Query psy7773
Match_columns 1281
No_of_seqs 819 out of 5023
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 18:32:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7773.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7773hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 3.3E-79 1.1E-83 790.6 34.1 519 532-1069 223-760 (800)
2 1z3i_X Similar to RAD54-like; 100.0 2.6E-72 8.9E-77 708.5 37.7 497 542-1047 52-572 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 1.5E-66 5E-71 642.6 34.0 443 540-1024 32-477 (500)
4 3dmq_A RNA polymerase-associat 100.0 2.6E-49 8.9E-54 518.1 29.8 438 543-1019 151-634 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 4.2E-43 1.4E-47 431.1 33.1 438 544-1018 8-493 (494)
6 1z3i_X Similar to RAD54-like; 100.0 4.7E-42 1.6E-46 432.7 24.7 316 1-321 229-552 (644)
7 3mwy_W Chromo domain-containin 100.0 1.1E-41 3.8E-46 440.2 24.3 304 1-322 404-709 (800)
8 1z5z_A Helicase of the SNF2/RA 100.0 3.6E-40 1.2E-44 369.2 19.3 236 767-1024 12-248 (271)
9 1z5z_A Helicase of the SNF2/RA 100.0 3E-39 1E-43 361.7 21.3 237 63-321 11-248 (271)
10 2fwr_A DNA repair protein RAD2 100.0 2.9E-39 9.9E-44 395.7 19.1 376 543-1017 91-471 (472)
11 1z63_A Helicase of the SNF2/RA 100.0 1E-37 3.6E-42 384.7 23.9 289 1-321 186-477 (500)
12 4a2q_A RIG-I, retinoic acid in 100.0 7.6E-37 2.6E-41 396.4 32.3 451 542-1023 245-771 (797)
13 4a2p_A RIG-I, retinoic acid in 100.0 2E-36 7E-41 378.7 33.0 450 544-1023 6-530 (556)
14 4a2w_A RIG-I, retinoic acid in 100.0 1.1E-36 3.8E-41 398.5 30.4 452 543-1023 246-771 (936)
15 3tbk_A RIG-I helicase domain; 100.0 1.6E-35 5.5E-40 370.3 30.8 452 545-1022 4-528 (555)
16 3hgt_A HDA1 complex subunit 3; 100.0 2.3E-34 7.7E-39 319.6 15.2 218 780-1011 20-248 (328)
17 4gl2_A Interferon-induced heli 100.0 2.3E-33 8E-38 360.6 26.6 444 544-1022 6-541 (699)
18 2oca_A DAR protein, ATP-depend 100.0 5.2E-33 1.8E-37 343.6 26.8 347 544-1006 112-464 (510)
19 2ykg_A Probable ATP-dependent 100.0 4.6E-33 1.6E-37 357.6 26.1 437 543-1005 11-521 (696)
20 3h1t_A Type I site-specific re 100.0 5.5E-32 1.9E-36 340.1 23.9 354 543-997 176-558 (590)
21 1xti_A Probable ATP-dependent 100.0 1.2E-30 4E-35 311.3 27.0 329 544-1010 29-366 (391)
22 1hv8_A Putative ATP-dependent 100.0 5.7E-30 2E-34 302.2 27.0 313 544-1001 27-346 (367)
23 1s2m_A Putative ATP-dependent 100.0 7.9E-30 2.7E-34 305.1 25.7 317 545-1001 43-366 (400)
24 2j0s_A ATP-dependent RNA helic 100.0 5.2E-30 1.8E-34 307.8 24.0 320 544-1001 58-384 (410)
25 2z0m_A 337AA long hypothetical 100.0 2.1E-29 7.1E-34 293.8 23.6 313 544-1010 15-334 (337)
26 3hgt_A HDA1 complex subunit 3; 100.0 1.1E-29 3.7E-34 282.1 17.7 215 77-306 20-246 (328)
27 3pey_A ATP-dependent RNA helic 100.0 9.4E-29 3.2E-33 294.9 26.8 312 544-993 26-351 (395)
28 3eiq_A Eukaryotic initiation f 100.0 2.7E-29 9.3E-34 301.8 21.6 320 544-1000 61-387 (414)
29 2db3_A ATP-dependent RNA helic 100.0 3.8E-28 1.3E-32 293.0 29.1 315 544-998 77-405 (434)
30 1fuu_A Yeast initiation factor 100.0 1.1E-29 3.7E-34 303.1 13.7 318 544-1000 42-366 (394)
31 2i4i_A ATP-dependent RNA helic 100.0 1.2E-27 4E-32 287.9 28.1 319 544-1000 36-383 (417)
32 3fht_A ATP-dependent RNA helic 100.0 1.5E-27 5.2E-32 286.3 25.7 328 544-1011 46-389 (412)
33 3oiy_A Reverse gyrase helicase 100.0 4.4E-27 1.5E-31 282.6 28.3 319 543-1015 19-376 (414)
34 1oyw_A RECQ helicase, ATP-depe 100.0 2.3E-27 8E-32 291.5 25.6 305 544-994 24-339 (523)
35 2v1x_A ATP-dependent DNA helic 99.9 1.9E-26 6.6E-31 286.1 25.7 310 544-994 43-370 (591)
36 2eyq_A TRCF, transcription-rep 99.9 5.6E-26 1.9E-30 301.1 27.3 310 543-999 601-921 (1151)
37 3fho_A ATP-dependent RNA helic 99.9 3.4E-27 1.2E-31 290.1 11.9 314 545-994 141-466 (508)
38 3sqw_A ATP-dependent RNA helic 99.9 1.1E-25 3.7E-30 281.9 25.0 329 544-1000 42-398 (579)
39 3i5x_A ATP-dependent RNA helic 99.9 3.7E-25 1.3E-29 276.8 26.8 328 544-1000 93-449 (563)
40 3fmp_B ATP-dependent RNA helic 99.9 1.6E-26 5.4E-31 283.1 13.4 313 544-993 113-441 (479)
41 1gm5_A RECG; helicase, replica 99.9 1.5E-25 5.3E-30 283.4 16.9 307 545-994 368-693 (780)
42 2xgj_A ATP-dependent RNA helic 99.9 6.6E-24 2.3E-28 277.2 32.3 364 542-1001 83-500 (1010)
43 3dmq_A RNA polymerase-associat 99.9 4.1E-24 1.4E-28 280.0 22.2 284 1-319 315-637 (968)
44 3l9o_A ATP-dependent RNA helic 99.9 4.5E-24 1.5E-28 281.2 22.2 364 543-1003 182-600 (1108)
45 4a4z_A Antiviral helicase SKI2 99.9 4.2E-22 1.4E-26 260.2 31.3 399 542-1008 36-500 (997)
46 2va8_A SSO2462, SKI2-type heli 99.9 3.6E-22 1.2E-26 256.5 27.4 326 545-1001 30-409 (715)
47 2p6r_A Afuhel308 helicase; pro 99.9 1.6E-22 5.3E-27 259.0 23.6 321 545-1003 25-391 (702)
48 2zj8_A DNA helicase, putative 99.9 2.9E-22 1E-26 257.1 24.7 322 545-1004 23-391 (720)
49 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 3.5E-22 1.2E-26 259.0 24.7 156 545-708 271-441 (1038)
50 4ddu_A Reverse gyrase; topoiso 99.9 6.1E-22 2.1E-26 260.8 26.7 321 543-1017 76-505 (1104)
51 1gku_B Reverse gyrase, TOP-RG; 99.9 7.1E-21 2.4E-25 251.1 22.3 317 544-1016 56-468 (1054)
52 2v6i_A RNA helicase; membrane, 99.8 2.7E-19 9.3E-24 214.7 16.3 95 888-990 171-282 (431)
53 1wp9_A ATP-dependent RNA helic 99.8 1.2E-18 4.3E-23 213.0 22.0 143 166-314 340-492 (494)
54 1tf5_A Preprotein translocase 99.8 3.1E-18 1E-22 212.0 24.7 117 870-991 414-538 (844)
55 2jlq_A Serine protease subunit 99.8 2.4E-19 8.1E-24 216.7 13.8 93 888-988 188-300 (451)
56 2wv9_A Flavivirin protease NS2 99.8 3.4E-19 1.2E-23 223.0 11.6 97 887-991 409-526 (673)
57 2z83_A Helicase/nucleoside tri 99.8 8.6E-19 2.9E-23 212.1 14.2 104 888-1000 190-313 (459)
58 1yks_A Genome polyprotein [con 99.8 1.1E-18 3.9E-23 209.7 15.1 97 887-991 176-292 (440)
59 1nkt_A Preprotein translocase 99.8 7.3E-17 2.5E-21 199.0 29.6 117 870-991 442-610 (922)
60 2fsf_A Preprotein translocase 99.8 7.5E-18 2.6E-22 207.8 20.5 118 870-992 423-577 (853)
61 1rif_A DAR protein, DNA helica 99.8 1.4E-18 5E-23 196.7 13.1 164 544-722 112-278 (282)
62 2whx_A Serine protease/ntpase/ 99.8 4.1E-18 1.4E-22 212.0 16.0 103 887-998 354-476 (618)
63 1t5i_A C_terminal domain of A 99.7 1.1E-17 3.8E-22 174.3 15.0 124 869-999 14-137 (172)
64 3rc3_A ATP-dependent RNA helic 99.7 2.4E-17 8.2E-22 205.5 19.2 107 891-999 323-444 (677)
65 3o8b_A HCV NS3 protease/helica 99.7 9.1E-18 3.1E-22 206.6 15.0 263 562-1003 230-517 (666)
66 2xau_A PRE-mRNA-splicing facto 99.7 7.5E-18 2.5E-22 214.9 14.7 110 887-1002 302-445 (773)
67 2hjv_A ATP-dependent RNA helic 99.7 1.5E-17 5.3E-22 171.7 13.8 133 869-1010 18-150 (163)
68 2jgn_A DBX, DDX3, ATP-dependen 99.7 8.1E-18 2.8E-22 177.4 10.6 127 868-1000 27-153 (185)
69 4f92_B U5 small nuclear ribonu 99.7 4.1E-16 1.4E-20 212.6 29.1 160 545-715 926-1101(1724)
70 2fwr_A DNA repair protein RAD2 99.7 5.4E-18 1.8E-22 207.0 9.0 232 56-313 237-470 (472)
71 2d7d_A Uvrabc system protein B 99.7 1E-15 3.4E-20 192.5 29.3 125 872-1002 429-558 (661)
72 2fz4_A DNA repair protein RAD2 99.7 4.7E-17 1.6E-21 178.7 13.7 143 541-710 89-233 (237)
73 1fuk_A Eukaryotic initiation f 99.7 5.3E-17 1.8E-21 168.1 13.1 125 872-1003 16-140 (165)
74 2p6n_A ATP-dependent RNA helic 99.7 3.8E-17 1.3E-21 173.0 11.6 124 869-1000 38-161 (191)
75 1t5i_A C_terminal domain of A 99.7 2.5E-16 8.6E-21 164.0 15.4 136 167-310 15-150 (172)
76 4f92_B U5 small nuclear ribonu 99.7 7.2E-16 2.5E-20 210.2 23.9 160 544-715 78-262 (1724)
77 2hjv_A ATP-dependent RNA helic 99.7 2.7E-16 9.2E-21 162.4 15.0 136 166-310 18-153 (163)
78 2rb4_A ATP-dependent RNA helic 99.7 2.9E-16 9.9E-21 164.2 14.0 123 872-1001 20-148 (175)
79 3jux_A Protein translocase sub 99.7 5.3E-14 1.8E-18 169.9 35.1 117 870-991 456-580 (822)
80 2jgn_A DBX, DDX3, ATP-dependen 99.7 2.4E-16 8.1E-21 166.1 12.6 126 166-297 28-153 (185)
81 1c4o_A DNA nucleotide excision 99.7 2.9E-14 9.8E-19 179.3 32.0 127 870-1002 421-552 (664)
82 2yjt_D ATP-dependent RNA helic 99.5 1.2E-17 3.9E-22 174.0 0.0 119 871-994 15-133 (170)
83 3eaq_A Heat resistant RNA depe 99.6 5.9E-16 2E-20 167.0 12.8 125 869-1000 14-138 (212)
84 1fuk_A Eukaryotic initiation f 99.6 1.3E-15 4.3E-20 157.7 13.8 125 169-300 16-140 (165)
85 2p6n_A ATP-dependent RNA helic 99.6 8.7E-16 3E-20 162.5 12.1 124 166-297 38-161 (191)
86 1t6n_A Probable ATP-dependent 99.6 2.5E-15 8.4E-20 163.5 15.5 159 545-708 36-203 (220)
87 2gxq_A Heat resistant RNA depe 99.6 3E-15 1E-19 161.0 14.6 157 544-706 22-186 (207)
88 2rb4_A ATP-dependent RNA helic 99.6 5.7E-15 1.9E-19 154.3 14.0 124 169-299 20-149 (175)
89 2pl3_A Probable ATP-dependent 99.6 9.6E-15 3.3E-19 160.6 15.8 156 544-706 46-213 (236)
90 1q0u_A Bstdead; DEAD protein, 99.6 5.7E-15 2E-19 160.4 13.5 162 544-712 25-197 (219)
91 2oxc_A Probable ATP-dependent 99.6 1.1E-14 3.8E-19 159.4 15.6 154 545-705 46-208 (230)
92 3eaq_A Heat resistant RNA depe 99.6 1.7E-14 5.8E-19 155.5 16.7 136 166-310 14-149 (212)
93 3b6e_A Interferon-induced heli 99.6 3.3E-15 1.1E-19 161.7 10.8 133 543-681 31-177 (216)
94 1vec_A ATP-dependent RNA helic 99.6 1.6E-14 5.3E-19 155.3 15.6 157 544-706 24-188 (206)
95 3ber_A Probable ATP-dependent 99.6 1.3E-14 4.5E-19 160.7 15.4 157 544-706 64-228 (249)
96 1qde_A EIF4A, translation init 99.6 1.4E-14 4.7E-19 157.9 14.8 156 544-706 35-197 (224)
97 3i32_A Heat resistant RNA depe 99.6 6.4E-15 2.2E-19 166.5 12.3 126 869-1001 11-136 (300)
98 4a2p_A RIG-I, retinoic acid in 99.6 3.1E-15 1.1E-19 186.5 10.2 137 167-311 370-521 (556)
99 2yjt_D ATP-dependent RNA helic 99.3 3.3E-16 1.1E-20 162.9 0.0 117 168-289 15-131 (170)
100 3bor_A Human initiation factor 99.5 2.7E-14 9.1E-19 157.2 13.8 158 544-706 51-215 (237)
101 4a2q_A RIG-I, retinoic acid in 99.5 9.9E-15 3.4E-19 189.1 10.4 139 167-313 611-764 (797)
102 4a2w_A RIG-I, retinoic acid in 99.5 2E-14 6.9E-19 188.2 12.9 131 167-304 611-756 (936)
103 3tbk_A RIG-I helicase domain; 99.5 1.4E-14 4.9E-19 180.3 10.6 129 167-302 369-512 (555)
104 3i32_A Heat resistant RNA depe 99.5 3E-13 1E-17 152.7 19.5 124 167-297 12-135 (300)
105 1wrb_A DJVLGB; RNA helicase, D 99.5 1.2E-13 4E-18 153.7 15.8 157 544-706 44-220 (253)
106 3iuy_A Probable ATP-dependent 99.5 2.5E-13 8.7E-18 148.4 15.3 156 544-705 41-208 (228)
107 3ly5_A ATP-dependent RNA helic 99.5 4.5E-13 1.6E-17 149.5 15.5 157 544-706 75-243 (262)
108 3dkp_A Probable ATP-dependent 99.4 9.9E-13 3.4E-17 145.4 16.6 157 544-705 50-220 (245)
109 3fe2_A Probable ATP-dependent 99.4 1.1E-12 3.8E-17 144.7 15.3 156 544-705 50-217 (242)
110 1xti_A Probable ATP-dependent 99.4 1.1E-12 3.7E-17 155.7 15.3 139 167-313 234-372 (391)
111 4gl2_A Interferon-induced heli 99.4 3.4E-13 1.2E-17 172.9 8.6 130 167-303 379-525 (699)
112 1hv8_A Putative ATP-dependent 99.4 2.4E-12 8.2E-17 151.1 14.9 125 167-299 223-347 (367)
113 2j0s_A ATP-dependent RNA helic 99.4 2.1E-12 7.3E-17 154.3 12.8 124 169-299 262-385 (410)
114 1s2m_A Putative ATP-dependent 99.3 2.5E-12 8.6E-17 153.1 13.4 137 167-312 242-378 (400)
115 2db3_A ATP-dependent RNA helic 99.3 4.2E-12 1.4E-16 152.7 14.5 122 167-296 285-406 (434)
116 2i4i_A ATP-dependent RNA helic 99.3 4.7E-12 1.6E-16 151.6 13.1 126 167-298 259-384 (417)
117 3fmo_B ATP-dependent RNA helic 99.3 3.9E-12 1.3E-16 144.7 10.5 156 544-706 113-278 (300)
118 2ipc_A Preprotein translocase 99.3 2.1E-10 7.2E-15 141.3 25.9 147 543-717 77-239 (997)
119 3pey_A ATP-dependent RNA helic 99.3 1.4E-11 4.9E-16 146.0 15.4 122 168-296 228-355 (395)
120 2ykg_A Probable ATP-dependent 99.3 3.2E-12 1.1E-16 163.7 10.1 129 167-302 378-521 (696)
121 2z0m_A 337AA long hypothetical 99.3 2.9E-12 1E-16 148.5 8.7 115 183-305 218-332 (337)
122 2oca_A DAR protein, ATP-depend 99.3 1.2E-11 4.1E-16 152.2 14.0 132 169-304 331-465 (510)
123 3fht_A ATP-dependent RNA helic 99.3 1.9E-11 6.4E-16 146.0 14.6 136 168-311 251-392 (412)
124 3eiq_A Eukaryotic initiation f 99.3 6.1E-12 2.1E-16 150.4 9.5 124 168-298 265-388 (414)
125 2vl7_A XPD; helicase, unknown 99.3 1.5E-10 5E-15 142.7 21.5 92 875-973 370-466 (540)
126 1oyw_A RECQ helicase, ATP-depe 99.2 3.2E-11 1.1E-15 148.0 14.9 118 168-290 221-338 (523)
127 3h1t_A Type I site-specific re 99.2 2.9E-11 9.8E-16 151.6 10.9 111 183-294 437-558 (590)
128 2v1x_A ATP-dependent DNA helic 99.2 1E-10 3.4E-15 145.1 14.4 105 184-291 266-370 (591)
129 3sqw_A ATP-dependent RNA helic 99.2 1.1E-10 3.6E-15 145.9 14.2 120 183-309 286-408 (579)
130 1fuu_A Yeast initiation factor 99.1 3.8E-12 1.3E-16 151.1 0.0 121 170-297 246-366 (394)
131 3i5x_A ATP-dependent RNA helic 99.1 1.5E-10 5.3E-15 144.2 14.2 120 183-309 337-459 (563)
132 3oiy_A Reverse gyrase helicase 99.0 7E-10 2.4E-14 132.6 12.3 116 168-294 238-362 (414)
133 1c4o_A DNA nucleotide excision 99.0 1.7E-09 5.8E-14 136.0 13.5 124 168-297 422-550 (664)
134 3fmp_B ATP-dependent RNA helic 99.0 7.6E-11 2.6E-15 143.8 0.0 116 169-289 319-440 (479)
135 1tf5_A Preprotein translocase 98.9 9.1E-09 3.1E-13 127.9 17.1 115 168-287 415-537 (844)
136 2xgj_A ATP-dependent RNA helic 98.9 3.2E-09 1.1E-13 139.0 13.6 131 174-307 331-509 (1010)
137 2d7d_A Uvrabc system protein B 98.9 3.9E-09 1.3E-13 132.6 13.9 125 168-298 428-557 (661)
138 3fho_A ATP-dependent RNA helic 98.9 2.1E-10 7.1E-15 140.7 2.3 119 168-291 342-466 (508)
139 3jux_A Protein translocase sub 98.9 1.1E-08 3.7E-13 124.2 15.4 115 168-287 457-579 (822)
140 4a15_A XPD helicase, ATP-depen 98.9 1.5E-07 5.2E-12 117.2 25.9 82 545-628 3-87 (620)
141 3llm_A ATP-dependent RNA helic 98.8 3.5E-09 1.2E-13 115.9 8.4 151 545-706 61-219 (235)
142 2eyq_A TRCF, transcription-rep 98.8 5.5E-09 1.9E-13 138.8 10.8 122 170-297 798-922 (1151)
143 3l9o_A ATP-dependent RNA helic 98.8 1.3E-08 4.4E-13 134.5 13.8 136 172-310 427-610 (1108)
144 2fsf_A Preprotein translocase 98.8 2.8E-08 9.6E-13 123.2 15.8 115 167-286 423-574 (853)
145 2va8_A SSO2462, SKI2-type heli 98.8 2.2E-08 7.5E-13 128.2 14.3 118 178-298 245-409 (715)
146 3rc3_A ATP-dependent RNA helic 98.8 1.5E-08 5.1E-13 126.5 11.9 109 186-296 321-444 (677)
147 2p6r_A Afuhel308 helicase; pro 98.8 1.2E-08 4.1E-13 130.3 11.4 116 182-300 239-391 (702)
148 1nkt_A Preprotein translocase 98.7 7.9E-08 2.7E-12 119.4 16.4 114 168-286 443-608 (922)
149 2zj8_A DNA helicase, putative 98.7 2E-08 6.9E-13 128.6 11.6 116 183-301 235-391 (720)
150 1yks_A Genome polyprotein [con 98.7 1.9E-08 6.5E-13 120.6 7.8 94 183-284 175-287 (440)
151 3crv_A XPD/RAD3 related DNA he 98.7 5.8E-08 2E-12 119.9 12.1 131 544-680 2-187 (551)
152 1gm5_A RECG; helicase, replica 98.7 6.8E-09 2.3E-13 131.6 3.8 120 169-291 562-693 (780)
153 4a4z_A Antiviral helicase SKI2 98.6 9.9E-08 3.4E-12 124.9 13.4 133 169-307 322-502 (997)
154 2jlq_A Serine protease subunit 98.6 6.1E-08 2.1E-12 116.7 10.1 96 183-286 186-301 (451)
155 2wv9_A Flavivirin protease NS2 98.6 6.6E-08 2.3E-12 121.1 9.8 96 182-285 407-523 (673)
156 2z83_A Helicase/nucleoside tri 98.6 3.2E-08 1.1E-12 119.4 6.5 105 184-297 189-313 (459)
157 2v6i_A RNA helicase; membrane, 98.5 1E-07 3.5E-12 113.9 8.2 97 184-287 170-282 (431)
158 2whx_A Serine protease/ntpase/ 98.5 6.9E-08 2.4E-12 120.1 6.7 104 183-295 353-476 (618)
159 2xau_A PRE-mRNA-splicing facto 98.5 9.4E-08 3.2E-12 122.0 6.8 110 184-299 302-445 (773)
160 1gku_B Reverse gyrase, TOP-RG; 98.4 1.8E-07 6.2E-12 123.6 8.1 88 168-266 261-352 (1054)
161 4ddu_A Reverse gyrase; topoiso 98.3 6.9E-07 2.3E-11 118.1 9.9 89 168-267 295-388 (1104)
162 3o8b_A HCV NS3 protease/helica 98.3 7.9E-07 2.7E-11 109.7 7.2 101 184-299 395-516 (666)
163 2w00_A HSDR, R.ECOR124I; ATP-b 97.6 0.00015 5.1E-09 94.6 12.2 108 184-295 536-707 (1038)
164 4b3f_X DNA-binding protein smu 97.4 0.0006 2E-08 85.7 13.0 70 542-617 186-256 (646)
165 3upu_A ATP-dependent DNA helic 97.3 0.0015 5.3E-08 78.3 14.6 142 544-708 24-167 (459)
166 2gk6_A Regulator of nonsense t 97.2 0.0022 7.6E-08 80.0 15.1 149 545-708 180-376 (624)
167 3e1s_A Exodeoxyribonuclease V, 97.1 0.0024 8.1E-08 78.5 13.2 132 543-708 187-318 (574)
168 2xzl_A ATP-dependent helicase 97.0 0.0032 1.1E-07 80.4 13.8 149 544-708 359-554 (802)
169 2wjy_A Regulator of nonsense t 97.0 0.0035 1.2E-07 79.9 14.2 150 544-708 355-552 (800)
170 1w36_D RECD, exodeoxyribonucle 96.5 0.0098 3.3E-07 73.8 12.4 145 547-709 151-302 (608)
171 2orw_A Thymidine kinase; TMTK, 96.5 0.0063 2.1E-07 63.1 8.8 106 567-704 6-111 (184)
172 3lfu_A DNA helicase II; SF1 he 96.0 0.02 7E-07 71.8 11.6 68 544-617 8-77 (647)
173 2b8t_A Thymidine kinase; deoxy 95.6 0.027 9.1E-07 60.0 8.6 113 563-704 11-124 (223)
174 2j9r_A Thymidine kinase; TK1, 95.5 0.044 1.5E-06 57.5 9.8 35 568-605 32-66 (214)
175 2o0j_A Terminase, DNA packagin 95.4 0.13 4.6E-06 59.2 14.3 155 544-719 162-325 (385)
176 1xx6_A Thymidine kinase; NESG, 95.3 0.055 1.9E-06 56.1 9.5 122 567-720 11-138 (191)
