhhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHH
Q psy7773 689 LNTFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFL 768 (1281)
Q Consensus 689 l~~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 768 (1281)
++.+++....+.|||| -.|+.|+...|..-..- .
T Consensus 366 Lr~l~~~AQ~i~LSAT--VgNp~elA~~l~a~lV~------------------------y-------------------- 399 (830)
T COG1202 366 LRYLFPGAQFIYLSAT--VGNPEELAKKLGAKLVL------------------------Y-------------------- 399 (830)
T ss_pred HHHhCCCCeEEEEEee--cCChHHHHHHhCCeeEe------------------------e--------------------
Confidence 6667788899999999 45667766554321000 0
Q ss_pred HHHhHHHHhhcCCC-ceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhh
Q psy7773 769 LRRLKKEVESQLPE-KVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNI 847 (1281)
Q Consensus 769 lRR~k~~v~~~lP~-k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~ 847 (1281)
..-|- ...+++.|.-.
T Consensus 400 ---------~~RPVplErHlvf~~~e------------------------------------------------------ 416 (830)
T COG1202 400 ---------DERPVPLERHLVFARNE------------------------------------------------------ 416 (830)
T ss_pred ---------cCCCCChhHeeeeecCc------------------------------------------------------
Confidence 00111 11122222111
Q ss_pred HHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhh------hcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCC
Q psy7773 848 EEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFK------ETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGT 921 (1281)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~------~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~ 921 (1281)
+.|..++.++.+.-. .-...+|||+.++.-...|.++|..+|++..-+|++
T Consensus 417 -----------------------~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaG 473 (830)
T COG1202 417 -----------------------SEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAG 473 (830)
T ss_pred -----------------------hHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCC
Confidence 112222222222111 112359999999999999999999999999999999
Q ss_pred CChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEE----eCCCC-ChhhhhhHhHhHHhhCCCCceEEEEE
Q psy7773 922 TKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVII----FDSDW-NPHQDLQAQDRAHRIGQKNEVRVLRL 996 (1281)
Q Consensus 922 ~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~----~D~~w-np~~~~Qa~gR~~RiGQ~k~V~V~rl 996 (1281)
++..+|..+-..|.+.+-. .+++|.|.|.|+|+++ +.||+ +...| ||..+.|..|||+|.|=...-.||-+
T Consensus 474 L~y~eRk~vE~~F~~q~l~---~VVTTAAL~AGVDFPA-SQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyll 549 (830)
T COG1202 474 LPYKERKSVERAFAAQELA---AVVTTAALAAGVDFPA-SQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLL 549 (830)
T ss_pred CcHHHHHHHHHHHhcCCcc---eEeehhhhhcCCCCch-HHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEE
Confidence 9999999999999987665 4899999999999985 44554 44455 99999999999999998777788888
Q ss_pred EeCC
Q psy7773 997 ITVN 1000 (1281)
Q Consensus 997 i~~~ 1000 (1281)
+-.|
T Consensus 550 vepg 553 (830)
T COG1202 550 VEPG 553 (830)
T ss_pred ecCC
Confidence 8654
No 123
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.64 E-value=9.3e-16 Score=163.11 Aligned_cols=153 Identities=25% Similarity=0.376 Sum_probs=109.9
Q ss_pred cccHHHHHHHHHHHHhhcCC---CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHCCC
Q psy7773 545 KLKEYQIKGLEWMVSLYNNN---LNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWAPS 620 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~---~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~p~ 620 (1281)
+|+|||.+++.-+...+... .+++|..+||+|||++++.++..+.. ++|||||. +++.||..+|..+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 69999999999998877654 78899999999999999998888863 99999998 6669999999888765
Q ss_pred CcEEEEeCCH---H--------HHHHHHhhhccCCccEEEechHHHhhcccc-------------cccCceeEEEEeCCc
Q psy7773 621 ANVVAYKGSP---L--------ARRALQGRMKNSKFNVLLTTYEFIIKDKSV-------------LSKIQWKCMIIDEGH 676 (1281)
Q Consensus 621 ~~~~~~~g~~---~--------~r~~~~~~~~~~~~~vvItTye~l~~~~~~-------------l~~~~w~~vIvDEaH 676 (1281)
.......... . ..............+++++|+..+...... +....+++||+||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH 156 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAH 156 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGG
T ss_pred hhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhh
Confidence 5443222110 0 000011122356788999999999765321 223378999999999
Q ss_pred cccccchHHHHHHHhhhccCcEEEeecCCC
Q psy7773 677 RMKNHHCKLTQTLNTFYNSSHRVLLTGTPL 706 (1281)
Q Consensus 677 r~kn~~s~~~~~l~~~~~~~~rllLTgTPl 706 (1281)
++.+... ++.+.. +...++|+|||||.
T Consensus 157 ~~~~~~~--~~~i~~-~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 157 HYPSDSS--YREIIE-FKAAFILGLTATPF 183 (184)
T ss_dssp CTHHHHH--HHHHHH-SSCCEEEEEESS-S
T ss_pred hcCCHHH--HHHHHc-CCCCeEEEEEeCcc
Confidence 9987664 444444 47889999999995
No 124
>KOG0337|consensus
Probab=99.63 E-value=2.8e-15 Score=164.74 Aligned_cols=315 Identities=16% Similarity=0.194 Sum_probs=214.0
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC-CCCCEEEEeCCccH-HH---HHHHHHHHCC
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKK-NLGPYLVIVPLSTL-SN---WVLEFEKWAP 619 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~-~~~~~LIV~P~s~l-~~---W~~E~~~~~p 619 (1281)
++.|.|...+.-++. +...+-..-||+|||..-+.-+..-+..+. ..-+.||+.|+.-| .| ...++.++.
T Consensus 43 ~ptpiqRKTipliLe----~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt- 117 (529)
T KOG0337|consen 43 TPTPIQRKTIPLILE----GRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGT- 117 (529)
T ss_pred CCCchhcccccceee----ccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhcccc-
Confidence 567788887766554 333344556999999886654444333333 22389999998777 33 334444444
Q ss_pred CCcEE-EEeCCHHHHHHHHhhhccCCccEEEechHHHhhccc--ccccCceeEEEEeCCcccc--ccchHHHHHHHhhhc
Q psy7773 620 SANVV-AYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKS--VLSKIQWKCMIIDEGHRMK--NHHCKLTQTLNTFYN 694 (1281)
Q Consensus 620 ~~~~~-~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~--~l~~~~w~~vIvDEaHr~k--n~~s~~~~~l~~~~~ 694 (1281)
.++.. .|+|.....+.. ....+.||||+|+..+..... .|.-....|||+|||.++- ++..++.+.+.++..
T Consensus 118 ~lr~s~~~ggD~~eeqf~---~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~ 194 (529)
T KOG0337|consen 118 KLRQSLLVGGDSIEEQFI---LLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPE 194 (529)
T ss_pred chhhhhhcccchHHHHHH---HhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCC
Confidence 34444 555554444322 224578999999998754322 1333457899999999996 456778888888866
Q ss_pred cCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHH
Q psy7773 695 SSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKK 774 (1281)
Q Consensus 695 ~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~ 774 (1281)
+...+++|||- .+.+ +.|...+.
T Consensus 195 ~~QTllfSatl-p~~l------v~fakaGl-------------------------------------------------- 217 (529)
T KOG0337|consen 195 SRQTLLFSATL-PRDL------VDFAKAGL-------------------------------------------------- 217 (529)
T ss_pred cceEEEEeccC-chhh------HHHHHccC--------------------------------------------------
Confidence 77899999993 1111 11111100
Q ss_pred HHhhcCCCceEE-EEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHh
Q psy7773 775 EVESQLPEKVEY-IIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQ 853 (1281)
Q Consensus 775 ~v~~~lP~k~~~-~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~ 853 (1281)
.||.... -|.-..++ ..+++.+
T Consensus 218 -----~~p~lVRldvetkise------------------------------------~lk~~f~---------------- 240 (529)
T KOG0337|consen 218 -----VPPVLVRLDVETKISE------------------------------------LLKVRFF---------------- 240 (529)
T ss_pred -----CCCceEEeehhhhcch------------------------------------hhhhhee----------------
Confidence 1111110 00000000 0000100
Q ss_pred hhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHh
Q psy7773 854 HIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRK 933 (1281)
Q Consensus 854 ~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~ 933 (1281)
.++...|..+|..++..... .++.+||+.....++++...|...|+.+..+.|++.+.-|..-+.+
T Consensus 241 -------------~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~ 306 (529)
T KOG0337|consen 241 -------------RVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRD 306 (529)
T ss_pred -------------eeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhcccc
Confidence 11234577777777766443 4579999999999999999999999999999999999999999999
Q ss_pred hcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCC
Q psy7773 934 FNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVN 1000 (1281)
Q Consensus 934 Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~ 1000 (1281)
|+.+... +|++|++|++|++++-.++||+||.|-.+..+.+|+||+.|.|.+- ..|-||+..
T Consensus 307 F~~~k~~---~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg--~aYs~V~~~ 368 (529)
T KOG0337|consen 307 FRGRKTS---ILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTG--RAYSLVAST 368 (529)
T ss_pred ccCCccc---eEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccc--eEEEEEecc
Confidence 9986665 6999999999999999999999999999999999999999999764 566777654
No 125
>COG4889 Predicted helicase [General function prediction only]
Probab=99.63 E-value=3e-15 Score=175.84 Aligned_cols=159 Identities=21% Similarity=0.251 Sum_probs=103.2
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHC-CC
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWA-PS 620 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~-p~ 620 (1281)
..+|||||..++.-..+.+..+-.|=|-..+|+|||.+++-+...+.. .++|.+||. ++|+|-.+|...-. -.
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~-----~~iL~LvPSIsLLsQTlrew~~~~~l~ 233 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA-----ARILFLVPSISLLSQTLREWTAQKELD 233 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh-----hheEeecchHHHHHHHHHHHhhccCcc
Confidence 348999999999999998888888877788999999999988877753 589999996 67777555543221 01
Q ss_pred Cc-EEEEeCCH-------------------HHHHHH---HhhhccCCccEEEechHHHhhc--ccccccCceeEEEEeCC
Q psy7773 621 AN-VVAYKGSP-------------------LARRAL---QGRMKNSKFNVLLTTYEFIIKD--KSVLSKIQWKCMIIDEG 675 (1281)
Q Consensus 621 ~~-~~~~~g~~-------------------~~r~~~---~~~~~~~~~~vvItTye~l~~~--~~~l~~~~w~~vIvDEa 675 (1281)
++ +.+....+ ..+..+ ....+..+.-||++||+.+-.- .....--.||+||+|||
T Consensus 234 ~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEA 313 (1518)
T COG4889 234 FRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEA 313 (1518)
T ss_pred ceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecch
Confidence 11 12221111 111111 1222456677999999988543 22333447999999999
Q ss_pred cccccc------chHHHHHH-HhhhccCcEEEeecCCC
Q psy7773 676 HRMKNH------HCKLTQTL-NTFYNSSHRVLLTGTPL 706 (1281)
Q Consensus 676 Hr~kn~------~s~~~~~l-~~~~~~~~rllLTgTPl 706 (1281)
||.-+. .+.+++.- ....++.+||.|||||-
T Consensus 314 HRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPk 351 (1518)
T COG4889 314 HRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPK 351 (1518)
T ss_pred hccccceecccCcccceeecCcchhHHHHhhhcccCch
Confidence 997532 12222111 11125678899999994
No 126
>PRK09694 helicase Cas3; Provisional
Probab=99.62 E-value=7e-14 Score=176.83 Aligned_cols=100 Identities=17% Similarity=0.147 Sum_probs=83.3
Q ss_pred hcCCeEEEEechHHHHHHHHHHHHHCC---CcEEEEeCCCChHHH----HHHHHhh-cCCCCCeEEEEEeccccccccCc
Q psy7773 886 ETKHRVLMFCQMTQLMTILEDYFIWRD---FSYLRLDGTTKSEDR----GELLRKF-NEPESKYFIFLLSTRAGGLGLNL 957 (1281)
Q Consensus 886 ~~~~kvLIFsq~~~~ld~L~~~L~~~g---~~~~~l~G~~~~~~R----~~~i~~F-n~~~~~~~v~LlsT~agg~GlNL 957 (1281)
..+.+|||||+.+..+..+...|...+ +++..+||.++..+| .++++.| +++..+...+||||.+...|||+
T Consensus 558 ~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI 637 (878)
T PRK09694 558 NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL 637 (878)
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec
Confidence 467899999999999999999998765 679999999999999 5678889 44332212359999999999999
Q ss_pred ccCCEEEEeCCCCChhhhhhHhHhHHhhCCC
Q psy7773 958 QAADTVIIFDSDWNPHQDLQAQDRAHRIGQK 988 (1281)
Q Consensus 958 ~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~ 988 (1281)
++|.||....| ...++||+||+||.|.+
T Consensus 638 -d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 638 -DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred -CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 68998887666 67899999999999875
No 127
>PRK13766 Hef nuclease; Provisional
Probab=99.60 E-value=1.1e-14 Score=189.29 Aligned_cols=140 Identities=24% Similarity=0.302 Sum_probs=125.8
Q ss_pred ccCcHHHHHHHHHHHhh--hCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCC--------CCHHHHHHHHHHhcCCC
Q psy7773 166 RTSGKFELLDRILPKFK--ETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGT--------TKSEDRGELLRKFNEPE 235 (1281)
Q Consensus 166 ~~s~K~~~L~~ll~~~~--~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~--------~~~~~R~~~i~~F~~~~ 235 (1281)
..++|+..|.++|.... ..+.|+||||++..+.+.|..+|...|+.+..++|. ++..+|..++.+|+++.
T Consensus 344 ~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~ 423 (773)
T PRK13766 344 IEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGE 423 (773)
T ss_pred cCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCC
Confidence 45799999999998876 577899999999999999999999999999999987 88889999999999865
Q ss_pred CCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhcc
Q psy7773 236 SKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKL 311 (1281)
Q Consensus 236 ~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~ 311 (1281)
. . +|++|.++++|+|++.+++||+||++|||..+.||.||++|.|+ +.||.|++.+|+||.+|.....|.
T Consensus 424 ~--~-vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke 493 (773)
T PRK13766 424 F--N-VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKE 493 (773)
T ss_pred C--C-EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHH
Confidence 4 3 47788999999999999999999999999999999988888776 778999999999999988776664
No 128
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.60 E-value=2.4e-13 Score=169.71 Aligned_cols=310 Identities=18% Similarity=0.218 Sum_probs=212.9
Q ss_pred CcccHHHHHHHHHHHHhhcCCC--CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCCC
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNL--NGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAPS 620 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~--~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p~ 620 (1281)
..-.|-|+.+++-...-+.++. .-+||.++|.|||=+|+-.+-... ...+-+.|+||+.+| .|-...|..-|.+
T Consensus 593 yeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV---~~GKQVAvLVPTTlLA~QHy~tFkeRF~~ 669 (1139)
T COG1197 593 YEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV---MDGKQVAVLVPTTLLAQQHYETFKERFAG 669 (1139)
T ss_pred CcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHh---cCCCeEEEEcccHHhHHHHHHHHHHHhcC
Confidence 3677889999998887665554 359999999999999874433222 333689999999998 5556667666656
Q ss_pred CcEEEEe----CCHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccC
Q psy7773 621 ANVVAYK----GSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSS 696 (1281)
Q Consensus 621 ~~~~~~~----g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~ 696 (1281)
+.|-+-. -+....+.+......+..||||-|+..|.++..+- +..+|||||=||+.=.+ -..++.+...-
T Consensus 670 fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~Fk---dLGLlIIDEEqRFGVk~---KEkLK~Lr~~V 743 (1139)
T COG1197 670 FPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFK---DLGLLIIDEEQRFGVKH---KEKLKELRANV 743 (1139)
T ss_pred CCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEe---cCCeEEEechhhcCccH---HHHHHHHhccC
Confidence 6554322 33444455566778899999999999997765543 45799999999997554 34455555678
Q ss_pred cEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHH
Q psy7773 697 HRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEV 776 (1281)
Q Consensus 697 ~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v 776 (1281)
..|-|||||+..++.= +|.. ++.| +.+
T Consensus 744 DvLTLSATPIPRTL~M--sm~G--------------------------------------iRdl-------------SvI 770 (1139)
T COG1197 744 DVLTLSATPIPRTLNM--SLSG--------------------------------------IRDL-------------SVI 770 (1139)
T ss_pred cEEEeeCCCCcchHHH--HHhc--------------------------------------chhh-------------hhc
Confidence 8999999999876521 1100 0000 000
Q ss_pred hhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhc
Q psy7773 777 ESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIG 856 (1281)
Q Consensus 777 ~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 856 (1281)
.-||....-|..-.++..
T Consensus 771 --~TPP~~R~pV~T~V~~~d------------------------------------------------------------ 788 (1139)
T COG1197 771 --ATPPEDRLPVKTFVSEYD------------------------------------------------------------ 788 (1139)
T ss_pred --cCCCCCCcceEEEEecCC------------------------------------------------------------
Confidence 123322211111100000
Q ss_pred CCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHC--CCcEEEEeCCCChHHHHHHHHhh
Q psy7773 857 QNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR--DFSYLRLDGTTKSEDRGELLRKF 934 (1281)
Q Consensus 857 ~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~l~G~~~~~~R~~~i~~F 934 (1281)
-..+=.-+++++. .|..|-...+.+..+..+...|... ..++...||.|+..+-..++..|
T Consensus 789 ----------------~~~ireAI~REl~-RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F 851 (1139)
T COG1197 789 ----------------DLLIREAILRELL-RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDF 851 (1139)
T ss_pred ----------------hHHHHHHHHHHHh-cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHH
Confidence 0000011233332 3556777778888888888888775 66788999999999999999999
Q ss_pred cCCCCCeEEEEEeccccccccCcccCCEEEEeCCC-CChhhhhhHhHhHHhhCCCCceEEEEEEeC
Q psy7773 935 NEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSD-WNPHQDLQAQDRAHRIGQKNEVRVLRLITV 999 (1281)
Q Consensus 935 n~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~-wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~ 999 (1281)
.+++.+ +|+||.....|||++.|||+|+-+.+ +--++.-|-.||++|-.+ .-+.|.|+..
T Consensus 852 ~~g~~d---VLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~--~AYAYfl~p~ 912 (1139)
T COG1197 852 YNGEYD---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNK--QAYAYFLYPP 912 (1139)
T ss_pred HcCCCC---EEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccc--eEEEEEeecC
Confidence 987766 59999999999999999999999886 688999999999999544 3566666653
No 129
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.59 E-value=6.2e-15 Score=147.37 Aligned_cols=120 Identities=30% Similarity=0.482 Sum_probs=110.3
Q ss_pred cHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecccc
Q psy7773 169 GKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAG 248 (1281)
Q Consensus 169 ~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~ 248 (1281)
+|+..+..++......+.++||||.+...++.+..+|...++++..++|+++..+|..+++.|+++.. .+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~---~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEI---VVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCC---cEEEEcChh
Confidence 69999999998876678899999999999999999999999999999999999999999999998653 467788999
Q ss_pred ccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEE
Q psy7773 249 GLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 291 (1281)
Q Consensus 249 ~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~ 291 (1281)
++|+|++.+++||+++++|++..+.|++||++|.||...|.+|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998777664
No 130
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=3.7e-13 Score=165.86 Aligned_cols=119 Identities=14% Similarity=0.146 Sum_probs=104.0
Q ss_pred ccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEecc
Q psy7773 870 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 949 (1281)
Q Consensus 870 ~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~ 949 (1281)
...|+..|...+..+...+..|||||.+....+.|...|...|+++..++|.....++.-+...+..+ . ++|+|.
T Consensus 422 ~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g--~---VtIATn 496 (796)
T PRK12906 422 LDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRG--A---VTIATN 496 (796)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCc--e---EEEEec
Confidence 34689999999988888899999999999999999999999999999999998866666666666552 2 699999
Q ss_pred ccccccCcc---cCC-----EEEEeCCCCChhhhhhHhHhHHhhCCCCceEE
Q psy7773 950 AGGLGLNLQ---AAD-----TVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRV 993 (1281)
Q Consensus 950 agg~GlNL~---~ad-----~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V 993 (1281)
.+|+|+|+. .+. +||.++.|-|...|.|+.||++|.|..-....
T Consensus 497 mAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~ 548 (796)
T PRK12906 497 MAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 548 (796)
T ss_pred cccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEE
Confidence 999999995 566 99999999999999999999999999876533
No 131
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.57 E-value=1.3e-12 Score=161.63 Aligned_cols=405 Identities=14% Similarity=0.129 Sum_probs=224.6
Q ss_pred ccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH----HHHHHHHHHH
Q psy7773 542 VNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL----SNWVLEFEKW 617 (1281)
Q Consensus 542 ~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l----~~W~~E~~~~ 617 (1281)
++-.+++-|+-|.--| +.|.|.-..||.|||++++..+.... -.+ ..+-||+|+..| .+|...+-.+
T Consensus 78 lg~~~~dvQlig~l~L------~~G~Iaem~TGeGKTLva~lpa~l~a-L~G--~~V~IvTpn~yLA~rd~e~~~~l~~~ 148 (830)
T PRK12904 78 LGMRHFDVQLIGGMVL------HEGKIAEMKTGEGKTLVATLPAYLNA-LTG--KGVHVVTVNDYLAKRDAEWMGPLYEF 148 (830)
T ss_pred hCCCCCccHHHhhHHh------cCCchhhhhcCCCcHHHHHHHHHHHH-HcC--CCEEEEecCHHHHHHHHHHHHHHHhh
Confidence 4567888899887543 23568888999999998765543221 112 256699999888 3466666666
Q ss_pred CCCCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhc----c-----cccccCceeEEEEeCCccccccchHHHHH
Q psy7773 618 APSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKD----K-----SVLSKIQWKCMIIDEGHRMKNHHCKLTQT 688 (1281)
Q Consensus 618 ~p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~----~-----~~l~~~~w~~vIvDEaHr~kn~~s~~~~~ 688 (1281)
. ++.+.+..|.......... -..+|++.|+..|.-+ . ..+..-.+.++|||||.+|.=..
T Consensus 149 L-Glsv~~i~~~~~~~er~~~----y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDe------ 217 (830)
T PRK12904 149 L-GLSVGVILSGMSPEERREA----YAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDE------ 217 (830)
T ss_pred c-CCeEEEEcCCCCHHHHHHh----cCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheecc------
Confidence 5 6677666664333221111 2379999999877321 1 11223478899999999875332
Q ss_pred HHhhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCCh------------------hHHHHHhcccccCCcccccCCH
Q psy7773 689 LNTFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSC------------------STFEQWFNAPFATTGEKVELNE 750 (1281)
Q Consensus 689 l~~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~------------------~~f~~~f~~~~~~~~~~~~~~~ 750 (1281)
++.-|++||.+-. ..++|..++-+-+...... ....+.|..+ .+-.
T Consensus 218 ------ArtpLiiSg~~~~--~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~--------~ly~ 281 (830)
T PRK12904 218 ------ARTPLIISGPAED--SSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIE--------NLYD 281 (830)
T ss_pred ------CCCceeeECCCCc--ccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCc--------cccC
Confidence 3334777876432 2345555443322221110 0001111100 0111
Q ss_pred HHHHHHHHHHHHhhhHHH-HHHhHHHHhhcCCCceEEEEE------cCCCHHHHHHHHHHHhcccccccCCccCCCCCCc
Q psy7773 751 EETILIIRRLHKVLRPFL-LRRLKKEVESQLPEKVEYIIK------CDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGG 823 (1281)
Q Consensus 751 ~~~~~~~~~L~~~l~~~~-lRR~k~~v~~~lP~k~~~~v~------~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~ 823 (1281)
.......+.+...|+... +.|-+..+ +.+....+|. .+-..+..-+.+.+..+.-........ ...
T Consensus 282 ~~~~~~~~~i~~AL~A~~l~~~d~dYi---V~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~-t~a--- 354 (830)
T PRK12904 282 PENIALVHHLNQALRAHELFKRDVDYI---VKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQ-TLA--- 354 (830)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCcEE---EECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCce-eee---
Confidence 111122333333333322 22222111 1122222221 011123333344433221111110000 000
Q ss_pred hHHHHHHHHHHHHhcCCccchhhhHHHHHhhhcCCC-------c--cccCCccc--cccchHHHHHHHhhhhhhcCCeEE
Q psy7773 824 ARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNN-------T--VVSGPDIY--RTSGKFELLDRILPKFKETKHRVL 892 (1281)
Q Consensus 824 ~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~-------~--~~~~~~~~--~~s~K~~~L~~lL~~~~~~~~kvL 892 (1281)
.-++.+.+....+++--.-........+...++... . ....++.+ ....|+.+|...+..+...+..||
T Consensus 355 ~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVL 434 (830)
T PRK12904 355 SITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVL 434 (830)
T ss_pred eeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEE
Confidence 011111111111221110000111111111111110 0 01112222 234699999999988888899999
Q ss_pred EEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccC------------
Q psy7773 893 MFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAA------------ 960 (1281)
Q Consensus 893 IFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~a------------ 960 (1281)
|||.+....+.|...|...|+++..|+|. ..+|...+..|..+... ++|+|..+|+|+|+.-.
T Consensus 435 Ift~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~---VtIATNmAGRGtDI~LgGn~~~~~~~~~~ 509 (830)
T PRK12904 435 VGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGA---VTIATNMAGRGTDIKLGGNPEMLAAALLE 509 (830)
T ss_pred EEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCce---EEEecccccCCcCccCCCchhhhhhhhhh
Confidence 99999999999999999999999999995 67999999999875554 69999999999997643
Q ss_pred --------------------------CEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEE
Q psy7773 961 --------------------------DTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 994 (1281)
Q Consensus 961 --------------------------d~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~ 994 (1281)
=+||.-..+-|-..+.|..||++|.|..-....|
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~ 569 (830)
T PRK12904 510 EETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFY 569 (830)
T ss_pred hhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEE
Confidence 3789999999999999999999999998776555
No 132
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.56 E-value=4.4e-13 Score=166.50 Aligned_cols=134 Identities=20% Similarity=0.170 Sum_probs=113.7
Q ss_pred ccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEecc
Q psy7773 870 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 949 (1281)
Q Consensus 870 ~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~ 949 (1281)
..+++..|...|..+...+.+|||||.....++.|..+|...|+++..+||.++..+|..++..|..+.. . +|++|.
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i--~-VLV~t~ 500 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEF--D-VLVGIN 500 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCc--e-EEEEcC
Confidence 4678888888888888899999999999999999999999999999999999999999999999987553 3 589999
Q ss_pred ccccccCcccCCEEEEeC-----CCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCC--HHHHHHHH
Q psy7773 950 AGGLGLNLQAADTVIIFD-----SDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNS--VEERILAA 1009 (1281)
Q Consensus 950 agg~GlNL~~ad~VI~~D-----~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~t--iEe~I~~~ 1009 (1281)
.+++|++++.+++||++| .+-+...++|++||++|.+ .-.++.|+...| +...|.+.
T Consensus 501 ~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~---~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV---NGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred hhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC---CCEEEEEEcCCCHHHHHHHHHH
Confidence 999999999999999999 5678999999999999974 234555555443 44444443
No 133
>KOG0351|consensus
Probab=99.55 E-value=6.7e-14 Score=176.19 Aligned_cols=313 Identities=17% Similarity=0.192 Sum_probs=215.7
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHCCCC
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWAPSA 621 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~p~~ 621 (1281)
....||-|.++|.-.+ .|..+++-.+||.||.+... +..--..|-+|||.|+ |++.-...-+... ++
T Consensus 262 ~~~FR~~Q~eaI~~~l----~Gkd~fvlmpTG~GKSLCYQ------lPA~l~~gitvVISPL~SLm~DQv~~L~~~--~I 329 (941)
T KOG0351|consen 262 HKGFRPNQLEAINATL----SGKDCFVLMPTGGGKSLCYQ------LPALLLGGVTVVISPLISLMQDQVTHLSKK--GI 329 (941)
T ss_pred cccCChhHHHHHHHHH----cCCceEEEeecCCceeeEee------ccccccCCceEEeccHHHHHHHHHHhhhhc--Cc
Confidence 4579999999998544 47778899999999997642 1111223578999996 6665555555332 34
Q ss_pred cEEEEeCCHH--HHHHHHhhhccC--CccEEEechHHHhhccccccc----Cc---eeEEEEeCCccccccc------hH
Q psy7773 622 NVVAYKGSPL--ARRALQGRMKNS--KFNVLLTTYEFIIKDKSVLSK----IQ---WKCMIIDEGHRMKNHH------CK 684 (1281)
Q Consensus 622 ~~~~~~g~~~--~r~~~~~~~~~~--~~~vvItTye~l~~~~~~l~~----~~---w~~vIvDEaHr~kn~~------s~ 684 (1281)
....+.+... .+..+...+..+ .++++-.|++.+......+.. .. ..++||||||...... .+
T Consensus 330 ~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk 409 (941)
T KOG0351|consen 330 PACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYK 409 (941)
T ss_pred ceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHH
Confidence 4444444433 333444444455 789999999999876443321 12 6899999999987432 12
Q ss_pred HHHHHHhhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhh
Q psy7773 685 LTQTLNTFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVL 764 (1281)
Q Consensus 685 ~~~~l~~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l 764 (1281)
.-..++.-+...-.|.||||--..--.++...|++-.|.+|.+ -|++
T Consensus 410 ~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~------sfnR--------------------------- 456 (941)
T KOG0351|consen 410 RLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKS------SFNR--------------------------- 456 (941)
T ss_pred HHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecc------cCCC---------------------------
Confidence 2223333335556789999987777777877777776664422 1111
Q ss_pred hHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccch
Q psy7773 765 RPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMF 844 (1281)
Q Consensus 765 ~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~ 844 (1281)
+...+-|..... ...+...+...
T Consensus 457 -----------------~NL~yeV~~k~~------------------------------~~~~~~~~~~~---------- 479 (941)
T KOG0351|consen 457 -----------------PNLKYEVSPKTD------------------------------KDALLDILEES---------- 479 (941)
T ss_pred -----------------CCceEEEEeccC------------------------------ccchHHHHHHh----------
Confidence 111111111110 00011111111
Q ss_pred hhhHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCCh
Q psy7773 845 QNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKS 924 (1281)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~ 924 (1281)
+ ....+.-.||||....+.+.+...|...|++...+|.+++.
T Consensus 480 -------------------------------------~-~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~ 521 (941)
T KOG0351|consen 480 -------------------------------------K-LRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPP 521 (941)
T ss_pred -------------------------------------h-hcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCH
Confidence 1 12234558999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEe
Q psy7773 925 EDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLIT 998 (1281)
Q Consensus 925 ~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~ 998 (1281)
.+|..+-..|..+. ++| +++|=|.|.|||-++...||+|..|-+..-|.|..|||+|-|+...+..|+=..
T Consensus 522 ~~R~~Vq~~w~~~~--~~V-ivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351|consen 522 KERETVQKAWMSDK--IRV-IVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred HHHHHHHHHHhcCC--CeE-EEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchh
Confidence 99999999999855 554 899999999999999999999999999999999999999999998877665433
No 134
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.54 E-value=7.4e-15 Score=132.38 Aligned_cols=78 Identities=32% Similarity=0.592 Sum_probs=74.0
Q ss_pred HHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhh
Q psy7773 906 DYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRI 985 (1281)
Q Consensus 906 ~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~Ri 985 (1281)
.+|...|+++..++|.++..+|..+++.|+.+... +|++|.++++|||++.+++||+|+++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~---vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIR---VLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSS---EEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCce---EEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 36888999999999999999999999999997764 699999999999999999999999999999999999999999
Q ss_pred C
Q psy7773 986 G 986 (1281)
Q Consensus 986 G 986 (1281)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 8
No 135
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.54 E-value=1.8e-12 Score=159.74 Aligned_cols=120 Identities=13% Similarity=0.141 Sum_probs=108.1
Q ss_pred ccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEecc
Q psy7773 870 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 949 (1281)
Q Consensus 870 ~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~ 949 (1281)
...|+.++.+-+..+...|..|||||.+....+.|..+|...|+++..|++..+..+|..+...|+.+. ++|+|.
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~-----VtIATn 505 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA-----VTIATN 505 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc-----EEEecC
Confidence 367999999999999999999999999999999999999999999999999999999999999998743 699999
Q ss_pred ccccccCccc-------------------------------------CCEEEEeCCCCChhhhhhHhHhHHhhCCCCceE
Q psy7773 950 AGGLGLNLQA-------------------------------------ADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVR 992 (1281)
Q Consensus 950 agg~GlNL~~-------------------------------------ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~ 992 (1281)
.+|+|+|+.- .=+||.-..+-|-..+.|..||++|.|..-...
T Consensus 506 mAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~ 585 (908)
T PRK13107 506 MAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSR 585 (908)
T ss_pred CcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCcee
Confidence 9999999762 237999999999999999999999999877654
Q ss_pred EE
Q psy7773 993 VL 994 (1281)
Q Consensus 993 V~ 994 (1281)
.|
T Consensus 586 f~ 587 (908)
T PRK13107 586 FY 587 (908)
T ss_pred EE
Confidence 44
No 136
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.54 E-value=4.3e-13 Score=172.83 Aligned_cols=108 Identities=17% Similarity=0.174 Sum_probs=87.8
Q ss_pred cCCeEEEEechHHHHHHHHHHHHHCCCc---EEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEE
Q psy7773 887 TKHRVLMFCQMTQLMTILEDYFIWRDFS---YLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTV 963 (1281)
Q Consensus 887 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~---~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~V 963 (1281)
....+|||+.....++.+...|...+++ ++-++|+++..+|..+++.+ +... +|+||++++.||++++.++|
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~----g~rk-IIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH----SGRR-IVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc----CCee-EEEeccHHhhccccCcceEE
Confidence 3457999999999999999999988775 56789999999999887653 2344 59999999999999999999
Q ss_pred EEeC---------------CCCCh---hhhhhHhHhHHhhCCCCceEEEEEEeCCCH
Q psy7773 964 IIFD---------------SDWNP---HQDLQAQDRAHRIGQKNEVRVLRLITVNSV 1002 (1281)
Q Consensus 964 I~~D---------------~~wnp---~~~~Qa~gR~~RiGQ~k~V~V~rli~~~ti 1002 (1281)
|.++ ++..| ..+.||.||++|.+ +-.+|+|++....
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte~d~ 413 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSEDDF 413 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCHHHH
Confidence 9985 33333 67999999999984 5678888886543
No 137
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.53 E-value=8.7e-12 Score=156.46 Aligned_cols=124 Identities=21% Similarity=0.203 Sum_probs=109.2
Q ss_pred ccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEecc
Q psy7773 870 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 949 (1281)
Q Consensus 870 ~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~ 949 (1281)
..+++..|...|..+...+.+|||||.....++.|..+|...|+++..+||.++..+|..++..|..+. +. +|++|.
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~--i~-vlV~t~ 504 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE--FD-VLVGIN 504 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCC--ce-EEEEeC
Confidence 457788888888888889999999999999999999999999999999999999999999999998754 33 589999
Q ss_pred ccccccCcccCCEEEEeCC-----CCChhhhhhHhHhHHhhCCCCceEEEEEEeC
Q psy7773 950 AGGLGLNLQAADTVIIFDS-----DWNPHQDLQAQDRAHRIGQKNEVRVLRLITV 999 (1281)
Q Consensus 950 agg~GlNL~~ad~VI~~D~-----~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~ 999 (1281)
.+++|++++.+++||++|. +-++..|+|++||++|- . .-.++.|++.
T Consensus 505 ~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~ 556 (652)
T PRK05298 505 LLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADK 556 (652)
T ss_pred HHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEecC
Confidence 9999999999999999997 46899999999999994 2 3446666664
No 138
>KOG0352|consensus
Probab=99.53 E-value=3.8e-13 Score=147.79 Aligned_cols=322 Identities=17% Similarity=0.193 Sum_probs=202.5
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc-cHHHHHHHHHHHCCCCcEEE
Q psy7773 547 KEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS-TLSNWVLEFEKWAPSANVVA 625 (1281)
Q Consensus 547 ~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s-~l~~W~~E~~~~~p~~~~~~ 625 (1281)
.|-|..++.-++. .+....++.+||.||++..-... |+ ..|.++||.|+- ++....+-+.+.--....+-
T Consensus 22 s~LQE~A~~c~VK---~k~DVyVsMPTGaGKSLCyQLPa--L~----~~gITIV~SPLiALIkDQiDHL~~LKVp~~SLN 92 (641)
T KOG0352|consen 22 SRLQEQAINCIVK---RKCDVYVSMPTGAGKSLCYQLPA--LV----HGGITIVISPLIALIKDQIDHLKRLKVPCESLN 92 (641)
T ss_pred ChHHHHHHHHHHh---ccCcEEEeccCCCchhhhhhchH--HH----hCCeEEEehHHHHHHHHHHHHHHhcCCchhHhc
Confidence 3679999987775 46678999999999997643221 22 124788888863 44444555544321111111
Q ss_pred EeCCHHHHHHHHhhhc--cCCccEEEechHHHhhc-----cc-ccccCceeEEEEeCCcccccc------chHHHHHHHh
Q psy7773 626 YKGSPLARRALQGRMK--NSKFNVLLTTYEFIIKD-----KS-VLSKIQWKCMIIDEGHRMKNH------HCKLTQTLNT 691 (1281)
Q Consensus 626 ~~g~~~~r~~~~~~~~--~~~~~vvItTye~l~~~-----~~-~l~~~~w~~vIvDEaHr~kn~------~s~~~~~l~~ 691 (1281)
-.-+...|..+..... .....++-.|++..... .. ........|+||||||.+... .....-.|+.
T Consensus 93 SKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS 172 (641)
T KOG0352|consen 93 SKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRS 172 (641)
T ss_pred chhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHh
Confidence 1223334444333322 23445677788765443 12 223335789999999998632 2223344555
Q ss_pred hhccCcEEEeecCCCCCChhHHHHHHhhhcCCC-CCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHH
Q psy7773 692 FYNSSHRVLLTGTPLQNKLPELWALLNFLLPSI-FKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLR 770 (1281)
Q Consensus 692 ~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~-~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lR 770 (1281)
.+...--+.||||--..--+|++..|.+-.|-- |.+. .|..
T Consensus 173 ~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP-~FR~------------------------------------- 214 (641)
T KOG0352|consen 173 VCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTP-TFRD------------------------------------- 214 (641)
T ss_pred hCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCc-chhh-------------------------------------
Confidence 445556678999987777778888887765532 2211 1211
Q ss_pred HhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHH
Q psy7773 771 RLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEK 850 (1281)
Q Consensus 771 R~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~ 850 (1281)
..+|+......+. ..+.+...-.+++.-.|--+..
T Consensus 215 --------------------------NLFYD~~~K~~I~---------------D~~~~LaDF~~~~LG~~~~~~~---- 249 (641)
T KOG0352|consen 215 --------------------------NLFYDNHMKSFIT---------------DCLTVLADFSSSNLGKHEKASQ---- 249 (641)
T ss_pred --------------------------hhhHHHHHHHHhh---------------hHhHhHHHHHHHhcCChhhhhc----
Confidence 0112211110000 0000000001111111100000
Q ss_pred HHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHH
Q psy7773 851 YCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGEL 930 (1281)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~ 930 (1281)
.+ +.+ ..=-||||..+...+.|...|...|++..-+|.+.+..+|..+
T Consensus 250 -------------~~----------------K~~---~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeV 297 (641)
T KOG0352|consen 250 -------------NK----------------KTF---TGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEV 297 (641)
T ss_pred -------------CC----------------CCc---CcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHH
Confidence 00 000 0114999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEE
Q psy7773 931 LRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLR 995 (1281)
Q Consensus 931 i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~r 995 (1281)
-+.|.+++.+ +|++|-+.|.|+|-++...||+.|++-|..-|.|--|||+|-|-..=++.|+
T Consensus 298 Qe~WM~~~~P---vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 298 QEKWMNNEIP---VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred HHHHhcCCCC---EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeee
Confidence 9999987776 6899999999999999999999999999999999999999999888788776
No 139
>KOG0353|consensus
Probab=99.52 E-value=2.7e-13 Score=146.21 Aligned_cols=313 Identities=19% Similarity=0.179 Sum_probs=220.5
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHCCCCcE
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWAPSANV 623 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~p~~~~ 623 (1281)
+.||.|+.+++..+. +...+|..++|-||++..-.. .-...|-.|||||. |++......++...-+...
T Consensus 94 kfrplq~~ain~~ma----~ed~~lil~tgggkslcyqlp------al~adg~alvi~plislmedqil~lkqlgi~as~ 163 (695)
T KOG0353|consen 94 KFRPLQLAAINATMA----GEDAFLILPTGGGKSLCYQLP------ALCADGFALVICPLISLMEDQILQLKQLGIDASM 163 (695)
T ss_pred hcChhHHHHhhhhhc----cCceEEEEeCCCccchhhhhh------HHhcCCceEeechhHHHHHHHHHHHHHhCcchhh
Confidence 689999999987664 677899999999999754322 22234789999996 6677777777776655555
Q ss_pred EEEeCCHHHHHHHHhh--hccCCccEEEechHHHhhccccccc-------CceeEEEEeCCccccc------cchHHHHH
Q psy7773 624 VAYKGSPLARRALQGR--MKNSKFNVLLTTYEFIIKDKSVLSK-------IQWKCMIIDEGHRMKN------HHCKLTQT 688 (1281)
Q Consensus 624 ~~~~g~~~~r~~~~~~--~~~~~~~vvItTye~l~~~~~~l~~-------~~w~~vIvDEaHr~kn------~~s~~~~~ 688 (1281)
+--..++..-++.... .+...|.++..|++.+.+...+..+ -.|.+|-|||.|.+.. +..+...+
T Consensus 164 lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~i 243 (695)
T KOG0353|consen 164 LNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGI 243 (695)
T ss_pred ccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHH
Confidence 5555555554444433 3567899999999998776544333 3688999999999863 33455567
Q ss_pred HHhhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHH
Q psy7773 689 LNTFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFL 768 (1281)
Q Consensus 689 l~~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 768 (1281)
|++.|+....++||||...+-+.+...+|..- ..-.|..-|++|
T Consensus 244 lkrqf~~~~iigltatatn~vl~d~k~il~ie------~~~tf~a~fnr~------------------------------ 287 (695)
T KOG0353|consen 244 LKRQFKGAPIIGLTATATNHVLDDAKDILCIE------AAFTFRAGFNRP------------------------------ 287 (695)
T ss_pred HHHhCCCCceeeeehhhhcchhhHHHHHHhHH------hhheeecccCCC------------------------------
Confidence 77777888999999999888877776665421 111223333322
Q ss_pred HHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhH
Q psy7773 769 LRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIE 848 (1281)
Q Consensus 769 lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~ 848 (1281)
.....++.-|- +....
T Consensus 288 -------------nl~yev~qkp~------------------------------n~dd~--------------------- 303 (695)
T KOG0353|consen 288 -------------NLKYEVRQKPG------------------------------NEDDC--------------------- 303 (695)
T ss_pred -------------CceeEeeeCCC------------------------------ChHHH---------------------
Confidence 11111111000 00000
Q ss_pred HHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHH
Q psy7773 849 EKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRG 928 (1281)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~ 928 (1281)
.+-+.++++.- -.|..-||||-...-.+.+...|...|+....+|..+.+.+|.
T Consensus 304 -------------------------~edi~k~i~~~-f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks 357 (695)
T KOG0353|consen 304 -------------------------IEDIAKLIKGD-FAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKS 357 (695)
T ss_pred -------------------------HHHHHHHhccc-cCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccc
Confidence 01111122111 1345569999999889999999999999999999999999999
Q ss_pred HHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhh-------------------------------
Q psy7773 929 ELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQ------------------------------- 977 (1281)
Q Consensus 929 ~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Q------------------------------- 977 (1281)
-+-..|-.++ ++| +++|-+.|.||+-++...||+..+|-+..+|.|
T Consensus 358 ~~hq~w~a~e--iqv-ivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevct 434 (695)
T KOG0353|consen 358 GAHQGWIAGE--IQV-IVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCT 434 (695)
T ss_pred cccccccccc--eEE-EEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhc
Confidence 9999998754 555 889999999999999999999999999999999
Q ss_pred ------------HhHhHHhhCCCCceEEEEE
Q psy7773 978 ------------AQDRAHRIGQKNEVRVLRL 996 (1281)
Q Consensus 978 ------------a~gR~~RiGQ~k~V~V~rl 996 (1281)
--||++|-|++-++..|+=
T Consensus 435 nfkiffavfsekesgragrd~~~a~cilyy~ 465 (695)
T KOG0353|consen 435 NFKIFFAVFSEKESGRAGRDDMKADCILYYG 465 (695)
T ss_pred cceeeeeeecchhccccccCCCcccEEEEec
Confidence 5688999999999766653
No 140
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.51 E-value=2.7e-13 Score=166.75 Aligned_cols=187 Identities=14% Similarity=0.188 Sum_probs=143.3
Q ss_pred HHHHHhhhhHHhhchhhhh--hcCCCceEEEEEeCCCHHHHHHHHHHHHhhhhhccccccCCCCCCchHHHHHHHHHHHH
Q psy7773 56 RLHKVLRPFLLRRLKKEVE--SQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRK 133 (1281)
Q Consensus 56 ~L~~~l~~~~lRR~k~dv~--~~LP~k~~~~v~v~ls~~Q~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~ 133 (1281)
.|..++.|.+.+-...+.. ..|.+.....|+|+|++.....|-.... . . +.+.
T Consensus 420 ~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~-----------------~-~-------k~~l 474 (732)
T TIGR00603 420 DLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENS-----------------R-K-------RMLL 474 (732)
T ss_pred hhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcc-----------------h-h-------hhHH
Confidence 4666777877666555554 3588888899999999976444421100 0 0 0000
Q ss_pred HcCCCcCchhhHHHHhhhhcCCCccccCCcccccCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEE
Q psy7773 134 LCNHPFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYL 213 (1281)
Q Consensus 134 ~~~hP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~ 213 (1281)
++ ....|+.++..++......++|+||||++...+..+...| |. .
T Consensus 475 ~~------------------------------~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~~--~ 519 (732)
T TIGR00603 475 YV------------------------------MNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---GK--P 519 (732)
T ss_pred hh------------------------------hChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---CC--c
Confidence 01 1247899998888776668899999999999888888776 43 4
Q ss_pred EecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEEeCCCC-CcchhhHHhHhhhhcCCCC-----e
Q psy7773 214 RLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDW-NPHQDLQAQDRAHRIGQKN-----E 287 (1281)
Q Consensus 214 ~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~w-np~~~~Qa~gR~~R~Gq~~-----~ 287 (1281)
.++|.++..+|..+++.|+++. .+.++ +++++|++|||++.|++||++++++ |+..+.||+||+.|.+..+ +
T Consensus 520 ~I~G~ts~~ER~~il~~Fr~~~-~i~vL-v~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~ 597 (732)
T TIGR00603 520 FIYGPTSQQERMQILQNFQHNP-KVNTI-FLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYN 597 (732)
T ss_pred eEECCCCHHHHHHHHHHHHhCC-CccEE-EEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCcccccc
Confidence 5899999999999999998632 34554 4459999999999999999999987 9999999999999998754 3
Q ss_pred EEEEEEEeccchHHHHH
Q psy7773 288 VRVLRLITVNSVEERIL 304 (1281)
Q Consensus 288 V~v~~l~~~~Tiee~i~ 304 (1281)
.++|.|++++|.|+..-
T Consensus 598 A~fY~lVs~dT~E~~~s 614 (732)
T TIGR00603 598 AFFYSLVSKDTQEMYYS 614 (732)
T ss_pred ceEEEEecCCchHHHHH
Confidence 79999999999998773
No 141
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.50 E-value=7.8e-13 Score=171.18 Aligned_cols=107 Identities=14% Similarity=0.154 Sum_probs=87.7
Q ss_pred CCeEEEEechHHHHHHHHHHHHHCC---CcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEE
Q psy7773 888 KHRVLMFCQMTQLMTILEDYFIWRD---FSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVI 964 (1281)
Q Consensus 888 ~~kvLIFsq~~~~ld~L~~~L~~~g---~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI 964 (1281)
...||||+.....++.+...|...+ +.++-++|+++.++|.+++..+. ... +|+||.+++.||+++++++||
T Consensus 279 ~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~----~rk-IVLATNIAEtSLTIpgV~yVI 353 (1283)
T TIGR01967 279 PGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHS----GRR-IVLATNVAETSLTVPGIHYVI 353 (1283)
T ss_pred CCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCC----Cce-EEEeccHHHhccccCCeeEEE
Confidence 4579999999999999999998765 45788999999999998855442 233 589999999999999999999
Q ss_pred EeCCC------------------CChhhhhhHhHhHHhhCCCCceEEEEEEeCCCH
Q psy7773 965 IFDSD------------------WNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSV 1002 (1281)
Q Consensus 965 ~~D~~------------------wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~ti 1002 (1281)
.++.. -+-..+.||.||++|.| +-.+|+|++....
T Consensus 354 DsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~ 406 (1283)
T TIGR01967 354 DTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDF 406 (1283)
T ss_pred eCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHH
Confidence 98732 14468999999999998 5678899986544
No 142
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.49 E-value=2e-13 Score=146.58 Aligned_cols=160 Identities=26% Similarity=0.347 Sum_probs=113.4
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHCCC-
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWAPS- 620 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~p~- 620 (1281)
..+|+|||..++..+.... .++++..++|+|||.+++.++....... ..+++||++|. ++..+|...+..+++.
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~---~~~~i~~~~GsGKT~~~~~~~~~~~~~~-~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGL---RDVILAAPTGSGKTLAALLPALEALKRG-KGKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCHHHHHHHHHHHcCC---CcEEEECCCCCchhHHHHHHHHHHhccc-CCCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 4579999999998877421 6889999999999998887777766433 24689999995 5569999999998866
Q ss_pred --CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccc--cccCceeEEEEeCCccccc-cc-hHHHHHHHhhhc
Q psy7773 621 --ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSV--LSKIQWKCMIIDEGHRMKN-HH-CKLTQTLNTFYN 694 (1281)
Q Consensus 621 --~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~--l~~~~w~~vIvDEaHr~kn-~~-s~~~~~l~~~~~ 694 (1281)
.....+.+..... ... .......+|+++|++.+...... +....|+++||||+|++.+ .. ......+..+..
T Consensus 82 ~~~~~~~~~~~~~~~-~~~-~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~ 159 (201)
T smart00487 82 GLKVVGLYGGDSKRE-QLR-KLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPK 159 (201)
T ss_pred CeEEEEEeCCcchHH-HHH-HHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCc
Confidence 3344455543222 111 12233349999999998876544 4455789999999999995 33 333333333335
Q ss_pred cCcEEEeecCCCCC
Q psy7773 695 SSHRVLLTGTPLQN 708 (1281)
Q Consensus 695 ~~~rllLTgTPl~n 708 (1281)
..+++++||||..+
T Consensus 160 ~~~~v~~saT~~~~ 173 (201)
T smart00487 160 NVQLLLLSATPPEE 173 (201)
T ss_pred cceEEEEecCCchh
Confidence 78889999999744
No 143
>KOG0952|consensus
Probab=99.49 E-value=2e-12 Score=156.73 Aligned_cols=326 Identities=21% Similarity=0.221 Sum_probs=188.1
Q ss_pred hhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC-------CCCCEEEEeCCccH-HHHHHHHHHHCC--CCcEEEEeCC
Q psy7773 560 LYNNNLNGILADEMGLGKTVQTIALLTYLMEKKK-------NLGPYLVIVPLSTL-SNWVLEFEKWAP--SANVVAYKGS 629 (1281)
Q Consensus 560 ~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~-------~~~~~LIV~P~s~l-~~W~~E~~~~~p--~~~~~~~~g~ 629 (1281)
.|..+.|.|++.+||+|||..|...|..++..+. ..-.++-|+|...| .....-|.+-+. ++.|.-+.|.
T Consensus 122 aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD 201 (1230)
T KOG0952|consen 122 AYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGD 201 (1230)
T ss_pred hhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCc
Confidence 4678999999999999999999888888876422 22368999995443 333333333222 5778888887
Q ss_pred HHHHHHHHhhhccCCccEEEechHHHhh-------cccccccCceeEEEEeCCccccccchHH-----HHHHH---hhhc
Q psy7773 630 PLARRALQGRMKNSKFNVLLTTYEFIIK-------DKSVLSKIQWKCMIIDEGHRMKNHHCKL-----TQTLN---TFYN 694 (1281)
Q Consensus 630 ~~~r~~~~~~~~~~~~~vvItTye~l~~-------~~~~l~~~~w~~vIvDEaHr~kn~~s~~-----~~~l~---~~~~ 694 (1281)
...-+.- ....+|+|||++.+-- +..++. ...+|||||.|-+....... ++.+. ....
T Consensus 202 ~ql~~te-----i~~tqiiVTTPEKwDvvTRk~~~d~~l~~--~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs 274 (1230)
T KOG0952|consen 202 TQLTKTE-----IADTQIIVTTPEKWDVVTRKSVGDSALFS--LVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQS 274 (1230)
T ss_pred chhhHHH-----HHhcCEEEecccceeeeeeeeccchhhhh--heeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhh
Confidence 5443221 3467999999997521 111111 46799999999998655432 22221 1113
Q ss_pred cCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHH
Q psy7773 695 SSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKK 774 (1281)
Q Consensus 695 ~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~ 774 (1281)
.-+.++||||- . | +-.+..||........-.|...|. |.
T Consensus 275 ~IRivgLSATl-P-N---~eDvA~fL~vn~~~glfsFd~~yR-----------------------------Pv------- 313 (1230)
T KOG0952|consen 275 MIRIVGLSATL-P-N---YEDVARFLRVNPYAGLFSFDQRYR-----------------------------PV------- 313 (1230)
T ss_pred heEEEEeeccC-C-C---HHHHHHHhcCCCccceeeeccccc-----------------------------cc-------
Confidence 34668999993 2 2 333445555544444444433221 11
Q ss_pred HHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhh
Q psy7773 775 EVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQH 854 (1281)
Q Consensus 775 ~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~ 854 (1281)
|- ...++-++ .... ..-... +
T Consensus 314 ------pL-~~~~iG~k----------------------------~~~~-~~~~~~---~-------------------- 334 (1230)
T KOG0952|consen 314 ------PL-TQGFIGIK----------------------------GKKN-RQQKKN---I-------------------- 334 (1230)
T ss_pred ------ce-eeeEEeee----------------------------cccc-hhhhhh---H--------------------
Confidence 00 00001000 0000 000000 0
Q ss_pred hcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHH----HCCCc----------------
Q psy7773 855 IGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFI----WRDFS---------------- 914 (1281)
Q Consensus 855 ~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~----~~g~~---------------- 914 (1281)
.-+++..+. ++...||.|+||++.+...--.+..|. ..|..
T Consensus 335 ---------------d~~~~~kv~----e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf 395 (1230)
T KOG0952|consen 335 ---------------DEVCYDKVV----EFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELF 395 (1230)
T ss_pred ---------------HHHHHHHHH----HHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHH
Confidence 001222222 233568899999987654433333332 22322
Q ss_pred ---EEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChh----------hhhhHhHh
Q psy7773 915 ---YLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPH----------QDLQAQDR 981 (1281)
Q Consensus 915 ---~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~----------~~~Qa~gR 981 (1281)
...-|.++.-.+|+-.-+.|..|.-+ +|+||...+-|+||++-..+|-=-..|++. ..+|-.||
T Consensus 396 ~~g~~iHhAGm~r~DR~l~E~~F~~G~i~---vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGR 472 (1230)
T KOG0952|consen 396 QQGMGIHHAGMLRSDRQLVEKEFKEGHIK---VLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGR 472 (1230)
T ss_pred HhhhhhcccccchhhHHHHHHHHhcCCce---EEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhc
Confidence 22345667788999999999986544 599999999999999766666544455554 46899999
Q ss_pred HHhhCCCCceEEEEEEeC-------------CCHHHHHHHHHHHHH
Q psy7773 982 AHRIGQKNEVRVLRLITV-------------NSVEERILAAARYKL 1014 (1281)
Q Consensus 982 ~~RiGQ~k~V~V~rli~~-------------~tiEe~I~~~~~~K~ 1014 (1281)
|+|.+=.+.-..+-+.+. +.||.+.+..+..-+
T Consensus 473 AGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnL 518 (1230)
T KOG0952|consen 473 AGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNL 518 (1230)
T ss_pred cCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhh
Confidence 999765444333333332 346767666655443
No 144
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.47 E-value=7.4e-14 Score=125.87 Aligned_cols=78 Identities=32% Similarity=0.592 Sum_probs=73.0
Q ss_pred HHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhc
Q psy7773 203 DYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRI 282 (1281)
Q Consensus 203 ~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~ 282 (1281)
++|...|+.+..+||+++..+|..+++.|+.+... +|++|.++++|+|++.+++||+++++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~---vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIR---VLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSS---EEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCce---EEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 36788999999999999999999999999987663 678889999999999999999999999999999999999999
Q ss_pred C
Q psy7773 283 G 283 (1281)
Q Consensus 283 G 283 (1281)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 8
No 145
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.44 E-value=7.4e-13 Score=133.58 Aligned_cols=137 Identities=22% Similarity=0.304 Sum_probs=99.2
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHH-HHHHHHHHHCC-CCcEEEEeCCHHHHHHHHhhhccC
Q psy7773 566 NGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLS-NWVLEFEKWAP-SANVVAYKGSPLARRALQGRMKNS 643 (1281)
Q Consensus 566 ~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~-~W~~E~~~~~p-~~~~~~~~g~~~~r~~~~~~~~~~ 643 (1281)
++++..++|+|||.+++.++..+... ...+++||+||...+. +|...+..+.+ ...+..+.+........ .....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 78 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS-LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE--KLLSG 78 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc-ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH--HHhcC
Confidence 67899999999999999999888755 3457999999998875 45566777765 46666666654433322 22246
Q ss_pred CccEEEechHHHhhccccc--ccCceeEEEEeCCccccccchHHH--HHHHhhhccCcEEEeecCC
Q psy7773 644 KFNVLLTTYEFIIKDKSVL--SKIQWKCMIIDEGHRMKNHHCKLT--QTLNTFYNSSHRVLLTGTP 705 (1281)
Q Consensus 644 ~~~vvItTye~l~~~~~~l--~~~~w~~vIvDEaHr~kn~~s~~~--~~l~~~~~~~~rllLTgTP 705 (1281)
..+++++||+.+....... ....|++|||||+|.+.+...... ..........++++|||||
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 7899999999887654332 344799999999999998765443 1222233677889999998
No 146
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.43 E-value=8.1e-12 Score=159.02 Aligned_cols=350 Identities=18% Similarity=0.149 Sum_probs=210.1
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHh-cCCCCCEEEEeCCccH-HHHHHHHHHHCCC
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEK-KKNLGPYLVIVPLSTL-SNWVLEFEKWAPS 620 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~-~~~~~~~LIV~P~s~l-~~W~~E~~~~~p~ 620 (1281)
+...+++|..++++.......+..++|..+||.|||..++.+..++... .....+++.|.|..++ .+..+.+..++..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~ 272 (733)
T COG1203 193 EHEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGL 272 (733)
T ss_pred CchhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcc
Confidence 4456999999999998877766578999999999999999998888766 3355688888897665 6677778877755
Q ss_pred CcEEEE--eCCHHHHHHHHhh------------hccCCccEEEechHHHhhc------ccccccCceeEEEEeCCccccc
Q psy7773 621 ANVVAY--KGSPLARRALQGR------------MKNSKFNVLLTTYEFIIKD------KSVLSKIQWKCMIIDEGHRMKN 680 (1281)
Q Consensus 621 ~~~~~~--~g~~~~r~~~~~~------------~~~~~~~vvItTye~l~~~------~~~l~~~~w~~vIvDEaHr~kn 680 (1281)
..+..- +|.....-..... ....-+.+.+++...+... ...+..+.-.++|+||+|-+--
T Consensus 273 ~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~ 352 (733)
T COG1203 273 FSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYAD 352 (733)
T ss_pred cccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcc
Confidence 444443 4443322111110 0011122222222222221 0113334567999999999876
Q ss_pred c-chHHHHHHHhhh--ccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHH
Q psy7773 681 H-HCKLTQTLNTFY--NSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILII 757 (1281)
Q Consensus 681 ~-~s~~~~~l~~~~--~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~ 757 (1281)
. ......++.... .....+++|||+-.- |.+.+
T Consensus 353 ~~~~~~l~~~i~~l~~~g~~ill~SATlP~~----------------------~~~~l---------------------- 388 (733)
T COG1203 353 ETMLAALLALLEALAEAGVPVLLMSATLPPF----------------------LKEKL---------------------- 388 (733)
T ss_pred cchHHHHHHHHHHHHhCCCCEEEEecCCCHH----------------------HHHHH----------------------
Confidence 5 332222222221 356789999996211 11100
Q ss_pred HHHHHhhhHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHh
Q psy7773 758 RRLHKVLRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKL 837 (1281)
Q Consensus 758 ~~L~~~l~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~ 837 (1281)
...+... ..+ ..+.+ .| ..
T Consensus 389 ---~~~~~~~------~~~--~~~~~-----~~---------------------------------------------~~ 407 (733)
T COG1203 389 ---KKALGKG------REV--VENAK-----FC---------------------------------------------PK 407 (733)
T ss_pred ---HHHHhcc------cce--ecccc-----cc---------------------------------------------cc
Confidence 0000000 000 00000 00 00
Q ss_pred cCCccchhhhHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEE
Q psy7773 838 CNHPFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLR 917 (1281)
Q Consensus 838 ~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~ 917 (1281)
++.|.+........ ...+. ..+......-...+.+|+|.++.+..+..+...|...+.+++.
T Consensus 408 ~~e~~~~~~~~~~~-----------------~~~~~-~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~L 469 (733)
T COG1203 408 EDEPGLKRKERVDV-----------------EDGPQ-EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLL 469 (733)
T ss_pred ccccccccccchhh-----------------hhhhh-HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEE
Confidence 01111100000000 00000 1122222333456789999999999999999999999889999
Q ss_pred EeCCCChHHHHHHHHhhcC--CCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhC--CCCceEE
Q psy7773 918 LDGTTKSEDRGELLRKFNE--PESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIG--QKNEVRV 993 (1281)
Q Consensus 918 l~G~~~~~~R~~~i~~Fn~--~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiG--Q~k~V~V 993 (1281)
+||..+..+|.+.++.... .....+ ++|||.+...|+|+. .|.+|- | .--....+||.||++|-| ....+.|
T Consensus 470 lHSRf~~~dR~~ke~~l~~~~~~~~~~-IvVaTQVIEagvDid-fd~mIT-e-~aPidSLIQR~GRv~R~g~~~~~~~~v 545 (733)
T COG1203 470 LHSRFTLKDREEKERELKKLFKQNEGF-IVVATQVIEAGVDID-FDVLIT-E-LAPIDSLIQRAGRVNRHGKKENGKIYV 545 (733)
T ss_pred EecccchhhHHHHHHHHHHHHhccCCe-EEEEeeEEEEEeccc-cCeeee-c-CCCHHHHHHHHHHHhhcccccCCceeE
Confidence 9999999999999985442 112233 589999999999975 777763 2 223467899999999999 5566888
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHH
Q psy7773 994 LRLITVNSVEERILAAARYKLNMDEK 1019 (1281)
Q Consensus 994 ~rli~~~tiEe~I~~~~~~K~~l~~~ 1019 (1281)
|...-......+.+.....++.....
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (733)
T COG1203 546 YNDEERGPYLKYSYEKLEKKLKSLEE 571 (733)
T ss_pred eecccCCCchhhhhhcchhhhccccc
Confidence 88888888888888776666554433
No 147
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.40 E-value=1.9e-12 Score=147.15 Aligned_cols=139 Identities=22% Similarity=0.327 Sum_probs=123.1
Q ss_pred cCcHHHHHHHHHHHhh--hCCCeEEEEeccHHHHHHHHHHHHhCCCcEE-EecC--------CCCHHHHHHHHHHhcCCC
Q psy7773 167 TSGKFELLDRILPKFK--ETKHRVLMFCQMTQLMTILEDYFIWRDFSYL-RLDG--------TTKSEDRGELLRKFNEPE 235 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~--~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~-~~~g--------~~~~~~R~~~i~~F~~~~ 235 (1281)
.-||+..|.++|.+.. ..+.+||||++|+++++.|..+|...|+... +|-| +|++.+..+++++|++|.