177 2ipc_A Preprotein translocase 95.2 0.45 1.6E-05 59.6 18.8 123 168-296 426-698 (997)
178 2vl7_A XPD; helicase, unknown 95.2 0.04 1.4E-06 67.4 9.6 91 172-270 370-466 (540)
179 3cpe_A Terminase, DNA packagin 94.8 0.23 7.9E-06 61.3 15.0 147 543-708 161-316 (592)
180 3vkw_A Replicase large subunit 94.7 0.053 1.8E-06 63.4 8.2 108 567-708 164-272 (446)
181 1l8q_A Chromosomal replication 94.6 0.22 7.5E-06 56.3 13.2 100 564-704 37-139 (324)
182 2orv_A Thymidine kinase; TP4A 94.5 0.12 4.1E-06 54.7 9.7 35 568-605 23-57 (234)
183 3ec2_A DNA replication protein 94.0 0.36 1.2E-05 49.2 12.2 45 547-591 16-65 (180)
184 1a5t_A Delta prime, HOLB; zinc 94.0 0.26 8.7E-06 56.1 11.9 44 546-589 3-49 (334)
185 1uaa_A REP helicase, protein ( 93.6 0.2 6.7E-06 63.1 10.9 68 545-618 2-71 (673)
186 3e2i_A Thymidine kinase; Zn-bi 93.3 0.31 1.1E-05 50.9 10.0 35 568-605 32-66 (219)
187 3syl_A Protein CBBX; photosynt 93.0 0.13 4.3E-06 57.8 7.1 39 566-604 69-108 (309)
188 2z4s_A Chromosomal replication 92.4 0.63 2.2E-05 55.0 12.4 103 564-704 130-235 (440)
189 2chg_A Replication factor C sm 92.2 1 3.5E-05 47.0 12.7 24 566-589 40-63 (226)
190 3bos_A Putative DNA replicatio 92.1 0.55 1.9E-05 50.0 10.4 27 563-589 51-77 (242)
191 2w58_A DNAI, primosome compone 91.9 0.6 2E-05 48.5 10.3 34 565-601 55-88 (202)
192 3u61_B DNA polymerase accessor 91.9 0.84 2.9E-05 51.4 12.2 41 666-707 105-147 (324)
193 1w4r_A Thymidine kinase; type 91.5 0.43 1.5E-05 49.2 8.1 34 568-604 24-57 (195)
194 1jbk_A CLPB protein; beta barr 91.3 1.3 4.4E-05 44.9 11.9 27 564-590 43-69 (195)
195 2gno_A DNA polymerase III, gam 91.0 0.65 2.2E-05 51.9 9.8 38 550-587 2-41 (305)
196 3n70_A Transport activator; si 90.8 0.26 8.9E-06 48.5 5.6 25 561-585 21-45 (145)
197 1sxj_D Activator 1 41 kDa subu 90.7 0.49 1.7E-05 54.0 8.7 25 565-589 59-83 (353)
198 3co5_A Putative two-component 90.5 0.11 3.9E-06 51.0 2.7 23 562-584 25-47 (143)
199 2p65_A Hypothetical protein PF 90.0 0.65 2.2E-05 47.1 8.1 26 564-589 43-68 (187)
200 4b4t_J 26S protease regulatory 90.0 0.89 3E-05 52.5 9.8 45 563-613 181-225 (405)
201 1njg_A DNA polymerase III subu 89.7 1.8 6.2E-05 45.7 11.8 43 547-589 28-70 (250)
202 3h4m_A Proteasome-activating n 89.7 0.4 1.4E-05 52.9 6.6 37 563-605 50-86 (285)
203 2v1u_A Cell division control p 89.6 0.69 2.4E-05 53.3 8.9 44 547-590 24-70 (387)
204 4a15_A XPD helicase, ATP-depen 89.5 0.92 3.1E-05 56.1 10.2 113 172-290 434-579 (620)
205 2v0f_A Chromodomain-helicase-D 89.2 0.22 7.5E-06 43.3 3.0 48 433-480 8-55 (87)
206 2qby_B CDC6 homolog 3, cell di 89.2 0.81 2.8E-05 52.8 9.0 45 547-591 25-72 (384)
207 2bjv_A PSP operon transcriptio 89.0 1.6 5.6E-05 47.4 10.9 42 561-605 26-67 (265)
208 1iqp_A RFCS; clamp loader, ext 88.9 2.4 8.3E-05 47.4 12.5 41 548-589 31-71 (327)
209 3vfd_A Spastin; ATPase, microt 88.4 0.83 2.8E-05 53.0 8.4 41 564-610 148-188 (389)
210 1ofh_A ATP-dependent HSL prote 88.1 1.4 4.9E-05 48.9 9.9 25 564-588 50-74 (310)
211 1xwi_A SKD1 protein; VPS4B, AA 87.2 0.95 3.3E-05 51.0 7.7 38 565-607 46-83 (322)
212 3te6_A Regulatory protein SIR3 87.0 3.9 0.00013 45.7 12.3 45 547-591 25-72 (318)
213 1sxj_B Activator 1 37 kDa subu 87.0 1.3 4.5E-05 49.5 8.7 24 566-589 44-67 (323)
214 3eie_A Vacuolar protein sortin 86.8 0.68 2.3E-05 52.3 6.2 24 565-588 52-75 (322)
215 2qp9_X Vacuolar protein sortin 86.6 0.47 1.6E-05 54.4 4.7 24 565-588 85-108 (355)
216 2kjq_A DNAA-related protein; s 86.5 1.8 6.3E-05 42.5 8.4 27 563-589 35-61 (149)
217 2qz4_A Paraplegin; AAA+, SPG7, 86.2 1.4 4.8E-05 47.6 8.2 37 564-606 39-75 (262)
218 3uk6_A RUVB-like 2; hexameric 85.4 1.3 4.4E-05 50.8 7.7 53 547-603 49-105 (368)
219 3cf0_A Transitional endoplasmi 85.2 1.3 4.3E-05 49.5 7.2 26 563-588 48-73 (301)
220 1ojl_A Transcriptional regulat 84.6 2.4 8.2E-05 47.2 9.2 42 562-606 23-64 (304)
221 2r2a_A Uncharacterized protein 84.5 0.77 2.6E-05 47.8 4.7 21 567-587 8-28 (199)
222 1jr3_A DNA polymerase III subu 84.5 5.8 0.0002 45.2 12.8 42 547-588 21-62 (373)
223 4b4t_H 26S protease regulatory 84.2 2.2 7.6E-05 49.9 8.8 43 563-611 242-284 (467)
224 4b4t_L 26S protease subunit RP 84.1 1.7 5.9E-05 50.8 7.9 42 564-611 215-256 (437)
225 3hjh_A Transcription-repair-co 84.0 2.8 9.5E-05 49.9 9.8 85 567-658 17-116 (483)
226 1fnn_A CDC6P, cell division co 83.8 6.6 0.00023 44.9 12.9 23 566-588 46-68 (389)
227 2zan_A Vacuolar protein sortin 83.7 1.5 5.1E-05 51.9 7.3 41 565-610 168-208 (444)
228 2q6t_A DNAB replication FORK h 83.4 4.1 0.00014 48.1 11.0 61 552-614 188-248 (444)
229 1sxj_C Activator 1 40 kDa subu 83.1 3 0.0001 47.2 9.4 23 567-589 49-71 (340)
230 3t15_A Ribulose bisphosphate c 82.9 2 7E-05 47.5 7.6 35 565-605 37-71 (293)
231 2r6a_A DNAB helicase, replicat 82.5 4.4 0.00015 47.9 10.8 60 552-613 191-250 (454)
232 4b4t_I 26S protease regulatory 82.1 1.8 6.1E-05 50.2 6.8 44 564-613 216-259 (437)
233 2cka_A Chromodomain-helicase-D 82.0 0.68 2.3E-05 41.0 2.5 41 439-479 41-81 (95)
234 3hu3_A Transitional endoplasmi 82.0 0.75 2.6E-05 55.1 3.8 25 563-587 237-261 (489)
235 1sxj_E Activator 1 40 kDa subu 81.5 5 0.00017 45.5 10.5 40 550-589 19-61 (354)
236 1sxj_A Activator 1 95 kDa subu 81.3 4 0.00014 49.2 10.0 24 565-588 78-101 (516)
237 2qby_A CDC6 homolog 1, cell di 81.3 2.2 7.5E-05 48.9 7.4 44 547-590 25-71 (386)
238 4b4t_K 26S protease regulatory 81.1 1.3 4.4E-05 51.7 5.3 41 564-610 206-246 (428)
239 2r8r_A Sensor protein; KDPD, P 80.6 1.6 5.6E-05 46.0 5.3 28 564-591 6-33 (228)
240 2chq_A Replication factor C sm 80.5 0.96 3.3E-05 50.6 3.8 24 566-589 40-63 (319)
241 3d8b_A Fidgetin-like protein 1 80.3 1.7 5.9E-05 49.7 6.0 37 564-606 117-153 (357)
242 2cvh_A DNA repair and recombin 79.9 8.4 0.00029 40.0 10.9 54 553-612 8-64 (220)
243 3k1j_A LON protease, ATP-depen 79.6 3.8 0.00013 50.4 9.2 49 561-609 57-116 (604)
244 1d2n_A N-ethylmaleimide-sensit 79.3 5 0.00017 43.6 9.2 23 565-587 65-87 (272)
245 2dl6_A Chromodomain-helicase-D 78.9 0.84 2.9E-05 39.4 2.0 41 439-479 15-55 (83)
246 3hws_A ATP-dependent CLP prote 78.9 2.3 8E-05 48.6 6.6 34 564-603 51-84 (363)
247 2ce7_A Cell division protein F 78.8 4.8 0.00016 47.7 9.3 35 565-605 50-84 (476)
248 1r6b_X CLPA protein; AAA+, N-t 77.9 6.2 0.00021 50.1 10.7 27 563-589 206-232 (758)
249 3kl4_A SRP54, signal recogniti 77.0 7.7 0.00026 45.3 10.1 36 567-604 100-135 (433)
250 3dm5_A SRP54, signal recogniti 75.7 8 0.00027 45.2 9.8 32 568-602 104-135 (443)
251 3pvs_A Replication-associated 74.0 5.3 0.00018 47.1 7.8 22 566-587 52-73 (447)
252 2w0m_A SSO2452; RECA, SSPF, un 74.0 22 0.00074 37.0 12.2 48 562-612 21-68 (235)
253 1um8_A ATP-dependent CLP prote 73.5 5.4 0.00019 45.7 7.7 25 564-588 72-96 (376)
254 3b9p_A CG5977-PA, isoform A; A 72.3 2.7 9.1E-05 46.5 4.6 24 564-587 54-77 (297)
255 2zpa_A Uncharacterized protein 72.2 6.9 0.00024 48.1 8.4 116 544-706 174-289 (671)
256 3bgw_A DNAB-like replicative h 71.9 8.8 0.0003 45.1 9.1 58 552-612 185-242 (444)
257 3crv_A XPD/RAD3 related DNA he 71.0 12 0.00041 45.4 10.3 91 885-985 390-487 (551)
258 2ckc_A Chromodomain-helicase-D 70.5 2 7E-05 35.9 2.1 42 438-479 21-62 (80)
259 3bh0_A DNAB-like replicative h 70.3 9.1 0.00031 42.7 8.4 61 552-615 56-116 (315)
260 3pfi_A Holliday junction ATP-d 70.1 22 0.00074 39.8 11.7 23 565-587 56-78 (338)
261 1qvr_A CLPB protein; coiled co 70.1 12 0.0004 48.2 10.4 27 564-590 191-217 (854)
262 1w5s_A Origin recognition comp 69.9 9.9 0.00034 43.9 9.0 43 547-589 27-77 (412)
263 1pjr_A PCRA; DNA repair, DNA r 67.8 6.4 0.00022 49.6 7.1 67 545-617 11-79 (724)
264 2px0_A Flagellar biosynthesis 65.6 11 0.00039 41.5 7.8 33 568-602 109-141 (296)
265 3pxi_A Negative regulator of g 64.9 9.1 0.00031 48.5 7.8 24 566-589 523-546 (758)
266 1xp8_A RECA protein, recombina 63.0 14 0.0005 42.0 8.2 57 552-611 60-118 (366)
267 2qen_A Walker-type ATPase; unk 62.5 15 0.00052 41.0 8.4 36 547-585 17-52 (350)
268 2zr9_A Protein RECA, recombina 62.2 14 0.00049 41.7 8.0 56 552-610 47-104 (349)
269 4dzz_A Plasmid partitioning pr 58.9 62 0.0021 32.7 11.8 112 570-720 8-121 (206)
270 3cf2_A TER ATPase, transitiona 55.9 5.4 0.00019 50.3 3.2 41 564-610 511-551 (806)
271 2qgz_A Helicase loader, putati 55.0 14 0.00049 40.9 6.2 26 564-589 152-177 (308)
272 2fna_A Conserved hypothetical 54.7 54 0.0018 36.4 11.3 36 547-587 18-53 (357)
273 4b4t_M 26S protease regulatory 53.8 4.7 0.00016 47.1 2.0 42 564-611 215-256 (434)
274 1nlf_A Regulatory protein REPA 53.6 77 0.0026 34.1 11.9 53 563-616 29-89 (279)
275 2dhr_A FTSH; AAA+ protein, hex 51.3 62 0.0021 38.4 11.2 22 566-587 66-87 (499)
276 1n0w_A DNA repair protein RAD5 51.2 90 0.0031 32.4 11.7 54 552-605 11-68 (243)
277 3io5_A Recombination and repai 51.1 27 0.00092 38.8 7.3 41 567-608 31-71 (333)
278 2zts_A Putative uncharacterize 50.9 28 0.00097 36.6 7.6 51 564-616 30-80 (251)
279 3u4q_A ATP-dependent helicase/ 50.8 15 0.00052 49.2 6.5 59 543-607 8-69 (1232)
280 1r6b_X CLPA protein; AAA+, N-t 49.9 18 0.00061 45.8 6.7 23 566-588 490-512 (758)
281 3cf2_A TER ATPase, transitiona 48.7 15 0.00051 46.3 5.5 24 564-587 238-261 (806)
282 3u4q_B ATP-dependent helicase/ 47.8 15 0.00053 48.9 5.9 51 568-619 6-56 (1166)
283 2z43_A DNA repair and recombin 47.2 38 0.0013 37.7 8.2 55 552-606 94-152 (324)
284 3sxu_A DNA polymerase III subu 46.4 75 0.0026 30.9 9.0 81 871-970 22-106 (150)
285 3cmu_A Protein RECA, recombina 46.1 44 0.0015 46.4 9.7 52 562-618 1425-1476(2050)
286 2c9o_A RUVB-like 1; hexameric 44.1 14 0.00047 43.7 4.0 40 565-608 64-103 (456)
287 3hr8_A Protein RECA; alpha and 43.2 49 0.0017 37.4 8.2 40 567-609 64-103 (356)
288 3pxg_A Negative regulator of g 43.0 58 0.002 38.3 9.3 41 548-589 186-226 (468)
289 3qxc_A Dethiobiotin synthetase 42.7 14 0.00048 39.4 3.4 25 568-592 26-50 (242)
290 3sxu_A DNA polymerase III subu 42.5 1.4E+02 0.0046 29.1 10.2 41 168-208 22-62 (150)
291 2xxa_A Signal recognition part 42.3 49 0.0017 38.5 8.3 34 568-603 104-137 (433)
292 4a1f_A DNAB helicase, replicat 42.2 44 0.0015 37.5 7.5 59 552-613 34-92 (338)
293 3of5_A Dethiobiotin synthetase 41.7 14 0.0005 38.9 3.3 25 568-592 9-33 (228)
294 1tue_A Replication protein E1; 41.4 22 0.00076 36.8 4.5 23 566-588 60-82 (212)
295 1u6t_A SH3 domain-binding glut 40.7 33 0.0011 32.1 5.2 45 188-232 2-53 (121)
296 1u94_A RECA protein, recombina 40.5 37 0.0013 38.4 6.7 53 552-607 49-103 (356)
297 3fgn_A Dethiobiotin synthetase 39.6 16 0.00056 39.1 3.4 25 568-592 31-55 (251)
298 1ls1_A Signal recognition part 39.6 55 0.0019 35.8 7.8 32 569-603 103-134 (295)
299 3cg4_A Response regulator rece 38.7 1.3E+02 0.0043 27.8 9.5 94 185-282 31-127 (142)
300 1u6t_A SH3 domain-binding glut 38.6 39 0.0013 31.6 5.4 45 891-935 2-53 (121)
301 3cg4_A Response regulator rece 38.6 1.7E+02 0.0059 26.8 10.5 94 888-985 31-127 (142)
302 4e7p_A Response regulator; DNA 38.5 76 0.0026 30.0 7.9 83 622-705 22-104 (150)
303 2dr3_A UPF0273 protein PH0284; 38.3 45 0.0015 34.9 6.7 50 563-615 22-71 (247)
304 3nhm_A Response regulator; pro 38.2 1.3E+02 0.0043 27.4 9.3 97 184-284 26-124 (133)
305 3eul_A Possible nitrate/nitrit 37.8 42 0.0014 32.0 5.8 42 663-705 58-99 (152)
306 3eqz_A Response regulator; str 37.7 93 0.0032 28.4 8.2 96 888-988 27-128 (135)
307 1t6n_A Probable ATP-dependent 37.6 1.8E+02 0.006 29.6 11.1 93 166-263 60-165 (220)
308 3lte_A Response regulator; str 37.4 72 0.0024 29.2 7.3 18 968-985 108-125 (132)
309 1lv7_A FTSH; alpha/beta domain 36.7 52 0.0018 34.9 6.9 36 564-605 45-80 (257)
310 3eod_A Protein HNR; response r 36.6 99 0.0034 28.1 8.2 43 662-705 47-89 (130)
311 2l82_A Designed protein OR32; 36.5 99 0.0034 27.5 7.1 47 188-234 5-51 (162)
312 2r44_A Uncharacterized protein 36.1 17 0.00058 40.6 3.0 26 563-588 45-70 (331)
313 3nhm_A Response regulator; pro 35.8 1.5E+02 0.0052 26.8 9.4 95 887-987 26-124 (133)
314 3kto_A Response regulator rece 35.4 1.1E+02 0.0037 28.2 8.3 82 621-705 7-90 (136)
315 3kht_A Response regulator; PSI 35.3 74 0.0025 29.7 7.2 44 661-705 46-91 (144)
316 3i42_A Response regulator rece 35.3 62 0.0021 29.4 6.4 104 876-988 18-125 (127)
317 2l82_A Designed protein OR32; 35.2 1.1E+02 0.0039 27.1 7.3 48 891-938 5-52 (162)
318 1k68_A Phytochrome response re 35.1 96 0.0033 28.4 7.9 40 665-705 54-95 (140)
319 3m6a_A ATP-dependent protease 34.9 71 0.0024 38.4 8.4 25 564-588 108-132 (543)
320 3fe2_A Probable ATP-dependent 34.8 1.9E+02 0.0065 30.0 11.0 91 166-262 75-182 (242)
321 2i1q_A DNA repair and recombin 34.4 70 0.0024 35.4 7.7 36 552-587 85-121 (322)
322 2j48_A Two-component sensor ki 33.7 42 0.0014 29.8 4.8 89 887-983 24-116 (119)
323 3ber_A Probable ATP-dependent 33.2 2.2E+02 0.0075 29.8 11.2 91 166-262 89-192 (249)
324 4fcw_A Chaperone protein CLPB; 33.1 46 0.0016 36.4 5.9 34 566-602 49-82 (311)
325 2j48_A Two-component sensor ki 32.9 40 0.0014 30.0 4.5 91 184-280 24-116 (119)
326 2oxc_A Probable ATP-dependent 32.6 1.5E+02 0.0051 30.6 9.6 90 166-262 70-172 (230)
327 2wul_A Glutaredoxin related pr 32.5 1.5E+02 0.005 27.5 8.2 63 186-249 20-89 (118)
328 3cmu_A Protein RECA, recombina 32.0 61 0.0021 45.0 7.6 57 552-611 718-776 (2050)
329 3grc_A Sensor protein, kinase; 32.0 2.3E+02 0.0079 25.9 10.1 97 887-987 29-129 (140)
330 3g5j_A Putative ATP/GTP bindin 31.8 55 0.0019 30.6 5.5 50 170-220 74-125 (134)
331 2ffh_A Protein (FFH); SRP54, s 31.4 76 0.0026 36.7 7.5 33 568-603 102-134 (425)
332 2qxy_A Response regulator; reg 31.4 93 0.0032 28.8 7.1 79 622-705 6-85 (142)
333 3cwq_A Para family chromosome 31.2 65 0.0022 33.0 6.3 42 568-613 5-48 (209)
334 3gx8_A Monothiol glutaredoxin- 30.9 1.5E+02 0.0052 27.4 8.2 58 185-244 15-81 (121)
335 3ipz_A Monothiol glutaredoxin- 30.8 1.3E+02 0.0044 27.1 7.6 67 176-245 9-81 (109)
336 1ypw_A Transitional endoplasmi 30.3 38 0.0013 43.0 5.0 23 563-585 237-259 (806)
337 3eqz_A Response regulator; str 30.0 1E+02 0.0035 28.1 7.1 76 210-285 47-128 (135)
338 3a10_A Response regulator; pho 30.0 1.4E+02 0.0049 26.2 7.9 92 184-280 24-115 (116)
339 3lua_A Response regulator rece 30.0 1E+02 0.0035 28.5 7.1 80 622-705 6-91 (140)
340 3zyw_A Glutaredoxin-3; metal b 29.5 1.3E+02 0.0044 27.3 7.4 59 184-244 14-78 (111)
341 1zu4_A FTSY; GTPase, signal re 29.4 1.8E+02 0.006 32.2 9.8 32 568-602 109-140 (320)
342 3gk5_A Uncharacterized rhodane 29.3 63 0.0021 29.2 5.1 45 175-220 46-90 (108)
343 3i42_A Response regulator rece 28.9 65 0.0022 29.3 5.3 106 173-285 18-125 (127)
344 2pl3_A Probable ATP-dependent 28.9 2.1E+02 0.0073 29.4 10.1 90 166-262 71-177 (236)
345 2wem_A Glutaredoxin-related pr 28.8 1.8E+02 0.006 26.9 8.2 59 186-246 20-85 (118)
346 3n53_A Response regulator rece 28.6 3E+02 0.01 25.0 10.3 93 186-282 27-122 (140)
347 3a10_A Response regulator; pho 28.5 1.7E+02 0.0058 25.7 8.1 90 887-983 24-115 (116)
348 3g5j_A Putative ATP/GTP bindin 28.4 56 0.0019 30.5 4.9 52 873-924 74-126 (134)
349 3hv2_A Response regulator/HD d 28.0 1.2E+02 0.0041 28.6 7.3 43 662-705 54-96 (153)
350 3gk5_A Uncharacterized rhodane 27.6 58 0.002 29.4 4.6 45 878-923 46-90 (108)
351 2rdm_A Response regulator rece 27.6 1.9E+02 0.0064 26.1 8.5 96 887-988 28-126 (132)
352 2rjn_A Response regulator rece 27.5 1.2E+02 0.0043 28.5 7.4 82 621-705 8-89 (154)
353 3snk_A Response regulator CHEY 27.2 1.1E+02 0.0037 28.2 6.7 81 622-705 16-97 (135)
354 3iuy_A Probable ATP-dependent 27.1 1.7E+02 0.0057 30.0 8.8 91 166-262 66-173 (228)
355 1tmy_A CHEY protein, TMY; chem 27.0 1.1E+02 0.0037 27.3 6.5 41 664-705 45-85 (120)
356 3hzh_A Chemotaxis response reg 26.9 97 0.0033 29.5 6.5 39 666-705 83-121 (157)
357 2gxq_A Heat resistant RNA depe 26.6 2.5E+02 0.0085 28.0 9.9 90 869-965 47-150 (207)
358 3lte_A Response regulator; str 26.4 69 0.0024 29.3 5.1 26 186-211 7-32 (132)
359 2rjn_A Response regulator rece 26.4 2E+02 0.0068 27.0 8.7 29 888-916 7-35 (154)
360 1u0j_A DNA replication protein 25.4 38 0.0013 36.5 3.2 22 566-587 106-127 (267)
361 2r62_A Cell division protease 25.3 42 0.0014 35.9 3.7 25 564-588 44-68 (268)
362 2qr3_A Two-component system re 25.2 1.3E+02 0.0046 27.5 7.0 83 621-705 4-90 (140)
363 1byi_A Dethiobiotin synthase; 25.1 68 0.0023 33.0 5.2 33 568-603 6-38 (224)
364 3dmn_A Putative DNA helicase; 24.9 2.2E+02 0.0076 28.0 8.8 77 876-970 49-125 (174)
365 3nbx_X ATPase RAVA; AAA+ ATPas 24.4 35 0.0012 40.6 3.0 26 562-587 39-64 (500)
366 2oap_1 GSPE-2, type II secreti 24.3 64 0.0022 38.4 5.3 39 544-585 243-281 (511)
367 3jte_A Response regulator rece 24.1 2.4E+02 0.0081 25.9 8.6 84 621-705 4-87 (143)
368 3kto_A Response regulator rece 24.0 1E+02 0.0034 28.5 5.8 26 890-915 8-33 (136)
369 2lqo_A Putative glutaredoxin R 23.9 1.3E+02 0.0046 26.3 6.0 57 186-243 4-61 (92)
370 3f6c_A Positive transcription 23.8 1.4E+02 0.0047 27.2 6.7 85 622-710 3-89 (134)
371 3ly5_A ATP-dependent RNA helic 23.8 4.5E+02 0.015 27.6 11.6 91 166-262 100-207 (262)
372 3cmw_A Protein RECA, recombina 23.8 95 0.0033 42.5 7.2 54 553-609 719-774 (1706)
373 1hqc_A RUVB; extended AAA-ATPa 23.4 99 0.0034 33.8 6.5 25 564-588 38-62 (324)
374 1dbw_A Transcriptional regulat 23.4 2E+02 0.0067 25.8 7.6 17 968-984 104-120 (126)
375 3rqi_A Response regulator prot 23.3 1.3E+02 0.0044 29.7 6.7 43 662-705 47-89 (184)
376 1t1v_A SH3BGRL3, SH3 domain-bi 23.0 1.1E+02 0.0037 26.6 5.4 58 187-244 3-67 (93)
377 4ag6_A VIRB4 ATPase, type IV s 23.0 1.2E+02 0.004 34.6 7.1 47 563-612 34-80 (392)
378 2b4a_A BH3024; flavodoxin-like 22.9 3E+02 0.01 25.0 9.0 98 876-984 30-130 (138)
379 3ilh_A Two component response 22.9 1.8E+02 0.0062 26.7 7.5 40 665-705 59-102 (146)
380 1qkk_A DCTD, C4-dicarboxylate 22.8 1.5E+02 0.0053 27.8 7.0 81 622-705 5-85 (155)
381 2yan_A Glutaredoxin-3; oxidore 22.6 1.8E+02 0.0062 25.7 6.9 65 177-244 9-79 (105)
382 1qkk_A DCTD, C4-dicarboxylate 22.5 1.3E+02 0.0045 28.3 6.4 28 889-916 4-31 (155)
383 1q57_A DNA primase/helicase; d 22.3 63 0.0022 38.4 4.7 58 554-613 232-289 (503)
384 3grc_A Sensor protein, kinase; 22.3 2.5E+02 0.0086 25.6 8.3 97 184-284 29-129 (140)
385 2iut_A DNA translocase FTSK; n 22.2 80 0.0027 38.0 5.5 42 564-605 214-256 (574)
386 2j37_W Signal recognition part 22.2 1.9E+02 0.0065 34.2 8.7 33 568-603 105-137 (504)
387 3ipz_A Monothiol glutaredoxin- 22.1 1.4E+02 0.0047 27.0 6.0 49 888-936 17-71 (109)
388 3hix_A ALR3790 protein; rhodan 22.0 1.1E+02 0.0037 27.4 5.3 38 183-220 50-88 (106)
389 3heb_A Response regulator rece 22.0 1.7E+02 0.0058 27.4 7.1 41 664-705 57-99 (152)
390 3cnb_A DNA-binding response re 21.6 3.8E+02 0.013 24.3 9.5 95 887-987 32-132 (143)
391 3dmn_A Putative DNA helicase; 21.4 4.5E+02 0.015 25.7 10.3 78 172-267 48-125 (174)
392 1yio_A Response regulatory pro 21.1 3.2E+02 0.011 27.1 9.4 86 622-710 6-91 (208)
393 3hdg_A Uncharacterized protein 21.0 2E+02 0.0067 26.3 7.2 93 887-985 30-125 (137)
394 3lda_A DNA repair protein RAD5 20.8 4.4E+02 0.015 29.9 11.3 40 567-606 181-223 (400)
395 1qde_A EIF4A, translation init 20.7 1.9E+02 0.0066 29.4 7.7 89 869-965 60-161 (224)
396 4akg_A Glutathione S-transfera 20.5 1E+02 0.0035 44.4 6.8 62 545-606 904-965 (2695)
397 2c95_A Adenylate kinase 1; tra 20.5 73 0.0025 31.8 4.2 26 563-588 8-33 (196)
398 3trf_A Shikimate kinase, SK; a 20.4 62 0.0021 32.1 3.6 24 565-588 6-29 (185)
399 1dbw_A Transcriptional regulat 20.1 1.3E+02 0.0045 27.1 5.6 18 264-281 103-120 (126)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-79 Score=790.56 Aligned_cols=519 Identities=42% Similarity=0.729 Sum_probs=422.6
Q ss_pred ccccccCcccccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHH
Q psy7773 532 EKVTEQASIMVNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWV 611 (1281)
Q Consensus 532 ~~~~~~p~~~~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~ 611 (1281)
..+..+|+...+++|||||++||+||+..+.++.||||||+||+|||+|+|+++.+++......+|+|||||.+++.||.
T Consensus 223 ~~~~~~p~~~~~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~ 302 (800)
T 3mwy_W 223 EKLSVQPPFIKGGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWL 302 (800)
T ss_dssp CCCSSCCTTCCSSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHH
T ss_pred cccccCCCccCCCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHH
Confidence 44567888888999999999999999999999999999999999999999999999987778889999999999999999
Q ss_pred HHHHHHCCCCcEEEEeCCHHHHHHHHhh----------hccCCccEEEechHHHhhcccccccCceeEEEEeCCcccccc
Q psy7773 612 LEFEKWAPSANVVAYKGSPLARRALQGR----------MKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNH 681 (1281)
Q Consensus 612 ~E~~~~~p~~~~~~~~g~~~~r~~~~~~----------~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~ 681 (1281)
.||.+|+|++.+++|+|....+..+... .....++|+||||+++.++...+..+.|++|||||||++||.
T Consensus 303 ~E~~~~~p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~ 382 (800)
T 3mwy_W 303 DTFEKWAPDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNA 382 (800)
T ss_dssp HHHHHHSTTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCS
T ss_pred HHHHHHCCCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCc
Confidence 9999999999999999998877665432 234678999999999999999999999999999999999999
Q ss_pred chHHHHHHHhhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHH
Q psy7773 682 HCKLTQTLNTFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLH 761 (1281)
Q Consensus 682 ~s~~~~~l~~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~ 761 (1281)
.++.++++..+ ++.+||+|||||++|++.|||++++||.|+.|.....|.-.. ........+..|+
T Consensus 383 ~s~~~~~l~~l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~-------------~~~~~~~~~~~L~ 448 (800)
T 3mwy_W 383 ESSLYESLNSF-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFEN-------------QDEEQEEYIHDLH 448 (800)
T ss_dssp SSHHHHHHTTS-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------C-------------CTTHHHHHHHHHH
T ss_pred hhHHHHHHHHh-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccc-------------cchhHHHHHHHHH
Confidence 99999999876 899999999999999999999999999999998766553111 1112334578899
Q ss_pred HhhhHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCc
Q psy7773 762 KVLRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHP 841 (1281)
Q Consensus 762 ~~l~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp 841 (1281)
.+++|+++||++.++...||++.+.++.|+|++.|+.+|..+........... .......+++.++.||++|+||
T Consensus 449 ~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~-----~~~~~~~~l~~l~~Lrk~~~hp 523 (800)
T 3mwy_W 449 RRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAG-----AKGGHFSLLNIMNELKKASNHP 523 (800)
T ss_dssp HTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC---------------CTHHHHHHHHHHHHHCG
T ss_pred HHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhc-----cccchhhHHHHHHHHHHHhcCh
Confidence 99999999999999999999999999999999999999999887654433221 1123345889999999999999
Q ss_pred cchhhhHHHHHhhhcCCCc--cccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEe
Q psy7773 842 FMFQNIEEKYCQHIGQNNT--VVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLD 919 (1281)
Q Consensus 842 ~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~ 919 (1281)
+++..........++.... ......++..|+|+.+|..+|..+...|+||||||+++.++++|+.+|...|+++++++
T Consensus 524 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~ 603 (800)
T 3mwy_W 524 YLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLD 603 (800)
T ss_dssp GGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEES
T ss_pred hhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEe
Confidence 9998766544322211100 00012345679999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeC
Q psy7773 920 GTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITV 999 (1281)
Q Consensus 920 G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~ 999 (1281)
|+++..+|+.+++.|++++++++|||+||++||+||||+.||+||+||++|||..+.||+||+||+||+++|+||+|++.
T Consensus 604 G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~ 683 (800)
T 3mwy_W 604 GTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSK 683 (800)
T ss_dssp TTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEET
T ss_pred CCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecC
Confidence 99999999999999999888888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCcCCCCCC---hhhHHHHHHHHhccCCchh----hcCCCCCHHHHHHHHhhCH
Q psy7773 1000 NSVEERILAAARYKLNMDEKVIQAGMFDQKST---GSERHEFLQTILHQDDEEE----EENEVPDDETVNQLIARTE 1069 (1281)
Q Consensus 1000 ~tiEe~I~~~~~~K~~l~~~vi~~g~~~~~~~---~~~~~~~l~~il~~~~~~~----~~~~~~~~~~~~~~~~~~~ 1069 (1281)
+|+|++|++++..|+.+.+.+++.|..+.... .......+.+||..+.... +......+++|+.+|++++
T Consensus 684 ~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 760 (800)
T 3mwy_W 684 DTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAGNMFTATDNQKKLEDLNLDDVLNHAE 760 (800)
T ss_dssp TSHHHHHHHHHHHHTTSCC----------------CCCCHHHHHHHHSSCSSSSCCSHHHHHHHHTCCHHHHHHHCE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHccCcccccccccccCCCHHHHHHHHHcchHhhhhccCccccccccCHHHHHHhhh
Confidence 99999999999999999999999887664321 1223456778887665211 1111122345777777665
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.6e-72 Score=708.49 Aligned_cols=497 Identities=29% Similarity=0.463 Sum_probs=403.6
Q ss_pred ccCcccHHHHHHHHHHHHhh-----cCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCC----CCCEEEEeCCccHHHHHH
Q psy7773 542 VNGKLKEYQIKGLEWMVSLY-----NNNLNGILADEMGLGKTVQTIALLTYLMEKKKN----LGPYLVIVPLSTLSNWVL 612 (1281)
Q Consensus 542 ~~~~L~~yQ~~gv~~l~~~~-----~~~~~gILademGlGKTi~ai~ll~~l~~~~~~----~~~~LIV~P~s~l~~W~~ 612 (1281)
+.+.|||||.+|+.||+..+ .++.||||||+||+|||+|+|+++.+++..... .+++|||||.+++.||..
T Consensus 52 l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~qW~~ 131 (644)
T 1z3i_X 52 LSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYN 131 (644)
T ss_dssp HHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHHHHHH
Confidence 46789999999999999865 456789999999999999999999998865432 356999999999999999
Q ss_pred HHHHHCCC-CcEEEEeC-CHHHHH-HHHhhhc----cCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHH
Q psy7773 613 EFEKWAPS-ANVVAYKG-SPLARR-ALQGRMK----NSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKL 685 (1281)
Q Consensus 613 E~~~~~p~-~~~~~~~g-~~~~r~-~~~~~~~----~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~ 685 (1281)
||.+|+|. +.++.+.| +...+. .+..... ...++|+||||+++..+...+....|++|||||||++||..++.
T Consensus 132 E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~~~ 211 (644)
T 1z3i_X 132 EVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQT 211 (644)
T ss_dssp HHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHHH
T ss_pred HHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCChhhHH
Confidence 99999875 55555554 443322 2222211 23589999999999999888989999999999999999999999
Q ss_pred HHHHHhhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCC--HHHHHHHHHHHHHh
Q psy7773 686 TQTLNTFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELN--EEETILIIRRLHKV 763 (1281)
Q Consensus 686 ~~~l~~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~--~~~~~~~~~~L~~~ 763 (1281)
++++..+ ++.+||+|||||++|++.|||++++|+.|+.+++...|..+|..|+.......... .......+..|+.+
T Consensus 212 ~~al~~l-~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~ 290 (644)
T 1z3i_X 212 YLALNSM-NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISI 290 (644)
T ss_dssp HHHHHHH-CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhc-ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHH
Confidence 9999886 89999999999999999999999999999999999999999988875332221111 22334457789999
Q ss_pred hhHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccc
Q psy7773 764 LRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFM 843 (1281)
Q Consensus 764 l~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l 843 (1281)
+.||++||++.++...||++.+.++.|+||+.|+.+|+.+.......... .........+..++.||++|+||.+
T Consensus 291 l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~-----~~g~~~~~~l~~l~~Lrk~c~hp~l 365 (644)
T 1z3i_X 291 VNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESL-----QTGKISVSSLSSITSLKKLCNHPAL 365 (644)
T ss_dssp HHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSS-----CTTCCCHHHHHHHHHHHHHHHCTHH
T ss_pred HHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHH-----hcCccchhHHHHHHHHHHHhCCHHH
Confidence 99999999999999999999999999999999999999987654322111 1112335567889999999999998
Q ss_pred hhhhHHHHHhhhcC-----CCccccCCccccccchHHHHHHHhhhhhh-cCCeEEEEechHHHHHHHHHHHHHCCCcEEE
Q psy7773 844 FQNIEEKYCQHIGQ-----NNTVVSGPDIYRTSGKFELLDRILPKFKE-TKHRVLMFCQMTQLMTILEDYFIWRDFSYLR 917 (1281)
Q Consensus 844 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~s~K~~~L~~lL~~~~~-~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~ 917 (1281)
+............. .............|+|+.+|..+|..+.. .++|+||||+++.++++|+.+|...|+++++
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~ 445 (644)
T 1z3i_X 366 IYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVR 445 (644)
T ss_dssp HHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEE
Confidence 75321110000000 00000111223569999999999998864 6899999999999999999999999999999
Q ss_pred EeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEE
Q psy7773 918 LDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLI 997 (1281)
Q Consensus 918 l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli 997 (1281)
++|+++..+|..+++.|++++...++||+||++||+||||+.|++||+||++|||..+.||+||+||+||+++|+||+|+
T Consensus 446 l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv 525 (644)
T 1z3i_X 446 LDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLL 525 (644)
T ss_dssp ECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEE
T ss_pred EeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEE
Confidence 99999999999999999998777788999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCCChhhHHHHHHHHhccCC
Q psy7773 998 TVNSVEERILAAARYKLNMDEKVIQAGMFDQKSTGSERHEFLQTILHQDD 1047 (1281)
Q Consensus 998 ~~~tiEe~I~~~~~~K~~l~~~vi~~g~~~~~~~~~~~~~~l~~il~~~~ 1047 (1281)
+.+|+|++|++++..|..+++.|++.+..... .-..+.|..++..++
T Consensus 526 ~~~tiEe~i~~~~~~K~~l~~~v~~~~~~~~~---~~~~~~l~~Lf~~~~ 572 (644)
T 1z3i_X 526 STGTIEEKILQRQAHKKALSSCVVDEEQDVER---HFSLGELRELFSLNE 572 (644)
T ss_dssp ETTSHHHHHHHHHHHHHHTSCCCCSCSSSCCC---SSCHHHHHHHTCCCS
T ss_pred ECCCHHHHHHHHHHHHHHHHHHHhcCcchhhc---CCCHHHHHHHhCCCC
Confidence 99999999999999999999999876543221 112344566666544
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.5e-66 Score=642.56 Aligned_cols=443 Identities=32% Similarity=0.576 Sum_probs=384.3
Q ss_pred ccccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCC
Q psy7773 540 IMVNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAP 619 (1281)
Q Consensus 540 ~~~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p 619 (1281)
..+..+|+|||.+|+.||...+..+.+|||||+||+|||+++++++..+.. .+..+++|||||.+++.||..||.+|+|
T Consensus 32 ~~~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~-~~~~~~~LIv~P~~l~~qw~~e~~~~~~ 110 (500)
T 1z63_A 32 YNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKK-ENELTPSLVICPLSVLKNWEEELSKFAP 110 (500)
T ss_dssp CSCSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHH-TTCCSSEEEEECSTTHHHHHHHHHHHCT
T ss_pred hhhhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHh-cCCCCCEEEEccHHHHHHHHHHHHHHCC
Confidence 345779999999999999988888899999999999999999999988863 3456799999999999999999999999
Q ss_pred CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEE
Q psy7773 620 SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRV 699 (1281)
Q Consensus 620 ~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rl 699 (1281)
...+.++.|... ......++|+||||+++..+.. +....|++|||||||+++|..++.++++..+ .+.++|
T Consensus 111 ~~~v~~~~g~~~-------~~~~~~~~ivi~t~~~l~~~~~-l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l-~~~~~l 181 (500)
T 1z63_A 111 HLRFAVFHEDRS-------KIKLEDYDIILTTYAVLLRDTR-LKEVEWKYIVIDEAQNIKNPQTKIFKAVKEL-KSKYRI 181 (500)
T ss_dssp TSCEEECSSSTT-------SCCGGGSSEEEEEHHHHTTCHH-HHTCCEEEEEEETGGGGSCTTSHHHHHHHTS-CEEEEE
T ss_pred CceEEEEecCch-------hccccCCcEEEeeHHHHhccch-hcCCCcCEEEEeCccccCCHhHHHHHHHHhh-ccCcEE
Confidence 999999988752 1223568999999999987765 6778999999999999999999999999876 889999
Q ss_pred EeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHH--Hh
Q psy7773 700 LLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKE--VE 777 (1281)
Q Consensus 700 lLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~--v~ 777 (1281)
+|||||++|++.|+|++++|+.|+.+++...|...|..|+.... ......|+.++.|+++||++.+ +.
T Consensus 182 ~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~----------~~~~~~l~~~l~~~~lrr~k~~~~~~ 251 (500)
T 1z63_A 182 ALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD----------NMAKEELKAIISPFILRRTKYDKAII 251 (500)
T ss_dssp EECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC----------HHHHHHHHHHHTTTEECCCTTCHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhcccccccc----------HHHHHHHHHHHhhHeeeecccccchh
Confidence 99999999999999999999999999999999988887764421 1235678999999999999875 66
Q ss_pred hcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhcC
Q psy7773 778 SQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQ 857 (1281)
Q Consensus 778 ~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~ 857 (1281)
..||++.+..++|+|++.|+.+|+.+.......... ..+......+...++.||++|+||.++..