T Consensus 346 ~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge 425 (542)
T COG1111 346 EHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGE 425 (542)
T ss_pred CCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCC
Confidence 4689999999999876 5668999999999999999999999988764 5544 589999999999999866
Q ss_pred CCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhcc
Q psy7773 236 SKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKL 311 (1281)
Q Consensus 236 ~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~ 311 (1281)
.. +|++|.+|-+||++..++.||+|||.-+|-+..||.||.+|. +.=+||.|+++||-|+.-|....+|.
T Consensus 426 ~n---VLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~---r~Grv~vLvt~gtrdeayy~~s~rke 495 (542)
T COG1111 426 YN---VLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEAYYYSSRRKE 495 (542)
T ss_pred ce---EEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC---CCCeEEEEEecCchHHHHHHHHHHHH
Confidence 44 488999999999999999999999999999999999999885 56789999999999998888777774
No 148
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.40 E-value=3.1e-11 Score=149.54 Aligned_cols=117 Identities=15% Similarity=0.176 Sum_probs=104.2
Q ss_pred cchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccc
Q psy7773 871 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 950 (1281)
Q Consensus 871 s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~a 950 (1281)
..|+..|...+..+...+..|||||.++...+.|..+|...|+++..|++ ...+|...+..|..+.+. ++|+|..
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~---VtIATNM 655 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGA---VTIATNM 655 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCe---EEEeccC
Confidence 46999999999988888999999999999999999999999999999997 677999999999875544 6999999
Q ss_pred cccccCcccCC--------EEEEeCCCCChhhhhhHhHhHHhhCCCCceE
Q psy7773 951 GGLGLNLQAAD--------TVIIFDSDWNPHQDLQAQDRAHRIGQKNEVR 992 (1281)
Q Consensus 951 gg~GlNL~~ad--------~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~ 992 (1281)
+|+|+|+.-.. +||.++.+-+...|.|++||++|.|..-...
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ 705 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESV 705 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceE
Confidence 99999998433 4588999999999999999999999987653
No 149
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.39 E-value=7.4e-13 Score=120.31 Aligned_cols=81 Identities=35% Similarity=0.519 Sum_probs=75.3
Q ss_pred HHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhH
Q psy7773 903 ILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRA 982 (1281)
Q Consensus 903 ~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~ 982 (1281)
.|..+|...++.+..++|+++..+|..+++.|+.+.. .+|++|.++++|+|++.+++||+++++||+..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 4677888889999999999999999999999998655 3689999999999999999999999999999999999999
Q ss_pred HhhC
Q psy7773 983 HRIG 986 (1281)
Q Consensus 983 ~RiG 986 (1281)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9987
No 150
>KOG0328|consensus
Probab=99.36 E-value=2.6e-12 Score=134.42 Aligned_cols=124 Identities=19% Similarity=0.384 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccc
Q psy7773 170 KFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGG 249 (1281)
Q Consensus 170 K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~ 249 (1281)
|+..|.++...+ .-...||||+....+++|.+.+...++.+..+||.+++++|.+++..|+.+.++ +|++|++-+
T Consensus 253 KfdtLcdLYd~L--tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~Sr---vLitTDVwa 327 (400)
T KOG0328|consen 253 KFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSR---VLITTDVWA 327 (400)
T ss_pred hHhHHHHHhhhh--ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCce---EEEEechhh
Confidence 777888777665 336799999999999999999999999999999999999999999999998776 689999999
Q ss_pred cCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchH
Q psy7773 250 LGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVE 300 (1281)
Q Consensus 250 ~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tie 300 (1281)
.|+++|..+.||+||+|-|+..|.+||||.+|.|.+ -.+.+|+..+.+.
T Consensus 328 RGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRk--GvainFVk~~d~~ 376 (400)
T KOG0328|consen 328 RGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRK--GVAINFVKSDDLR 376 (400)
T ss_pred ccCCcceeEEEEecCCCccHHHHhhhhccccccCCc--ceEEEEecHHHHH
Confidence 999999999999999999999999999999999985 3556777776554
No 151
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.36 E-value=1.1e-11 Score=134.35 Aligned_cols=156 Identities=16% Similarity=0.156 Sum_probs=106.3
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhc--CCCCCEEEEeCCcc-HHHHHHHHHHHCC--
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKK--KNLGPYLVIVPLST-LSNWVLEFEKWAP-- 619 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~--~~~~~~LIV~P~s~-l~~W~~E~~~~~p-- 619 (1281)
.|++||.++++.+.. +.+.+++.++|+|||++++..+...+... .....+|||||... +.||...+..+..
T Consensus 21 ~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 589999999987774 77899999999999998655544444333 34457999999754 5888888888864
Q ss_pred CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCccccccc-hHHHH-HHHhhhcc
Q psy7773 620 SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNHH-CKLTQ-TLNTFYNS 695 (1281)
Q Consensus 620 ~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~~-s~~~~-~l~~~~~~ 695 (1281)
+..+..+.|.......... .....+|+|+|++.+.... ..+.-..++++||||+|++.+.. ..... .+..+-..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~ 174 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRK--LKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKD 174 (203)
T ss_pred CceEEEEECCCCHHHHHHH--hcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccChHHHHHHHHHhCCcc
Confidence 5666777776544332221 1256899999998775531 11222367899999999987543 22222 33333235
Q ss_pred CcEEEeecCCC
Q psy7773 696 SHRVLLTGTPL 706 (1281)
Q Consensus 696 ~~rllLTgTPl 706 (1281)
...+++||||-
T Consensus 175 ~~~~~~SAT~~ 185 (203)
T cd00268 175 RQTLLFSATMP 185 (203)
T ss_pred cEEEEEeccCC
Confidence 66789999986
No 152
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.35 E-value=9.1e-12 Score=130.54 Aligned_cols=158 Identities=19% Similarity=0.262 Sum_probs=110.1
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc-cHHHHHHHHHHHCCC--CcE
Q psy7773 547 KEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS-TLSNWVLEFEKWAPS--ANV 623 (1281)
Q Consensus 547 ~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s-~l~~W~~E~~~~~p~--~~~ 623 (1281)
.|+|.+++.-+. ++.+.|+..+||+|||..++..+...+... ..+.+||+||.. ++.+-..++..++.. ..+
T Consensus 1 t~~Q~~~~~~i~----~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~ 75 (169)
T PF00270_consen 1 TPLQQEAIEAII----SGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRV 75 (169)
T ss_dssp -HHHHHHHHHHH----TTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSE
T ss_pred CHHHHHHHHHHH----cCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeeccccccccccccccccccccccc
Confidence 389999988776 466789999999999999887776665444 446999999975 457888889888854 677
Q ss_pred EEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccc--cccCceeEEEEeCCcccccc--chHHHHHHHhhh--ccCc
Q psy7773 624 VAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSV--LSKIQWKCMIIDEGHRMKNH--HCKLTQTLNTFY--NSSH 697 (1281)
Q Consensus 624 ~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~--l~~~~w~~vIvDEaHr~kn~--~s~~~~~l~~~~--~~~~ 697 (1281)
..+.|............ ....+|+|+|++.|...... +.....++|||||+|.+... .......+..+. ...+
T Consensus 76 ~~~~~~~~~~~~~~~~~-~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~ 154 (169)
T PF00270_consen 76 VLLHGGQSISEDQREVL-SNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQ 154 (169)
T ss_dssp EEESTTSCHHHHHHHHH-HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSE
T ss_pred ccccccccccccccccc-cccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCc
Confidence 77776543221111112 45689999999999765432 22235899999999999763 223334444332 2366
Q ss_pred EEEeecCCCCCChh
Q psy7773 698 RVLLTGTPLQNKLP 711 (1281)
Q Consensus 698 rllLTgTPl~n~~~ 711 (1281)
.++|||||- .+++
T Consensus 155 ~i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 155 IILLSATLP-SNVE 167 (169)
T ss_dssp EEEEESSST-HHHH
T ss_pred EEEEeeCCC-hhHh
Confidence 899999996 4443
No 153
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.34 E-value=1.1e-09 Score=135.66 Aligned_cols=119 Identities=13% Similarity=0.165 Sum_probs=97.0
Q ss_pred cchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccc
Q psy7773 871 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 950 (1281)
Q Consensus 871 s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~a 950 (1281)
..|+.++..-+..+...|.-|||-|.++..-+.|...|...|+++..|+.... ..-..+|..- |..+ .+.|+|..
T Consensus 551 ~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~-~~Ea~iia~A--G~~g--~VTIATNm 625 (970)
T PRK12899 551 REKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH-AQEAEIIAGA--GKLG--AVTVATNM 625 (970)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh-hhHHHHHHhc--CCCC--cEEEeecc
Confidence 57899999988888889999999999999999999999999999999887633 2233444433 3333 26899999
Q ss_pred cccccCcccC--------CEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEE
Q psy7773 951 GGLGLNLQAA--------DTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 994 (1281)
Q Consensus 951 gg~GlNL~~a--------d~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~ 994 (1281)
+|+|.|+.-. =+||.-..+-|...+.|..||++|.|..-....|
T Consensus 626 AGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~ 677 (970)
T PRK12899 626 AGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFF 677 (970)
T ss_pred ccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEE
Confidence 9999997543 3789999999999999999999999998765444
No 154
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.34 E-value=1.7e-12 Score=149.67 Aligned_cols=129 Identities=36% Similarity=0.662 Sum_probs=105.3
Q ss_pred CcccCCHHHHHHHHHHhCCCCCCCHHHHHHHhcccccccCccccccHHHHHHHHHHHHHHhhhhHHhhchhhhhhcCCCc
Q psy7773 1 TPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEK 80 (1281)
Q Consensus 1 TPiqN~~~eL~sll~fL~p~~l~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~dv~~~LP~k 80 (1281)
||++|++.|||++++||.|..+++...|.++|..+ ..........+|+.++.++++||++.++...||+.
T Consensus 171 TP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~----------~~~~~~~~~~~L~~~l~~~~~r~~~~d~~~~lp~~ 240 (299)
T PF00176_consen 171 TPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRP----------DKENSYENIERLRELLSEFMIRRTKKDVEKELPPK 240 (299)
T ss_dssp S-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHH----------HHTHHHHHHHHHHHHHCCCEECHCGGGGCTTSTCE
T ss_pred ccccccccccccchheeeccccccchhhhhhhhhh----------ccccccccccccccccchhhhhhhcccccccCCce
Confidence 99999999999999999999999999999988655 12234556789999999999999999997789999
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhhhhhccccccCCCCCCchHHHHHHHHHHHHHcCCCcCc
Q psy7773 81 VEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMF 141 (1281)
Q Consensus 81 ~~~~v~v~ls~~Q~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~~~~hP~l~ 141 (1281)
.+.++.|+||+.|+.+|+.+............ .........++..+.+||++|+||+|+
T Consensus 241 ~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 241 IEHVINVELSPEQRELYNELLKEARENLKQSS--RKKSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp EEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T----TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHHHHHHHHHhCCcccC
Confidence 99999999999999999998876655443332 233456678999999999999999763
No 155
>PTZ00110 helicase; Provisional
Probab=99.34 E-value=7.6e-12 Score=154.54 Aligned_cols=126 Identities=21% Similarity=0.314 Sum_probs=112.7
Q ss_pred cCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecc
Q psy7773 167 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 246 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~ 246 (1281)
...|...|..+|..+...+.++||||+.....+.|...|...|+++..+||++++.+|..+++.|+++... +|++|.
T Consensus 359 ~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~---ILVaTd 435 (545)
T PTZ00110 359 EHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSP---IMIATD 435 (545)
T ss_pred chhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCc---EEEEcc
Confidence 45688889999988776788999999999999999999999999999999999999999999999986544 588999
Q ss_pred ccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEecc
Q psy7773 247 AGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVN 297 (1281)
Q Consensus 247 ~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~ 297 (1281)
++++|||+..+++||+||+|+++..|.||+||++|.|..-. +|.|++.+
T Consensus 436 v~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~--ai~~~~~~ 484 (545)
T PTZ00110 436 VASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGA--SYTFLTPD 484 (545)
T ss_pred hhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEECcc
Confidence 99999999999999999999999999999999999998644 45556654
No 156
>KOG0331|consensus
Probab=99.33 E-value=5.7e-12 Score=147.56 Aligned_cols=120 Identities=22% Similarity=0.400 Sum_probs=109.9
Q ss_pred cccCcHHHHHHHHHHHhh-hCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEE
Q psy7773 165 YRTSGKFELLDRILPKFK-ETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLL 243 (1281)
Q Consensus 165 ~~~s~K~~~L~~ll~~~~-~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~ 243 (1281)
....+|...|..+|..+. ..+.|+||||+.....+.|...|...|+++..|||+.++.+|..+++.|.++... +|+
T Consensus 320 ~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~---vLV 396 (519)
T KOG0331|consen 320 CDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSP---VLV 396 (519)
T ss_pred cCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcc---eEE
Confidence 345789999999998876 4567999999999999999999999999999999999999999999999987765 688
Q ss_pred eccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCe
Q psy7773 244 STRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNE 287 (1281)
Q Consensus 244 st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~ 287 (1281)
+|++++.||++...++||+||+|-|...|.+|+||.+|.|++-.
T Consensus 397 ATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~ 440 (519)
T KOG0331|consen 397 ATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGT 440 (519)
T ss_pred EcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCce
Confidence 99999999999999999999999999999999999999887543
No 157
>KOG0298|consensus
Probab=99.30 E-value=2e-12 Score=159.84 Aligned_cols=141 Identities=28% Similarity=0.320 Sum_probs=120.9
Q ss_pred CcHHHHHHHHHHHhh--hCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEec
Q psy7773 168 SGKFELLDRILPKFK--ETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLST 245 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~--~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st 245 (1281)
++|+.....++..+. ..-.|||||+++...++.++..+...++.+....++ ++-...+..|.. +.+|++..
T Consensus 1202 g~kI~~v~~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t---~d~~dc~~~fk~----I~clll~~ 1274 (1394)
T KOG0298|consen 1202 GTKIDSVVIAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGET---EDFDDCIICFKS----IDCLLLFV 1274 (1394)
T ss_pred ccCchhHHHHHHHHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCC---cchhhhhhhccc----ceEEEEEe
Confidence 567777765555443 345899999999999999999999999987665552 245667777764 77899999
Q ss_pred cccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhccccch
Q psy7773 246 RAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDE 315 (1281)
Q Consensus 246 ~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~~l~~ 315 (1281)
..+|-|+||..|.||+..+|--||+.+.||+||+||+||++++.||+|+..+|+||.|+.....|...-.
T Consensus 1275 ~~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~~ee~l~ 1344 (1394)
T KOG0298|consen 1275 SKGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITSKEETLT 1344 (1394)
T ss_pred ccCcccccHHhhhhhheeccccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhhhHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999998888865533
No 158
>KOG0951|consensus
Probab=99.29 E-value=7.2e-11 Score=145.08 Aligned_cols=173 Identities=17% Similarity=0.148 Sum_probs=102.0
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCC--------CCCEEEEeC-CccHHHHHHHHH
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKN--------LGPYLVIVP-LSTLSNWVLEFE 615 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~--------~~~~LIV~P-~s~l~~W~~E~~ 615 (1281)
.|-+.|-....-. .....|.+||.+||.|||..|+.-+..-+..+.+ ...+.-|+| .+++..|...|.
T Consensus 309 sLNrIQS~v~daA---l~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfS 385 (1674)
T KOG0951|consen 309 SLNRIQSKVYDAA---LRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFS 385 (1674)
T ss_pred hhhHHHHHHHHHH---hcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHH
Confidence 4555555433322 2345677999999999999988666554433322 124577888 577799999999
Q ss_pred HHCCCCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHH---hhcccccc-cCceeEEEEeCCcccc-ccchHHHHHHH
Q psy7773 616 KWAPSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFI---IKDKSVLS-KIQWKCMIIDEGHRMK-NHHCKLTQTLN 690 (1281)
Q Consensus 616 ~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l---~~~~~~l~-~~~w~~vIvDEaHr~k-n~~s~~~~~l~ 690 (1281)
+|...+.+.|..-+++...... ....-+|++||++.. .+...... ..-+.++|+||.|-+- +..+.+-.++.
T Consensus 386 kRla~~GI~V~ElTgD~~l~~~---qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVa 462 (1674)
T KOG0951|consen 386 KRLAPLGITVLELTGDSQLGKE---QIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVA 462 (1674)
T ss_pred hhccccCcEEEEecccccchhh---hhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHH
Confidence 9998777766654443322111 124467999999865 11111111 1135789999999994 33444433322
Q ss_pred hhh-------ccCcEEEeecCCCCCChhHHHHHHhhhcCCCC
Q psy7773 691 TFY-------NSSHRVLLTGTPLQNKLPELWALLNFLLPSIF 725 (1281)
Q Consensus 691 ~~~-------~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~ 725 (1281)
+.+ ...+.++||||-- |..|..+.|..-.+++|
T Consensus 463 Rt~r~ses~~e~~RlVGLSATLP--Ny~DV~~Fl~v~~~glf 502 (1674)
T KOG0951|consen 463 RTFRRSESTEEGSRLVGLSATLP--NYEDVASFLRVDPEGLF 502 (1674)
T ss_pred HHHHHhhhcccCceeeeecccCC--chhhhHHHhccCccccc
Confidence 222 1345679999942 44555554433334444
No 159
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.29 E-value=6.4e-12 Score=114.12 Aligned_cols=81 Identities=35% Similarity=0.519 Sum_probs=74.7
Q ss_pred HHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhh
Q psy7773 200 ILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRA 279 (1281)
Q Consensus 200 ~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~ 279 (1281)
.|...|...++.+..++|.++..+|..++..|+++.. .+|++|.++++|+|++.+++||+++++||+..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 4667788889999999999999999999999998654 5788899999999999999999999999999999999999
Q ss_pred hhcC
Q psy7773 280 HRIG 283 (1281)
Q Consensus 280 ~R~G 283 (1281)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9987
No 160
>KOG0333|consensus
Probab=99.29 E-value=1.4e-11 Score=139.41 Aligned_cols=119 Identities=19% Similarity=0.260 Sum_probs=109.1
Q ss_pred cccCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEe
Q psy7773 165 YRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLS 244 (1281)
Q Consensus 165 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~s 244 (1281)
+..+.|+..|.++|... ....+|||.+.....+.|.+.|...|+.++++||+.++++|+.++..|+++..+ +|++
T Consensus 499 ~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~d---IlVa 573 (673)
T KOG0333|consen 499 VSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGD---ILVA 573 (673)
T ss_pred ecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCC---EEEE
Confidence 34578999999999875 456899999999999999999999999999999999999999999999987666 6888
Q ss_pred ccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeE
Q psy7773 245 TRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEV 288 (1281)
Q Consensus 245 t~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V 288 (1281)
|+++|.||+++..++||+||..-+-..|.+||||.+|.|+.-.+
T Consensus 574 TDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gta 617 (673)
T KOG0333|consen 574 TDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTA 617 (673)
T ss_pred ecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCcee
Confidence 99999999999999999999999999999999999999996543
No 161
>KOG0330|consensus
Probab=99.28 E-value=2.4e-11 Score=133.18 Aligned_cols=125 Identities=22% Similarity=0.330 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccc
Q psy7773 170 KFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGG 249 (1281)
Q Consensus 170 K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~ 249 (1281)
|-..|..+|... .|..+||||....+...+.-.|...|+.+..+||.|++..|...++.|+++... +|++|++|+
T Consensus 287 K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~---iLv~TDVaS 361 (476)
T KOG0330|consen 287 KDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARS---ILVCTDVAS 361 (476)
T ss_pred cchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCc---EEEecchhc
Confidence 445566666544 457899999999999999999999999999999999999999999999986543 688999999
Q ss_pred cCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHH
Q psy7773 250 LGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEE 301 (1281)
Q Consensus 250 ~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee 301 (1281)
.||+.+.+++||+||.|-+-..|.+|.||+.|.| +.-.+..||+.-.+|-
T Consensus 362 RGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve~ 411 (476)
T KOG0330|consen 362 RGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVEL 411 (476)
T ss_pred ccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEehhhhHH
Confidence 9999999999999999999999999999999999 5677888898855553
No 162
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.26 E-value=4.6e-09 Score=127.20 Aligned_cols=406 Identities=15% Similarity=0.109 Sum_probs=217.4
Q ss_pred ccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH----HHHHHHHHHH
Q psy7773 542 VNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL----SNWVLEFEKW 617 (1281)
Q Consensus 542 ~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l----~~W~~E~~~~ 617 (1281)
++-.+++-|+-|..-|+. |.|.-..||.|||++|...+.... -....+.||+|+..| .+|...+-.|
T Consensus 75 lg~r~ydvQlig~l~Ll~------G~VaEM~TGEGKTLvA~l~a~l~A---L~G~~VhvvT~NdyLA~RDae~m~~ly~~ 145 (764)
T PRK12326 75 LGLRPFDVQLLGALRLLA------GDVIEMATGEGKTLAGAIAAAGYA---LQGRRVHVITVNDYLARRDAEWMGPLYEA 145 (764)
T ss_pred cCCCcchHHHHHHHHHhC------CCcccccCCCCHHHHHHHHHHHHH---HcCCCeEEEcCCHHHHHHHHHHHHHHHHh
Confidence 466788899999876652 567778899999999876554433 223588999999888 4577777777
Q ss_pred CCCCcEEEEeCCHHH--HHHHHhhhccCCccEEEechHHHh-----hc----ccccccCceeEEEEeCCccccccchHHH
Q psy7773 618 APSANVVAYKGSPLA--RRALQGRMKNSKFNVLLTTYEFII-----KD----KSVLSKIQWKCMIIDEGHRMKNHHCKLT 686 (1281)
Q Consensus 618 ~p~~~~~~~~g~~~~--r~~~~~~~~~~~~~vvItTye~l~-----~~----~~~l~~~~w~~vIvDEaHr~kn~~s~~~ 686 (1281)
+ ++.+.+..+.... ++.. -.++|+-+|-.-|. .. ....-.-.++++||||+..+.=.
T Consensus 146 L-GLsvg~i~~~~~~~err~a------Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLID----- 213 (764)
T PRK12326 146 L-GLTVGWITEESTPEERRAA------YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVD----- 213 (764)
T ss_pred c-CCEEEEECCCCCHHHHHHH------HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheec-----
Confidence 6 6777766554322 2221 23566666654432 11 11222336889999999965322
Q ss_pred HHHHhhhccCcEEEeecCCCC-CChhHHHHHHhhhcCCC-CC----C------h---hHHHHHhcccccCCcccccCCHH
Q psy7773 687 QTLNTFYNSSHRVLLTGTPLQ-NKLPELWALLNFLLPSI-FK----S------C---STFEQWFNAPFATTGEKVELNEE 751 (1281)
Q Consensus 687 ~~l~~~~~~~~rllLTgTPl~-n~~~el~~ll~fl~p~~-~~----~------~---~~f~~~f~~~~~~~~~~~~~~~~ 751 (1281)
.++.-|++||.+-. +....++.++.-|.++. |. . . ....+.+... .. ...+
T Consensus 214 -------eArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~-----~l--y~~~ 279 (764)
T PRK12326 214 -------EALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGI-----DL--YSEE 279 (764)
T ss_pred -------cccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCc-----cc--cCcc
Confidence 34556888886533 23333344444443331 10 0 0 0001111000 00 0000
Q ss_pred HHHHHHHHHHHhhhHH-HHHHhHHHHhhcCCCceEEEEE------cCCCHHHHHHHHHHHhcccccccCCccCCCCCCch
Q psy7773 752 ETILIIRRLHKVLRPF-LLRRLKKEVESQLPEKVEYIIK------CDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGA 824 (1281)
Q Consensus 752 ~~~~~~~~L~~~l~~~-~lRR~k~~v~~~lP~k~~~~v~------~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~ 824 (1281)
.....+..+...|+.. ++.|-+..+ +-+....+|. .+-..++.-+.+.+..+.-........ . ...
T Consensus 280 ~~~~~~~~i~~AL~A~~l~~~d~dYi---V~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~-t---~As 352 (764)
T PRK12326 280 HVGTTLTQVNVALHAHALLQRDVHYI---VRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGE-V---LDT 352 (764)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCcEE---EECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCce-e---eeh
Confidence 0011122222222222 222211111 1111111111 011223334444443322111110000 0 001
Q ss_pred HHHHHHHHHHHHhcCCccchhhhHHHHHhhhcCCCc---------cccCCcc--ccccchHHHHHHHhhhhhhcCCeEEE
Q psy7773 825 RALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNNT---------VVSGPDI--YRTSGKFELLDRILPKFKETKHRVLM 893 (1281)
Q Consensus 825 ~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~---------~~~~~~~--~~~s~K~~~L~~lL~~~~~~~~kvLI 893 (1281)
-++.+.+....+++--.-........+...++.... ....++. .....|+.++..-+..+...|.-|||
T Consensus 353 IT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLV 432 (764)
T PRK12326 353 ITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLV 432 (764)
T ss_pred hhHHHHHHhcchheeecCCChhHHHHHHHHhCCcEEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 112222222222211100001111111111111100 0111111 22357889998888888899999999
Q ss_pred EechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCccc--------------
Q psy7773 894 FCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQA-------------- 959 (1281)
Q Consensus 894 Fsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~-------------- 959 (1281)
.|.++...+.|...|...|+++..|..... ++-..+|..=-. .+ .+-|+|..+|+|-|+.-
T Consensus 433 gt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~AG~--~g--aVTIATNMAGRGTDIkLg~~~~~~~~~V~~~ 507 (764)
T PRK12326 433 GTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEAGK--YG--AVTVSTQMAGRGTDIRLGGSDEADRDRVAEL 507 (764)
T ss_pred EeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhcCC--CC--cEEEEecCCCCccCeecCCCcccchHHHHHc
Confidence 999999999999999999999999987644 333455554433 22 26899999999999763
Q ss_pred -CCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEE
Q psy7773 960 -ADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 994 (1281)
Q Consensus 960 -ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~ 994 (1281)
.=+||....+-|-..+.|..||++|.|..-....|
T Consensus 508 GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~ 543 (764)
T PRK12326 508 GGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF 543 (764)
T ss_pred CCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE
Confidence 33899999999999999999999999998765555
No 163
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.26 E-value=2.1e-11 Score=147.27 Aligned_cols=123 Identities=18% Similarity=0.253 Sum_probs=107.3
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..|+..|..++.. ....++||||+.....+.|...|...|+.+..+||+++..+|..+++.|+++... +|++|.+
T Consensus 240 ~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~---vLVaTdv 314 (423)
T PRK04837 240 EEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLD---ILVATDV 314 (423)
T ss_pred HHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCc---EEEEech
Confidence 4577777777754 2467999999999999999999999999999999999999999999999986554 5888899
Q ss_pred cccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEecc
Q psy7773 248 GGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVN 297 (1281)
Q Consensus 248 ~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~ 297 (1281)
+++|||+..+++||+||+|+++..|.||+||++|.|+.-. ++.|++.+
T Consensus 315 ~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~--ai~~~~~~ 362 (423)
T PRK04837 315 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGH--SISLACEE 362 (423)
T ss_pred hhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCee--EEEEeCHH
Confidence 9999999999999999999999999999999999997643 45556553
No 164
>KOG0329|consensus
Probab=99.24 E-value=4.2e-11 Score=123.59 Aligned_cols=153 Identities=16% Similarity=0.229 Sum_probs=96.4
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHH---HHHCCC
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEF---EKWAPS 620 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~---~~~~p~ 620 (1281)
.+.+-|.+++...+- +...+-..-.|+|||...+..-...++.-...-.+||+|-+..+ .|...|+ .++.|+
T Consensus 64 hpsevqhecipqail----gmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~ 139 (387)
T KOG0329|consen 64 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPS 139 (387)
T ss_pred CchHhhhhhhhHHhh----cchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCC
Confidence 567778888876653 34445556789999977443222222222223367999998766 6666665 456699
Q ss_pred CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhc--ccccccCceeEEEEeCCccccccchHHHHHHHhhh----c
Q psy7773 621 ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKD--KSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFY----N 694 (1281)
Q Consensus 621 ~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~--~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~----~ 694 (1281)
+++.+|.|.-...+... ....-++|++.|+..+... ...|.-.+..+.|+||+..|...- ...+-+..++ +
T Consensus 140 vkvaVFfGG~~Ikkdee--~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~l-DMrRDvQEifr~tp~ 216 (387)
T KOG0329|consen 140 VKVSVFFGGLFIKKDEE--LLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQL-DMRRDVQEIFRMTPH 216 (387)
T ss_pred ceEEEEEcceeccccHH--HHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHH-HHHHHHHHHhhcCcc
Confidence 99999988754433211 1123689999999987643 233444467889999999886432 3344454444 2
Q ss_pred cCcEEEeecC
Q psy7773 695 SSHRVLLTGT 704 (1281)
Q Consensus 695 ~~~rllLTgT 704 (1281)
....+.+|||
T Consensus 217 ~KQvmmfsat 226 (387)
T KOG0329|consen 217 EKQVMMFSAT 226 (387)
T ss_pred cceeeeeeee
Confidence 2345677777
No 165
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.21 E-value=7e-11 Score=143.48 Aligned_cols=118 Identities=19% Similarity=0.315 Sum_probs=103.4
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..|..+|..++.. ....++||||.....++.|...|...|+.+..++|+++..+|..++..|+++... +|++|.+
T Consensus 230 ~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~---vLVaTd~ 304 (434)
T PRK11192 230 EHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVN---VLVATDV 304 (434)
T ss_pred HHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCc---EEEEccc
Confidence 3466677666643 2457999999999999999999999999999999999999999999999986544 5788899
Q ss_pred cccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEE
Q psy7773 248 GGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRV 290 (1281)
Q Consensus 248 ~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v 290 (1281)
+++|||+..+++||+||+|+++..|.||+||++|.|..-.+.+
T Consensus 305 ~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 305 AARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred cccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 9999999999999999999999999999999999998654443
No 166
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.21 E-value=1.1e-08 Score=116.96 Aligned_cols=138 Identities=21% Similarity=0.203 Sum_probs=114.2
Q ss_pred cchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccc
Q psy7773 871 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 950 (1281)
Q Consensus 871 s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~a 950 (1281)
.+-+.-|..-++...+.+.||||-+-...|++-|.+||...|+++..+|..+..-+|..++.+.+.|.-+ +|+....
T Consensus 429 ~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~D---vLVGINL 505 (663)
T COG0556 429 KGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFD---VLVGINL 505 (663)
T ss_pred CCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCcc---EEEeehh
Confidence 3445555555555567899999999999999999999999999999999999999999999999997666 5899999
Q ss_pred cccccCcccCCEEEEeCCC-----CChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHHHHH
Q psy7773 951 GGLGLNLQAADTVIIFDSD-----WNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARY 1012 (1281)
Q Consensus 951 gg~GlNL~~ad~VI~~D~~-----wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~~~~ 1012 (1281)
.-+||||+.+..|.|+|.+ -+-...+|-+|||.|--..+ |..|-=...+|+...|-+...+
T Consensus 506 LREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~Gk-vIlYAD~iT~sM~~Ai~ET~RR 571 (663)
T COG0556 506 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK-VILYADKITDSMQKAIDETERR 571 (663)
T ss_pred hhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCCe-EEEEchhhhHHHHHHHHHHHHH
Confidence 9999999999999999998 48899999999999955444 4444444446777777765543
No 167
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.21 E-value=6.4e-11 Score=146.86 Aligned_cols=122 Identities=17% Similarity=0.332 Sum_probs=105.7
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..|+..|..++.. ..+.++||||+....++.|...|...|+.+..+||+++..+|..+++.|.++... +|++|.+
T Consensus 242 ~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~---VLVaTdv 316 (572)
T PRK04537 242 EEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLE---ILVATDV 316 (572)
T ss_pred HHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEehh
Confidence 3567777776653 3568999999999999999999999999999999999999999999999986544 5888899
Q ss_pred cccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEec
Q psy7773 248 GGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITV 296 (1281)
Q Consensus 248 ~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~ 296 (1281)
++.|||+..+++||+||+||++..|.|++||++|.|..-.+ +.|++.
T Consensus 317 ~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~a--i~~~~~ 363 (572)
T PRK04537 317 AARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDA--ISFACE 363 (572)
T ss_pred hhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceE--EEEecH
Confidence 99999999999999999999999999999999999986543 344443
No 168
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.19 E-value=1.1e-10 Score=143.06 Aligned_cols=124 Identities=20% Similarity=0.346 Sum_probs=107.1
Q ss_pred cCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecc
Q psy7773 167 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 246 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~ 246 (1281)
.+.|...|..++.. ....++||||+.....+.|...|...|+.+..++|+++..+|..+++.|+++... +|++|.
T Consensus 319 ~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~---vLvaT~ 393 (475)
T PRK01297 319 GSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIR---VLVATD 393 (475)
T ss_pred chhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCc---EEEEcc
Confidence 35677777777754 2457999999999999999999999999999999999999999999999986543 578889
Q ss_pred ccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEecc
Q psy7773 247 AGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVN 297 (1281)
Q Consensus 247 ~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~ 297 (1281)
++++|||+..+++||+|++|+++..|.|++||++|.|+.- .++.|+..+
T Consensus 394 ~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g--~~i~~~~~~ 442 (475)
T PRK01297 394 VAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASG--VSISFAGED 442 (475)
T ss_pred ccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCc--eEEEEecHH
Confidence 9999999999999999999999999999999999999854 344445544
No 169
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.18 E-value=1.1e-10 Score=142.60 Aligned_cols=123 Identities=24% Similarity=0.416 Sum_probs=108.0
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..|+..|..+|... .+.++||||+.....+.+...|...|+.+..+||++++.+|..+++.|.++..+ +|++|.+
T Consensus 227 ~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~---vLVaTdv 301 (460)
T PRK11776 227 DERLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCS---VLVATDV 301 (460)
T ss_pred HHHHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCc---EEEEecc
Confidence 34888888888643 457899999999999999999999999999999999999999999999986544 5788899
Q ss_pred cccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEecc
Q psy7773 248 GGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVN 297 (1281)
Q Consensus 248 ~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~ 297 (1281)
+++|||+..+++||+||+|.++..|.||+||++|.|+. -..|.|+..+
T Consensus 302 ~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~--G~ai~l~~~~ 349 (460)
T PRK11776 302 AARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSK--GLALSLVAPE 349 (460)
T ss_pred cccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCc--ceEEEEEchh
Confidence 99999999999999999999999999999999999985 3455566554
No 170
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.1e-10 Score=142.92 Aligned_cols=134 Identities=26% Similarity=0.404 Sum_probs=113.1
Q ss_pred cHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecccc
Q psy7773 169 GKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAG 248 (1281)
Q Consensus 169 ~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~ 248 (1281)
.|+.+|..++.... ..++||||......+.|...|...|+++..|||++++.+|...++.|+++... +|++|+++
T Consensus 259 ~k~~~L~~ll~~~~--~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~---vLVaTDva 333 (513)
T COG0513 259 EKLELLLKLLKDED--EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELR---VLVATDVA 333 (513)
T ss_pred HHHHHHHHHHhcCC--CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCC---EEEEechh
Confidence 49999999987643 34799999999999999999999999999999999999999999999976554 57888999
Q ss_pred ccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhc
Q psy7773 249 GLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYK 310 (1281)
Q Consensus 249 ~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K 310 (1281)
++||++...++||+||+|.++..|.+|+||.+|.|.. =..+.|++. .-|...+......
T Consensus 334 aRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~--G~ai~fv~~-~~e~~~l~~ie~~ 392 (513)
T COG0513 334 ARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRK--GVAISFVTE-EEEVKKLKRIEKR 392 (513)
T ss_pred hccCCccccceeEEccCCCCHHHheeccCccccCCCC--CeEEEEeCc-HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999954 355556665 2344444444444
No 171
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.17 E-value=1.3e-10 Score=143.34 Aligned_cols=125 Identities=22% Similarity=0.287 Sum_probs=107.2
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHh-CCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIW-RDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 246 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~-~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~ 246 (1281)
..|...|..+|........++|||++.....+.|...|.. .|+.+..+||+++..+|..+++.|.++... +|++|.
T Consensus 350 ~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~---ILVaTd 426 (518)
T PLN00206 350 KQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVP---VIVATG 426 (518)
T ss_pred hhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCC---EEEEec
Confidence 4567777777776554556899999999999999999975 699999999999999999999999986554 588889
Q ss_pred ccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEecc
Q psy7773 247 AGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVN 297 (1281)
Q Consensus 247 ~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~ 297 (1281)
++++|||+..+++||+||+|.++..|.||+||++|.|.. -.++.|+..+
T Consensus 427 vl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~--G~ai~f~~~~ 475 (518)
T PLN00206 427 VLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEK--GTAIVFVNEE 475 (518)
T ss_pred HhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCC--eEEEEEEchh
Confidence 999999999999999999999999999999999999975 3444556554
No 172
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.15 E-value=5e-09 Score=136.54 Aligned_cols=89 Identities=15% Similarity=0.244 Sum_probs=64.5
Q ss_pred HHHHHhhhh-hhcCCeEEEEechHHHHHHHHHHHHH----CCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccc
Q psy7773 876 LLDRILPKF-KETKHRVLMFCQMTQLMTILEDYFIW----RDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 950 (1281)
Q Consensus 876 ~L~~lL~~~-~~~~~kvLIFsq~~~~ld~L~~~L~~----~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~a 950 (1281)
.+...|.++ ...+.++|||+.+..+++.+...|.. .+++.+ ..+.. ..|..+++.|..++.. +|++|.+
T Consensus 661 ~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l--~q~~~-~~r~~ll~~F~~~~~~---iLlgt~s 734 (850)
T TIGR01407 661 EIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVL--AQGIN-GSRAKIKKRFNNGEKA---ILLGTSS 734 (850)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceEE--ecCCC-ccHHHHHHHHHhCCCe---EEEEcce
Confidence 344444443 33566899999999999999999875 344433 33332 4789999999885544 6889999
Q ss_pred cccccCcccC--CEEEEeCCCC
Q psy7773 951 GGLGLNLQAA--DTVIIFDSDW 970 (1281)
Q Consensus 951 gg~GlNL~~a--d~VI~~D~~w 970 (1281)
..+|||+++. ..||+.-.|+
T Consensus 735 f~EGVD~~g~~l~~viI~~LPf 756 (850)
T TIGR01407 735 FWEGVDFPGNGLVCLVIPRLPF 756 (850)
T ss_pred eecccccCCCceEEEEEeCCCC
Confidence 9999999974 4677877665
No 173
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.15 E-value=2.2e-10 Score=139.98 Aligned_cols=117 Identities=19% Similarity=0.213 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecccccc
Q psy7773 171 FELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGL 250 (1281)
Q Consensus 171 ~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~ 250 (1281)
+..+..++.. ...+.++||||......+.+...|...|+.+..+||+++..+|..+++.|.++... +|++|.+.|.
T Consensus 213 ~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~---vLVaT~~~~~ 288 (470)
T TIGR00614 213 LEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQ---VVVATVAFGM 288 (470)
T ss_pred HHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCc---EEEEechhhc
Confidence 3344444432 13466779999999999999999999999999999999999999999999976543 4788899999
Q ss_pred CCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEE
Q psy7773 251 GLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 291 (1281)
Q Consensus 251 GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~ 291 (1281)
|||+..+++||+|++|.++..|.|++||++|.|+...+.+|
T Consensus 289 GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 289 GINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred cCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 99999999999999999999999999999999997765554
No 174
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.15 E-value=2.1e-10 Score=139.73 Aligned_cols=121 Identities=21% Similarity=0.308 Sum_probs=102.4
Q ss_pred cHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecccc
Q psy7773 169 GKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAG 248 (1281)
Q Consensus 169 ~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~ 248 (1281)
.|..+|..++.. ....++||||+.....+.|...|...|+.+..+||+++..+|..+++.|.++... +|++|.++
T Consensus 231 ~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~---iLVaTdv~ 305 (456)
T PRK10590 231 RKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR---VLVATDIA 305 (456)
T ss_pred HHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCc---EEEEccHH
Confidence 345555555432 2447899999999999999999999999999999999999999999999986543 57888999
Q ss_pred ccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEec
Q psy7773 249 GLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITV 296 (1281)
Q Consensus 249 ~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~ 296 (1281)
++|||+..+++||+||+|+++..|.|++||++|.|..-. .+.|++.
T Consensus 306 ~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~--ai~l~~~ 351 (456)
T PRK10590 306 ARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGE--ALSLVCV 351 (456)
T ss_pred hcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCee--EEEEecH
Confidence 999999999999999999999999999999999998654 3334443
No 175
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.15 E-value=7.4e-09 Score=128.53 Aligned_cols=120 Identities=15% Similarity=0.158 Sum_probs=98.2
Q ss_pred ccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEecc
Q psy7773 870 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 949 (1281)
Q Consensus 870 ~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~ 949 (1281)
...|+.++.+-+..+...|.-|||-|.++...+.|..+|...|+++-.|..... ++-..++. ++|..+ .+-|+|.
T Consensus 431 ~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa--~AG~~G--aVTIATN 505 (913)
T PRK13103 431 AEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIA--QAGRPG--ALTIATN 505 (913)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHH--cCCCCC--cEEEecc
Confidence 467999999999999999999999999999999999999999999888776533 33344444 333333 2689999
Q ss_pred ccccccCcc-------------------------------------cCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceE
Q psy7773 950 AGGLGLNLQ-------------------------------------AADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVR 992 (1281)
Q Consensus 950 agg~GlNL~-------------------------------------~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~ 992 (1281)
.+|+|-|+. +.=+||.-..+-|-..+.|..||++|.|..-...
T Consensus 506 MAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~ 585 (913)
T PRK13103 506 MAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSR 585 (913)
T ss_pred CCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceE
Confidence 999999975 2347999999999999999999999999987655
Q ss_pred EE
Q psy7773 993 VL 994 (1281)
Q Consensus 993 V~ 994 (1281)
.|
T Consensus 586 f~ 587 (913)
T PRK13103 586 FY 587 (913)
T ss_pred EE
Confidence 54
No 176
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.14 E-value=1.1e-09 Score=136.73 Aligned_cols=116 Identities=16% Similarity=0.256 Sum_probs=103.7
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..|...|..+|... ...++||||......+.|...|...|+.+..+||.+++.+|..+++.|.++..+ +|++|.+
T Consensus 230 ~~k~~~L~~~L~~~--~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~---ILVATdv 304 (629)
T PRK11634 230 MRKNEALVRFLEAE--DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD---ILIATDV 304 (629)
T ss_pred hhHHHHHHHHHHhc--CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCC---EEEEcch
Confidence 35778888887542 346899999999999999999999999999999999999999999999986554 6889999
Q ss_pred cccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeE
Q psy7773 248 GGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEV 288 (1281)
Q Consensus 248 ~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V 288 (1281)
++.|||+..+++||+||+|.++..|.|++||++|.|..-.+
T Consensus 305 ~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~a 345 (629)
T PRK11634 305 AARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRA 345 (629)
T ss_pred HhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceE
Confidence 99999999999999999999999999999999999986543
No 177
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.13 E-value=3.4e-10 Score=138.94 Aligned_cols=128 Identities=14% Similarity=0.112 Sum_probs=111.3
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..+..++..++..+...+.+++||+..+...+.|...|...|+++..++|+++.++|..+++.|+++. ..|+|+|+..
T Consensus 327 ~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~--~~vLvaT~~~ 404 (501)
T PHA02558 327 TKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGK--GIIIVASYGV 404 (501)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCC--CeEEEEEcce
Confidence 34555666666666667889999999999999999999999999999999999999999999998643 4466777799
Q ss_pred cccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCe-EEEEEEEecc
Q psy7773 248 GGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNE-VRVLRLITVN 297 (1281)
Q Consensus 248 ~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~-V~v~~l~~~~ 297 (1281)
+|+|+|++..++||++.|+-+...+.|++||++|.|..+. |.||.|+-.-
T Consensus 405 l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~ 455 (501)
T PHA02558 405 FSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDL 455 (501)
T ss_pred eccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeeccc
Confidence 9999999999999999999999999999999999988765 9999988643
No 178
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.12 E-value=1.6e-08 Score=123.73 Aligned_cols=130 Identities=25% Similarity=0.357 Sum_probs=98.5
Q ss_pred ccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCC-
Q psy7773 542 VNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAP- 619 (1281)
Q Consensus 542 ~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p- 619 (1281)
.+..|+..|.. |+.....+.--.| ..+||+|||.-.+....++... .++++||+|+.+| .|-..-+.++..
T Consensus 79 ~G~~~ws~QR~---WakR~~rg~SFai-iAPTGvGKTTfg~~~sl~~a~k---gkr~yii~PT~~Lv~Q~~~kl~~~~e~ 151 (1187)
T COG1110 79 TGFRPWSAQRV---WAKRLVRGKSFAI-IAPTGVGKTTFGLLMSLYLAKK---GKRVYIIVPTTTLVRQVYERLKKFAED 151 (1187)
T ss_pred hCCCchHHHHH---HHHHHHcCCceEE-EcCCCCchhHHHHHHHHHHHhc---CCeEEEEecCHHHHHHHHHHHHHHHhh
Confidence 35588889987 6665555444445 4579999997666555555422 2799999998877 777777888773
Q ss_pred ----CCcEEEEeCC--HHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCcccc
Q psy7773 620 ----SANVVAYKGS--PLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMK 679 (1281)
Q Consensus 620 ----~~~~~~~~g~--~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~k 679 (1281)
...++ ||+. ...++.....+..++|+|+|||-.+|.++...|.+.+||+|+||-++-+.
T Consensus 152 ~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~L 216 (1187)
T COG1110 152 AGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAIL 216 (1187)
T ss_pred cCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHH
Confidence 33344 8887 44556667778889999999999999999999999999999999998654
No 179
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=99.10 E-value=3.9e-10 Score=126.61 Aligned_cols=222 Identities=19% Similarity=0.252 Sum_probs=129.4
Q ss_pred eEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCC---------CchHHHHHHHHHHHHhcCCccchhhhHHHHHhh
Q psy7773 784 VEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGE---------GGARALKNTIVQLRKLCNHPFMFQNIEEKYCQH 854 (1281)
Q Consensus 784 ~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~ 854 (1281)
.++.+.++|+..|+.+|+.+.......+.....+.... .....+...+.+|+.+|+||+|....- +..
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~--mPk- 80 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHY--MPK- 80 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT----S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCcccccccc--Ccc-
Confidence 46789999999999999998654432221111111111 223556677889999999999853210 000
Q ss_pred hcCCCccccCCccccccchHHHHHHHhhhh-----hhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHH
Q psy7773 855 IGQNNTVVSGPDIYRTSGKFELLDRILPKF-----KETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGE 929 (1281)
Q Consensus 855 ~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~-----~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~ 929 (1281)
..............||||.+|..++..+ ...+.++||.++...++++|+.+|...++.|-|++|..-..+...
T Consensus 81 --~ll~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~ 158 (297)
T PF11496_consen 81 --QLLLSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHK 158 (297)
T ss_dssp ---S-STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---
T ss_pred --ccccchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCcccc
Confidence 0001112234557899999999999999 677889999999999999999999999999999999866554443
Q ss_pred HH------------Hh-hcCCCCCeEEEEEeccccccc----cCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceE
Q psy7773 930 LL------------RK-FNEPESKYFIFLLSTRAGGLG----LNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVR 992 (1281)
Q Consensus 930 ~i------------~~-Fn~~~~~~~v~LlsT~agg~G----lNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~ 992 (1281)
.- .. -..+...+.|+|++|.-.... ++-...|.||-||+.+++....-..-|.+.-.+ +.+-
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~P 237 (297)
T PF11496_consen 159 VPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCP 237 (297)
T ss_dssp S----------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------S--
T ss_pred CCcccccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCc
Confidence 33 01 112345678888887755442 233357899999999998876555555443333 7899
Q ss_pred EEEEEeCCCHHHHHHHHHH
Q psy7773 993 VLRLITVNSVEERILAAAR 1011 (1281)
Q Consensus 993 V~rli~~~tiEe~I~~~~~ 1011 (1281)
|++||..+|+|--++..-.
T Consensus 238 iirLv~~nSiEHi~L~~~~ 256 (297)
T PF11496_consen 238 IIRLVPSNSIEHIELCFPK 256 (297)
T ss_dssp EEEEEETTSHHHHHHHHTT
T ss_pred EEEEeeCCCHHHHHHHccC
Confidence 9999999999988776544
No 180
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.09 E-value=6.1e-10 Score=139.72 Aligned_cols=114 Identities=19% Similarity=0.259 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccc
Q psy7773 170 KFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGG 249 (1281)
Q Consensus 170 K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~ 249 (1281)
++..|..++.. ..+.++||||..+...+.+...|...|+.+..+||+++.++|..+++.|..+... +|++|.+.|
T Consensus 223 ~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~---VLVaT~a~~ 297 (607)
T PRK11057 223 PLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQ---IVVATVAFG 297 (607)
T ss_pred hHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCC---EEEEechhh
Confidence 34444444432 3568899999999999999999999999999999999999999999999876544 578889999
Q ss_pred cCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeE
Q psy7773 250 LGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEV 288 (1281)
Q Consensus 250 ~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V 288 (1281)
.|||+..+++||+||+|.++..|.|++||++|.|....+
T Consensus 298 ~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ 336 (607)
T PRK11057 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEA 336 (607)
T ss_pred ccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceE
Confidence 999999999999999999999999999999999976553
No 181
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.09 E-value=4.6e-09 Score=136.30 Aligned_cols=141 Identities=23% Similarity=0.257 Sum_probs=97.4
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCCCCcEEEEeCCHHHHHHHHhhhc
Q psy7773 563 NNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAPSANVVAYKGSPLARRALQGRMK 641 (1281)
Q Consensus 563 ~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~ 641 (1281)
.+.+|++.|-+|+|||++++-++..+... .....++|||-..-| .|-..+|..+........ .......+...+.
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~~~-~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~---~~~s~~~Lk~~l~ 347 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLLEL-PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP---KAESTSELKELLE 347 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHHhc-cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc---cccCHHHHHHHHh
Confidence 34579999999999999998777777655 444567888886655 888999998875544433 1122223333333
Q ss_pred cCCccEEEechHHHhhccc----ccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEEeecCCCCCC
Q psy7773 642 NSKFNVLLTTYEFIIKDKS----VLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLTGTPLQNK 709 (1281)
Q Consensus 642 ~~~~~vvItTye~l~~~~~----~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllLTgTPl~n~ 709 (1281)
...-.|+|||-+.|..... ....-..-+||+|||||-- ...+.+.+...++...-+++||||+...
T Consensus 348 ~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ--~G~~~~~~~~~~~~a~~~gFTGTPi~~~ 417 (962)
T COG0610 348 DGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ--YGELAKLLKKALKKAIFIGFTGTPIFKE 417 (962)
T ss_pred cCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc--ccHHHHHHHHHhccceEEEeeCCccccc
Confidence 3456899999998865432 2234467799999999953 3344555666667778899999998643
No 182
>KOG0332|consensus
Probab=99.08 E-value=8.3e-10 Score=120.53 Aligned_cols=125 Identities=20% Similarity=0.349 Sum_probs=106.1
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..|+.+|.++...+ .-...||||+...++.+|...|...|..+..+||.+...+|..++++|+.+..+ +|++|.+
T Consensus 315 ~~K~~~l~~lyg~~--tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~k---VLitTnV 389 (477)
T KOG0332|consen 315 DDKYQALVNLYGLL--TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEK---VLITTNV 389 (477)
T ss_pred hhHHHHHHHHHhhh--hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcce---EEEEech
Confidence 56888888855432 225789999999999999999999999999999999999999999999998776 5899999
Q ss_pred cccCCCCCCCCEEEEeCCCC------CcchhhHHhHhhhhcCCCCeEEEEEEEe-ccch
Q psy7773 248 GGLGLNLQAADTVIIFDSDW------NPHQDLQAQDRAHRIGQKNEVRVLRLIT-VNSV 299 (1281)
Q Consensus 248 ~~~GlnL~~a~~vi~~d~~w------np~~~~Qa~gR~~R~Gq~~~V~v~~l~~-~~Ti 299 (1281)
+++||+.+..+.||+||+|- +|..|.+||||.+|.|.+- + +++|+- .++.
T Consensus 390 ~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG-~-a~n~v~~~~s~ 446 (477)
T KOG0332|consen 390 CARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKG-L-AINLVDDKDSM 446 (477)
T ss_pred hhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccc-e-EEEeecccCcH
Confidence 99999999999999999986 6789999999999999864 2 334544 3443
No 183
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.07 E-value=6.5e-10 Score=139.91 Aligned_cols=117 Identities=21% Similarity=0.214 Sum_probs=103.7
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..+...+..+|... .+.+.||||......+.+...|...|+++..+||+++.++|..+++.|..+... +|++|.+
T Consensus 209 ~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~---vlVaT~a 283 (591)
T TIGR01389 209 NNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVK---VMVATNA 283 (591)
T ss_pred CCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCc---EEEEech
Confidence 45667777776543 367899999999999999999999999999999999999999999999986543 5888899
Q ss_pred cccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEE
Q psy7773 248 GGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVR 289 (1281)
Q Consensus 248 ~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~ 289 (1281)
.|.|||+..+++||+|++|+|+..|.|++||++|.|+...+.
T Consensus 284 ~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 284 FGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred hhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEE
Confidence 999999999999999999999999999999999999765553
No 184
>KOG0947|consensus
Probab=99.06 E-value=8.1e-09 Score=124.62 Aligned_cols=372 Identities=17% Similarity=0.202 Sum_probs=207.7
Q ss_pred cccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHH-HHHHHHHHCC
Q psy7773 541 MVNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSN-WVLEFEKWAP 619 (1281)
Q Consensus 541 ~~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~-W~~E~~~~~p 619 (1281)
.+...|-.+|++++--|. .+-..++|..|.+|||++|=..|+... . ...+++-..|-..|+| =.++|+.-|.
T Consensus 293 ~~pFelD~FQk~Ai~~le----rg~SVFVAAHTSAGKTvVAEYAialaq-~--h~TR~iYTSPIKALSNQKfRDFk~tF~ 365 (1248)
T KOG0947|consen 293 IYPFELDTFQKEAIYHLE----RGDSVFVAAHTSAGKTVVAEYAIALAQ-K--HMTRTIYTSPIKALSNQKFRDFKETFG 365 (1248)
T ss_pred hCCCCccHHHHHHHHHHH----cCCeEEEEecCCCCcchHHHHHHHHHH-h--hccceEecchhhhhccchHHHHHHhcc
Confidence 345589999999986655 477889999999999999755443322 2 2247888999777754 5678888776
Q ss_pred CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhc----ccccccCceeEEEEeCCccccccc-hHHHHHHH-hhh
Q psy7773 620 SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKD----KSVLSKIQWKCMIIDEGHRMKNHH-CKLTQTLN-TFY 693 (1281)
Q Consensus 620 ~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~----~~~l~~~~w~~vIvDEaHr~kn~~-s~~~~~l~-~~~ 693 (1281)
+.. ++.|.-. ......++|+|-+.|++- .+.+.. ...||+||.|.+.+.. .-.|..+. .+.
T Consensus 366 Dvg--LlTGDvq---------inPeAsCLIMTTEILRsMLYrgadliRD--vE~VIFDEVHYiND~eRGvVWEEViIMlP 432 (1248)
T KOG0947|consen 366 DVG--LLTGDVQ---------INPEASCLIMTTEILRSMLYRGADLIRD--VEFVIFDEVHYINDVERGVVWEEVIIMLP 432 (1248)
T ss_pred ccc--eeeccee---------eCCCcceEeehHHHHHHHHhcccchhhc--cceEEEeeeeecccccccccceeeeeecc
Confidence 665 4445421 235678999999988653 344444 4559999999997543 23343332 222
Q ss_pred ccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhH
Q psy7773 694 NSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLK 773 (1281)
Q Consensus 694 ~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k 773 (1281)
+.-..++||||- .+..+|..|+++-...+-..+..
T Consensus 433 ~HV~~IlLSATV--------------------PN~~EFA~WIGRtK~K~IyViST------------------------- 467 (1248)
T KOG0947|consen 433 RHVNFILLSATV--------------------PNTLEFADWIGRTKQKTIYVIST------------------------- 467 (1248)
T ss_pred ccceEEEEeccC--------------------CChHHHHHHhhhccCceEEEEec-------------------------
Confidence 344568999993 23456777776532211111000
Q ss_pred HHHhhcCCCceEEEEEcC--CCH----HHHHHHHHHHh----c-------------ccc---cc-cCCc-cCCCC-----
Q psy7773 774 KEVESQLPEKVEYIIKCD--MSG----LQKLLYQHLHN----R-------------GIL---LT-DGSE-KGKTG----- 820 (1281)
Q Consensus 774 ~~v~~~lP~k~~~~v~~~--ls~----~q~~lY~~l~~----~-------------~~~---~~-~~~~-~~~~~----- 820 (1281)
..-|-..++.+++. |-+ -...++..+.. . ... .. .+.. ....+
T Consensus 468 ----~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~ 543 (1248)
T KOG0947|consen 468 ----SKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGS 543 (1248)
T ss_pred ----CCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccc
Confidence 01333444555544 111 01111111100 0 000 00 0000 00000
Q ss_pred -----CCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhcCCCccccCCccccccchHHH---HHHHhhhhhhcCCeEE
Q psy7773 821 -----EGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFEL---LDRILPKFKETKHRVL 892 (1281)
Q Consensus 821 -----~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~---L~~lL~~~~~~~~kvL 892 (1281)
..........+..|++-..-|.++-......|+.... ...+-++...+.|-++ |.+.+..++....
T Consensus 544 ~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~---~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR--- 617 (1248)
T KOG0947|consen 544 GIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYAD---YLTNLNLTDSKEKSEVHLFLSKAVARLKGEDR--- 617 (1248)
T ss_pred cccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHH---HHhccCcccchhHHHHHHHHHHHHHhcChhhc---
Confidence 0001246777888888877785554333333333221 1233445555555542 3344444433321
Q ss_pred EEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCC----
Q psy7773 893 MFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDS---- 968 (1281)
Q Consensus 893 IFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~---- 968 (1281)
+-.+.+.+ ... -.+|+ ...||+.-+--..-+---|..|= +. +|++|...+.|+|+++ .+|||-..
T Consensus 618 ---~LPQvl~m-~~l-l~RGi--aVHH~GlLPivKE~VE~LFqrGl--VK-VLFATETFAMGVNMPA-RtvVF~Sl~KhD 686 (1248)
T KOG0947|consen 618 ---NLPQVLSM-RSL-LLRGI--AVHHGGLLPIVKEVVELLFQRGL--VK-VLFATETFAMGVNMPA-RTVVFSSLRKHD 686 (1248)
T ss_pred ---cchHHHHH-HHH-Hhhcc--hhhcccchHHHHHHHHHHHhcCc--eE-EEeehhhhhhhcCCCc-eeEEeeehhhcc
Confidence 11222221 122 23343 34678877666666666788743 33 5999999999999975 55555332
Q ss_pred -----CCChhhhhhHhHhHHhhCCCCceEEEEEEe
Q psy7773 969 -----DWNPHQDLQAQDRAHRIGQKNEVRVLRLIT 998 (1281)
Q Consensus 969 -----~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~ 998 (1281)
.-+|..|.|.-|||+|-|--..-+|.-++.
T Consensus 687 G~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~ 721 (1248)
T KOG0947|consen 687 GNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCK 721 (1248)
T ss_pred CcceeecCChhHHhhhccccccccCcCceEEEEec
Confidence 358999999999999999766655554444
No 185
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=99.05 E-value=1.6e-09 Score=121.70 Aligned_cols=220 Identities=20% Similarity=0.280 Sum_probs=126.8
Q ss_pred EEEEEeCCCHHHHHHHHHHHHhhhhhccccccCCCC---------CCchHHHHHHHHHHHHHcCCCcCchhhHHHHhhhh
Q psy7773 82 EYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTG---------EGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHI 152 (1281)
Q Consensus 82 ~~~v~v~ls~~Q~~~Y~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~Lr~~~~hP~l~~~~~~~~~~~~ 152 (1281)
++.+.++|+..|+++|+.+.......+......... ......+...+.+|+.+|+||+|+.+ +.
T Consensus 5 ~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~Llvd-------H~ 77 (297)
T PF11496_consen 5 EYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVD-------HY 77 (297)
T ss_dssp EEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT---------TT
T ss_pred eEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCcccccc-------cc
Confidence 578899999999999999865433222111111111 12235677788999999999998643 11
Q ss_pred cCCCc--cccCCcccccCcHHHHHHHHHHHh-----hhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHH
Q psy7773 153 GQNNT--VVSGPDIYRTSGKFELLDRILPKF-----KETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRG 225 (1281)
Q Consensus 153 ~~~~~--~~~~~~~~~~s~K~~~L~~ll~~~-----~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~ 225 (1281)
..... ..........|+|+.+|..+|..+ ...+-++||.|+...++++|+.+|...++.|.++.|.....+..
T Consensus 78 mPk~ll~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~ 157 (297)
T PF11496_consen 78 MPKQLLLSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKH 157 (297)
T ss_dssp --S-S-STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S--
T ss_pred CccccccchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccc
Confidence 11111 111123456799999999999998 56678999999999999999999999999999999986544333
Q ss_pred HHH------------HHh-cCCCCCceEEEEeccccccC----CCCCCCCEEEEeCCCCCcchhhH-HhHhhhhcCCCCe
Q psy7773 226 ELL------------RKF-NEPESKYFIFLLSTRAGGLG----LNLQAADTVIIFDSDWNPHQDLQ-AQDRAHRIGQKNE 287 (1281)
Q Consensus 226 ~~i------------~~F-~~~~~~~~vll~st~~~~~G----lnL~~a~~vi~~d~~wnp~~~~Q-a~gR~~R~Gq~~~ 287 (1281)
..- ... ..+...+.|+|+++.-.... ++-...+.||-||+.+++....- .+-..+|-+ +.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~--~~ 235 (297)
T PF11496_consen 158 KVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN--RL 235 (297)
T ss_dssp -S----------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH---------S
T ss_pred cCCcccccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC--CC
Confidence 322 011 11223466777776654431 23335689999999999887554 444444443 78
Q ss_pred EEEEEEEeccchHHHHHHHHhhc
Q psy7773 288 VRVLRLITVNSVEERILAAARYK 310 (1281)
Q Consensus 288 V~v~~l~~~~Tiee~i~~~~~~K 310 (1281)
+.|++|++.+|+|..++..-...
T Consensus 236 ~PiirLv~~nSiEHi~L~~~~~~ 258 (297)
T PF11496_consen 236 CPIIRLVPSNSIEHIELCFPKSS 258 (297)
T ss_dssp --EEEEEETTSHHHHHHHHTTTS
T ss_pred CcEEEEeeCCCHHHHHHHccCcc
Confidence 99999999999999887666554
No 186
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.05 E-value=1.1e-07 Score=117.10 Aligned_cols=120 Identities=14% Similarity=0.194 Sum_probs=99.2
Q ss_pred ccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEecc
Q psy7773 870 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 949 (1281)
Q Consensus 870 ~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~ 949 (1281)
...|+..+..-+..+...|..|||.|.+....+.|..+|...|+++..|+.... ++...|-. ++|..+ .+.|+|.