T Consensus 252 ~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~lr~~~~~p~l~~~----------- 316 (500)
T 1z63_A 252 NDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDS----VTGIKRKGMILSTLLKLKQIVDHPALLKG----------- 316 (500)
T ss_dssp TTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTT----CCTHHHHHHHHHHHHHHHHHTTCTHHHHC-----------
T ss_pred hcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHh----hhcccchHHHHHHHHHHHHHhCCHHHhcC-----------
Confidence 789999999999999999999999887654322211 11222345677889999999999987642
Q ss_pred CCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHC-CCcEEEEeCCCChHHHHHHHHhhcC
Q psy7773 858 NNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR-DFSYLRLDGTTKSEDRGELLRKFNE 936 (1281)
Q Consensus 858 ~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~-g~~~~~l~G~~~~~~R~~~i~~Fn~ 936 (1281)
.......++|+..|.++|..+...++|+||||+++.+++.|..+|... |+.+..++|+++..+|..+++.|++
T Consensus 317 ------~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~ 390 (500)
T 1z63_A 317 ------GEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQN 390 (500)
T ss_dssp ------SCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHH
T ss_pred ------ccchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcC
Confidence 123456789999999999999999999999999999999999999886 9999999999999999999999998
Q ss_pred CCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHHHHHHHHH
Q psy7773 937 PESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNM 1016 (1281)
Q Consensus 937 ~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~~~~K~~l 1016 (1281)
+. .+.++|+||+++|+||||+.|++||+||++|||..+.||+||+||+||+++|.||+|++.+|+|++|++++..|..+
T Consensus 391 ~~-~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l 469 (500)
T 1z63_A 391 NP-SVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSL 469 (500)
T ss_dssp CT-TCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSS
T ss_pred CC-CCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 53 34568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC
Q psy7773 1017 DEKVIQAG 1024 (1281)
Q Consensus 1017 ~~~vi~~g 1024 (1281)
++.+++++
T Consensus 470 ~~~~~~~~ 477 (500)
T 1z63_A 470 FKDIISSG 477 (500)
T ss_dssp SSSGGGST
T ss_pred HHHHhhcC
Confidence 99999875
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.6e-49 Score=518.09 Aligned_cols=438 Identities=19% Similarity=0.233 Sum_probs=330.3
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCc
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSAN 622 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~ 622 (1281)
..+|+|||.+++.|++.. .+.++||||+||+|||+++++++..++. .+..+++|||||.+++.||..+|.+|+ +..
T Consensus 151 ~~~LrpyQ~eav~~~l~~--~~~~~LLad~tGlGKTi~Ai~~i~~l~~-~g~~~rvLIVvP~sLl~Qw~~E~~~~f-~l~ 226 (968)
T 3dmq_A 151 RTSLIPHQLNIAHDVGRR--HAPRVLLADEVGLGKTIEAGMILHQQLL-SGAAERVLIIVPETLQHQWLVEMLRRF-NLR 226 (968)
T ss_dssp SSCCCHHHHHHHHHHHHS--SSCEEEECCCTTSCHHHHHHHHHHHHHH-TSSCCCEEEECCTTTHHHHHHHHHHHS-CCC
T ss_pred CCCCcHHHHHHHHHHHHh--cCCCEEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEeCHHHHHHHHHHHHHHh-CCC
Confidence 458999999999999874 3567899999999999999999988874 455679999999999999999999998 688
Q ss_pred EEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc---cccccCceeEEEEeCCccccccchH---HHHHHHhhh-cc
Q psy7773 623 VVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK---SVLSKIQWKCMIIDEGHRMKNHHCK---LTQTLNTFY-NS 695 (1281)
Q Consensus 623 ~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~---~~l~~~~w~~vIvDEaHr~kn~~s~---~~~~l~~~~-~~ 695 (1281)
+.+|+|................++|+||||+.+.++. ..+....|++|||||||+++|..+. .++.+..+. ++
T Consensus 227 v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~ 306 (968)
T 3dmq_A 227 FALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHV 306 (968)
T ss_dssp CEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTC
T ss_pred EEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcC
Confidence 8888876554433333344567899999999998764 3356679999999999999987644 366666553 57
Q ss_pred CcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhccccc---------CC-----------cccc---------
Q psy7773 696 SHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFA---------TT-----------GEKV--------- 746 (1281)
Q Consensus 696 ~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~---------~~-----------~~~~--------- 746 (1281)
+++|+|||||++|++.|+|++++|+.|+.|.+...|..++..... .. ....
T Consensus 307 ~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~ 386 (968)
T 3dmq_A 307 PGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLL 386 (968)
T ss_dssp SSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTG
T ss_pred CcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHH
Confidence 789999999999999999999999999999999988766432110 00 0000
Q ss_pred -cCC--HHH-HHHHHHHHHHhh-----hHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccC
Q psy7773 747 -ELN--EEE-TILIIRRLHKVL-----RPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKG 817 (1281)
Q Consensus 747 -~~~--~~~-~~~~~~~L~~~l-----~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~ 817 (1281)
... ... .......+..++ ..+++|+++..+ ..+|.+....+.+++++....+|.........
T Consensus 387 ~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i-~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~-------- 457 (968)
T 3dmq_A 387 QAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV-KGFPKRELHTIKLPLPTQYQTAIKVSGIMGAR-------- 457 (968)
T ss_dssp GGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC-CCCCCCCCCEEEECCCHHHHHHHHHHHHTTCC--------
T ss_pred hcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhh-cccChhheEeeecCCCHHHHHHHHHHhhhhhh--------
Confidence 000 000 000011112222 223344444444 37899999999999999999988764322100
Q ss_pred CCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEech
Q psy7773 818 KTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQM 897 (1281)
Q Consensus 818 ~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~ 897 (1281)
...... ... +.+|-.... .+. ......+..++|+..|..+|.. ..+.++||||++
T Consensus 458 ~~~~~~----------~~~-~l~pe~~~~-------~l~-----~~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~ 512 (968)
T 3dmq_A 458 KSAEDR----------ARD-MLYPERIYQ-------EFE-----GDNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAK 512 (968)
T ss_dssp SSGGGG----------THH-HHCSGGGTT-------TTT-----SSSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSS
T ss_pred hhhHHH----------Hhh-hcChHHHHH-------Hhh-----hhhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCc
Confidence 000000 011 112211100 000 0122456678999999999987 568899999999
Q ss_pred HHHHHHHHHHHHH-CCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhh
Q psy7773 898 TQLMTILEDYFIW-RDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDL 976 (1281)
Q Consensus 898 ~~~ld~L~~~L~~-~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~ 976 (1281)
+.+++.|...|.. .|+++..+||+++..+|..+++.|+++++.+.| |+||+++++|||++.|++||+||+||||..+.
T Consensus 513 ~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~v-LvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~ 591 (968)
T 3dmq_A 513 AATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQV-LLCSEIGSEGRNFQFASHMVMFDLPFNPDLLE 591 (968)
T ss_dssp THHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEE-EECSCCTTCSSCCTTCCEEECSSCCSSHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccE-EEecchhhcCCCcccCcEEEEecCCCCHHHHH
Confidence 9999999999995 599999999999999999999999997644655 88999999999999999999999999999999
Q ss_pred hHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHH
Q psy7773 977 QAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDEK 1019 (1281)
Q Consensus 977 Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~~~~K~~l~~~ 1019 (1281)
|++||++|+||++.|.||++++.+|+|++|+..+..|+.++..
T Consensus 592 Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~ 634 (968)
T 3dmq_A 592 QRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEH 634 (968)
T ss_dssp HHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSS
T ss_pred HHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCceec
Confidence 9999999999999999999999999999999999988876543
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.2e-43 Score=431.06 Aligned_cols=438 Identities=18% Similarity=0.220 Sum_probs=292.7
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHC--CC
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWA--PS 620 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~--p~ 620 (1281)
.+|+|||.+++.|++. + ++||+++||+|||+++++++..++. ...+++|||||. +++.||..+|.+|+ |.
T Consensus 8 ~~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp HCCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CCccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 3799999999999875 3 8999999999999999999888765 345799999998 77899999999998 55
Q ss_pred CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhccc--ccccCceeEEEEeCCccccccch--HHHHHHHhhhccC
Q psy7773 621 ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKS--VLSKIQWKCMIIDEGHRMKNHHC--KLTQTLNTFYNSS 696 (1281)
Q Consensus 621 ~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~--~l~~~~w~~vIvDEaHr~kn~~s--~~~~~l~~~~~~~ 696 (1281)
..+..++|.......... ...++|+||||+.+..... .+....|++|||||||++++..+ .+...+....+..
T Consensus 81 ~~v~~~~g~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~ 157 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSKA---WARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNP 157 (494)
T ss_dssp GGEEEECSCSCHHHHHHH---HHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSC
T ss_pred hheEEeeCCcchhhhhhh---ccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCC
Confidence 689999987654432111 1257999999999987533 45566899999999999997533 2223333333578
Q ss_pred cEEEeecCCCCCChhHHHHHHhhhcCCCCC---ChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhH
Q psy7773 697 HRVLLTGTPLQNKLPELWALLNFLLPSIFK---SCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLK 773 (1281)
Q Consensus 697 ~rllLTgTPl~n~~~el~~ll~fl~p~~~~---~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k 773 (1281)
++|+|||||. ++..+++.++.++.+..+. ....+...+..+............ ....+...+.+++.++++
T Consensus 158 ~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 231 (494)
T 1wp9_A 158 LVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPE-----IYKEVRKLLREMLRDALK 231 (494)
T ss_dssp CEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCH-----HHHHHHHHHHHHHHHHHH
T ss_pred eEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcH-----HHHHHHHHHHHHHHHHHH
Confidence 8999999999 7778888888877654321 111111111111111111112222 245677788888888888
Q ss_pred HHHhhcCCCceEEEEEcCCCHHH-----HHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCc-----cc
Q psy7773 774 KEVESQLPEKVEYIIKCDMSGLQ-----KLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHP-----FM 843 (1281)
Q Consensus 774 ~~v~~~lP~k~~~~v~~~ls~~q-----~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp-----~l 843 (1281)
......+..... ..++... ..++..+.. ..............+..+..+..+. ..
T Consensus 232 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (494)
T 1wp9_A 232 PLAETGLLESSS----PDIPKKEVLRAGQIINEEMAK-----------GNHDLRGLLLYHAMALKLHHAIELLETQGLSA 296 (494)
T ss_dssp HHHHHTSSSCCC----TTSCHHHHHHHHHHHHHHHTT-----------TCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccccccC----CCcchhHHHHHHHHHHHHhhc-----------cccchhhHHHHHHHHHHHHHHHHHHHhhcHHH
Confidence 766554443221 1222221 122222211 0011111111222222222221110 00
Q ss_pred hhhhHHHHHhhhcC-----------CCcccc-------CCccccccchHHHHHHHhhhhh--hcCCeEEEEechHHHHHH
Q psy7773 844 FQNIEEKYCQHIGQ-----------NNTVVS-------GPDIYRTSGKFELLDRILPKFK--ETKHRVLMFCQMTQLMTI 903 (1281)
Q Consensus 844 ~~~~~~~~~~~~~~-----------~~~~~~-------~~~~~~~s~K~~~L~~lL~~~~--~~~~kvLIFsq~~~~ld~ 903 (1281)
+...-......... ...... .......++|+..|.++|..+. ..++++||||+++.+++.
T Consensus 297 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~ 376 (494)
T 1wp9_A 297 LRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKK 376 (494)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHH
T ss_pred HHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHH
Confidence 00000000000000 000000 0011146789999999999876 578999999999999999
Q ss_pred HHHHHHHCCCcEEEEeC--------CCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhh
Q psy7773 904 LEDYFIWRDFSYLRLDG--------TTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQD 975 (1281)
Q Consensus 904 L~~~L~~~g~~~~~l~G--------~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~ 975 (1281)
|..+|...|+++..++| +++..+|..+++.|+++... +|+||.++|+||||+.|++||+||++|||..+
T Consensus 377 l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~---vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~ 453 (494)
T 1wp9_A 377 IVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN---VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRS 453 (494)
T ss_dssp HHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS---EEEECGGGGGGGGSTTCCEEEESSCCHHHHHH
T ss_pred HHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCce---EEEECCccccCCCchhCCEEEEeCCCCCHHHH
Confidence 99999999999999999 99999999999999986644 59999999999999999999999999999999
Q ss_pred hhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHHHHHHHHHHH
Q psy7773 976 LQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDE 1018 (1281)
Q Consensus 976 ~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~~~~K~~l~~ 1018 (1281)
.||+||+||.|| +.+|+|++.+|+|++++.++..|..+..
T Consensus 454 ~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 454 IQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp HHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred HHHHhhccCCCC---ceEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 999999999998 8999999999999999999998877653
No 6
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.7e-42 Score=432.73 Aligned_cols=316 Identities=29% Similarity=0.475 Sum_probs=261.1
Q ss_pred CcccCCHHHHHHHHHHhCCCCCCCHHHHHHHhcccccccCcccc--ccHHHHHHHHHHHHHHhhhhHHhhchhhhhhcCC
Q psy7773 1 TPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVE--LNEEETILIIRRLHKVLRPFLLRRLKKEVESQLP 78 (1281)
Q Consensus 1 TPiqN~~~eL~sll~fL~p~~l~~~~~F~~~~~~~~~~~~~~~~--~~~~~~~~~~~~L~~~l~~~~lRR~k~dv~~~LP 78 (1281)
||+||++.|||+|++||.|++|++...|.++|..|+..+..... .........+.+|+.++.+|++||++.++...||
T Consensus 229 TPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP 308 (644)
T 1z3i_X 229 TPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLP 308 (644)
T ss_dssp SCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSC
T ss_pred CcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCC
Confidence 99999999999999999999999999999999888654332222 1223445667889999999999999999999999
Q ss_pred CceEEEEEeCCCHHHHHHHHHHHHhhhhhccccccCCCCCCchHHHHHHHHHHHHHcCCCcCchhhHHHHhhhhcC----
Q psy7773 79 EKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQ---- 154 (1281)
Q Consensus 79 ~k~~~~v~v~ls~~Q~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~~~~hP~l~~~~~~~~~~~~~~---- 154 (1281)
++.+.+++|+||+.|+.+|+.+........... ........+..++.||++|+||.++.............
T Consensus 309 ~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~-----~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~ 383 (644)
T 1z3i_X 309 VKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQ-----TGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDL 383 (644)
T ss_dssp CEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSC-----TTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGT
T ss_pred CceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHh-----cCccchhHHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhh
Confidence 999999999999999999999877543321111 11233567888999999999998875322110000000
Q ss_pred -CCccccCCcccccCcHHHHHHHHHHHhhh-CCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhc
Q psy7773 155 -NNTVVSGPDIYRTSGKFELLDRILPKFKE-TKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFN 232 (1281)
Q Consensus 155 -~~~~~~~~~~~~~s~K~~~L~~ll~~~~~-~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~ 232 (1281)
.............|+|+..|..++..+.. .++|+||||+|+.+++.|..+|...|+.+++++|+++..+|+.+++.|+
T Consensus 384 ~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~ 463 (644)
T 1z3i_X 384 FPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFN 463 (644)
T ss_dssp SCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHH
T ss_pred ccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhc
Confidence 00011111223569999999999988764 6899999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhccc
Q psy7773 233 EPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLN 312 (1281)
Q Consensus 233 ~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~~ 312 (1281)
+++....|+|+||++||+||||+.|++||+||++|||+.+.||+||+||+||+++|+||+|++.+|+||+|++++..|..
T Consensus 464 ~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~ 543 (644)
T 1z3i_X 464 NPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKA 543 (644)
T ss_dssp STTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHH
Confidence 87766678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhcc
Q psy7773 313 MDEKEYHRN 321 (1281)
Q Consensus 313 l~~~~~~~~ 321 (1281)
+...++...
T Consensus 544 l~~~v~~~~ 552 (644)
T 1z3i_X 544 LSSCVVDEE 552 (644)
T ss_dssp TSCCCCSCS
T ss_pred HHHHHhcCc
Confidence 987776653
No 7
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-41 Score=440.23 Aligned_cols=304 Identities=43% Similarity=0.701 Sum_probs=244.0
Q ss_pred CcccCCHHHHHHHHHHhCCCCCCCHHHHHHHhcccccccCccccccHHHHHHHHHHHHHHhhhhHHhhchhhhhhcCCCc
Q psy7773 1 TPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEK 80 (1281)
Q Consensus 1 TPiqN~~~eL~sll~fL~p~~l~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~dv~~~LP~k 80 (1281)
||+||++.|||+||+||.|+.|+....|..... .......+..|+.++.|+++||++.+|...||++
T Consensus 404 TPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~-------------~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k 470 (800)
T 3mwy_W 404 TPLQNNIKELAALVNFLMPGRFTIDQEIDFENQ-------------DEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSK 470 (800)
T ss_dssp CCCSSCSHHHHHHHHHHCSCCC---------CC-------------TTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCE
T ss_pred CcCCCCHHHHHHHHHHhCccccCchhhhccccc-------------chhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCc
Confidence 999999999999999999999987665532111 1123345778999999999999999999999999
Q ss_pred eEEEEEeCCCHHHHHHHHHHHHhhhhhccccccCCCCCCchHHHHHHHHHHHHHcCCCcCchhhHHHHhhhhcCCCcc--
Q psy7773 81 VEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNNTV-- 158 (1281)
Q Consensus 81 ~~~~v~v~ls~~Q~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~~~~hP~l~~~~~~~~~~~~~~~~~~-- 158 (1281)
.+.+++|+||+.|+.+|+.+........... .......+++.++.||++|+||+++.................
T Consensus 471 ~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~-----~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~ 545 (800)
T 3mwy_W 471 TERILRVELSDVQTEYYKNILTKNYSALTAG-----AKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRE 545 (800)
T ss_dssp EEEEEEECCCHHHHHHHHHHHHHCCC---------------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHHHhhc-----cccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHH
Confidence 9999999999999999999887644333221 122334588999999999999999876554432221111000
Q ss_pred ccCCcccccCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCc
Q psy7773 159 VSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKY 238 (1281)
Q Consensus 159 ~~~~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~ 238 (1281)
.....++..|+|+.+|..+|..+...|+||||||+|+.++++|..+|...|+++++++|+++..+|+.+++.|+++++..
T Consensus 546 ~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~ 625 (800)
T 3mwy_W 546 NVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSND 625 (800)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSC
T ss_pred HHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCc
Confidence 00012345799999999999999999999999999999999999999999999999999999999999999999987777
Q ss_pred eEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhccccchhhh
Q psy7773 239 FIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDEKEY 318 (1281)
Q Consensus 239 ~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~~l~~~~~ 318 (1281)
.|||+||++||+||||+.|++||+||++|||..+.||+||+||+||+++|+||+|++.+|+|++|++++..|..+...++
T Consensus 626 ~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi 705 (800)
T 3mwy_W 626 FVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAII 705 (800)
T ss_dssp CCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTSCC---
T ss_pred eEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred hccc
Q psy7773 319 HRNN 322 (1281)
Q Consensus 319 ~~~~ 322 (1281)
+.+.
T Consensus 706 ~~~~ 709 (800)
T 3mwy_W 706 SLGV 709 (800)
T ss_dssp ----
T ss_pred ccCc
Confidence 6543
No 8
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=3.6e-40 Score=369.21 Aligned_cols=236 Identities=28% Similarity=0.437 Sum_probs=180.9
Q ss_pred HHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhh
Q psy7773 767 FLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQN 846 (1281)
Q Consensus 767 ~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~ 846 (1281)
--+||+|++|..+||++.+.+++|+||+.|+.+|+.+........... .+......+++.++.||++|+||+++..
T Consensus 12 ~~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~----~~~~~~~~~l~~l~~Lrq~~~hP~l~~~ 87 (271)
T 1z5z_A 12 SGLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSV----TGIKRKGMILSTLLKLKQIVDHPALLKG 87 (271)
T ss_dssp ----------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHHHHHHHHHHTTCTHHHHC
T ss_pred ccccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhc----cccchHHHHHHHHHHHHHHcCCHHHhcC
Confidence 358999999999999999999999999999999999876543322211 1112234678899999999999998741
Q ss_pred hHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHC-CCcEEEEeCCCChH
Q psy7773 847 IEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR-DFSYLRLDGTTKSE 925 (1281)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~-g~~~~~l~G~~~~~ 925 (1281)
.......|+|+..|.++|..+...++|+||||+++.++++|..+|... |+++.+++|+++..
T Consensus 88 -----------------~~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~ 150 (271)
T 1z5z_A 88 -----------------GEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKK 150 (271)
T ss_dssp -----------------SCCCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHH
T ss_pred -----------------CccccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHH
Confidence 123456899999999999999889999999999999999999999985 99999999999999
Q ss_pred HHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHH
Q psy7773 926 DRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEER 1005 (1281)
Q Consensus 926 ~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~ 1005 (1281)
+|..+++.|+++. .+.|||+||++||+||||+.|++||+||+||||..+.||+||+||+||+++|+||+|++.+|+|++
T Consensus 151 ~R~~~i~~F~~~~-~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~ 229 (271)
T 1z5z_A 151 ERDDIISKFQNNP-SVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEK 229 (271)
T ss_dssp HHHHHHHHHHHCT-TCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHH
T ss_pred HHHHHHHHhcCCC-CCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHH
Confidence 9999999999853 355789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcC
Q psy7773 1006 ILAAARYKLNMDEKVIQAG 1024 (1281)
Q Consensus 1006 I~~~~~~K~~l~~~vi~~g 1024 (1281)
|++++..|..+++.+++++
T Consensus 230 i~~~~~~K~~l~~~~~~~~ 248 (271)
T 1z5z_A 230 IDQLLAFKRSLFKDIISSG 248 (271)
T ss_dssp HHHHHHHCHHHHTTGGGGT
T ss_pred HHHHHHHHHHHHHHHHccC
Confidence 9999999999999999875
No 9
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=3e-39 Score=361.74 Aligned_cols=237 Identities=27% Similarity=0.410 Sum_probs=179.6
Q ss_pred hhHHhhchhhhhhcCCCceEEEEEeCCCHHHHHHHHHHHHhhhhhccccccCCCCCCchHHHHHHHHHHHHHcCCCcCch
Q psy7773 63 PFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQ 142 (1281)
Q Consensus 63 ~~~lRR~k~dv~~~LP~k~~~~v~v~ls~~Q~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~~~~hP~l~~ 142 (1281)
+--+||+|++|..+|||+.+.+++|+||+.|+++|+.+........... .+......++..+++||++|+||.++.
T Consensus 11 ~~~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~----~~~~~~~~~l~~l~~Lrq~~~hP~l~~ 86 (271)
T 1z5z_A 11 SSGLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSV----TGIKRKGMILSTLLKLKQIVDHPALLK 86 (271)
T ss_dssp -----------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTC----CHHHHHHHHHHHHHHHHHHTTCTHHHH
T ss_pred cccccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhc----cccchHHHHHHHHHHHHHHcCCHHHhc
Confidence 3458999999999999999999999999999999999987654333211 111234567899999999999998864
Q ss_pred hhHHHHhhhhcCCCccccCCcccccCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhC-CCcEEEecCCCCH
Q psy7773 143 NIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR-DFSYLRLDGTTKS 221 (1281)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~-g~~~~~~~g~~~~ 221 (1281)
. .......|+|+..|.++|..+...++|+||||+|+.+++.|...|... |+++..++|+++.