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa-~AG~~G--aVTIATN 482 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA-KAGQKG--AITIATN 482 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH-hCCCCC--eEEEecc
Confidence 358999999988888889999999999999999999999999999999988633 33333322 444333 3689999
Q ss_pred ccccccCcccCC--------EEEEeCCCCChhhhhhHhHhHHhhCCCCceEEE
Q psy7773 950 AGGLGLNLQAAD--------TVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 994 (1281)
Q Consensus 950 agg~GlNL~~ad--------~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~ 994 (1281)
.+|+|.|+.-.. +||....+-|-..+.|..||++|.|..-..+.|
T Consensus 483 MAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 483 MAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred cccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 999999987544 899999999999999999999999998765554
No 187
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.03 E-value=1e-09 Score=138.71 Aligned_cols=105 Identities=16% Similarity=0.151 Sum_probs=96.1
Q ss_pred CCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEEeC
Q psy7773 185 KHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFD 264 (1281)
Q Consensus 185 ~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d 264 (1281)
+...||||..+...+.|...|...|+.+..+||+++..+|..+++.|..+... +|++|.+.|.|||+...++||+|+
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~---VLVATdAFGMGIDkPDVR~VIHyd 756 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEIN---IICATVAFGMGINKPDVRFVIHHS 756 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCc---EEEEechhhcCCCccCCcEEEEcC
Confidence 45789999999999999999999999999999999999999999999986544 578889999999999999999999
Q ss_pred CCCCcchhhHHhHhhhhcCCCCeEEEEE
Q psy7773 265 SDWNPHQDLQAQDRAHRIGQKNEVRVLR 292 (1281)
Q Consensus 265 ~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~ 292 (1281)
+|-++..|.|++||++|.|+.-.+..|+
T Consensus 757 lPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 757 LPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred CCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 9999999999999999999976655544
No 188
>PTZ00424 helicase 45; Provisional
Probab=99.03 E-value=1.1e-09 Score=131.89 Aligned_cols=124 Identities=23% Similarity=0.429 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccc
Q psy7773 170 KFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGG 249 (1281)
Q Consensus 170 K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~ 249 (1281)
+...+..++... ...++||||......+.+...|...|+.+..+||+++..+|..+++.|+++... +|++|.+++
T Consensus 254 ~~~~l~~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~---vLvaT~~l~ 328 (401)
T PTZ00424 254 KFDTLCDLYETL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTR---VLITTDLLA 328 (401)
T ss_pred HHHHHHHHHHhc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC---EEEEccccc
Confidence 444455544332 357899999999999999999999999999999999999999999999986544 578889999
Q ss_pred cCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchH
Q psy7773 250 LGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVE 300 (1281)
Q Consensus 250 ~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tie 300 (1281)
+|||+..+++||+||+|.++..+.|++||++|.|.. -.++.|++.+..+
T Consensus 329 ~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~--G~~i~l~~~~~~~ 377 (401)
T PTZ00424 329 RGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRK--GVAINFVTPDDIE 377 (401)
T ss_pred CCcCcccCCEEEEECCCCCHHHEeecccccccCCCC--ceEEEEEcHHHHH
Confidence 999999999999999999999999999999999864 4456667665443
No 189
>KOG0341|consensus
Probab=99.03 E-value=6.5e-10 Score=121.18 Aligned_cols=131 Identities=21% Similarity=0.308 Sum_probs=112.2
Q ss_pred cccCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEe
Q psy7773 165 YRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLS 244 (1281)
Q Consensus 165 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~s 244 (1281)
+..-+|+..|.++|+. ..-+|||||.-..-++.|.+||-..|+..+.|||+..+++|...++.|+.+..+ +|+.
T Consensus 404 VkqEaKiVylLeCLQK---T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKD---VLVA 477 (610)
T KOG0341|consen 404 VKQEAKIVYLLECLQK---TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKD---VLVA 477 (610)
T ss_pred HHhhhhhhhHHHHhcc---CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCc---eEEE
Confidence 3446788888877764 567899999999999999999999999999999999999999999999987665 5888
Q ss_pred ccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHH
Q psy7773 245 TRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERI 303 (1281)
Q Consensus 245 t~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i 303 (1281)
|++++.||+++...|||+||.|-.-..|.+||||.+|-|.+-- ...|+.+++-+..+
T Consensus 478 TDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~Gi--ATTfINK~~~esvL 534 (610)
T KOG0341|consen 478 TDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGI--ATTFINKNQEESVL 534 (610)
T ss_pred ecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcce--eeeeecccchHHHH
Confidence 9999999999999999999999999999999999999998643 33455666544433
No 190
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.03 E-value=1.3e-08 Score=128.24 Aligned_cols=372 Identities=17% Similarity=0.183 Sum_probs=202.7
Q ss_pred cccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCC
Q psy7773 541 MVNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAP 619 (1281)
Q Consensus 541 ~~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p 619 (1281)
-.+..|-|+|.+++.-+- .+.+.++|..||+|||+++-.++...+..+ .+++-..|...| .|=.++|..-+.
T Consensus 115 ~~~F~LD~fQ~~a~~~Le----r~esVlV~ApTssGKTvVaeyAi~~al~~~---qrviYTsPIKALsNQKyrdl~~~fg 187 (1041)
T COG4581 115 EYPFELDPFQQEAIAILE----RGESVLVCAPTSSGKTVVAEYAIALALRDG---QRVIYTSPIKALSNQKYRDLLAKFG 187 (1041)
T ss_pred hCCCCcCHHHHHHHHHHh----CCCcEEEEccCCCCcchHHHHHHHHHHHcC---CceEeccchhhhhhhHHHHHHHHhh
Confidence 356799999999986544 588999999999999999987777665332 358999996555 666677766664
Q ss_pred CC--cEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhc--ccccccCceeEEEEeCCccccccc-hHHHHHHHhhhc
Q psy7773 620 SA--NVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKD--KSVLSKIQWKCMIIDEGHRMKNHH-CKLTQTLNTFYN 694 (1281)
Q Consensus 620 ~~--~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~--~~~l~~~~w~~vIvDEaHr~kn~~-s~~~~~l~~~~~ 694 (1281)
++ .+-++.|+- .-+.+..++|+|-+.|++- .+.........||+||.|.|.... .-.|..+.-+.+
T Consensus 188 dv~~~vGL~TGDv---------~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP 258 (1041)
T COG4581 188 DVADMVGLMTGDV---------SINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLP 258 (1041)
T ss_pred hhhhhccceecce---------eeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcC
Confidence 32 234444432 2246677888888888652 222222356679999999997433 344544433323
Q ss_pred -cCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhH
Q psy7773 695 -SSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLK 773 (1281)
Q Consensus 695 -~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k 773 (1281)
+-+.++||||- ++..+|..|+..--......+
T Consensus 259 ~~v~~v~LSATv--------------------~N~~EF~~Wi~~~~~~~~~vv--------------------------- 291 (1041)
T COG4581 259 DHVRFVFLSATV--------------------PNAEEFAEWIQRVHSQPIHVV--------------------------- 291 (1041)
T ss_pred CCCcEEEEeCCC--------------------CCHHHHHHHHHhccCCCeEEE---------------------------
Confidence 34778999992 455677777764221100000
Q ss_pred HHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcc-----------cccc---------cC-----CccC----CCCCCch
Q psy7773 774 KEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRG-----------ILLT---------DG-----SEKG----KTGEGGA 824 (1281)
Q Consensus 774 ~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~-----------~~~~---------~~-----~~~~----~~~~~~~ 824 (1281)
+...-|...++.+++. +.+|.-+.... ..+. +. .... ..+..+.
T Consensus 292 --~t~~RpvPL~~~~~~~-----~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 364 (1041)
T COG4581 292 --STEHRPVPLEHFVYVG-----KGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGP 364 (1041)
T ss_pred --eecCCCCCeEEEEecC-----CceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccCCccccc
Confidence 0001233333333332 11111110000 0000 00 0000 0000111
Q ss_pred HHHHHHHHHHHHhcCCccchhhhHHHHHhhhcCCCccccCCccccccchHHHHHHHhhh----hhhcCCeEEEEechHHH
Q psy7773 825 RALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPK----FKETKHRVLMFCQMTQL 900 (1281)
Q Consensus 825 ~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~----~~~~~~kvLIFsq~~~~ 900 (1281)
.....++..|.+.--.|.+.-.....-|+.... .....+++...+|-..+..++.+ +.... --+++++..+
T Consensus 365 ~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~---~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed--~~lp~~~~~~ 439 (1041)
T COG4581 365 AGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQ---ILSTLDLVLTEEKERAIREIIDHAIGDLAEED--RELPLQILEI 439 (1041)
T ss_pred ccchHHHhhhhhhcCCceEEEEEchhhHHHHHH---HhcccccccCCcHHHHHHHHHHHHHhhcChhh--hcCcccHHHH
Confidence 111223333333333332221111222222111 12233445555554435555543 22211 1122333333
Q ss_pred HHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEe-----CC----CCC
Q psy7773 901 MTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIF-----DS----DWN 971 (1281)
Q Consensus 901 ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~-----D~----~wn 971 (1281)
...| + +|+. .-|+++=+.-+..+-..|..|--. +|++|...+.|+|.+. .+|++. |- +-+
T Consensus 440 ~~~L---~--RGia--vHH~GlLP~~K~~vE~Lfq~GLvk---vvFaTeT~s~GiNmPa-rtvv~~~l~K~dG~~~r~L~ 508 (1041)
T COG4581 440 SALL---L--RGIA--VHHAGLLPAIKELVEELFQEGLVK---VVFATETFAIGINMPA-RTVVFTSLSKFDGNGHRWLS 508 (1041)
T ss_pred HHHH---h--hhhh--hhccccchHHHHHHHHHHhcccee---EEeehhhhhhhcCCcc-cceeeeeeEEecCCceeecC
Confidence 3322 2 3333 457888888999999999986544 5999999999999875 444443 32 358
Q ss_pred hhhhhhHhHhHHhhCCCCceEEEEEEe
Q psy7773 972 PHQDLQAQDRAHRIGQKNEVRVLRLIT 998 (1281)
Q Consensus 972 p~~~~Qa~gR~~RiGQ~k~V~V~rli~ 998 (1281)
|..|.|--|||+|-|+...-+|.....
T Consensus 509 ~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 509 PGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred hhHHHHhhhhhccccccccceEEEecC
Confidence 999999999999999987755555443
No 191
>KOG0326|consensus
Probab=98.98 E-value=5.1e-10 Score=119.42 Aligned_cols=125 Identities=22% Similarity=0.343 Sum_probs=109.3
Q ss_pred ccccCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEE
Q psy7773 164 IYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLL 243 (1281)
Q Consensus 164 ~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~ 243 (1281)
.+..+-|+..|.-++..+.- ...||||+++..+++|+......|++|..+|..|.++.|..++.+|+++. |+. |+
T Consensus 303 fV~e~qKvhCLntLfskLqI--NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~--crn-LV 377 (459)
T KOG0326|consen 303 FVEERQKVHCLNTLFSKLQI--NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGK--CRN-LV 377 (459)
T ss_pred eechhhhhhhHHHHHHHhcc--cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccc--cce-ee
Confidence 35568899999988887643 46899999999999999999999999999999999999999999999854 445 67
Q ss_pred eccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEe
Q psy7773 244 STRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLIT 295 (1281)
Q Consensus 244 st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~ 295 (1281)
+|+..-.||+.|+.++||+||.|-|+..|..||||.+|.|-.- ...+|++
T Consensus 378 ctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlG--lAInLit 427 (459)
T KOG0326|consen 378 CTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLG--LAINLIT 427 (459)
T ss_pred ehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcc--eEEEEEe
Confidence 7799999999999999999999999999999999999999742 3344554
No 192
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.95 E-value=1.6e-08 Score=127.55 Aligned_cols=370 Identities=14% Similarity=0.150 Sum_probs=184.2
Q ss_pred CccEEEechHHHhhcc--cccccCceeEEEEeCCccccccchHHH--HHHHhhhccCcEEEeecCCCCC--ChhHHHHHH
Q psy7773 644 KFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNHHCKLT--QTLNTFYNSSHRVLLTGTPLQN--KLPELWALL 717 (1281)
Q Consensus 644 ~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~~s~~~--~~l~~~~~~~~rllLTgTPl~n--~~~el~~ll 717 (1281)
...|+++|...|..|. ..+..-.+..|||||||++.+..+..+ +..+...+..+..++|+.|-.- ....+-..+
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~vm 86 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETKM 86 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcccccchHHHHHHH
Confidence 3568899999888763 334444788999999999976554322 2222222456788999999763 344455555
Q ss_pred hhhcCCCCCChhHH----HHHhcc-cccCCcccccCCHHHHHHHHHHHHHhhhHHH--HHHhHHHHhh-cCC--------
Q psy7773 718 NFLLPSIFKSCSTF----EQWFNA-PFATTGEKVELNEEETILIIRRLHKVLRPFL--LRRLKKEVES-QLP-------- 781 (1281)
Q Consensus 718 ~fl~p~~~~~~~~f----~~~f~~-~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~--lRR~k~~v~~-~lP-------- 781 (1281)
.-|.-....-+..| ...+.. +.....-.+.++.. ...+-..|..++...+ |+|....+.. ++.
T Consensus 87 k~L~i~~v~l~prf~~~V~~~l~~~~~~V~ei~V~l~~~-m~~Iq~~l~~~l~~~l~eLkr~n~~ld~~dl~~en~l~~~ 165 (814)
T TIGR00596 87 RNLFLRHVYLWPRFHVEVASSLEKHKAEVIELHVSLTDS-MSQIQSAILECLNKCIAELKRKNPELDMEDWNLENALTKS 165 (814)
T ss_pred HHhCcCeEEEeCCCchHHHHHhccCCCeEEEEEeCCCHH-HHHHHHHHHHHHHHHHHHHHHhCCCCCHHHhHHhhhhhhh
Confidence 54433332222222 222221 01111112233332 1122233344443332 2222111000 000
Q ss_pred -----CceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHH-HHHH--------hcCCccchhhh
Q psy7773 782 -----EKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIV-QLRK--------LCNHPFMFQNI 847 (1281)
Q Consensus 782 -----~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~Lrk--------~~~hp~l~~~~ 847 (1281)
...-..+|-.++...+.+...+..-...+. .....+...+...+. .++. ..+.||++...
T Consensus 166 F~~~i~~qL~~~wh~~~~~tkqlv~Dl~~Lr~ll~------~L~t~D~vtF~~yL~~~l~~~~~~~~sk~~~S~Wl~~da 239 (814)
T TIGR00596 166 FDRIIRRQLDPNWHRLSYKTKQLVGDLKILRHLLQ------SLVTYDAVSFLGLLDTSLRANKPAVSRKYSESPWLLLDA 239 (814)
T ss_pred HHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHH------HHHhcCHHHHHHHHHHHHHhccccccccccCCcchhhHH
Confidence 000001233333333333332211100000 000122333444443 2221 12456766544
Q ss_pred HHHHHhh-----hcCCCcc-ccCCccccccchHHHHHHHhhhhhhc---------CCeEEEEechHHHHHHHHHHHHHCC
Q psy7773 848 EEKYCQH-----IGQNNTV-VSGPDIYRTSGKFELLDRILPKFKET---------KHRVLMFCQMTQLMTILEDYFIWRD 912 (1281)
Q Consensus 848 ~~~~~~~-----~~~~~~~-~~~~~~~~~s~K~~~L~~lL~~~~~~---------~~kvLIFsq~~~~ld~L~~~L~~~g 912 (1281)
...+... +...... ..........||+..|.++|...... +.+|||||++..++..|.++|...+
T Consensus 240 a~~lf~~ak~Rvy~~~~~~~~~~e~~lEe~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~~~ 319 (814)
T TIGR00596 240 AQLIFSYARQRVYYEGEGPNMKNEPVLEENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTTSN 319 (814)
T ss_pred HHHHHHHHHHHHhccccccccccccCcccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHhcc
Confidence 3332221 1100000 01112235799999999999775433 5689999999999999999996622
Q ss_pred C-----cEE--------EEeCCCCh---------------------------------HHH---HHHHHhhcCCCCC-eE
Q psy7773 913 F-----SYL--------RLDGTTKS---------------------------------EDR---GELLRKFNEPESK-YF 942 (1281)
Q Consensus 913 ~-----~~~--------~l~G~~~~---------------------------------~~R---~~~i~~Fn~~~~~-~~ 942 (1281)
+ +++ ...|..+. ..| +..+..|+.++.+ ..
T Consensus 320 ~~~~~~~fm~~~l~~y~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~krrr~rG~s~~~~~~~r~~~~~~~~ 399 (814)
T TIGR00596 320 KKRGSRAFLLNKLRWYRKWREETSKLAKEVQSQDTFPENASSNVNKTFRKEQVPTKRRRVRGGSEVAVEKLRNANTNDMQ 399 (814)
T ss_pred ccccHHHHHHHHHHHHHhhhhhhhhhhHhhhhccccccccccccccccccccccccccccccchhHHHhhhccccccccc
Confidence 2 111 00011100 001 1135666543322 00
Q ss_pred E-----EE-----------------------EeccccccccCccc----------------------C----------CE
Q psy7773 943 I-----FL-----------------------LSTRAGGLGLNLQA----------------------A----------DT 962 (1281)
Q Consensus 943 v-----~L-----------------------lsT~agg~GlNL~~----------------------a----------d~ 962 (1281)
. .+ ++|..+.+|+|... + +.
T Consensus 400 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~L~e~~P~~ 479 (814)
T TIGR00596 400 HFEEDHELEEEGDDLEDGPAQEINAANDSKIFEIIDEENDIDIYSGAEFDNLPQHITHFLWGERDEYVLRCSLEELMPRY 479 (814)
T ss_pred ccchhhhhhhhhhhhccccccccccccccccccccccccccccchhhccccccceeeeecccccchhhHHHHHhhhCCCE
Confidence 0 02 55777778998886 4 89
Q ss_pred EEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHHHHHH-HHHHHHHHhc
Q psy7773 963 VIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYK-LNMDEKVIQA 1023 (1281)
Q Consensus 963 VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~~~~K-~~l~~~vi~~ 1023 (1281)
||+|||+-....-+|. -|++|.|. +++||.|++.+|+||.-|-....| ..++...|..
T Consensus 480 VImYEP~~sfIR~IEv-yra~r~~r--~~rVyfL~y~~S~EEq~yl~sirrEK~AFe~LIre 538 (814)
T TIGR00596 480 VIMYEPDISFIRQLEV-YKASRPLR--PLRVYFLYYGGSIEEQRYLTSLRREKDAFTKLIRE 538 (814)
T ss_pred EEEECCChHHHHHHHH-HHccCCCC--CcEEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888888871 23333333 389999999999999877655444 3445555543
No 193
>KOG0349|consensus
Probab=98.94 E-value=6.3e-09 Score=114.99 Aligned_cols=97 Identities=22% Similarity=0.337 Sum_probs=88.9
Q ss_pred cCCeEEEEechHHHHHHHHHHHHHCC---CcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEE
Q psy7773 887 TKHRVLMFCQMTQLMTILEDYFIWRD---FSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTV 963 (1281)
Q Consensus 887 ~~~kvLIFsq~~~~ld~L~~~L~~~g---~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~V 963 (1281)
.-.|+||||....-.|-|+.++..+| |.++-++|..++.+|.+.++.|...+-. |||||+++++||++++.-.|
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvk---flictdvaargldi~g~p~~ 580 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVK---FLICTDVAARGLDITGLPFM 580 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeE---EEEEehhhhccccccCCceE
Confidence 34679999999999999999998874 7889999999999999999999986665 89999999999999999999
Q ss_pred EEeCCCCChhhhhhHhHhHHhhC
Q psy7773 964 IIFDSDWNPHQDLQAQDRAHRIG 986 (1281)
Q Consensus 964 I~~D~~wnp~~~~Qa~gR~~RiG 986 (1281)
|+..+|-.-.+|.+||||++|.-
T Consensus 581 invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 581 INVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred EEEecCcccchhhhhhhccchhh
Confidence 99999999999999999988753
No 194
>KOG0340|consensus
Probab=98.94 E-value=6.7e-09 Score=112.99 Aligned_cols=118 Identities=19% Similarity=0.314 Sum_probs=107.5
Q ss_pred cCcHHHHHHHHHHHhhh-CCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEec
Q psy7773 167 TSGKFELLDRILPKFKE-TKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLST 245 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~~-~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st 245 (1281)
...|-.+|..+|....+ ....++||.+.+.+...|...|...++..+.+|+-+++.+|...+.+|+.+..+ +|++|
T Consensus 235 ~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~---iliaT 311 (442)
T KOG0340|consen 235 IDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAAR---ILIAT 311 (442)
T ss_pred hhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCcc---EEEEe
Confidence 45788899999998776 567899999999999999999999999999999999999999999999975443 58888
Q ss_pred cccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCe
Q psy7773 246 RAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNE 287 (1281)
Q Consensus 246 ~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~ 287 (1281)
++++.||+....+.||+||.|-.|..|.+|+||..|.|..-.
T Consensus 312 DVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~ 353 (442)
T KOG0340|consen 312 DVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGM 353 (442)
T ss_pred chhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcc
Confidence 999999999999999999999999999999999999988654
No 195
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.93 E-value=1.3e-08 Score=111.85 Aligned_cols=238 Identities=16% Similarity=0.176 Sum_probs=138.3
Q ss_pred ccccCcccHHHHHHHHHHHHhhcC------CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC-CccHHHHHH
Q psy7773 540 IMVNGKLKEYQIKGLEWMVSLYNN------NLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVP-LSTLSNWVL 612 (1281)
Q Consensus 540 ~~~~~~L~~yQ~~gv~~l~~~~~~------~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P-~s~l~~W~~ 612 (1281)
....+.|..-|+++|-+....... ..|.+|+|.+|.||.-|+.++|...+.++ .. +.|.|.. ..+...-.+
T Consensus 32 ~~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G-r~-r~vwvS~s~dL~~Da~R 109 (303)
T PF13872_consen 32 VIDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG-RK-RAVWVSVSNDLKYDAER 109 (303)
T ss_pred HHhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-CC-ceEEEECChhhhhHHHH
Confidence 345788999999999999876653 45669999999999999999998876443 33 4555555 555555556
Q ss_pred HHHHHCCCCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc-------cccccC-ce------eEEEEeCCccc
Q psy7773 613 EFEKWAPSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK-------SVLSKI-QW------KCMIIDEGHRM 678 (1281)
Q Consensus 613 E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~-------~~l~~~-~w------~~vIvDEaHr~ 678 (1281)
.+...... .+.+..-.. .........+..|+.+||..|.... ..|..+ .| .+||+||||++
T Consensus 110 Dl~DIG~~-~i~v~~l~~----~~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~a 184 (303)
T PF13872_consen 110 DLRDIGAD-NIPVHPLNK----FKYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKA 184 (303)
T ss_pred HHHHhCCC-cccceechh----hccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhc
Confidence 66544321 111111111 0001112345679999999998762 223322 33 48999999999
Q ss_pred cccch------HHHHH---HHhhhccCcEEEeecCCCCCChhHHHHHHh--hhcC-CCCCChhHHHHHhcccccCCcccc
Q psy7773 679 KNHHC------KLTQT---LNTFYNSSHRVLLTGTPLQNKLPELWALLN--FLLP-SIFKSCSTFEQWFNAPFATTGEKV 746 (1281)
Q Consensus 679 kn~~s------~~~~~---l~~~~~~~~rllLTgTPl~n~~~el~~ll~--fl~p-~~~~~~~~f~~~f~~~~~~~~~~~ 746 (1281)
||..+ +...+ |...++..+.+..|||.... +..+..+-. +-.+ ..|.+..+|.+-+..- |
T Consensus 185 kn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase-p~NmaYm~RLGLWG~gtpf~~~~~f~~a~~~g----G--- 256 (303)
T PF13872_consen 185 KNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE-PRNMAYMSRLGLWGPGTPFPDFDDFLEAMEKG----G--- 256 (303)
T ss_pred CCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC-CceeeeeeeccccCCCCCCCCHHHHHHHHHhc----C---
Confidence 98755 33333 33334667789999998742 222211111 1111 2355556664433221 1
Q ss_pred cCCHHHHHHHHHHHHHhhhHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHH
Q psy7773 747 ELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQH 802 (1281)
Q Consensus 747 ~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~ 802 (1281)
.....++..=.+ .+..+++|.. .+-.....++.++|++.|..+|+.
T Consensus 257 ----v~amE~vA~dlK-a~G~yiaR~L-----Sf~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 257 ----VGAMEMVAMDLK-ARGMYIARQL-----SFEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred ----chHHHHHHHHHH-hcchheeeec-----ccCCceEEEEEecCCHHHHHHhcC
Confidence 001111111111 1222334322 355677889999999999999974
No 196
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.93 E-value=2.4e-08 Score=120.24 Aligned_cols=211 Identities=18% Similarity=0.205 Sum_probs=158.6
Q ss_pred HHHHHHHhhhhHHhhchhhhhh--cCCCceEEEEEeCCCHHHHHHHHHHHHhhhhhccccccCCCCCCchHHHHHHHHHH
Q psy7773 54 IRRLHKVLRPFLLRRLKKEVES--QLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQL 131 (1281)
Q Consensus 54 ~~~L~~~l~~~~lRR~k~dv~~--~LP~k~~~~v~v~ls~~Q~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 131 (1281)
...+...+.+.+......+... .|.|.....+.+.++..+...|................ .......
T Consensus 191 ~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 259 (442)
T COG1061 191 IGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT-----------LRAENEA 259 (442)
T ss_pred hhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh-----------hhHHHHH
Confidence 3456666666666666555533 69999999999999999999998765432211110000 0001111
Q ss_pred HHHcCCCcCchhhHHHHhhhhcCCCccccCCcccccCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCc
Q psy7773 132 RKLCNHPFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFS 211 (1281)
Q Consensus 132 r~~~~hP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~ 211 (1281)
+.++ .....|+..+..++.... .+.+++||+........+...|...|+
T Consensus 260 ~~~~-----------------------------~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~- 308 (442)
T COG1061 260 RRIA-----------------------------IASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI- 308 (442)
T ss_pred HHHh-----------------------------hccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-
Confidence 1111 223567888888887655 788999999999999999999998888
Q ss_pred EEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhc-CCCCe--E
Q psy7773 212 YLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRI-GQKNE--V 288 (1281)
Q Consensus 212 ~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~-Gq~~~--V 288 (1281)
+..++|.++..+|..+++.|..+. + .+|++++++.+|++++.|+++|+..+.=++..+.|++||+.|. ..... +
T Consensus 309 ~~~it~~t~~~eR~~il~~fr~g~--~-~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~ 385 (442)
T COG1061 309 VEAITGETPKEEREAILERFRTGG--I-KVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLA 385 (442)
T ss_pred eEEEECCCCHHHHHHHHHHHHcCC--C-CEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEE
Confidence 899999999999999999999865 3 3588889999999999999999999999999999999999994 33443 7
Q ss_pred EEEEEEeccchHHHHHHHHhh
Q psy7773 289 RVLRLITVNSVEERILAAARY 309 (1281)
Q Consensus 289 ~v~~l~~~~Tiee~i~~~~~~ 309 (1281)
..|-++..++.+..+......
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 386 LDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred EEEEeecCcccccchhhhhhh
Confidence 888888888888776554443
No 197
>KOG0336|consensus
Probab=98.91 E-value=3.3e-09 Score=116.58 Aligned_cols=117 Identities=21% Similarity=0.336 Sum_probs=105.3
Q ss_pred cCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecc
Q psy7773 167 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 246 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~ 246 (1281)
.+.|+..+..++..+ ....|||||+....+++.|..-|...||..-.+||.-.+.+|+..++.|..+. ++ +|+.|+
T Consensus 448 d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~--vr-ILvaTD 523 (629)
T KOG0336|consen 448 DSEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGE--VR-ILVATD 523 (629)
T ss_pred cHHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCc--eE-EEEEec
Confidence 467888777777765 45679999999999999999999999999999999999999999999999754 44 588889
Q ss_pred ccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCe
Q psy7773 247 AGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNE 287 (1281)
Q Consensus 247 ~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~ 287 (1281)
.++.||++....||++||.|-|-..|.+|+||.+|.|.+-.
T Consensus 524 laSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~ 564 (629)
T KOG0336|consen 524 LASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGT 564 (629)
T ss_pred hhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcc
Confidence 99999999999999999999999999999999999998754
No 198
>KOG0342|consensus
Probab=98.90 E-value=1e-08 Score=116.34 Aligned_cols=146 Identities=23% Similarity=0.339 Sum_probs=116.5
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..++.+|..+|+..... .||+|||....+..++...|....+++..|||+.++..|..+...|.+..+. +|+||++
T Consensus 314 ~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesg---IL~cTDV 389 (543)
T KOG0342|consen 314 DSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESG---ILVCTDV 389 (543)
T ss_pred cchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccc---eEEecch
Confidence 44567778888765444 8999999999999999999999999999999999999999999999987775 7899999
Q ss_pred cccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhccccchhhhhccc
Q psy7773 248 GGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDEKEYHRNN 322 (1281)
Q Consensus 248 ~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~~l~~~~~~~~~ 322 (1281)
++.|+|+...+.||-||||-+|..|++|+||.+|-|-.-. -+-++++ +|.=|-+...|.-+....+....
T Consensus 390 aARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~--alL~l~p---~El~Flr~LK~lpl~~~e~~~~~ 459 (543)
T KOG0342|consen 390 AARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGK--ALLLLAP---WELGFLRYLKKLPLEEFEFPPLK 459 (543)
T ss_pred hhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCce--EEEEeCh---hHHHHHHHHhhCCCcccCCCCCC
Confidence 9999999999999999999999999999999999776543 2233333 33333333335555444444443
No 199
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=98.89 E-value=8.3e-08 Score=120.14 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=102.4
Q ss_pred cCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecc
Q psy7773 167 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 246 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~ 246 (1281)
...|+.+|...+......+.++||||......+.|...|...|+++..+||.+...++..+...|.. +. ++++|.
T Consensus 410 ~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~--g~---VlIATd 484 (790)
T PRK09200 410 LDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK--GA---VTVATN 484 (790)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC--Ce---EEEEcc
Confidence 3578999988888776788999999999999999999999999999999999988887777777654 22 688999
Q ss_pred ccccCCCC---CCCC-----EEEEeCCCCCcchhhHHhHhhhhcCCCCeE
Q psy7773 247 AGGLGLNL---QAAD-----TVIIFDSDWNPHQDLQAQDRAHRIGQKNEV 288 (1281)
Q Consensus 247 ~~~~GlnL---~~a~-----~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V 288 (1281)
.+|.|+++ ...+ +||++|+|=|+..+.|++||++|.|..-.+
T Consensus 485 mAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s 534 (790)
T PRK09200 485 MAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSS 534 (790)
T ss_pred chhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeE
Confidence 99999999 4666 999999999999999999999999987543
No 200
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=98.88 E-value=8.3e-09 Score=131.51 Aligned_cols=124 Identities=20% Similarity=0.176 Sum_probs=102.7
Q ss_pred HHHHhhhCCCeEEEEeccHHHHHHHHHHHHhC--------CCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecccc
Q psy7773 177 ILPKFKETKHRVLMFCQMTQLMTILEDYFIWR--------DFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAG 248 (1281)
Q Consensus 177 ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~--------g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~ 248 (1281)
+|..+...+.++||||+.+...+.|...|... +..+..++|++++++|..+.+.|.++.-. +|++|.++
T Consensus 263 ~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~---vLVaTd~l 339 (742)
T TIGR03817 263 LLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELL---GVATTNAL 339 (742)
T ss_pred HHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCce---EEEECchH
Confidence 34444445789999999999999998887653 56788899999999999999999986543 58999999
Q ss_pred ccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHH
Q psy7773 249 GLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILA 305 (1281)
Q Consensus 249 ~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~ 305 (1281)
+.|||+...++||+|+.|-+...+.||+||++|.|+.- .++.++..+..|..++.
T Consensus 340 erGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g--~ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 340 ELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGA--LVVLVARDDPLDTYLVH 394 (742)
T ss_pred hccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCc--EEEEEeCCChHHHHHHh
Confidence 99999999999999999999999999999999999754 34445555667776544
No 201
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=98.85 E-value=8.3e-08 Score=120.88 Aligned_cols=123 Identities=21% Similarity=0.209 Sum_probs=106.0
Q ss_pred cCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecc
Q psy7773 167 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 246 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~ 246 (1281)
..+++..|...|..+...+.++||||......+.|...|...|+++..+||+++..+|..++..|..+. +. +|++|.
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~--i~-vlV~t~ 504 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE--FD-VLVGIN 504 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCC--ce-EEEEeC
Confidence 356788888888888888999999999999999999999999999999999999999999999998754 33 577889
Q ss_pred ccccCCCCCCCCEEEEeCC-----CCCcchhhHHhHhhhhcCCCCeEEEEEEEe
Q psy7773 247 AGGLGLNLQAADTVIIFDS-----DWNPHQDLQAQDRAHRIGQKNEVRVLRLIT 295 (1281)
Q Consensus 247 ~~~~GlnL~~a~~vi~~d~-----~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~ 295 (1281)
.++.|+++..++.||++|. |-++..+.|++||++|- . .-.++.|+.
T Consensus 505 ~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~ 555 (652)
T PRK05298 505 LLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYAD 555 (652)
T ss_pred HHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEec
Confidence 9999999999999999996 45888999999999994 3 233455555
No 202
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.85 E-value=1.5e-07 Score=116.43 Aligned_cols=384 Identities=19% Similarity=0.180 Sum_probs=208.2
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHCCCCcE
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWAPSANV 623 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~p~~~~ 623 (1281)
.|-+-|..++.-+..........+|...||+|||-+.+.+|...+..+ +-+||+||- ++..|-...|...|+ .++
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G---kqvLvLVPEI~Ltpq~~~rf~~rFg-~~v 273 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG---KQVLVLVPEIALTPQLLARFKARFG-AKV 273 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC---CEEEEEeccccchHHHHHHHHHHhC-CCh
Confidence 678899999998887653334568899999999999999998887443 589999995 778999999988885 777
Q ss_pred EEEeCCHHH--HHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccc--cccc-----hHHHHHHHhhhc
Q psy7773 624 VAYKGSPLA--RRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRM--KNHH-----CKLTQTLNTFYN 694 (1281)
Q Consensus 624 ~~~~g~~~~--r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~--kn~~-----s~~~~~l~~~~~ 694 (1281)
.+++..-.. |.........+...|||-|...+.-... +..+|||||=|-- |-.+ ..-...+.....
T Consensus 274 ~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf~-----~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~ 348 (730)
T COG1198 274 AVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLPFK-----NLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKE 348 (730)
T ss_pred hhhcccCChHHHHHHHHHHhcCCceEEEEechhhcCchh-----hccEEEEeccccccccCCcCCCcCHHHHHHHHHHHh
Confidence 777765333 3333334556888999999887744333 4578999999974 3222 222222222223
Q ss_pred cCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHH
Q psy7773 695 SSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKK 774 (1281)
Q Consensus 695 ~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~ 774 (1281)
.-..+|=||||- ++.++.. ... .+. .-.+.+.++.........++...+... ....+.+.+
T Consensus 349 ~~pvvLgSATPS---LES~~~~---~~g-~y~-~~~L~~R~~~a~~p~v~iiDmr~e~~~-----~~~~lS~~L------ 409 (730)
T COG1198 349 NAPVVLGSATPS---LESYANA---ESG-KYK-LLRLTNRAGRARLPRVEIIDMRKEPLE-----TGRSLSPAL------ 409 (730)
T ss_pred CCCEEEecCCCC---HHHHHhh---hcC-ceE-EEEccccccccCCCcceEEeccccccc-----cCccCCHHH------
Confidence 455678899993 3222222 110 000 000011111000000000000000000 000011222
Q ss_pred HHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhh
Q psy7773 775 EVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQH 854 (1281)
Q Consensus 775 ~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~ 854 (1281)
...+.+.+......++--..++- .. + -+.+.|.|.+-.+.++..+.-+
T Consensus 410 ---------------------l~~i~~~l~~geQ~llflnRRGy---s~---~-----l~C~~Cg~v~~Cp~Cd~~lt~H 457 (730)
T COG1198 410 ---------------------LEAIRKTLERGEQVLLFLNRRGY---AP---L-----LLCRDCGYIAECPNCDSPLTLH 457 (730)
T ss_pred ---------------------HHHHHHHHhcCCeEEEEEccCCc---cc---e-----eecccCCCcccCCCCCcceEEe
Confidence 22333333222222111111110 00 0 0233444433222111111000
Q ss_pred hcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEech-H-HHHHHHHHHHHHCCCcEEEEeCCCChHH--HHHH
Q psy7773 855 IGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQM-T-QLMTILEDYFIWRDFSYLRLDGTTKSED--RGEL 930 (1281)
Q Consensus 855 ~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~-~-~~ld~L~~~L~~~g~~~~~l~G~~~~~~--R~~~ 930 (1281)
... +.-....+|.-.- +-..+.+-|...|+++-. + .+.+.|..+| -+.++.++|+.++... -..+
T Consensus 458 ~~~------~~L~CH~Cg~~~~---~p~~Cp~Cgs~~L~~~G~GterieeeL~~~F--P~~rv~r~d~Dtt~~k~~~~~~ 526 (730)
T COG1198 458 KAT------GQLRCHYCGYQEP---IPQSCPECGSEHLRAVGPGTERIEEELKRLF--PGARIIRIDSDTTRRKGALEDL 526 (730)
T ss_pred cCC------CeeEeCCCCCCCC---CCCCCCCCCCCeeEEecccHHHHHHHHHHHC--CCCcEEEEccccccchhhHHHH
Confidence 000 0000001111100 011122223334555432 2 2333444443 3788999999987644 4678
Q ss_pred HHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCC------------ChhhhhhHhHhHHhhCCCCceEEEEEEe
Q psy7773 931 LRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDW------------NPHQDLQAQDRAHRIGQKNEVRVLRLIT 998 (1281)
Q Consensus 931 i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~w------------np~~~~Qa~gR~~RiGQ~k~V~V~rli~ 998 (1281)
+..|.+++.+ +||.|....-|+|++....|.++|.|- ..+.+.|..|||+|-+-.-.|.|-.+-.
T Consensus 527 l~~~~~ge~d---ILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P 603 (730)
T COG1198 527 LDQFANGEAD---ILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNP 603 (730)
T ss_pred HHHHhCCCCC---eeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCC
Confidence 9999998877 699999999999999999999888763 2367889999999998777777766665
Q ss_pred CCCH
Q psy7773 999 VNSV 1002 (1281)
Q Consensus 999 ~~ti 1002 (1281)
...+
T Consensus 604 ~hp~ 607 (730)
T COG1198 604 DHPA 607 (730)
T ss_pred CcHH
Confidence 5443
No 203
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=98.85 E-value=1.2e-07 Score=116.69 Aligned_cols=118 Identities=15% Similarity=0.145 Sum_probs=105.0
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..|+.++...+..+...|..|||||.+....+.|...|...|+++..++|. ..+|+..+-.|..+.+. ++++|..
T Consensus 388 ~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~---VtIATnm 462 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGA---VTIATNM 462 (745)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCce---EEEEecc
Confidence 368888888887778899999999999999999999999999999999998 67899999999875554 6888999
Q ss_pred cccCCCCCC-------CCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEE
Q psy7773 248 GGLGLNLQA-------ADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRV 290 (1281)
Q Consensus 248 ~~~GlnL~~-------a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v 290 (1281)
+|+|+++.. .-|||++++|-|+..+.|+.||++|.|..-....
T Consensus 463 AgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~ 512 (745)
T TIGR00963 463 AGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512 (745)
T ss_pred ccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEE
Confidence 999999887 6699999999999999999999999999754433
No 204
>KOG0335|consensus
Probab=98.85 E-value=1e-08 Score=118.59 Aligned_cols=125 Identities=17% Similarity=0.249 Sum_probs=109.9
Q ss_pred cccCcHHHHHHHHHHHhhhC--C-----CeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCC
Q psy7773 165 YRTSGKFELLDRILPKFKET--K-----HRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESK 237 (1281)
Q Consensus 165 ~~~s~K~~~L~~ll~~~~~~--~-----~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~ 237 (1281)
+..+.|...|.++|.....+ . ++++||++.....+.|..+|...|+++..|||..++.+|.+.++.|.++...
T Consensus 310 V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~p 389 (482)
T KOG0335|consen 310 VNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAP 389 (482)
T ss_pred ecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcc
Confidence 44578888888888765422 2 4899999999999999999999999999999999999999999999986554
Q ss_pred ceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEE
Q psy7773 238 YFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLR 292 (1281)
Q Consensus 238 ~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~ 292 (1281)
+|++|.+++.|||.....|||+||+|-+-..|.+||||.+|.|+.-..+.+.
T Consensus 390 ---vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~ 441 (482)
T KOG0335|consen 390 ---VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFF 441 (482)
T ss_pred ---eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEe
Confidence 5788899999999999999999999999999999999999999976644443
No 205
>KOG0345|consensus
Probab=98.85 E-value=1.3e-08 Score=114.75 Aligned_cols=120 Identities=18% Similarity=0.339 Sum_probs=102.7
Q ss_pred cCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEe
Q psy7773 167 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR--DFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLS 244 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~--g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~s 244 (1281)
..-|+..|..+|.. ...+|+|||-......++....|... ++.++.+||.++...|..++..|.+..+. +|+|
T Consensus 239 a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~---vl~~ 313 (567)
T KOG0345|consen 239 ADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNG---VLFC 313 (567)
T ss_pred HHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCc---eEEe
Confidence 34688888888866 34589999988888888888777654 77899999999999999999999885444 6889
Q ss_pred ccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEE
Q psy7773 245 TRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 291 (1281)
Q Consensus 245 t~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~ 291 (1281)
|++++.||++...+.||.||||-+|+.+.+|.||..|.|..-...|+
T Consensus 314 TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivf 360 (567)
T KOG0345|consen 314 TDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVF 360 (567)
T ss_pred ehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEE
Confidence 99999999999999999999999999999999999999987554433
No 206
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=98.84 E-value=2.4e-08 Score=118.23 Aligned_cols=122 Identities=20% Similarity=0.269 Sum_probs=97.4
Q ss_pred cHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCC--cEEEecCCCCHHHHHH----HHHHhcCCCCCceEEE
Q psy7773 169 GKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDF--SYLRLDGTTKSEDRGE----LLRKFNEPESKYFIFL 242 (1281)
Q Consensus 169 ~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~--~~~~~~g~~~~~~R~~----~i~~F~~~~~~~~vll 242 (1281)
.|...+..++..+ ..+.++||||+.....+.+...|...+. .+..+||+++..+|.. ++..|.++... +|
T Consensus 207 ~~~~~l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~---il 282 (358)
T TIGR01587 207 GEISSLERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKF---VI 282 (358)
T ss_pred cCHHHHHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCe---EE
Confidence 5666777776443 4568999999999999999999988876 4899999999999876 48899875433 58
Q ss_pred EeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCC----eEEEEEEEecc
Q psy7773 243 LSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKN----EVRVLRLITVN 297 (1281)
Q Consensus 243 ~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~----~V~v~~l~~~~ 297 (1281)
++|.+++.|+|+. +++||+++.| +..+.||+||++|.|... .|.||.....+
T Consensus 283 vaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 283 VATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred EECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 8899999999994 7888888776 889999999999999764 35555544433
No 207
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=98.81 E-value=2.5e-08 Score=122.08 Aligned_cols=116 Identities=13% Similarity=0.149 Sum_probs=98.6
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..|+.+|..++..+...+..+||||......+.|...|...|+++..+||..+ +|+..+..|....+. ++++|..
T Consensus 456 ~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~---VlVATdm 530 (656)
T PRK12898 456 AAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGR---ITVATNM 530 (656)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCc---EEEEccc
Confidence 46899999999887667788999999999999999999999999999999865 555666666544443 6889999
Q ss_pred cccCCCCC---CCC-----EEEEeCCCCCcchhhHHhHhhhhcCCCCeE
Q psy7773 248 GGLGLNLQ---AAD-----TVIIFDSDWNPHQDLQAQDRAHRIGQKNEV 288 (1281)
Q Consensus 248 ~~~GlnL~---~a~-----~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V 288 (1281)
+|.|+++. ... +||+||+|=|+..|.|++||++|.|..-.+
T Consensus 531 AgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s 579 (656)
T PRK12898 531 AGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSY 579 (656)
T ss_pred hhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEE
Confidence 99999988 333 999999999999999999999999986443
No 208
>KOG0949|consensus
Probab=98.81 E-value=8.1e-07 Score=107.95 Aligned_cols=163 Identities=16% Similarity=0.161 Sum_probs=104.0
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHH-HH-CCC
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFE-KW-APS 620 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~-~~-~p~ 620 (1281)
-.+-.+|.+ ++.....+...++..+|-+|||.+.--++...+ +....+-++-|+|..-+ .|-..++. +| ++.
T Consensus 510 F~Pd~WQ~e----lLDsvDr~eSavIVAPTSaGKTfisfY~iEKVL-ResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 510 FCPDEWQRE----LLDSVDRNESAVIVAPTSAGKTFISFYAIEKVL-RESDSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred cCCcHHHHH----HhhhhhcccceEEEeeccCCceeccHHHHHHHH-hhcCCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 456678888 445556788889999999999999888887776 44566889999996544 55555553 33 232
Q ss_pred CcE-EEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccc---cccC--ceeEEEEeCCccccccc-hHHHHHHHhhh
Q psy7773 621 ANV-VAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSV---LSKI--QWKCMIIDEGHRMKNHH-CKLTQTLNTFY 693 (1281)
Q Consensus 621 ~~~-~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~---l~~~--~w~~vIvDEaHr~kn~~-s~~~~~l~~~~ 693 (1281)
+.. +...|.- .+. -....-.+.|+||-++.+....-. -.++ +..+||+||.|.+.+.. +.++..+-.+
T Consensus 585 ~~rg~sl~g~l-tqE---Ysinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l- 659 (1330)
T KOG0949|consen 585 FLRGVSLLGDL-TQE---YSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL- 659 (1330)
T ss_pred cccchhhHhhh-hHH---hcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh-
Confidence 222 1122211 111 111233678999999987553211 1111 57899999999999865 4455555444
Q ss_pred ccCcEEEeecCCCCCChhHHHHHHh
Q psy7773 694 NSSHRVLLTGTPLQNKLPELWALLN 718 (1281)
Q Consensus 694 ~~~~rllLTgTPl~n~~~el~~ll~ 718 (1281)
-.--.|.|||| ++|+..+.-.++
T Consensus 660 i~CP~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 660 IPCPFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred cCCCeeEEecc--cCCHHHHHHHHH
Confidence 33346889999 667666665555
No 209
>PRK13767 ATP-dependent helicase; Provisional
Probab=98.79 E-value=3.6e-08 Score=128.40 Aligned_cols=117 Identities=20% Similarity=0.178 Sum_probs=97.2
Q ss_pred HHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhC------CCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecc
Q psy7773 173 LLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR------DFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 246 (1281)
Q Consensus 173 ~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~------g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~ 246 (1281)
.+...|..+...+.++||||+.+...+.+...|... +..+..+||+++.++|..+.+.|+++..+ +|++|.
T Consensus 272 ~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~---vLVaTs 348 (876)
T PRK13767 272 ALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELK---VVVSST 348 (876)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCe---EEEECC
Confidence 344555555556789999999999999888888762 46788999999999999999999986543 578889
Q ss_pred ccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhc-CCCCeEEEEE
Q psy7773 247 AGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRI-GQKNEVRVLR 292 (1281)
Q Consensus 247 ~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~-Gq~~~V~v~~ 292 (1281)
+++.|||+...++||+|++|.++..+.||+||++|. |....-.++-
T Consensus 349 ~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 349 SLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred hHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 999999999999999999999999999999999986 4444455544
No 210
>KOG0327|consensus
Probab=98.79 E-value=1.4e-08 Score=112.35 Aligned_cols=122 Identities=21% Similarity=0.371 Sum_probs=109.1
Q ss_pred cHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecccc
Q psy7773 169 GKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAG 248 (1281)
Q Consensus 169 ~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~ 248 (1281)
.|+..|.++.. .-...+|||+...-+..|...|..+|+....+||.+.+.+|..++..|+.+.+. +|++|...
T Consensus 251 ~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssr---vlIttdl~ 323 (397)
T KOG0327|consen 251 EKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSR---VLITTDLL 323 (397)
T ss_pred ccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCce---EEeecccc
Confidence 48888888887 345789999999999999999999999999999999999999999999987765 68899999
Q ss_pred ccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccch
Q psy7773 249 GLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSV 299 (1281)
Q Consensus 249 ~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Ti 299 (1281)
+.||+++.++.||+||+|-|+..|..|+||.+|.|.+ -.+.++++..++
T Consensus 324 argidv~~~slvinydlP~~~~~yihR~gr~gr~grk--g~~in~v~~~d~ 372 (397)
T KOG0327|consen 324 ARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRK--GVAINFVTEEDV 372 (397)
T ss_pred ccccchhhcceeeeeccccchhhhhhhcccccccCCC--ceeeeeehHhhH
Confidence 9999999999999999999999999999999999984 455666766543
No 211
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.78 E-value=4.8e-07 Score=115.96 Aligned_cols=72 Identities=19% Similarity=0.171 Sum_probs=57.1
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHH
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEK 616 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~ 616 (1281)
.+||.|.+-...+......+.+++|-.+||+|||+.+++.........+...+++..+.+ +.+.|-..|+++
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 469999999999999999999999999999999999887665554433433456666664 556888889887
No 212
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=98.77 E-value=3.1e-07 Score=113.97 Aligned_cols=115 Identities=13% Similarity=0.165 Sum_probs=100.3
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..|+.++...+..+...+.+|||||.+....+.|...|...|+++..++|.+...++..+...|+.+ . ++++|..
T Consensus 407 ~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~---VlIATdm 481 (762)
T TIGR03714 407 PEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--A---VTVATSM 481 (762)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--e---EEEEccc
Confidence 5689999999988778899999999999999999999999999999999999988887776666542 2 5899999
Q ss_pred cccCCCCC---------CCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeE
Q psy7773 248 GGLGLNLQ---------AADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEV 288 (1281)
Q Consensus 248 ~~~GlnL~---------~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V 288 (1281)
+|.|+++. +.++|+.|++|-+... .|+.||++|.|..-.+
T Consensus 482 AgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s 530 (762)
T TIGR03714 482 AGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSS 530 (762)
T ss_pred cccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeE
Confidence 99999999 7789999999976654 9999999999986543
No 213
>KOG4284|consensus
Probab=98.77 E-value=2e-08 Score=116.49 Aligned_cols=121 Identities=17% Similarity=0.222 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccc
Q psy7773 170 KFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGG 249 (1281)
Q Consensus 170 K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~ 249 (1281)
|+..|..++..+ +-...||||....-.+-|..+|...|+++..|.|.|++.+|..+++.+++- .++ +|++|+..+
T Consensus 259 klq~L~~vf~~i--py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f--~~r-ILVsTDLta 333 (980)
T KOG4284|consen 259 KLQKLTHVFKSI--PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAF--RVR-ILVSTDLTA 333 (980)
T ss_pred HHHHHHHHHhhC--chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhc--eEE-EEEecchhh
Confidence 777777777665 335789999999999999999999999999999999999999999999873 354 488999999
Q ss_pred cCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEec
Q psy7773 250 LGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITV 296 (1281)
Q Consensus 250 ~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~ 296 (1281)
.||+-..++.||++|+|-|...|.+||||++|.|..- ..|..+...
T Consensus 334 RGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G-~aVT~~~~~ 379 (980)
T KOG4284|consen 334 RGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHG-AAVTLLEDE 379 (980)
T ss_pred ccCCccccceEEecCCCcchHHHHHHhhhcccccccc-eeEEEeccc
Confidence 9999999999999999999999999999999999864 444444433
No 214
>KOG0338|consensus
Probab=98.76 E-value=1.4e-07 Score=107.03 Aligned_cols=125 Identities=22% Similarity=0.316 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecccccc
Q psy7773 171 FELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGL 250 (1281)
Q Consensus 171 ~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~ 250 (1281)
-..|..++.... ...++||.+.....+.|.-.|-..|+.+..+||+.++.+|...+..|.+...+ +|++|++++.
T Consensus 414 ea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eid---vLiaTDvAsR 488 (691)
T KOG0338|consen 414 EAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEID---VLIATDVASR 488 (691)
T ss_pred HHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCC---EEEEechhhc
Confidence 344455554443 46899999999999999999999999999999999999999999999986554 5888999999
Q ss_pred CCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHH
Q psy7773 251 GLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERIL 304 (1281)
Q Consensus 251 GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~ 304 (1281)
||++.+..+||+|+.|-....|.+|+||..|.|.. -+.+.|+..+ |-.|+
T Consensus 489 GLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRa--GrsVtlvgE~--dRkll 538 (691)
T KOG0338|consen 489 GLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRA--GRSVTLVGES--DRKLL 538 (691)
T ss_pred cCCccceeEEEeccCchhHHHHHHHhhhhhhcccC--cceEEEeccc--cHHHH
Confidence 99999999999999999999999999999999974 3445566666 44444
No 215
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.76 E-value=3.8e-06 Score=104.50 Aligned_cols=84 Identities=11% Similarity=0.139 Sum_probs=67.7
Q ss_pred cchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCC-ChHHHHHHHHhhcCCCCCeEEEEEecc
Q psy7773 871 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTT-KSEDRGELLRKFNEPESKYFIFLLSTR 949 (1281)
Q Consensus 871 s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~-~~~~R~~~i~~Fn~~~~~~~v~LlsT~ 949 (1281)
..|+.++..-+......|..|||-|.++..-+.|..+|...|+++-.|+... ..+.-..+|..= |..+ .+-|+|.
T Consensus 407 ~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~A--G~~G--~VTIATN 482 (870)
T CHL00122 407 LSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQA--GRKG--SITIATN 482 (870)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhc--CCCC--cEEEecc
Confidence 4689888888888888999999999999999999999999999999999864 334445566553 3333 2689999
Q ss_pred ccccccCcc
Q psy7773 950 AGGLGLNLQ 958 (1281)
Q Consensus 950 agg~GlNL~ 958 (1281)
.+|+|.|+.
T Consensus 483 MAGRGTDI~ 491 (870)
T CHL00122 483 MAGRGTDII 491 (870)
T ss_pred ccCCCcCee
Confidence 999997753
No 216
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=98.75 E-value=6.5e-08 Score=120.85 Aligned_cols=134 Identities=21% Similarity=0.200 Sum_probs=110.7
Q ss_pred cCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecc
Q psy7773 167 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 246 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~ 246 (1281)
..+++..|...|..+...+.++||||......+.|...|...|+++..+||.++..+|..++..|..+. +. +|++|.
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~--i~-VLV~t~ 500 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGE--FD-VLVGIN 500 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCC--ce-EEEEcC
Confidence 457888888888888888999999999999999999999999999999999999999999999998754 33 477889
Q ss_pred ccccCCCCCCCCEEEEeC-----CCCCcchhhHHhHhhhhcCCCCeEEEEEEEecc--chHHHHHHH
Q psy7773 247 AGGLGLNLQAADTVIIFD-----SDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVN--SVEERILAA 306 (1281)
Q Consensus 247 ~~~~GlnL~~a~~vi~~d-----~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~--Tiee~i~~~ 306 (1281)
.++.|+++..++.||++| .+-+...+.|++||++|.+. - .++.|+... ++...|.+.
T Consensus 501 ~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~-G--~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-G--KVIMYADKITDSMQKAIEET 564 (655)
T ss_pred hhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCC-C--EEEEEEcCCCHHHHHHHHHH
Confidence 999999999999999999 46678899999999999742 2 344444433 344444443
No 217
>KOG0343|consensus
Probab=98.74 E-value=2.3e-07 Score=106.32 Aligned_cols=137 Identities=23% Similarity=0.302 Sum_probs=116.1
Q ss_pred cCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEe
Q psy7773 167 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR--DFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLS 244 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~--g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~s 244 (1281)
...|+.+|..+|... ...|.|||-.+...+.++...|... |++...++|.+++..|..+...|.... .++|.|
T Consensus 297 l~~Ki~~L~sFI~sh--lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~---~~vLF~ 371 (758)
T KOG0343|consen 297 LEDKIDMLWSFIKSH--LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKR---AVVLFC 371 (758)
T ss_pred hhhHHHHHHHHHHhc--cccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhc---ceEEEe
Confidence 357899999888765 4478999999999999999998765 999999999999999999999998643 368999
Q ss_pred ccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhcc
Q psy7773 245 TRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKL 311 (1281)
Q Consensus 245 t~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~ 311 (1281)
|++++.||++...+.||-+|+|-+-..|.+|.||..|.+-.-+..+|- ..|-+|.|+..+..|.
T Consensus 372 TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L---~psEeE~~l~~Lq~k~ 435 (758)
T KOG0343|consen 372 TDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLML---TPSEEEAMLKKLQKKK 435 (758)
T ss_pred ehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEE---cchhHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999998876665442 3445677777776663
No 218
>PF14619 SnAC: Snf2-ATP coupling, chromatin remodelling complex
Probab=98.72 E-value=3.7e-09 Score=92.45 Aligned_cols=58 Identities=47% Similarity=0.805 Sum_probs=43.1
Q ss_pred CcccccccCCCcccccCchHHhhhhHHHHHHHHHHHHhcccccccccccccCCCcCHHHHH
Q psy7773 1088 KPRLVEIKELPDWMVKDDDEVENSMYEEEREREKEEALMGRGSRQRKQVDYTDSLTDQEWL 1148 (1281)
Q Consensus 1088 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r~~~~~~~~~~~~~~~ 1148 (1281)
.+|||+++|||+||..+...... .+ ..........+|||+|+||.|+|+|++||+|||
T Consensus 17 p~RLm~e~ELPe~~~~d~~~~~~--~~-~~e~~~~~~~~grG~R~RK~V~Y~D~LTEeQwL 74 (74)
T PF14619_consen 17 PSRLMEESELPEWYREDIEEELE--KE-EEEEEAETNEYGRGKRERKEVSYDDGLTEEQWL 74 (74)
T ss_pred CccccchhhchHHHHhcchhhhh--hh-hhhhccchhhcccccccccccccCCCCCHHHhC
Confidence 35999999999999998776511 11 000111234579999999999999999999996
No 219
>KOG0948|consensus
Probab=98.72 E-value=2.9e-07 Score=108.79 Aligned_cols=141 Identities=18% Similarity=0.244 Sum_probs=93.8
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCCCCc
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAPSAN 622 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p~~~ 622 (1281)
.+|-|+|..++. ...++...++..-|..|||++|=-.|+.-+.. ..+++...|-..| .|=.+||..=|.++-
T Consensus 128 F~LDpFQ~~aI~----Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---kQRVIYTSPIKALSNQKYREl~~EF~DVG 200 (1041)
T KOG0948|consen 128 FTLDPFQSTAIK----CIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE---KQRVIYTSPIKALSNQKYRELLEEFKDVG 200 (1041)
T ss_pred cccCchHhhhhh----hhcCCceEEEEeecCCCcchHHHHHHHHHHHh---cCeEEeeChhhhhcchhHHHHHHHhcccc
Confidence 478999999874 44577888888889999999987666554433 2488889996666 555678776665543
Q ss_pred EEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhc----ccccccCceeEEEEeCCccccccch-HHH-HHHHhhhccC
Q psy7773 623 VVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKD----KSVLSKIQWKCMIIDEGHRMKNHHC-KLT-QTLNTFYNSS 696 (1281)
Q Consensus 623 ~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~----~~~l~~~~w~~vIvDEaHr~kn~~s-~~~-~~l~~~~~~~ 696 (1281)
+. .|. -..+.....+|+|-+.|++- ...+..+.| ||+||.|.|+...- -.| ..+.-+....
T Consensus 201 LM--TGD---------VTInP~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEIHYMRDkERGVVWEETIIllP~~v 267 (1041)
T KOG0948|consen 201 LM--TGD---------VTINPDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEIHYMRDKERGVVWEETIILLPDNV 267 (1041)
T ss_pred ee--ecc---------eeeCCCCceeeeHHHHHHHHHhccchHhheeee--EEeeeehhccccccceeeeeeEEeccccc
Confidence 32 232 11245667899999988652 344555566 99999999985331 112 1122223455
Q ss_pred cEEEeecC
Q psy7773 697 HRVLLTGT 704 (1281)
Q Consensus 697 ~rllLTgT 704 (1281)
+-++||||
T Consensus 268 r~VFLSAT 275 (1041)
T KOG0948|consen 268 RFVFLSAT 275 (1041)
T ss_pred eEEEEecc
Confidence 66899999
No 220
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.71 E-value=3e-06 Score=111.34 Aligned_cols=96 Identities=19% Similarity=0.270 Sum_probs=67.0
Q ss_pred HHHHHHhhhhh-hcCCeEEEEechHHHHHHHHHHHHHCCC--cEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEecccc
Q psy7773 875 ELLDRILPKFK-ETKHRVLMFCQMTQLMTILEDYFIWRDF--SYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAG 951 (1281)
Q Consensus 875 ~~L~~lL~~~~-~~~~kvLIFsq~~~~ld~L~~~L~~~g~--~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~ag 951 (1281)
..+.+.|..+. ..+.++|||+.+..++..+...|..... .+..+.-+++...|..+++.|..++.. +|+.|.+.
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~---iLlG~~sF 814 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKA---ILLGTSSF 814 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCe---EEEecCcc
Confidence 34455554443 4556788888888889888888865422 133333233334689999999875544 68889999
Q ss_pred ccccCccc--CCEEEEeCCCC-Chh
Q psy7773 952 GLGLNLQA--ADTVIIFDSDW-NPH 973 (1281)
Q Consensus 952 g~GlNL~~--ad~VI~~D~~w-np~ 973 (1281)
.+|||+++ +..||+.-.|+ +|.
T Consensus 815 wEGVD~pg~~l~~viI~kLPF~~p~ 839 (928)
T PRK08074 815 WEGIDIPGDELSCLVIVRLPFAPPD 839 (928)
T ss_pred cCccccCCCceEEEEEecCCCCCCC
Confidence 99999997 48899988887 453
No 221
>KOG1123|consensus
Probab=98.68 E-value=3.3e-07 Score=103.69 Aligned_cols=128 Identities=20% Similarity=0.338 Sum_probs=102.9
Q ss_pred cCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecc
Q psy7773 167 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 246 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~ 246 (1281)
...|+.+..-+++-....|.|+||||...-. |..+--..|-+| |.|.+++.+|.+|+..|+-. +.+.-+++| +
T Consensus 525 NP~KFraCqfLI~~HE~RgDKiIVFsDnvfA---Lk~YAikl~Kpf--IYG~Tsq~ERm~ILqnFq~n-~~vNTIFlS-K 597 (776)
T KOG1123|consen 525 NPNKFRACQFLIKFHERRGDKIIVFSDNVFA---LKEYAIKLGKPF--IYGPTSQNERMKILQNFQTN-PKVNTIFLS-K 597 (776)
T ss_pred CcchhHHHHHHHHHHHhcCCeEEEEeccHHH---HHHHHHHcCCce--EECCCchhHHHHHHHhcccC-CccceEEEe-e
Confidence 3678888888888888899999999976544 444444456665 78999999999999999874 445556666 9
Q ss_pred ccccCCCCCCCCEEEEeCCCC-CcchhhHHhHhhhhcCCCCe----EEEEEEEeccchHH
Q psy7773 247 AGGLGLNLQAADTVIIFDSDW-NPHQDLQAQDRAHRIGQKNE----VRVLRLITVNSVEE 301 (1281)
Q Consensus 247 ~~~~GlnL~~a~~vi~~d~~w-np~~~~Qa~gR~~R~Gq~~~----V~v~~l~~~~Tiee 301 (1281)
+|...|+|..|+.+|-+..+. +-..+.||.|||-|.-..+. +..|-|+..+|.|-
T Consensus 598 VgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM 657 (776)
T KOG1123|consen 598 VGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEM 657 (776)
T ss_pred ccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHH
Confidence 999999999999999888776 45667899999999764332 89999999999873
No 222
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.66 E-value=8.3e-07 Score=110.48 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=101.9
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..|+.+|...+......+..|||||.+....+.|...|...|+++..++|.....++.-+...|+. +. ++++|..
T Consensus 423 ~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~--g~---VtIATnm 497 (796)
T PRK12906 423 DSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQR--GA---VTIATNM 497 (796)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCC--ce---EEEEecc
Confidence 458889999988877889999999999999999999999999999999999886666666666654 33 6888999
Q ss_pred cccCCCCC---CCC-----EEEEeCCCCCcchhhHHhHhhhhcCCCCeEE
Q psy7773 248 GGLGLNLQ---AAD-----TVIIFDSDWNPHQDLQAQDRAHRIGQKNEVR 289 (1281)
Q Consensus 248 ~~~GlnL~---~a~-----~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~ 289 (1281)
+|+|+++. .+. |||.+++|-|+..+.|+.||++|.|..-...
T Consensus 498 AGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~ 547 (796)
T PRK12906 498 AGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSR 547 (796)
T ss_pred ccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceE
Confidence 99999985 556 9999999999999999999999999976543
No 223
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.66 E-value=4.2e-06 Score=107.94 Aligned_cols=89 Identities=12% Similarity=0.158 Sum_probs=65.0
Q ss_pred HHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEecccccccc
Q psy7773 876 LLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGL 955 (1281)
Q Consensus 876 ~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~Gl 955 (1281)
.+...+..+...+.++||++.+..+|..+...|....++. ...|... .|.+++++|+.++.. +|+.|.+..+|+
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~---vLlG~~sFwEGV 708 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ---ILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe---EEEecchhhCCC
Confidence 4555555555667789999999999998888887665544 5556433 356789999885544 689999999999
Q ss_pred Cccc--CCEEEEeCCCC
Q psy7773 956 NLQA--ADTVIIFDSDW 970 (1281)
Q Consensus 956 NL~~--ad~VI~~D~~w 970 (1281)
|++. +..||+.-+|+
T Consensus 709 D~p~~~~~~viI~kLPF 725 (820)
T PRK07246 709 DFVQADRMIEVITRLPF 725 (820)
T ss_pred CCCCCCeEEEEEecCCC
Confidence 9973 56677777664
No 224
>KOG0950|consensus
Probab=98.66 E-value=4.4e-07 Score=111.10 Aligned_cols=157 Identities=18% Similarity=0.164 Sum_probs=92.7
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHH-HHHHhcCCCCCEEEEeCCccHHHHHH-HHHHHC--CC
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLT-YLMEKKKNLGPYLVIVPLSTLSNWVL-EFEKWA--PS 620 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~-~l~~~~~~~~~~LIV~P~s~l~~W~~-E~~~~~--p~ 620 (1281)
.++++|.+.+.- .....+.|.|.+.+|+.|||+++=.++. .++.. .+.+|.+.|-..+.+=.. ++..+. -+
T Consensus 223 ~~fewq~ecls~--~~~~e~~nliys~Pts~gktlvaeilml~~~l~~---rr~~llilp~vsiv~Ek~~~l~~~~~~~G 297 (1008)
T KOG0950|consen 223 KLFEWQAECLSL--PRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR---RRNVLLILPYVSIVQEKISALSPFSIDLG 297 (1008)
T ss_pred HHHHHHHHHhcc--hhhhcccceEEeCCCccchHHHHHHHHHHHHHHH---hhceeEecceeehhHHHHhhhhhhccccC
Confidence 577777776642 2334677889999999999998654443 33333 246788888655544332 333333 24
Q ss_pred CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhccccccc----CceeEEEEeCCccccccc--hH----HHHHHH
Q psy7773 621 ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSK----IQWKCMIIDEGHRMKNHH--CK----LTQTLN 690 (1281)
Q Consensus 621 ~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~----~~w~~vIvDEaHr~kn~~--s~----~~~~l~ 690 (1281)
+.+-.|.|.- ........-.|.|||.+.-......+-. ....+|||||-|.+...+ .. +++.+.
T Consensus 298 ~~ve~y~g~~------~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y 371 (1008)
T KOG0950|consen 298 FPVEEYAGRF------PPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILY 371 (1008)
T ss_pred CcchhhcccC------CCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHH
Confidence 5666666531 1122335568999999876554333321 145789999999986432 22 233332
Q ss_pred hhhcc-CcEEEeecCCCCCChhH
Q psy7773 691 TFYNS-SHRVLLTGTPLQNKLPE 712 (1281)
Q Consensus 691 ~~~~~-~~rllLTgTPl~n~~~e 712 (1281)
....+ -..++||||-.+|.+-.
T Consensus 372 ~~~~~~~~iIGMSATi~N~~lL~ 394 (1008)
T KOG0950|consen 372 ENLETSVQIIGMSATIPNNSLLQ 394 (1008)
T ss_pred hccccceeEeeeecccCChHHHH
Confidence 21111 23689999976655433
No 225
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.66 E-value=1.3e-07 Score=121.99 Aligned_cols=110 Identities=18% Similarity=0.162 Sum_probs=94.0
Q ss_pred hhCCCeEEEEeccHHHHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCE
Q psy7773 182 KETKHRVLMFCQMTQLMTILEDYFIWR--DFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADT 259 (1281)
Q Consensus 182 ~~~~~kvlIFs~~~~~~~~l~~~l~~~--g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~ 259 (1281)
...+.+++|||+....++.+...|... ++++..+||.++..+|..++..|.++..+ +|+||.+.+.|||+..+++
T Consensus 657 l~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~---ILVaT~iie~GIDIp~v~~ 733 (926)
T TIGR00580 657 LLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQ---VLVCTTIIETGIDIPNANT 733 (926)
T ss_pred HHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCC---EEEECChhhcccccccCCE
Confidence 346789999999999999999999874 78999999999999999999999987654 5888899999999999999
Q ss_pred EEEeCCC-CCcchhhHHhHhhhhcCCCCeEEEEEEEec
Q psy7773 260 VIIFDSD-WNPHQDLQAQDRAHRIGQKNEVRVLRLITV 296 (1281)
Q Consensus 260 vi~~d~~-wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~ 296 (1281)
||+++.+ +..+.+.|++||++|.|..- ++|-|+..
T Consensus 734 VIi~~a~~~gls~l~Qr~GRvGR~g~~g--~aill~~~ 769 (926)
T TIGR00580 734 IIIERADKFGLAQLYQLRGRVGRSKKKA--YAYLLYPH 769 (926)
T ss_pred EEEecCCCCCHHHHHHHhcCCCCCCCCe--EEEEEECC
Confidence 9999885 45678899999999998753 44555544
No 226
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.65 E-value=9.1e-06 Score=100.20 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHC-----CCCcE
Q psy7773 550 QIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWA-----PSANV 623 (1281)
Q Consensus 550 Q~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~-----p~~~~ 623 (1281)
|.+-+.++...+.++...++-..||+|||+..+..+...... ....++||++|+..| .|+..++..+. ..+++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~-~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~ 80 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKE-RPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQA 80 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHh-ccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeE
Confidence 777778888888888778888999999999987665444322 224699999998665 78887776544 24445
Q ss_pred EEEeC
Q psy7773 624 VAYKG 628 (1281)
Q Consensus 624 ~~~~g 628 (1281)
++..|
T Consensus 81 ~~lkG 85 (636)
T TIGR03117 81 GFFPG 85 (636)
T ss_pred EEEEC
Confidence 55444
No 227
>KOG0344|consensus
Probab=98.64 E-value=1.3e-07 Score=110.11 Aligned_cols=123 Identities=19% Similarity=0.303 Sum_probs=105.8
Q ss_pred cCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHH-HhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEec
Q psy7773 167 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYF-IWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLST 245 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l-~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st 245 (1281)
..+|+.++.+++..... -.+|||-|+......|-..| ...++.+..+||..++.+|...+++|+.+. +.| |++|
T Consensus 371 e~~K~lA~rq~v~~g~~--PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~--Iwv-LicT 445 (593)
T KOG0344|consen 371 EKGKLLALRQLVASGFK--PPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGK--IWV-LICT 445 (593)
T ss_pred chhHHHHHHHHHhccCC--CCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccC--eeE-EEeh
Confidence 45788888888876533 56999999999999999888 778999999999999999999999999854 555 7888
Q ss_pred cccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEec
Q psy7773 246 RAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITV 296 (1281)
Q Consensus 246 ~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~ 296 (1281)
...+.||+|++++.||+||.|-.-..|..||||.+|.|+.-. .|.|++.
T Consensus 446 dll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~--Aitfytd 494 (593)
T KOG0344|consen 446 DLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGK--AITFYTD 494 (593)
T ss_pred hhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcc--eEEEecc
Confidence 999999999999999999999999999999999999998643 3444444
No 228
>KOG0348|consensus
Probab=98.63 E-value=2.2e-07 Score=106.25 Aligned_cols=118 Identities=23% Similarity=0.442 Sum_probs=91.3
Q ss_pred CcHHH--HHHHHHHHhh--hCCCeEEEEeccHHHHHH----HHHHHHh------------------CCCcEEEecCCCCH
Q psy7773 168 SGKFE--LLDRILPKFK--ETKHRVLMFCQMTQLMTI----LEDYFIW------------------RDFSYLRLDGTTKS 221 (1281)
Q Consensus 168 s~K~~--~L~~ll~~~~--~~~~kvlIFs~~~~~~~~----l~~~l~~------------------~g~~~~~~~g~~~~ 221 (1281)
.+|+. .|..+|.+.. ....|+|||-...+.++. +...+.. .+.++.++||+|++
T Consensus 404 PpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~Q 483 (708)
T KOG0348|consen 404 PPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQ 483 (708)
T ss_pred CCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhH
Confidence 45554 4555665543 234578888766665443 3333322 13469999999999
Q ss_pred HHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeE
Q psy7773 222 EDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEV 288 (1281)
Q Consensus 222 ~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V 288 (1281)
++|...+..|...... +|+||++++.||+|.....||-||+|..++.|..|+||..|+|-+-.-
T Consensus 484 eeRts~f~~Fs~~~~~---VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~a 547 (708)
T KOG0348|consen 484 EERTSVFQEFSHSRRA---VLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEA 547 (708)
T ss_pred HHHHHHHHhhccccce---EEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCce
Confidence 9999999999875443 789999999999999999999999999999999999999999987653
No 229
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=98.62 E-value=2.5e-07 Score=111.15 Aligned_cols=110 Identities=20% Similarity=0.246 Sum_probs=97.7
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEEe
Q psy7773 184 TKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIF 263 (1281)
Q Consensus 184 ~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~ 263 (1281)
.+..-||||..+...+.|...|...|+....|||+++.++|..+-+.|.+++.+ ++++|.|-|.|||-.....||||
T Consensus 229 ~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~---iiVAT~AFGMGIdKpdVRfViH~ 305 (590)
T COG0514 229 LSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIK---VMVATNAFGMGIDKPDVRFVIHY 305 (590)
T ss_pred cCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCc---EEEEeccccCccCCCCceEEEEe
Confidence 344579999999999999999999999999999999999999999999986654 68888999999999999999999
Q ss_pred CCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccc
Q psy7773 264 DSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNS 298 (1281)
Q Consensus 264 d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~T 298 (1281)
|+|-+...|.|-+||++|.|....+. -|+....
T Consensus 306 ~lP~s~EsYyQE~GRAGRDG~~a~ai--ll~~~~D 338 (590)
T COG0514 306 DLPGSIESYYQETGRAGRDGLPAEAI--LLYSPED 338 (590)
T ss_pred cCCCCHHHHHHHHhhccCCCCcceEE--Eeecccc
Confidence 99999999999999999999965543 3444443
No 230
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.61 E-value=1.7e-06 Score=108.39 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=107.4
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..|+.+|...+..+...|..|||||.+....+.|...|...|+++..+|+ ...+|+..+-.|..+.+. ++++|..
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~---VtIATNM 655 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGA---VTIATNM 655 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCe---EEEeccC
Confidence 36999999999888888999999999999999999999999999999997 577999999999876554 6899999
Q ss_pred cccCCCCCCCC--------EEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHH
Q psy7773 248 GGLGLNLQAAD--------TVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILA 305 (1281)
Q Consensus 248 ~~~GlnL~~a~--------~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~ 305 (1281)
+|+|+++.-.. +||.++.|-+...+.|++||++|.|..-....|. |.|+.++.
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffv-----SleD~Lmr 716 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYV-----SLEDELMR 716 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEe-----chhHHHHH
Confidence 99999988333 4588899999999999999999999975543332 34555543
No 231
>KOG0347|consensus
Probab=98.61 E-value=1.1e-06 Score=101.02 Aligned_cols=124 Identities=21% Similarity=0.300 Sum_probs=104.4
Q ss_pred CeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEEeCC
Q psy7773 186 HRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDS 265 (1281)
Q Consensus 186 ~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~ 265 (1281)
.+.||||+..+.+..|.-+|...+++...+|..|.+.+|.+.+++|.+.++. +|++|++++.||++++..|||||-.
T Consensus 464 GrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~---VLiaTDVAARGLDIp~V~HVIHYqV 540 (731)
T KOG0347|consen 464 GRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSG---VLIATDVAARGLDIPGVQHVIHYQV 540 (731)
T ss_pred CceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCe---EEEeehhhhccCCCCCcceEEEeec
Confidence 5789999999999999999999999999999999999999999999986664 6888999999999999999999999
Q ss_pred CCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHH--HHHHHHhhccccc
Q psy7773 266 DWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEE--RILAAARYKLNMD 314 (1281)
Q Consensus 266 ~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee--~i~~~~~~K~~l~ 314 (1281)
|-....|.+|-||..|.|.. .|.|. |+.+..+-- +++..+..+..+.
T Consensus 541 PrtseiYVHRSGRTARA~~~-Gvsvm-l~~P~e~~~~~KL~ktL~k~~dlp 589 (731)
T KOG0347|consen 541 PRTSEIYVHRSGRTARANSE-GVSVM-LCGPQEVGPLKKLCKTLKKKEDLP 589 (731)
T ss_pred CCccceeEecccccccccCC-CeEEE-EeChHHhHHHHHHHHHHhhccCCC
Confidence 99999999999999998763 35443 345444433 3455666665553
No 232
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=98.60 E-value=1.7e-07 Score=117.34 Aligned_cols=113 Identities=21% Similarity=0.357 Sum_probs=90.4
Q ss_pred HHHHHHHHHHH-hhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHH-----HHHHHhcC----CC----
Q psy7773 170 KFELLDRILPK-FKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRG-----ELLRKFNE----PE---- 235 (1281)
Q Consensus 170 K~~~L~~ll~~-~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~-----~~i~~F~~----~~---- 235 (1281)
|+..+...+.. +...+.++||||+.+.....|...|...|+ ..+||.+++.+|. .+++.|.+ +.
T Consensus 256 Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~ 333 (844)
T TIGR02621 256 FLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARP 333 (844)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccc
Confidence 44444433332 234568999999999999999999998887 8999999999999 78999975 22
Q ss_pred -CCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeE
Q psy7773 236 -SKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEV 288 (1281)
Q Consensus 236 -~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V 288 (1281)
.+. .+|++|++++.|||+.. ++||++..|+ ..|.||+||++|.|.....
T Consensus 334 ~~g~-~ILVATdVaerGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~ 383 (844)
T TIGR02621 334 QQGT-VYLVCTSAGEVGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQAC 383 (844)
T ss_pred cccc-eEEeccchhhhcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCc
Confidence 112 46899999999999986 8999877774 7899999999999996543
No 233
>KOG0339|consensus
Probab=98.59 E-value=1.4e-07 Score=106.94 Aligned_cols=128 Identities=23% Similarity=0.348 Sum_probs=112.5
Q ss_pred cCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecc
Q psy7773 167 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 246 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~ 246 (1281)
...|+.+|...|......| +||||..-....+.|...|...|+.+..+||++.+.+|.+.+..|..+... +|+.|+
T Consensus 451 ~~~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~---VlvatD 526 (731)
T KOG0339|consen 451 EEKKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKP---VLVATD 526 (731)
T ss_pred cHHHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCc---eEEEee
Confidence 4579999999988765544 899999888899999999999999999999999999999999999975544 577789
Q ss_pred ccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchH
Q psy7773 247 AGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVE 300 (1281)
Q Consensus 247 ~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tie 300 (1281)
++..|+++....+||+||..-+-..+.|||||.+|-|-+ -..|.|++....+
T Consensus 527 vaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 527 VAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred HhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 999999999999999999999999999999999999987 5677888876443
No 234
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.59 E-value=3.3e-07 Score=116.50 Aligned_cols=117 Identities=13% Similarity=0.157 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEeccHH--------HHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHhcCCCCCce
Q psy7773 170 KFELLDRILPKFKETKHRVLMFCQMTQ--------LMTILEDYFIWR--DFSYLRLDGTTKSEDRGELLRKFNEPESKYF 239 (1281)
Q Consensus 170 K~~~L~~ll~~~~~~~~kvlIFs~~~~--------~~~~l~~~l~~~--g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~ 239 (1281)
+...+...+......+++++|||.... ....+.+.|... ++++..+||+++..+|..+++.|.++..+
T Consensus 456 ~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~-- 533 (681)
T PRK10917 456 RRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEID-- 533 (681)
T ss_pred cHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC--
Confidence 344455555555578899999997432 233445555444 57899999999999999999999986544
Q ss_pred EEEEeccccccCCCCCCCCEEEEeCCCC-CcchhhHHhHhhhhcCCCCeEE
Q psy7773 240 IFLLSTRAGGLGLNLQAADTVIIFDSDW-NPHQDLQAQDRAHRIGQKNEVR 289 (1281)
Q Consensus 240 vll~st~~~~~GlnL~~a~~vi~~d~~w-np~~~~Qa~gR~~R~Gq~~~V~ 289 (1281)
+|++|.+.++|+|+..+++||+++++. ..+.+.|+.||++|.|..-.|.
T Consensus 534 -ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 583 (681)
T PRK10917 534 -ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCV 583 (681)
T ss_pred -EEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEE
Confidence 588889999999999999999999985 5688899999999998754443
No 235
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.57 E-value=3.9e-07 Score=115.09 Aligned_cols=116 Identities=16% Similarity=0.230 Sum_probs=91.1
Q ss_pred HHHHHHHHHhhhCCCeEEEEeccH--------HHHHHHHHHHHh--CCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEE
Q psy7773 172 ELLDRILPKFKETKHRVLMFCQMT--------QLMTILEDYFIW--RDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIF 241 (1281)
Q Consensus 172 ~~L~~ll~~~~~~~~kvlIFs~~~--------~~~~~l~~~l~~--~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vl 241 (1281)
..+...+......+.+++|||... .....+...|.. .++.+..+||+++..+|..+++.|.++..+ +
T Consensus 435 ~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~---I 511 (630)
T TIGR00643 435 DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVD---I 511 (630)
T ss_pred HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCC---E
Confidence 444555555556788999999754 233344444543 478899999999999999999999986654 5
Q ss_pred EEeccccccCCCCCCCCEEEEeCCCC-CcchhhHHhHhhhhcCCCCeEEE
Q psy7773 242 LLSTRAGGLGLNLQAADTVIIFDSDW-NPHQDLQAQDRAHRIGQKNEVRV 290 (1281)
Q Consensus 242 l~st~~~~~GlnL~~a~~vi~~d~~w-np~~~~Qa~gR~~R~Gq~~~V~v 290 (1281)
|++|.+.++|+|+..+++||+++++. +.+.+.|+.||++|-|..-.|.+
T Consensus 512 LVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il 561 (630)
T TIGR00643 512 LVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLL 561 (630)
T ss_pred EEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEE
Confidence 88889999999999999999999885 67889999999999987654443
No 236
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.56 E-value=3.3e-07 Score=120.83 Aligned_cols=106 Identities=14% Similarity=0.148 Sum_probs=91.2
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEE
Q psy7773 184 TKHRVLMFCQMTQLMTILEDYFIWR--DFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVI 261 (1281)
Q Consensus 184 ~~~kvlIFs~~~~~~~~l~~~l~~~--g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi 261 (1281)
.+.+++|||+....++.+...|... ++++..+||+++..+|..++.+|.++..+ +|++|.+++.|||+..+++||
T Consensus 808 r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~---VLVaTdIierGIDIP~v~~VI 884 (1147)
T PRK10689 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN---VLVCTTIIETGIDIPTANTII 884 (1147)
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCC---EEEECchhhcccccccCCEEE
Confidence 4678999999999999999999877 78999999999999999999999986654 588889999999999999999
Q ss_pred EeCC-CCCcchhhHHhHhhhhcCCCCeEEEEEEE
Q psy7773 262 IFDS-DWNPHQDLQAQDRAHRIGQKNEVRVLRLI 294 (1281)
Q Consensus 262 ~~d~-~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~ 294 (1281)
+.+. .|+.+.+.|++||++|.|.+- ++|-++
T Consensus 885 i~~ad~fglaq~~Qr~GRvGR~g~~g--~a~ll~ 916 (1147)
T PRK10689 885 IERADHFGLAQLHQLRGRVGRSHHQA--YAWLLT 916 (1147)
T ss_pred EecCCCCCHHHHHHHhhccCCCCCce--EEEEEe
Confidence 8766 467788999999999998864 444343
No 237
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.56 E-value=1.9e-05 Score=99.05 Aligned_cols=120 Identities=15% Similarity=0.217 Sum_probs=97.8
Q ss_pred ccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEecc
Q psy7773 870 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 949 (1281)
Q Consensus 870 ~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~ 949 (1281)
...|+.++..-+..+...|..|||-|.++..-+.|...|...|+++-.|+.... +.-..++..=-. .+ .+-|+|.
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-~~EAeIVA~AG~--~G--aVTIATN 684 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-QKEAEIVAEAGQ--PG--TVTIATN 684 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-hhHHHHHHhcCC--CC--cEEEecc
Confidence 357999999999999999999999999999999999999999999888876543 222344443322 22 2689999
Q ss_pred ccccccCcc--------cCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEE
Q psy7773 950 AGGLGLNLQ--------AADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 994 (1281)
Q Consensus 950 agg~GlNL~--------~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~ 994 (1281)
.+|+|-|+. +.=+||.-..+-|...+.|..||++|.|..-....|
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 999999986 345899999999999999999999999987765444
No 238
>KOG0354|consensus
Probab=98.55 E-value=6.3e-07 Score=109.04 Aligned_cols=130 Identities=23% Similarity=0.325 Sum_probs=102.4
Q ss_pred ccCcHHHHHHHHHHHhhh--CCCeEEEEeccHHHHHHHHHHHH-h--CCCcEEEecC--------CCCHHHHHHHHHHhc
Q psy7773 166 RTSGKFELLDRILPKFKE--TKHRVLMFCQMTQLMTILEDYFI-W--RDFSYLRLDG--------TTKSEDRGELLRKFN 232 (1281)
Q Consensus 166 ~~s~K~~~L~~ll~~~~~--~~~kvlIFs~~~~~~~~l~~~l~-~--~g~~~~~~~g--------~~~~~~R~~~i~~F~ 232 (1281)
...+|++.|.++|.+... ...++|||+.++..+..|..+|. . .|++...+-| ++++.+.+++++.|+
T Consensus 392 ~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr 471 (746)
T KOG0354|consen 392 KENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFR 471 (746)
T ss_pred ccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHh
Confidence 468999999999977654 45789999999999999999887 2 2455444443 578889999999999
Q ss_pred CCCCCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHH
Q psy7773 233 EPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERIL 304 (1281)
Q Consensus 233 ~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~ 304 (1281)
+|... +|++|.+|-+||+...|+.||.||..-||..+.||+|| +|-- .=.++-|.+ +.+..-+
T Consensus 472 ~G~~N---vLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~---ns~~vll~t--~~~~~~~ 534 (746)
T KOG0354|consen 472 DGEIN---VLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRAR---NSKCVLLTT--GSEVIEF 534 (746)
T ss_pred CCCcc---EEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cccc---CCeEEEEEc--chhHHHH
Confidence 86655 58889999999999999999999999999999999999 6653 344444444 3444333
No 239
>KOG1513|consensus
Probab=98.54 E-value=1.1e-06 Score=104.16 Aligned_cols=113 Identities=22% Similarity=0.295 Sum_probs=79.6
Q ss_pred HHhhcCCCCCeEEEEEeccccccccCcccCCE--------EEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCH
Q psy7773 931 LRKFNEPESKYFIFLLSTRAGGLGLNLQAADT--------VIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSV 1002 (1281)
Q Consensus 931 i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~--------VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~ti 1002 (1281)
-++|.+++.- | -|-+.|++-||.||.-.+ =|-+++||+...-+|-.||.||-.|.+...+..||+.=--
T Consensus 850 KqrFM~GeK~--v-AIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAG 926 (1300)
T KOG1513|consen 850 KQRFMDGEKL--V-AIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAG 926 (1300)
T ss_pred Hhhhccccce--e-eeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhcc
Confidence 3578886543 3 444688999999997443 3558999999999999999999999999888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC------------cCCCCCChhhHHHHHHHHhccC
Q psy7773 1003 EERILAAARYKLNMDEKVIQAG------------MFDQKSTGSERHEFLQTILHQD 1046 (1281)
Q Consensus 1003 Ee~I~~~~~~K~~l~~~vi~~g------------~~~~~~~~~~~~~~l~~il~~~ 1046 (1281)
|.+......+.+.-..+.-.+. .+|++....-..-.|+.|+...
T Consensus 927 ErRFAS~VAKRLESLGALThGDRRATetRDLSqfNidNkyGr~ALe~vl~ti~~~~ 982 (1300)
T KOG1513|consen 927 ERRFASIVAKRLESLGALTHGDRRATETRDLSQFNIDNKYGRRALETVLTTILSQT 982 (1300)
T ss_pred chHHHHHHHHHHHhhccccccccccccccchhhhcccchhhHHHHHHHHHHHhccc
Confidence 7777777766665544433221 2334444444555566666554
No 240
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.54 E-value=7.5e-05 Score=93.03 Aligned_cols=84 Identities=12% Similarity=0.148 Sum_probs=68.3
Q ss_pred cchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCC-CChHHHHHHHHhhcCCCCCeEEEEEecc
Q psy7773 871 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGT-TKSEDRGELLRKFNEPESKYFIFLLSTR 949 (1281)
Q Consensus 871 s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~-~~~~~R~~~i~~Fn~~~~~~~v~LlsT~ 949 (1281)
..|+.++..-+..+...|..|||-|.++..-+.|...|...|+++-.|+.. ...+.-..+|..= |..+ .+-|+|.
T Consensus 422 ~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~A--G~~G--aVTIATN 497 (939)
T PRK12902 422 IAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQA--GRKG--AVTIATN 497 (939)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhc--CCCC--cEEEecc
Confidence 689999998888888999999999999999999999999999999999886 3334445566553 3333 2689999
Q ss_pred ccccccCcc
Q psy7773 950 AGGLGLNLQ 958 (1281)
Q Consensus 950 agg~GlNL~ 958 (1281)
.+|+|-|+.
T Consensus 498 MAGRGTDIk 506 (939)
T PRK12902 498 MAGRGTDII 506 (939)
T ss_pred CCCCCcCEe
Confidence 999997754
No 241
>KOG0922|consensus
Probab=98.53 E-value=8.8e-06 Score=96.85 Aligned_cols=110 Identities=21% Similarity=0.250 Sum_probs=78.1
Q ss_pred eEEEEechHHHHHHHHHHHHHC----CC----cEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCC
Q psy7773 890 RVLMFCQMTQLMTILEDYFIWR----DF----SYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAAD 961 (1281)
Q Consensus 890 kvLIFsq~~~~ld~L~~~L~~~----g~----~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad 961 (1281)
-+|||-.-..-.+.+...|... +- -++-++|+++.+++.++ |.....+++-+++||..+...|.+.+.-
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~GI~ 336 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDGIR 336 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecceE
Confidence 3899988887666666666443 22 24568999999887765 5544445566799999999999999988
Q ss_pred EEE--------EeCCCC-------ChhhhhhHhHhHHhhCCCCceEEEEEEeCCCH
Q psy7773 962 TVI--------IFDSDW-------NPHQDLQAQDRAHRIGQKNEVRVLRLITVNSV 1002 (1281)
Q Consensus 962 ~VI--------~~D~~w-------np~~~~Qa~gR~~RiGQ~k~V~V~rli~~~ti 1002 (1281)
.|| .|++.- -|..-.||.-|++|.|.+.+..+|||.++.-.
T Consensus 337 YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 337 YVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred EEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 776 233311 12345567777777777888999999998765
No 242
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.53 E-value=7.7e-06 Score=104.87 Aligned_cols=81 Identities=16% Similarity=0.210 Sum_probs=63.3
Q ss_pred hcCCeEEEEechHHHHHHHHHHHHHCCCc-EEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCccc--CCE
Q psy7773 886 ETKHRVLMFCQMTQLMTILEDYFIWRDFS-YLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQA--ADT 962 (1281)
Q Consensus 886 ~~~~kvLIFsq~~~~ld~L~~~L~~~g~~-~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~--ad~ 962 (1281)
..+.++|||+.+-.+|..+.+.|...... .+...|..+ +..+++.|...... .|++++...++|+|+++ +..
T Consensus 477 ~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l~~ 551 (654)
T COG1199 477 ASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG--LILVGGGSFWEGVDFPGDALRL 551 (654)
T ss_pred hcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCeeE
Confidence 34558999999999999999999877653 455555555 34889999875543 47999999999999997 688
Q ss_pred EEEeCCCCC
Q psy7773 963 VIIFDSDWN 971 (1281)
Q Consensus 963 VI~~D~~wn 971 (1281)
||+.-.|+=
T Consensus 552 vvI~~lPfp 560 (654)
T COG1199 552 VVIVGLPFP 560 (654)
T ss_pred EEEEecCCC
Confidence 999888874
No 243
>KOG0346|consensus
Probab=98.48 E-value=2.2e-06 Score=96.20 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=99.8
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecc-
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR- 246 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~- 246 (1281)
-.|+..+..+|+--. -..|.|||.+..+.--.|.-.|...||+.|.++|.+|..-|..++++||.+- +.++ +.|+
T Consensus 252 ~DKflllyallKL~L-I~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~--Ydiv-IAtD~ 327 (569)
T KOG0346|consen 252 EDKFLLLYALLKLRL-IRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGL--YDIV-IATDD 327 (569)
T ss_pred chhHHHHHHHHHHHH-hcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcc--eeEE-EEccC
Confidence 468887777775422 3468999999999988999999999999999999999999999999999853 4454 4444
Q ss_pred ----------------------------------ccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEE
Q psy7773 247 ----------------------------------AGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 291 (1281)
Q Consensus 247 ----------------------------------~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~ 291 (1281)
..+.||+++..+.|++||.|-++..|.+|+||..|-|.+-.+.-|
T Consensus 328 s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSf 406 (569)
T KOG0346|consen 328 SADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSF 406 (569)
T ss_pred ccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEE
Confidence 135899999999999999999999999999999999886654443
No 244
>KOG0350|consensus
Probab=98.48 E-value=4.5e-07 Score=103.11 Aligned_cols=129 Identities=19% Similarity=0.303 Sum_probs=101.9
Q ss_pred HHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHH----hCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecccc
Q psy7773 173 LLDRILPKFKETKHRVLMFCQMTQLMTILEDYFI----WRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAG 248 (1281)
Q Consensus 173 ~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~----~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~ 248 (1281)
.+..++.. ....++|+|+...+....|...|. ..++.+..++|..+...|.+++.+|+.++. .| |++++++
T Consensus 419 ~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i--~v-LIcSD~l 493 (620)
T KOG0350|consen 419 AVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDI--NV-LICSDAL 493 (620)
T ss_pred hHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCc--eE-EEehhhh
Confidence 33444433 356799999999998888877776 346677779999999999999999998654 45 6777999
Q ss_pred ccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhc
Q psy7773 249 GLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYK 310 (1281)
Q Consensus 249 ~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K 310 (1281)
++||++-..+.||+||||-.-..|.+|+||..|.||. -++|.+.... +.+.|.....|
T Consensus 494 aRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~--G~a~tll~~~--~~r~F~klL~~ 551 (620)
T KOG0350|consen 494 ARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQD--GYAITLLDKH--EKRLFSKLLKK 551 (620)
T ss_pred hcCCcccccceEeecCCCchhhHHHHhhcccccccCC--ceEEEeeccc--cchHHHHHHHH
Confidence 9999999999999999999999999999999999995 4666666554 34444444444
No 245
>KOG0334|consensus
Probab=98.47 E-value=6.4e-07 Score=111.13 Aligned_cols=124 Identities=19% Similarity=0.243 Sum_probs=111.5
Q ss_pred cCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecc
Q psy7773 167 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 246 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~ 246 (1281)
.+.|+.-|.++|....+ ..++|||++...-++.|...|...|+.+..+||+.++.+|...+.+|.++.. .||+.|.
T Consensus 596 e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~---~LLvaTs 671 (997)
T KOG0334|consen 596 ENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVV---NLLVATS 671 (997)
T ss_pred chHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCc---eEEEehh
Confidence 46899999999988766 5699999999999999999999999999999999999999999999998554 4788899
Q ss_pred ccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEec
Q psy7773 247 AGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITV 296 (1281)
Q Consensus 247 ~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~ 296 (1281)
+++.||++..-..||+||.|-....|..|.||.+|.|.+- ..|.|+..
T Consensus 672 vvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 672 VVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred hhhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 9999999999999999999999999999999999999876 55555655
No 246
>KOG0926|consensus
Probab=98.46 E-value=1.9e-05 Score=94.43 Aligned_cols=144 Identities=16% Similarity=0.234 Sum_probs=80.7
Q ss_pred HHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHH---hcCCCCCEEEEeCCccH-----HHHHHHHHHHCCCCcE-EEEeC
Q psy7773 558 VSLYNNNLNGILADEMGLGKTVQTIALLTYLME---KKKNLGPYLVIVPLSTL-----SNWVLEFEKWAPSANV-VAYKG 628 (1281)
Q Consensus 558 ~~~~~~~~~gILademGlGKTi~ai~ll~~l~~---~~~~~~~~LIV~P~s~l-----~~W~~E~~~~~p~~~~-~~~~g 628 (1281)
+...+.+.-.|+|.+||+|||.|.=-|+...-. .....|-+=|.-|..+. ..-..|+..+...+.+ +-|.|
T Consensus 265 MEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd~ 344 (1172)
T KOG0926|consen 265 MEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFDG 344 (1172)
T ss_pred HHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEecc
Confidence 445566777899999999999998777654321 11122334455564433 2234455553322222 44555
Q ss_pred CHHHHHHHHhhhccCCccEEEechHHHhhccc-ccccCceeEEEEeCCccccccchH----HHHHHH---hhhc------
Q psy7773 629 SPLARRALQGRMKNSKFNVLLTTYEFIIKDKS-VLSKIQWKCMIIDEGHRMKNHHCK----LTQTLN---TFYN------ 694 (1281)
Q Consensus 629 ~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~-~l~~~~w~~vIvDEaHr~kn~~s~----~~~~l~---~~~~------ 694 (1281)
+. ...-.|-++|-+.|.+... -|--..+..|||||||.=.-.+.- +++++. .+++
T Consensus 345 ti-----------~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~k 413 (1172)
T KOG0926|consen 345 TI-----------GEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIK 413 (1172)
T ss_pred cc-----------CCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccC
Confidence 42 2345688899999887633 222336899999999974322222 222221 1111
Q ss_pred cCcEEEeecCCCCCChhH
Q psy7773 695 SSHRVLLTGTPLQNKLPE 712 (1281)
Q Consensus 695 ~~~rllLTgTPl~n~~~e 712 (1281)
.-..++||||---.++.+
T Consensus 414 pLKLIIMSATLRVsDFte 431 (1172)
T KOG0926|consen 414 PLKLIIMSATLRVSDFTE 431 (1172)
T ss_pred ceeEEEEeeeEEeccccc
Confidence 234578999965444433
No 247
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.44 E-value=6.9e-06 Score=103.54 Aligned_cols=110 Identities=18% Similarity=0.193 Sum_probs=77.8
Q ss_pred CCeEEEEechHHHHHHHHHHHHH----CCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEE
Q psy7773 888 KHRVLMFCQMTQLMTILEDYFIW----RDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTV 963 (1281)
Q Consensus 888 ~~kvLIFsq~~~~ld~L~~~L~~----~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~V 963 (1281)
..-+|||-.-....+.....|.. ..+.++=++|.++.++..++ |+....+.+-+++||.++..+|.+.+...|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 34599999888888877777776 34678889999999998875 543333333258999999999999999888
Q ss_pred EE--------eCCCC----------ChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHH
Q psy7773 964 II--------FDSDW----------NPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVE 1003 (1281)
Q Consensus 964 I~--------~D~~w----------np~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiE 1003 (1281)
|= ||+-- +-+.-.||-|||+| +.+-..|||.+++..+
T Consensus 336 IDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR---~~pGicyRLyse~~~~ 390 (845)
T COG1643 336 IDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGR---TGPGICYRLYSEEDFL 390 (845)
T ss_pred ecCCcccccccccccCceeeeEEEechhhhhhhcccccc---CCCceEEEecCHHHHH
Confidence 73 33322 12334465565555 5666889999875544
No 248
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.43 E-value=2e-06 Score=108.56 Aligned_cols=169 Identities=19% Similarity=0.216 Sum_probs=102.2
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHH---------HHHHHCCC--CcEEEEeCCH--
Q psy7773 565 LNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVL---------EFEKWAPS--ANVVAYKGSP-- 630 (1281)
Q Consensus 565 ~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~---------E~~~~~p~--~~~~~~~g~~-- 630 (1281)
.+..+..+||+|||.+++.+|.+|....+ ...+|||||...+ ..... -|...+++ ..+.+|....
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~-~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYG-LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 45678899999999999999999875544 4789999997544 22221 22333333 3445555432
Q ss_pred -HHH----HHHHhhhc-----cCCccEEEechHHHhhccc--c------ccc--Cce-------eEEEEeCCccccccch
Q psy7773 631 -LAR----RALQGRMK-----NSKFNVLLTTYEFIIKDKS--V------LSK--IQW-------KCMIIDEGHRMKNHHC 683 (1281)
Q Consensus 631 -~~r----~~~~~~~~-----~~~~~vvItTye~l~~~~~--~------l~~--~~w-------~~vIvDEaHr~kn~~s 683 (1281)
..| ..+..... ....+|+|+|.+.|.+... . +.. ..| -+||+||+|++... .
T Consensus 139 k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~-~ 217 (986)
T PRK15483 139 KSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD-N 217 (986)
T ss_pred ccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc-h
Confidence 011 11111111 2257899999999976421 1 111 122 38999999999663 3
Q ss_pred HHHHHHHhhhccCcEEEeecCCCC-------C--ChhHHHHHHhhhcCCCCCChhHHHHHhcccccC
Q psy7773 684 KLTQTLNTFYNSSHRVLLTGTPLQ-------N--KLPELWALLNFLLPSIFKSCSTFEQWFNAPFAT 741 (1281)
Q Consensus 684 ~~~~~l~~~~~~~~rllLTgTPl~-------n--~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~ 741 (1281)
+.+.++..+ +..+.|..|||--. | ...+.++++.- +.+.+.|.+...+-+..
T Consensus 218 k~~~~i~~l-npl~~lrysAT~~~~~~~~g~~~~~~~d~~NlvY~-----LdavdAyn~~LVK~I~V 278 (986)
T PRK15483 218 KFYQAIEAL-KPQMIIRFGATFPDITEGKGKNKCTRKDYYNLQFD-----LNAVDSFNDGLVKGVDI 278 (986)
T ss_pred HHHHHHHhc-CcccEEEEeeecCCccccccccccccccccCceee-----cCHHHHHHhCCcceEEE
Confidence 456777665 77788899999543 1 11124444433 35677787776655443
No 249
>PRK02362 ski2-like helicase; Provisional
Probab=98.43 E-value=1.1e-06 Score=113.41 Aligned_cols=111 Identities=19% Similarity=0.083 Sum_probs=87.3
Q ss_pred hhCCCeEEEEeccHHHHHHHHHHHHhC------------------------------------CCcEEEecCCCCHHHHH
Q psy7773 182 KETKHRVLMFCQMTQLMTILEDYFIWR------------------------------------DFSYLRLDGTTKSEDRG 225 (1281)
Q Consensus 182 ~~~~~kvlIFs~~~~~~~~l~~~l~~~------------------------------------g~~~~~~~g~~~~~~R~ 225 (1281)
...+.++||||+.+.....+...|... ..++..+||+++..+|.
T Consensus 240 ~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~ 319 (737)
T PRK02362 240 LEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRE 319 (737)
T ss_pred HHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHH
Confidence 346789999999987766665555422 13577889999999999
Q ss_pred HHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEE----eC-----CCCCcchhhHHhHhhhhcCCCCeEEEEEEEe
Q psy7773 226 ELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVII----FD-----SDWNPHQDLQAQDRAHRIGQKNEVRVLRLIT 295 (1281)
Q Consensus 226 ~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~----~d-----~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~ 295 (1281)
.+.+.|+++. ++ +|++|.+++.|+|+....+||. || .|.++..+.|++||++|.|....-.++-++.
T Consensus 320 ~ve~~Fr~G~--i~-VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~ 395 (737)
T PRK02362 320 LVEDAFRDRL--IK-VISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAK 395 (737)
T ss_pred HHHHHHHcCC--Ce-EEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEec
Confidence 9999999854 44 5888899999999998888876 77 5778899999999999999865444444443
No 250
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=98.42 E-value=1.2e-06 Score=116.50 Aligned_cols=96 Identities=20% Similarity=0.182 Sum_probs=84.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhCC---------------------------------CcEEEecCCCCHHHHHHHHHH
Q psy7773 184 TKHRVLMFCQMTQLMTILEDYFIWRD---------------------------------FSYLRLDGTTKSEDRGELLRK 230 (1281)
Q Consensus 184 ~~~kvlIFs~~~~~~~~l~~~l~~~g---------------------------------~~~~~~~g~~~~~~R~~~i~~ 230 (1281)
.+.++||||+.+...+.|...|.... +.+..+||+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 46789999999999998888886531 124578899999999999999
Q ss_pred hcCCCCCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhc
Q psy7773 231 FNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRI 282 (1281)
Q Consensus 231 F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~ 282 (1281)
|+++.- + +|++|.+++.|||+...++||+|+.|.+.+.+.||+||++|.
T Consensus 323 fK~G~L--r-vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSGEL--R-CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhCCc--e-EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 998654 3 588889999999999999999999999999999999999996
No 251
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.42 E-value=1.9e-06 Score=84.44 Aligned_cols=132 Identities=16% Similarity=0.118 Sum_probs=69.9
Q ss_pred CCCCeEEecCCCCCHHHHHHHHH-HHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCcEEEEeCCHHHHHHHHhhhc
Q psy7773 563 NNLNGILADEMGLGKTVQTIALL-TYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSANVVAYKGSPLARRALQGRMK 641 (1281)
Q Consensus 563 ~~~~gILademGlGKTi~ai~ll-~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~ 641 (1281)
++.-.+|-.-+|+|||-.++.-+ ...+ ...+++||+.|+.++.. |+.+...+..+ .+..+...+ ..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i---~~~~rvLvL~PTRvva~---em~~aL~~~~~-~~~t~~~~~------~~ 69 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAI---KRRLRVLVLAPTRVVAE---EMYEALKGLPV-RFHTNARMR------TH 69 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHH---HTT--EEEEESSHHHHH---HHHHHTTTSSE-EEESTTSS---------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHH---HccCeEEEecccHHHHH---HHHHHHhcCCc-ccCceeeec------cc
Confidence 34445777889999999876433 3333 34469999999988743 33333334442 222221111 12
Q ss_pred cCCccEEEechHHHhhc-ccccccCceeEEEEeCCccccccchHHHHHHHhhhcc--CcEEEeecCCCC
Q psy7773 642 NSKFNVLLTTYEFIIKD-KSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNS--SHRVLLTGTPLQ 707 (1281)
Q Consensus 642 ~~~~~vvItTye~l~~~-~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~--~~rllLTgTPl~ 707 (1281)
.+...|-++||.++... .......+|++||+||||-.-..+-...-.+..+... ...++|||||--
T Consensus 70 ~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 70 FGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAESGEAKVIFMTATPPG 138 (148)
T ss_dssp -SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT
T ss_pred cCCCcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhccCeeEEEEeCCCCC
Confidence 35567888888887653 2233445899999999998543322222223332222 367899999953
No 252
>KOG0920|consensus
Probab=98.39 E-value=3.5e-05 Score=96.87 Aligned_cols=163 Identities=20% Similarity=0.297 Sum_probs=103.3
Q ss_pred chHHHHHHHhhhhhh--cCCeEEEEechHHHHHHHHHHHHH----CC---CcEEEEeCCCChHHHHHHHHhhcCCCCCeE
Q psy7773 872 GKFELLDRILPKFKE--TKHRVLMFCQMTQLMTILEDYFIW----RD---FSYLRLDGTTKSEDRGELLRKFNEPESKYF 942 (1281)
Q Consensus 872 ~K~~~L~~lL~~~~~--~~~kvLIFsq~~~~ld~L~~~L~~----~g---~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~ 942 (1281)
-...++..++..+.. ....||||-.-..-+..+...|.. .. +-...+|++++..+.+.+ |+.+..+++
T Consensus 395 id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~R 471 (924)
T KOG0920|consen 395 IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTR 471 (924)
T ss_pred ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcc
Confidence 455566666655543 245799999988877777777753 22 456679999999877765 555555555
Q ss_pred EEEEeccccccccCcccCCEEEE--------eCCCCC----------hhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHH
Q psy7773 943 IFLLSTRAGGLGLNLQAADTVII--------FDSDWN----------PHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEE 1004 (1281)
Q Consensus 943 v~LlsT~agg~GlNL~~ad~VI~--------~D~~wn----------p~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe 1004 (1281)
=++++|..+..+|.+.++-.||- ||+--| -++-.||.|||+| ..+-.+|+|.+..-.+-
T Consensus 472 KIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 472 KIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRSRYEK 548 (924)
T ss_pred hhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechhhhhh
Confidence 57999999999999998776663 454432 2445577777776 56668899998765444
Q ss_pred HHHH---HHHHHHHHHHHHHhcCcCCCCCChhhHHHHHHHHhc
Q psy7773 1005 RILA---AARYKLNMDEKVIQAGMFDQKSTGSERHEFLQTILH 1044 (1281)
Q Consensus 1005 ~I~~---~~~~K~~l~~~vi~~g~~~~~~~~~~~~~~l~~il~ 1044 (1281)
.+.. -...+..+.+.+++.......+. .++|..++.
T Consensus 549 ~~~~~q~PEilR~pL~~l~L~iK~l~~~~~----~~fLskald 587 (924)
T KOG0920|consen 549 LMLAYQLPEILRTPLEELCLHIKVLEQGSI----KAFLSKALD 587 (924)
T ss_pred cccccCChHHHhChHHHhhheeeeccCCCH----HHHHHHhcC
Confidence 3331 11233444555555443332222 255555553
No 253
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.38 E-value=0.00028 Score=89.45 Aligned_cols=47 Identities=17% Similarity=0.105 Sum_probs=36.0
Q ss_pred eEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCc
Q psy7773 941 YFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNE 990 (1281)
Q Consensus 941 ~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~ 990 (1281)
..+++|||.+...|+|+ ++|.+|.- +-.....+|+.||++|-|+...
T Consensus 838 ~~~i~v~Tqv~E~g~D~-dfd~~~~~--~~~~~sliQ~aGR~~R~~~~~~ 884 (1110)
T TIGR02562 838 HLFIVLATPVEEVGRDH-DYDWAIAD--PSSMRSIIQLAGRVNRHRLEKV 884 (1110)
T ss_pred CCeEEEEeeeEEEEecc-cCCeeeec--cCcHHHHHHHhhcccccccCCC
Confidence 44569999999999996 56766642 2245678999999999998653
No 254
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.37 E-value=1.4e-06 Score=111.39 Aligned_cols=110 Identities=15% Similarity=0.152 Sum_probs=93.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEE
Q psy7773 184 TKHRVLMFCQMTQLMTILEDYFIW---RDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTV 260 (1281)
Q Consensus 184 ~~~kvlIFs~~~~~~~~l~~~l~~---~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~v 260 (1281)
.+.++|||+.....++.+...|.. .++.++.+||+++.++|..+++.|.++. .+ +|++|.++..||++..+++|
T Consensus 208 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~--rk-VlVATnIAErgItIp~V~~V 284 (819)
T TIGR01970 208 ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGR--RK-VVLATNIAETSLTIEGIRVV 284 (819)
T ss_pred cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCC--eE-EEEecchHhhcccccCceEE
Confidence 457899999999999999999976 4789999999999999999999998643 33 58899999999999999999
Q ss_pred EEeCCC----CCcch--------------hhHHhHhhhhcCCCCeEEEEEEEeccch
Q psy7773 261 IIFDSD----WNPHQ--------------DLQAQDRAHRIGQKNEVRVLRLITVNSV 299 (1281)
Q Consensus 261 i~~d~~----wnp~~--------------~~Qa~gR~~R~Gq~~~V~v~~l~~~~Ti 299 (1281)
|.++.+ |||.. +.||.||++|. ++=.+|+|+++...
T Consensus 285 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 285 IDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQH 338 (819)
T ss_pred EEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHHH
Confidence 999875 56654 67999999887 35678999987643
No 255
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.37 E-value=4.1e-05 Score=94.39 Aligned_cols=112 Identities=18% Similarity=0.329 Sum_probs=80.5
Q ss_pred hHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccc
Q psy7773 873 KFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGG 952 (1281)
Q Consensus 873 K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg 952 (1281)
...++..++..+ ..|++|.|||.....+++++.++...+.+++.++|..+..+ ++.+. +++| ++=|.+.+
T Consensus 268 ~~tF~~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W~----~~~V-viYT~~it 337 (824)
T PF02399_consen 268 ETTFFSELLARL-NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESWK----KYDV-VIYTPVIT 337 (824)
T ss_pred hhhHHHHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----ccccc----ceeE-EEEeceEE
Confidence 344555555554 56888999999999999999999999999999998777662 23343 3666 66677888
Q ss_pred cccCccc--CCEEEEe--CCCCChhh--hhhHhHhHHhhCCCCceEEEE
Q psy7773 953 LGLNLQA--ADTVIIF--DSDWNPHQ--DLQAQDRAHRIGQKNEVRVLR 995 (1281)
Q Consensus 953 ~GlNL~~--ad~VI~~--D~~wnp~~--~~Qa~gR~~RiGQ~k~V~V~r 995 (1281)
.|+++-. -|.|..| .....|.+ ..|.+||+..++.. ++.||.
T Consensus 338 vG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~~-ei~v~~ 385 (824)
T PF02399_consen 338 VGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLDN-EIYVYI 385 (824)
T ss_pred EEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhccC-eEEEEE
Confidence 8998864 4666666 33444554 69999999998854 444443
No 256
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.36 E-value=9.5e-05 Score=94.27 Aligned_cols=90 Identities=23% Similarity=0.326 Sum_probs=62.6
Q ss_pred HHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHC-CCcEEEEeCCCChHHHHHHHHhhc----CCCCCeEEEEEec
Q psy7773 874 FELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR-DFSYLRLDGTTKSEDRGELLRKFN----EPESKYFIFLLST 948 (1281)
Q Consensus 874 ~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~-g~~~~~l~G~~~~~~R~~~i~~Fn----~~~~~~~v~LlsT 948 (1281)
...+.+.|..+...+.++|||+.+-.+|..+...|... ++. +...|. ..|..+++.|. .++.. +|++|
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~---VL~g~ 592 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGS---VLFGL 592 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCe---EEEEe
Confidence 33455555544445556888888888888888888643 333 444564 25778887775 33333 68888
Q ss_pred cccccccCccc--CCEEEEeCCCC
Q psy7773 949 RAGGLGLNLQA--ADTVIIFDSDW 970 (1281)
Q Consensus 949 ~agg~GlNL~~--ad~VI~~D~~w 970 (1281)
.+..+|||+++ +..||+.-+|+
T Consensus 593 ~sf~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 593 QSFAEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred ccccccccCCCCceEEEEEEcCCC
Confidence 99999999986 78999988776
No 257
>KOG0924|consensus
Probab=98.34 E-value=2.3e-05 Score=92.27 Aligned_cols=94 Identities=20% Similarity=0.282 Sum_probs=65.2
Q ss_pred CCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCC----CCCh-----------hhhh
Q psy7773 912 DFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDS----DWNP-----------HQDL 976 (1281)
Q Consensus 912 g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~----~wnp-----------~~~~ 976 (1281)
++.++-|...++.+-+.++ |+....+++-++++|..+...|.+++.-.||=... -+|| ..-.
T Consensus 597 ~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 5667777777777655544 66555667767999999999999999888874221 1233 3334
Q ss_pred hHhHhHHhhCCCCceEEEEEEeCCCHHHHHHH
Q psy7773 977 QAQDRAHRIGQKNEVRVLRLITVNSVEERILA 1008 (1281)
Q Consensus 977 Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~ 1008 (1281)
+|--|++|.|.+.+-..|||.|..+....++.
T Consensus 674 nA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~ 705 (1042)
T KOG0924|consen 674 NADQRAGRAGRTGPGTCYRLYTEDAYKNEMLP 705 (1042)
T ss_pred cchhhccccCCCCCcceeeehhhhHHHhhccc
Confidence 45556666666778889999999877665553
No 258
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.33 E-value=2.6e-05 Score=97.93 Aligned_cols=120 Identities=15% Similarity=0.134 Sum_probs=105.2
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..|+.++...+..+...|..|||||.+....+.|...|...|+++..++|. ..+|+..+..|..+.+. ++++|..
T Consensus 413 ~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~---VtIATNm 487 (830)
T PRK12904 413 KEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGA---VTIATNM 487 (830)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCce---EEEeccc
Confidence 469999999998877889999999999999999999999999999999995 67899999999876554 6889999
Q ss_pred cccCCCCC-C-------------------------------------CCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEE
Q psy7773 248 GGLGLNLQ-A-------------------------------------ADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVR 289 (1281)
Q Consensus 248 ~~~GlnL~-~-------------------------------------a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~ 289 (1281)
+|+|+++. + .=|||.-..+=|--.+.|.-||++|.|..-...
T Consensus 488 AGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~ 567 (830)
T PRK12904 488 AGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSR 567 (830)
T ss_pred ccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCcee
Confidence 99999977 3 237888899999999999999999999976655
Q ss_pred EEE
Q psy7773 290 VLR 292 (1281)
Q Consensus 290 v~~ 292 (1281)
.|-
T Consensus 568 f~l 570 (830)
T PRK12904 568 FYL 570 (830)
T ss_pred EEE
Confidence 554
No 259
>PHA02653 RNA helicase NPH-II; Provisional
Probab=98.31 E-value=3e-06 Score=105.76 Aligned_cols=108 Identities=13% Similarity=0.150 Sum_probs=88.7
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHh-cCCCCCceEEEEeccccccCCCCCCCCEE
Q psy7773 184 TKHRVLMFCQMTQLMTILEDYFIWR--DFSYLRLDGTTKSEDRGELLRKF-NEPESKYFIFLLSTRAGGLGLNLQAADTV 260 (1281)
Q Consensus 184 ~~~kvlIFs~~~~~~~~l~~~l~~~--g~~~~~~~g~~~~~~R~~~i~~F-~~~~~~~~vll~st~~~~~GlnL~~a~~v 260 (1281)
.+..+|||+.....++.+...|... |+.+..+||++++. ++.+..| .++ ..+ +|++|..++.||++...++|
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~g--k~k-ILVATdIAERGIDIp~V~~V 468 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSK--NPS-IIISTPYLESSVTIRNATHV 468 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccC--cee-EEeccChhhccccccCeeEE
Confidence 4568999999999999999999877 79999999999964 5677777 443 333 58999999999999999999
Q ss_pred EEeC---CC---------CCcchhhHHhHhhhhcCCCCeEEEEEEEeccch
Q psy7773 261 IIFD---SD---------WNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSV 299 (1281)
Q Consensus 261 i~~d---~~---------wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Ti 299 (1281)
|.++ .| .+.+.+.||.||++|. ++-.+|+|+++...
T Consensus 469 ID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~ 516 (675)
T PHA02653 469 YDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLL 516 (675)
T ss_pred EECCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHh
Confidence 9997 22 2566788999999887 35788899988765
No 260
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.30 E-value=2.9e-05 Score=97.55 Aligned_cols=129 Identities=16% Similarity=0.150 Sum_probs=111.4
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..|+.++.+.+..+...|..|||||.+....+.|...|...|+++..++|.....+|+.+...|+.+ . ++++|..
T Consensus 427 ~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~---VtIATNm 501 (896)
T PRK13104 427 ADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG--A---VTIATNM 501 (896)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC--c---EEEeccC
Confidence 4689999988888889999999999999999999999999999999999999999999999999974 2 6889999
Q ss_pred cccCCCCC-C-------------------------------------CCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEE
Q psy7773 248 GGLGLNLQ-A-------------------------------------ADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVR 289 (1281)
Q Consensus 248 ~~~GlnL~-~-------------------------------------a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~ 289 (1281)
+|.|+++. + .=|||--+.+=|--.+.|.-||++|.|..-...
T Consensus 502 AGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~ 581 (896)
T PRK13104 502 AGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSR 581 (896)
T ss_pred ccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceE
Confidence 99999976 2 237888899999999999999999999976555
Q ss_pred EEEEEeccchHHHHHHH
Q psy7773 290 VLRLITVNSVEERILAA 306 (1281)
Q Consensus 290 v~~l~~~~Tiee~i~~~ 306 (1281)
.|- |+|..++.+
T Consensus 582 f~l-----SleD~l~~~ 593 (896)
T PRK13104 582 FYL-----SLEDNLMRI 593 (896)
T ss_pred EEE-----EcCcHHHHH
Confidence 554 455555543
No 261
>PRK01172 ski2-like helicase; Provisional
Probab=98.29 E-value=3.7e-06 Score=107.85 Aligned_cols=110 Identities=18% Similarity=0.153 Sum_probs=85.1
Q ss_pred HHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhC-------------------------CCcEEEecCCCCHHHHHHHH
Q psy7773 174 LDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR-------------------------DFSYLRLDGTTKSEDRGELL 228 (1281)
Q Consensus 174 L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~-------------------------g~~~~~~~g~~~~~~R~~~i 228 (1281)
+..++......+.++|||+..+.....+...|... ..++..+||+++.++|..+.
T Consensus 225 ~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve 304 (674)
T PRK01172 225 INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIE 304 (674)
T ss_pred HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHH
Confidence 34455555567889999999988777776666432 12466789999999999999
Q ss_pred HHhcCCCCCceEEEEeccccccCCCCCCCCEEEEeCC---------CCCcchhhHHhHhhhhcCCCCe
Q psy7773 229 RKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDS---------DWNPHQDLQAQDRAHRIGQKNE 287 (1281)
Q Consensus 229 ~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~---------~wnp~~~~Qa~gR~~R~Gq~~~ 287 (1281)
+.|.++. ++ +|++|.+++.|+|+++ .+||+++. ++++..+.|++||++|.|....
T Consensus 305 ~~f~~g~--i~-VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~ 368 (674)
T PRK01172 305 EMFRNRY--IK-VIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQY 368 (674)
T ss_pred HHHHcCC--Ce-EEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCc
Confidence 9999754 33 5888899999999986 57777664 3567788999999999997655
No 262
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=98.25 E-value=3.2e-06 Score=108.41 Aligned_cols=111 Identities=15% Similarity=0.173 Sum_probs=93.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEE
Q psy7773 184 TKHRVLMFCQMTQLMTILEDYFIW---RDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTV 260 (1281)
Q Consensus 184 ~~~kvlIFs~~~~~~~~l~~~l~~---~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~v 260 (1281)
.+..+|||+.....++.+...|.. .++.++.+||+++..+|..++..|.++.. -+|++|..+..||++.++++|
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~r---kVlvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRR---KVVLATNIAETSLTIEGIRLV 287 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCe---EEEEecchHHhcccccCceEE
Confidence 467899999999999999999986 58889999999999999999999976433 368999999999999999999
Q ss_pred EEeCCC----CCcc--------------hhhHHhHhhhhcCCCCeEEEEEEEeccchH
Q psy7773 261 IIFDSD----WNPH--------------QDLQAQDRAHRIGQKNEVRVLRLITVNSVE 300 (1281)
Q Consensus 261 i~~d~~----wnp~--------------~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tie 300 (1281)
|.++.+ |+|. .+.||.||++|. .+=.+|+|+++...+
T Consensus 288 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 288 VDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQAE 342 (812)
T ss_pred EECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHHh
Confidence 997765 4433 477888888887 367899999977543
No 263
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=98.23 E-value=2.2e-06 Score=98.96 Aligned_cols=128 Identities=16% Similarity=0.251 Sum_probs=108.3
Q ss_pred cCcHHHHHHHHHHHhhh----C--CCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceE
Q psy7773 167 TSGKFELLDRILPKFKE----T--KHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFI 240 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~~----~--~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~v 240 (1281)
.+.|+..+..+.+.-.. . ..+.|||+.++.-.+.|..+|...|++...+|++++..+|..+-..|.++.-.
T Consensus 416 e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~--- 492 (830)
T COG1202 416 ESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELA--- 492 (830)
T ss_pred chHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcc---
Confidence 57899999888875432 1 25799999999999999999999999999999999999999999999986543
Q ss_pred EEEeccccccCCCCCCCCEEE---EeCCCC-CcchhhHHhHhhhhcCCCCeEEEEEEEecc
Q psy7773 241 FLLSTRAGGLGLNLQAADTVI---IFDSDW-NPHQDLQAQDRAHRIGQKNEVRVLRLITVN 297 (1281)
Q Consensus 241 ll~st~~~~~GlnL~~a~~vi---~~d~~w-np~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~ 297 (1281)
.+++|.|.|.|+++++..+|+ -+-..| +|..+.|..||++|.|-...-.||-++-.|
T Consensus 493 ~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 493 AVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred eEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 588999999999998665443 245556 899999999999999998878888888776
No 264
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.23 E-value=4.6e-05 Score=95.49 Aligned_cols=128 Identities=14% Similarity=0.168 Sum_probs=110.1
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..|+.++.+-+..+...|..|||||.+....+.|...|...|+++..+++..+..++..+...|+.+. ++++|..
T Consensus 432 ~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~-----VtIATnm 506 (908)
T PRK13107 432 DEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA-----VTIATNM 506 (908)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc-----EEEecCC
Confidence 57999998888888899999999999999999999999999999999999999999999999998742 6889999
Q ss_pred cccCCCCC-C------------------------------------CCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEE
Q psy7773 248 GGLGLNLQ-A------------------------------------ADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRV 290 (1281)
Q Consensus 248 ~~~GlnL~-~------------------------------------a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v 290 (1281)
+|.|+++. + .=|||.-+.+=|--.+.|.-||++|.|..-....
T Consensus 507 AGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f 586 (908)
T PRK13107 507 AGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRF 586 (908)
T ss_pred cCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeE
Confidence 99999976 2 2378888999999999999999999999655444
Q ss_pred EEEEeccchHHHHHH
Q psy7773 291 LRLITVNSVEERILA 305 (1281)
Q Consensus 291 ~~l~~~~Tiee~i~~ 305 (1281)
|- |+|..++.
T Consensus 587 ~l-----SlED~L~r 596 (908)
T PRK13107 587 YL-----SMEDSLMR 596 (908)
T ss_pred EE-----EeCcHHHH
Confidence 43 44555543
No 265
>PRK00254 ski2-like helicase; Provisional
Probab=98.17 E-value=8.1e-06 Score=105.24 Aligned_cols=121 Identities=14% Similarity=0.011 Sum_probs=86.0
Q ss_pred HHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHh---------------------------------CCCcEEEecCCCCH
Q psy7773 175 DRILPKFKETKHRVLMFCQMTQLMTILEDYFIW---------------------------------RDFSYLRLDGTTKS 221 (1281)
Q Consensus 175 ~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~---------------------------------~g~~~~~~~g~~~~ 221 (1281)
..++......+.++||||..+.....+...|.. .+.++..+||+++.
T Consensus 228 ~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~ 307 (720)
T PRK00254 228 ESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGR 307 (720)
T ss_pred HHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCH
Confidence 344444445688999999988665444333311 12357889999999
Q ss_pred HHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEE-------eCCCCC-cchhhHHhHhhhhcCCCCeEEEEEE
Q psy7773 222 EDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVII-------FDSDWN-PHQDLQAQDRAHRIGQKNEVRVLRL 293 (1281)
Q Consensus 222 ~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~-------~d~~wn-p~~~~Qa~gR~~R~Gq~~~V~v~~l 293 (1281)
++|..+.+.|+++. ++ +|++|.+++.|+|+...++||. +..++- ...+.|++||++|.|....-.++-+
T Consensus 308 ~eR~~ve~~F~~G~--i~-VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~ 384 (720)
T PRK00254 308 TERVLIEDAFREGL--IK-VITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIV 384 (720)
T ss_pred HHHHHHHHHHHCCC--Ce-EEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEE
Confidence 99999999999864 44 5888899999999998877774 333332 3578999999999987665555555
Q ss_pred Eeccc
Q psy7773 294 ITVNS 298 (1281)
Q Consensus 294 ~~~~T 298 (1281)
+..+.