T Consensus 87 ~-----------------~~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~ 149 (271)
T 1z5z_A 87 G-----------------GEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSK 149 (271)
T ss_dssp C-----------------SCCCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCH
T ss_pred C-----------------CccccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCH
Confidence 2 113456799999999999999888999999999999999999999885 9999999999999
Q ss_pred HHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHH
Q psy7773 222 EDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEE 301 (1281)
Q Consensus 222 ~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee 301 (1281)
.+|+.+++.|++++ .+.|+|+||++||+||||+.|++||+||+||||..+.||+||+||+||+++|+||+|++.+|+||
T Consensus 150 ~~R~~~i~~F~~~~-~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe 228 (271)
T 1z5z_A 150 KERDDIISKFQNNP-SVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 228 (271)
T ss_dssp HHHHHHHHHHHHCT-TCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHH
T ss_pred HHHHHHHHHhcCCC-CCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHH
Confidence 99999999999853 35689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccchhhhhcc
Q psy7773 302 RILAAARYKLNMDEKEYHRN 321 (1281)
Q Consensus 302 ~i~~~~~~K~~l~~~~~~~~ 321 (1281)
+|++++..|..++..++..+
T Consensus 229 ~i~~~~~~K~~l~~~~~~~~ 248 (271)
T 1z5z_A 229 KIDQLLAFKRSLFKDIISSG 248 (271)
T ss_dssp HHHHHHHHCHHHHTTGGGGT
T ss_pred HHHHHHHHHHHHHHHHHccC
Confidence 99999999999988777654
No 10
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=2.9e-39 Score=395.67 Aligned_cols=376 Identities=16% Similarity=0.212 Sum_probs=257.0
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHCCCC
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWAPSA 621 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~p~~ 621 (1281)
..+|+|||.+++.+++. +.++||+++||+|||++++.++..+ .+++|||||. +++.||..+|.+| +.
T Consensus 91 ~~~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~--~~ 158 (472)
T 2fwr_A 91 EISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--GE 158 (472)
T ss_dssp CCCBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG--CG
T ss_pred CCCcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC--CC
Confidence 56899999999998764 3469999999999999998887764 3699999999 7889999999995 56
Q ss_pred c-EEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEE
Q psy7773 622 N-VVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVL 700 (1281)
Q Consensus 622 ~-~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rll 700 (1281)
. +.+++|... ...+|+|+||+.+......+. ..|++|||||||++.+.... .+...+.+.++|+
T Consensus 159 ~~v~~~~g~~~-----------~~~~Ivv~T~~~l~~~~~~~~-~~~~liIvDEaH~~~~~~~~---~~~~~~~~~~~l~ 223 (472)
T 2fwr_A 159 EYVGEFSGRIK-----------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAESYV---QIAQMSIAPFRLG 223 (472)
T ss_dssp GGEEEBSSSCB-----------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEETGGGTTSTTTH---HHHHTCCCSEEEE
T ss_pred cceEEECCCcC-----------CcCCEEEEEcHHHHHHHHHhc-CCCCEEEEECCcCCCChHHH---HHHHhcCCCeEEE
Confidence 6 888887532 357899999999987665443 35999999999999987643 3444458889999
Q ss_pred eecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHHh-hc
Q psy7773 701 LTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVE-SQ 779 (1281)
Q Consensus 701 LTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~-~~ 779 (1281)
|||||.+++..+. .+..++.|. +.++...++. ..
T Consensus 224 lSATp~~~~~~~~-~l~~~~~~~--------------------------------------------~~~~~~~~l~~~~ 258 (472)
T 2fwr_A 224 LTATFEREDGRHE-ILKEVVGGK--------------------------------------------VFELFPDSLAGKH 258 (472)
T ss_dssp EESCCCCTTSGGG-SHHHHTCCE--------------------------------------------EEECCHHHHTSCC
T ss_pred EecCccCCCCHHH-HHHHHhCCe--------------------------------------------EeecCHHHHhcCc
Confidence 9999997653220 011111111 1111112222 23
Q ss_pred CCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHH-HHHhhhcCC
Q psy7773 780 LPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEE-KYCQHIGQN 858 (1281)
Q Consensus 780 lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~-~~~~~~~~~ 858 (1281)
+++.....+.+.+++.+...|..+.......................+ + ......+........ ....
T Consensus 259 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~----- 327 (472)
T 2fwr_A 259 LAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKI---V---MASGYDERAYEALRAWEEAR----- 327 (472)
T ss_dssp CCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTT---T---TTTCCSSSSSTTTHHHHHHH-----
T ss_pred CCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHH---H---HHhccCHHHHHHHHHHHHHH-----
Confidence 777777888999999999888765432221111100000000000000 0 000000000000000 0000
Q ss_pred CccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCC
Q psy7773 859 NTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPE 938 (1281)
Q Consensus 859 ~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~ 938 (1281)
......+.|+..|..+|.. ..++++||||+++.+++.|...|. +..++|+++..+|..+++.|+++.
T Consensus 328 ------~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~ 394 (472)
T 2fwr_A 328 ------RIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGR 394 (472)
T ss_dssp ------HHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSS
T ss_pred ------HHhhcChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCC
Confidence 0012356799999999987 468899999999999999999984 456899999999999999999866
Q ss_pred CCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCC-CceEEEEEEeCCCHHHHHHHHHHHHHHHH
Q psy7773 939 SKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQK-NEVRVLRLITVNSVEERILAAARYKLNMD 1017 (1281)
Q Consensus 939 ~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~-k~V~V~rli~~~tiEe~I~~~~~~K~~l~ 1017 (1281)
.. +|++|+++++|||++.+++||+||++|||..+.|++||++|.||. +.|.||.|++.+|+|+++.++...|..++
T Consensus 395 ~~---vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~a 471 (472)
T 2fwr_A 395 FR---AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKGA 471 (472)
T ss_dssp CS---BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC---------------
T ss_pred CC---EEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHHHHHHHhhccC
Confidence 55 589999999999999999999999999999999999999999998 78999999999999999999988776543
No 11
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1e-37 Score=384.72 Aligned_cols=289 Identities=28% Similarity=0.498 Sum_probs=248.1
Q ss_pred CcccCCHHHHHHHHHHhCCCCCCCHHHHHHHhcccccccCccccccHHHHHHHHHHHHHHhhhhHHhhchhh--hhhcCC
Q psy7773 1 TPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKE--VESQLP 78 (1281)
Q Consensus 1 TPiqN~~~eL~sll~fL~p~~l~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~d--v~~~LP 78 (1281)
||++|++.|||++++||.|++|++...|...|..|...+. .....+|+.++.++++||++.+ +...||
T Consensus 186 TP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~----------~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp 255 (500)
T 1z63_A 186 TPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD----------NMAKEELKAIISPFILRRTKYDKAIINDLP 255 (500)
T ss_dssp SCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC----------HHHHHHHHHHHTTTEECCCTTCHHHHTTSC
T ss_pred CCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhcccccccc----------HHHHHHHHHHHhhHeeeecccccchhhcCC
Confidence 9999999999999999999999999999999987764422 1235678999999999999976 667899
Q ss_pred CceEEEEEeCCCHHHHHHHHHHHHhhhhhccccccCCCCCCchHHHHHHHHHHHHHcCCCcCchhhHHHHhhhhcCCCcc
Q psy7773 79 EKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNNTV 158 (1281)
Q Consensus 79 ~k~~~~v~v~ls~~Q~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~~~~hP~l~~~~~~~~~~~~~~~~~~ 158 (1281)
++.+.+++|+|++.|+.+|+.+.......... ..+......++..+..||++|+||.++..
T Consensus 256 ~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~lr~~~~~p~l~~~--------------- 316 (500)
T 1z63_A 256 DKIETNVYCNLTPEQAAMYKAEVENLFNNIDS----VTGIKRKGMILSTLLKLKQIVDHPALLKG--------------- 316 (500)
T ss_dssp SEEEEEEEECCCHHHHHHHHHHHHHHTTTTTT----CCTHHHHHHHHHHHHHHHHHTTCTHHHHC---------------
T ss_pred CCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHh----hhcccchHHHHHHHHHHHHHhCCHHHhcC---------------
Confidence 99999999999999999999987654332211 12223445678889999999999987542
Q ss_pred ccCCcccccCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhC-CCcEEEecCCCCHHHHHHHHHHhcCCCCC
Q psy7773 159 VSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR-DFSYLRLDGTTKSEDRGELLRKFNEPESK 237 (1281)
Q Consensus 159 ~~~~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~-g~~~~~~~g~~~~~~R~~~i~~F~~~~~~ 237 (1281)
.......++|+..|.++|..+...+.|+||||++..+++.|...|... |+.+..++|+++..+|..+++.|++++ .
T Consensus 317 --~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~-~ 393 (500)
T 1z63_A 317 --GEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNP-S 393 (500)
T ss_dssp --SCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCT-T
T ss_pred --ccchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCC-C
Confidence 123456789999999999999889999999999999999999999886 999999999999999999999999853 3
Q ss_pred ceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhccccchhh
Q psy7773 238 YFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDEKE 317 (1281)
Q Consensus 238 ~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~~l~~~~ 317 (1281)
+.++|+||.++|+|+||+.|++||+||+||||..+.||+||+||+||+++|+||+|++.+|+|++|++++..|..+...+
T Consensus 394 ~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~~l~~~~ 473 (500)
T 1z63_A 394 VKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDI 473 (500)
T ss_dssp CCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCSSSSSSG
T ss_pred CCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Confidence 55789999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred hhcc
Q psy7773 318 YHRN 321 (1281)
Q Consensus 318 ~~~~ 321 (1281)
+..+
T Consensus 474 ~~~~ 477 (500)
T 1z63_A 474 ISSG 477 (500)
T ss_dssp GGST
T ss_pred hhcC
Confidence 7764
No 12
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=7.6e-37 Score=396.39 Aligned_cols=451 Identities=14% Similarity=0.186 Sum_probs=239.8
Q ss_pred ccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCC--CCCEEEEeCCc-cHHHHHHHHHHHC
Q psy7773 542 VNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKN--LGPYLVIVPLS-TLSNWVLEFEKWA 618 (1281)
Q Consensus 542 ~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~--~~~~LIV~P~s-~l~~W~~E~~~~~ 618 (1281)
...+|+|||.+++.+++. +.++|++++||+|||++++..+..++..... .+++|||||.. ++.||..+|.+|+
T Consensus 245 g~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 245 ETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp ---CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh----CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 356899999999998863 6789999999999999999888887755422 57899999975 7799999999998
Q ss_pred C--CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhccc--cc-ccCceeEEEEeCCccccccchHHHHHHHhhh
Q psy7773 619 P--SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKS--VL-SKIQWKCMIIDEGHRMKNHHCKLTQTLNTFY 693 (1281)
Q Consensus 619 p--~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~--~l-~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~ 693 (1281)
+ ++.+..++|.......... ....++|+|+||+.|..... .+ ....|++|||||||++.+..+ +...+..+.
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~--~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~-~~~i~~~~~ 397 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEK--VIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYL 397 (797)
T ss_dssp GGGTCCEEEECCC-----CHHH--HHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSH-HHHHHHHHH
T ss_pred ccCCceEEEEeCCcchhhhHHH--hhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCcc-HHHHHHHHH
Confidence 7 7889999988644322111 12358999999999976532 22 334689999999999998664 333333332
Q ss_pred c--------cCcEEEeecCCCCCChhHHHHH-------HhhhcCCC----CCChhHHHHHhcccccCCccccc-CCH---
Q psy7773 694 N--------SSHRVLLTGTPLQNKLPELWAL-------LNFLLPSI----FKSCSTFEQWFNAPFATTGEKVE-LNE--- 750 (1281)
Q Consensus 694 ~--------~~~rllLTgTPl~n~~~el~~l-------l~fl~p~~----~~~~~~f~~~f~~~~~~~~~~~~-~~~--- 750 (1281)
. ..++++|||||.+++..+++.. ...+.+.. ......+..++..|......... ...
T Consensus 398 ~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 477 (797)
T 4a2q_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 477 (797)
T ss_dssp HHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHH
T ss_pred HHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHH
Confidence 2 2678999999988664433322 22333322 22334556666555432211110 111
Q ss_pred HHHHHHHHHHHHhhhHHH----------------------HHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhccc
Q psy7773 751 EETILIIRRLHKVLRPFL----------------------LRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGI 808 (1281)
Q Consensus 751 ~~~~~~~~~L~~~l~~~~----------------------lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~ 808 (1281)
.........++.+++.++ ....+......+|. ...+..+|..+.....
T Consensus 478 ~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~ 547 (797)
T 4a2q_A 478 AIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLED----------KEEESRICRALFICTE 547 (797)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSS----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccc----------cchhhHHHHHHHHHHH
Confidence 111122233333333321 11111101111111 1111112211111000
Q ss_pred cccc--CCccCCCCCCchHHHHHHHHHHHHhcC----CccchhhhHHHHHhhhcCCCc--cccCCccccccchHHHHHHH
Q psy7773 809 LLTD--GSEKGKTGEGGARALKNTIVQLRKLCN----HPFMFQNIEEKYCQHIGQNNT--VVSGPDIYRTSGKFELLDRI 880 (1281)
Q Consensus 809 ~~~~--~~~~~~~~~~~~~~~~~~l~~Lrk~~~----hp~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~K~~~L~~l 880 (1281)
.+.. ... ....... ....+..++..|. ..+ ...+..+...+..... ..........++|+..|..+
T Consensus 548 ~l~~~~~~~-~~~~~~~---~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~l 621 (797)
T 4a2q_A 548 HLRKYNDAL-IISEDAR---IIDALSYLTEFFTNVKNGPY--TELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCI 621 (797)
T ss_dssp HHHHHHHHH-HHHHHSC---HHHHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHH-hhhcccc---HHHHHHHHHHHHHHHhccCc--cHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHH
Confidence 0000 000 0000000 0001111111110 000 0000000000000000 00000112358999999999
Q ss_pred hhhhh--hcCCeEEEEechHHHHHHHHHHHHH------------CCCcEEEEeCCCChHHHHHHHHhhcC-CCCCeEEEE
Q psy7773 881 LPKFK--ETKHRVLMFCQMTQLMTILEDYFIW------------RDFSYLRLDGTTKSEDRGELLRKFNE-PESKYFIFL 945 (1281)
Q Consensus 881 L~~~~--~~~~kvLIFsq~~~~ld~L~~~L~~------------~g~~~~~l~G~~~~~~R~~~i~~Fn~-~~~~~~v~L 945 (1281)
|.... ..++|+||||+++.+++.|..+|.. .|..+..+||+++..+|..+++.|++ +... +|
T Consensus 622 L~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~---vL 698 (797)
T 4a2q_A 622 LDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LL 698 (797)
T ss_dssp HHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCS---EE
T ss_pred HHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCce---EE
Confidence 98854 5679999999999999999999976 36677788999999999999999998 6555 69
Q ss_pred EeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy7773 946 LSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDEKVIQA 1023 (1281)
Q Consensus 946 lsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~~~~K~~l~~~vi~~ 1023 (1281)
|||+++|+||||+.|++||+||+||||..|+||+|| + +.+++.+|.|++.++++++ +.....|..+...++..
T Consensus 699 VaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-G---R~~~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~i~~ 771 (797)
T 4a2q_A 699 IATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-G---RAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEK 771 (797)
T ss_dssp EEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred EEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-C---CCCCceEEEEEeCCcHHHH-HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 4 4578999999999999999 67777888887777754
No 13
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2e-36 Score=378.65 Aligned_cols=450 Identities=14% Similarity=0.185 Sum_probs=232.5
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCC--CCCEEEEeCC-ccHHHHHHHHHHHCC-
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKN--LGPYLVIVPL-STLSNWVLEFEKWAP- 619 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~--~~~~LIV~P~-s~l~~W~~E~~~~~p- 619 (1281)
.+|+|||.+++.+++. +.++|++++||+|||++++.++..++..... .+++|||||. +++.||..++.+|++
T Consensus 6 ~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 6 KKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp --CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4799999999999874 6789999999999999999888877754332 5689999998 677999999999987
Q ss_pred -CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccc--c-ccCceeEEEEeCCccccccchHHHHHHHhhh--
Q psy7773 620 -SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSV--L-SKIQWKCMIIDEGHRMKNHHCKLTQTLNTFY-- 693 (1281)
Q Consensus 620 -~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~--l-~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~-- 693 (1281)
++.+..+.|.......... ....++|+|+||+.|...... + ....|++|||||||++.+... ....+..++
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~--~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~~~ 158 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEK--VIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLEQ 158 (556)
T ss_dssp GTCCEEECCCC-----CHHH--HHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSH-HHHHHHHHHHH
T ss_pred cCceEEEEeCCCCcchhHHH--hhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcch-HHHHHHHHHHh
Confidence 7888888887643322111 113478999999999865322 3 344789999999999997764 333333332
Q ss_pred ------ccCcEEEeecCCCCCChhH-------HHHHHhhhcCCCC----CChhHHHHHhcccccCCccccc-CCHHH---
Q psy7773 694 ------NSSHRVLLTGTPLQNKLPE-------LWALLNFLLPSIF----KSCSTFEQWFNAPFATTGEKVE-LNEEE--- 752 (1281)
Q Consensus 694 ------~~~~rllLTgTPl~n~~~e-------l~~ll~fl~p~~~----~~~~~f~~~f~~~~~~~~~~~~-~~~~~--- 752 (1281)
...++++|||||.+++..+ +..+...+.+..+ .....+..++..|......... .....
T Consensus 159 ~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 238 (556)
T ss_dssp HHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHH
T ss_pred hhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHH
Confidence 2367899999998876433 3334444443322 2344555555544422111110 11110
Q ss_pred HHHHHHHHHHhhhH----------------------HHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhccccc
Q psy7773 753 TILIIRRLHKVLRP----------------------FLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILL 810 (1281)
Q Consensus 753 ~~~~~~~L~~~l~~----------------------~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~ 810 (1281)
.......++..+.. ++....+......+|. ...+..+|..+......+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l 308 (556)
T 4a2p_A 239 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLED----------KEEESRICRALFICTEHL 308 (556)
T ss_dssp HHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---C----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccc----------cchhHHHHHHHHHHHHHH
Confidence 11111222222221 1111111111111111 112222222221100000
Q ss_pred ccCC-ccCCCCCCchHH----HHHHHHHHHHhcCCccchhhhHHHHHhhhcCCCc--cccCCccccccchHHHHHHHhhh
Q psy7773 811 TDGS-EKGKTGEGGARA----LKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNNT--VVSGPDIYRTSGKFELLDRILPK 883 (1281)
Q Consensus 811 ~~~~-~~~~~~~~~~~~----~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~K~~~L~~lL~~ 883 (1281)
.... ........+... +...+..++....+ ..+..+...+..... ..........++|+..|..+|..
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~ 383 (556)
T 4a2p_A 309 RKYNDALIISEDARIIDALSYLTEFFTNVKNGPYT-----ELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDD 383 (556)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCC-----HHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHH
Confidence 0000 000000000000 00011111110000 000000000000000 00000111358899999999988
Q ss_pred hh--hcCCeEEEEechHHHHHHHHHHHHHC------------CCcEEEEeCCCChHHHHHHHHhhcC-CCCCeEEEEEec
Q psy7773 884 FK--ETKHRVLMFCQMTQLMTILEDYFIWR------------DFSYLRLDGTTKSEDRGELLRKFNE-PESKYFIFLLST 948 (1281)
Q Consensus 884 ~~--~~~~kvLIFsq~~~~ld~L~~~L~~~------------g~~~~~l~G~~~~~~R~~~i~~Fn~-~~~~~~v~LlsT 948 (1281)
.. ..++|+||||+++.+++.|..+|... |..+..+||+++..+|..+++.|++ +... +||||
T Consensus 384 ~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~---vLvaT 460 (556)
T 4a2p_A 384 AYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LLIAT 460 (556)
T ss_dssp HHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CC---EEEEE
T ss_pred HhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceE---EEEEc
Confidence 76 56889999999999999999999775 5666677788999999999999998 5555 59999
Q ss_pred cccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy7773 949 RAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDEKVIQA 1023 (1281)
Q Consensus 949 ~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~~~~K~~l~~~vi~~ 1023 (1281)
+++|+|||+++|++||+||+||||..|+||+|| |+.+++.+|.|++.++++++ +.....|..+...++..
T Consensus 461 ~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~k~~~~~~~i~~ 530 (556)
T 4a2p_A 461 SVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVEK 530 (556)
T ss_dssp C-----------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCceEEEEEeCcchHHH-HHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 45578999999999999998 66777777777777653
No 14
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.1e-36 Score=398.46 Aligned_cols=452 Identities=14% Similarity=0.175 Sum_probs=239.3
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCC--CCCEEEEeCCc-cHHHHHHHHHHHCC
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKN--LGPYLVIVPLS-TLSNWVLEFEKWAP 619 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~--~~~~LIV~P~s-~l~~W~~E~~~~~p 619 (1281)
..+|+|||.+++.+++. +.++|++++||+|||++++.++..++..... .+++|||||.. ++.||..+|.+|++
T Consensus 246 ~~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 246 TKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 46899999999999863 6789999999999999998888776544321 57899999975 67999999999987
Q ss_pred --CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhccc--cc-ccCceeEEEEeCCccccccchHHHHHHHhhhc
Q psy7773 620 --SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKS--VL-SKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYN 694 (1281)
Q Consensus 620 --~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~--~l-~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~ 694 (1281)
++.+.+++|.......... ....++|+|+||+.|..... .+ ....|++|||||||++.+..+ +...+..+..
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~~--~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~-~~~i~~~~~~ 398 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVEK--VIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHP-YNVLMTRYLE 398 (936)
T ss_dssp TTTCCEEEECCC-----CCHH--HHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCH-HHHHHHHHHH
T ss_pred ccCceEEEEECCcchhhHHHH--hccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCcc-HHHHHHHHHH
Confidence 7888999887644321111 11347999999999986532 22 334689999999999998765 3444433322
Q ss_pred --------cCcEEEeecCCCCCChhHHHHHH-------hhhcCCC----CCChhHHHHHhcccccCCccccc-CCHHH--
Q psy7773 695 --------SSHRVLLTGTPLQNKLPELWALL-------NFLLPSI----FKSCSTFEQWFNAPFATTGEKVE-LNEEE-- 752 (1281)
Q Consensus 695 --------~~~rllLTgTPl~n~~~el~~ll-------~fl~p~~----~~~~~~f~~~f~~~~~~~~~~~~-~~~~~-- 752 (1281)
..++++|||||.+++..+++.++ ..+.+.. ......+..++..|......... .....
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~ 478 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHH
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHH
Confidence 26789999999987654444332 2333322 22334555555554422111110 11111
Q ss_pred -HHHHHHHHHHhhhHH----------------------HHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccc
Q psy7773 753 -TILIIRRLHKVLRPF----------------------LLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGIL 809 (1281)
Q Consensus 753 -~~~~~~~L~~~l~~~----------------------~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~ 809 (1281)
.......++.++..+ +....+......+|.. .....+|..+......
T Consensus 479 ~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~----------~~~~~~~~~l~~~~~~ 548 (936)
T 4a2w_A 479 IISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDK----------EEESRICRALFICTEH 548 (936)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCH----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhccccc----------chhhHHHHHHHHHHHH
Confidence 111222223232221 1111111111122211 1111222111100000
Q ss_pred c--ccCCccCCCCCCchHH----HHHHHHHHHHhcCCccchhhhHHHHHhhhcCCCccccCCccccccchHHHHHHHhhh
Q psy7773 810 L--TDGSEKGKTGEGGARA----LKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPK 883 (1281)
Q Consensus 810 ~--~~~~~~~~~~~~~~~~----~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~ 883 (1281)
+ +.... ......+... +...+..++.....+. -......+.......... .......++|+..|..+|..