T Consensus 385 ~~~~~ 389 (720)
T PRK00254 385 ATTEE 389 (720)
T ss_pred ecCcc
Confidence 55443
No 266
>KOG0349|consensus
Probab=98.15 E-value=4.3e-06 Score=93.11 Aligned_cols=96 Identities=22% Similarity=0.339 Sum_probs=86.7
Q ss_pred CCeEEEEeccHHHHHHHHHHHHhCC---CcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEE
Q psy7773 185 KHRVLMFCQMTQLMTILEDYFIWRD---FSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVI 261 (1281)
Q Consensus 185 ~~kvlIFs~~~~~~~~l~~~l~~~g---~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi 261 (1281)
-.|.||||....--+-|+.+|...| +.|+-++|...+.+|.+-++.|...+.+ ||++|++++.||++++...+|
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvk---flictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVK---FLICTDVAARGLDITGLPFMI 581 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeE---EEEEehhhhccccccCCceEE
Confidence 4689999999999999999998874 5789999999999999999999986654 789999999999999999999
Q ss_pred EeCCCCCcchhhHHhHhhhhcC
Q psy7773 262 IFDSDWNPHQDLQAQDRAHRIG 283 (1281)
Q Consensus 262 ~~d~~wnp~~~~Qa~gR~~R~G 283 (1281)
+..+|-..+.|..||||++|.-
T Consensus 582 nvtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred EEecCcccchhhhhhhccchhh
Confidence 9999999999999999988753
No 267
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.13 E-value=2.2e-05 Score=89.27 Aligned_cols=73 Identities=16% Similarity=0.123 Sum_probs=52.4
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCC---CCCEEEEeCCccH-HHHHHHHHH
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKN---LGPYLVIVPLSTL-SNWVLEFEK 616 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~---~~~~LIV~P~s~l-~~W~~E~~~ 616 (1281)
.++||.|++-...+...+.++.++|+-.+||+|||+.++..+.......+. ..++++++++..+ .+-..++++
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 357999999999888888899999999999999999988766433323222 2367777775443 443444544
No 268
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.13 E-value=2.2e-05 Score=89.27 Aligned_cols=73 Identities=16% Similarity=0.123 Sum_probs=52.4
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCC---CCCEEEEeCCccH-HHHHHHHHH
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKN---LGPYLVIVPLSTL-SNWVLEFEK 616 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~---~~~~LIV~P~s~l-~~W~~E~~~ 616 (1281)
.++||.|++-...+...+.++.++|+-.+||+|||+.++..+.......+. ..++++++++..+ .+-..++++
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 357999999999888888899999999999999999988766433323222 2367777775443 443444544
No 269
>KOG0923|consensus
Probab=98.08 E-value=8.4e-05 Score=87.63 Aligned_cols=103 Identities=21% Similarity=0.286 Sum_probs=66.1
Q ss_pred EEEEechHHHHHHHHHHH----HHCC-----CcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCC
Q psy7773 891 VLMFCQMTQLMTILEDYF----IWRD-----FSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAAD 961 (1281)
Q Consensus 891 vLIFsq~~~~ld~L~~~L----~~~g-----~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad 961 (1281)
+|||---..-+......| ...| +-++-|+.+.+.+.+.++ |.....+++-++|+|..+...|.+.+..
T Consensus 476 ILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdgI~ 552 (902)
T KOG0923|consen 476 ILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDGIK 552 (902)
T ss_pred EEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecCeE
Confidence 677765554443333333 3223 345668889998877665 4332334555699999999999999888
Q ss_pred EEEEeCCC------CCh--------------hhhhhHhHhHHhhCCCCceEEEEEEeCCC
Q psy7773 962 TVIIFDSD------WNP--------------HQDLQAQDRAHRIGQKNEVRVLRLITVNS 1001 (1281)
Q Consensus 962 ~VI~~D~~------wnp--------------~~~~Qa~gR~~RiGQ~k~V~V~rli~~~t 1001 (1281)
.|| ||- +|| +.-.||.|||+|.|-. ..|||.|..+
T Consensus 553 yVi--DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPG---KCfRLYt~~a 607 (902)
T KOG0923|consen 553 YVI--DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPG---KCFRLYTAWA 607 (902)
T ss_pred EEe--cCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCC---ceEEeechhh
Confidence 886 443 333 4456888888777665 4778877443
No 270
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.07 E-value=7.1e-06 Score=90.42 Aligned_cols=92 Identities=21% Similarity=0.293 Sum_probs=77.3
Q ss_pred HHHHhhcCCCCCeEEEEEeccccccccCcccC--------CEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCC
Q psy7773 929 ELLRKFNEPESKYFIFLLSTRAGGLGLNLQAA--------DTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVN 1000 (1281)
Q Consensus 929 ~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~a--------d~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~ 1000 (1281)
...+.|+++... | +|-++|||.||.||+- ..-|.+++||+....+|..||+||-||..++.+..+++.-
T Consensus 52 ~e~~~F~~g~k~--v-~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDGEKD--V-AIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhCCCce--E-EEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 456799986543 4 4446999999999952 2467899999999999999999999999998877888888
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhc
Q psy7773 1001 SVEERILAAARYKLNMDEKVIQA 1023 (1281)
Q Consensus 1001 tiEe~I~~~~~~K~~l~~~vi~~ 1023 (1281)
..|.+......+|+.-..+...+
T Consensus 129 ~gE~Rfas~va~rL~sLgAlt~g 151 (278)
T PF13871_consen 129 PGERRFASTVARRLESLGALTRG 151 (278)
T ss_pred HHHHHHHHHHHHHHhhccccccC
Confidence 89999999999999988877654
No 271
>KOG0337|consensus
Probab=98.06 E-value=6.9e-06 Score=91.90 Aligned_cols=128 Identities=18% Similarity=0.167 Sum_probs=111.8
Q ss_pred cccCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEe
Q psy7773 165 YRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLS 244 (1281)
Q Consensus 165 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~s 244 (1281)
.....|..+|..++..... .+..+||+.....++++...|...|+.+..+.|++.+..|..-+.+|+.+... +|+.
T Consensus 242 ~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~---~lvv 317 (529)
T KOG0337|consen 242 VRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTS---ILVV 317 (529)
T ss_pred eccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccc---eEEE
Confidence 3456788888888876543 35789999999999999999999999999999999999999999999986654 6888
Q ss_pred ccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccc
Q psy7773 245 TRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNS 298 (1281)
Q Consensus 245 t~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~T 298 (1281)
|++++.|++...-+.||+||.|-.+..+..|+||+.|.|.+ -..|-+|+.+-
T Consensus 318 TdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrt--g~aYs~V~~~~ 369 (529)
T KOG0337|consen 318 TDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRT--GRAYSLVASTD 369 (529)
T ss_pred ehhhhccCCCccccccccccCCCCCceEEEEecchhhcccc--ceEEEEEeccc
Confidence 99999999999999999999999999999999999999974 56677776653
No 272
>KOG0953|consensus
Probab=98.02 E-value=5.1e-05 Score=87.94 Aligned_cols=114 Identities=21% Similarity=0.247 Sum_probs=86.5
Q ss_pred hHHHHHHHhhhhh--hcCCeEEEEechHHHHHHHHHHHHHCCCc-EEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEecc
Q psy7773 873 KFELLDRILPKFK--ETKHRVLMFCQMTQLMTILEDYFIWRDFS-YLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 949 (1281)
Q Consensus 873 K~~~L~~lL~~~~--~~~~kvLIFsq~~~~ld~L~~~L~~~g~~-~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~ 949 (1281)
.+.+...++..+. .+|+=|+-||...- . -+...+..+|.. ++.|.|+.+++.|.+--..||+++++|.| |++|+
T Consensus 341 pL~v~~~~~~sl~nlk~GDCvV~FSkk~I-~-~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dv-lVAsD 417 (700)
T KOG0953|consen 341 PLVVEETALGSLSNLKPGDCVVAFSKKDI-F-TVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDV-LVASD 417 (700)
T ss_pred cceehhhhhhhhccCCCCCeEEEeehhhH-H-HHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccce-EEeec
Confidence 3444444444443 35776666765432 2 233445555554 99999999999999999999999999987 99999
Q ss_pred ccccccCcccCCEEEEeCCC---------CChhhhhhHhHhHHhhCCCCc
Q psy7773 950 AGGLGLNLQAADTVIIFDSD---------WNPHQDLQAQDRAHRIGQKNE 990 (1281)
Q Consensus 950 agg~GlNL~~ad~VI~~D~~---------wnp~~~~Qa~gR~~RiGQ~k~ 990 (1281)
|.|.|||| ..++||+++.- -...+..|--|||+|.|.+-+
T Consensus 418 AIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~ 466 (700)
T KOG0953|consen 418 AIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYP 466 (700)
T ss_pred cccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCc
Confidence 99999998 68899999864 456788899999999998765
No 273
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=97.97 E-value=3.7e-05 Score=101.46 Aligned_cols=106 Identities=12% Similarity=0.238 Sum_probs=87.0
Q ss_pred CCeEEEEeccHHHHHHHHHHHHhC------CC---cEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCC
Q psy7773 185 KHRVLMFCQMTQLMTILEDYFIWR------DF---SYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQ 255 (1281)
Q Consensus 185 ~~kvlIFs~~~~~~~~l~~~l~~~------g~---~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~ 255 (1281)
+.|+||||......+.+...|... ++ .+..++|+++ ++..++++|.++. ...++++.+..++|++..
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~--~p~IlVsvdmL~TG~DvP 773 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNER--LPNIVVTVDLLTTGIDVP 773 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCC--CCeEEEEecccccCCCcc
Confidence 479999999998888777766542 22 4567899886 5788999998744 335788999999999999
Q ss_pred CCCEEEEeCCCCCcchhhHHhHhhhhcCC---CCeEEEEEEE
Q psy7773 256 AADTVIIFDSDWNPHQDLQAQDRAHRIGQ---KNEVRVLRLI 294 (1281)
Q Consensus 256 ~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq---~~~V~v~~l~ 294 (1281)
.+++||++.++-++..+.|++||+.|..- +....||.++
T Consensus 774 ~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 774 SICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred cccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 99999999999999999999999999865 4457888754
No 274
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=97.93 E-value=3.1e-05 Score=101.49 Aligned_cols=109 Identities=17% Similarity=0.166 Sum_probs=88.6
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhCCCc---EEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEE
Q psy7773 184 TKHRVLMFCQMTQLMTILEDYFIWRDFS---YLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTV 260 (1281)
Q Consensus 184 ~~~kvlIFs~~~~~~~~l~~~l~~~g~~---~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~v 260 (1281)
....+|||+.....++.+...|...|++ +..++|+++.++|..++..+ +.. -+|++|.++..||++.+.++|
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~----g~r-kIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH----SGR-RIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc----CCe-eEEEeccHHhhccccCcceEE
Confidence 4578999999999999999999988775 56799999999999887653 223 368999999999999999999
Q ss_pred EEeC---------------CCCCc---chhhHHhHhhhhcCCCCeEEEEEEEeccchH
Q psy7773 261 IIFD---------------SDWNP---HQDLQAQDRAHRIGQKNEVRVLRLITVNSVE 300 (1281)
Q Consensus 261 i~~d---------------~~wnp---~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tie 300 (1281)
|.++ ++-.| +.+.||.||++|.+ +=.+|+|++...++
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte~d~~ 414 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSEDDFL 414 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCHHHHH
Confidence 9975 33333 57889999999983 56688999876544
No 275
>KOG0953|consensus
Probab=97.91 E-value=5.1e-05 Score=87.97 Aligned_cols=114 Identities=21% Similarity=0.249 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhh--hCCCeEEEEeccHHHHHHHHHHHHhCCCc-EEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecc
Q psy7773 170 KFELLDRILPKFK--ETKHRVLMFCQMTQLMTILEDYFIWRDFS-YLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 246 (1281)
Q Consensus 170 K~~~L~~ll~~~~--~~~~kvlIFs~~~~~~~~l~~~l~~~g~~-~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~ 246 (1281)
.+.....++..+. ..|.=||-||. .-+=.+...+..+|.. ++.|.|+.|++-|.+....||++.+.+.| |+.++
T Consensus 341 pL~v~~~~~~sl~nlk~GDCvV~FSk--k~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dv-lVAsD 417 (700)
T KOG0953|consen 341 PLVVEETALGSLSNLKPGDCVVAFSK--KDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDV-LVASD 417 (700)
T ss_pred cceehhhhhhhhccCCCCCeEEEeeh--hhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccce-EEeec
Confidence 3444444444332 46777888885 3334455666677665 99999999999999999999998888877 55569
Q ss_pred ccccCCCCCCCCEEEEeCCC---------CCcchhhHHhHhhhhcCCCCe
Q psy7773 247 AGGLGLNLQAADTVIIFDSD---------WNPHQDLQAQDRAHRIGQKNE 287 (1281)
Q Consensus 247 ~~~~GlnL~~a~~vi~~d~~---------wnp~~~~Qa~gR~~R~Gq~~~ 287 (1281)
|.|.||||. ..+|||+++. -.-+...|.-||++|.|.+-+
T Consensus 418 AIGMGLNL~-IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~ 466 (700)
T KOG0953|consen 418 AIGMGLNLN-IRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYP 466 (700)
T ss_pred ccccccccc-eeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCc
Confidence 999999996 5678888765 234556699999999998755
No 276
>PRK09694 helicase Cas3; Provisional
Probab=97.90 E-value=5.6e-05 Score=96.98 Aligned_cols=102 Identities=17% Similarity=0.140 Sum_probs=82.3
Q ss_pred hhhCCCeEEEEeccHHHHHHHHHHHHhCC---CcEEEecCCCCHHHH----HHHHHHh-cCCCCCceEEEEeccccccCC
Q psy7773 181 FKETKHRVLMFCQMTQLMTILEDYFIWRD---FSYLRLDGTTKSEDR----GELLRKF-NEPESKYFIFLLSTRAGGLGL 252 (1281)
Q Consensus 181 ~~~~~~kvlIFs~~~~~~~~l~~~l~~~g---~~~~~~~g~~~~~~R----~~~i~~F-~~~~~~~~vll~st~~~~~Gl 252 (1281)
....|.+++||++.+..+..+...|...+ +.+..+||.++..+| .++++.| .++......+|++|++...||
T Consensus 556 ~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GL 635 (878)
T PRK09694 556 AANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSL 635 (878)
T ss_pred HHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhhee
Confidence 34578899999999999999999998765 679999999999888 5678899 433221124689999999999
Q ss_pred CCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCC
Q psy7773 253 NLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQK 285 (1281)
Q Consensus 253 nL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~ 285 (1281)
++. ++.+|....| ...+.||+||+||-|..
T Consensus 636 DId-~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 636 DLD-FDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred ecC-CCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 994 6888776555 57899999999999874
No 277
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.89 E-value=5.6e-05 Score=99.46 Aligned_cols=124 Identities=14% Similarity=0.158 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHhh-hCCCeEEEEeccHHHHHHHHHHHHhCCC---cEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEec
Q psy7773 170 KFELLDRILPKFK-ETKHRVLMFCQMTQLMTILEDYFIWRDF---SYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLST 245 (1281)
Q Consensus 170 K~~~L~~ll~~~~-~~~~kvlIFs~~~~~~~~l~~~l~~~g~---~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st 245 (1281)
+...+...+..+. .....+|||+.....++.+...|...++ .+..++|+++.++|..++..+ . .. -+|++|
T Consensus 263 ~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~-~r-kIVLAT 337 (1283)
T TIGR01967 263 QLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---S-GR-RIVLAT 337 (1283)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---C-Cc-eEEEec
Confidence 4455555555443 2457899999999999999999987754 578899999999999885543 2 22 368899
Q ss_pred cccccCCCCCCCCEEEEeCCC-----------------C-CcchhhHHhHhhhhcCCCCeEEEEEEEeccchHH
Q psy7773 246 RAGGLGLNLQAADTVIIFDSD-----------------W-NPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEE 301 (1281)
Q Consensus 246 ~~~~~GlnL~~a~~vi~~d~~-----------------w-np~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee 301 (1281)
.++..||++.+..+||.++.+ | +.+.+.||.||++|.| +=.+|+|++....+.
T Consensus 338 NIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 338 NVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFNS 408 (1283)
T ss_pred cHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHHh
Confidence 999999999999999998732 1 3357899999999997 566899998765543
No 278
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=97.88 E-value=5.1e-05 Score=89.34 Aligned_cols=100 Identities=18% Similarity=0.147 Sum_probs=77.5
Q ss_pred cHHHHHHHHHHHhh-----hCCCeEEEEeccHHHHHHHHHHHHhCC--CcEEEecCCCCHHHHHHHHHHhcCCCCCceEE
Q psy7773 169 GKFELLDRILPKFK-----ETKHRVLMFCQMTQLMTILEDYFIWRD--FSYLRLDGTTKSEDRGELLRKFNEPESKYFIF 241 (1281)
Q Consensus 169 ~K~~~L~~ll~~~~-----~~~~kvlIFs~~~~~~~~l~~~l~~~g--~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vl 241 (1281)
-|...+..++..+. ..+.++|||++....++.+...|...| +.+..++|.++..+|.+.. .. .+
T Consensus 251 ~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~------~~---~i 321 (357)
T TIGR03158 251 FKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM------QF---DI 321 (357)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc------cC---CE
Confidence 45555555554432 256899999999999999999998865 5788999999998887653 22 26
Q ss_pred EEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhh
Q psy7773 242 LLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAH 280 (1281)
Q Consensus 242 l~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~ 280 (1281)
|++|++++.|||+... +|| ++ |-++..|.||+||++
T Consensus 322 LVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 322 LLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 8899999999999864 555 56 668899999999975
No 279
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=97.87 E-value=8.7e-05 Score=93.11 Aligned_cols=134 Identities=19% Similarity=0.145 Sum_probs=107.9
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCC-CcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccc
Q psy7773 171 FELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRD-FSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGG 249 (1281)
Q Consensus 171 ~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g-~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~ 249 (1281)
...+...+..+......+|||++.+.+.+.+...|+..+ .++...||+.+.+.|...-++|.++.- ++ ++||.+..
T Consensus 239 ~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~l--ra-vV~TSSLE 315 (814)
T COG1201 239 WAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGEL--KA-VVATSSLE 315 (814)
T ss_pred hHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCc--eE-EEEccchh
Confidence 344555555656666789999999999999999999887 899999999999999999999998664 44 77889999
Q ss_pred cCCCCCCCCEEEEeCCCCCcchhhHHhHhhhh-cCCCCeEEEEEEEeccchHHHHHHHHhhcc
Q psy7773 250 LGLNLQAADTVIIFDSDWNPHQDLQAQDRAHR-IGQKNEVRVLRLITVNSVEERILAAARYKL 311 (1281)
Q Consensus 250 ~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R-~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~ 311 (1281)
.||+.-..+.||.|..|=.-+...||+||+++ +|. +.-.++++.+ .++.+-.....+.
T Consensus 316 LGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~---~Skg~ii~~~-r~dllE~~vi~~~ 374 (814)
T COG1201 316 LGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGE---VSKGIIIAED-RDDLLECLVLADL 374 (814)
T ss_pred hccccCCceEEEEeCCcHHHHHHhHhccccccccCC---cccEEEEecC-HHHHHHHHHHHHH
Confidence 99999999999999999999999999999864 554 4445556666 5555544444443
No 280
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.85 E-value=0.00014 Score=80.21 Aligned_cols=154 Identities=20% Similarity=0.322 Sum_probs=84.9
Q ss_pred cccHHHHHHHHHHHHhhcCCCC-eEEecCCCCCHHHHHHHHHHHHHH-----hcCCCCCEEEEeCCcc-HHHHHHHHHH-
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLN-GILADEMGLGKTVQTIALLTYLME-----KKKNLGPYLVIVPLST-LSNWVLEFEK- 616 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~-gILademGlGKTi~ai~ll~~l~~-----~~~~~~~~LIV~P~s~-l~~W~~E~~~- 616 (1281)
+|-+.|..++..++. ..+ +++..++|+|||.+..+++..+.. .....+++||++|.+. +.+-...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~~ 76 (236)
T PF13086_consen 1 KLNESQREAIQSALS----SNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKKL 76 (236)
T ss_dssp ---HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHhh
Confidence 477899999976653 333 788999999999888888877742 2456679999999754 4666666665
Q ss_pred -----HCCCCcEEEEeCCH--HHH--------HHHHh-------------------------------------------
Q psy7773 617 -----WAPSANVVAYKGSP--LAR--------RALQG------------------------------------------- 638 (1281)
Q Consensus 617 -----~~p~~~~~~~~g~~--~~r--------~~~~~------------------------------------------- 638 (1281)
..+...++.+.... ... ..+..
T Consensus 77 ~~~~~~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (236)
T PF13086_consen 77 LDEDGKVYKPKIIRLGSEEEKIHEDLQKFSLESKLEQRFESKLKRLREQLEELQQKIRLSELKEEKKKLKKSIKRLRKEL 156 (236)
T ss_dssp -------TT--EEE---GGTTS--TTGGGBHHHHHHTTT-----------THHHCHHHHHHHHHHHCCSSCHHHHHHHHH
T ss_pred ccccccccccchhhhcccccccccccccccccccccccccccchhhhHHHHHHHHhhhhhhhhhhhhhcchhcccccccc
Confidence 11222333222211 000 00000
Q ss_pred --------hhccCCccEEEechHHHhhcccccccC--ceeEEEEeCCccccccchHHHHHHHhhhccCcEEEeecCCCCC
Q psy7773 639 --------RMKNSKFNVLLTTYEFIIKDKSVLSKI--QWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLTGTPLQN 708 (1281)
Q Consensus 639 --------~~~~~~~~vvItTye~l~~~~~~l~~~--~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllLTgTPl~n 708 (1281)
......++||+||..... ...+... .|++||||||-.+.-.. .+.-+..+..+++|-|=|.|-
T Consensus 157 ~~~~~~~~~~~l~~~~vi~~T~~~~~--~~~~~~~~~~~d~vIvDEAsq~~e~~-----~l~~l~~~~~~~vlvGD~~QL 229 (236)
T PF13086_consen 157 EKIREELRRFILKEADVIFTTLSSAA--SPFLSNFKEKFDVVIVDEASQITEPE-----ALIPLSRAPKRIVLVGDPKQL 229 (236)
T ss_dssp HHHHHHHHHHHHHT-SEEEEETCGGG---CCGTT-----SEEEETTGGGS-HHH-----HHHHHTTTBSEEEEEE-TTS-
T ss_pred cccccchhhhhcccccccccccccch--hhHhhhhcccCCEEEEeCCCCcchHH-----HHHHHHHhCCEEEEECChhhc
Confidence 011245789999988773 2334444 79999999998875433 222233455889999988874
Q ss_pred C
Q psy7773 709 K 709 (1281)
Q Consensus 709 ~ 709 (1281)
.
T Consensus 230 p 230 (236)
T PF13086_consen 230 P 230 (236)
T ss_dssp -
T ss_pred C
Confidence 3
No 281
>KOG0351|consensus
Probab=97.79 E-value=5.3e-05 Score=96.92 Aligned_cols=107 Identities=14% Similarity=0.131 Sum_probs=97.8
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEE
Q psy7773 183 ETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVII 262 (1281)
Q Consensus 183 ~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~ 262 (1281)
..+.-.||||..+...+.+...|...|+....||++++..+|+.+-..|..+. ++ +++.|=|.|.|||-....-||+
T Consensus 483 ~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~--~~-VivATVAFGMGIdK~DVR~ViH 559 (941)
T KOG0351|consen 483 HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDK--IR-VIVATVAFGMGIDKPDVRFVIH 559 (941)
T ss_pred CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCC--Ce-EEEEEeeccCCCCCCceeEEEE
Confidence 35677899999999999999999999999999999999999999999999754 44 4788899999999999999999
Q ss_pred eCCCCCcchhhHHhHhhhhcCCCCeEEEEE
Q psy7773 263 FDSDWNPHQDLQAQDRAHRIGQKNEVRVLR 292 (1281)
Q Consensus 263 ~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~ 292 (1281)
|..|=+-.-|-|..||++|.|+...+..|+
T Consensus 560 ~~lPks~E~YYQE~GRAGRDG~~s~C~l~y 589 (941)
T KOG0351|consen 560 YSLPKSFEGYYQEAGRAGRDGLPSSCVLLY 589 (941)
T ss_pred CCCchhHHHHHHhccccCcCCCcceeEEec
Confidence 999999999999999999999988766655
No 282
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.78 E-value=0.0023 Score=79.88 Aligned_cols=114 Identities=17% Similarity=0.149 Sum_probs=90.3
Q ss_pred ccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEecc
Q psy7773 870 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 949 (1281)
Q Consensus 870 ~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~ 949 (1281)
...|+.++..-+......|..|||-+.+......+...|...|++...|+-.-. .|..-+-.+. |..+ .+-++|.
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~A-G~~g--aVTiATN 485 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQA-GQPG--AVTIATN 485 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhc-CCCC--ccccccc
Confidence 457999999999999999999999999999999999999999999988877655 4444443332 2222 2578999
Q ss_pred ccccccCccc-CC----------EEEEeCCCCChhhhhhHhHhHHhhCCC
Q psy7773 950 AGGLGLNLQA-AD----------TVIIFDSDWNPHQDLQAQDRAHRIGQK 988 (1281)
Q Consensus 950 agg~GlNL~~-ad----------~VI~~D~~wnp~~~~Qa~gR~~RiGQ~ 988 (1281)
.+|+|-||.- .+ +||--...-+-..+.|-.||++|.|-.
T Consensus 486 MAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDp 535 (822)
T COG0653 486 MAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDP 535 (822)
T ss_pred cccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCc
Confidence 9999999873 33 466666667777888999999999954
No 283
>KOG0352|consensus
Probab=97.76 E-value=4.6e-05 Score=85.25 Aligned_cols=101 Identities=18% Similarity=0.246 Sum_probs=94.4
Q ss_pred EEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEEeCCCCC
Q psy7773 189 LMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWN 268 (1281)
Q Consensus 189 lIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wn 268 (1281)
||||..+...+.+.-.|...||+..-+|.+....+|..+.+.|-+++.+ +|+.|-+.|.|++-.....||+++++-|
T Consensus 259 IVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P---vI~AT~SFGMGVDKp~VRFViHW~~~qn 335 (641)
T KOG0352|consen 259 IVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP---VIAATVSFGMGVDKPDVRFVIHWSPSQN 335 (641)
T ss_pred EEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC---EEEEEeccccccCCcceeEEEecCchhh
Confidence 9999999999999999999999999999999999999999999886654 5788899999999999999999999999
Q ss_pred cchhhHHhHhhhhcCCCCeEEEEE
Q psy7773 269 PHQDLQAQDRAHRIGQKNEVRVLR 292 (1281)
Q Consensus 269 p~~~~Qa~gR~~R~Gq~~~V~v~~ 292 (1281)
-+-|-|--||++|.|-..=++.|+
T Consensus 336 ~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 336 LAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred hHHHHHhccccccCCCccceeeee
Confidence 999999999999999987788876
No 284
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.75 E-value=5e-05 Score=83.82 Aligned_cols=85 Identities=24% Similarity=0.323 Sum_probs=65.3
Q ss_pred HHHHHhcCCCCCceEEEEeccccccCCCCCCC----C----EEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEecc
Q psy7773 226 ELLRKFNEPESKYFIFLLSTRAGGLGLNLQAA----D----TVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVN 297 (1281)
Q Consensus 226 ~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a----~----~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~ 297 (1281)
.....|+++. ..|+|+| ++||.||+||.- + +-|.+++||+.....|-.||+||-||..+..+..+++.-
T Consensus 52 ~e~~~F~~g~--k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDGE--KDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhCCC--ceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 5567999865 3466665 999999999942 1 346789999999999999999999998875544455555
Q ss_pred chHHHHHHHHhhcccc
Q psy7773 298 SVEERILAAARYKLNM 313 (1281)
Q Consensus 298 Tiee~i~~~~~~K~~l 313 (1281)
..|.+.......++.-
T Consensus 129 ~gE~Rfas~va~rL~s 144 (278)
T PF13871_consen 129 PGERRFASTVARRLES 144 (278)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6677777777777544
No 285
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.70 E-value=0.00072 Score=86.20 Aligned_cols=43 Identities=23% Similarity=0.442 Sum_probs=36.2
Q ss_pred cccCcHHHHHHHHHHHhhhC---------CCeEEEEeccHHHHHHHHHHHHh
Q psy7773 165 YRTSGKFELLDRILPKFKET---------KHRVLMFCQMTQLMTILEDYFIW 207 (1281)
Q Consensus 165 ~~~s~K~~~L~~ll~~~~~~---------~~kvlIFs~~~~~~~~l~~~l~~ 207 (1281)
....||+..|.++|.++... ..+|||||++..+...|.++|..
T Consensus 266 lEe~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 266 LEENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred cccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 35799999999999876543 46899999999999999998865
No 286
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.50 E-value=0.0058 Score=76.51 Aligned_cols=128 Identities=14% Similarity=0.236 Sum_probs=101.1
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..|+.++..-+..+...|..|||.|.+....+.|...|...|+++..++.... +.-..++. +.|..+ -+.++|..
T Consensus 409 ~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~-e~EA~IIa--~AG~~G--aVTIATNM 483 (925)
T PRK12903 409 HAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN-AREAEIIA--KAGQKG--AITIATNM 483 (925)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch-hhHHHHHH--hCCCCC--eEEEeccc
Confidence 47999999888888889999999999999999999999999999999998644 22333444 333333 46888999
Q ss_pred cccCCCCCCCC--------EEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHH
Q psy7773 248 GGLGLNLQAAD--------TVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILA 305 (1281)
Q Consensus 248 ~~~GlnL~~a~--------~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~ 305 (1281)
+|+|-++.-.. |||..+.+=|--.+.|..||++|.|..-....|- |+|..++.
T Consensus 484 AGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~l-----SLeD~L~r 544 (925)
T PRK12903 484 AGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFI-----SLDDQLFR 544 (925)
T ss_pred ccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEE-----ecchHHHH
Confidence 99998877433 8999999999999999999999999976555443 34444443
No 287
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.49 E-value=0.00061 Score=83.57 Aligned_cols=92 Identities=22% Similarity=0.269 Sum_probs=71.9
Q ss_pred HHHHHHHHHhC--CCcEEEecCCCCHHHH--HHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEEeCCC--CC-c-
Q psy7773 198 MTILEDYFIWR--DFSYLRLDGTTKSEDR--GELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSD--WN-P- 269 (1281)
Q Consensus 198 ~~~l~~~l~~~--g~~~~~~~g~~~~~~R--~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~--wn-p- 269 (1281)
.+.+++.|... +.++.++|++++..++ ..+++.|.++..+ +|++|+..+.|+++...+.|+++|.+ .+ |
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~---ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd 347 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKAD---ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPD 347 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCC---EEEeCcccccCCCCCcccEEEEEcCcccccCcc
Confidence 46677777666 7899999999876655 8999999986655 57888999999999999988765444 33 3
Q ss_pred --------chhhHHhHhhhhcCCCCeEEEEE
Q psy7773 270 --------HQDLQAQDRAHRIGQKNEVRVLR 292 (1281)
Q Consensus 270 --------~~~~Qa~gR~~R~Gq~~~V~v~~ 292 (1281)
+.+.|+.||++|.+....|.|..
T Consensus 348 ~ra~E~~~~ll~q~~GRagR~~~~g~viiqt 378 (505)
T TIGR00595 348 FRAAERGFQLLTQVAGRAGRAEDPGQVIIQT 378 (505)
T ss_pred cchHHHHHHHHHHHHhccCCCCCCCEEEEEe
Confidence 46789999999988766665543
No 288
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.44 E-value=0.012 Score=68.94 Aligned_cols=138 Identities=21% Similarity=0.205 Sum_probs=111.4
Q ss_pred cHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecccc
Q psy7773 169 GKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAG 248 (1281)
Q Consensus 169 ~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~ 248 (1281)
+-+.-|..-++...+.+.+++|-+-...+.+-|.++|...|+++..+|.....-+|..++.+.+.|.-+ +|+.....
T Consensus 430 ~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~D---vLVGINLL 506 (663)
T COG0556 430 GQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFD---VLVGINLL 506 (663)
T ss_pred CcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCcc---EEEeehhh
Confidence 334444444444456789999999999999999999999999999999999999999999999986544 46778999
Q ss_pred ccCCCCCCCCEEEEeCCCC-----CcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhc
Q psy7773 249 GLGLNLQAADTVIIFDSDW-----NPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYK 310 (1281)
Q Consensus 249 ~~GlnL~~a~~vi~~d~~w-----np~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K 310 (1281)
-+||+++.++.|.++|-+- +-....|-|||+.|--.-+ |..|-=...+|+...|-+...+.
T Consensus 507 REGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~Gk-vIlYAD~iT~sM~~Ai~ET~RRR 572 (663)
T COG0556 507 REGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGK-VILYADKITDSMQKAIDETERRR 572 (663)
T ss_pred hccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCCe-EEEEchhhhHHHHHHHHHHHHHH
Confidence 9999999999999998764 6678899999999964433 66666566777887776655443
No 289
>PRK09401 reverse gyrase; Reviewed
Probab=97.37 E-value=0.0006 Score=90.89 Aligned_cols=102 Identities=14% Similarity=0.037 Sum_probs=83.2
Q ss_pred cHHHHHHHHHHHhhhCCCeEEEEeccHHH---HHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEe-
Q psy7773 169 GKFELLDRILPKFKETKHRVLMFCQMTQL---MTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLS- 244 (1281)
Q Consensus 169 ~K~~~L~~ll~~~~~~~~kvlIFs~~~~~---~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~s- 244 (1281)
.|...|..++..+ +..+||||+.... ++.|...|...|+++..+||++ .+.+++|.++. +.|||++
T Consensus 315 ~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~--~~VLVata 384 (1176)
T PRK09401 315 DSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGE--VDVLVGVA 384 (1176)
T ss_pred cHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCC--CCEEEEec
Confidence 5777777777654 4579999998666 9999999999999999999999 23459999865 4576665
Q ss_pred --ccccccCCCCCC-CCEEEEeCCCC------CcchhhHHhHhhh
Q psy7773 245 --TRAGGLGLNLQA-ADTVIIFDSDW------NPHQDLQAQDRAH 280 (1281)
Q Consensus 245 --t~~~~~GlnL~~-a~~vi~~d~~w------np~~~~Qa~gR~~ 280 (1281)
|.++++||+++. ..+||||+.|- ....+..++||.-
T Consensus 385 s~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 385 SYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred CCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHH
Confidence 789999999997 89999999997 5566677777776
No 290
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.34 E-value=0.0026 Score=70.63 Aligned_cols=122 Identities=15% Similarity=0.059 Sum_probs=74.6
Q ss_pred ccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH----HHHHHHHHHH
Q psy7773 542 VNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL----SNWVLEFEKW 617 (1281)
Q Consensus 542 ~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l----~~W~~E~~~~ 617 (1281)
.+..|++-|+-|+--| ..|-|+=..||=|||+++..++.... - ...++=||+.+..| .+|...|-.+
T Consensus 74 ~g~~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~l~a~~~A-L--~G~~V~vvT~NdyLA~RD~~~~~~~y~~ 144 (266)
T PF07517_consen 74 LGLRPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAALPAALNA-L--QGKGVHVVTSNDYLAKRDAEEMRPFYEF 144 (266)
T ss_dssp TS----HHHHHHHHHH------HTTSEEEESTTSHHHHHHHHHHHHHH-T--TSS-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cCCcccHHHHhhhhhc------ccceeEEecCCCCcHHHHHHHHHHHH-H--hcCCcEEEeccHHHhhccHHHHHHHHHH
Confidence 4567888888888544 22558888999999999865443332 2 23578888988887 5688888888
Q ss_pred CCCCcEEEEeCCH--HHHHHHHhhhccCCccEEEechHHHhhc---------ccccccCceeEEEEeCCcccc
Q psy7773 618 APSANVVAYKGSP--LARRALQGRMKNSKFNVLLTTYEFIIKD---------KSVLSKIQWKCMIIDEGHRMK 679 (1281)
Q Consensus 618 ~p~~~~~~~~g~~--~~r~~~~~~~~~~~~~vvItTye~l~~~---------~~~l~~~~w~~vIvDEaHr~k 679 (1281)
+ ++.+....+.. ..|+... ..+|+-+|...+.-+ ......-.++++||||+..+.
T Consensus 145 L-Glsv~~~~~~~~~~~r~~~Y------~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 145 L-GLSVGIITSDMSSEERREAY------AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp T-T--EEEEETTTEHHHHHHHH------HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred h-hhccccCccccCHHHHHHHH------hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 8 56665554432 2222222 256888887766543 111112378899999998763
No 291
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.34 E-value=0.00086 Score=81.99 Aligned_cols=139 Identities=20% Similarity=0.183 Sum_probs=88.5
Q ss_pred hcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH--HH------HHHHH-HHHCCCCcEEEEeCCHH
Q psy7773 561 YNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL--SN------WVLEF-EKWAPSANVVAYKGSPL 631 (1281)
Q Consensus 561 ~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l--~~------W~~E~-~~~~p~~~~~~~~g~~~ 631 (1281)
.....|+=+-.|||+|||.+.+-++..|...- ....++||||.-.+ .+ -...| ...+.+.+.-.|.....
T Consensus 71 ~~~~lNiDI~METGTGKTy~YlrtmfeLhk~Y-G~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~ 149 (985)
T COG3587 71 IDDKLNIDILMETGTGKTYTYLRTMFELHKKY-GLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDED 149 (985)
T ss_pred CCCcceeeEEEecCCCceeeHHHHHHHHHHHh-CceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechH
Confidence 34455666778999999999999998887544 34689999996444 11 12334 44455455444433222
Q ss_pred HHHHHHhhhccCCccEEEechHHHhhc---ccccccC--------------------ceeEEEEeCCccccccchHHHHH
Q psy7773 632 ARRALQGRMKNSKFNVLLTTYEFIIKD---KSVLSKI--------------------QWKCMIIDEGHRMKNHHCKLTQT 688 (1281)
Q Consensus 632 ~r~~~~~~~~~~~~~vvItTye~l~~~---~~~l~~~--------------------~w~~vIvDEaHr~kn~~s~~~~~ 688 (1281)
... ..........|+|.+.+.+.++ ...+..- .--+|||||.|++... .+.+.+
T Consensus 150 ~~~--~~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~-~k~~~~ 226 (985)
T COG3587 150 IEK--FKFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD-DKTYGA 226 (985)
T ss_pred HHH--HhhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc-hHHHHH
Confidence 111 1122346678888888887665 2111110 1137999999999986 577888
Q ss_pred HHhhhccCcEEEeecC
Q psy7773 689 LNTFYNSSHRVLLTGT 704 (1281)
Q Consensus 689 l~~~~~~~~rllLTgT 704 (1281)
+..+ ++...|=.+||
T Consensus 227 i~~l-~pl~ilRfgAT 241 (985)
T COG3587 227 IKQL-NPLLILRFGAT 241 (985)
T ss_pred HHhh-CceEEEEeccc
Confidence 8776 77777778888
No 292
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.27 E-value=0.00034 Score=74.41 Aligned_cols=147 Identities=20% Similarity=0.269 Sum_probs=68.6
Q ss_pred ccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCC---c
Q psy7773 546 LKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSA---N 622 (1281)
Q Consensus 546 L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~---~ 622 (1281)
+-+.|...+.-|. +....++....|+|||+.|++....++.. +...+++|+-|..-...+ + -|.|+- +
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~~~~---l-GflpG~~~eK 75 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEAGED---L-GFLPGDLEEK 75 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--TT--------SS-------
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCCccc---c-ccCCCCHHHH
Confidence 4578999888777 34467788899999999999999888855 666788888886644221 1 112211 0
Q ss_pred EEEEeCCHHHHHHHHhhh-------ccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhcc
Q psy7773 623 VVAYKGSPLARRALQGRM-------KNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNS 695 (1281)
Q Consensus 623 ~~~~~g~~~~r~~~~~~~-------~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~ 695 (1281)
...|.. .....+.... ......|-+.+..+++- ..+...+||||||+++.... +-..+.++ ..
T Consensus 76 ~~p~~~--p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRG-----rt~~~~~iIvDEaQN~t~~~--~k~ilTR~-g~ 145 (205)
T PF02562_consen 76 MEPYLR--PIYDALEELFGKEKLEELIQNGKIEIEPLAFIRG-----RTFDNAFIIVDEAQNLTPEE--LKMILTRI-GE 145 (205)
T ss_dssp --TTTH--HHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT-------B-SEEEEE-SGGG--HHH--HHHHHTTB--T
T ss_pred HHHHHH--HHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcC-----ccccceEEEEecccCCCHHH--HHHHHccc-CC
Confidence 000000 0000000000 00123345555444422 12346899999999986544 23334443 56
Q ss_pred CcEEEeecCCCCCChh
Q psy7773 696 SHRVLLTGTPLQNKLP 711 (1281)
Q Consensus 696 ~~rllLTgTPl~n~~~ 711 (1281)
..+++++|-|.|.+..
T Consensus 146 ~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 146 GSKIIITGDPSQIDLP 161 (205)
T ss_dssp T-EEEEEE--------
T ss_pred CcEEEEecCceeecCC
Confidence 7889999999886654
No 293
>KOG0925|consensus
Probab=97.23 E-value=0.0039 Score=71.57 Aligned_cols=58 Identities=29% Similarity=0.412 Sum_probs=45.9
Q ss_pred EEEeccccccccCcccCCEEEEeCCC------C-----------ChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHH
Q psy7773 944 FLLSTRAGGLGLNLQAADTVIIFDSD------W-----------NPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVE 1003 (1281)
Q Consensus 944 ~LlsT~agg~GlNL~~ad~VI~~D~~------w-----------np~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiE 1003 (1281)
+++||..|...|.+.+.-.|| |+- + .|..-.||.-|++|.|.+++-..|+|.|+...+
T Consensus 316 vVvstniaetsltidgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~ 390 (699)
T KOG0925|consen 316 VVVSTNIAETSLTIDGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFE 390 (699)
T ss_pred EEEEecchheeeeeccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhh
Confidence 589999999988887766655 443 3 456667999999999999999999999876544
No 294
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.18 E-value=0.0028 Score=80.86 Aligned_cols=94 Identities=24% Similarity=0.270 Sum_probs=73.9
Q ss_pred HHHHHHHHHhC--CCcEEEecCCCC--HHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEEeCCC--CC-c-
Q psy7773 198 MTILEDYFIWR--DFSYLRLDGTTK--SEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSD--WN-P- 269 (1281)
Q Consensus 198 ~~~l~~~l~~~--g~~~~~~~g~~~--~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~--wn-p- 269 (1281)
.+.+++.|... +.++.++||++. ..+++.++..|.++..+ +|++|+..+.|+|+...+.|+++|.+ -+ |
T Consensus 439 ~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~---ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pd 515 (679)
T PRK05580 439 TERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEAD---ILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPD 515 (679)
T ss_pred HHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCC---EEEEChhhccCCCCCCcCEEEEEcCchhccCCc
Confidence 45677777665 889999999986 46799999999986655 57888999999999999999877654 22 3
Q ss_pred --------chhhHHhHhhhhcCCCCeEEEEEEE
Q psy7773 270 --------HQDLQAQDRAHRIGQKNEVRVLRLI 294 (1281)
Q Consensus 270 --------~~~~Qa~gR~~R~Gq~~~V~v~~l~ 294 (1281)
+.+.|+.||++|.|....|.+..+-
T Consensus 516 fra~Er~~~~l~q~~GRagR~~~~g~viiqT~~ 548 (679)
T PRK05580 516 FRASERTFQLLTQVAGRAGRAEKPGEVLIQTYH 548 (679)
T ss_pred cchHHHHHHHHHHHHhhccCCCCCCEEEEEeCC
Confidence 5689999999998877666655433
No 295
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=97.18 E-value=0.0015 Score=87.30 Aligned_cols=87 Identities=15% Similarity=0.156 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeccH---HHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEe---
Q psy7773 171 FELLDRILPKFKETKHRVLMFCQMT---QLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLS--- 244 (1281)
Q Consensus 171 ~~~L~~ll~~~~~~~~kvlIFs~~~---~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~s--- 244 (1281)
...|..+|..+ +..+|||++.. ..++.|...|...|+++..+||+++ +..++.|.++. +.||+++
T Consensus 315 ~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~G~--~~vLVata~~ 385 (1171)
T TIGR01054 315 KETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAEGE--IDVLIGVASY 385 (1171)
T ss_pred HHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHcCC--CCEEEEeccc
Confidence 45566666543 56799999988 8999999999999999999999997 37899999865 4576665
Q ss_pred ccccccCCCCCC-CCEEEEeCCC
Q psy7773 245 TRAGGLGLNLQA-ADTVIIFDSD 266 (1281)
Q Consensus 245 t~~~~~GlnL~~-a~~vi~~d~~ 266 (1281)
|.++++||+++. .++|||||+|
T Consensus 386 tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 386 YGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred cCcccccCCCCccccEEEEECCC
Confidence 689999999997 7999999999
No 296
>PRK10536 hypothetical protein; Provisional
Probab=97.17 E-value=0.0059 Score=66.85 Aligned_cols=144 Identities=18% Similarity=0.195 Sum_probs=82.7
Q ss_pred ccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCc---
Q psy7773 546 LKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSAN--- 622 (1281)
Q Consensus 546 L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~--- 622 (1281)
.-..|...+.++.. +..+++.-+.|+|||..++++....+.. +....++|+-|.-.. .+.-.|.|+-.
T Consensus 60 ~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~-~~~~kIiI~RP~v~~----ge~LGfLPG~~~eK 130 (262)
T PRK10536 60 RNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIH-KDVDRIIVTRPVLQA----DEDLGFLPGDIAEK 130 (262)
T ss_pred CCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhc-CCeeEEEEeCCCCCc----hhhhCcCCCCHHHH
Confidence 55688887777653 4477888999999999999998865533 334455554443322 12223333210
Q ss_pred EEE-----------EeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHh
Q psy7773 623 VVA-----------YKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNT 691 (1281)
Q Consensus 623 ~~~-----------~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~ 691 (1281)
+.. +.|.......+ ......|.|++..+++.. . +.-++||||||+++.-. .+...+.+
T Consensus 131 ~~p~~~pi~D~L~~~~~~~~~~~~~----~~~~~~Iei~~l~ymRGr-t----l~~~~vIvDEaqn~~~~--~~k~~ltR 199 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGASFMQYCL----RPEIGKVEIAPFAYMRGR-T----FENAVVILDEAQNVTAA--QMKMFLTR 199 (262)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHH----HhccCcEEEecHHHhcCC-c----ccCCEEEEechhcCCHH--HHHHHHhh
Confidence 000 01111111000 012234666666655332 1 24479999999998653 33444444
Q ss_pred hhccCcEEEeecCCCCCCh
Q psy7773 692 FYNSSHRVLLTGTPLQNKL 710 (1281)
Q Consensus 692 ~~~~~~rllLTgTPl~n~~ 710 (1281)
+ ....+++++|-|-|.++
T Consensus 200 ~-g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 200 L-GENVTVIVNGDITQCDL 217 (262)
T ss_pred c-CCCCEEEEeCChhhccC
Confidence 4 67889999999988664
No 297
>KOG4150|consensus
Probab=97.15 E-value=0.0018 Score=75.11 Aligned_cols=130 Identities=16% Similarity=0.185 Sum_probs=96.5
Q ss_pred ccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHH----HHHCCC----cEEEEeCCCChHHHHHHHHhhcCCCCCe
Q psy7773 870 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDY----FIWRDF----SYLRLDGTTKSEDRGELLRKFNEPESKY 941 (1281)
Q Consensus 870 ~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~----L~~~g~----~~~~l~G~~~~~~R~~~i~~Fn~~~~~~ 941 (1281)
-+.|+.-...++..+...|-|+|-||..+...+++-.. |..-|- .+..+.|+-..++|.++-...-.|+-
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L-- 584 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKL-- 584 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCee--
Confidence 35677777778888888899999999999876665433 322221 23457799999999998877655433
Q ss_pred EEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHH
Q psy7773 942 FIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEE 1004 (1281)
Q Consensus 942 ~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe 1004 (1281)
. -+|+|.|..+|||+-..|.|+....|.+..++.|..|||+|-.... ...+.+..+.|+.
T Consensus 585 ~-giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~S--Lavyva~~~PVDQ 644 (1034)
T KOG4150|consen 585 C-GIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPS--LAVYVAFLGPVDQ 644 (1034)
T ss_pred e-EEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCc--eEEEEEeccchhh
Confidence 2 4799999999999999999999999999999999999999965432 2223333444544
No 298
>PRK14701 reverse gyrase; Provisional
Probab=97.07 E-value=0.0015 Score=89.38 Aligned_cols=105 Identities=14% Similarity=0.162 Sum_probs=82.7
Q ss_pred HHHHHHHHHhhhCCCeEEEEeccHHH---HHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEec---
Q psy7773 172 ELLDRILPKFKETKHRVLMFCQMTQL---MTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLST--- 245 (1281)
Q Consensus 172 ~~L~~ll~~~~~~~~kvlIFs~~~~~---~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st--- 245 (1281)
..|..++..+ +...||||+.... ++.|...|...|+++..+||+ |...+++|.++... ||+++.
T Consensus 320 ~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~~~--VLVaT~s~~ 389 (1638)
T PRK14701 320 EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGEID--YLIGVATYY 389 (1638)
T ss_pred HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCCCC--EEEEecCCC
Confidence 4566666543 5689999987654 589999999999999999994 88999999986654 544443
Q ss_pred cccccCCCCCC-CCEEEEeCCCC---CcchhhHHh-------------HhhhhcCCCC
Q psy7773 246 RAGGLGLNLQA-ADTVIIFDSDW---NPHQDLQAQ-------------DRAHRIGQKN 286 (1281)
Q Consensus 246 ~~~~~GlnL~~-a~~vi~~d~~w---np~~~~Qa~-------------gR~~R~Gq~~ 286 (1281)
.++++||+++. ..+|||||+|= |...+.|.. ||++|-|..-
T Consensus 390 gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~ 447 (1638)
T PRK14701 390 GTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPI 447 (1638)
T ss_pred CeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcc
Confidence 58999999996 99999999997 655555554 8888888743
No 299
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=97.06 E-value=0.0036 Score=76.04 Aligned_cols=118 Identities=14% Similarity=0.174 Sum_probs=89.6
Q ss_pred cHHHHHHHHHHHhhhCCCeEEEEeccHH--------HHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHhcCCCCCc
Q psy7773 169 GKFELLDRILPKFKETKHRVLMFCQMTQ--------LMTILEDYFIWR--DFSYLRLDGTTKSEDRGELLRKFNEPESKY 238 (1281)
Q Consensus 169 ~K~~~L~~ll~~~~~~~~kvlIFs~~~~--------~~~~l~~~l~~~--g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~ 238 (1281)
.+...+.+.+..-...|+++.+.|.-.. .+..+...|+.. ++.+..+||.|+.+++.+++..|+++..+
T Consensus 457 ~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~- 535 (677)
T COG1200 457 ERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEID- 535 (677)
T ss_pred ccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCc-
Confidence 4455555556555568999998886542 233334444422 66788999999999999999999987665
Q ss_pred eEEEEeccccccCCCCCCCCEEEEeCCC-CCcchhhHHhHhhhhcCCCCeEE
Q psy7773 239 FIFLLSTRAGGLGLNLQAADTVIIFDSD-WNPHQDLQAQDRAHRIGQKNEVR 289 (1281)
Q Consensus 239 ~vll~st~~~~~GlnL~~a~~vi~~d~~-wnp~~~~Qa~gR~~R~Gq~~~V~ 289 (1281)
+|+||.+.-+|+|+.+|+.+|+++.. +--+..-|--||++|-+.+.-|.
T Consensus 536 --ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~ 585 (677)
T COG1200 536 --ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCV 585 (677)
T ss_pred --EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEE
Confidence 68999999999999999999999875 34677789999999976655443
No 300
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=97.01 E-value=0.028 Score=71.52 Aligned_cols=128 Identities=14% Similarity=0.203 Sum_probs=100.2
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..|+.++..-+..+...|..|||-|.+....+.|...|...|+++..++.... ..-..++..=- ..+ -+.++|..
T Consensus 551 ~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~-~~Ea~iia~AG--~~g--~VTIATNm 625 (970)
T PRK12899 551 REKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH-AQEAEIIAGAG--KLG--AVTVATNM 625 (970)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh-hhHHHHHHhcC--CCC--cEEEeecc
Confidence 47888888888888889999999999999999999999999999999998644 22334444432 222 36888999
Q ss_pred cccCCCCCC--------CCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHH
Q psy7773 248 GGLGLNLQA--------ADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILA 305 (1281)
Q Consensus 248 ~~~GlnL~~--------a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~ 305 (1281)
+|+|-++.- .=|||.-..+=|...+.|..||++|.|..-....|- |+|..++.
T Consensus 626 AGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~l-----SlEDdL~~ 686 (970)
T PRK12899 626 AGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFL-----SFEDRLMR 686 (970)
T ss_pred ccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEE-----EcchHHHH
Confidence 999977652 238898999999999999999999999976555443 45555553
No 301
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.96 E-value=0.006 Score=76.80 Aligned_cols=126 Identities=9% Similarity=-0.007 Sum_probs=86.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHCCCCcEEEEeCCHHHHHHHH--hhhccCCccEEE
Q psy7773 573 MGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWAPSANVVAYKGSPLARRALQ--GRMKNSKFNVLL 649 (1281)
Q Consensus 573 mGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~--~~~~~~~~~vvI 649 (1281)
.|+|||-..+.++...+..+ +.+||++|. ++..|+...|...|+...+.+|++.-....... .....+...|||
T Consensus 169 ~GSGKTevyl~~i~~~l~~G---k~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IVi 245 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAG---RGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVV 245 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcC---CeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEE
Confidence 49999999999998887542 469999995 666999999999997677888887544433322 334567789999
Q ss_pred echHHHhhcccccccCceeEEEEeCCccc--cccc-----hHHHHHHHhhhccCcEEEeecCCC
Q psy7773 650 TTYEFIIKDKSVLSKIQWKCMIIDEGHRM--KNHH-----CKLTQTLNTFYNSSHRVLLTGTPL 706 (1281)
Q Consensus 650 tTye~l~~~~~~l~~~~w~~vIvDEaHr~--kn~~-----s~~~~~l~~~~~~~~rllLTgTPl 706 (1281)
-|...+.-- --+..+|||||=|.- |... ..-...+......-..++-|+||-
T Consensus 246 GtRSAvFaP-----~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 246 GTRSAVFAP-----VEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred EcceeEEec-----cCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 998865322 225689999999864 3222 111222222223455677899993
No 302
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=96.90 E-value=0.0074 Score=74.53 Aligned_cols=131 Identities=18% Similarity=0.178 Sum_probs=103.6
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..|+.++.+-+..+.+.|..|||.|.+....+.|...|...|+++..++.... ++-..+|..=-. .+ -+.++|..
T Consensus 410 ~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~AG~-~g---aVTIATNM 484 (764)
T PRK12326 410 AEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAEAGK-YG---AVTVSTQM 484 (764)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHhcCC-CC---cEEEEecC
Confidence 46888888888888889999999999999999999999999999999998754 333555555432 22 36888999
Q ss_pred cccCCCCCC---------------CCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHh
Q psy7773 248 GGLGLNLQA---------------ADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAAR 308 (1281)
Q Consensus 248 ~~~GlnL~~---------------a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~ 308 (1281)
+|.|-++.- .=|||--..+=|--.+.|..||++|.|..-....|- |+|..++.+..
T Consensus 485 AGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~l-----SleDdl~~~f~ 555 (764)
T PRK12326 485 AGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFV-----SLEDDVVAANL 555 (764)
T ss_pred CCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEE-----EcchhHHHhcC
Confidence 999988662 238888899999999999999999999976655554 56666664443
No 303
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=96.83 E-value=0.0035 Score=81.09 Aligned_cols=132 Identities=20% Similarity=0.225 Sum_probs=109.8
Q ss_pred cHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHH----HHHHhCC----CcEEEecCCCCHHHHHHHHHHhcCCCCCceE
Q psy7773 169 GKFELLDRILPKFKETKHRVLMFCQMTQLMTILE----DYFIWRD----FSYLRLDGTTKSEDRGELLRKFNEPESKYFI 240 (1281)
Q Consensus 169 ~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~----~~l~~~g----~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~v 240 (1281)
++...+..++..+..++-+.|+|+.+...++.+. ..+...| ..+..+.|++...+|..+...|+.+...
T Consensus 290 s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~--- 366 (851)
T COG1205 290 SALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELL--- 366 (851)
T ss_pred chHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCcc---
Confidence 6777888888888889999999999999888885 4455555 5688999999999999999999987664
Q ss_pred EEEeccccccCCCCCCCCEEEEeCCCC-CcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHH
Q psy7773 241 FLLSTRAGGLGLNLQAADTVIIFDSDW-NPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILA 305 (1281)
Q Consensus 241 ll~st~~~~~GlnL~~a~~vi~~d~~w-np~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~ 305 (1281)
++++|.+.-.|+++...+.||.+-.|- .-..+.|+.||++|.|| ...++...-.+-+|.++..
T Consensus 367 ~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~--~~l~~~v~~~~~~d~yy~~ 430 (851)
T COG1205 367 GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQ--ESLVLVVLRSDPLDSYYLR 430 (851)
T ss_pred EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCC--CceEEEEeCCCccchhhhh
Confidence 689999999999999999999999887 66889999999999995 4344444447778876653
No 304
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.80 E-value=0.0045 Score=72.95 Aligned_cols=90 Identities=20% Similarity=0.211 Sum_probs=54.6
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHH-HHHHHCCCCcEEEEeCCHHHHHHHHhhhccCCcc
Q psy7773 568 ILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVL-EFEKWAPSANVVAYKGSPLARRALQGRMKNSKFN 646 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~-E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~ 646 (1281)
|+--..|+|||+.++.++..+. ........+++|+...+.+... .+..-. . .....
T Consensus 5 ~I~G~aGTGKTvla~~l~~~l~-~~~~~~~~~~l~~n~~l~~~l~~~l~~~~-------~---------------~~~~~ 61 (352)
T PF09848_consen 5 LITGGAGTGKTVLALNLAKELQ-NSEEGKKVLYLCGNHPLRNKLREQLAKKY-------N---------------PKLKK 61 (352)
T ss_pred EEEecCCcCHHHHHHHHHHHhh-ccccCCceEEEEecchHHHHHHHHHhhhc-------c---------------cchhh
Confidence 5666799999999999998882 2233457788888877766444 443322 0 01111
Q ss_pred EEEechHHHhhccc--ccccCceeEEEEeCCccccc
Q psy7773 647 VLLTTYEFIIKDKS--VLSKIQWKCMIIDEGHRMKN 680 (1281)
Q Consensus 647 vvItTye~l~~~~~--~l~~~~w~~vIvDEaHr~kn 680 (1281)
..+..+..+..... ......+++|||||||++..
T Consensus 62 ~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 62 SDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 22223333322221 22334789999999999986
No 305
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.78 E-value=0.011 Score=63.31 Aligned_cols=126 Identities=18% Similarity=0.184 Sum_probs=68.5
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCcEE
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSANVV 624 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~~~ 624 (1281)
+|.+-|.+++..++.. ...-.+|.-..|+|||.....+...+. ..+ .++++++|+.....= +..-. ..
T Consensus 1 ~L~~~Q~~a~~~~l~~--~~~~~~l~G~aGtGKT~~l~~~~~~~~-~~g--~~v~~~apT~~Aa~~---L~~~~-~~--- 68 (196)
T PF13604_consen 1 TLNEEQREAVRAILTS--GDRVSVLQGPAGTGKTTLLKALAEALE-AAG--KRVIGLAPTNKAAKE---LREKT-GI--- 68 (196)
T ss_dssp -S-HHHHHHHHHHHHC--TCSEEEEEESTTSTHHHHHHHHHHHHH-HTT----EEEEESSHHHHHH---HHHHH-TS---
T ss_pred CCCHHHHHHHHHHHhc--CCeEEEEEECCCCCHHHHHHHHHHHHH-hCC--CeEEEECCcHHHHHH---HHHhh-Cc---
Confidence 4789999999988752 223356778899999987665554443 332 689999998765322 21111 00
Q ss_pred EEeCCHHHHHHHHhhhccCCccEEEechHHHhhccccc--c----cCceeEEEEeCCccccccchHHHHHHHhhhccCcE
Q psy7773 625 AYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVL--S----KIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHR 698 (1281)
Q Consensus 625 ~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l--~----~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~r 698 (1281)
-..|...+....... . ....++||||||-.+.... +...+.....+..+
T Consensus 69 -----------------------~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~--~~~ll~~~~~~~~k 123 (196)
T PF13604_consen 69 -----------------------EAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQ--LARLLRLAKKSGAK 123 (196)
T ss_dssp ------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHH--HHHHHHHS-T-T-E
T ss_pred -----------------------chhhHHHHHhcCCcccccccccCCcccEEEEecccccCHHH--HHHHHHHHHhcCCE
Confidence 111222222111110 0 2345799999999986544 33333333234678
Q ss_pred EEeecCCCC
Q psy7773 699 VLLTGTPLQ 707 (1281)
Q Consensus 699 llLTgTPl~ 707 (1281)
++|.|-|.|
T Consensus 124 lilvGD~~Q 132 (196)
T PF13604_consen 124 LILVGDPNQ 132 (196)
T ss_dssp EEEEE-TTS
T ss_pred EEEECCcch
Confidence 999999987
No 306
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=96.77 E-value=0.0057 Score=78.84 Aligned_cols=133 Identities=15% Similarity=0.155 Sum_probs=101.1
Q ss_pred HHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcC--CCCCceEEEEeccccccCCCC
Q psy7773 177 ILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNE--PESKYFIFLLSTRAGGLGLNL 254 (1281)
Q Consensus 177 ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~--~~~~~~vll~st~~~~~GlnL 254 (1281)
.+......+.+|+|.++.+..+..+-..|+..+.+++.+|+.+....|.+.++...+ ..... .++++|++.-.|+|+
T Consensus 432 ~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~-~IvVaTQVIEagvDi 510 (733)
T COG1203 432 LISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEG-FIVVATQVIEAGVDI 510 (733)
T ss_pred cchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCC-eEEEEeeEEEEEecc
Confidence 333344678999999999999999999999988889999999999999998885432 11112 478999999999998
Q ss_pred CCCCEEEEeCCCCCcchhhHHhHhhhhcC--CCCeEEEEEEEeccchHHHHHHHHhhcccc
Q psy7773 255 QAADTVIIFDSDWNPHQDLQAQDRAHRIG--QKNEVRVLRLITVNSVEERILAAARYKLNM 313 (1281)
Q Consensus 255 ~~a~~vi~~d~~wnp~~~~Qa~gR~~R~G--q~~~V~v~~l~~~~Tiee~i~~~~~~K~~l 313 (1281)
. .+.+ +-|+. -.....||.||++|-| ....+.||...-......+.+.....+...
T Consensus 511 d-fd~m-ITe~a-PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 568 (733)
T COG1203 511 D-FDVL-ITELA-PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLKS 568 (733)
T ss_pred c-cCee-eecCC-CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhhcc
Confidence 8 3333 33333 2466789999999999 445588888888888888777766665443
No 307
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=96.65 E-value=0.064 Score=68.55 Aligned_cols=120 Identities=15% Similarity=0.209 Sum_probs=97.1
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..|+.++.+-+..+...|..|||-|.+...-+.|...|...||++..++...-. +-..++..=-. .+ .+.++|..
T Consensus 611 ~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~-~EAeIVA~AG~-~G---aVTIATNM 685 (1112)
T PRK12901 611 REKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQ-KEAEIVAEAGQ-PG---TVTIATNM 685 (1112)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchh-hHHHHHHhcCC-CC---cEEEeccC
Confidence 578999999998988999999999999999999999999999999988876442 33344444322 23 36788999
Q ss_pred cccCCCCC--------CCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEE
Q psy7773 248 GGLGLNLQ--------AADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLR 292 (1281)
Q Consensus 248 ~~~GlnL~--------~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~ 292 (1281)
+|+|-++. +.=|||.-..+=|...+.|..||++|.|..-....|-
T Consensus 686 AGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~l 738 (1112)
T PRK12901 686 AGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYV 738 (1112)
T ss_pred cCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEE
Confidence 99998866 3458898999999999999999999999976554443
No 308
>KOG1803|consensus
Probab=96.60 E-value=0.011 Score=70.49 Aligned_cols=66 Identities=24% Similarity=0.309 Sum_probs=52.0
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHH
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEF 614 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~ 614 (1281)
...|-+-|..++.++.. +..-.|+-.++|+|||.+.+-+|..++.++ ..+||.+|+.+. .|....+
T Consensus 183 ~~~ln~SQk~Av~~~~~---~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 183 NKNLNSSQKAAVSFAIN---NKDLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred CccccHHHHHHHHHHhc---cCCceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHHHHHHh
Confidence 44688899999988775 223457788999999999999999998554 689999998764 7776643
No 309
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.55 E-value=0.0042 Score=64.70 Aligned_cols=79 Identities=22% Similarity=0.294 Sum_probs=56.2
Q ss_pred hhcCCeEEEEechHHHHHHHHHHHHHCC----CcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEecc--ccccccCcc
Q psy7773 885 KETKHRVLMFCQMTQLMTILEDYFIWRD----FSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR--AGGLGLNLQ 958 (1281)
Q Consensus 885 ~~~~~kvLIFsq~~~~ld~L~~~L~~~g----~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~--agg~GlNL~ 958 (1281)
...+.++|||+.+-..++.+...+...+ +.+. .. +...+..+++.|..++.. +|+++. ..++|||++
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~-~q---~~~~~~~~l~~~~~~~~~---il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVF-VQ---GSKSRDELLEEFKRGEGA---ILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEE-ES---TCCHHHHHHHHHCCSSSE---EEEEETTSCCGSSS--E
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceee-ec---CcchHHHHHHHHHhccCe---EEEEEecccEEEeecCC
Confidence 3456789999999999999999987653 3222 22 355889999999985544 678887 899999999
Q ss_pred c--CCEEEEeCCCC
Q psy7773 959 A--ADTVIIFDSDW 970 (1281)
Q Consensus 959 ~--ad~VI~~D~~w 970 (1281)
+ |..||+.-.|+
T Consensus 79 ~~~~r~vii~glPf 92 (167)
T PF13307_consen 79 GDLLRAVIIVGLPF 92 (167)
T ss_dssp CESEEEEEEES---
T ss_pred CchhheeeecCCCC
Confidence 6 88999998886
No 310
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.52 E-value=0.0035 Score=62.29 Aligned_cols=116 Identities=20% Similarity=0.195 Sum_probs=60.0
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhc---CCCCCEEEEeCCcc-HHHHHHHHHHHCC-CCcEEEEeCCHHHHHHHHh
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYLMEKK---KNLGPYLVIVPLST-LSNWVLEFEKWAP-SANVVAYKGSPLARRALQG 638 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l~~~~---~~~~~~LIV~P~s~-l~~W~~E~~~~~p-~~~~~~~~g~~~~r~~~~~ 638 (1281)
+..+++..+.|+|||..+-.++..+.... ....-+.|-||... ...+..++...+. .... ..+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~-------- 72 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS---RQTS-------- 72 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS---TS-H--------
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc---cCCH--------
Confidence 44567889999999999888887765321 11122444555443 3445444433321 1000 0000
Q ss_pred hhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhc-cCcEEEeecCC
Q psy7773 639 RMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYN-SSHRVLLTGTP 705 (1281)
Q Consensus 639 ~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~-~~~rllLTgTP 705 (1281)
.+.+..-...+....-.+|||||+|++. +......+..++. ....++|+|||
T Consensus 73 -------------~~l~~~~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 73 -------------DELRSLLIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp -------------HHHHHHHHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred -------------HHHHHHHHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 0111111122222233789999999984 2444555555544 44568999999
No 311
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.46 E-value=0.025 Score=71.51 Aligned_cols=67 Identities=21% Similarity=0.236 Sum_probs=52.3
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHH
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEK 616 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~ 616 (1281)
..|-+.|..+|.+++. +....|+-.++|+|||.+++.++..+...+ .++||++|+... .+....+..
T Consensus 156 ~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g---~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVKRG---LRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHHcC---CCEEEEcCcHHHHHHHHHHHHh
Confidence 4688999999988663 334678889999999999999988877432 389999998765 666666655
No 312
>KOG1802|consensus
Probab=96.36 E-value=0.016 Score=69.07 Aligned_cols=146 Identities=20% Similarity=0.292 Sum_probs=95.2
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCCCCc
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAPSAN 622 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p~~~ 622 (1281)
.+|-.-|..||...+. +.-.||-.++|+|||+++.+++.++... ..+|+||++|..+. .|...-|.+- +++
T Consensus 409 pkLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh~t--gLK 480 (935)
T KOG1802|consen 409 PKLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIHKT--GLK 480 (935)
T ss_pred hhhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHHHHHHh--cCCceEEEcccchhHHHHHHHHHhc--Cce
Confidence 3788899999988874 4457899999999999999999888866 45899999998875 7777777664 355
Q ss_pred EEEEeCCH-----------------------HHHHHHH-----------------------hhhccCCccEEEechHHHh
Q psy7773 623 VVAYKGSP-----------------------LARRALQ-----------------------GRMKNSKFNVLLTTYEFII 656 (1281)
Q Consensus 623 ~~~~~g~~-----------------------~~r~~~~-----------------------~~~~~~~~~vvItTye~l~ 656 (1281)
|+-+.... ....... ........+||.||.-.
T Consensus 481 VvRl~aksRE~~~S~vs~L~lh~~~~~~~~pELq~l~klkde~gelS~sD~~k~~~lk~~~e~ell~~AdVIccTcv~-- 558 (935)
T KOG1802|consen 481 VVRLCAKSREDIESDVSFLSLHEQLRNMDKPELQKLLKLKDEGGELSSSDEKKYRKLKRAAEKELLNQADVICCTCVG-- 558 (935)
T ss_pred EeeeehhhhhhccCCccHHHHHHHHhccCcHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhcCEEEEeccc--
Confidence 54432211 1000000 00112456777777432
Q ss_pred hcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEEeecC
Q psy7773 657 KDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLTGT 704 (1281)
Q Consensus 657 ~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllLTgT 704 (1281)
.-...|..++|..|+||||-....+.+..--. ...+-+.|-|-
T Consensus 559 Agd~rl~~~kfr~VLiDEaTQatEpe~LiPlv-----lG~kq~VlVGD 601 (935)
T KOG1802|consen 559 AGDRRLSKFKFRTVLIDEATQATEPECLIPLV-----LGAKQLVLVGD 601 (935)
T ss_pred ccchhhccccccEEEEecccccCCcchhhhhh-----hcceeEEEecc
Confidence 22345667899999999999876666433221 24444555554
No 313
>KOG1132|consensus
Probab=96.29 E-value=0.027 Score=69.88 Aligned_cols=89 Identities=19% Similarity=0.281 Sum_probs=58.3
Q ss_pred CeEEEEechHHHHHHHHHHHHHC-------CCcEEEEeCCCChHHHHHHHHhhcC----CCC-CeEEEEEeccccccccC
Q psy7773 889 HRVLMFCQMTQLMTILEDYFIWR-------DFSYLRLDGTTKSEDRGELLRKFNE----PES-KYFIFLLSTRAGGLGLN 956 (1281)
Q Consensus 889 ~kvLIFsq~~~~ld~L~~~L~~~-------g~~~~~l~G~~~~~~R~~~i~~Fn~----~~~-~~~v~LlsT~agg~GlN 956 (1281)
+-+|||..+-.+++-+..+.... +.+- .+.+--+..+=.+++..|.+ +++ ....|.++--..++|||
T Consensus 562 ~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~-l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlD 640 (945)
T KOG1132|consen 562 YGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKK-LVVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLD 640 (945)
T ss_pred cceEEeccchHHHHHHHHHHHcchHHHHhhcccC-ceeccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCC
Confidence 34999999988999886665443 2232 22233344445556666632 222 23345677888899999
Q ss_pred ccc--CCEEEEeCCCCChhhhhhH
Q psy7773 957 LQA--ADTVIIFDSDWNPHQDLQA 978 (1281)
Q Consensus 957 L~~--ad~VI~~D~~wnp~~~~Qa 978 (1281)
+.+ +..||+...|+=|..|.|-
T Consensus 641 FsD~~~RaVI~tGlPyP~~~D~~V 664 (945)
T KOG1132|consen 641 FSDDNGRAVIITGLPYPPVMDPRV 664 (945)
T ss_pred ccccCCceeEEecCCCCCCCCHHH
Confidence 986 7789999999877766653
No 314
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=96.25 E-value=0.054 Score=60.22 Aligned_cols=116 Identities=17% Similarity=0.220 Sum_probs=89.4
Q ss_pred HHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhC-CC-cEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecccccc
Q psy7773 173 LLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR-DF-SYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGL 250 (1281)
Q Consensus 173 ~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~-g~-~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~ 250 (1281)
.|...|+.-...|..++||.....+++.+...|+.. +. .++.++.... .|.+.+..|+++.-. +|++|.....
T Consensus 293 kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~--~R~EkV~~fR~G~~~---lLiTTTILER 367 (441)
T COG4098 293 KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQ--HRKEKVEAFRDGKIT---LLITTTILER 367 (441)
T ss_pred HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCc--cHHHHHHHHHcCceE---EEEEeehhhc
Confidence 456666666778899999999999999999988433 22 3355555444 799999999986543 6899999999
Q ss_pred CCCCCCCCEEEEeCCC--CCcchhhHHhHhhhhcCCCCe--EEEEEE
Q psy7773 251 GLNLQAADTVIIFDSD--WNPHQDLQAQDRAHRIGQKNE--VRVLRL 293 (1281)
Q Consensus 251 GlnL~~a~~vi~~d~~--wnp~~~~Qa~gR~~R~Gq~~~--V~v~~l 293 (1281)
|+++...++.|+=..+ ++-+...|.-||++|-=..-+ |..|++
T Consensus 368 GVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 368 GVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred ccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEec
Confidence 9999999998887666 788899999999999654433 444443
No 315
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=96.24 E-value=0.19 Score=64.06 Aligned_cols=121 Identities=15% Similarity=0.153 Sum_probs=97.4
Q ss_pred cCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecc
Q psy7773 167 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 246 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~ 246 (1281)
...|+.++.+-+..+.+.|..|||-+.+....+.|...|...|+++-.++.... ++-..++.. .|..+ .+.++|.
T Consensus 431 ~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa~--AG~~G--aVTIATN 505 (913)
T PRK13103 431 AEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIAQ--AGRPG--ALTIATN 505 (913)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHHc--CCCCC--cEEEecc
Confidence 357999999989888899999999999999999999999999999988887644 333445553 33232 3688899
Q ss_pred ccccCCCCC-------------------------------------CCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEE
Q psy7773 247 AGGLGLNLQ-------------------------------------AADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVR 289 (1281)
Q Consensus 247 ~~~~GlnL~-------------------------------------~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~ 289 (1281)
.+|.|-++. +.=|||--..+=|--.+.|.-||++|.|..-...
T Consensus 506 MAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~ 585 (913)
T PRK13103 506 MAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSR 585 (913)
T ss_pred CCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceE
Confidence 999998865 2238888899999999999999999999976555
Q ss_pred EEE
Q psy7773 290 VLR 292 (1281)
Q Consensus 290 v~~ 292 (1281)
.|-
T Consensus 586 f~l 588 (913)
T PRK13103 586 FYL 588 (913)
T ss_pred EEE
Confidence 544
No 316
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=96.18 E-value=0.039 Score=71.25 Aligned_cols=118 Identities=15% Similarity=0.149 Sum_probs=93.0
Q ss_pred HHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccC
Q psy7773 174 LDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR--DFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLG 251 (1281)
Q Consensus 174 L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~--g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~G 251 (1281)
+.+.|..-..+|.+|....+....+..+...|+.. ...++..||.|+..+-+.++..|.++..+ +|+||...-.|
T Consensus 792 ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~d---VLv~TTIIEtG 868 (1139)
T COG1197 792 IREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYD---VLVCTTIIETG 868 (1139)
T ss_pred HHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCC---EEEEeeeeecC
Confidence 34444444457788888888899999988888766 45688899999999999999999987655 47777888999
Q ss_pred CCCCCCCEEEEeCCC-CCcchhhHHhHhhhhcCCCCeEEEEEEEec
Q psy7773 252 LNLQAADTVIIFDSD-WNPHQDLQAQDRAHRIGQKNEVRVLRLITV 296 (1281)
Q Consensus 252 lnL~~a~~vi~~d~~-wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~ 296 (1281)
|++..||++|+-+-+ +--+..-|--||++|-.. .-+.|-++..
T Consensus 869 IDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~--~AYAYfl~p~ 912 (1139)
T COG1197 869 IDIPNANTIIIERADKFGLAQLYQLRGRVGRSNK--QAYAYFLYPP 912 (1139)
T ss_pred cCCCCCceEEEeccccccHHHHHHhccccCCccc--eEEEEEeecC
Confidence 999999999986543 346778899999999654 5677777664
No 317
>COG1204 Superfamily II helicase [General function prediction only]
Probab=96.15 E-value=0.013 Score=74.79 Aligned_cols=112 Identities=21% Similarity=0.148 Sum_probs=82.5
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHh----C---------------------------------CCcEE
Q psy7773 171 FELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIW----R---------------------------------DFSYL 213 (1281)
Q Consensus 171 ~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~----~---------------------------------g~~~~ 213 (1281)
...+..++....+.+..++||++++.........+.. . -..++
T Consensus 239 ~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gva 318 (766)
T COG1204 239 DNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVA 318 (766)
T ss_pred hHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCcc
Confidence 3555566666678899999999988655555444441 0 01245
Q ss_pred EecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEE----EeC-----CCCCcchhhHHhHhhhhcCC
Q psy7773 214 RLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVI----IFD-----SDWNPHQDLQAQDRAHRIGQ 284 (1281)
Q Consensus 214 ~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi----~~d-----~~wnp~~~~Qa~gR~~R~Gq 284 (1281)
..|.+++.+.|+-+-+.|+.+. ++| |+||.+.+.|+||++=.+|| .|| -+-++..+.|..||++|.|=
T Consensus 319 fHhAGL~~~~R~~vE~~Fr~g~--ikV-lv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~ 395 (766)
T COG1204 319 FHHAGLPREDRQLVEDAFRKGK--IKV-LVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGY 395 (766)
T ss_pred ccccCCCHHHHHHHHHHHhcCC--ceE-EEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCc
Confidence 6788999999999999999854 444 88889999999999665555 355 34467888999999999986
Q ss_pred C
Q psy7773 285 K 285 (1281)
Q Consensus 285 ~ 285 (1281)
.
T Consensus 396 d 396 (766)
T COG1204 396 D 396 (766)
T ss_pred C
Confidence 4
No 318
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=96.15 E-value=0.21 Score=63.47 Aligned_cols=84 Identities=11% Similarity=0.139 Sum_probs=66.3
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCC-CHHHHHHHHHHhcCCCCCceEEEEecc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTT-KSEDRGELLRKFNEPESKYFIFLLSTR 246 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~-~~~~R~~~i~~F~~~~~~~~vll~st~ 246 (1281)
..|+.++.+-+......|..|||-|.+....+.|...|...|+++..++... ..++=..+|..= |..+ -+.++|.
T Consensus 407 ~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~A--G~~G--~VTIATN 482 (870)
T CHL00122 407 LSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQA--GRKG--SITIATN 482 (870)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhc--CCCC--cEEEecc
Confidence 3588888888888888999999999999999999999999999999999874 234444566553 2222 3688899
Q ss_pred ccccCCCCC
Q psy7773 247 AGGLGLNLQ 255 (1281)
Q Consensus 247 ~~~~GlnL~ 255 (1281)
.+|+|-+..
T Consensus 483 MAGRGTDI~ 491 (870)
T CHL00122 483 MAGRGTDII 491 (870)
T ss_pred ccCCCcCee
Confidence 999996644
No 319
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.08 E-value=0.0048 Score=66.24 Aligned_cols=73 Identities=22% Similarity=0.219 Sum_probs=57.7
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHC
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWA 618 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~ 618 (1281)
+..+||-|.+.+..|... ..+.|.++-.-||-|||-+.+-+++.++..+. .=+-+|||.+++.+-..-+...+
T Consensus 21 ~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~--~LvrviVpk~Ll~q~~~~L~~~l 93 (229)
T PF12340_consen 21 NILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADGS--RLVRVIVPKALLEQMRQMLRSRL 93 (229)
T ss_pred CceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCCC--cEEEEEcCHHHHHHHHHHHHHHH
Confidence 457999999999999863 45678899999999999998888877763322 35778999999988777765544
No 320
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.05 E-value=0.054 Score=54.33 Aligned_cols=45 Identities=27% Similarity=0.287 Sum_probs=28.9
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHH
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWV 611 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~ 611 (1281)
+...++..++|+|||..+-.++..+. ....+++++........+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~ 63 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLV 63 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhH
Confidence 55678899999999987777666654 1224555555544444333
No 321
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=95.92 E-value=0.029 Score=69.47 Aligned_cols=122 Identities=12% Similarity=0.229 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHhhhC---C---CeEEEEeccHHHHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHhcCCCCCc
Q psy7773 170 KFELLDRILPKFKET---K---HRVLMFCQMTQLMTILEDYFIWR-----DFSYLRLDGTTKSEDRGELLRKFNEPESKY 238 (1281)
Q Consensus 170 K~~~L~~ll~~~~~~---~---~kvlIFs~~~~~~~~l~~~l~~~-----g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~ 238 (1281)
-...+...|...... | .|.||||.....++.|...|... |-=++.|+|... +-+..|+.|-. ....
T Consensus 405 ~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~~-ke~~ 481 (875)
T COG4096 405 RTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDNFID-KEKY 481 (875)
T ss_pred hHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHHHHHh-cCCC
Confidence 344555555554433 3 69999999999999999999765 223566888766 45667888876 3345
Q ss_pred eEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcC-------CCCe-EEEEEEE
Q psy7773 239 FIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIG-------QKNE-VRVLRLI 294 (1281)
Q Consensus 239 ~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~G-------q~~~-V~v~~l~ 294 (1281)
..+.++.+.+..|++...+..+|++-.--+-..+.|.+||.-|+. |.+. ..|+.++
T Consensus 482 P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 482 PRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred CceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhh
Confidence 567899999999999999999999999999999999999999973 3343 5666544
No 322
>KOG1131|consensus
Probab=95.88 E-value=0.031 Score=64.96 Aligned_cols=60 Identities=15% Similarity=0.088 Sum_probs=43.7
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVP 603 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P 603 (1281)
...+|-|..=..-+......+++|+|-.+.|+|||+.-++++.......+....-||-|.
T Consensus 15 ~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCS 74 (755)
T KOG1131|consen 15 DYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCS 74 (755)
T ss_pred cccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEec
Confidence 357788887655566667888999999999999999999887665544443334455554
No 323
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=95.81 E-value=0.034 Score=57.93 Aligned_cols=80 Identities=23% Similarity=0.310 Sum_probs=54.9
Q ss_pred hhCCCeEEEEeccHHHHHHHHHHHHhCC----CcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecc--ccccCCCCC
Q psy7773 182 KETKHRVLMFCQMTQLMTILEDYFIWRD----FSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR--AGGLGLNLQ 255 (1281)
Q Consensus 182 ~~~~~kvlIFs~~~~~~~~l~~~l~~~g----~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~--~~~~GlnL~ 255 (1281)
...+..+|||+.+-..++.+...+...+ +.+. ..+ ...+..+++.|..+.+ .+|+++. ..++|||+.
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~-~q~---~~~~~~~l~~~~~~~~---~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVF-VQG---SKSRDELLEEFKRGEG---AILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEE-EST---CCHHHHHHHHHCCSSS---EEEEEETTSCCGSSS--E
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceee-ecC---cchHHHHHHHHHhccC---eEEEEEecccEEEeecCC
Confidence 3456899999999999999999987664 3332 222 3478999999998544 3566666 899999999
Q ss_pred --CCCEEEEeCCCCC
Q psy7773 256 --AADTVIIFDSDWN 268 (1281)
Q Consensus 256 --~a~~vi~~d~~wn 268 (1281)
.+..||+.-+|+-
T Consensus 79 ~~~~r~vii~glPfp 93 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFP 93 (167)
T ss_dssp CESEEEEEEES----
T ss_pred CchhheeeecCCCCC
Confidence 4778999988873
No 324
>KOG4150|consensus
Probab=95.79 E-value=0.04 Score=64.41 Aligned_cols=133 Identities=17% Similarity=0.201 Sum_probs=101.6
Q ss_pred cCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHH----HHHHhCCC----cEEEecCCCCHHHHHHHHHHhcCCCCCc
Q psy7773 167 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILE----DYFIWRDF----SYLRLDGTTKSEDRGELLRKFNEPESKY 238 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~----~~l~~~g~----~~~~~~g~~~~~~R~~~i~~F~~~~~~~ 238 (1281)
.+.|+.....++.++...+-++|-||..+..-+.+. ..|...|- .+..+.|+.+.++|.++-...-.+.-
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L-- 584 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKL-- 584 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCee--
Confidence 367788888888888889999999999887655543 33433333 35678999999999988876555433
Q ss_pred eEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHH
Q psy7773 239 FIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERIL 304 (1281)
Q Consensus 239 ~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~ 304 (1281)
.-+++|.+...||++..-+.|+++-.|.+-+.+.|-.||++|-+... ..||. +..+.+|.+-+
T Consensus 585 -~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~S-Lavyv-a~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 585 -CGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPS-LAVYV-AFLGPVDQYYM 647 (1034)
T ss_pred -eEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCc-eEEEE-EeccchhhHhh
Confidence 24789999999999999999999999999999999999999975422 33333 45566776543
No 325
>KOG0951|consensus
Probab=95.71 E-value=0.027 Score=71.86 Aligned_cols=110 Identities=27% Similarity=0.288 Sum_probs=80.9
Q ss_pred hhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-----HHHHHHHHHHCCCCcEEEEeCCHHHHH
Q psy7773 560 LYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-----SNWVLEFEKWAPSANVVAYKGSPLARR 634 (1281)
Q Consensus 560 ~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-----~~W~~E~~~~~p~~~~~~~~g~~~~r~ 634 (1281)
.|+.+.+.+++.+.|+|||++|-.++.. ....+++.-|+|...+ .-|..-|.+- .+..++...|......
T Consensus 1155 ~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~l 1229 (1674)
T KOG0951|consen 1155 LYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDL 1229 (1674)
T ss_pred eecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccch
Confidence 4566778899999999999987654433 4556789999997665 5688888776 5777888888755443
Q ss_pred HHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccc
Q psy7773 635 ALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHH 682 (1281)
Q Consensus 635 ~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~ 682 (1281)
.+ ...-+|+|+|++.+-... .-...++.|+||.|-+.+..
T Consensus 1230 kl-----~~~~~vii~tpe~~d~lq---~iQ~v~l~i~d~lh~igg~~ 1269 (1674)
T KOG0951|consen 1230 KL-----LQKGQVIISTPEQWDLLQ---SIQQVDLFIVDELHLIGGVY 1269 (1674)
T ss_pred HH-----hhhcceEEechhHHHHHh---hhhhcceEeeehhhhhcccC
Confidence 33 246789999999875442 22357899999999998544
No 326
>KOG0952|consensus
Probab=95.49 E-value=0.067 Score=67.53 Aligned_cols=119 Identities=19% Similarity=0.146 Sum_probs=83.7
Q ss_pred HhhhCCCeEEEEeccHHHHHHHHHHHHhC----CC-------------------cEEEecCCCCHHHHHHHHHHhcCCCC
Q psy7773 180 KFKETKHRVLMFCQMTQLMTILEDYFIWR----DF-------------------SYLRLDGTTKSEDRGELLRKFNEPES 236 (1281)
Q Consensus 180 ~~~~~~~kvlIFs~~~~~~~~l~~~l~~~----g~-------------------~~~~~~g~~~~~~R~~~i~~F~~~~~ 236 (1281)
+....|+.|+||+..+...-..+..|... |. ....-|.++.-.+|+-+-+-|..+.-
T Consensus 344 e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i 423 (1230)
T KOG0952|consen 344 EFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHI 423 (1230)
T ss_pred HHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCc
Confidence 34468999999998875444444443222 22 23445777888999999999987544
Q ss_pred CceEEEEeccccccCCCCCCCCEEEEeCCCCCcch----------hhHHhHhhhhcCCCCeEEEEEEEeccchHH
Q psy7773 237 KYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQ----------DLQAQDRAHRIGQKNEVRVLRLITVNSVEE 301 (1281)
Q Consensus 237 ~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~----------~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee 301 (1281)
. +|+||...+.|+||++-..+|-=...|+++. ..|-.||++|.+=...-..+-+.+.+.++-
T Consensus 424 --~-vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~ 495 (1230)
T KOG0952|consen 424 --K-VLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDH 495 (1230)
T ss_pred --e-EEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHH
Confidence 3 5899999999999998878887788888765 679999999986444433444444454443
No 327
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=95.41 E-value=0.13 Score=65.69 Aligned_cols=108 Identities=14% Similarity=0.075 Sum_probs=78.8
Q ss_pred CCeEEEEeccHHHHHHHHHHHHhC-----CCcEEEecCCCCHH---------------------HHHHHHHHhcCCCCCc
Q psy7773 185 KHRVLMFCQMTQLMTILEDYFIWR-----DFSYLRLDGTTKSE---------------------DRGELLRKFNEPESKY 238 (1281)
Q Consensus 185 ~~kvlIFs~~~~~~~~l~~~l~~~-----g~~~~~~~g~~~~~---------------------~R~~~i~~F~~~~~~~ 238 (1281)
+.|.+|||.++.....+...|... +...+.++|+.+.. ....++++|.++ ..+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~-~~~ 592 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE-ENP 592 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC-CCc
Confidence 589999999998888777776544 34556677765432 224789999864 345
Q ss_pred eEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhc-CCCC-eEEEEEEEe
Q psy7773 239 FIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRI-GQKN-EVRVLRLIT 295 (1281)
Q Consensus 239 ~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~-Gq~~-~V~v~~l~~ 295 (1281)
.| |+......+|++.+.++++++.-|--+. ...|++||+.|+ +..+ ...|+.|+.
T Consensus 593 ~i-lIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 593 KL-LIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred eE-EEEEcccccccCCCccceEEEecccccc-HHHHHHHHhccccCCCCCCEEEEECcC
Confidence 55 4555999999999999999887776654 578999999995 4433 367777654
No 328
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.39 E-value=0.13 Score=64.15 Aligned_cols=139 Identities=13% Similarity=0.150 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCC--CCCEEEEeCCccHHH-HHHHHHHHCCCCcEE
Q psy7773 548 EYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKN--LGPYLVIVPLSTLSN-WVLEFEKWAPSANVV 624 (1281)
Q Consensus 548 ~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~--~~~~LIV~P~s~l~~-W~~E~~~~~p~~~~~ 624 (1281)
+.|+.++..++. +.-.||.-..|+|||.++..++..+...... ..++++++|+.-... ...-+..-...+..
T Consensus 148 ~~Qk~A~~~al~----~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~- 222 (586)
T TIGR01447 148 NWQKVAVALALK----SNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAA- 222 (586)
T ss_pred HHHHHHHHHHhh----CCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccccc-
Confidence 799999877764 4567889999999999998888877654322 246899999866533 33323222111110
Q ss_pred EEeCCHHHHHHHHhhhccCCccEEEechHHHhhccc--------ccccCceeEEEEeCCccccccchHHHHHHHhhhccC
Q psy7773 625 AYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKS--------VLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSS 696 (1281)
Q Consensus 625 ~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~--------~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~ 696 (1281)
...... ...+-..|...+..... .-....+++||||||-.+-.. .+...+..+ +..
T Consensus 223 ----~~~~~~---------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~~--l~~~ll~al-~~~ 286 (586)
T TIGR01447 223 ----AEALIA---------ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDLP--LMAKLLKAL-PPN 286 (586)
T ss_pred ----chhhhh---------ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCHH--HHHHHHHhc-CCC
Confidence 000000 00011122222211100 011236899999999988643 234445443 667
Q ss_pred cEEEeecCCCC
Q psy7773 697 HRVLLTGTPLQ 707 (1281)
Q Consensus 697 ~rllLTgTPl~ 707 (1281)
.+++|.|=|.|
T Consensus 287 ~rlIlvGD~~Q 297 (586)
T TIGR01447 287 TKLILLGDKNQ 297 (586)
T ss_pred CEEEEECChhh
Confidence 88999999876
No 329
>KOG0353|consensus
Probab=95.38 E-value=0.02 Score=63.54 Aligned_cols=91 Identities=13% Similarity=0.128 Sum_probs=78.4
Q ss_pred CCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEEeC
Q psy7773 185 KHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFD 264 (1281)
Q Consensus 185 ~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d 264 (1281)
|..-||||-+..--+.+...|+.+||..-.+|..+.+.+|...-..|-.+ .++| ++.|-+.|.||+-+....||+-.
T Consensus 317 gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~--eiqv-ivatvafgmgidkpdvrfvihhs 393 (695)
T KOG0353|consen 317 GQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAG--EIQV-IVATVAFGMGIDKPDVRFVIHHS 393 (695)
T ss_pred CCcceEEEeccccHHHHHHHHHhcCccccccccccCcccccccccccccc--ceEE-EEEEeeecccCCCCCeeEEEecc
Confidence 56679999888888999999999999999999999999988888888764 3555 66778999999999999999999
Q ss_pred CCCCcchhhHHhHh
Q psy7773 265 SDWNPHQDLQAQDR 278 (1281)
Q Consensus 265 ~~wnp~~~~Qa~gR 278 (1281)
+|-+-..|-||-.|
T Consensus 394 l~ksienyyqasar 407 (695)
T KOG0353|consen 394 LPKSIENYYQASAR 407 (695)
T ss_pred cchhHHHHHHHHHH
Confidence 99999999995443
No 330
>PRK04296 thymidine kinase; Provisional
Probab=95.35 E-value=0.051 Score=57.93 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=25.6
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q psy7773 567 GILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVP 603 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P 603 (1281)
.++.-+||+|||..++.++..+... ..+++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~---g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEER---GMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHc---CCeEEEEec
Confidence 3678899999999999888776532 347777765
No 331
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.31 E-value=0.16 Score=65.44 Aligned_cols=135 Identities=22% Similarity=0.190 Sum_probs=80.0
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCc
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSAN 622 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~ 622 (1281)
+..|.+-|.+++..+.. +...+|....|+|||.++-+++..+. ..+...++++++|+........+.. +..
T Consensus 321 ~~~l~~~Q~~Ai~~~~~----~~~~iitGgpGTGKTt~l~~i~~~~~-~~~~~~~v~l~ApTg~AA~~L~e~~----g~~ 391 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQ----HKVVILTGGPGTGKTTITRAIIELAE-ELGGLLPVGLAAPTGRAAKRLGEVT----GLT 391 (720)
T ss_pred CCCCCHHHHHHHHHHHh----CCeEEEECCCCCCHHHHHHHHHHHHH-HcCCCceEEEEeCchHHHHHHHHhc----CCc
Confidence 45799999999987753 44678999999999988877766554 3222257888999877766544421 100
Q ss_pred EEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEEee
Q psy7773 623 VVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLT 702 (1281)
Q Consensus 623 ~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllLT 702 (1281)
...+ .+ .+ ... ... . ..... -.....++||||||+.+-.. .+...+.. .+...+++|-
T Consensus 392 a~Ti-----h~-lL-~~~--~~~--~------~~~~~--~~~~~~~llIvDEaSMvd~~--~~~~Ll~~-~~~~~rlilv 449 (720)
T TIGR01448 392 ASTI-----HR-LL-GYG--PDT--F------RHNHL--EDPIDCDLLIVDESSMMDTW--LALSLLAA-LPDHARLLLV 449 (720)
T ss_pred cccH-----HH-Hh-hcc--CCc--c------chhhh--hccccCCEEEEeccccCCHH--HHHHHHHh-CCCCCEEEEE
Confidence 0000 00 00 000 000 0 00000 01235789999999998543 23444443 3667899999
Q ss_pred cCCCCC
Q psy7773 703 GTPLQN 708 (1281)
Q Consensus 703 gTPl~n 708 (1281)
|=|-|-
T Consensus 450 GD~~QL 455 (720)
T TIGR01448 450 GDTDQL 455 (720)
T ss_pred Cccccc
Confidence 988773
No 332
>smart00592 BRK domain in transcription and CHROMO domain helicases.
Probab=95.24 E-value=0.019 Score=44.75 Aligned_cols=42 Identities=36% Similarity=0.708 Sum_probs=37.9
Q ss_pred ccccceeecccccccCCCCCCCchhhHhhhhhcCCCCccccC
Q psy7773 440 EDLRITVKETNSDNKLRGEDAPPAKQIKEWLASHPGWEVVME 481 (1281)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1281)
.+..|.+.+..+|..+.|+++|....|++|++.+|++++...
T Consensus 2 ~e~rV~vi~~~tG~~l~g~~aP~~~~l~~WL~~~p~yev~p~ 43 (45)
T smart00592 2 GEERVPVINRETGKKLTGDDAPKAKDLERWLEENPEYEVAPR 43 (45)
T ss_pred CcceeEeeccCCccEeccccCCcHHHHHHHHhcCCCcccCCC
Confidence 356788999999999999999999999999999999988653
No 333
>KOG0329|consensus
Probab=95.15 E-value=0.11 Score=55.09 Aligned_cols=45 Identities=27% Similarity=0.401 Sum_probs=42.5
Q ss_pred EEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCC
Q psy7773 242 LLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKN 286 (1281)
Q Consensus 242 l~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~ 286 (1281)
+++|...|.|++..+.+.+|+||.|-++..|..+.+|++|.|.+-
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkg 346 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 346 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcccccc
Confidence 677899999999999999999999999999999999999999864
No 334
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.10 E-value=0.21 Score=58.99 Aligned_cols=132 Identities=11% Similarity=0.111 Sum_probs=72.3
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHHHhcC-CCCCEEEEeCCc--cHHHHHHHHHHHCCCCcEEEEeCCHHHHHHHHhhhcc
Q psy7773 566 NGILADEMGLGKTVQTIALLTYLMEKKK-NLGPYLVIVPLS--TLSNWVLEFEKWAPSANVVAYKGSPLARRALQGRMKN 642 (1281)
Q Consensus 566 ~gILademGlGKTi~ai~ll~~l~~~~~-~~~~~LIV~P~s--~l~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~ 642 (1281)
..++.-.+|.|||.++.-++.++..... ...++.+|+=.. .-..|+ +..|+-.+.+-+.
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ--L~~~a~~lgvpv~---------------- 237 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ--IQTYGDIMGIPVK---------------- 237 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH--HHHHhhcCCcceE----------------
Confidence 4567899999999999888777654322 223454444432 123333 4455422222111
Q ss_pred CCccEEEechHHHhhcccccccCceeEEEEeCCccccccchH---HHHHHHhhh-ccCcEEEeecCCCCCChhHHHHHHh
Q psy7773 643 SKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCK---LTQTLNTFY-NSSHRVLLTGTPLQNKLPELWALLN 718 (1281)
Q Consensus 643 ~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~---~~~~l~~~~-~~~~rllLTgTPl~n~~~el~~ll~ 718 (1281)
++-++..+......+ .+.++||||++.+....... +...+.... .....|.|+||--++.+.+++.-..
T Consensus 238 -----~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~ 310 (388)
T PRK12723 238 -----AIESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFS 310 (388)
T ss_pred -----eeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhc
Confidence 112233332222222 25799999999998654322 222333221 1134578999988888887776665
Q ss_pred hhcC
Q psy7773 719 FLLP 722 (1281)
Q Consensus 719 fl~p 722 (1281)
.+.+
T Consensus 311 ~~~~ 314 (388)
T PRK12723 311 PFSY 314 (388)
T ss_pred CCCC
Confidence 5433
No 335
>PLN03025 replication factor C subunit; Provisional
Probab=95.04 E-value=0.29 Score=56.84 Aligned_cols=24 Identities=42% Similarity=0.483 Sum_probs=21.1
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHH
Q psy7773 566 NGILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 566 ~gILademGlGKTi~ai~ll~~l~ 589 (1281)
+-||..+.|+|||..+.+++..+.
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 468999999999999999888875
No 336
>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function.
Probab=94.88 E-value=0.014 Score=49.00 Aligned_cols=42 Identities=36% Similarity=0.647 Sum_probs=29.0
Q ss_pred cCCCcccccCchHHhhhhHHHHHHHHHHHHhcccccccccccccCCCc
Q psy7773 1095 KELPDWMVKDDDEVENSMYEEEREREKEEALMGRGSRQRKQVDYTDSL 1142 (1281)
Q Consensus 1095 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~r~~~~~~~~~ 1142 (1281)
+.-|++|.+ +.+..|++ .++.....+|+|||.||+|+|.+..
T Consensus 21 ~~~~~yWe~----LLr~~ye~--~q~e~~~~LGKGKR~RKqV~y~~~~ 62 (66)
T PF06465_consen 21 STDPNYWEK----LLRHRYEQ--QQEEEEKALGKGKRSRKQVNYAEED 62 (66)
T ss_pred ccchHHHHH----HHHHHHHH--HHHHHHHHhcccccccccccccccc
Confidence 344555543 55556664 3445667899999999999999753
No 337
>PRK06526 transposase; Provisional
Probab=94.85 E-value=0.069 Score=59.55 Aligned_cols=109 Identities=18% Similarity=0.227 Sum_probs=63.2
Q ss_pred HHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCcEEEEeCCHH
Q psy7773 552 KGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSANVVAYKGSPL 631 (1281)
Q Consensus 552 ~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~~~~~~g~~~ 631 (1281)
.+..|+- .+.|.+|..++|+|||..+.++...+... + .+++++ ....|..++..... .|.
T Consensus 90 ~~~~fi~----~~~nlll~Gp~GtGKThLa~al~~~a~~~-g--~~v~f~----t~~~l~~~l~~~~~-------~~~-- 149 (254)
T PRK06526 90 GTLDFVT----GKENVVFLGPPGTGKTHLAIGLGIRACQA-G--HRVLFA----TAAQWVARLAAAHH-------AGR-- 149 (254)
T ss_pred hcCchhh----cCceEEEEeCCCCchHHHHHHHHHHHHHC-C--Cchhhh----hHHHHHHHHHHHHh-------cCc--
Confidence 3445653 46678999999999999999998877643 2 244442 23456666543210 010
Q ss_pred HHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccc---hHHHHHHHhhhccCcEEEeecCC
Q psy7773 632 ARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHH---CKLTQTLNTFYNSSHRVLLTGTP 705 (1281)
Q Consensus 632 ~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~---s~~~~~l~~~~~~~~rllLTgTP 705 (1281)
+..... .+ ..+++|||||.|.+.... ..++..+...+.....++.|..|
T Consensus 150 --------------------~~~~l~---~l--~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~ 201 (254)
T PRK06526 150 --------------------LQAELV---KL--GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKP 201 (254)
T ss_pred --------------------HHHHHH---Hh--ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 000000 01 246899999999986433 23566665544444455556565
No 338
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.79 E-value=0.11 Score=58.60 Aligned_cols=26 Identities=31% Similarity=0.300 Sum_probs=21.1
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHH
Q psy7773 565 LNGILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 565 ~~gILademGlGKTi~ai~ll~~l~~ 590 (1281)
.+.||.-++|+|||..|-++...+..
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 34589999999999999888776653
No 339
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.74 E-value=0.086 Score=59.52 Aligned_cols=152 Identities=21% Similarity=0.237 Sum_probs=76.8
Q ss_pred cccCccc-HHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHH-----------
Q psy7773 541 MVNGKLK-EYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLS----------- 608 (1281)
Q Consensus 541 ~~~~~L~-~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~----------- 608 (1281)
.++..++ -+|.-++.-++. . .-.-..|...-|+|||+-|++...+.....+....++|.-|..-+.
T Consensus 223 vwGi~prn~eQ~~ALdlLld-~-dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eE 300 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLD-D-DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEE 300 (436)
T ss_pred hhccCcccHHHHHHHHHhcC-C-CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchh
Confidence 4455555 488888776653 1 1112456778999999999877666555555666766666644332
Q ss_pred ----HHHHHHHHHCCCCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchH
Q psy7773 609 ----NWVLEFEKWAPSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCK 684 (1281)
Q Consensus 609 ----~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~ 684 (1281)
-|..-+-.- +-+..-..... ...+..........|--.||=. - ..+.-.+||||||+++..+.
T Consensus 301 eKm~PWmq~i~Dn---LE~L~~~~~~~-~~~l~~~l~~~~iev~alt~IR---G----RSl~~~FiIIDEaQNLTphe-- 367 (436)
T COG1875 301 EKMGPWMQAIFDN---LEVLFSPNEPG-DRALEEILSRGRIEVEALTYIR---G----RSLPDSFIIIDEAQNLTPHE-- 367 (436)
T ss_pred hhccchHHHHHhH---HHHHhcccccc-hHHHHHHHhccceeeeeeeeec---c----cccccceEEEehhhccCHHH--
Confidence 243332110 00000000000 1111111111222222222211 1 12244689999999986544
Q ss_pred HHHHHHhhhccCcEEEeecCCCCC
Q psy7773 685 LTQTLNTFYNSSHRVLLTGTPLQN 708 (1281)
Q Consensus 685 ~~~~l~~~~~~~~rllLTgTPl~n 708 (1281)
.+.+..-.-..-++.|||-|-|-
T Consensus 368 -ikTiltR~G~GsKIVl~gd~aQi 390 (436)
T COG1875 368 -LKTILTRAGEGSKIVLTGDPAQI 390 (436)
T ss_pred -HHHHHHhccCCCEEEEcCCHHHc
Confidence 23332222456789999998763
No 340
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.73 E-value=0.072 Score=52.86 Aligned_cols=44 Identities=23% Similarity=0.107 Sum_probs=30.2
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHH
Q psy7773 565 LNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWV 611 (1281)
Q Consensus 565 ~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~ 611 (1281)
...+|.-++|+|||..+..++..+.... ..++++.+......|.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~~~~~~~~~~~ 46 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEVL 46 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC---CCEEEECCEEccccCH
Confidence 4567899999999999988876654211 3577777765554443
No 341
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=94.70 E-value=0.16 Score=67.13 Aligned_cols=90 Identities=14% Similarity=0.251 Sum_probs=63.0
Q ss_pred HHHHHHHHh-hhCCCeEEEEeccHHHHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 173 LLDRILPKF-KETKHRVLMFCQMTQLMTILEDYFIW----RDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 173 ~L~~ll~~~-~~~~~kvlIFs~~~~~~~~l~~~l~~----~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
.+...|..+ ...+.++|||+.+...++.+...|.. .++.+. ..+.. ..|..+++.|.++... +|+++.+
T Consensus 661 ~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l--~q~~~-~~r~~ll~~F~~~~~~---iLlgt~s 734 (850)
T TIGR01407 661 EIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVL--AQGIN-GSRAKIKKRFNNGEKA---ILLGTSS 734 (850)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceEE--ecCCC-ccHHHHHHHHHhCCCe---EEEEcce
Confidence 344444443 33557899999999999999988865 344432 22222 4789999999875543 5667899
Q ss_pred cccCCCCCCCC--EEEEeCCCCC
Q psy7773 248 GGLGLNLQAAD--TVIIFDSDWN 268 (1281)
Q Consensus 248 ~~~GlnL~~a~--~vi~~d~~wn 268 (1281)
.++|+++.+.. .||+.-+|+-
T Consensus 735 f~EGVD~~g~~l~~viI~~LPf~ 757 (850)
T TIGR01407 735 FWEGVDFPGNGLVCLVIPRLPFA 757 (850)
T ss_pred eecccccCCCceEEEEEeCCCCC
Confidence 99999999544 6777777763
No 342
>KOG0991|consensus
Probab=94.66 E-value=0.065 Score=56.49 Aligned_cols=103 Identities=19% Similarity=0.249 Sum_probs=60.1
Q ss_pred cCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCcEEEEeCCHHHHHHHHhhhc
Q psy7773 562 NNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSANVVAYKGSPLARRALQGRMK 641 (1281)
Q Consensus 562 ~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~ 641 (1281)
.+-.+-|++.++|.|||..+.+++..|+-.. ...-+.... . ..
T Consensus 46 gnmP~liisGpPG~GKTTsi~~LAr~LLG~~-----------------~ke~vLELN----A----------------Sd 88 (333)
T KOG0991|consen 46 GNMPNLIISGPPGTGKTTSILCLARELLGDS-----------------YKEAVLELN----A----------------SD 88 (333)
T ss_pred CCCCceEeeCCCCCchhhHHHHHHHHHhChh-----------------hhhHhhhcc----C----------------cc
Confidence 4455679999999999999999888876210 111111100 0 01
Q ss_pred cCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEEe
Q psy7773 642 NSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLL 701 (1281)
Q Consensus 642 ~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllL 701 (1281)
..+.|||=.+..+|...+-.+..-....||+|||+.|....-+..+.-..+|.+..|+.|
T Consensus 89 eRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFal 148 (333)
T KOG0991|consen 89 ERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFAL 148 (333)
T ss_pred ccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhh
Confidence 122344444444555555556666788999999999875443333333345555555544
No 343
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.63 E-value=0.15 Score=61.14 Aligned_cols=41 Identities=20% Similarity=0.090 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhcCCC-C--eEEecCCCCCHHHHHHHHHHHHHH
Q psy7773 550 QIKGLEWMVSLYNNNL-N--GILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 550 Q~~gv~~l~~~~~~~~-~--gILademGlGKTi~ai~ll~~l~~ 590 (1281)
|..++..+.....++. + -|+..+.|+|||..|..++..+..
T Consensus 23 Qe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 23 QDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 4444444444333333 2 389999999999999998887753
No 344
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.60 E-value=0.22 Score=62.36 Aligned_cols=141 Identities=13% Similarity=0.180 Sum_probs=80.8
Q ss_pred ccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC-CCCCEEEEeCCccHHHHHHH-HHHHCCCCcE
Q psy7773 546 LKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKK-NLGPYLVIVPLSTLSNWVLE-FEKWAPSANV 623 (1281)
Q Consensus 546 L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~-~~~~~LIV~P~s~l~~W~~E-~~~~~p~~~~ 623 (1281)
.-+.|+.++.-.+. +.-.||.-.+|+|||.++..++..+..... ...++++++|+.-...=..| +..-...+.+
T Consensus 153 ~~d~Qk~Av~~a~~----~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhc----CCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 45899999976653 456788999999999999888887765332 23468888997766443333 2221111110
Q ss_pred EEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--------cccccCceeEEEEeCCccccccchHHHHHHHhhhcc
Q psy7773 624 VAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--------SVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNS 695 (1281)
Q Consensus 624 ~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--------~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~ 695 (1281)
....+. .+..-..|...+.... ..-....+++||||||-.+-.. .+...+..+ +.
T Consensus 229 -----~~~~~~---------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~--lm~~ll~al-~~ 291 (615)
T PRK10875 229 -----TDEQKK---------RIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLP--MMARLIDAL-PP 291 (615)
T ss_pred -----chhhhh---------cCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcccHH--HHHHHHHhc-cc
Confidence 000000 0001112222222110 0112236799999999988532 334445544 67
Q ss_pred CcEEEeecCCCC
Q psy7773 696 SHRVLLTGTPLQ 707 (1281)
Q Consensus 696 ~~rllLTgTPl~ 707 (1281)
..|++|-|-|-|
T Consensus 292 ~~rlIlvGD~~Q 303 (615)
T PRK10875 292 HARVIFLGDRDQ 303 (615)
T ss_pred CCEEEEecchhh
Confidence 789999998876
No 345
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.49 E-value=2.1 Score=55.73 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=41.1
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC-CCCCEEEEeCCcc
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKK-NLGPYLVIVPLST 606 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~-~~~~~LIV~P~s~ 606 (1281)
.|-|-|.++|.+ .....++-...|+|||.+.+.-+++|+...+ ....+|+|+-+.-
T Consensus 9 ~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~k 65 (721)
T PRK11773 9 SLNDKQREAVAA------PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNK 65 (721)
T ss_pred hcCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHH
Confidence 588999998853 2335566667999999999999999986433 3345788877443
No 346
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.30 E-value=0.25 Score=54.25 Aligned_cols=93 Identities=22% Similarity=0.203 Sum_probs=56.1
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCcEEEEeCCHHHHHHHHhhhcc
Q psy7773 563 NNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSANVVAYKGSPLARRALQGRMKN 642 (1281)
Q Consensus 563 ~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~ 642 (1281)
.+.+.+|.-+.|+|||..+.++..++... +..++.++.+.+..|..++...
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~------------------------- 87 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEER----GKSAIYLPLAELAQADPEVLEG------------------------- 87 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhc----CCcEEEEeHHHHHHhHHHHHhh-------------------------
Confidence 34456889999999999998887776532 2224445544444433111100
Q ss_pred CCccEEEechHHHhhcccccccCceeEEEEeCCcccccc---chHHHHHHHhhhccCcEEEeecCC
Q psy7773 643 SKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNH---HCKLTQTLNTFYNSSHRVLLTGTP 705 (1281)
Q Consensus 643 ~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~---~s~~~~~l~~~~~~~~rllLTgTP 705 (1281)
+. ..++|||||+|.+... ...+...+........++++|+|+
T Consensus 88 -------------------~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~ 132 (226)
T TIGR03420 88 -------------------LE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRA 132 (226)
T ss_pred -------------------cc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCC
Confidence 01 1358999999998753 234555555443445678888875
No 347
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.23 E-value=0.13 Score=60.07 Aligned_cols=41 Identities=12% Similarity=0.255 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhcCCCC---eEEecCCCCCHHHHHHHHHHHHHH
Q psy7773 550 QIKGLEWMVSLYNNNLN---GILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 550 Q~~gv~~l~~~~~~~~~---gILademGlGKTi~ai~ll~~l~~ 590 (1281)
|..++..+...+..+.. -++..+.|+|||..+..++..++.
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 45566677776666553 478999999999999999988874
No 348
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.73 E-value=0.067 Score=63.49 Aligned_cols=107 Identities=19% Similarity=0.243 Sum_probs=56.7
Q ss_pred cCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC-CccHHHHHHHHH----HHCCCCcEEEEeCCHHHHHHHHh-hhccCC
Q psy7773 571 DEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVP-LSTLSNWVLEFE----KWAPSANVVAYKGSPLARRALQG-RMKNSK 644 (1281)
Q Consensus 571 demGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P-~s~l~~W~~E~~----~~~p~~~~~~~~g~~~~r~~~~~-~~~~~~ 644 (1281)
..||+|||+++.++|.+++..+ .+.+|+.|- ++++..-...|. .-+--...+.|.|....-+.+.. ......
T Consensus 4 matgsgkt~~ma~lil~~y~kg--yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehnd~ 81 (812)
T COG3421 4 MATGSGKTLVMAGLILECYKKG--YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHNDA 81 (812)
T ss_pred cccCCChhhHHHHHHHHHHHhc--hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccCCc
Confidence 4699999999999999987443 346666665 555544333321 11100111222222111110000 013456
Q ss_pred ccEEEechHHHhhcccc-------cccC--ceeEEEEeCCcccc
Q psy7773 645 FNVLLTTYEFIIKDKSV-------LSKI--QWKCMIIDEGHRMK 679 (1281)
Q Consensus 645 ~~vvItTye~l~~~~~~-------l~~~--~w~~vIvDEaHr~k 679 (1281)
..|+.||.+.|..+... +... .--+++-|||||+.
T Consensus 82 iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln 125 (812)
T COG3421 82 IEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLN 125 (812)
T ss_pred eEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhh
Confidence 77899998888665211 1111 12256789999984
No 349
>PF07533 BRK: BRK domain; InterPro: IPR006576 BRK is a domain of unknown function found only in the metazoa and in association with CHROMO domain (IPR000953 from INTERPRO) and DEAD/DEAH box helicase domain (IPR011545 from INTERPRO).; GO: 0005515 protein binding, 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2DL6_A 2CKA_A 2V0F_A 2V0E_A 2CKC_A.
Probab=93.50 E-value=0.037 Score=43.43 Aligned_cols=42 Identities=36% Similarity=0.774 Sum_probs=33.2
Q ss_pred cccccceeecccccccCCCCCCCchhhHhhhhhcCCCCcccc
Q psy7773 439 LEDLRITVKETNSDNKLRGEDAPPAKQIKEWLASHPGWEVVM 480 (1281)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1281)
..|+.|.+.+..+|..|.|+++|....|..|++.+|+|+++.
T Consensus 3 ~~eerV~Vi~~~tGk~l~G~~AP~~~~L~~WL~~~P~y~V~P 44 (46)
T PF07533_consen 3 TGEERVPVINRKTGKRLTGDEAPKLKELEEWLEEHPGYEVAP 44 (46)
T ss_dssp TTTSB--EEETTTTEEE-CCCS-BCCCHHHHHHH-TTEEESH
T ss_pred CCcceeEeEECCCCCCcccccCcCHHHHHHHHHHCcCceeCC
Confidence 346789999999999999999999999999999999998753
No 350
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.41 E-value=0.32 Score=61.00 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEecCCCCCHHHHHHHHHHHHHH
Q psy7773 550 QIKGLEWMVSLYNNNL--NG-ILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 550 Q~~gv~~l~~~~~~~~--~g-ILademGlGKTi~ai~ll~~l~~ 590 (1281)
|...+..|...+.++. +. ||....|+|||..+..|...+..
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4444544444443332 33 78999999999999988888763
No 351
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=93.35 E-value=0.41 Score=63.65 Aligned_cols=95 Identities=19% Similarity=0.290 Sum_probs=62.7
Q ss_pred HHHHHHHHHhh-hCCCeEEEEeccHHHHHHHHHHHHhCCC--cEE-EecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 172 ELLDRILPKFK-ETKHRVLMFCQMTQLMTILEDYFIWRDF--SYL-RLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 172 ~~L~~ll~~~~-~~~~kvlIFs~~~~~~~~l~~~l~~~g~--~~~-~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..+.+.|..+. ..+.++|||..+..++..+...|..... .+. ...| ++...|..+++.|..+... +|+.+.+
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg-~~~~~r~~l~~~F~~~~~~---iLlG~~s 813 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQG-VSSGSRARLTKQFQQFDKA---ILLGTSS 813 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecC-CCCCCHHHHHHHHHhcCCe---EEEecCc
Confidence 34455554443 3555777777777888888888765422 122 2233 2223588999999875443 4666799
Q ss_pred cccCCCCCC--CCEEEEeCCCC-Ccc
Q psy7773 248 GGLGLNLQA--ADTVIIFDSDW-NPH 270 (1281)
Q Consensus 248 ~~~GlnL~~--a~~vi~~d~~w-np~ 270 (1281)
..+|+++.+ ...||+.-+|+ +|.
T Consensus 814 FwEGVD~pg~~l~~viI~kLPF~~p~ 839 (928)
T PRK08074 814 FWEGIDIPGDELSCLVIVRLPFAPPD 839 (928)
T ss_pred ccCccccCCCceEEEEEecCCCCCCC
Confidence 999999995 47888988888 454
No 352
>PRK08181 transposase; Validated
Probab=93.29 E-value=0.56 Score=52.71 Aligned_cols=44 Identities=23% Similarity=0.125 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHH
Q psy7773 547 KEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 547 ~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~ 590 (1281)
..-|..++.++-.....+.|.+|..++|+|||..+.++...+..
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~ 132 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIE 132 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 34555555443222346778899999999999999998887764
No 353
>PF13245 AAA_19: Part of AAA domain
Probab=93.16 E-value=0.28 Score=43.59 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=33.5
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHh-cCCCCCEEEEeCCccHHH
Q psy7773 567 GILADEMGLGKTVQTIALLTYLMEK-KKNLGPYLVIVPLSTLSN 609 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~~~-~~~~~~~LIV~P~s~l~~ 609 (1281)
.++-..+|+|||.+++..+.+++.. .....++||++|.....+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~ 56 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAAD 56 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHH
Confidence 4568899999999999999998853 222568999999876644
No 354
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=93.10 E-value=0.56 Score=60.42 Aligned_cols=81 Identities=16% Similarity=0.210 Sum_probs=63.5
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHHhCCCc-EEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCC--CCE
Q psy7773 183 ETKHRVLMFCQMTQLMTILEDYFIWRDFS-YLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQA--ADT 259 (1281)
Q Consensus 183 ~~~~kvlIFs~~~~~~~~l~~~l~~~g~~-~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~--a~~ 259 (1281)
..+.++|||..+-..+..+...|...... .+...|..+ +..+++.|...... .+++.+...++|+|+.+ +..
T Consensus 477 ~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l~~ 551 (654)
T COG1199 477 ASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG--LILVGGGSFWEGVDFPGDALRL 551 (654)
T ss_pred hcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCeeE
Confidence 45558999999999999999999877663 455666665 44899999876543 57888899999999994 578
Q ss_pred EEEeCCCCC
Q psy7773 260 VIIFDSDWN 268 (1281)
Q Consensus 260 vi~~d~~wn 268 (1281)
||+.-.||-
T Consensus 552 vvI~~lPfp 560 (654)
T COG1199 552 VVIVGLPFP 560 (654)
T ss_pred EEEEecCCC
Confidence 899888883
No 355
>PRK08084 DNA replication initiation factor; Provisional
Probab=92.95 E-value=0.57 Score=51.76 Aligned_cols=25 Identities=20% Similarity=-0.029 Sum_probs=20.4
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHH
Q psy7773 565 LNGILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 565 ~~gILademGlGKTi~ai~ll~~l~ 589 (1281)
.+.+|..+.|+|||-.+.++..++.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3568999999999988887777665
No 356
>PRK06835 DNA replication protein DnaC; Validated
Probab=92.95 E-value=0.84 Score=52.90 Aligned_cols=48 Identities=23% Similarity=0.189 Sum_probs=35.0
Q ss_pred CcccHHHHHHHHHHHHh----hcCCCCeEEecCCCCCHHHHHHHHHHHHHHh
Q psy7773 544 GKLKEYQIKGLEWMVSL----YNNNLNGILADEMGLGKTVQTIALLTYLMEK 591 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~----~~~~~~gILademGlGKTi~ai~ll~~l~~~ 591 (1281)
+.++.++..++.++... -..+.+.+|..++|+|||..+.+++..++..
T Consensus 159 ~~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~ 210 (329)
T PRK06835 159 LSPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDR 210 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 35777777777644432 2245667889999999999999999888743
No 357
>PRK08116 hypothetical protein; Validated
Probab=92.93 E-value=0.87 Score=51.33 Aligned_cols=44 Identities=25% Similarity=0.255 Sum_probs=30.9
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHH
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNW 610 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W 610 (1281)
+.+.+|..++|+|||..+.+++.++... ..+++++.-..++..+
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~~~~ll~~i 157 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVNFPQLLNRI 157 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHHHH
Confidence 3457899999999999999999998754 2466555433333433
No 358
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.92 E-value=1.3 Score=51.83 Aligned_cols=127 Identities=12% Similarity=0.112 Sum_probs=66.9
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC-C---ccHHHHHHHHHHHCCCCcEEEEeCCHHHHHHHHhhhcc
Q psy7773 567 GILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVP-L---STLSNWVLEFEKWAPSANVVAYKGSPLARRALQGRMKN 642 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P-~---s~l~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~ 642 (1281)
..|.-.+|+|||..+..++..+... ..++++|.- . ..+.||. .|....
T Consensus 244 I~LVGptGvGKTTTiaKLA~~L~~~---GkkVglI~aDt~RiaAvEQLk----~yae~l--------------------- 295 (436)
T PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITTDHSRIGTVQQLQ----DYVKTI--------------------- 295 (436)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEEecCCcchHHHHHHH----HHhhhc---------------------
Confidence 4577889999999998888777522 234555544 2 2334554 232111
Q ss_pred CCccEE-EechHHHhhccccccc-CceeEEEEeCCccccccchHHH---HHHHhhhccCcEEEeecCCCCCChhHHHHHH
Q psy7773 643 SKFNVL-LTTYEFIIKDKSVLSK-IQWKCMIIDEGHRMKNHHCKLT---QTLNTFYNSSHRVLLTGTPLQNKLPELWALL 717 (1281)
Q Consensus 643 ~~~~vv-ItTye~l~~~~~~l~~-~~w~~vIvDEaHr~kn~~s~~~---~~l~~~~~~~~rllLTgTPl~n~~~el~~ll 717 (1281)
.+.++ +.+...+......+.. .++++||||-+-+.-+....+. +.+....+....|.|+||--.+.+.++...+
T Consensus 296 -gipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F 374 (436)
T PRK11889 296 -GFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNF 374 (436)
T ss_pred -CCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHh
Confidence 12222 2233334333333332 2579999999988665443322 2222221122235578876666666666655
Q ss_pred hhhcC
Q psy7773 718 NFLLP 722 (1281)
Q Consensus 718 ~fl~p 722 (1281)
+.+..
T Consensus 375 ~~~~i 379 (436)
T PRK11889 375 KDIHI 379 (436)
T ss_pred cCCCC
Confidence 55433
No 359
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=92.84 E-value=0.58 Score=52.23 Aligned_cols=115 Identities=22% Similarity=0.243 Sum_probs=68.6
Q ss_pred HHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCcEEEEeCCH
Q psy7773 551 IKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSANVVAYKGSP 630 (1281)
Q Consensus 551 ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~~~~~~g~~ 630 (1281)
...+.-+...+.++.|.+|...+|+|||..++|+...+. ..+ .+++++.-+.++.++...+.. |..
T Consensus 92 l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g--~sv~f~~~~el~~~Lk~~~~~-----------~~~ 157 (254)
T COG1484 92 LEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAG--ISVLFITAPDLLSKLKAAFDE-----------GRL 157 (254)
T ss_pred HHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcC--CeEEEEEHHHHHHHHHHHHhc-----------Cch
Confidence 344444444555788889999999999999999999998 432 366666655555555544432 111
Q ss_pred HHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccc---hHHHHHHHhhhccCcEEEeecCC
Q psy7773 631 LARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHH---CKLTQTLNTFYNSSHRVLLTGTP 705 (1281)
Q Consensus 631 ~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~---s~~~~~l~~~~~~~~rllLTgTP 705 (1281)
.. .|.+. -...+++||||.-...... +.+.+.+...+....-++.|-.|
T Consensus 158 ~~---------------------~l~~~-----l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~~~tsN~~ 209 (254)
T COG1484 158 EE---------------------KLLRE-----LKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSLIITSNLS 209 (254)
T ss_pred HH---------------------HHHHH-----hhcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhccceeecCCC
Confidence 10 11000 1257899999988765443 44555555554444444444343
No 360
>CHL00181 cbbX CbbX; Provisional
Probab=92.83 E-value=0.22 Score=56.65 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=21.8
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHH
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l~~ 590 (1281)
+.+.+|.-++|+|||..|-++...+..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~ 85 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYK 85 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 334588999999999999988777654
No 361
>COG4889 Predicted helicase [General function prediction only]
Probab=92.81 E-value=0.35 Score=59.91 Aligned_cols=85 Identities=26% Similarity=0.281 Sum_probs=66.3
Q ss_pred CcEEEecCCCCHHHHHHHHHHhcC-CCCCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCe-
Q psy7773 210 FSYLRLDGTTKSEDRGELLRKFNE-PESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNE- 287 (1281)
Q Consensus 210 ~~~~~~~g~~~~~~R~~~i~~F~~-~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~- 287 (1281)
+.+-.++|.|...+|..+...-+. .+..|+ +|-+.+++++|++++.-+.||||||--+-....|++||+-|-.-.+.
T Consensus 500 iSi~HvDGtmNal~R~~l~~l~~~~~~neck-IlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~y 578 (1518)
T COG4889 500 ISIDHVDGTMNALERLDLLELKNTFEPNECK-ILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKY 578 (1518)
T ss_pred EEeecccccccHHHHHHHHhccCCCCcchhe-eeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCcc
Confidence 456678999999999777665543 234455 48899999999999999999999999888899999999999866554
Q ss_pred EEEEEEEe
Q psy7773 288 VRVLRLIT 295 (1281)
Q Consensus 288 V~v~~l~~ 295 (1281)
-+|.-.++
T Consensus 579 GYIILPIa 586 (1518)
T COG4889 579 GYIILPIA 586 (1518)
T ss_pred ceEEEEec
Confidence 34444443
No 362
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=92.67 E-value=1.7 Score=44.97 Aligned_cols=45 Identities=20% Similarity=0.271 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEecCCCCCHHHHHHHHHHHHHHhcCC
Q psy7773 550 QIKGLEWMVSLYNNNL--NG-ILADEMGLGKTVQTIALLTYLMEKKKN 594 (1281)
Q Consensus 550 Q~~gv~~l~~~~~~~~--~g-ILademGlGKTi~ai~ll~~l~~~~~~ 594 (1281)
|...+..+...+.++. .. |+..+.|+||+..|..++..++.....
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~ 49 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPN 49 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-C
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 5566666666665543 23 788999999999999999988755433
No 363
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.65 E-value=0.37 Score=61.69 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.4
Q ss_pred EEecCCCCCHHHHHHHHHHHHHH
Q psy7773 568 ILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~ 590 (1281)
|+..+.|+|||..+-.|+..+..