T Consensus 549 l~~~~~al-~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~-e~~l~~~~~~~~~~l~~~--~~~~~~~~~K~~~L~~lL~~ 624 (936)
T 4a2w_A 549 LRKYNDAL-IISEDARIIDALSYLTEFFTNVKNGPYTEL-EQHLTAKFQEKEPELIAL--SKDETNENPKLEELVCILDD 624 (936)
T ss_dssp HHHHHHHH-HHHHHSCHHHHHHHHHHHHHHHHHTTCCHH-HHHHHHHHHHHHHHHHHH--HTSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHH-hhhcchhHHHHHHHHHHHHHHHhhccCCHH-HHHHHHHHHHHHHHHHHh--hhccCCCCHHHHHHHHHHHH
Confidence 0 00000 0000000000 0011111111000000 000000000000000000 01112358999999999988
Q ss_pred hh--hcCCeEEEEechHHHHHHHHHHHHHC------------CCcEEEEeCCCChHHHHHHHHhhcC-CCCCeEEEEEec
Q psy7773 884 FK--ETKHRVLMFCQMTQLMTILEDYFIWR------------DFSYLRLDGTTKSEDRGELLRKFNE-PESKYFIFLLST 948 (1281)
Q Consensus 884 ~~--~~~~kvLIFsq~~~~ld~L~~~L~~~------------g~~~~~l~G~~~~~~R~~~i~~Fn~-~~~~~~v~LlsT 948 (1281)
.. ..++|+||||+++.+++.|..+|... |..+..+||+++..+|..+++.|+. +... +||||
T Consensus 625 ~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~---VLVaT 701 (936)
T 4a2w_A 625 AYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR---LLIAT 701 (936)
T ss_dssp TTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCS---EEEEE
T ss_pred HhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCee---EEEEe
Confidence 65 56899999999999999999999976 6667777888999999999999998 6555 69999
Q ss_pred cccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhc
Q psy7773 949 RAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDEKVIQA 1023 (1281)
Q Consensus 949 ~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~~~~K~~l~~~vi~~ 1023 (1281)
+++|+||||+.|++||+||+||||..|+||+|| |+.+++.+|.|++.++++++.+ ....|..+...++..
T Consensus 702 ~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~~i~~ 771 (936)
T 4a2w_A 702 SVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVENEK-CNRYKEEMMNKAVEK 771 (936)
T ss_dssp CC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCCEEEEEEeCCCHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 5567888999999999999866 666777777777654
No 15
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.6e-35 Score=370.31 Aligned_cols=452 Identities=14% Similarity=0.148 Sum_probs=247.2
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCC--CCCEEEEeCC-ccHHHHHHHHHHHCC--
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKN--LGPYLVIVPL-STLSNWVLEFEKWAP-- 619 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~--~~~~LIV~P~-s~l~~W~~E~~~~~p-- 619 (1281)
+|+|||.+++.+++ ++.++|++++||+|||++++.++...+..... .+++|||||. +++.||..++.+|++
T Consensus 4 ~~~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 4 KPRNYQLELALPAK----KGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHh----CCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 79999999999987 46789999999999999999888877755332 5789999998 677999999999986
Q ss_pred CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccc--c-ccCceeEEEEeCCccccccchHHHHHHHhhh---
Q psy7773 620 SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSV--L-SKIQWKCMIIDEGHRMKNHHCKLTQTLNTFY--- 693 (1281)
Q Consensus 620 ~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~--l-~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~--- 693 (1281)
++.+..+.|.......... .....+|+|+||+.|...... + ....|++|||||||++.+..+ ....+..++
T Consensus 80 ~~~~~~~~g~~~~~~~~~~--~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~-~~~~~~~~~~~~ 156 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQH--IIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHP-YNQIMFRYLDHK 156 (555)
T ss_dssp TCCEEEECTTTGGGSCHHH--HHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCH-HHHHHHHHHHHH
T ss_pred CcEEEEEcCCCcchhhHHH--HhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcch-HHHHHHHHHHhh
Confidence 6788888887533211111 112478999999999775332 2 344789999999999998764 333332222
Q ss_pred ------ccCcEEEeecCCCCCChhH-------HHHHHhhhcCCCCC----ChhHHHHHhcccccCCcccc-cCCHH---H
Q psy7773 694 ------NSSHRVLLTGTPLQNKLPE-------LWALLNFLLPSIFK----SCSTFEQWFNAPFATTGEKV-ELNEE---E 752 (1281)
Q Consensus 694 ------~~~~rllLTgTPl~n~~~e-------l~~ll~fl~p~~~~----~~~~f~~~f~~~~~~~~~~~-~~~~~---~ 752 (1281)
...++++|||||.+++..+ +..+..++.+..+. ....+..++..|........ ..... .
T Consensus 157 ~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
T 3tbk_A 157 LGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCI 236 (555)
T ss_dssp TSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHH
T ss_pred hccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHH
Confidence 2257899999999887433 34444555533322 23333443333321111000 01111 1
Q ss_pred HHHHHHHHHHhhhHHH-----------------------HHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccc
Q psy7773 753 TILIIRRLHKVLRPFL-----------------------LRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGIL 809 (1281)
Q Consensus 753 ~~~~~~~L~~~l~~~~-----------------------lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~ 809 (1281)
.......++.++..++ ....+......+|. ......+|..+......
T Consensus 237 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 306 (555)
T 3tbk_A 237 ISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMAD----------KEEESRVCKALFLYTSH 306 (555)
T ss_dssp HHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSS----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccc----------hhhHHHHHHHHHHHHHH
Confidence 1112222222222211 11000000001111 11111112111100000
Q ss_pred cccCCc-cCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhcCCCcc--ccCCccccccchHHHHHHHhhhhhh
Q psy7773 810 LTDGSE-KGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNNTV--VSGPDIYRTSGKFELLDRILPKFKE 886 (1281)
Q Consensus 810 ~~~~~~-~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~K~~~L~~lL~~~~~ 886 (1281)
+..... ...............+..+-.-+.+..+ ......+...+...... .........++|+..|..+|..+..
T Consensus 307 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~ 385 (555)
T 3tbk_A 307 LRKYNDALIISEDAQMTDALNYLKAFFHDVREAAF-DETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYH 385 (555)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC------HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhccc-chHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhc
Confidence 000000 0000000000000000000000000000 00000000000000000 0001112357899999999988764
Q ss_pred --cCCeEEEEechHHHHHHHHHHHHHC------------CCcEEEEeCCCChHHHHHHHHhhcC-CCCCeEEEEEecccc
Q psy7773 887 --TKHRVLMFCQMTQLMTILEDYFIWR------------DFSYLRLDGTTKSEDRGELLRKFNE-PESKYFIFLLSTRAG 951 (1281)
Q Consensus 887 --~~~kvLIFsq~~~~ld~L~~~L~~~------------g~~~~~l~G~~~~~~R~~~i~~Fn~-~~~~~~v~LlsT~ag 951 (1281)
.++++||||+++.+++.|..+|... |..+..+||+++..+|..+++.|++ +... +||||+++
T Consensus 386 ~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~---vLvaT~~~ 462 (555)
T 3tbk_A 386 LKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNN---ILIATSVA 462 (555)
T ss_dssp HCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCS---EEEECCCT
T ss_pred cCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCee---EEEEcchh
Confidence 4589999999999999999999876 3455666779999999999999998 5555 58999999
Q ss_pred ccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHh
Q psy7773 952 GLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDEKVIQ 1022 (1281)
Q Consensus 952 g~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~~~~K~~l~~~vi~ 1022 (1281)
|+|||++.|++||+||+||||..|+||+|| |+.+.+.+|.|++.++.++. ......|..+.+..+.
T Consensus 463 ~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~-~~~~~~~e~~~~~~~~ 528 (555)
T 3tbk_A 463 DEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTSSADVIEK-EKANMIKEKIMNESIL 528 (555)
T ss_dssp TCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEESCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred hcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEcCCCHHHH-HHHhhHHHHHHHHHHH
Confidence 999999999999999999999999999999 67788999999999999888 4555566666666554
No 16
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=100.00 E-value=2.3e-34 Score=319.59 Aligned_cols=218 Identities=17% Similarity=0.182 Sum_probs=163.7
Q ss_pred CCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCC--CCCchHHHHHHHHHHHHhcCCccchh-hhHHHHHhhhc
Q psy7773 780 LPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKT--GEGGARALKNTIVQLRKLCNHPFMFQ-NIEEKYCQHIG 856 (1281)
Q Consensus 780 lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~Lrk~~~hp~l~~-~~~~~~~~~~~ 856 (1281)
-|.+.+++++|+||+.|+.+|+.+.............+.. ......++.+.+++||+|||||||+. +..+ .
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p------~ 93 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMP------K 93 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCC------S
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCC------c
Confidence 4899999999999999999999997643332221111111 11124578899999999999999983 1110 0
Q ss_pred CCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcC
Q psy7773 857 QNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNE 936 (1281)
Q Consensus 857 ~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~ 936 (1281)
..........++..||||.+|.++|..+.+.|||||||||++.++|+|+++|..+|++|+|+||++... +++ .
T Consensus 94 ~~~~~~~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~-~~k------~ 166 (328)
T 3hgt_A 94 SLITRDVPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS-AAA------A 166 (328)
T ss_dssp CSCSTTHHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-------------
T ss_pred cccccchhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh-hhh------c
Confidence 000011134567899999999999999999999999999999999999999999999999999995543 222 1
Q ss_pred CCCCeEEEEEeccccccccC-----cccCCEEEEeCCCCChhhh-hhHhHhHHhh--CCCCceEEEEEEeCCCHHHHHHH
Q psy7773 937 PESKYFIFLLSTRAGGLGLN-----LQAADTVIIFDSDWNPHQD-LQAQDRAHRI--GQKNEVRVLRLITVNSVEERILA 1008 (1281)
Q Consensus 937 ~~~~~~v~LlsT~agg~GlN-----L~~ad~VI~~D~~wnp~~~-~Qa~gR~~Ri--GQ~k~V~V~rli~~~tiEe~I~~ 1008 (1281)
.++.++|||+ |++||.|+| |.+||+||+||++|||+++ +||+.|+||+ ||+++|.||||++.+|||+.+++
T Consensus 167 ~~~~~~i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~ 245 (328)
T 3hgt_A 167 NDFSCTVHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLF 245 (328)
T ss_dssp -CCSEEEEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHH
T ss_pred ccCCceEEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHH
Confidence 2467888887 568888886 8999999999999999998 9999999999 78999999999999999999998
Q ss_pred HHH
Q psy7773 1009 AAR 1011 (1281)
Q Consensus 1009 ~~~ 1011 (1281)
.-.
T Consensus 246 ~~~ 248 (328)
T 3hgt_A 246 FGK 248 (328)
T ss_dssp HHH
T ss_pred ccC
Confidence 643
No 17
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.3e-33 Score=360.56 Aligned_cols=444 Identities=14% Similarity=0.134 Sum_probs=249.0
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhc---CCCCCEEEEeCCc-cHHHH-HHHHHHHC
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKK---KNLGPYLVIVPLS-TLSNW-VLEFEKWA 618 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~---~~~~~~LIV~P~s-~l~~W-~~E~~~~~ 618 (1281)
.+|+|||.+++.+++. +.++||+++||+|||++++.++..++... +..+++|||||.. ++.|| ..+|.+|+
T Consensus 6 ~~l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp -CCCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CCccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 3799999999999885 67899999999999999998887766443 2337899999986 66999 99999999
Q ss_pred CC-CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--------cccccCceeEEEEeCCccccccch---HHH
Q psy7773 619 PS-ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--------SVLSKIQWKCMIIDEGHRMKNHHC---KLT 686 (1281)
Q Consensus 619 p~-~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--------~~l~~~~w~~vIvDEaHr~kn~~s---~~~ 686 (1281)
+. +.+..+.|.......... .....+|+|+||+.|.... ..+....|++|||||||++.+... ...
T Consensus 82 ~~~~~v~~~~g~~~~~~~~~~--~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~ 159 (699)
T 4gl2_A 82 KKWYRVIGLSGDTQLKISFPE--VVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 159 (699)
T ss_dssp TTTSCEEEEC----CCCCHHH--HHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHH
T ss_pred CcCceEEEEeCCcchhhHHHh--hhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHH
Confidence 87 889999887543211111 1146899999999998643 234455899999999999864321 111
Q ss_pred HHHHhhh-------------ccCcEEEeecCCCCCCh-------hHHHHHHhhhcCCCCC----ChhHHHHHhcccccCC
Q psy7773 687 QTLNTFY-------------NSSHRVLLTGTPLQNKL-------PELWALLNFLLPSIFK----SCSTFEQWFNAPFATT 742 (1281)
Q Consensus 687 ~~l~~~~-------------~~~~rllLTgTPl~n~~-------~el~~ll~fl~p~~~~----~~~~f~~~f~~~~~~~ 742 (1281)
..+...+ ..+++++|||||..++. .++..++..+.+..+. ....+...+..|....
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~ 239 (699)
T 4gl2_A 160 HYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKF 239 (699)
T ss_dssp HHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEE
T ss_pred HHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEE
Confidence 1221111 44678999999998633 3445555566662222 1233344443332111
Q ss_pred cccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHHhhcCCCceEEEEEcCCCH-HHHHHHHHHHhcccccccCCccCCCCC
Q psy7773 743 GEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYIIKCDMSG-LQKLLYQHLHNRGILLTDGSEKGKTGE 821 (1281)
Q Consensus 743 ~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~-~q~~lY~~l~~~~~~~~~~~~~~~~~~ 821 (1281)
..............+..+...+..+ + .+.+. ..+.. .-..+...+........ ....
T Consensus 240 ~~~~~~~~~~~~~~l~~l~~~i~~~--------~--~~~~~------~~~g~~~~~~~~~~~~~~~~~~~------~~~~ 297 (699)
T 4gl2_A 240 AIADATREDPFKEKLLEIMTRIQTY--------C--QMSPM------SDFGTQPYEQWAIQMEKKAAKEG------NRKE 297 (699)
T ss_dssp EEEC-----CHHHHHHHHHHHHHHH--------H--TCCCC------SCSSSHHHHHHHHHHHHHHHHHT------CTTT
T ss_pred EEcccccCChHHHHHHHHHHHHHHH--------h--ccCcc------hhccchHHHHHHHHHHHHHHHhh------hhhh
Confidence 1000000000001111111111111 1 11110 00110 00000011111000000 0000
Q ss_pred CchHHHHHHHHHHHHhcCC-------ccchhhhHHHHHhhhcCC-------Cccc-------------------cCCccc
Q psy7773 822 GGARALKNTIVQLRKLCNH-------PFMFQNIEEKYCQHIGQN-------NTVV-------------------SGPDIY 868 (1281)
Q Consensus 822 ~~~~~~~~~l~~Lrk~~~h-------p~l~~~~~~~~~~~~~~~-------~~~~-------------------~~~~~~ 868 (1281)
......+........++.. .++............... .... ......
T Consensus 298 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 377 (699)
T 4gl2_A 298 RVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPE 377 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCC
Confidence 0000000000000000000 000000000000000000 0000 000001
Q ss_pred cccchHHHHHHHhhhhhhc---CCeEEEEechHHHHHHHHHHHHHC------CCcEEEEeCC--------CChHHHHHHH
Q psy7773 869 RTSGKFELLDRILPKFKET---KHRVLMFCQMTQLMTILEDYFIWR------DFSYLRLDGT--------TKSEDRGELL 931 (1281)
Q Consensus 869 ~~s~K~~~L~~lL~~~~~~---~~kvLIFsq~~~~ld~L~~~L~~~------g~~~~~l~G~--------~~~~~R~~~i 931 (1281)
..++|+..|..+|...... +.++||||+++.+++.|..+|... |+++..++|+ ++..+|..++
T Consensus 378 ~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~ 457 (699)
T 4gl2_A 378 YENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVI 457 (699)
T ss_dssp ----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHH
Confidence 1457788888888775442 789999999999999999999987 9999999999 9999999999
Q ss_pred HhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHHHH
Q psy7773 932 RKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAAR 1011 (1281)
Q Consensus 932 ~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~~~ 1011 (1281)
+.|+++... +||||.++|+|||++.+++||+||+||||..|.|++|||+|-| ..++.+...++.+........
T Consensus 458 ~~F~~g~~~---VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~~~~~~~~~~~~~~ 530 (699)
T 4gl2_A 458 SKFRTGKIN---LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAHSGSGVIERETVND 530 (699)
T ss_dssp HHHCC---C---CSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEESSSCSHHHHHHHH
T ss_pred HHHhcCCCc---EEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEeCCchHHHHHHHHH
Confidence 999986655 5899999999999999999999999999999999999976544 455556666666555544444
Q ss_pred HHHHHHHHHHh
Q psy7773 1012 YKLNMDEKVIQ 1022 (1281)
Q Consensus 1012 ~K~~l~~~vi~ 1022 (1281)
.+..+....+.
T Consensus 531 ~~~~~~~~~~~ 541 (699)
T 4gl2_A 531 FREKMMYKAIH 541 (699)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 18
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=5.2e-33 Score=343.64 Aligned_cols=347 Identities=15% Similarity=0.153 Sum_probs=250.8
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHH--CCC
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKW--APS 620 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~--~p~ 620 (1281)
.+|+|||..++.+++. +.++||+++||+|||++++.++..++... .+++|||||. +++.||..+|.+| +|.
T Consensus 112 ~~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~ 185 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (510)
T ss_dssp ECCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHC--SSEEEEEESSHHHHHHHHHHHHHTTSSCG
T ss_pred CCCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCC--CCeEEEEECcHHHHHHHHHHHHHhhcCCc
Confidence 3899999999999886 36789999999999999988887766432 3599999998 5669999999999 566
Q ss_pred CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEE
Q psy7773 621 ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVL 700 (1281)
Q Consensus 621 ~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rll 700 (1281)
..+..+.|....... .....+|+|+||+.+...... ....|++|||||||++.+.. ....+..+....++|+
T Consensus 186 ~~v~~~~~~~~~~~~-----~~~~~~I~i~T~~~l~~~~~~-~~~~~~liIiDE~H~~~~~~--~~~il~~~~~~~~~l~ 257 (510)
T 2oca_A 186 AMIKKIGGGASKDDK-----YKNDAPVVVGTWQTVVKQPKE-WFSQFGMMMNDECHLATGKS--ISSIISGLNNCMFKFG 257 (510)
T ss_dssp GGEEECGGGCCTTGG-----GCTTCSEEEEEHHHHTTSCGG-GGGGEEEEEEETGGGCCHHH--HHHHGGGCTTCCEEEE
T ss_pred cceEEEecCCccccc-----cccCCcEEEEeHHHHhhchhh-hhhcCCEEEEECCcCCCccc--HHHHHHhcccCcEEEE
Confidence 677777765322111 235789999999999876332 22379999999999998743 3444555546778999
Q ss_pred eecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHHhhcC
Q psy7773 701 LTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQL 780 (1281)
Q Consensus 701 LTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~l 780 (1281)
||||| .+...+++++..++.|..+..... . ... ...+
T Consensus 258 lSATp-~~~~~~~~~~~~~~~~~~~~~~~~-------------~---~~~--------------------------~~~l 294 (510)
T 2oca_A 258 LSGSL-RDGKANIMQYVGMFGEIFKPVTTS-------------K---LME--------------------------DGQV 294 (510)
T ss_dssp EESCG-GGCSSCHHHHHHHHCSEECCCCCC--------------------------------------------------
T ss_pred EEeCC-CCCcccHHHhHHhhCCeEEeeCHH-------------H---Hhh--------------------------CCcC
Confidence 99999 555566777777766644311000 0 000 0135
Q ss_pred CCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhcCCCc
Q psy7773 781 PEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNNT 860 (1281)
Q Consensus 781 P~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~ 860 (1281)
++.....+.+.++........ + ..... .+...+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~------------------~-~~~~~------~~~~~~~--------------------- 328 (510)
T 2oca_A 295 TELKINSIFLRYPDEFTTKLK------------------G-KTYQE------EIKIITG--------------------- 328 (510)
T ss_dssp -CCEEEEEEEECCHHHHHHHT------------------T-CCHHH------HHHHHHT---------------------
T ss_pred CCceEEEEeecCChHHhcccc------------------c-cchHH------HHHHHhc---------------------
Confidence 566666666766654331100 0 00000 0111111
Q ss_pred cccCCccccccchHHHHHHHhhhhhhc-CCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCC
Q psy7773 861 VVSGPDIYRTSGKFELLDRILPKFKET-KHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPES 939 (1281)
Q Consensus 861 ~~~~~~~~~~s~K~~~L~~lL~~~~~~-~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~ 939 (1281)
...|...+..++..+... +.++|||+. +..+..|...|...+.++..+||+++..+|..+++.|+++..
T Consensus 329 ---------~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~ 398 (510)
T 2oca_A 329 ---------LSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKG 398 (510)
T ss_dssp ---------CHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCS
T ss_pred ---------cHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCC
Confidence 124555666666665443 556777777 888888999999998899999999999999999999997655
Q ss_pred CeEEEEEec-cccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCC-ceEEEEEEeCCCHHHHH
Q psy7773 940 KYFIFLLST-RAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKN-EVRVLRLITVNSVEERI 1006 (1281)
Q Consensus 940 ~~~v~LlsT-~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k-~V~V~rli~~~tiEe~I 1006 (1281)
. +|++| .++++|||++.+++||++|++||+..+.|++||++|.|+.+ .|.||.++...++.+++
T Consensus 399 ~---vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~~~~~ 464 (510)
T 2oca_A 399 I---IIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPKS 464 (510)
T ss_dssp C---EEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBCCSS
T ss_pred C---EEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeecchhhhhhh
Confidence 4 58888 99999999999999999999999999999999999999987 69999999977755544
No 19
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=4.6e-33 Score=357.61 Aligned_cols=437 Identities=16% Similarity=0.171 Sum_probs=231.0
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCC--CCCEEEEeCC-ccHHHHHHHHHHHCC
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKN--LGPYLVIVPL-STLSNWVLEFEKWAP 619 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~--~~~~LIV~P~-s~l~~W~~E~~~~~p 619 (1281)
..+|+|||.+++.|++. +.++|++++||+|||++++.++...+..... .+++|||+|+ +++.||..++.++++
T Consensus 11 ~~~lr~~Q~~~i~~~l~----g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~ 86 (696)
T 2ykg_A 11 PFKPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFE 86 (696)
T ss_dssp --CCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCccHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhc
Confidence 45899999999999874 6789999999999999999888876654432 2689999997 777999999999987
Q ss_pred --CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhccc--cc-ccCceeEEEEeCCccccccchHHHHHHHhhh-
Q psy7773 620 --SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKS--VL-SKIQWKCMIIDEGHRMKNHHCKLTQTLNTFY- 693 (1281)
Q Consensus 620 --~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~--~l-~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~- 693 (1281)
++.+..+.|....+...... ....+|+|+||+.|..... .+ ....|++|||||||++.+.++ ....+..++
T Consensus 87 ~~~~~v~~~~g~~~~~~~~~~~--~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~-~~~i~~~~l~ 163 (696)
T 2ykg_A 87 RHGYRVTGISGATAENVPVEQI--VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHP-YNMIMFNYLD 163 (696)
T ss_dssp TTTCCEEEECSSSCSSSCHHHH--HHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCH-HHHHHHHHHH
T ss_pred cCCceEEEEeCCccccccHHHh--ccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCccc-HHHHHHHHHH
Confidence 67888888864321111110 1258999999999977533 22 345789999999999997764 233322221
Q ss_pred --------ccCcEEEeecCCCCCC-------hhHHHHHHhhhcCCCCCC----hhHHHHHhcccccCCccccc-CCHHHH
Q psy7773 694 --------NSSHRVLLTGTPLQNK-------LPELWALLNFLLPSIFKS----CSTFEQWFNAPFATTGEKVE-LNEEET 753 (1281)
Q Consensus 694 --------~~~~rllLTgTPl~n~-------~~el~~ll~fl~p~~~~~----~~~f~~~f~~~~~~~~~~~~-~~~~~~ 753 (1281)
...++|+|||||..++ +..++.++..+....+.+ ......+...|......... .....