T Consensus 42 LFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 42 LFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred EEECCCCCCHHHHHHHHHHhccC
Confidence 78999999999999998888764
No 364
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=92.65 E-value=1.2 Score=53.10 Aligned_cols=127 Identities=17% Similarity=0.236 Sum_probs=96.3
Q ss_pred cchHHHHHH-Hhhhhh--hcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEe
Q psy7773 871 SGKFELLDR-ILPKFK--ETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLS 947 (1281)
Q Consensus 871 s~K~~~L~~-lL~~~~--~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~Lls 947 (1281)
..++..... +|+.+. ....++|||...=--.-.|..+|...++.|+.++--++..+-.++-..|..|. ..++|.|
T Consensus 280 d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~--~~iLL~T 357 (442)
T PF06862_consen 280 DARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGR--KPILLYT 357 (442)
T ss_pred hHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCC--ceEEEEE
Confidence 457776655 888877 34467999988777777789999999999999999999999999999999865 4466666
Q ss_pred cccc-ccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCC----CCceEEEEEEeC
Q psy7773 948 TRAG-GLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQ----KNEVRVLRLITV 999 (1281)
Q Consensus 948 T~ag-g~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ----~k~V~V~rli~~ 999 (1281)
-++- =.=..+.++.+||+|.+|-+|.-|...+.-...-.+ ..++.|.-|.++
T Consensus 358 ER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 358 ERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred hHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 6552 244567889999999999999999988865544333 233555555553
No 365
>PRK08727 hypothetical protein; Validated
Probab=92.63 E-value=0.55 Score=51.85 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=20.2
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHH
Q psy7773 567 GILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~~ 590 (1281)
.+|..++|+|||-.+.+++..+..
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~ 67 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQ 67 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 588999999999988888877653
No 366
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=92.55 E-value=1.4 Score=54.74 Aligned_cols=143 Identities=13% Similarity=0.155 Sum_probs=82.1
Q ss_pred ccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc-cHHHHHH----HHH-----
Q psy7773 546 LKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS-TLSNWVL----EFE----- 615 (1281)
Q Consensus 546 L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s-~l~~W~~----E~~----- 615 (1281)
+-|+=..-+..++..|.+...+++++ =|-|||..+..++.++....+ ..++|.+|.. +...-.. -+.
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taP-RqrGKS~iVgi~l~~La~f~G--i~IlvTAH~~~ts~evF~rv~~~le~lg~~ 246 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVP-RRCGKTTIMAIILAAMISFLE--IDIVVQAQRKTMCLTLYNRVETVVHAYQHK 246 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEec-cCCCcHHHHHHHHHHHHHhcC--CeEEEECCChhhHHHHHHHHHHHHHHhccc
Confidence 44555666788888888888777765 899999998877777664332 4788888842 2222222 223
Q ss_pred HHCCCCc-EEEEeCCHHHHHHHHhhhccCCccEEEech----------HHHhhcccccccCceeEEEEeCCccccccchH
Q psy7773 616 KWAPSAN-VVAYKGSPLARRALQGRMKNSKFNVLLTTY----------EFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCK 684 (1281)
Q Consensus 616 ~~~p~~~-~~~~~g~~~~r~~~~~~~~~~~~~vvItTy----------e~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~ 684 (1281)
.|+|... ++...|.. ..|.+..+ .+..+..+......+++||||||+-+...-
T Consensus 247 ~~fp~~~~iv~vkgg~--------------E~I~f~~p~gak~G~sti~F~Ars~~s~RG~~~DLLIVDEAAfI~~~~-- 310 (752)
T PHA03333 247 PWFPEEFKIVTLKGTD--------------ENLEYISDPAAKEGKTTAHFLASSPNAARGQNPDLVIVDEAAFVNPGA-- 310 (752)
T ss_pred cccCCCceEEEeeCCe--------------eEEEEecCcccccCcceeEEecccCCCcCCCCCCEEEEECcccCCHHH--
Confidence 5777553 22233221 11111111 111222344455578999999999997632
Q ss_pred HHHHHHhhhccCcEEEeecCCCC
Q psy7773 685 LTQTLNTFYNSSHRVLLTGTPLQ 707 (1281)
Q Consensus 685 ~~~~l~~~~~~~~rllLTgTPl~ 707 (1281)
+...+=.+......+++.-||..
T Consensus 311 l~aIlP~l~~~~~k~IiISS~~~ 333 (752)
T PHA03333 311 LLSVLPLMAVKGTKQIHISSPVD 333 (752)
T ss_pred HHHHHHHHccCCCceEEEeCCCC
Confidence 23333222234566666667653
No 367
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=92.52 E-value=0.46 Score=55.64 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=26.9
Q ss_pred HHHHHHHhhcCCC--CeEEecCCCCCHHHHHHHHHHHHH
Q psy7773 553 GLEWMVSLYNNNL--NGILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 553 gv~~l~~~~~~~~--~gILademGlGKTi~ai~ll~~l~ 589 (1281)
.+.++.....++. +.++..+.|+|||..+.+++..+.
T Consensus 23 ~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 23 VVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444444444444 568899999999999999888775
No 368
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.42 E-value=0.24 Score=56.35 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=26.3
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCC-CCCEEEEe
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYLMEKKKN-LGPYLVIV 602 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l~~~~~~-~~~~LIV~ 602 (1281)
+.+.+|..++|+|||..|.++...+...... .++++.+.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 3456889999999999998887777543322 23444444
No 369
>PRK06921 hypothetical protein; Provisional
Probab=92.38 E-value=0.68 Score=52.13 Aligned_cols=28 Identities=32% Similarity=0.199 Sum_probs=23.6
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHh
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYLMEK 591 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l~~~ 591 (1281)
+.+.+|.-++|+|||..+.+++..+...
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 4567889999999999999998888744
No 370
>KOG1805|consensus
Probab=92.25 E-value=0.5 Score=59.69 Aligned_cols=146 Identities=19% Similarity=0.237 Sum_probs=85.9
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHCCCCcE
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWAPSANV 623 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~p~~~~ 623 (1281)
.|-.-|+.|+-..+.. ...--|++. +|+|||-+...++..|...+ +.+|+.+=+ +.+.|..--+..+.-. +
T Consensus 669 ~LN~dQr~A~~k~L~a--edy~LI~GM-PGTGKTTtI~~LIkiL~~~g---kkVLLtsyThsAVDNILiKL~~~~i~--~ 740 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAA--EDYALILGM-PGTGKTTTISLLIKILVALG---KKVLLTSYTHSAVDNILIKLKGFGIY--I 740 (1100)
T ss_pred hcCHHHHHHHHHHHhc--cchheeecC-CCCCchhhHHHHHHHHHHcC---CeEEEEehhhHHHHHHHHHHhccCcc--e
Confidence 6778899998766542 333335554 89999999888888887443 477777775 5568877766665421 2
Q ss_pred EEEeCCHHH-HHHHHh---------------hhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHH
Q psy7773 624 VAYKGSPLA-RRALQG---------------RMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQ 687 (1281)
Q Consensus 624 ~~~~g~~~~-r~~~~~---------------~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~ 687 (1281)
+-+ |.... -..... ........||.||.=-+ ....|..-+||++|||||-.+.-+-+.
T Consensus 741 lRL-G~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi--~~plf~~R~FD~cIiDEASQI~lP~~L--- 814 (1100)
T KOG1805|consen 741 LRL-GSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGI--NHPLFVNRQFDYCIIDEASQILLPLCL--- 814 (1100)
T ss_pred eec-CCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCC--CchhhhccccCEEEEccccccccchhh---
Confidence 211 22111 011110 11234455666664333 245566668999999999877544321
Q ss_pred HHHhhhccCcEEEeecCCCC
Q psy7773 688 TLNTFYNSSHRVLLTGTPLQ 707 (1281)
Q Consensus 688 ~l~~~~~~~~rllLTgTPl~ 707 (1281)
--+ ....++.|-|-+.|
T Consensus 815 --gPL-~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 815 --GPL-SFSNKFVLVGDHYQ 831 (1100)
T ss_pred --hhh-hhcceEEEeccccc
Confidence 111 33456777777665
No 371
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.20 E-value=1.1 Score=55.59 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.5
Q ss_pred EEecCCCCCHHHHHHHHHHHHHH
Q psy7773 568 ILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~ 590 (1281)
||..+.|+|||..+..++..|..
T Consensus 42 LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 42 LFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred EEECCCCCCHHHHHHHHHHHhcC
Confidence 78999999999999999888864
No 372
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.15 E-value=1.4 Score=53.09 Aligned_cols=130 Identities=15% Similarity=0.108 Sum_probs=67.9
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCC--CCcEEEEeCCHHHHHHHHhhhccC
Q psy7773 566 NGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAP--SANVVAYKGSPLARRALQGRMKNS 643 (1281)
Q Consensus 566 ~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p--~~~~~~~~g~~~~r~~~~~~~~~~ 643 (1281)
..+++-++|+|||.+++.++.++....+. .++.+|.-..--..=...+..|+- ++.+.+.
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g-~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~----------------- 284 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGK-KKVALITLDTYRIGAVEQLKTYAKIMGIPVEVV----------------- 284 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEECCccHHHHHHHHHHHHHHhCCceEcc-----------------
Confidence 44678889999999998888776512222 344444432210000122333331 1122111
Q ss_pred CccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhh-----ccCcEEEeecCCCCCChhHHHHHHh
Q psy7773 644 KFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFY-----NSSHRVLLTGTPLQNKLPELWALLN 718 (1281)
Q Consensus 644 ~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~-----~~~~rllLTgTPl~n~~~el~~ll~ 718 (1281)
.+...+......+. .+++||||-+-+....... ...+..+. .....++|++|+-.+.+.+++..++
T Consensus 285 ------~~~~~l~~~l~~~~--~~DlVlIDt~G~~~~d~~~-~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~ 355 (424)
T PRK05703 285 ------YDPKELAKALEQLR--DCDVILIDTAGRSQRDKRL-IEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS 355 (424)
T ss_pred ------CCHHhHHHHHHHhC--CCCEEEEeCCCCCCCCHHH-HHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC
Confidence 12222211111121 4799999999876543322 22222222 2244688999988888888877776
Q ss_pred hhcC
Q psy7773 719 FLLP 722 (1281)
Q Consensus 719 fl~p 722 (1281)
.+.+
T Consensus 356 ~~~~ 359 (424)
T PRK05703 356 RLPL 359 (424)
T ss_pred CCCC
Confidence 6544
No 373
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=92.04 E-value=1.1 Score=57.83 Aligned_cols=91 Identities=22% Similarity=0.296 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHhcC----CCCCceEEEEec
Q psy7773 171 FELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR-DFSYLRLDGTTKSEDRGELLRKFNE----PESKYFIFLLST 245 (1281)
Q Consensus 171 ~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~-g~~~~~~~g~~~~~~R~~~i~~F~~----~~~~~~vll~st 245 (1281)
...+.+.|..+...+..++||..+...+..+...|... +.. +...|.. .|..+++.|.+ +++. +|+++
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~---VL~g~ 592 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGS---VLFGL 592 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCe---EEEEe
Confidence 33555555544444445777777777888888887643 333 4456643 47788876653 3332 45666
Q ss_pred cccccCCCCC--CCCEEEEeCCCCC
Q psy7773 246 RAGGLGLNLQ--AADTVIIFDSDWN 268 (1281)
Q Consensus 246 ~~~~~GlnL~--~a~~vi~~d~~wn 268 (1281)
.+..+||++. .++.||+.-+|+-
T Consensus 593 ~sf~EGVD~pGd~l~~vII~kLPF~ 617 (697)
T PRK11747 593 QSFAEGLDLPGDYLTQVIITKIPFA 617 (697)
T ss_pred ccccccccCCCCceEEEEEEcCCCC
Confidence 8999999998 4688999888873
No 374
>PRK07952 DNA replication protein DnaC; Validated
Probab=91.94 E-value=1.3 Score=48.91 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=32.0
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHH
Q psy7773 566 NGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEK 616 (1281)
Q Consensus 566 ~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~ 616 (1281)
+.+|...+|+|||..+.+++.++...+ .+++++ .+..|...+..
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g---~~v~~i----t~~~l~~~l~~ 144 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRG---KSVLII----TVADIMSAMKD 144 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC---CeEEEE----EHHHHHHHHHH
Confidence 568999999999999999999987432 355555 34666666543
No 375
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=91.91 E-value=0.89 Score=57.69 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=32.4
Q ss_pred cccHHHHHHHHHHHHhh-c-CCC-CeE-EecCCCCCHHHHHHHHHHHHHH
Q psy7773 545 KLKEYQIKGLEWMVSLY-N-NNL-NGI-LADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~-~-~~~-~gI-LademGlGKTi~ai~ll~~l~~ 590 (1281)
.=|+-|+..|..++... . .+. ++| |...+|+|||.++-.++..|..
T Consensus 758 PhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 758 PCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35788888887555432 2 222 333 7999999999999988877754
No 376
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=91.78 E-value=0.46 Score=50.85 Aligned_cols=131 Identities=19% Similarity=0.174 Sum_probs=66.2
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCcEEEEeCC--HHHHHHHHhhhccCCc
Q psy7773 568 ILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSANVVAYKGS--PLARRALQGRMKNSKF 645 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~~~~~~g~--~~~r~~~~~~~~~~~~ 645 (1281)
+|+-++|.|||.++.-+++++... . .++.+|+--.--..=..+++.|+-.+.+-++... .+..
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~--~-~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~------------ 69 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK--G-KKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPA------------ 69 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT--T---EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHH------------
T ss_pred EEECCCCCchHhHHHHHHHHHhhc--c-ccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhH------------
Confidence 578899999999999998888755 3 3444444432222222334444322222222211 0000
Q ss_pred cEEEechHHHhhcccccccCceeEEEEeCCccccccchH---HHHHHHhhhccCcEEEeecCCCCCChhHHHHHHhhh
Q psy7773 646 NVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCK---LTQTLNTFYNSSHRVLLTGTPLQNKLPELWALLNFL 720 (1281)
Q Consensus 646 ~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~---~~~~l~~~~~~~~rllLTgTPl~n~~~el~~ll~fl 720 (1281)
+.+......+..-++++|+||=+.+..+.... +...+.........|.|+||--+..+..+......+
T Consensus 70 -------~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~ 140 (196)
T PF00448_consen 70 -------EIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF 140 (196)
T ss_dssp -------HHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS
T ss_pred -------HHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc
Confidence 01111112233345789999999887654432 223333322334557899987665555444444443
No 377
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=91.67 E-value=0.61 Score=47.04 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=35.7
Q ss_pred EEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccc--cccccCccc--CCEEEEeCCCC
Q psy7773 916 LRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA--GGLGLNLQA--ADTVIIFDSDW 970 (1281)
Q Consensus 916 ~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~a--gg~GlNL~~--ad~VI~~D~~w 970 (1281)
+.+.+... .+...+++.|+......-.+|+++.. .++|||+++ +..||+.-.|+
T Consensus 23 i~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 23 VFIEGKDS-GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEEECCCC-chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 34444332 35578899997633210125666655 899999997 78999988875
No 378
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=91.67 E-value=4.2 Score=53.01 Aligned_cols=54 Identities=19% Similarity=0.092 Sum_probs=39.9
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC-CCCCEEEEeCC
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKK-NLGPYLVIVPL 604 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~-~~~~~LIV~P~ 604 (1281)
.|-|-|..+|.+ .....++-...|+|||.+.+.-+.+|+...+ ....+|+|+-+
T Consensus 4 ~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT 58 (726)
T TIGR01073 4 HLNPEQREAVKT------TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFT 58 (726)
T ss_pred ccCHHHHHHHhC------CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeecc
Confidence 588999998863 2334566667999999999999999986533 23457777765
No 379
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=91.64 E-value=2.1 Score=51.14 Aligned_cols=127 Identities=17% Similarity=0.236 Sum_probs=95.3
Q ss_pred CcHHHHHHH-HHHHhh--hCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEe
Q psy7773 168 SGKFELLDR-ILPKFK--ETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLS 244 (1281)
Q Consensus 168 s~K~~~L~~-ll~~~~--~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~s 244 (1281)
..++..+.. +|..+. .....+|||..+-=-.-.|..+|+..++.|+.++--++..+-.+.-..|..+. ..++|.+
T Consensus 280 d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~--~~iLL~T 357 (442)
T PF06862_consen 280 DARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGR--KPILLYT 357 (442)
T ss_pred hHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCC--ceEEEEE
Confidence 456776654 666666 34467899987666667799999999999999999999999999999999864 5577777
Q ss_pred ccccc-cCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCC----CCeEEEEEEEec
Q psy7773 245 TRAGG-LGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQ----KNEVRVLRLITV 296 (1281)
Q Consensus 245 t~~~~-~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq----~~~V~v~~l~~~ 296 (1281)
-+.-= .=..+.++.+||+|.||-+|.-|...+.-+..-.+ ...+.|..|+++
T Consensus 358 ER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 358 ERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred hHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 55421 22346689999999999999999988876665543 234555555654
No 380
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=91.40 E-value=1.3 Score=55.72 Aligned_cols=42 Identities=19% Similarity=0.111 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEecCCCCCHHHHHHHHHHHHHHh
Q psy7773 550 QIKGLEWMVSLYNNNL--N-GILADEMGLGKTVQTIALLTYLMEK 591 (1281)
Q Consensus 550 Q~~gv~~l~~~~~~~~--~-gILademGlGKTi~ai~ll~~l~~~ 591 (1281)
|...+..+...+.++. + -|+..+.|+|||..+-.++..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 3344444444443332 2 3789999999999999998888753
No 381
>PRK05642 DNA replication initiation factor; Validated
Probab=91.38 E-value=1.3 Score=48.82 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=27.6
Q ss_pred eeEEEEeCCccccccc---hHHHHHHHhhhccCcEEEeecC
Q psy7773 667 WKCMIIDEGHRMKNHH---CKLTQTLNTFYNSSHRVLLTGT 704 (1281)
Q Consensus 667 w~~vIvDEaHr~kn~~---s~~~~~l~~~~~~~~rllLTgT 704 (1281)
.++||||+.|.+.+.. ..++..++.++....++++|+|
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 4789999999886432 3466666666556678888887
No 382
>KOG0989|consensus
Probab=91.29 E-value=0.59 Score=51.96 Aligned_cols=42 Identities=17% Similarity=0.055 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhhcC--CCCeEEecCCCCCHHHHHHHHHHHHH
Q psy7773 548 EYQIKGLEWMVSLYNN--NLNGILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 548 ~yQ~~gv~~l~~~~~~--~~~gILademGlGKTi~ai~ll~~l~ 589 (1281)
-+|...|+-+...... ..+-++..+.|+|||-++.++...|.
T Consensus 39 ~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~ 82 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALN 82 (346)
T ss_pred cchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhc
Confidence 3677777776654433 33457789999999999999998886
No 383
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.12 E-value=1.2 Score=55.58 Aligned_cols=41 Identities=22% Similarity=0.136 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEecCCCCCHHHHHHHHHHHHHH
Q psy7773 550 QIKGLEWMVSLYNNNL--NG-ILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 550 Q~~gv~~l~~~~~~~~--~g-ILademGlGKTi~ai~ll~~l~~ 590 (1281)
|...+..|......+. +. |+..+.|+|||..|..++..+..
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4455555554444332 23 78999999999999999888764
No 384
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=91.03 E-value=1 Score=58.41 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=21.2
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHh
Q psy7773 568 ILADEMGLGKTVQTIALLTYLMEK 591 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~~ 591 (1281)
||.-..|+|||..+..|...|...
T Consensus 41 Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 41 LFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred EEECCCCCCHHHHHHHHHHHhCcc
Confidence 789999999999999999888743
No 385
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=91.02 E-value=1.3 Score=57.28 Aligned_cols=129 Identities=12% Similarity=0.087 Sum_probs=75.3
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCc
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSAN 622 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~ 622 (1281)
+..|.+-|..++..++. .+.-.+|....|+|||.++-+++..+. .. ..++++++|+.....-..+- . +..
T Consensus 350 ~~~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll~~i~~~~~-~~--g~~V~~~ApTg~Aa~~L~~~---~-g~~ 419 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTMLKAAREAWE-AA--GYRVIGAALSGKAAEGLQAE---S-GIE 419 (744)
T ss_pred cCCCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHHHHHHHHHH-hC--CCeEEEEeCcHHHHHHHHhc---c-CCc
Confidence 34689999999988764 233568899999999988777655443 32 24788889987653322211 0 110
Q ss_pred EEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEEee
Q psy7773 623 VVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLT 702 (1281)
Q Consensus 623 ~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllLT 702 (1281)
...++ + .+.. +..... .....++||||||..+.... +...+........+++|.
T Consensus 420 a~Ti~-----~-~~~~----------------~~~~~~--~~~~~~llIvDEasMv~~~~--~~~Ll~~~~~~~~kliLV 473 (744)
T TIGR02768 420 SRTLA-----S-LEYA----------------WANGRD--LLSDKDVLVIDEAGMVGSRQ--MARVLKEAEEAGAKVVLV 473 (744)
T ss_pred eeeHH-----H-HHhh----------------hccCcc--cCCCCcEEEEECcccCCHHH--HHHHHHHHHhcCCEEEEE
Confidence 00000 0 0000 000011 11367899999999986543 334444333567789999
Q ss_pred cCCCC
Q psy7773 703 GTPLQ 707 (1281)
Q Consensus 703 gTPl~ 707 (1281)
|=|-|
T Consensus 474 GD~~Q 478 (744)
T TIGR02768 474 GDPEQ 478 (744)
T ss_pred CChHH
Confidence 97655
No 386
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=91.00 E-value=1.1 Score=54.93 Aligned_cols=99 Identities=18% Similarity=0.257 Sum_probs=57.3
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCcEEEEeCCHHHHHHHHhhhccCCcc
Q psy7773 567 GILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSANVVAYKGSPLARRALQGRMKNSKFN 646 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~ 646 (1281)
.+|..++|+|||..+-++...+..... ...++.+.....+..+...+.. +
T Consensus 151 l~l~G~~G~GKThL~~ai~~~~~~~~~-~~~v~yi~~~~~~~~~~~~~~~-----------~------------------ 200 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNYILEKNP-NAKVVYVTSEKFTNDFVNALRN-----------N------------------ 200 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHHHHc-----------C------------------
Confidence 578999999999999888888764321 2234444333333333333311 0
Q ss_pred EEEechHHHhhcccccccCceeEEEEeCCccccccc---hHHHHHHHhhhccCcEEEeecC
Q psy7773 647 VLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHH---CKLTQTLNTFYNSSHRVLLTGT 704 (1281)
Q Consensus 647 vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~---s~~~~~l~~~~~~~~rllLTgT 704 (1281)
+.+.+. ..+. ..++|||||.|.+.+.. ..+...+..++.....+++|++
T Consensus 201 ----~~~~~~---~~~~--~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~ 252 (450)
T PRK00149 201 ----TMEEFK---EKYR--SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSD 252 (450)
T ss_pred ----cHHHHH---HHHh--cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECC
Confidence 011111 1111 36799999999987643 2455666666555566788776
No 387
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=90.80 E-value=1.7 Score=56.87 Aligned_cols=90 Identities=12% Similarity=0.164 Sum_probs=61.9
Q ss_pred HHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCC
Q psy7773 173 LLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGL 252 (1281)
Q Consensus 173 ~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~Gl 252 (1281)
.+.+.|..+...+.+++|+..+..++..+...|....++. ...|... .+..++++|+.++.. +|+.+.+..+|+
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~---vLlG~~sFwEGV 708 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ---ILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe---EEEecchhhCCC
Confidence 4555555555666788888778888888888886655544 5556433 256799999875443 567779999999
Q ss_pred CCC--CCCEEEEeCCCCC
Q psy7773 253 NLQ--AADTVIIFDSDWN 268 (1281)
Q Consensus 253 nL~--~a~~vi~~d~~wn 268 (1281)
++. .+..||+.=+|+-
T Consensus 709 D~p~~~~~~viI~kLPF~ 726 (820)
T PRK07246 709 DFVQADRMIEVITRLPFD 726 (820)
T ss_pred CCCCCCeEEEEEecCCCC
Confidence 996 3455677766643
No 388
>PRK14974 cell division protein FtsY; Provisional
Probab=90.78 E-value=1.9 Score=50.11 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=23.7
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q psy7773 567 GILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVP 603 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P 603 (1281)
.++...+|+|||.++..++.++... + .+++++..
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~~-g--~~V~li~~ 176 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKKN-G--FSVVIAAG 176 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc-C--CeEEEecC
Confidence 4578899999999988888766532 2 35555554
No 389
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.73 E-value=1.7 Score=53.70 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhcCC-C-Ce-EEecCCCCCHHHHHHHHHHHHHH
Q psy7773 550 QIKGLEWMVSLYNNN-L-NG-ILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 550 Q~~gv~~l~~~~~~~-~-~g-ILademGlGKTi~ai~ll~~l~~ 590 (1281)
|...+..+...+..+ . +. |+..+.|+|||..|-.++..+..
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 344444444444332 2 23 78999999999999998888764
No 390
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.71 E-value=0.92 Score=56.43 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.8
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q psy7773 568 ILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~ 589 (1281)
|+..+.|+|||..|..++..+.
T Consensus 41 LF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 41 LFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred EEECCCCCCHHHHHHHHHHHhC
Confidence 8999999999999988888775
No 391
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=90.64 E-value=1.7 Score=53.42 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=20.8
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHh
Q psy7773 568 ILADEMGLGKTVQTIALLTYLMEK 591 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~~ 591 (1281)
|+..+.|+|||..+-.++..+...
T Consensus 40 Lf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 40 LFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred EEECCCCCcHHHHHHHHHHHhcCC
Confidence 789999999999999998887643
No 392
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=90.53 E-value=1.4 Score=53.24 Aligned_cols=99 Identities=15% Similarity=0.199 Sum_probs=56.4
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCcEEEEeCCHHHHHHHHhhhccCCcc
Q psy7773 567 GILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSANVVAYKGSPLARRALQGRMKNSKFN 646 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~ 646 (1281)
.+|..++|+|||..+.++...+.... ....++.+.....+..+...+.. +
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~~~-~~~~v~yi~~~~~~~~~~~~~~~-----------~------------------ 188 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILENN-PNAKVVYVSSEKFTNDFVNALRN-----------N------------------ 188 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhC-CCCcEEEEEHHHHHHHHHHHHHc-----------C------------------
Confidence 47899999999999988888876442 12344444322222222221110 0
Q ss_pred EEEechHHHhhcccccccCceeEEEEeCCccccccc---hHHHHHHHhhhccCcEEEeecC
Q psy7773 647 VLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHH---CKLTQTLNTFYNSSHRVLLTGT 704 (1281)
Q Consensus 647 vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~---s~~~~~l~~~~~~~~rllLTgT 704 (1281)
+.+.+.. .+. ..++|||||.|.+.+.. ..+...+..++.....+++|++
T Consensus 189 ----~~~~~~~---~~~--~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~ 240 (405)
T TIGR00362 189 ----KMEEFKE---KYR--SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSD 240 (405)
T ss_pred ----CHHHHHH---HHH--hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 1111111 111 25799999999987642 2355566665555667888876
No 393
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=90.42 E-value=1.1 Score=52.00 Aligned_cols=46 Identities=15% Similarity=0.209 Sum_probs=35.3
Q ss_pred cccHHHHHHHHHHHHhhcCCCCe-EEecCCCCCHHHHHHHHHHHHHHh
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNG-ILADEMGLGKTVQTIALLTYLMEK 591 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~g-ILademGlGKTi~ai~ll~~l~~~ 591 (1281)
.++|+|......++.. .+-..+ ++..+.|+|||..|..++..++..
T Consensus 3 ~~yPWl~~~~~~~~~~-~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~ 49 (328)
T PRK05707 3 EIYPWQQSLWQQLAGR-GRHPHAYLLHGPAGIGKRALAERLAAALLCE 49 (328)
T ss_pred cCCCCcHHHHHHHHHC-CCcceeeeeECCCCCCHHHHHHHHHHHHcCC
Confidence 3579999988888765 222233 578999999999999999988753
No 394
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.33 E-value=1.2 Score=54.83 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhcCCCC--e-EEecCCCCCHHHHHHHHHHHHHHh
Q psy7773 550 QIKGLEWMVSLYNNNLN--G-ILADEMGLGKTVQTIALLTYLMEK 591 (1281)
Q Consensus 550 Q~~gv~~l~~~~~~~~~--g-ILademGlGKTi~ai~ll~~l~~~ 591 (1281)
|...+..+......+.- . |+..+.|+|||..+.+++..+...
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 34445545444434432 3 889999999999999998887643
No 395
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=90.30 E-value=0.71 Score=54.89 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=20.6
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHH
Q psy7773 567 GILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~~ 590 (1281)
-|+..+.|+|||..|..+...+..
T Consensus 39 ~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 39 WLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 368999999999999999888764
No 396
>PRK06893 DNA replication initiation factor; Validated
Probab=90.29 E-value=1.8 Score=47.68 Aligned_cols=25 Identities=12% Similarity=-0.064 Sum_probs=20.6
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHh
Q psy7773 567 GILADEMGLGKTVQTIALLTYLMEK 591 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~~~ 591 (1281)
.+|..++|+|||-.+.++...+...
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~~ 66 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLLN 66 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4789999999999888888776543
No 397
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=90.21 E-value=0.34 Score=51.34 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=36.8
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHH
Q psy7773 567 GILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKW 617 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~ 617 (1281)
.+++.++|+|||..++.++..... ...+++++.......+....+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~---~g~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA---RGEPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH---CCCcEEEEECCCCHHHHHHHHHHc
Confidence 467889999999999999888763 235889998877777666665554
No 398
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=90.12 E-value=2.8 Score=53.72 Aligned_cols=84 Identities=12% Similarity=0.156 Sum_probs=67.1
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCC-CCHHHHHHHHHHhcCCCCCceEEEEecc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGT-TKSEDRGELLRKFNEPESKYFIFLLSTR 246 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~-~~~~~R~~~i~~F~~~~~~~~vll~st~ 246 (1281)
..|+.++.+-+..+.+.|..|||-|.+....+.|...|...|+++..++.. ...++-..+|..=- ..+ -+.++|.
T Consensus 422 ~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~AG--~~G--aVTIATN 497 (939)
T PRK12902 422 IAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQAG--RKG--AVTIATN 497 (939)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhcC--CCC--cEEEecc
Confidence 579999998888888899999999999999999999999999999999986 34344455666532 222 3678889
Q ss_pred ccccCCCCC
Q psy7773 247 AGGLGLNLQ 255 (1281)
Q Consensus 247 ~~~~GlnL~ 255 (1281)
.+|+|-+..
T Consensus 498 MAGRGTDIk 506 (939)
T PRK12902 498 MAGRGTDII 506 (939)
T ss_pred CCCCCcCEe
Confidence 999996644
No 399
>PHA02533 17 large terminase protein; Provisional
Probab=90.08 E-value=2.5 Score=52.30 Aligned_cols=146 Identities=15% Similarity=0.127 Sum_probs=74.1
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHH-HHHHHHH---HCC
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSN-WVLEFEK---WAP 619 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~-W~~E~~~---~~p 619 (1281)
-.|.|+|...+..|.. +.-.++.-.=..|||..+.+++.++..... ...+++++|..-... -...+.. -.|
T Consensus 58 f~L~p~Q~~i~~~~~~----~R~~ii~~aRq~GKStl~a~~al~~a~~~~-~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 58 VQMRDYQKDMLKIMHK----NRFNACNLSRQLGKTTVVAIFLLHYVCFNK-DKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred cCCcHHHHHHHHHHhc----CeEEEEEEcCcCChHHHHHHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 3689999998877632 222356666899999998876665543322 347788888432211 1122221 122
Q ss_pred CCcEEEEeCCHHHHHHHHhhhc-cCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhcc--C
Q psy7773 620 SANVVAYKGSPLARRALQGRMK-NSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNS--S 696 (1281)
Q Consensus 620 ~~~~~~~~g~~~~r~~~~~~~~-~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~--~ 696 (1281)
.+.-...... .+ ..+. .+...+.+.| ...........+++|+||+|.+++.. .++.++.....+ .
T Consensus 133 ~l~~~~i~~~--~~----~~I~l~NGS~I~~ls-----s~~~t~rG~~~~~liiDE~a~~~~~~-e~~~ai~p~lasg~~ 200 (534)
T PHA02533 133 DFLQPGIVEW--NK----GSIELENGSKIGAYA-----SSPDAVRGNSFAMIYIDECAFIPNFI-DFWLAIQPVISSGRS 200 (534)
T ss_pred HHhhcceeec--Cc----cEEEeCCCCEEEEEe-----CCCCccCCCCCceEEEeccccCCCHH-HHHHHHHHHHHcCCC
Confidence 2100000000 00 0010 1111221111 22233455677899999999998754 233333322222 2
Q ss_pred cEEEeecCCC
Q psy7773 697 HRVLLTGTPL 706 (1281)
Q Consensus 697 ~rllLTgTPl 706 (1281)
.++++..||-
T Consensus 201 ~r~iiiSTp~ 210 (534)
T PHA02533 201 SKIIITSTPN 210 (534)
T ss_pred ceEEEEECCC
Confidence 4688888884
No 400
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=90.01 E-value=1.7 Score=51.40 Aligned_cols=54 Identities=17% Similarity=0.302 Sum_probs=38.0
Q ss_pred ceeEEEEeCCcccccc---chHHHHHHHhhhccCcEEEeec--CCCCC--ChhHHHHHHhh
Q psy7773 666 QWKCMIIDEGHRMKNH---HCKLTQTLNTFYNSSHRVLLTG--TPLQN--KLPELWALLNF 719 (1281)
Q Consensus 666 ~w~~vIvDEaHr~kn~---~s~~~~~l~~~~~~~~rllLTg--TPl~n--~~~el~~ll~f 719 (1281)
..++++||-.|.+.+. ...++-.++.+......|+||+ +|-+- -..+|.+-+..
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~ 235 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEW 235 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhc
Confidence 4689999999999876 4456666777666677899999 77543 23456665543
No 401
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=90.01 E-value=2.1 Score=48.21 Aligned_cols=43 Identities=19% Similarity=0.195 Sum_probs=27.9
Q ss_pred ccHHHHHHHHHHHHhhcCCC-CeEEecCCCCCHHHHHHHHHHHH
Q psy7773 546 LKEYQIKGLEWMVSLYNNNL-NGILADEMGLGKTVQTIALLTYL 588 (1281)
Q Consensus 546 L~~yQ~~gv~~l~~~~~~~~-~gILademGlGKTi~ai~ll~~l 588 (1281)
..+.+..++..+......+. ..+|.-+.|+|||..+-.++..+
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 33455566666554444433 35789999999998877665443
No 402
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=89.93 E-value=1.9 Score=52.99 Aligned_cols=41 Identities=17% Similarity=0.041 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhcCC---CCeEEecCCCCCHHHHHHHHHHHHHH
Q psy7773 550 QIKGLEWMVSLYNNN---LNGILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 550 Q~~gv~~l~~~~~~~---~~gILademGlGKTi~ai~ll~~l~~ 590 (1281)
|...+..+...+.++ ...||..+.|+|||..|-.++..+..
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444444444433333 24689999999999999998888754
No 403
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=89.80 E-value=1.9 Score=51.06 Aligned_cols=45 Identities=24% Similarity=0.190 Sum_probs=32.3
Q ss_pred ccHHHHHHHHHHHHhhc---CCCCeEEecCCCCCHHHHHHHHHHHHHH
Q psy7773 546 LKEYQIKGLEWMVSLYN---NNLNGILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 546 L~~yQ~~gv~~l~~~~~---~~~~gILademGlGKTi~ai~ll~~l~~ 590 (1281)
=|+.|++.+...+.... .+.+.+|..+.|+|||..+-.++..+..
T Consensus 19 gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 37778877765554322 2345788999999999999888887754
No 404
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=89.80 E-value=1.7 Score=52.92 Aligned_cols=101 Identities=16% Similarity=0.100 Sum_probs=58.2
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCcEEEEeCCHHHHHHHHhhhccCCcc
Q psy7773 567 GILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSANVVAYKGSPLARRALQGRMKNSKFN 646 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~ 646 (1281)
.+|..++|+|||..+-++..++..... ...++.|.+...+......+..-.
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~~~~-~~~v~yv~~~~f~~~~~~~l~~~~---------------------------- 194 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIESNFS-DLKVSYMSGDEFARKAVDILQKTH---------------------------- 194 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEEHHHHHHHHHHHHHHhh----------------------------
Confidence 468999999999888777776654322 234555444443333333332100
Q ss_pred EEEechHHHhhcccccccCceeEEEEeCCccccccc---hHHHHHHHhhhccCcEEEeecC
Q psy7773 647 VLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHH---CKLTQTLNTFYNSSHRVLLTGT 704 (1281)
Q Consensus 647 vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~---s~~~~~l~~~~~~~~rllLTgT 704 (1281)
-.++.+. ..+ ...++|||||+|.+.+.. ..++..++.++.....++||+.
T Consensus 195 ---~~~~~~~---~~~--~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd 247 (450)
T PRK14087 195 ---KEIEQFK---NEI--CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSD 247 (450)
T ss_pred ---hHHHHHH---HHh--ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 0001110 111 146799999999997543 3456666666566667888854
No 405
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.79 E-value=1.7 Score=54.51 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEecCCCCCHHHHHHHHHHHHHH
Q psy7773 550 QIKGLEWMVSLYNNNL--NG-ILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 550 Q~~gv~~l~~~~~~~~--~g-ILademGlGKTi~ai~ll~~l~~ 590 (1281)
|...+..+...+.++. .. |+....|+|||..+..++..+..
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4455555555444433 23 78999999999999999888764
No 406
>smart00573 HSA domain in helicases and associated with SANT domains.
Probab=89.70 E-value=0.4 Score=42.19 Aligned_cols=52 Identities=40% Similarity=0.583 Sum_probs=45.2
Q ss_pred ccccchhhhhccchhhhhhhhHHHHhhhhhhhHHHhhhHHHHHHHHHHHHHh
Q psy7773 310 KLNMDEKEYHRNNTARTQKLNKAIINYHINAEKEQKKEQERIEKERMRRLMA 361 (1281)
Q Consensus 310 K~~l~~~~~~~~~~~k~~kl~k~v~~~~~~~ekEe~k~~er~ekerl~~L~~ 361 (1281)
-++.++...+....+...+++.+|..||...+.++.+..++.+++||++|++
T Consensus 22 w~~~df~e~~k~k~~~a~kla~~v~~~h~~~e~~e~r~~er~ek~Rl~~l~~ 73 (73)
T smart00573 22 WHAKDFKEEHKWKIAAAKKMAKAVMDYHQNKEKEEERREEKNEKRRLRKLAA 73 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3455667777788888999999999999999999999999999999999963
No 407
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=89.68 E-value=1.9 Score=48.68 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=27.3
Q ss_pred cccccCceeEEEEeCCccccc-cchHHHHHHHhh--hcc--CcEEEeecCC
Q psy7773 660 SVLSKIQWKCMIIDEGHRMKN-HHCKLTQTLNTF--YNS--SHRVLLTGTP 705 (1281)
Q Consensus 660 ~~l~~~~w~~vIvDEaHr~kn-~~s~~~~~l~~~--~~~--~~rllLTgTP 705 (1281)
..+..++..+|||||.|++.. ...+....++.+ ... .--+.+.||+
T Consensus 139 ~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 139 RLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 567777899999999999753 333333333222 112 2225677885
No 408
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=89.67 E-value=2 Score=50.72 Aligned_cols=43 Identities=12% Similarity=0.291 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEecCCCCCHHHHHHHHHHHHHHhc
Q psy7773 550 QIKGLEWMVSLYNNNL--N-GILADEMGLGKTVQTIALLTYLMEKK 592 (1281)
Q Consensus 550 Q~~gv~~l~~~~~~~~--~-gILademGlGKTi~ai~ll~~l~~~~ 592 (1281)
|..++..+...+..+. . -|+..+.|+|||..|..++.+++...
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 5555565655555443 2 36899999999999999999998644
No 409
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=89.61 E-value=1.7 Score=54.27 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.0
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHh
Q psy7773 568 ILADEMGLGKTVQTIALLTYLMEK 591 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~~ 591 (1281)
|+..+.|+|||..|-+++..+...
T Consensus 42 Lf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 42 IFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred EEECCCCCCHHHHHHHHHHhhccc
Confidence 789999999999999998888643
No 410
>PF13173 AAA_14: AAA domain
Probab=89.54 E-value=2.2 Score=42.13 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=25.1
Q ss_pred ceeEEEEeCCccccccchHHHHHHHhhhccCcEEEeecCC
Q psy7773 666 QWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLTGTP 705 (1281)
Q Consensus 666 ~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllLTgTP 705 (1281)
+-.+|||||+|++.+....+-..+. . .....+++||+-
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d-~-~~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVD-N-GPNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHH-h-ccCceEEEEccc
Confidence 4568999999999765433222222 1 234689999984
No 411
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=89.53 E-value=1.7 Score=43.77 Aligned_cols=46 Identities=26% Similarity=0.375 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCC--CCEEEEeCCCC
Q psy7773 220 KSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQA--ADTVIIFDSDW 267 (1281)
Q Consensus 220 ~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~--a~~vi~~d~~w 267 (1281)
...+...+++.|...... .+|+++...++|+|+.. +..||+.-+|+
T Consensus 32 ~~~~~~~~l~~f~~~~~~--~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 32 DGKETGKLLEKYVEACEN--AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred ChhHHHHHHHHHHHcCCC--EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 334578899999864321 35666666999999994 56888888776
No 412
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.52 E-value=2.2 Score=52.73 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=20.8
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHH
Q psy7773 567 GILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~~ 590 (1281)
-|+..+.|+|||..|-.++.++..
T Consensus 41 ~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 368999999999999999888763
No 413
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=89.50 E-value=3.1 Score=47.92 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=38.8
Q ss_pred CcccHHHHHHHHHHHHhhcCCC--C-eEEecCCCCCHHHHHHHHHHHHHHh
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNL--N-GILADEMGLGKTVQTIALLTYLMEK 591 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~--~-gILademGlGKTi~ai~ll~~l~~~ 591 (1281)
..++|+|......+...+.++. + -++..+.|+||+..|..++..++..
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~ 53 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLAS 53 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCC
Confidence 3689999999998887765543 2 3678999999999999999998754
No 414
>PF13892 DBINO: DNA-binding domain
Probab=89.47 E-value=1.6 Score=43.00 Aligned_cols=74 Identities=26% Similarity=0.482 Sum_probs=53.9
Q ss_pred cchhhhhhhhHHHHhhhhhhhHHHhhhHHHHHHHHHHHHHhhCHHHHHHHHhhHhHHHHHHHHHhhHHHHHHHHHHHH
Q psy7773 321 NNTARTQKLNKAIINYHINAEKEQKKEQERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDEYISNLTQMVK 398 (1281)
Q Consensus 321 ~~~~k~~kl~k~v~~~~~~~ekEe~k~~er~ekerl~~L~~~dee~y~kll~~~k~~rl~~ll~qtd~~~~~l~~~v~ 398 (1281)
+...+..++.+.++.|.-..++++.....+.+++.+...+...+. +.-.+ ..+|+++||.||+-|-+.|+....
T Consensus 61 d~~~Rakrl~rEm~~fwkk~eke~~~~~k~~eKE~~e~~k~~~E~--~e~~r--q~~rl~fLl~QTElfsHF~~~k~~ 134 (139)
T PF13892_consen 61 DTQLRAKRLMREMLSFWKKNEKEERELRKKAEKEALEQKKKEEEK--REAKR--QQRRLNFLLTQTELFSHFMQNKAK 134 (139)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH--HHHHH--HHHHHHHHHHHHHHHHHHHccccc
Confidence 445677888999999998888888777777777776666554442 11111 247999999999999998876543
No 415
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=89.44 E-value=2.3 Score=51.67 Aligned_cols=101 Identities=16% Similarity=0.252 Sum_probs=56.7
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCcEEEEeCCHHHHHHHHhhhccCCc
Q psy7773 566 NGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSANVVAYKGSPLARRALQGRMKNSKF 645 (1281)
Q Consensus 566 ~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~ 645 (1281)
+.+|..++|+|||..+-++..++...... ..++.+.....+......+.. +.
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~-~~v~yi~~~~f~~~~~~~~~~-----------~~---------------- 183 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPD-LRVMYITSEKFLNDLVDSMKE-----------GK---------------- 183 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCC-CeEEEEEHHHHHHHHHHHHhc-----------cc----------------
Confidence 35789999999999988888877643322 244544432222222111110 00
Q ss_pred cEEEechHHHhhcccccccCceeEEEEeCCccccccc---hHHHHHHHhhhccCcEEEeecC
Q psy7773 646 NVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHH---CKLTQTLNTFYNSSHRVLLTGT 704 (1281)
Q Consensus 646 ~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~---s~~~~~l~~~~~~~~rllLTgT 704 (1281)
.+.+.. .+ ...+++|||||.|.+.+.. ..+...++.++.....+++|++
T Consensus 184 ------~~~f~~---~~-~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd 235 (440)
T PRK14088 184 ------LNEFRE---KY-RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_pred ------HHHHHH---HH-HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECC
Confidence 001110 00 0146899999999986543 3455666666555667888765
No 416
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.44 E-value=2 Score=50.81 Aligned_cols=40 Identities=20% Similarity=0.130 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEecCCCCCHHHHHHHHHHHHH
Q psy7773 550 QIKGLEWMVSLYNNNL--NG-ILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 550 Q~~gv~~l~~~~~~~~--~g-ILademGlGKTi~ai~ll~~l~ 589 (1281)
|...+..+...+..+. ++ |+..+.|+|||..|-+++..+.
T Consensus 21 q~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 21 QKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 4455555554444332 34 7999999999999988887775
No 417
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=89.43 E-value=2.4 Score=46.52 Aligned_cols=27 Identities=22% Similarity=0.076 Sum_probs=21.7
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHH
Q psy7773 563 NNLNGILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 563 ~~~~gILademGlGKTi~ai~ll~~l~ 589 (1281)
.+.+.+|..+.|+|||..+.++...+.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~ 67 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS 67 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 344678999999999998888777654
No 418
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=89.43 E-value=2.1 Score=56.59 Aligned_cols=131 Identities=15% Similarity=0.081 Sum_probs=74.1
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCc
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSAN 622 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~ 622 (1281)
+..|.+-|..+|..++.. +.-.+|.-..|+|||.+.-+ +..++... ...++.++|+.....=..+- .
T Consensus 344 g~~Ls~eQr~Av~~il~s---~~v~vv~G~AGTGKTT~l~~-~~~~~e~~--G~~V~~~ApTGkAA~~L~e~---t---- 410 (988)
T PRK13889 344 GLVLSGEQADALAHVTDG---RDLGVVVGYAGTGKSAMLGV-AREAWEAA--GYEVRGAALSGIAAENLEGG---S---- 410 (988)
T ss_pred CCCCCHHHHHHHHHHhcC---CCeEEEEeCCCCCHHHHHHH-HHHHHHHc--CCeEEEecCcHHHHHHHhhc---c----
Confidence 346999999999887642 22467888899999987443 44444333 24688888876654222110 0
Q ss_pred EEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEEee
Q psy7773 623 VVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLT 702 (1281)
Q Consensus 623 ~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllLT 702 (1281)
|.. ...+..... . +..... ....-++||||||-.+.... +.+.+........+++|.
T Consensus 411 -----Gi~--a~TI~sll~--~----------~~~~~~--~l~~~~vlIVDEASMv~~~~--m~~LL~~a~~~garvVLV 467 (988)
T PRK13889 411 -----GIA--SRTIASLEH--G----------WGQGRD--LLTSRDVLVIDEAGMVGTRQ--LERVLSHAADAGAKVVLV 467 (988)
T ss_pred -----Ccc--hhhHHHHHh--h----------hccccc--ccccCcEEEEECcccCCHHH--HHHHHHhhhhCCCEEEEE
Confidence 000 000000000 0 000001 11245799999999886542 344444333567799999
Q ss_pred cCCCCCC
Q psy7773 703 GTPLQNK 709 (1281)
Q Consensus 703 gTPl~n~ 709 (1281)
|=|-|-.
T Consensus 468 GD~~QLp 474 (988)
T PRK13889 468 GDPQQLQ 474 (988)
T ss_pred CCHHHcC
Confidence 9887643
No 419
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.33 E-value=2.3 Score=55.14 Aligned_cols=94 Identities=12% Similarity=0.244 Sum_probs=61.3
Q ss_pred HHHHHHHHHhhh-CCCeEEEEeccHHHHHHHHHHHHhCCC-------cEEEecCCCCHHHHHHHHHHhcCC----CCCce
Q psy7773 172 ELLDRILPKFKE-TKHRVLMFCQMTQLMTILEDYFIWRDF-------SYLRLDGTTKSEDRGELLRKFNEP----ESKYF 239 (1281)
Q Consensus 172 ~~L~~ll~~~~~-~~~kvlIFs~~~~~~~~l~~~l~~~g~-------~~~~~~g~~~~~~R~~~i~~F~~~----~~~~~ 239 (1281)
..+...|..+.. .+..+|||..+-..++.+...+...|+ ..+.+.+... .++..+++.|... .+
T Consensus 508 ~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~-~~~~~~l~~f~~~~~~~~g--- 583 (705)
T TIGR00604 508 RNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDA-QETSDALERYKQAVSEGRG--- 583 (705)
T ss_pred HHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCc-chHHHHHHHHHHHHhcCCc---
Confidence 344444444333 456788888888888877777765432 2233444322 5789999999642 22
Q ss_pred EEEEec--cccccCCCCC--CCCEEEEeCCCC-Cc
Q psy7773 240 IFLLST--RAGGLGLNLQ--AADTVIIFDSDW-NP 269 (1281)
Q Consensus 240 vll~st--~~~~~GlnL~--~a~~vi~~d~~w-np 269 (1281)
.+|++. ...++|||+. .+..||++-+|+ ||
T Consensus 584 avL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~ 618 (705)
T TIGR00604 584 AVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYT 618 (705)
T ss_pred eEEEEecCCcccCccccCCCCCcEEEEEccCCCCC
Confidence 245554 6789999999 478899998888 54
No 420
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=89.09 E-value=3.6 Score=47.71 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=24.5
Q ss_pred ceeEEEEeCCccccccc--hHHHHHHHhhhccCcEEEeecCCCC
Q psy7773 666 QWKCMIIDEGHRMKNHH--CKLTQTLNTFYNSSHRVLLTGTPLQ 707 (1281)
Q Consensus 666 ~w~~vIvDEaHr~kn~~--s~~~~~l~~~~~~~~rllLTgTPl~ 707 (1281)
..++|||||+|++.... ..+...+.. +....++++|++...
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~-~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEA-YSKNCSFIITANNKN 142 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHh-cCCCceEEEEcCChh
Confidence 35789999999983322 222223333 245667888886543
No 421
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=89.08 E-value=2 Score=50.17 Aligned_cols=131 Identities=18% Similarity=0.154 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhhcCCC--Ce-EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCcEEE
Q psy7773 549 YQIKGLEWMVSLYNNNL--NG-ILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSANVVA 625 (1281)
Q Consensus 549 yQ~~gv~~l~~~~~~~~--~g-ILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~~~~ 625 (1281)
.|...+..+...+.++. +. |+..+.|+|||..+..++..++......+. |-..+.....-.....|++.++.
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-----~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-----PCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-----CCCcCHHHHHHhcCCCCCEEEec
Confidence 45555555555554332 34 789999999999999998888643221111 22233333333344456665554
Q ss_pred EeCCHHHHHHHHhhhccCCccEEEechHHHhhccccc----ccCceeEEEEeCCccccccc-hHHHHHHHhhhccCcEEE
Q psy7773 626 YKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVL----SKIQWKCMIIDEGHRMKNHH-CKLTQTLNTFYNSSHRVL 700 (1281)
Q Consensus 626 ~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l----~~~~w~~vIvDEaHr~kn~~-s~~~~~l~~~~~~~~rll 700 (1281)
..|.... .+.+......+ ..-.+.++||||||++.... ..+-+.+..- +..-.++
T Consensus 85 ~~~~~i~-------------------id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP-p~~~~~I 144 (329)
T PRK08058 85 PDGQSIK-------------------KDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEP-SGGTTAI 144 (329)
T ss_pred cccccCC-------------------HHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCC-CCCceEE
Confidence 4432111 11111111111 11268899999999996432 2333444331 3344566
Q ss_pred eecC
Q psy7773 701 LTGT 704 (1281)
Q Consensus 701 LTgT 704 (1281)
|+++
T Consensus 145 l~t~ 148 (329)
T PRK08058 145 LLTE 148 (329)
T ss_pred EEeC
Confidence 6655
No 422
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.06 E-value=3.7 Score=50.13 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=21.1
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHHHh
Q psy7773 566 NGILADEMGLGKTVQTIALLTYLMEK 591 (1281)
Q Consensus 566 ~gILademGlGKTi~ai~ll~~l~~~ 591 (1281)
.-|+..+.|+|||..|..++..+...
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHHHcCc
Confidence 35789999999999998887777543
No 423
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.05 E-value=2 Score=52.38 Aligned_cols=23 Identities=35% Similarity=0.271 Sum_probs=19.9
Q ss_pred eEEecCCCCCHHHHHHHHHHHHH
Q psy7773 567 GILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~ 589 (1281)
-|+..++|+|||..|-+++..+.
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 38899999999999988887765
No 424
>KOG0949|consensus
Probab=89.01 E-value=0.5 Score=59.50 Aligned_cols=79 Identities=22% Similarity=0.207 Sum_probs=61.7
Q ss_pred CCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEEeC-CCCCcchhhHHhHhhhhcCCCC
Q psy7773 208 RDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFD-SDWNPHQDLQAQDRAHRIGQKN 286 (1281)
Q Consensus 208 ~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d-~~wnp~~~~Qa~gR~~R~Gq~~ 286 (1281)
+||.+ .|.++....|..+---|+.+. .. +|++|...+.|||.++-++|+.-| +.-||-.|.|+-||++|-|=..
T Consensus 963 RGiG~--HHaglNr~yR~~VEvLFR~g~--L~-VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~ 1037 (1330)
T KOG0949|consen 963 RGIGV--HHAGLNRKYRSLVEVLFRQGH--LQ-VLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDT 1037 (1330)
T ss_pred hcccc--cccccchHHHHHHHHHhhcCc--eE-EEEEeeehhcccCCCceeEEEeccccccCchhHHhhhcccccccccc
Confidence 35543 578888899999888999754 33 588999999999999777666665 5779999999999999999654
Q ss_pred eEEEE
Q psy7773 287 EVRVL 291 (1281)
Q Consensus 287 ~V~v~ 291 (1281)
--+|.
T Consensus 1038 lGnV~ 1042 (1330)
T KOG0949|consen 1038 LGNVV 1042 (1330)
T ss_pred ccceE
Confidence 43333
No 425
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=88.94 E-value=3.9 Score=48.10 Aligned_cols=125 Identities=15% Similarity=0.071 Sum_probs=63.3
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCC--CCcEEEEeCCHHHHHHHHhhh
Q psy7773 563 NNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAP--SANVVAYKGSPLARRALQGRM 640 (1281)
Q Consensus 563 ~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p--~~~~~~~~g~~~~r~~~~~~~ 640 (1281)
.+...+|..++|.|||.++..++..+....+. .++.+|+....-..=...+..|+. ++.+......
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~-~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~----------- 203 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGA-SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDG----------- 203 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CeEEEEecccccccHHHHHHHHHHHcCCceEecCCc-----------
Confidence 34455789999999999999988876543322 345555543321111122222221 2222222211
Q ss_pred ccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhh---c-cCcEEEeecCCCCCChhHHH
Q psy7773 641 KNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFY---N-SSHRVLLTGTPLQNKLPELW 714 (1281)
Q Consensus 641 ~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~---~-~~~rllLTgTPl~n~~~el~ 714 (1281)
..+......+ .+.++|+||.+-+.-.... +...+..+. . ....|.|+||--...+.+.+
T Consensus 204 ------------~~l~~~l~~l--~~~DlVLIDTaG~~~~d~~-l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 204 ------------GDLQLALAEL--RNKHMVLIDTIGMSQRDRT-VSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred ------------ccHHHHHHHh--cCCCEEEEcCCCCCcccHH-HHHHHHHHhccCCCCeEEEEecCccChHHHHHHH
Confidence 1111111111 1458999999977643332 233333221 1 23457899997666666553
No 426
>KOG0922|consensus
Probab=88.88 E-value=1.9 Score=52.73 Aligned_cols=113 Identities=24% Similarity=0.301 Sum_probs=84.1
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHHhC----CC----cEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCC
Q psy7773 183 ETKHRVLMFCQMTQLMTILEDYFIWR----DF----SYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNL 254 (1281)
Q Consensus 183 ~~~~kvlIFs~~~~~~~~l~~~l~~~----g~----~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL 254 (1281)
++..-+|||-.....++.+.+.|... +- -+..++|+++.++..+ -|...+.+++=++++|..+...|+.
T Consensus 256 E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~r---vF~p~p~g~RKvIlsTNIAETSlTI 332 (674)
T KOG0922|consen 256 EPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSR---VFDPAPPGKRKVILSTNIAETSLTI 332 (674)
T ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhc---cccCCCCCcceEEEEcceeeeeEEe
Confidence 34457999999888888877777654 11 1467899999876554 4666565677789999999999999
Q ss_pred CCCCEEEEeCC------CCCcc-----------hhhHHhHhhhhcCCCCeEEEEEEEeccchH
Q psy7773 255 QAADTVIIFDS------DWNPH-----------QDLQAQDRAHRIGQKNEVRVLRLITVNSVE 300 (1281)
Q Consensus 255 ~~a~~vi~~d~------~wnp~-----------~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tie 300 (1281)
.+..+|| |+ .|||. .-.||.-|++|-|.+.+..+|||+++.-++
T Consensus 333 ~GI~YVV--DsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 333 DGIRYVV--DSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYD 393 (674)
T ss_pred cceEEEE--cCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHh
Confidence 8877665 33 34552 334788888888888889999999988763
No 427
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=88.60 E-value=2.6 Score=53.37 Aligned_cols=113 Identities=18% Similarity=0.315 Sum_probs=79.7
Q ss_pred cHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecccc
Q psy7773 169 GKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAG 248 (1281)
Q Consensus 169 ~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~ 248 (1281)
....++..++.. ...|++|.|||....+.+++.+.+...+..+..++|..+..+ ++.+. +++| ++-|.+.
T Consensus 267 ~~~tF~~~L~~~-L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d----v~~W~----~~~V-viYT~~i 336 (824)
T PF02399_consen 267 DETTFFSELLAR-LNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED----VESWK----KYDV-VIYTPVI 336 (824)
T ss_pred chhhHHHHHHHH-HhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc----ccccc----ceeE-EEEeceE
Confidence 344455555544 467899999999999999999999999999999998776552 23343 3556 5666788
Q ss_pred ccCCCCCC--CCEEEEe--CCCCCcch--hhHHhHhhhhcCCCCeEEEEE
Q psy7773 249 GLGLNLQA--ADTVIIF--DSDWNPHQ--DLQAQDRAHRIGQKNEVRVLR 292 (1281)
Q Consensus 249 ~~GlnL~~--a~~vi~~--d~~wnp~~--~~Qa~gR~~R~Gq~~~V~v~~ 292 (1281)
+.|+++-. -+.|+.| ....-|.. ..|.+||+=.++.. ++.||.
T Consensus 337 tvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~~-ei~v~~ 385 (824)
T PF02399_consen 337 TVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLDN-EIYVYI 385 (824)
T ss_pred EEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhccC-eEEEEE
Confidence 88999873 3455555 33344554 58999999988764 455554
No 428
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=88.58 E-value=2.2 Score=52.83 Aligned_cols=126 Identities=9% Similarity=0.148 Sum_probs=67.9
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHH----HHHHHHHHCCCCcEEEEeCCHHHHHHHHhhhc
Q psy7773 567 GILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSN----WVLEFEKWAPSANVVAYKGSPLARRALQGRMK 641 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~----W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~ 641 (1281)
.++.-+=--|||..+.++|..++... ..-.+++++|. ++... ...-+++|+|...+....|.. +.-...
T Consensus 257 tVflVPRR~GKTwivv~iI~~ll~s~-~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe~-----I~i~f~ 330 (738)
T PHA03368 257 TVFLVPRRHGKTWFLVPLIALALATF-RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGET-----ISFSFP 330 (738)
T ss_pred eEEEecccCCchhhHHHHHHHHHHhC-CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCcE-----EEEEec
Confidence 45566778999998887777665332 23478888884 33333 334456788765443334421 100011
Q ss_pred cCC-ccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhh-ccCcEEEeecC
Q psy7773 642 NSK-FNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFY-NSSHRVLLTGT 704 (1281)
Q Consensus 642 ~~~-~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~-~~~~rllLTgT 704 (1281)
.+. ..+...|- .....+....++++||||||.++... +...+=.+. .....|.+|-|
T Consensus 331 nG~kstI~FaSa----rntNsiRGqtfDLLIVDEAqFIk~~a--l~~ilp~l~~~n~k~I~ISS~ 389 (738)
T PHA03368 331 DGSRSTIVFASS----HNTNGIRGQDFNLLFVDEANFIRPDA--VQTIMGFLNQTNCKIIFVSST 389 (738)
T ss_pred CCCccEEEEEec----cCCCCccCCcccEEEEechhhCCHHH--HHHHHHHHhccCccEEEEecC
Confidence 111 12222211 22344566689999999999998633 222221111 34556677655
No 429
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=88.54 E-value=1.5 Score=44.20 Aligned_cols=45 Identities=22% Similarity=0.320 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCCCCceEEEEeccc--cccCCCCCC--CCEEEEeCCCC
Q psy7773 223 DRGELLRKFNEPESKYFIFLLSTRA--GGLGLNLQA--ADTVIIFDSDW 267 (1281)
Q Consensus 223 ~R~~~i~~F~~~~~~~~vll~st~~--~~~GlnL~~--a~~vi~~d~~w 267 (1281)
+...+++.|.........+|+++.. .++||||.. +..||+.-+|+
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 4578889998643200124444444 899999994 67888888776
No 430
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=88.50 E-value=1.1 Score=54.16 Aligned_cols=98 Identities=16% Similarity=0.144 Sum_probs=56.1
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCcEEEEeCCHHHHHHHHhhhccCCc
Q psy7773 566 NGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSANVVAYKGSPLARRALQGRMKNSKF 645 (1281)
Q Consensus 566 ~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~ 645 (1281)
+.+|..+.|+|||-.+-++...+... ..+++.+............+.. +.
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~---~~~v~yi~~~~f~~~~~~~l~~-----------~~---------------- 192 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRES---GGKILYVRSELFTEHLVSAIRS-----------GE---------------- 192 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEeeHHHHHHHHHHHHhc-----------ch----------------
Confidence 35788999999999988888887643 2355544432222222222210 00
Q ss_pred cEEEechHHHhhcccccccCceeEEEEeCCccccccc---hHHHHHHHhhhccCcEEEeecC
Q psy7773 646 NVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHH---CKLTQTLNTFYNSSHRVLLTGT 704 (1281)
Q Consensus 646 ~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~---s~~~~~l~~~~~~~~rllLTgT 704 (1281)
.+.+.. .+ ...++|||||.|.+.+.. ..++..++.++.....+++|++
T Consensus 193 ------~~~f~~---~~--~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~ 243 (445)
T PRK12422 193 ------MQRFRQ---FY--RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISST 243 (445)
T ss_pred ------HHHHHH---Hc--ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecC
Confidence 011110 01 146899999999997533 2445555555555567888885
No 431
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=88.40 E-value=2 Score=54.10 Aligned_cols=24 Identities=29% Similarity=0.248 Sum_probs=20.7
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHH
Q psy7773 567 GILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~~ 590 (1281)
-||..+.|+|||..+..++..+..
T Consensus 41 ~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 41 YLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcc
Confidence 388999999999999998887753
No 432
>PRK12377 putative replication protein; Provisional
Probab=88.34 E-value=2.3 Score=47.14 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=29.2
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHH
Q psy7773 565 LNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNW 610 (1281)
Q Consensus 565 ~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W 610 (1281)
.+.+|..++|+|||-.+.+++..+... + .+++++.-..++...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~-g--~~v~~i~~~~l~~~l 144 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK-G--RSVIVVTVPDVMSRL 144 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-C--CCeEEEEHHHHHHHH
Confidence 456889999999999999999988743 2 244444333444433
No 433
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.32 E-value=3.1 Score=52.65 Aligned_cols=41 Identities=20% Similarity=0.013 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhcCCCC---eEEecCCCCCHHHHHHHHHHHHHH
Q psy7773 550 QIKGLEWMVSLYNNNLN---GILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 550 Q~~gv~~l~~~~~~~~~---gILademGlGKTi~ai~ll~~l~~ 590 (1281)
|...+..|...+..+.. -|+..+.|+|||..|.+++..+..
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 44455555554444432 378999999999999999988864
No 434
>KOG1513|consensus
Probab=88.28 E-value=0.5 Score=57.94 Aligned_cols=66 Identities=26% Similarity=0.430 Sum_probs=50.1
Q ss_pred HHhcCCCCCceEEEEeccccccCCCCCCCC-------EE-EEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEecc
Q psy7773 229 RKFNEPESKYFIFLLSTRAGGLGLNLQAAD-------TV-IIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVN 297 (1281)
Q Consensus 229 ~~F~~~~~~~~vll~st~~~~~GlnL~~a~-------~v-i~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~ 297 (1281)
.+|-++..- |-|+| .+++-||.||.-. +| |-+++||+..+-+|-.||.||-+|-....+..||+.=
T Consensus 851 qrFM~GeK~--vAIIS-EAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseL 924 (1300)
T KOG1513|consen 851 QRFMDGEKL--VAIIS-EAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISEL 924 (1300)
T ss_pred hhhccccce--eeeee-hhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhh
Confidence 467765433 55555 8899999999543 23 4589999999999999999999998876655566543
No 435
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=88.24 E-value=2.4 Score=55.71 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=26.2
Q ss_pred HHHHHHHh--hcCCCCeEEecCCCCCHHHHHHHHHHHHH
Q psy7773 553 GLEWMVSL--YNNNLNGILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 553 gv~~l~~~--~~~~~~gILademGlGKTi~ai~ll~~l~ 589 (1281)
-+.+++.. .....|.||.-++|+|||..+=+++..+.
T Consensus 195 ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~ 233 (852)
T TIGR03345 195 EIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA 233 (852)
T ss_pred HHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHh
Confidence 35555542 23345779999999999998877776654
No 436
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=88.19 E-value=2.4 Score=54.73 Aligned_cols=111 Identities=18% Similarity=0.202 Sum_probs=80.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCE
Q psy7773 184 TKHRVLMFCQMTQLMTILEDYFIW----RDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADT 259 (1281)
Q Consensus 184 ~~~kvlIFs~~~~~~~~l~~~l~~----~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~ 259 (1281)
...-+|||-.-...+......|.. ..+.++.++|.++.++..+ -|+....+.+=+|++|..+-.+|++.+..+
T Consensus 258 ~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r---vF~p~~~~~RKVVlATNIAETSLTI~gIr~ 334 (845)
T COG1643 258 GSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVR---VFEPAPGGKRKVVLATNIAETSLTIPGIRY 334 (845)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHh---hcCCCCCCcceEEEEccccccceeeCCeEE
Confidence 346799999988888888888876 3577899999999887776 566555554446999999999999999887
Q ss_pred EEEe----CCCCCcc--------------hhhHHhHhhhhcCCCCeEEEEEEEeccchH
Q psy7773 260 VIIF----DSDWNPH--------------QDLQAQDRAHRIGQKNEVRVLRLITVNSVE 300 (1281)
Q Consensus 260 vi~~----d~~wnp~--------------~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tie 300 (1281)
||=- .+-|||. ...||-|||+| +.+=..|||++++.++
T Consensus 335 VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR---~~pGicyRLyse~~~~ 390 (845)
T COG1643 335 VIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGR---TGPGICYRLYSEEDFL 390 (845)
T ss_pred EecCCcccccccccccCceeeeEEEechhhhhhhcccccc---CCCceEEEecCHHHHH
Confidence 7621 1233332 23355555555 5567899999986665
No 437
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=88.12 E-value=5.8 Score=45.93 Aligned_cols=24 Identities=33% Similarity=0.391 Sum_probs=20.3
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHH
Q psy7773 566 NGILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 566 ~gILademGlGKTi~ai~ll~~l~ 589 (1281)
+.+|..+.|+|||..+-+++..+.
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 468999999999999888877764
No 438
>PF07529 HSA: HSA; InterPro: IPR006562 This domain of unknown function is found in helicases and other DNA-binding proteins of eukaryotes [].
Probab=87.88 E-value=0.6 Score=41.09 Aligned_cols=50 Identities=46% Similarity=0.586 Sum_probs=43.8
Q ss_pred ccchhhhhccchhhhhhhhHHHHhhhhhhhHHHhhhHHHHHHHHHHHHHh
Q psy7773 312 NMDEKEYHRNNTARTQKLNKAIINYHINAEKEQKKEQERIEKERMRRLMA 361 (1281)
Q Consensus 312 ~l~~~~~~~~~~~k~~kl~k~v~~~~~~~ekEe~k~~er~ekerl~~L~~ 361 (1281)
..++..++........++++++..||...++++.+..++.+++||++|++
T Consensus 24 a~df~~e~k~k~~~a~k~a~~v~~~~~~~~~~~~k~~er~~k~Rlr~L~~ 73 (73)
T PF07529_consen 24 AKDFKEERKWKRARAKKLAKAVAQYHKNREKEEQKRIEREEKQRLRALKS 73 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhC
Confidence 44566777777888899999999999999999999999999999999974
No 439
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=87.79 E-value=2.8 Score=50.44 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=20.7
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHHH
Q psy7773 566 NGILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 566 ~gILademGlGKTi~ai~ll~~l~~ 590 (1281)
..+++..+|+|||.++..++.++..
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~ 121 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKK 121 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4567889999999999988887753
No 440
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=87.72 E-value=3.6 Score=53.09 Aligned_cols=65 Identities=15% Similarity=0.134 Sum_probs=43.6
Q ss_pred ccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC-CCCCEEEEeCCcc-HHHHHHHHHH
Q psy7773 546 LKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKK-NLGPYLVIVPLST-LSNWVLEFEK 616 (1281)
Q Consensus 546 L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~-~~~~~LIV~P~s~-l~~W~~E~~~ 616 (1281)
|-|-|..+|.+ ...+.++-...|+|||.+.+.-+.+++...+ ....+|+|+.+.- .......+.+
T Consensus 2 Ln~~Q~~av~~------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~ 68 (664)
T TIGR01074 2 LNPQQQEAVEY------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAK 68 (664)
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 67889988754 2345566677999999999999999986433 3445777765433 2444444443
No 441
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=87.60 E-value=4 Score=50.81 Aligned_cols=40 Identities=20% Similarity=0.091 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhcCCC--C-eEEecCCCCCHHHHHHHHHHHHHH
Q psy7773 551 IKGLEWMVSLYNNNL--N-GILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 551 ~~gv~~l~~~~~~~~--~-gILademGlGKTi~ai~ll~~l~~ 590 (1281)
...+..+...+.++. . -|+..+.|+|||..|..++..+..
T Consensus 22 e~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 22 ELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 334444444443332 2 368999999999999999888864
No 442
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.55 E-value=3.1 Score=49.95 Aligned_cols=41 Identities=15% Similarity=0.017 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEecCCCCCHHHHHHHHHHHHHH
Q psy7773 550 QIKGLEWMVSLYNNNL--N-GILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 550 Q~~gv~~l~~~~~~~~--~-gILademGlGKTi~ai~ll~~l~~ 590 (1281)
|...+..+.....++. + -|+..+.|+|||..|..++..+..
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3344444444444432 2 468999999999999999888864
No 443
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=87.50 E-value=1.8 Score=50.35 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=21.9
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHh
Q psy7773 567 GILADEMGLGKTVQTIALLTYLMEK 591 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~~~ 591 (1281)
-+++.+.|+|||..|.++...+...
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~ 51 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCE 51 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCC
Confidence 5789999999999999999988743
No 444
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=87.45 E-value=3.4 Score=47.76 Aligned_cols=47 Identities=19% Similarity=0.328 Sum_probs=36.8
Q ss_pred ccHHHHHHHHHHHHhhcCCC--Ce-EEecCCCCCHHHHHHHHHHHHHHhc
Q psy7773 546 LKEYQIKGLEWMVSLYNNNL--NG-ILADEMGLGKTVQTIALLTYLMEKK 592 (1281)
Q Consensus 546 L~~yQ~~gv~~l~~~~~~~~--~g-ILademGlGKTi~ai~ll~~l~~~~ 592 (1281)
++|+|...-..+...+.++. .+ ++..+.|+||+..|..++.+++...
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 57888888877777776544 34 5789999999999999999987543
No 445
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=87.39 E-value=2.6 Score=52.42 Aligned_cols=99 Identities=15% Similarity=0.191 Sum_probs=58.0
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCcEEEEeCCHHHHHHHHhhhccCCcc
Q psy7773 567 GILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSANVVAYKGSPLARRALQGRMKNSKFN 646 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~ 646 (1281)
.+|....|+|||..+.++..++.... ....++.+.-..++..+...+.. +.
T Consensus 317 L~LyG~sGsGKTHLL~AIa~~a~~~~-~g~~V~Yitaeef~~el~~al~~-----------~~----------------- 367 (617)
T PRK14086 317 LFIYGESGLGKTHLLHAIGHYARRLY-PGTRVRYVSSEEFTNEFINSIRD-----------GK----------------- 367 (617)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeHHHHHHHHHHHHHh-----------cc-----------------
Confidence 57889999999999888887775322 12244444433333333333211 00
Q ss_pred EEEechHHHhhcccccccCceeEEEEeCCccccccc---hHHHHHHHhhhccCcEEEeecC
Q psy7773 647 VLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHH---CKLTQTLNTFYNSSHRVLLTGT 704 (1281)
Q Consensus 647 vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~---s~~~~~l~~~~~~~~rllLTgT 704 (1281)
++.+.. .+. ..++||||+.|.+.+.. ..++..++.++.....+++|+.
T Consensus 368 -----~~~f~~---~y~--~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd 418 (617)
T PRK14086 368 -----GDSFRR---RYR--EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSD 418 (617)
T ss_pred -----HHHHHH---Hhh--cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecC
Confidence 011110 111 35899999999997643 3466777776665666777775
No 446
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=87.32 E-value=2.8 Score=48.85 Aligned_cols=47 Identities=21% Similarity=0.291 Sum_probs=37.9
Q ss_pred cccHHHHHHHHHHHHhhcCCCC--e-EEecCCCCCHHHHHHHHHHHHHHh
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLN--G-ILADEMGLGKTVQTIALLTYLMEK 591 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~--g-ILademGlGKTi~ai~ll~~l~~~ 591 (1281)
.++|+|...-..+...+..+.- + +++.+.|+||+..|.+++.+++..
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~ 51 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQ 51 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 3678888888888877765442 3 579999999999999999998754
No 447
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=87.22 E-value=0.69 Score=57.75 Aligned_cols=167 Identities=13% Similarity=0.146 Sum_probs=95.7
Q ss_pred ccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHH-HHHH--
Q psy7773 542 VNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLE-FEKW-- 617 (1281)
Q Consensus 542 ~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E-~~~~-- 617 (1281)
......|||.+...-|.... -....+.-..-+|||.+.+.++.+.+.. ..+|+|+|.|+.-. ..|..+ |...
T Consensus 13 w~~~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~--~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 13 WRTDRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSIDQ--DPGPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCCCCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEEe--CCCCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 45688999999777655321 2345677788999999988888887644 44799999998655 556533 3222
Q ss_pred -CCCCcEEEEeCC-HHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCcccc----ccchHHHHHHHh
Q psy7773 618 -APSANVVAYKGS-PLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMK----NHHCKLTQTLNT 691 (1281)
Q Consensus 618 -~p~~~~~~~~g~-~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~k----n~~s~~~~~l~~ 691 (1281)
.|.+.-.+.... ......+. ...+..-.+.++... ....|......+|++||..++- +.......+..+
T Consensus 89 ~sp~l~~~~~~~~~~~~~~t~~-~k~f~gg~l~~~ga~----S~~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R 163 (557)
T PF05876_consen 89 ASPVLRRKLSPSKSRDSGNTIL-YKRFPGGFLYLVGAN----SPSNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKR 163 (557)
T ss_pred hCHHHHHHhCchhhcccCCchh-heecCCCEEEEEeCC----CCcccccCCcCEEEEechhhccccCccCCCHHHHHHHH
Confidence 222221111100 00000000 011112224443332 2356777788999999999983 223333333222
Q ss_pred --hhccCcEEEeecCCCCCChhHHHHHH
Q psy7773 692 --FYNSSHRVLLTGTPLQNKLPELWALL 717 (1281)
Q Consensus 692 --~~~~~~rllLTgTPl~n~~~el~~ll 717 (1281)
-|.....+++..||.......++.+.
T Consensus 164 ~~tf~~~~K~~~~STPt~~~~~~I~~~~ 191 (557)
T PF05876_consen 164 TKTFGSNRKILRISTPTIEGTSRIERLY 191 (557)
T ss_pred HhhhccCcEEEEeCCCCCCCCCHHHHHH
Confidence 23567789999999876555555444
No 448
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.18 E-value=4.8 Score=49.44 Aligned_cols=40 Identities=23% Similarity=0.133 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhcCCC--Ce-EEecCCCCCHHHHHHHHHHHHH
Q psy7773 550 QIKGLEWMVSLYNNNL--NG-ILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 550 Q~~gv~~l~~~~~~~~--~g-ILademGlGKTi~ai~ll~~l~ 589 (1281)
|...+..+.....++. ++ +++.+.|+|||..|-.++..+.
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4455555555444432 33 6799999999999988877765
No 449
>PRK04195 replication factor C large subunit; Provisional
Probab=87.06 E-value=5.3 Score=49.33 Aligned_cols=25 Identities=28% Similarity=0.204 Sum_probs=20.0
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHH
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYL 588 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l 588 (1281)
....+|..+.|+|||..+-+++..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3457899999999998887776554
No 450
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=86.85 E-value=5.3 Score=50.05 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=19.6
Q ss_pred EEecCCCCCHHHHHHHHHHHHHH
Q psy7773 568 ILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~ 590 (1281)
|++.+.|+|||..|-.+...+..
T Consensus 42 Lf~Gp~GtGKTt~Ak~lAkal~c 64 (559)
T PRK05563 42 LFSGPRGTGKTSAAKIFAKAVNC 64 (559)
T ss_pred EEECCCCCCHHHHHHHHHHHhcC
Confidence 66999999999999888877753
No 451
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=86.70 E-value=6.7 Score=47.02 Aligned_cols=45 Identities=27% Similarity=0.296 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHHHhh---cCCCCeEEecCCCCCHHHHHHHHHHHHHHh
Q psy7773 547 KEYQIKGLEWMVSLY---NNNLNGILADEMGLGKTVQTIALLTYLMEK 591 (1281)
Q Consensus 547 ~~yQ~~gv~~l~~~~---~~~~~gILademGlGKTi~ai~ll~~l~~~ 591 (1281)
|+-|+.-+.-.+... ..+.+.++..+.|+|||..+-.++..+...
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~ 82 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEI 82 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 455555544333222 233467899999999999998888777543
No 452
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=86.64 E-value=0.99 Score=52.08 Aligned_cols=56 Identities=18% Similarity=0.156 Sum_probs=40.8
Q ss_pred ccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhc-CCCCCEEEEeCCccH
Q psy7773 546 LKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKK-KNLGPYLVIVPLSTL 607 (1281)
Q Consensus 546 L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~-~~~~~~LIV~P~s~l 607 (1281)
|.+-|..+|.+ . ..+.++-...|+|||.+.+.-+.+++... .....+|+|+++...
T Consensus 1 l~~eQ~~~i~~-~-----~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~a 57 (315)
T PF00580_consen 1 LTDEQRRIIRS-T-----EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAA 57 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHH
T ss_pred CCHHHHHHHhC-C-----CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHH
Confidence 45778888876 2 33455556699999999999999998766 345679999998764
No 453
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=86.63 E-value=3.7 Score=53.41 Aligned_cols=28 Identities=32% Similarity=0.379 Sum_probs=22.8
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHHH
Q psy7773 563 NNLNGILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 563 ~~~~gILademGlGKTi~ai~ll~~l~~ 590 (1281)
...|.||.-++|+|||..+-+++..+..
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~ 229 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAE 229 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3457899999999999998888777653
No 454
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.55 E-value=3.5 Score=51.99 Aligned_cols=41 Identities=15% Similarity=0.032 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhcCCC--C-eEEecCCCCCHHHHHHHHHHHHHH
Q psy7773 550 QIKGLEWMVSLYNNNL--N-GILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 550 Q~~gv~~l~~~~~~~~--~-gILademGlGKTi~ai~ll~~l~~ 590 (1281)
|...+..+.....++. + -|+..+.|+|||..|..+...+..
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5555666665554432 2 368999999999999999888764
No 455
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=86.53 E-value=0.71 Score=45.48 Aligned_cols=34 Identities=32% Similarity=0.369 Sum_probs=23.9
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH
Q psy7773 568 ILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL 607 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l 607 (1281)
+|.-++|+|||..+-.++.++ ..+++.+....+.
T Consensus 2 ll~G~~G~GKT~l~~~la~~l------~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL------GFPFIEIDGSELI 35 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT------TSEEEEEETTHHH
T ss_pred EEECcCCCCeeHHHHHHHhhc------ccccccccccccc
Confidence 577889999999887777665 1355556555554
No 456
>PTZ00293 thymidine kinase; Provisional
Probab=86.48 E-value=4.6 Score=43.39 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=24.9
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc
Q psy7773 568 ILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS 605 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s 605 (1281)
++..+||+|||...|-.+..... ...+++++-|..
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~~---ag~kv~~~kp~~ 42 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFTY---SEKKCVVIKYSK 42 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHHH---cCCceEEEEecc
Confidence 56889999999777665554432 335889998864
No 457
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=86.47 E-value=5.1 Score=43.78 Aligned_cols=46 Identities=33% Similarity=0.353 Sum_probs=29.5
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH------HHHHHHHHH
Q psy7773 567 GILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL------SNWVLEFEK 616 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l------~~W~~E~~~ 616 (1281)
+.+..++|+|||+..=+++..+ .....++|+.|+.++ .-|..++..
T Consensus 54 ~~vtGevGsGKTv~~Ral~~s~----~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~ 105 (269)
T COG3267 54 LAVTGEVGSGKTVLRRALLASL----NEDQVAVVVIDKPTLSDATLLEAIVADLES 105 (269)
T ss_pred EEEEecCCCchhHHHHHHHHhc----CCCceEEEEecCcchhHHHHHHHHHHHhcc
Confidence 4567899999999887444443 233455678886655 346666543
No 458
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=86.47 E-value=11 Score=46.22 Aligned_cols=38 Identities=16% Similarity=0.103 Sum_probs=24.6
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIV 602 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~ 602 (1281)
+...+|...+|.|||..+..|+..+...+.. +.+.+|.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~g-kkVaLId 387 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAP-RDVALVT 387 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCC-CceEEEe
Confidence 3344567889999999988888776543322 3444443
No 459
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=86.38 E-value=4 Score=47.04 Aligned_cols=48 Identities=10% Similarity=0.006 Sum_probs=37.7
Q ss_pred cccHHHHHHHHHHHHhhcCCCC---eEEecCCCCCHHHHHHHHHHHHHHhc
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLN---GILADEMGLGKTVQTIALLTYLMEKK 592 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~---gILademGlGKTi~ai~ll~~l~~~~ 592 (1281)
.++|+|...-..+...+.++.- -++..+.|+||+..|..++.+++...
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~ 53 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN 53 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 4778888888888777654442 36789999999999999999887543
No 460
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.28 E-value=2.3 Score=53.63 Aligned_cols=40 Identities=15% Similarity=0.126 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhcCCCCe---EEecCCCCCHHHHHHHHHHHHH
Q psy7773 550 QIKGLEWMVSLYNNNLNG---ILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 550 Q~~gv~~l~~~~~~~~~g---ILademGlGKTi~ai~ll~~l~ 589 (1281)
|...+.+|...+.++.-+ |+..+.|+|||..+..++..+.
T Consensus 21 q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 21 QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 555566665555444332 7899999999999999988875
No 461
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=86.26 E-value=4.3 Score=47.95 Aligned_cols=102 Identities=14% Similarity=0.130 Sum_probs=57.5
Q ss_pred HHHHHHHH-hhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCcEEEEeCCH
Q psy7773 552 KGLEWMVS-LYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSANVVAYKGSP 630 (1281)
Q Consensus 552 ~gv~~l~~-~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~~~~~~g~~ 630 (1281)
.++..++. -+..+.-.+|+-++|.|||..++.++..+... .+++|.|.-.....+......++.-..
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~EEs~~qi~~Ra~rlg~~~--------- 136 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGEESPEQIKLRADRLGIST--------- 136 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECCcCHHHHHHHHHHcCCCc---------
Confidence 55566553 11222234788999999999998888776532 257888876555555544444332110
Q ss_pred HHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCcccc
Q psy7773 631 LARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMK 679 (1281)
Q Consensus 631 ~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~k 679 (1281)
-++.+.....+..-...+...+.++||||+.+.+.
T Consensus 137 --------------~~l~l~~e~~le~I~~~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 137 --------------ENLYLLAETNLEDILASIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred --------------ccEEEEccCcHHHHHHHHHhcCCcEEEEcchHHhh
Confidence 01112111111111223344578999999998874
No 462
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=86.23 E-value=3.3 Score=42.16 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=26.4
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcc
Q psy7773 568 ILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLST 606 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~ 606 (1281)
++.-++|+|||..+..++..+.. ..++++++.....
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e~~ 38 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIEEE 38 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECCcc
Confidence 56778999999999988887753 3356776666433
No 463
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=86.18 E-value=0.42 Score=50.18 Aligned_cols=38 Identities=16% Similarity=0.454 Sum_probs=26.4
Q ss_pred CCccEEEechHHHhhccc--ccc--cCceeEEEEeCCccccc
Q psy7773 643 SKFNVLLTTYEFIIKDKS--VLS--KIQWKCMIIDEGHRMKN 680 (1281)
Q Consensus 643 ~~~~vvItTye~l~~~~~--~l~--~~~w~~vIvDEaHr~kn 680 (1281)
...+|||++|.+|..... .+. ...-.+|||||||++-+
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 457899999999987532 121 23457899999999854
No 464
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.11 E-value=5.3 Score=49.68 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.1
Q ss_pred EEecCCCCCHHHHHHHHHHHHHH
Q psy7773 568 ILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~ 590 (1281)
|+..+.|+|||..|-.++..+..
T Consensus 42 Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 42 LFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred EEECCCCCCHHHHHHHHHHHhcC
Confidence 78999999999999988887753
No 465
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=86.04 E-value=1.9 Score=54.91 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=92.0
Q ss_pred cCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecc
Q psy7773 167 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 246 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~ 246 (1281)
...|+.++..-+......|..|||-+.+....+.+...|...||++..++..-. .++.-+-.+.-..+ .+-++|.
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~AG~~g---aVTiATN 485 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQAGQPG---AVTIATN 485 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhcCCCC---ccccccc
Confidence 357899999999988999999999999999999999999999999999988776 34444444432122 3578889
Q ss_pred ccccCCCCC-CCC----------EEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEE
Q psy7773 247 AGGLGLNLQ-AAD----------TVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLI 294 (1281)
Q Consensus 247 ~~~~GlnL~-~a~----------~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~ 294 (1281)
.+|.|-++. ..+ +||--+.+=+--.+.|--||++|.|-. ....|++.
T Consensus 486 MAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDp-G~S~F~lS 543 (822)
T COG0653 486 MAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDP-GSSRFYLS 543 (822)
T ss_pred cccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCc-chhhhhhh
Confidence 999999988 444 455556665556666999999999942 24445443
No 466
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=85.61 E-value=5.3 Score=50.23 Aligned_cols=42 Identities=19% Similarity=0.152 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhcCCC---CeEEecCCCCCHHHHHHHHHHHHHHh
Q psy7773 550 QIKGLEWMVSLYNNNL---NGILADEMGLGKTVQTIALLTYLMEK 591 (1281)
Q Consensus 550 Q~~gv~~l~~~~~~~~---~gILademGlGKTi~ai~ll~~l~~~ 591 (1281)
|...+..+...+..+. .-||..+.|+|||..|..++..+...
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 3444444444443332 35789999999999999999888643
No 467
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=85.54 E-value=16 Score=39.88 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=28.4
Q ss_pred ceeEEEEeCCccccccc---hHHHHHHHhhhccCcEEEeec
Q psy7773 666 QWKCMIIDEGHRMKNHH---CKLTQTLNTFYNSSHRVLLTG 703 (1281)
Q Consensus 666 ~w~~vIvDEaHr~kn~~---s~~~~~l~~~~~~~~rllLTg 703 (1281)
..++||||..|.+.+.. ..++..++.+......+++|+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 57899999999998754 345566666656677788877
No 468
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=85.34 E-value=1.9 Score=52.53 Aligned_cols=111 Identities=14% Similarity=0.225 Sum_probs=61.2
Q ss_pred hcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcc-----HHHHHHHHHHHCCCCcEEEEeCCHHHHHH
Q psy7773 561 YNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLST-----LSNWVLEFEKWAPSANVVAYKGSPLARRA 635 (1281)
Q Consensus 561 ~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~-----l~~W~~E~~~~~p~~~~~~~~g~~~~r~~ 635 (1281)
+.++-.+.|. +=--|||...+.+|+.++..-.+ =.+..|+--.- .......+.+|+|.-.++.-.|..
T Consensus 200 FKQkaTVFLV-PRRHGKTWf~VpiIsllL~s~~g-I~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~t----- 272 (668)
T PHA03372 200 FKQKATVFLV-PRRHGKTWFIIPIISFLLKNIIG-ISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNV----- 272 (668)
T ss_pred hhccceEEEe-cccCCceehHHHHHHHHHHhhcC-ceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcE-----
Confidence 3344444443 56789999999999888853322 25566665322 233445568999876653332210
Q ss_pred HHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccc
Q psy7773 636 LQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHH 682 (1281)
Q Consensus 636 ~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~ 682 (1281)
+.-.....+..++.+| ......++...|++++|||||-++...
T Consensus 273 I~~s~pg~Kst~~fas----c~n~NsiRGQ~fnll~VDEA~FI~~~a 315 (668)
T PHA03372 273 ISIDHRGAKSTALFAS----CYNTNSIRGQNFHLLLVDEAHFIKKDA 315 (668)
T ss_pred EEEecCCCcceeeehh----hccCccccCCCCCEEEEehhhccCHHH
Confidence 0000001111111111 122345666689999999999998644
No 469
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=85.34 E-value=10 Score=45.16 Aligned_cols=125 Identities=14% Similarity=0.103 Sum_probs=64.5
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe-CC-ccHHHHHHHHHHHCC--CCcEEEEeCCHHHHHHHHhhhcc
Q psy7773 567 GILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIV-PL-STLSNWVLEFEKWAP--SANVVAYKGSPLARRALQGRMKN 642 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~-P~-s~l~~W~~E~~~~~p--~~~~~~~~g~~~~r~~~~~~~~~ 642 (1281)
.++.-++|+|||.++..++..+....+ ..++++. .. .....| .+..|+. ++.+...
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~~~G--~~V~Lit~Dt~R~aA~e--QLk~yAe~lgvp~~~~---------------- 285 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFLHMG--KSVSLYTTDNYRIAAIE--QLKRYADTMGMPFYPV---------------- 285 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcC--CeEEEecccchhhhHHH--HHHHHHHhcCCCeeeh----------------
Confidence 357789999999999988876532322 2333333 22 222444 2333321 1211110
Q ss_pred CCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhh-------ccCcEEEeecCCCCCChhHHHH
Q psy7773 643 SKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFY-------NSSHRVLLTGTPLQNKLPELWA 715 (1281)
Q Consensus 643 ~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~-------~~~~rllLTgTPl~n~~~el~~ 715 (1281)
..+..-...+....+++||||=+-+.-..... ...+..+. +....|.|+||--+..+.+...
T Consensus 286 ----------~~~~~l~~~l~~~~~D~VLIDTaGr~~rd~~~-l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~ 354 (432)
T PRK12724 286 ----------KDIKKFKETLARDGSELILIDTAGYSHRNLEQ-LERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLK 354 (432)
T ss_pred ----------HHHHHHHHHHHhCCCCEEEEeCCCCCccCHHH-HHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHH
Confidence 00111112222346789999987766433322 22222222 1234578999977767777666
Q ss_pred HHhhhcC
Q psy7773 716 LLNFLLP 722 (1281)
Q Consensus 716 ll~fl~p 722 (1281)
....+.+
T Consensus 355 ~f~~~~~ 361 (432)
T PRK12724 355 AYESLNY 361 (432)
T ss_pred HhcCCCC
Confidence 6655544
No 470
>KOG0950|consensus
Probab=85.22 E-value=1.3 Score=56.08 Aligned_cols=71 Identities=25% Similarity=0.277 Sum_probs=52.5
Q ss_pred cEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEEe---CCCC-CcchhhHHhHhhhhcCC
Q psy7773 211 SYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIF---DSDW-NPHQDLQAQDRAHRIGQ 284 (1281)
Q Consensus 211 ~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~---d~~w-np~~~~Qa~gR~~R~Gq 284 (1281)
.++..|.+.+.++|.-+-..|+++. ++ ++++|...+.|+||.+-.++|=. -.+. .-..|.|.+||++|.|-
T Consensus 524 GvAyHhaGLT~eER~~iE~afr~g~--i~-vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gi 598 (1008)
T KOG0950|consen 524 GVAYHHAGLTSEEREIIEAAFREGN--IF-VLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGI 598 (1008)
T ss_pred cceecccccccchHHHHHHHHHhcC--eE-EEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhccc
Confidence 3667788888899999988999854 33 56777779999999866555432 2222 34678899999999985
No 471
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.01 E-value=4.7 Score=50.76 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=20.8
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHh
Q psy7773 568 ILADEMGLGKTVQTIALLTYLMEK 591 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~~ 591 (1281)
|+..+.|+|||..+..++.++...
T Consensus 42 Lf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 42 LFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred EEECCCCCCHHHHHHHHHHhhcCC
Confidence 789999999999999998887643
No 472
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.80 E-value=3.8 Score=51.21 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=20.7
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHH
Q psy7773 567 GILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~~ 590 (1281)
-|+..+.|+|||..|..|+..+..
T Consensus 41 ~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 41 YLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred EEEECCCCCCHHHHHHHHHHhccc
Confidence 357999999999999999888764
No 473
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=84.60 E-value=4.1 Score=51.82 Aligned_cols=23 Identities=22% Similarity=0.212 Sum_probs=20.4
Q ss_pred EEecCCCCCHHHHHHHHHHHHHH
Q psy7773 568 ILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~ 590 (1281)
|+..+.|+|||..|-.++..+..
T Consensus 44 LF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 44 LFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred EEECCCCCcHHHHHHHHHHHhcc
Confidence 78999999999999998888764
No 474
>PRK04132 replication factor C small subunit; Provisional
Probab=83.80 E-value=4.6 Score=52.44 Aligned_cols=49 Identities=16% Similarity=0.325 Sum_probs=30.8
Q ss_pred ceeEEEEeCCccccccc-hHHHHHHHhhhccCcEEEeecCCCCCChhHHHH
Q psy7773 666 QWKCMIIDEGHRMKNHH-CKLTQTLNTFYNSSHRVLLTGTPLQNKLPELWA 715 (1281)
Q Consensus 666 ~w~~vIvDEaHr~kn~~-s~~~~~l~~~~~~~~rllLTgTPl~n~~~el~~ 715 (1281)
++.+|||||||+|.... ..+.+.+.. +....+++|+.++...-+.-+.|
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEe-p~~~~~FILi~N~~~kIi~tIrS 679 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEM-FSSNVRFILSCNYSSKIIEPIQS 679 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhC-CCCCeEEEEEeCChhhCchHHhh
Confidence 47899999999996432 223333332 24566788888876554444443
No 475
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=83.73 E-value=4.1 Score=48.22 Aligned_cols=39 Identities=26% Similarity=0.226 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHH
Q psy7773 549 YQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTY 587 (1281)
Q Consensus 549 yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~ 587 (1281)
.++..+..++....++.|.|+-.+.|+|||-.+.++..+
T Consensus 194 ~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~ 232 (449)
T TIGR02688 194 QKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPY 232 (449)
T ss_pred HHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHH
Confidence 344445555555678899999999999999888887666
No 476
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=83.55 E-value=7 Score=47.49 Aligned_cols=174 Identities=13% Similarity=0.089 Sum_probs=92.3
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCe------EEecCCCCCHHHHHHHHHHHHHH-hcCCCCCEEEEeCCccH-HHHHHHH
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNG------ILADEMGLGKTVQTIALLTYLME-KKKNLGPYLVIVPLSTL-SNWVLEF 614 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~g------ILademGlGKTi~ai~ll~~l~~-~~~~~~~~LIV~P~s~l-~~W~~E~ 614 (1281)
...|-|||.-.+.-+...+.++.+. ++--+=|=|||..+.+++.+..- .......++|++|+--. .+--..+
T Consensus 59 p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~a 138 (546)
T COG4626 59 PESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPA 138 (546)
T ss_pred ccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHH
Confidence 3479999999998888777776653 67778899999887666655432 22333467888885433 2222222
Q ss_pred HHHCCCCcEEEEeCCHHHHHHHHhhhccCCccEEEe------chHHHhhcccccccCceeEEEEeCCccccccchHHHHH
Q psy7773 615 EKWAPSANVVAYKGSPLARRALQGRMKNSKFNVLLT------TYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQT 688 (1281)
Q Consensus 615 ~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvIt------Tye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~ 688 (1281)
..-.-... ..+.. .......+.|+ .-..+..+.......+..++|+||-|-.++.. ..+..
T Consensus 139 r~mv~~~~--------~l~~~----~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~-~~~~~ 205 (546)
T COG4626 139 RDMVKRDD--------DLRDL----CNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE-DMYSE 205 (546)
T ss_pred HHHHHhCc--------chhhh----hccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH-HHHHH
Confidence 11110000 00000 00111111111 11123345666777889999999999999875 33333
Q ss_pred HHhhh---ccCcEEEee--cCCCCCChhHHHHHHhhhcCCCCCChh
Q psy7773 689 LNTFY---NSSHRVLLT--GTPLQNKLPELWALLNFLLPSIFKSCS 729 (1281)
Q Consensus 689 l~~~~---~~~~rllLT--gTPl~n~~~el~~ll~fl~p~~~~~~~ 729 (1281)
+..-. +....+..| |-|...-..+......-++.+...+..
T Consensus 206 ~~~g~~ar~~~l~~~ITT~g~~~~g~~~q~~~y~k~vl~g~~~d~~ 251 (546)
T COG4626 206 AKGGLGARPEGLVVYITTSGDPPAGVFKQKLQYAKDVLDGKIKDPH 251 (546)
T ss_pred HHhhhccCcCceEEEEecCCCCCccHHHHHHHHHHHHhcCCcCCcc
Confidence 33221 122233333 344444455555554444444444433
No 477
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=83.25 E-value=3.9 Score=47.45 Aligned_cols=21 Identities=29% Similarity=0.200 Sum_probs=16.8
Q ss_pred CeEEecCCCCCHHHHHHHHHH
Q psy7773 566 NGILADEMGLGKTVQTIALLT 586 (1281)
Q Consensus 566 ~gILademGlGKTi~ai~ll~ 586 (1281)
+.||..++|+|||-.|-.+..
T Consensus 50 SmIl~GPPG~GKTTlA~liA~ 70 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAG 70 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHH
Confidence 569999999999987755443
No 478
>PRK13342 recombination factor protein RarA; Reviewed
Probab=83.07 E-value=5 Score=48.43 Aligned_cols=22 Identities=27% Similarity=0.164 Sum_probs=17.9
Q ss_pred CeEEecCCCCCHHHHHHHHHHH
Q psy7773 566 NGILADEMGLGKTVQTIALLTY 587 (1281)
Q Consensus 566 ~gILademGlGKTi~ai~ll~~ 587 (1281)
+.||..+.|+|||..+-.+...
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5688999999999888776544
No 479
>KOG0921|consensus
Probab=82.81 E-value=8.1 Score=48.83 Aligned_cols=140 Identities=17% Similarity=0.127 Sum_probs=74.0
Q ss_pred HhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCC-CEEEEe-CCccHHHHHHH-HH--HHCCCCcEEEEeCCHHHH
Q psy7773 559 SLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLG-PYLVIV-PLSTLSNWVLE-FE--KWAPSANVVAYKGSPLAR 633 (1281)
Q Consensus 559 ~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~-~~LIV~-P~s~l~~W~~E-~~--~~~p~~~~~~~~g~~~~r 633 (1281)
.....+.-.|+--++|+|||.|...+|..-+....... .-.+|| |.....+...| +. +..--...++|.-.
T Consensus 388 q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vR---- 463 (1282)
T KOG0921|consen 388 QAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVR---- 463 (1282)
T ss_pred HHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccccccc----
Confidence 33345566788889999999999888877665544332 223333 33332332211 10 01011122222110
Q ss_pred HHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhh---hccCcEEEeecCC
Q psy7773 634 RALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTF---YNSSHRVLLTGTP 705 (1281)
Q Consensus 634 ~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~---~~~~~rllLTgTP 705 (1281)
.........--++.||-+.+.+..... .....++|+||.|..--..--+...+..+ |+--+.+++|+|-
T Consensus 464 --f~Sa~prpyg~i~fctvgvllr~~e~g-lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatI 535 (1282)
T KOG0921|consen 464 --FDSATPRPYGSIMFCTVGVLLRMMENG-LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATI 535 (1282)
T ss_pred --ccccccccccceeeeccchhhhhhhhc-ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhccc
Confidence 011112233456778888776653221 23567899999998765554444444443 3344557899984
No 480
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=82.80 E-value=6.5 Score=41.65 Aligned_cols=24 Identities=29% Similarity=0.409 Sum_probs=20.9
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHH
Q psy7773 567 GILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~~ 590 (1281)
-|+..+.|+|||..+..++..+..
T Consensus 17 ~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 17 YLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 468999999999999999888864
No 481
>PRK10865 protein disaggregation chaperone; Provisional
Probab=82.78 E-value=3.6 Score=54.27 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=26.4
Q ss_pred HHHHHHh--hcCCCCeEEecCCCCCHHHHHHHHHHHHH
Q psy7773 554 LEWMVSL--YNNNLNGILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 554 v~~l~~~--~~~~~~gILademGlGKTi~ai~ll~~l~ 589 (1281)
+..++.. .....|.||..++|.|||..+-+++..+.
T Consensus 187 i~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 187 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred HHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhh
Confidence 5555542 23455789999999999999988777654
No 482
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=82.73 E-value=3.4 Score=43.32 Aligned_cols=109 Identities=21% Similarity=0.191 Sum_probs=57.1
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCcEEEEeCCHHHHHHHHhhhccCCccE
Q psy7773 568 ILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSANVVAYKGSPLARRALQGRMKNSKFNV 647 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~v 647 (1281)
++..+|++|||..-|-.+.... -...+++|..|..-- .+....+..-.|. ...-+
T Consensus 8 ~i~gpM~SGKT~eLl~r~~~~~---~~g~~v~vfkp~iD~---------R~~~~~V~Sr~G~-------------~~~A~ 62 (201)
T COG1435 8 FIYGPMFSGKTEELLRRARRYK---EAGMKVLVFKPAIDT---------RYGVGKVSSRIGL-------------SSEAV 62 (201)
T ss_pred EEEccCcCcchHHHHHHHHHHH---HcCCeEEEEeccccc---------ccccceeeeccCC-------------cccce
Confidence 5678999999986555444433 233478888885421 1211222222221 11123
Q ss_pred EEechHHHhhcccccc-cCceeEEEEeCCccccccchHHHHHHHhhhcc-CcEEEeecC
Q psy7773 648 LLTTYEFIIKDKSVLS-KIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNS-SHRVLLTGT 704 (1281)
Q Consensus 648 vItTye~l~~~~~~l~-~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~-~~rllLTgT 704 (1281)
+|-+...+........ ....++|+|||||-+... +...+..+... ..++++.|.
T Consensus 63 ~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF~~~~---~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 63 VIPSDTDIFDEIAALHEKPPVDCVLIDEAQFFDEE---LVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred ecCChHHHHHHHHhcccCCCcCEEEEehhHhCCHH---HHHHHHHHHhhcCCEEEEecc
Confidence 3333333322222221 112689999999998663 35555555444 566777664
No 483
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=82.73 E-value=10 Score=46.77 Aligned_cols=131 Identities=17% Similarity=0.143 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhhcCCC------CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCC-EEEEeCCccH-HHHHHHHHHHC-
Q psy7773 548 EYQIKGLEWMVSLYNNNL------NGILADEMGLGKTVQTIALLTYLMEKKKNLGP-YLVIVPLSTL-SNWVLEFEKWA- 618 (1281)
Q Consensus 548 ~yQ~~gv~~l~~~~~~~~------~gILademGlGKTi~ai~ll~~l~~~~~~~~~-~LIV~P~s~l-~~W~~E~~~~~- 618 (1281)
|+|.-.+..++.. .+.. .++|.-.=|-|||..+.+++.+.+.-.+..++ ++++++..-. ..-...+....
T Consensus 1 PwQ~fi~~~i~G~-~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~ 79 (477)
T PF03354_consen 1 PWQKFILRSIFGW-RKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIE 79 (477)
T ss_pred CcHHHHHHHHhce-EcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHH
Confidence 6788777666543 2222 24666678999999988887776644444444 5555554322 11122222222
Q ss_pred --CCCcEEEEeCCHHHHHHHHhhhccCCccEEEe----chHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHh
Q psy7773 619 --PSANVVAYKGSPLARRALQGRMKNSKFNVLLT----TYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNT 691 (1281)
Q Consensus 619 --p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvIt----Tye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~ 691 (1281)
|.+.... +.. . .......+... .+..+..+...+...+.+++|+||+|..++.. ++.++..
T Consensus 80 ~~~~l~~~~--~~~-----~---~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~--~~~~l~~ 146 (477)
T PF03354_consen 80 ASPELRKRK--KPK-----I---IKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDE--LYDALES 146 (477)
T ss_pred hChhhccch--hhh-----h---hhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHH--HHHHHHh
Confidence 2221100 000 0 00001111111 11122344556666788999999999998742 4444443
No 484
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=82.53 E-value=0.81 Score=47.70 Aligned_cols=121 Identities=20% Similarity=0.211 Sum_probs=48.9
Q ss_pred EecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHC-CCCcEEEEeCCHHHHHHHHhhhccCCccE
Q psy7773 569 LADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWA-PSANVVAYKGSPLARRALQGRMKNSKFNV 647 (1281)
Q Consensus 569 LademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~-p~~~~~~~~g~~~~r~~~~~~~~~~~~~v 647 (1281)
|-.+-|-|||.....++..++.... .+++|.+|...-.+- +-.|. ..+....|....................|
T Consensus 2 ltA~RGRGKSa~lGl~~a~l~~~~~--~~I~vtAP~~~~~~~---lf~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i 76 (177)
T PF05127_consen 2 LTADRGRGKSAALGLAAAALIQKGK--IRILVTAPSPENVQT---LFEFAEKGLKALGYKEEKKKRIGQIIKLRFNKQRI 76 (177)
T ss_dssp EEE-TTSSHHHHHHHCCCCSSS-------EEEE-SS--S-HH---HHHCC--------------------------CCC-
T ss_pred ccCCCCCCHHHHHHHHHHHHHHhcC--ceEEEecCCHHHHHH---HHHHHHhhccccccccccccccccccccccccceE
Confidence 3345899999877666666543322 578888895432221 11111 11222222221111111111111223445
Q ss_pred EEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEEeecCC
Q psy7773 648 LLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLTGTP 705 (1281)
Q Consensus 648 vItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllLTgTP 705 (1281)
-...++.+.... ...|+||||||=-+- .-.|..+.....+++||.|-
T Consensus 77 ~f~~Pd~l~~~~-----~~~DlliVDEAAaIp------~p~L~~ll~~~~~vv~stTi 123 (177)
T PF05127_consen 77 EFVAPDELLAEK-----PQADLLIVDEAAAIP------LPLLKQLLRRFPRVVFSTTI 123 (177)
T ss_dssp -B--HHHHCCT---------SCEEECTGGGS-------HHHHHHHHCCSSEEEEEEEB
T ss_pred EEECCHHHHhCc-----CCCCEEEEechhcCC------HHHHHHHHhhCCEEEEEeec
Confidence 445555443322 146899999998663 33444555677889998883
No 485
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=82.14 E-value=17 Score=42.33 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=19.5
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHH
Q psy7773 565 LNGILADEMGLGKTVQTIALLTYL 588 (1281)
Q Consensus 565 ~~gILademGlGKTi~ai~ll~~l 588 (1281)
.+.++..+.|+|||..+-+++..+
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHh
Confidence 356899999999999888776554
No 486
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=81.75 E-value=5.1 Score=40.32 Aligned_cols=53 Identities=26% Similarity=0.389 Sum_probs=38.2
Q ss_pred EEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCccc--CCEEEEeCCCCC
Q psy7773 916 LRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQA--ADTVIIFDSDWN 971 (1281)
Q Consensus 916 ~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~--ad~VI~~D~~wn 971 (1281)
+.+-| ....+...+++.|.....+ .+|+++...++|||+++ +..||+.-.|+-
T Consensus 26 i~~e~-~~~~~~~~~l~~f~~~~~~--~iL~~~~~~~EGiD~~g~~~r~vii~glPfp 80 (141)
T smart00492 26 LLVQG-EDGKETGKLLEKYVEACEN--AILLATARFSEGVDFPGDYLRAVIIDGLPFP 80 (141)
T ss_pred EEEeC-CChhHHHHHHHHHHHcCCC--EEEEEccceecceecCCCCeeEEEEEecCCC
Confidence 34444 3344578899999864322 36888877999999996 789999998863
No 487
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=81.68 E-value=17 Score=40.89 Aligned_cols=125 Identities=11% Similarity=0.085 Sum_probs=64.3
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC----ccHHHHHHHHHHHCCCCcEEEEeCCHHHHHHHHhhh
Q psy7773 565 LNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL----STLSNWVLEFEKWAPSANVVAYKGSPLARRALQGRM 640 (1281)
Q Consensus 565 ~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~----s~l~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~ 640 (1281)
....+....|+|||..+..++..+... ..++.+|.-. ..+.||.. |+....
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~---~~~v~~i~~D~~ri~~~~ql~~----~~~~~~------------------ 130 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITTDHSRIGTVQQLQD----YVKTIG------------------ 130 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEecCCCCHHHHHHHHH----HhhhcC------------------
Confidence 345677889999999887776665421 2345555442 23455553 321111
Q ss_pred ccCCccEEE-echHHHhhccccccc-CceeEEEEeCCccccccchHHHHHHHhhh---ccC-cEEEeecCCCCCChhHHH
Q psy7773 641 KNSKFNVLL-TTYEFIIKDKSVLSK-IQWKCMIIDEGHRMKNHHCKLTQTLNTFY---NSS-HRVLLTGTPLQNKLPELW 714 (1281)
Q Consensus 641 ~~~~~~vvI-tTye~l~~~~~~l~~-~~w~~vIvDEaHr~kn~~s~~~~~l~~~~---~~~-~rllLTgTPl~n~~~el~ 714 (1281)
+.+.. .+...+......+.. .++++||||-+-+.-+....+. .+..+. ... ..|.|+||--.+...+..
T Consensus 131 ----~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~-el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~ 205 (270)
T PRK06731 131 ----FEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVE-EMIETMGQVEPDYICLTLSASMKSKDMIEII 205 (270)
T ss_pred ----ceEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHH-HHHHHHhhhCCCeEEEEEcCccCHHHHHHHH
Confidence 22221 122233222222322 2579999999988754333222 222221 222 345688886666665555
Q ss_pred HHHhh
Q psy7773 715 ALLNF 719 (1281)
Q Consensus 715 ~ll~f 719 (1281)
..++-
T Consensus 206 ~~f~~ 210 (270)
T PRK06731 206 TNFKD 210 (270)
T ss_pred HHhCC
Confidence 44443
No 488
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=81.23 E-value=3.6 Score=43.45 Aligned_cols=142 Identities=14% Similarity=0.085 Sum_probs=69.8
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHH-HHHH--HHHCCCCcEEEEeCCHHHHHHHHhh
Q psy7773 563 NNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNW-VLEF--EKWAPSANVVAYKGSPLARRALQGR 639 (1281)
Q Consensus 563 ~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W-~~E~--~~~~p~~~~~~~~g~~~~r~~~~~~ 639 (1281)
...+.++....|-|||-.|+++....... ..+++||-=.- ..| ..|. .+..|++.+..+...-... .
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~---G~~V~ivQFlK--g~~~~GE~~~l~~l~~v~~~~~g~~~~~~----~- 90 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH---GKKVGVVQFIK--GAWSTGERNLLEFGGGVEFHVMGTGFTWE----T- 90 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC---CCeEEEEEEec--CCCccCHHHHHhcCCCcEEEECCCCCccc----C-
Confidence 34456788899999999999988776633 34666653211 112 1122 2222333333222110000 0
Q ss_pred hccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccc----hHHHHHHHhhhccCcEEEeecCCCCCChhHHHH
Q psy7773 640 MKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHH----CKLTQTLNTFYNSSHRVLLTGTPLQNKLPELWA 715 (1281)
Q Consensus 640 ~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~----s~~~~~l~~~~~~~~rllLTgTPl~n~~~el~~ 715 (1281)
...-.-.-.-...+......+..-.|++||+||.-.+-+.. ..+...|..- +..--++|||--....+-++..
T Consensus 91 --~~~~e~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~r-p~~~evVlTGR~~p~~Lie~AD 167 (191)
T PRK05986 91 --QDRERDIAAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNAR-PGMQHVVITGRGAPRELIEAAD 167 (191)
T ss_pred --CCcHHHHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcC-CCCCEEEEECCCCCHHHHHhCc
Confidence 00000000000112223445556689999999988766533 3334444321 3344699999844444444433
Q ss_pred HH
Q psy7773 716 LL 717 (1281)
Q Consensus 716 ll 717 (1281)
++
T Consensus 168 lV 169 (191)
T PRK05986 168 LV 169 (191)
T ss_pred hh
Confidence 33
No 489
>PRK09183 transposase/IS protein; Provisional
Probab=81.14 E-value=7.2 Score=43.77 Aligned_cols=27 Identities=37% Similarity=0.300 Sum_probs=22.4
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHH
Q psy7773 563 NNLNGILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 563 ~~~~gILademGlGKTi~ai~ll~~l~ 589 (1281)
.+.+.+|..++|+|||..+.++...+.
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 466788999999999999998866654
No 490
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=81.10 E-value=15 Score=40.47 Aligned_cols=47 Identities=9% Similarity=0.062 Sum_probs=32.2
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHH
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLE 613 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E 613 (1281)
+.-.++..++|+|||..+..++..+... ..+++.|+......+-...
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~---g~~~~yi~~e~~~~~~~~~ 70 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQN---GYSVSYVSTQLTTTEFIKQ 70 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEEeCCCCHHHHHHH
Confidence 4445789999999999998888877532 2467777765444433333
No 491
>PHA02244 ATPase-like protein
Probab=81.06 E-value=12 Score=43.59 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=25.9
Q ss_pred cCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe
Q psy7773 562 NNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIV 602 (1281)
Q Consensus 562 ~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~ 602 (1281)
..+.+.+|..++|+|||..+-++...+ ..|++.|.
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~l------g~pfv~In 151 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEAL------DLDFYFMN 151 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHh------CCCEEEEe
Confidence 357788999999999999887776553 23655553
No 492
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=80.95 E-value=10 Score=50.64 Aligned_cols=130 Identities=15% Similarity=0.105 Sum_probs=73.4
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCcE
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSANV 623 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~~ 623 (1281)
..|.+-|..++..+.. .+.-++|....|+|||.+.-++...+ ... ...++.++|+.....=. ..-. +...
T Consensus 380 ~~Ls~eQ~~Av~~i~~---~~r~~~v~G~AGTGKTt~l~~~~~~~-e~~--G~~V~g~ApTgkAA~~L---~e~~-Gi~a 449 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAG---PARIAAVVGRAGAGKTTMMKAAREAW-EAA--GYRVVGGALAGKAAEGL---EKEA-GIQS 449 (1102)
T ss_pred CCCCHHHHHHHHHHhc---cCCeEEEEeCCCCCHHHHHHHHHHHH-HHc--CCeEEEEcCcHHHHHHH---HHhh-CCCe
Confidence 4799999999987642 23446778889999998776655443 332 24778888876553222 2111 1111
Q ss_pred EEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEEeec
Q psy7773 624 VAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLTG 703 (1281)
Q Consensus 624 ~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllLTg 703 (1281)
..++. .+... . .....+ -.-++||||||..+.... +...+...-....+++|.|
T Consensus 450 ~TIas------~ll~~---~-------------~~~~~l--~~~~vlVIDEAsMv~~~~--m~~Ll~~~~~~garvVLVG 503 (1102)
T PRK13826 450 RTLSS------WELRW---N-------------QGRDQL--DNKTVFVLDEAGMVASRQ--MALFVEAVTRAGAKLVLVG 503 (1102)
T ss_pred eeHHH------HHhhh---c-------------cCccCC--CCCcEEEEECcccCCHHH--HHHHHHHHHhcCCEEEEEC
Confidence 11100 00000 0 000111 124699999999885443 3344443324678999999
Q ss_pred CCCCCC
Q psy7773 704 TPLQNK 709 (1281)
Q Consensus 704 TPl~n~ 709 (1281)
=|-|-.
T Consensus 504 D~~QL~ 509 (1102)
T PRK13826 504 DPEQLQ 509 (1102)
T ss_pred CHHHcC
Confidence 987743
No 493
>KOG0442|consensus
Probab=80.85 E-value=28 Score=44.22 Aligned_cols=342 Identities=18% Similarity=0.185 Sum_probs=153.1
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHH-HHHHC--CC
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLE-FEKWA--PS 620 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E-~~~~~--p~ 620 (1281)
..|.+||...+.-++ ...+|++....|||=--.++.++..+ ... ..|+++=. ...|..+ |.... |.
T Consensus 12 ~~lL~Ye~qv~~~ll----~~d~~L~V~a~GLsl~~l~~~~l~~~----s~~-~sL~LvLN--~~~~ee~~f~s~lk~~~ 80 (892)
T KOG0442|consen 12 MALLEYEQQVLLELL----EADGNLLVLAPGLSLLRLVAELLILF----SPP-GSLVLVLN--TQEAEEEYFSSKLKEPL 80 (892)
T ss_pred cccchhHHHHHHhhh----cccCceEEecCCcCHHHHHHHHHHHh----CCc-cceEEEec--CchhhHHHHHHhcCcCC
Confidence 348899999887666 24455777778998655554444332 222 23444433 3445544 11111 11
Q ss_pred CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhc--ccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcE
Q psy7773 621 ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKD--KSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHR 698 (1281)
Q Consensus 621 ~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~--~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~r 698 (1281)
...+.-.-+...|+... ....|+++|--.|..+ ...+.......++|+=||.+.+.... +-++ ++|+...+
T Consensus 81 ~t~~~s~ls~~~R~~~Y-----l~GGv~fiSsRiLvvDlLt~rIp~~ki~gI~vl~Ah~i~ets~e-aFIl-Rl~R~knk 153 (892)
T KOG0442|consen 81 VTEDPSELSVNKRRSKY-----LEGGVFFISSRILVVDLLTGRIPTEKITGILVLNAHTISETSQE-AFIL-RLYRSKNK 153 (892)
T ss_pred CccChhhcchhhhHHhh-----hcCCeEEeeeceeeeehhcCccchhHcceEEEechhhhhhcchh-HHHH-HHHHHhcC
Confidence 11111111112222211 2234555555544443 22333346789999999999876543 2233 23344333
Q ss_pred ----EEeecCCCC--CChhHHHHHHhhhcCCCCCChhHHHHHhcccccCC-----cccccCCHHHHHHHHHHHHHhhhHH
Q psy7773 699 ----VLLTGTPLQ--NKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATT-----GEKVELNEEETILIIRRLHKVLRPF 767 (1281)
Q Consensus 699 ----llLTgTPl~--n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~-----~~~~~~~~~~~~~~~~~L~~~l~~~ 767 (1281)
=.+|--|.. ..+.-+-..+.+|.-...--+-.|...+..+.... .-.+..... ...+-..|..+++.+
T Consensus 154 ~gfIkAFsd~P~sf~~gf~~l~r~mR~Lfvr~v~l~PRF~~~V~s~L~~~~~kVvei~V~~s~~-~~~iQ~~lleii~~c 232 (892)
T KOG0442|consen 154 TGFIKAFSDSPESFVSGFSHLERKMRNLFVRHVLLWPRFHVNVESSLNQLPPKVVEINVSMSNS-MSQIQSHLLEIIKKC 232 (892)
T ss_pred CcceeccccCchhhhccchHHHHHHHHHHhhhheeccchHhHHhhhhccCCCceEEEEeecCcc-HHHHHHHHHHHHHHH
Confidence 345555533 22222333333332221112223322222222111 111111111 011122233444443
Q ss_pred H--HHHhHHHH--hh-----cCC-------CceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHH
Q psy7773 768 L--LRRLKKEV--ES-----QLP-------EKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTI 831 (1281)
Q Consensus 768 ~--lRR~k~~v--~~-----~lP-------~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 831 (1281)
+ ++|.-..+ .. .+- ...-..+|..++..++.+...+......+.. .......+++..+
T Consensus 233 lrel~r~n~~~~~ee~~~E~~~~~sf~~i~~~~Ld~~wh~ls~ktkqlv~Dl~~LR~Ll~~------L~~~D~vsfl~~l 306 (892)
T KOG0442|consen 233 LRELKRLNPELDMEEVNVENILDKSFDKILRSQLDPIWHQLSTKTKQLVNDLKTLRILLKS------LVSYDAVSFLKIL 306 (892)
T ss_pred HHHHHhhCcccchhhcchhhcccccHHHHHHHhhchhhhhccHHHHHHHHHHHHHHHHHHH------HhcccHHHHHHHH
Confidence 3 33333321 10 000 1122234667777777776665332211110 0112233444444
Q ss_pred HHHHHh---cC--CccchhhhHHHHHhhhcCCCccccCCccccccchHHHHHHHhhh-hhh---------cCCeEEEEec
Q psy7773 832 VQLRKL---CN--HPFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPK-FKE---------TKHRVLMFCQ 896 (1281)
Q Consensus 832 ~~Lrk~---~~--hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~-~~~---------~~~kvLIFsq 896 (1281)
..||.. .. .+|++......+...................++|+..|.++|.+ ... ....|||-|.
T Consensus 307 ~tlr~~~~~~s~~s~Wl~ldss~~i~~~a~~rv~~~~~e~~lE~~pKw~~Ltdil~~e~~~~~~~~~~~~~~~~Vlv~c~ 386 (892)
T KOG0442|consen 307 KTLRNSEIVSSIPSGWLLLDSSNKIFEEARKRVYSLENESELEECPKWEVLTDILFKEIEHEKERADRSNDQGSVLVACS 386 (892)
T ss_pred HHHHhhhhhccCCCCceecchHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHhhhhhHHHHhhhcCCCCceEEEec
Confidence 444432 22 25665443322221111111111123456678999999999933 221 2346999999
Q ss_pred hHHHHHHHHHHHHH
Q psy7773 897 MTQLMTILEDYFIW 910 (1281)
Q Consensus 897 ~~~~ld~L~~~L~~ 910 (1281)
.-.+...|.++|..
T Consensus 387 dertC~ql~d~lt~ 400 (892)
T KOG0442|consen 387 DERTCAQLRDYLTL 400 (892)
T ss_pred cchhHHHHHHHHhc
Confidence 99999999998874
No 494
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=80.81 E-value=6 Score=48.56 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=21.9
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHH
Q psy7773 563 NNLNGILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 563 ~~~~gILademGlGKTi~ai~ll~~l~ 589 (1281)
...|.+|.-++|+|||..+-+++..+.
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 345678999999999999888877663
No 495
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=80.65 E-value=2.5 Score=44.38 Aligned_cols=35 Identities=20% Similarity=0.133 Sum_probs=24.4
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc
Q psy7773 568 ILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS 605 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s 605 (1281)
++.-+|++|||...+..+..+.. ...+++++-|.-
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~---~~~~v~~~kp~~ 39 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEI---AGKKVLVFKPAI 39 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHH---TT-EEEEEEEST
T ss_pred EEECCcCChhHHHHHHHHHHHHh---CCCeEEEEEecc
Confidence 45678999999988877765542 224778888753
No 496
>KOG0737|consensus
Probab=80.34 E-value=3.9 Score=46.89 Aligned_cols=49 Identities=20% Similarity=0.185 Sum_probs=32.1
Q ss_pred cCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHH
Q psy7773 562 NNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEK 616 (1281)
Q Consensus 562 ~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~ 616 (1281)
....|.+|-.++|+|||+.|-++.... ..+++=|--.++...|.-|-.+
T Consensus 125 ~p~kGiLL~GPpG~GKTmlAKA~Akea------ga~fInv~~s~lt~KWfgE~eK 173 (386)
T KOG0737|consen 125 RPPKGILLYGPPGTGKTMLAKAIAKEA------GANFINVSVSNLTSKWFGEAQK 173 (386)
T ss_pred cCCccceecCCCCchHHHHHHHHHHHc------CCCcceeeccccchhhHHHHHH
Confidence 356677899999999999988776442 1344444445555666655444
No 497
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=80.09 E-value=3 Score=45.06 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=16.3
Q ss_pred CeEEecCCCCCHHHHHHHHHH
Q psy7773 566 NGILADEMGLGKTVQTIALLT 586 (1281)
Q Consensus 566 ~gILademGlGKTi~ai~ll~ 586 (1281)
+.||..++|+|||-.|-.+..
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~ 72 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIAN 72 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCccchhHHHHHHHh
Confidence 479999999999976654443
No 498
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=79.47 E-value=6.6 Score=46.32 Aligned_cols=23 Identities=22% Similarity=0.196 Sum_probs=19.9
Q ss_pred EEecCCCCCHHHHHHHHHHHHHH
Q psy7773 568 ILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~ 590 (1281)
||..+.|+|||..+-.++..+..
T Consensus 40 Ll~G~~G~GKt~~a~~la~~l~~ 62 (355)
T TIGR02397 40 LFSGPRGTGKTSIARIFAKALNC 62 (355)
T ss_pred EEECCCCCCHHHHHHHHHHHhcC
Confidence 78999999999999888887753
No 499
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=79.28 E-value=12 Score=47.09 Aligned_cols=84 Identities=8% Similarity=0.105 Sum_probs=55.9
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCC----CCCceEEEEeccccccCCCC-----
Q psy7773 184 TKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEP----ESKYFIFLLSTRAGGLGLNL----- 254 (1281)
Q Consensus 184 ~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~----~~~~~vll~st~~~~~GlnL----- 254 (1281)
.|.-.|.|+.+. .+..+...|...---.+.+.|..+ .+..+++.|... .. -+|+.|.+..+|+++
T Consensus 470 ~G~~lvLfTS~~-~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~---~vL~gt~sfweGvDv~~~~~ 543 (636)
T TIGR03117 470 QGGTLVLTTAFS-HISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQ---PVLIAAGGAWTGIDLTHKPV 543 (636)
T ss_pred CCCEEEEechHH-HHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCC---cEEEeCCccccccccCCccC
Confidence 455566666554 455566566443112345666554 467899999863 23 368888999999999
Q ss_pred ---C--CCCEEEEeCCCCCcchhh
Q psy7773 255 ---Q--AADTVIIFDSDWNPHQDL 273 (1281)
Q Consensus 255 ---~--~a~~vi~~d~~wnp~~~~ 273 (1281)
. ..+.|||.-+|+-|..-.
T Consensus 544 ~p~~G~~Ls~ViI~kLPF~~~dp~ 567 (636)
T TIGR03117 544 SPDKDNLLTDLIITCAPFGLNRSL 567 (636)
T ss_pred CCCCCCcccEEEEEeCCCCcCChH
Confidence 2 578999999998875443
No 500
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=79.21 E-value=7.1 Score=46.28 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=19.8
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHH
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYL 588 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l 588 (1281)
+.+.+|..+.|+|||..+-+++..+
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC
Confidence 4457899999999999887776543
Done!