T Consensus 164 ~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~f- 242 (696)
T 2ykg_A 164 QKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKF- 242 (696)
T ss_dssp HHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHH-
T ss_pred HhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChH-
Confidence 3478899999999654 344555555554443322 22333444333211000000 00000
Q ss_pred HHHHHHHHHhhhHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhc---ccccccCCccCCCCCCchHHHHHH
Q psy7773 754 ILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNR---GILLTDGSEKGKTGEGGARALKNT 830 (1281)
Q Consensus 754 ~~~~~~L~~~l~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 830 (1281)
...+..+..- ++.+...+... |... ..+..++.....|...... ....... ............+...
T Consensus 243 s~~~~~l~~~-----i~~l~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~ 312 (696)
T 2ykg_A 243 KYIIAQLMRD-----TESLAKRICKD-LENL---SQIQNREFGTQKYEQWIVTVQKACMVFQM-PDKDEESRICKALFLY 312 (696)
T ss_dssp HHHHHHHHHH-----HHHHHHHHSTT-GGGS---SSCCSCCSSSHHHHHHHHHHHHTSCC-------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHHHHHH-HHHh---hccccccccchhHHHHHHHHHHHHHHhhc-ccchhhhHHHHHHHHH
Confidence 0011111111 11112222111 1100 1111122122222221110 0000000 0000000001122223
Q ss_pred HHHHHHhcCCccchhhhH---------HHHHhhhcCCCccccC------------------CccccccchHHHHHHHhhh
Q psy7773 831 IVQLRKLCNHPFMFQNIE---------EKYCQHIGQNNTVVSG------------------PDIYRTSGKFELLDRILPK 883 (1281)
Q Consensus 831 l~~Lrk~~~hp~l~~~~~---------~~~~~~~~~~~~~~~~------------------~~~~~~s~K~~~L~~lL~~ 883 (1281)
...|++.. +|....... ..+............. ......++|+..|..+|..
T Consensus 313 ~~~l~~~~-~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~ 391 (696)
T 2ykg_A 313 TSHLRKYN-DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQE 391 (696)
T ss_dssp HHHHHHHH-HHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHh-HHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 33333322 232211000 0000000000000000 0000257899999999987
Q ss_pred hh--hcCCeEEEEechHHHHHHHHHHHHHCC----CcEEEEeC--------CCChHHHHHHHHhhcC-CCCCeEEEEEec
Q psy7773 884 FK--ETKHRVLMFCQMTQLMTILEDYFIWRD----FSYLRLDG--------TTKSEDRGELLRKFNE-PESKYFIFLLST 948 (1281)
Q Consensus 884 ~~--~~~~kvLIFsq~~~~ld~L~~~L~~~g----~~~~~l~G--------~~~~~~R~~~i~~Fn~-~~~~~~v~LlsT 948 (1281)
.. ..++++||||+++.+++.|..+|...| +++..++| +++..+|..+++.|++ +... +||||
T Consensus 392 ~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~---vLVaT 468 (696)
T 2ykg_A 392 EYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN---ILIAT 468 (696)
T ss_dssp HHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCS---CSEEE
T ss_pred HhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCcc---EEEEe
Confidence 64 367899999999999999999999998 89999954 9999999999999997 6655 58999
Q ss_pred cccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHH
Q psy7773 949 RAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEER 1005 (1281)
Q Consensus 949 ~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~ 1005 (1281)
+++|+|||++++++||+||+|||+..|.||+|| +|. +...+|.|++.+++++.
T Consensus 469 ~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 469 SVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVIEK 521 (696)
T ss_dssp ESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEESCHHHHHH
T ss_pred chhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCHHHH
Confidence 999999999999999999999999999999999 884 66788999998887664
No 20
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.98 E-value=5.5e-32 Score=340.11 Aligned_cols=354 Identities=13% Similarity=0.150 Sum_probs=216.7
Q ss_pred cCcccHHHHHHHHHHHHhhcCC-CCeEEecCCCCCHHHHHHHHHHHHHHhc------CCCCCEEEEeC-CccHHHHH-HH
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNN-LNGILADEMGLGKTVQTIALLTYLMEKK------KNLGPYLVIVP-LSTLSNWV-LE 613 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~-~~gILademGlGKTi~ai~ll~~l~~~~------~~~~~~LIV~P-~s~l~~W~-~E 613 (1281)
+..|+|||.+++.+++..+.++ .++||+++||+|||++++.++..++... ...+++||||| .+++.||. .+
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3589999999999998876655 4579999999999999999988887543 15579999999 56669999 88
Q ss_pred HHHHCCCCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc------cccccCceeEEEEeCCccccccchHHHH
Q psy7773 614 FEKWAPSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK------SVLSKIQWKCMIIDEGHRMKNHHCKLTQ 687 (1281)
Q Consensus 614 ~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~------~~l~~~~w~~vIvDEaHr~kn~~s~~~~ 687 (1281)
|..|.+. +..+.+. ......+|+|+||+.|.... ..+....|++|||||||++.+.....++
T Consensus 256 ~~~~~~~--~~~~~~~----------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~ 323 (590)
T 3h1t_A 256 FTPFGDA--RHKIEGG----------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWR 323 (590)
T ss_dssp CTTTCSS--EEECCC------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CH
T ss_pred HHhcchh--hhhhhcc----------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHH
Confidence 8877643 3333321 12356899999999997652 2344457999999999999875433344
Q ss_pred HHHhhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHH
Q psy7773 688 TLNTFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPF 767 (1281)
Q Consensus 688 ~l~~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 767 (1281)
.+...+...++++|||||..+...+++.++. +..+. .. +...+.
T Consensus 324 ~il~~~~~~~~l~lTATP~~~~~~~~~~~f~---~~~~~---------------------~~----------~~~~i~-- 367 (590)
T 3h1t_A 324 EILEYFEPAFQIGMTATPLREDNRDTYRYFG---NPIYT---------------------YS----------LRQGID-- 367 (590)
T ss_dssp HHHHHSTTSEEEEEESSCSCTTTHHHHHHSC---SCSEE---------------------EC----------HHHHHH--
T ss_pred HHHHhCCcceEEEeccccccccchhHHHHcC---CceEe---------------------cC----------HHHHhh--
Confidence 4445557788999999999887766555432 11110 00 000000
Q ss_pred HHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhh
Q psy7773 768 LLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNI 847 (1281)
Q Consensus 768 ~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~ 847 (1281)
...+++.....+..................... .+. ...|-....
T Consensus 368 ---------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~------~~~~~~~~~ 412 (590)
T 3h1t_A 368 ---------DGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGR--------------------EIP------DGEYQTKDF 412 (590)
T ss_dssp ---------HTSSCCEEEEEEEETTCC-------------------------------------------------CCSH
T ss_pred ---------CCccCCcEEEEeeeeeecccccccccccccccc--------------------ccc------cccCCHHHh
Confidence 012334334444433321111000000000000 000 000000000
Q ss_pred HHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhh---hcCCeEEEEechHHHHHHHHHHHHHCCCc--------EE
Q psy7773 848 EEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFK---ETKHRVLMFCQMTQLMTILEDYFIWRDFS--------YL 916 (1281)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~---~~~~kvLIFsq~~~~ld~L~~~L~~~g~~--------~~ 916 (1281)
. ..+....+...+...|..+. ..+.|+||||+....++.|...|...+.. +.
T Consensus 413 ~-----------------~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~ 475 (590)
T 3h1t_A 413 E-----------------RVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVA 475 (590)
T ss_dssp H-----------------HHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEE
T ss_pred h-----------------hHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEE
Confidence 0 00011123333333332221 34679999999999999999999876543 77
Q ss_pred EEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCC---CCceEE
Q psy7773 917 RLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQ---KNEVRV 993 (1281)
Q Consensus 917 ~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ---~k~V~V 993 (1281)
.++|.++. +|..+++.|++++.++.++|+||+++++|||++.+++||+++++||+..|.|++||++|.|+ +..+.|
T Consensus 476 ~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I 554 (590)
T 3h1t_A 476 RVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNI 554 (590)
T ss_dssp ECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEE
T ss_pred EEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEE
Confidence 89999863 69999999999877777889999999999999999999999999999999999999999995 556888
Q ss_pred EEEE
Q psy7773 994 LRLI 997 (1281)
Q Consensus 994 ~rli 997 (1281)
|.++
T Consensus 555 ~D~~ 558 (590)
T 3h1t_A 555 IDYT 558 (590)
T ss_dssp EECS
T ss_pred EecC
Confidence 8887
No 21
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.97 E-value=1.2e-30 Score=311.28 Aligned_cols=329 Identities=16% Similarity=0.235 Sum_probs=228.4
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHC---C
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWA---P 619 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~---p 619 (1281)
..|+|||.+++.+++. +.++|++++||+|||++++..+...+.......++|||||. .++.||..++.+|. |
T Consensus 29 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 104 (391)
T 1xti_A 29 EHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMP 104 (391)
T ss_dssp CSCCHHHHHHHHHHTT----TCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCT
T ss_pred CCCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCC
Confidence 3699999999998774 67899999999999999877776654333345689999998 55699999999886 4
Q ss_pred CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCccccccch---HHHHHHHhhhc
Q psy7773 620 SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNHHC---KLTQTLNTFYN 694 (1281)
Q Consensus 620 ~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~~s---~~~~~l~~~~~ 694 (1281)
+..+..+.|......... .......+|+|+||+.+.... ..+....|++|||||||++.+... .+...+.....
T Consensus 105 ~~~~~~~~g~~~~~~~~~-~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~ 183 (391)
T 1xti_A 105 NVKVAVFFGGLSIKKDEE-VLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 183 (391)
T ss_dssp TCCEEEECTTSCHHHHHH-HHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCS
T ss_pred CeEEEEEeCCCCHHHHHH-HHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCC
Confidence 778888888654332221 222345799999999997542 223345789999999999976422 22222322223
Q ss_pred cCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHH
Q psy7773 695 SSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKK 774 (1281)
Q Consensus 695 ~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~ 774 (1281)
..++++|||||-.. ..++ +. .++..|
T Consensus 184 ~~~~i~~SAT~~~~-~~~~---~~--------------~~~~~~------------------------------------ 209 (391)
T 1xti_A 184 EKQVMMFSATLSKE-IRPV---CR--------------KFMQDP------------------------------------ 209 (391)
T ss_dssp SSEEEEEESSCCST-HHHH---HH--------------HHCSSC------------------------------------
T ss_pred CceEEEEEeeCCHH-HHHH---HH--------------HHcCCC------------------------------------
Confidence 56789999998532 1111 00 000000
Q ss_pred HHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhh
Q psy7773 775 EVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQH 854 (1281)
Q Consensus 775 ~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~ 854 (1281)
.... +... . ...... + .+.+
T Consensus 210 ---------~~~~--~~~~---------------------~--~~~~~~-------------~-~~~~------------ 229 (391)
T 1xti_A 210 ---------MEIF--VDDE---------------------T--KLTLHG-------------L-QQYY------------ 229 (391)
T ss_dssp ---------EEEE--CCCC---------------------C--CCCCTT-------------C-EEEE------------
T ss_pred ---------eEEE--ecCc---------------------c--ccCccc-------------c-eEEE------------
Confidence 0000 0000 0 000000 0 0000
Q ss_pred hcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhh
Q psy7773 855 IGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKF 934 (1281)
Q Consensus 855 ~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~F 934 (1281)
.......|...|..++... .++++||||+....+..+..+|...|+.+..+||+++..+|..+++.|
T Consensus 230 -----------~~~~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f 296 (391)
T 1xti_A 230 -----------VKLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQF 296 (391)
T ss_dssp -----------EECCGGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHH
T ss_pred -----------EEcCchhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 0011234666677777654 567899999999999999999999999999999999999999999999
Q ss_pred cCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHHH
Q psy7773 935 NEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAA 1010 (1281)
Q Consensus 935 n~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~~ 1010 (1281)
+++... +|++|.++++|+|++.+++||+||+|||+..+.|++||++|.|+...+. .|++.. -+..++...
T Consensus 297 ~~~~~~---vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~--~~~~~~-~~~~~~~~~ 366 (391)
T 1xti_A 297 KDFQRR---ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAI--TFVSDE-NDAKILNDV 366 (391)
T ss_dssp HTTCCS---EEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEE--EEECSH-HHHHHHHHH
T ss_pred hcCCCc---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEE--EEEccc-chHHHHHHH
Confidence 987655 6999999999999999999999999999999999999999999766544 444432 234444443
No 22
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=5.7e-30 Score=302.24 Aligned_cols=313 Identities=19% Similarity=0.270 Sum_probs=223.1
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcc-HHHHHHHHHHHCC--C
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLST-LSNWVLEFEKWAP--S 620 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~-l~~W~~E~~~~~p--~ 620 (1281)
.+|+|||.+++.+++. .+.++|++.+||+|||++++..+..++. .....++|||||... ..||..++.++++ .
T Consensus 27 ~~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 102 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVN-ENNGIEAIILTPTRELAIQVADEIESLKGNKN 102 (367)
T ss_dssp CSCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSC-SSSSCCEEEECSCHHHHHHHHHHHHHHHCSSC
T ss_pred CCCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhc-ccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCC
Confidence 3799999999998875 3467899999999999998877766542 234468999999854 5999999999875 4
Q ss_pred CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhccc--ccccCceeEEEEeCCccccccc--hHHHHHHHhhhccC
Q psy7773 621 ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKS--VLSKIQWKCMIIDEGHRMKNHH--CKLTQTLNTFYNSS 696 (1281)
Q Consensus 621 ~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~--~l~~~~w~~vIvDEaHr~kn~~--s~~~~~l~~~~~~~ 696 (1281)
..+..+.|.......... ....+|+|+||+.+..... .+....|++|||||||++.+.. ..+...+..+....
T Consensus 103 ~~v~~~~~~~~~~~~~~~---~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~ 179 (367)
T 1hv8_A 103 LKIAKIYGGKAIYPQIKA---LKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDK 179 (367)
T ss_dssp CCEEEECTTSCHHHHHHH---HHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSC
T ss_pred ceEEEEECCcchHHHHhh---cCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCc
Confidence 566767766544332221 1257999999999876432 2334478999999999997654 23333443332456
Q ss_pred cEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHH
Q psy7773 697 HRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEV 776 (1281)
Q Consensus 697 ~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v 776 (1281)
+.++|||||... +..++. .+
T Consensus 180 ~~i~~SAT~~~~----~~~~~~--------------~~------------------------------------------ 199 (367)
T 1hv8_A 180 RILLFSATMPRE----ILNLAK--------------KY------------------------------------------ 199 (367)
T ss_dssp EEEEECSSCCHH----HHHHHH--------------HH------------------------------------------
T ss_pred eEEEEeeccCHH----HHHHHH--------------HH------------------------------------------
Confidence 779999998421 111100 00
Q ss_pred hhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhc
Q psy7773 777 ESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIG 856 (1281)
Q Consensus 777 ~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 856 (1281)
+... ..+..... .. ..+.+
T Consensus 200 ---~~~~--~~~~~~~~----------------------------~~--------------~~~~~-------------- 218 (367)
T 1hv8_A 200 ---MGDY--SFIKAKIN----------------------------AN--------------IEQSY-------------- 218 (367)
T ss_dssp ---CCSE--EEEECCSS----------------------------SS--------------SEEEE--------------
T ss_pred ---cCCC--eEEEecCC----------------------------CC--------------ceEEE--------------
Confidence 0000 00000000 00 00000
Q ss_pred CCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcC
Q psy7773 857 QNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNE 936 (1281)
Q Consensus 857 ~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~ 936 (1281)
.......|+..|..++. ..+.++||||+....++.+...|...|+.+..++|+++..+|..+++.|++
T Consensus 219 ---------~~~~~~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 286 (367)
T 1hv8_A 219 ---------VEVNENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQ 286 (367)
T ss_dssp ---------EECCGGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHT
T ss_pred ---------EEeChHHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHc
Confidence 00112346666666664 567889999999999999999999999999999999999999999999998
Q ss_pred CCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCC
Q psy7773 937 PESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNS 1001 (1281)
Q Consensus 937 ~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~t 1001 (1281)
+... +|++|.++++|+|++.+++||+||+|||+..+.|++||++|.|+...+ +.+++...
T Consensus 287 ~~~~---vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~ 346 (367)
T 1hv8_A 287 KKIR---ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKA--ISIINRRE 346 (367)
T ss_dssp TSSS---EEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEE--EEEECTTS
T ss_pred CCCe---EEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEE--EEEEcHHH
Confidence 6555 589999999999999999999999999999999999999999987655 44455543
No 23
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.97 E-value=7.9e-30 Score=305.13 Aligned_cols=317 Identities=17% Similarity=0.221 Sum_probs=223.5
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc-cHHHHHHHHHHHCC--CC
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS-TLSNWVLEFEKWAP--SA 621 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s-~l~~W~~E~~~~~p--~~ 621 (1281)
.|+|||.+++.+++. +.++|++.+||+|||++++..+...+.......++|||||.. ++.||...+.++++ +.
T Consensus 43 ~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 118 (400)
T 1s2m_A 43 KPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGI 118 (400)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCc
Confidence 699999999999885 567999999999999998777766543333455899999985 55899999999986 45
Q ss_pred cEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCccccccch-HHHHHHHhhh-ccCc
Q psy7773 622 NVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNHHC-KLTQTLNTFY-NSSH 697 (1281)
Q Consensus 622 ~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~~s-~~~~~l~~~~-~~~~ 697 (1281)
.+..+.|.......... .....+|+|+|++.+.... ..+...++++|||||||++.+... .....+...+ ...+
T Consensus 119 ~~~~~~g~~~~~~~~~~--~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~ 196 (400)
T 1s2m_A 119 SCMVTTGGTNLRDDILR--LNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQ 196 (400)
T ss_dssp CEEEECSSSCHHHHHHH--TTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCE
T ss_pred eEEEEeCCcchHHHHHH--hcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCce
Confidence 67777776544433222 2356899999999986542 223334689999999999876542 1222222222 3457
Q ss_pred EEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHHh
Q psy7773 698 RVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVE 777 (1281)
Q Consensus 698 rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~ 777 (1281)
.++||||+-. .+...+ ..+
T Consensus 197 ~i~lSAT~~~----~~~~~~--------------~~~------------------------------------------- 215 (400)
T 1s2m_A 197 SLLFSATFPL----TVKEFM--------------VKH------------------------------------------- 215 (400)
T ss_dssp EEEEESCCCH----HHHHHH--------------HHH-------------------------------------------
T ss_pred EEEEEecCCH----HHHHHH--------------HHH-------------------------------------------
Confidence 7999999631 110000 000
Q ss_pred hcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhcC
Q psy7773 778 SQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQ 857 (1281)
Q Consensus 778 ~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~ 857 (1281)
+.......+...+ .... + .+
T Consensus 216 --~~~~~~~~~~~~~---------------------------~~~~-------------~-~~----------------- 235 (400)
T 1s2m_A 216 --LHKPYEINLMEEL---------------------------TLKG-------------I-TQ----------------- 235 (400)
T ss_dssp --CSSCEEESCCSSC---------------------------BCTT-------------E-EE-----------------
T ss_pred --cCCCeEEEecccc---------------------------ccCC-------------c-ee-----------------
Confidence 0000000000000 0000 0 00
Q ss_pred CCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCC
Q psy7773 858 NNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEP 937 (1281)
Q Consensus 858 ~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~ 937 (1281)
.........|+..|..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++
T Consensus 236 ------~~~~~~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 307 (400)
T 1s2m_A 236 ------YYAFVEERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQG 307 (400)
T ss_dssp ------EEEECCGGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred ------EEEEechhhHHHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcC
Confidence 000112245667777777653 456899999999999999999999999999999999999999999999986
Q ss_pred CCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCC
Q psy7773 938 ESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNS 1001 (1281)
Q Consensus 938 ~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~t 1001 (1281)
... +|++|.++++|+|++.+++||+||+|||+..+.|++||++|.|+.. .++.|++.+.
T Consensus 308 ~~~---vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~l~~~~~ 366 (400)
T 1s2m_A 308 KVR---TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG--LAINLINWND 366 (400)
T ss_dssp SSS---EEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCE--EEEEEECGGG
T ss_pred CCc---EEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCc--eEEEEeccch
Confidence 655 6999999999999999999999999999999999999999999765 4555666553
No 24
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.97 E-value=5.2e-30 Score=307.78 Aligned_cols=320 Identities=16% Similarity=0.228 Sum_probs=223.6
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc-cHHHHHHHHHHHCCC--
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS-TLSNWVLEFEKWAPS-- 620 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s-~l~~W~~E~~~~~p~-- 620 (1281)
..|+|||.+++.+++. +.++|++.+||+|||++++..+...+.......++|||||.. +..||..++.+|+..
T Consensus 58 ~~~~~~Q~~ai~~i~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 133 (410)
T 2j0s_A 58 EKPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMN 133 (410)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Confidence 3699999999999874 678999999999999998877766543334557899999986 559999999998753
Q ss_pred CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCccccccc--hHHHHHHHhhhccC
Q psy7773 621 ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNHH--CKLTQTLNTFYNSS 696 (1281)
Q Consensus 621 ~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~~--s~~~~~l~~~~~~~ 696 (1281)
..+..+.|........... ....+|+|+|++.+.... ..+....|++|||||||++.+.. ..+...+..+....
T Consensus 134 ~~~~~~~g~~~~~~~~~~~--~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~ 211 (410)
T 2j0s_A 134 VQCHACIGGTNVGEDIRKL--DYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT 211 (410)
T ss_dssp CCEEEECTTSCHHHHHHHH--HHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTC
T ss_pred eEEEEEECCCCHHHHHHHh--hcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCc
Confidence 5566666654433322211 235689999999886542 23444578999999999987654 23333343332456
Q ss_pred cEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHH
Q psy7773 697 HRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEV 776 (1281)
Q Consensus 697 ~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v 776 (1281)
+.++|||||-. ++..++.... ..|.... ... .
T Consensus 212 ~~i~~SAT~~~----~~~~~~~~~~--------------~~~~~~~-----~~~-------------------------~ 243 (410)
T 2j0s_A 212 QVVLISATLPH----EILEMTNKFM--------------TDPIRIL-----VKR-------------------------D 243 (410)
T ss_dssp EEEEEESCCCH----HHHTTGGGTC--------------SSCEEEC-----CCG-------------------------G
T ss_pred eEEEEEcCCCH----HHHHHHHHHc--------------CCCEEEE-----ecC-------------------------c
Confidence 78999999832 1111111000 0000000 000 0
Q ss_pred hhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhc
Q psy7773 777 ESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIG 856 (1281)
Q Consensus 777 ~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 856 (1281)
...++......+.+
T Consensus 244 ~~~~~~~~~~~~~~------------------------------------------------------------------ 257 (410)
T 2j0s_A 244 ELTLEGIKQFFVAV------------------------------------------------------------------ 257 (410)
T ss_dssp GCSCTTEEEEEEEE------------------------------------------------------------------
T ss_pred cccCCCceEEEEEe------------------------------------------------------------------
Confidence 00000000001100
Q ss_pred CCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcC
Q psy7773 857 QNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNE 936 (1281)
Q Consensus 857 ~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~ 936 (1281)
.....|+..|..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|++
T Consensus 258 -----------~~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 324 (410)
T 2j0s_A 258 -----------EREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS 324 (410)
T ss_dssp -----------SSTTHHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHH
T ss_pred -----------CcHHhHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHC
Confidence 01123566666666554 34589999999999999999999999999999999999999999999998
Q ss_pred CCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCC
Q psy7773 937 PESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNS 1001 (1281)
Q Consensus 937 ~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~t 1001 (1281)
+... +|+||+++++|||++.+++||+||+|||+..|.|++||++|.|++. .++.|++...
T Consensus 325 g~~~---vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~~ 384 (410)
T 2j0s_A 325 GASR---VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKG--VAINFVKNDD 384 (410)
T ss_dssp TSSC---EEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCE--EEEEEEEGGG
T ss_pred CCCC---EEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCce--EEEEEecHHH
Confidence 6655 5899999999999999999999999999999999999999999765 4555666543
No 25
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.97 E-value=2.1e-29 Score=293.81 Aligned_cols=313 Identities=17% Similarity=0.202 Sum_probs=213.3
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHCC--C
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWAP--S 620 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~p--~ 620 (1281)
..|+|||.+++.++.. +.+++++.+||+|||++++..+... ..++|||||. +++.||..++.+|.+ +
T Consensus 15 ~~l~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 84 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQ----GKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVASHIRDIGRYMD 84 (337)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHhc----CCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHHHHHHHhhhcC
Confidence 4799999999998873 6789999999999999887665442 3589999998 455999999999875 4
Q ss_pred CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCccccccc--hHHHHHHHhhhccC
Q psy7773 621 ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNHH--CKLTQTLNTFYNSS 696 (1281)
Q Consensus 621 ~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~~--s~~~~~l~~~~~~~ 696 (1281)
..+..+.|.......... ....+|+|+|++.+.... ..+....|++|||||||++.+.. ..+...+.......
T Consensus 85 ~~~~~~~~~~~~~~~~~~---~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~ 161 (337)
T 2z0m_A 85 TKVAEVYGGMPYKAQINR---VRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRK 161 (337)
T ss_dssp CCEEEECTTSCHHHHHHH---HTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCS
T ss_pred CcEEEEECCcchHHHHhh---cCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCccc
Confidence 667777776443332221 134899999999987642 23334578999999999987543 23333343332344
Q ss_pred cEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHH
Q psy7773 697 HRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEV 776 (1281)
Q Consensus 697 ~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v 776 (1281)
..++|||||-.. +...+. .++..+... ..
T Consensus 162 ~~~~~SAT~~~~----~~~~~~--------------~~~~~~~~~-----~~---------------------------- 190 (337)
T 2z0m_A 162 ITGLFSATIPEE----IRKVVK--------------DFITNYEEI-----EA---------------------------- 190 (337)
T ss_dssp EEEEEESCCCHH----HHHHHH--------------HHSCSCEEE-----EC----------------------------
T ss_pred EEEEEeCcCCHH----HHHHHH--------------HhcCCceee-----ec----------------------------
Confidence 556889998321 111110 000000000 00
Q ss_pred hhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhc
Q psy7773 777 ESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIG 856 (1281)
Q Consensus 777 ~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 856 (1281)
....+......+.+.
T Consensus 191 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 205 (337)
T 2z0m_A 191 CIGLANVEHKFVHVK----------------------------------------------------------------- 205 (337)
T ss_dssp SGGGGGEEEEEEECS-----------------------------------------------------------------
T ss_pred ccccCCceEEEEEeC-----------------------------------------------------------------
Confidence 000000000011000
Q ss_pred CCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcC
Q psy7773 857 QNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNE 936 (1281)
Q Consensus 857 ~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~ 936 (1281)
.........+. ...+.++||||+....++.+...|. .+..++|+++..+|..+++.|++
T Consensus 206 ---------------~~~~~~~~~~~--~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~ 264 (337)
T 2z0m_A 206 ---------------DDWRSKVQALR--ENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFRE 264 (337)
T ss_dssp ---------------SSSHHHHHHHH--TCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHT
T ss_pred ---------------hHHHHHHHHHH--hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHc
Confidence 00000111111 1356789999999999999998886 67899999999999999999998
Q ss_pred CCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHHH
Q psy7773 937 PESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAA 1010 (1281)
Q Consensus 937 ~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~~ 1010 (1281)
+... +|+||.++++|+|++.+++||+||+|||+..+.|++||++|.|+...+.+|.. ....+...|....
T Consensus 265 ~~~~---vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 265 GEYD---MLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp TSCS---EEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred CCCc---EEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 7655 69999999999999999999999999999999999999999999888877776 5555555555443
No 26
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.96 E-value=1.1e-29 Score=282.09 Aligned_cols=215 Identities=17% Similarity=0.194 Sum_probs=159.0
Q ss_pred CCCceEEEEEeCCCHHHHHHHHHHHHhhhhhccccccCCCCC--CchHHHHHHHHHHHHHcCCCcCchhhHHHHhhhhcC
Q psy7773 77 LPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGE--GGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQ 154 (1281)
Q Consensus 77 LP~k~~~~v~v~ls~~Q~~~Y~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~Lr~~~~hP~l~~~~~~~~~~~~~~ 154 (1281)
-|++.+++++|+||+.|+++|+.+.......+.....+.... .....+.+.+++||++||||+|+.. +...
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d-------~~~p 92 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLID-------HYMP 92 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCC-------TTCC
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhcc-------ccCC
Confidence 399999999999999999999999754322222111111111 1235678899999999999999832 1101
Q ss_pred CCcc--ccCCcccccCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhc
Q psy7773 155 NNTV--VSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFN 232 (1281)
Q Consensus 155 ~~~~--~~~~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~ 232 (1281)
.... .....++..|||+.+|..+|..+.+.|+|||||||++.++++|+.+|...|+.|++++|++... +++.
T Consensus 93 ~~~~~~~~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~-~~k~----- 166 (328)
T 3hgt_A 93 KSLITRDVPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS-AAAA----- 166 (328)
T ss_dssp SCSCSTTHHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------
T ss_pred ccccccchhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh-hhhc-----
Confidence 0100 0122356789999999999999999999999999999999999999999999999999996543 2221
Q ss_pred CCCCCceEEEEeccccccCCC-----CCCCCEEEEeCCCCCcchh-hHHhHhhhhc--CCCCeEEEEEEEeccchHHHHH
Q psy7773 233 EPESKYFIFLLSTRAGGLGLN-----LQAADTVIIFDSDWNPHQD-LQAQDRAHRI--GQKNEVRVLRLITVNSVEERIL 304 (1281)
Q Consensus 233 ~~~~~~~vll~st~~~~~Gln-----L~~a~~vi~~d~~wnp~~~-~Qa~gR~~R~--Gq~~~V~v~~l~~~~Tiee~i~ 304 (1281)
..+.+.++|+ |.+||.|+| |+.|++||+||++|||+.. .||+.|+||+ ||+++|.||||++.+|||+.++
T Consensus 167 -~~~~~~i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l 244 (328)
T 3hgt_A 167 -NDFSCTVHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRL 244 (328)
T ss_dssp --CCSEEEEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHH
T ss_pred -ccCCceEEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHH
Confidence 1234677777 568888886 8999999999999999998 8999999999 6889999999999999999998
Q ss_pred HH
Q psy7773 305 AA 306 (1281)
Q Consensus 305 ~~ 306 (1281)
..
T Consensus 245 ~~ 246 (328)
T 3hgt_A 245 FF 246 (328)
T ss_dssp HH
T ss_pred Hc
Confidence 75
No 27
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.96 E-value=9.4e-29 Score=294.93 Aligned_cols=312 Identities=16% Similarity=0.229 Sum_probs=215.5
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc-cHHHHHHHHHHHCC--C
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS-TLSNWVLEFEKWAP--S 620 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s-~l~~W~~E~~~~~p--~ 620 (1281)
..|+|||.+++.+++.. ++.++|++.+||+|||++++..+...+......+++|||||.. ++.||...+.++.. .
T Consensus 26 ~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 103 (395)
T 3pey_A 26 QKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTK 103 (395)
T ss_dssp CSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccC
Confidence 47999999999988742 3478899999999999998877766554444556899999986 45999999999874 4
Q ss_pred CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCccccccch--HHHHHHHhhh-cc
Q psy7773 621 ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNHHC--KLTQTLNTFY-NS 695 (1281)
Q Consensus 621 ~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~~s--~~~~~l~~~~-~~ 695 (1281)
..+..+.|.... .......+|+|+|++.+.... ..+...+|++|||||||++.+... .....+.... ..
T Consensus 104 ~~~~~~~~~~~~------~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~ 177 (395)
T 3pey_A 104 ITSQLIVPDSFE------KNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKD 177 (395)
T ss_dssp CCEEEESTTSSC------TTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTT
T ss_pred eeEEEEecCchh------hhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCC
Confidence 455555554211 112346899999999987542 233344789999999999875322 2222222222 34
Q ss_pred CcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHH
Q psy7773 696 SHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKE 775 (1281)
Q Consensus 696 ~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~ 775 (1281)
.+.++|||||-. .+..++..+.+. +.. ..... .
T Consensus 178 ~~~i~~SAT~~~----~~~~~~~~~~~~--------------~~~-----~~~~~-----------------------~- 210 (395)
T 3pey_A 178 TQLVLFSATFAD----AVRQYAKKIVPN--------------ANT-----LELQT-----------------------N- 210 (395)
T ss_dssp CEEEEEESCCCH----HHHHHHHHHSCS--------------CEE-----ECCCG-----------------------G-
T ss_pred cEEEEEEecCCH----HHHHHHHHhCCC--------------CeE-----EEccc-----------------------c-
Confidence 577899999831 111111111000 000 00000 0
Q ss_pred HhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhh
Q psy7773 776 VESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHI 855 (1281)
Q Consensus 776 v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~ 855 (1281)
....+......+.+
T Consensus 211 -~~~~~~~~~~~~~~----------------------------------------------------------------- 224 (395)
T 3pey_A 211 -EVNVDAIKQLYMDC----------------------------------------------------------------- 224 (395)
T ss_dssp -GCSCTTEEEEEEEC-----------------------------------------------------------------
T ss_pred -ccccccccEEEEEc-----------------------------------------------------------------
Confidence 00000000000000
Q ss_pred cCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhc
Q psy7773 856 GQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFN 935 (1281)
Q Consensus 856 ~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn 935 (1281)
.....|+..+..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+
T Consensus 225 ------------~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 290 (395)
T 3pey_A 225 ------------KNEADKFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFR 290 (395)
T ss_dssp ------------SSHHHHHHHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH
T ss_pred ------------CchHHHHHHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHH
Confidence 01123455555555443 4578999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEEeccccccccCcccCCEEEEeCCCC------ChhhhhhHhHhHHhhCCCCceEE
Q psy7773 936 EPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDW------NPHQDLQAQDRAHRIGQKNEVRV 993 (1281)
Q Consensus 936 ~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~w------np~~~~Qa~gR~~RiGQ~k~V~V 993 (1281)
++... +|+||.++++|||++++++||+||+|| |+..+.|++||++|.|+...+.+
T Consensus 291 ~g~~~---vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~ 351 (395)
T 3pey_A 291 EGRSK---VLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAIS 351 (395)
T ss_dssp TTSCC---EEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEE
T ss_pred CCCCC---EEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEE
Confidence 86655 599999999999999999999999999 99999999999999997654433
No 28
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.96 E-value=2.7e-29 Score=301.81 Aligned_cols=320 Identities=17% Similarity=0.227 Sum_probs=214.4
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc-cHHHHHHHHHHHCC--C
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS-TLSNWVLEFEKWAP--S 620 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s-~l~~W~~E~~~~~p--~ 620 (1281)
..|+|||.+++.+++. +.++|++.+||+|||++++..+...+......+++|||||.. +..||..++.+++. +
T Consensus 61 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 136 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG 136 (414)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSC
T ss_pred CCCCHHHHHHhHHHhC----CCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccC
Confidence 4799999999988774 667999999999999998777766554444567899999985 55999999999863 4
Q ss_pred CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCccccccc--hHHHHHHHhhhccC
Q psy7773 621 ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNHH--CKLTQTLNTFYNSS 696 (1281)
Q Consensus 621 ~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~~--s~~~~~l~~~~~~~ 696 (1281)
..+..+.|......... .......+|+|+|++.|.... ..+....+++|||||||++.+.. ..+...+..+....
T Consensus 137 ~~~~~~~~~~~~~~~~~-~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 215 (414)
T 3eiq_A 137 ASCHACIGGTNVRAEVQ-KLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT 215 (414)
T ss_dssp CCEEECCCCTTHHHHHH-HHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTC
T ss_pred ceEEEEECCcchHHHHH-HHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCC
Confidence 55666666544433222 223467899999999986643 22344468999999999986443 34444554443456
Q ss_pred cEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHH
Q psy7773 697 HRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEV 776 (1281)
Q Consensus 697 ~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v 776 (1281)
+.++|||||-. ++..++...
T Consensus 216 ~~i~~SAT~~~----~~~~~~~~~-------------------------------------------------------- 235 (414)
T 3eiq_A 216 QVVLLSATMPS----DVLEVTKKF-------------------------------------------------------- 235 (414)
T ss_dssp EEEEECSCCCH----HHHHHHTTT--------------------------------------------------------
T ss_pred eEEEEEEecCH----HHHHHHHHH--------------------------------------------------------
Confidence 77999999831 111111100
Q ss_pred hhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhc
Q psy7773 777 ESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIG 856 (1281)
Q Consensus 777 ~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 856 (1281)
+..... +.+.. . ..... ...+.+.
T Consensus 236 ---~~~~~~--~~~~~---------------------~---~~~~~--------------~~~~~~~------------- 259 (414)
T 3eiq_A 236 ---MRDPIR--ILVKK---------------------E---ELTLE--------------GIRQFYI------------- 259 (414)
T ss_dssp ---CSSCEE--ECCCC---------------------C---CCCTT--------------SCCEEEE-------------
T ss_pred ---cCCCEE--EEecC---------------------C---ccCCC--------------CceEEEE-------------
Confidence 000000 00000 0 00000 0000000
Q ss_pred CCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcC
Q psy7773 857 QNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNE 936 (1281)
Q Consensus 857 ~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~ 936 (1281)
.......|+..|..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|++
T Consensus 260 ---------~~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~ 328 (414)
T 3eiq_A 260 ---------NVEREEWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRS 328 (414)
T ss_dssp ---------ECSSSTTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSC
T ss_pred ---------EeChHHhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHc
Confidence 0011234778888877665 45689999999999999999999999999999999999999999999998
Q ss_pred CCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCC
Q psy7773 937 PESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVN 1000 (1281)
Q Consensus 937 ~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~ 1000 (1281)
+... +|++|.++++|||++.+++||+||+|||+..|.|++||++|.|+.. .+|.|++..
T Consensus 329 g~~~---vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~ 387 (414)
T 3eiq_A 329 GSSR---VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG--VAINMVTEE 387 (414)
T ss_dssp C------CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC---------CEEEEECST
T ss_pred CCCc---EEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCc--eEEEEEcHH
Confidence 6544 5999999999999999999999999999999999999999999765 455566655
No 29
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.96 E-value=3.8e-28 Score=292.98 Aligned_cols=315 Identities=14% Similarity=0.168 Sum_probs=218.9
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC-----CCCCEEEEeCCc-cHHHHHHHHHHH
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKK-----NLGPYLVIVPLS-TLSNWVLEFEKW 617 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~-----~~~~~LIV~P~s-~l~~W~~E~~~~ 617 (1281)
..|+|+|..++..++ .+.+.|++.+||+|||++++..+...+.... ....+|||||.. +..||..++.++
T Consensus 77 ~~pt~iQ~~ai~~i~----~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 152 (434)
T 2db3_A 77 KIPTPIQKCSIPVIS----SGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKF 152 (434)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh----cCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHH
Confidence 479999999999876 4778999999999999987765554443322 234799999985 559999999998
Q ss_pred CC--CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCccccccc--hHHHHHHHh
Q psy7773 618 AP--SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNHH--CKLTQTLNT 691 (1281)
Q Consensus 618 ~p--~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~~--s~~~~~l~~ 691 (1281)
+. .+.+.++.|......... ......+|+|+|++.|.... ..+...++++|||||||++.... ..+..++..
T Consensus 153 ~~~~~~~~~~~~gg~~~~~~~~--~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~ 230 (434)
T 2db3_A 153 AFESYLKIGIVYGGTSFRHQNE--CITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTH 230 (434)
T ss_dssp TTTSSCCCCEECTTSCHHHHHH--HHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHC
T ss_pred hccCCcEEEEEECCCCHHHHHH--HhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHh
Confidence 74 345555555443332211 12356899999999997642 22334478999999999987643 333444433
Q ss_pred h--hccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHH
Q psy7773 692 F--YNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLL 769 (1281)
Q Consensus 692 ~--~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~l 769 (1281)
+ ....+.+++|||+- .++..+....
T Consensus 231 ~~~~~~~q~l~~SAT~~----~~~~~~~~~~------------------------------------------------- 257 (434)
T 2db3_A 231 VTMRPEHQTLMFSATFP----EEIQRMAGEF------------------------------------------------- 257 (434)
T ss_dssp TTSCSSCEEEEEESCCC----HHHHHHHHTT-------------------------------------------------
T ss_pred cCCCCCceEEEEeccCC----HHHHHHHHHh-------------------------------------------------
Confidence 2 23467899999972 1111111100
Q ss_pred HHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHH
Q psy7773 770 RRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEE 849 (1281)
Q Consensus 770 RR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~ 849 (1281)
+.......+ ... . ... .. + .+.
T Consensus 258 ----------l~~~~~i~~--~~~------------------~-----~~~-~~-------------i-~~~-------- 279 (434)
T 2db3_A 258 ----------LKNYVFVAI--GIV------------------G-----GAC-SD-------------V-KQT-------- 279 (434)
T ss_dssp ----------CSSCEEEEE--SST------------------T-----CCC-TT-------------E-EEE--------
T ss_pred ----------ccCCEEEEe--ccc------------------c-----ccc-cc-------------c-ceE--------
Confidence 111110000 000 0 000 00 0 000
Q ss_pred HHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHH
Q psy7773 850 KYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGE 929 (1281)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~ 929 (1281)
...+....|...|..+|... +.++||||+....++.|..+|...|+++..+||+++..+|..
T Consensus 280 ---------------~~~~~~~~k~~~l~~~l~~~---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~ 341 (434)
T 2db3_A 280 ---------------IYEVNKYAKRSKLIEILSEQ---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQ 341 (434)
T ss_dssp ---------------EEECCGGGHHHHHHHHHHHC---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHH
T ss_pred ---------------EEEeCcHHHHHHHHHHHHhC---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHH
Confidence 00111234666666666553 345999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEe
Q psy7773 930 LLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLIT 998 (1281)
Q Consensus 930 ~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~ 998 (1281)
+++.|+++... +|+||+++++|||++.+++||+||+||++..|.||+||++|.|++..+ +.|++
T Consensus 342 ~l~~F~~g~~~---vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a--~~~~~ 405 (434)
T 2db3_A 342 ALRDFKNGSMK---VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRA--TSFFD 405 (434)
T ss_dssp HHHHHHTSSCS---EEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEE--EEEEC
T ss_pred HHHHHHcCCCc---EEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEE--EEEEe
Confidence 99999987655 699999999999999999999999999999999999999999986544 44455
No 30
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.96 E-value=1.1e-29 Score=303.14 Aligned_cols=318 Identities=15% Similarity=0.214 Sum_probs=115.0
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHCC--C
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWAP--S 620 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~p--~ 620 (1281)
.+|+|||.+++.+++. +.+++++.+||+|||++++..+...+......+++|||||. .+..||..++.++++ +
T Consensus 42 ~~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 117 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 117 (394)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 4899999999999885 56799999999999999766665554344445689999998 555999999999875 4
Q ss_pred CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCcccccc--chHHHHHHHhhhccC
Q psy7773 621 ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNH--HCKLTQTLNTFYNSS 696 (1281)
Q Consensus 621 ~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~--~s~~~~~l~~~~~~~ 696 (1281)
..+..+.|........... ...+|+|+|++.+.... ..+....|++|||||||++... ...+...+..+....
T Consensus 118 ~~~~~~~g~~~~~~~~~~~---~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~ 194 (394)
T 1fuu_A 118 IKVHACIGGTSFVEDAEGL---RDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT 194 (394)
T ss_dssp CCEEEECSSCCHHHHHHHH---HHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred eeEEEEeCCCchHHHHhhc---CCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCc
Confidence 6777777764433222111 14789999999986542 2333457999999999998543 333444444433456
Q ss_pred cEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHH
Q psy7773 697 HRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEV 776 (1281)
Q Consensus 697 ~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v 776 (1281)
++++|||||-. ++..++. .++..|.
T Consensus 195 ~~i~~SAT~~~----~~~~~~~--------------~~~~~~~------------------------------------- 219 (394)
T 1fuu_A 195 QVVLLSATMPN----DVLEVTT--------------KFMRNPV------------------------------------- 219 (394)
T ss_dssp EEEEECSSCCH----HHHHHHH--------------HHCCSCE-------------------------------------
T ss_pred eEEEEEEecCH----HHHHHHH--------------HhcCCCe-------------------------------------
Confidence 78999999842 1111110 1111110
Q ss_pred hhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhc
Q psy7773 777 ESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIG 856 (1281)
Q Consensus 777 ~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 856 (1281)
...+ ...... ... + . +-+..
T Consensus 220 --------~~~~--~~~~~~---~~~------------------------~-------~----~~~~~------------ 239 (394)
T 1fuu_A 220 --------RILV--KKDELT---LEG------------------------I-------K----QFYVN------------ 239 (394)
T ss_dssp --------EEEE--CC----------------------------------------------------------------
T ss_pred --------EEEe--cCcccc---CCC------------------------c-------e----EEEEE------------
Confidence 0000 000000 000 0 0 00000
Q ss_pred CCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcC
Q psy7773 857 QNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNE 936 (1281)
Q Consensus 857 ~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~ 936 (1281)
......|...|..++... .+.++||||+....++.+...|...|+.+..++|+++..+|..+++.|++
T Consensus 240 ----------~~~~~~~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 307 (394)
T 1fuu_A 240 ----------VEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS 307 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------cCchhhHHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHC
Confidence 000011334444444432 35689999999999999999999999999999999999999999999987
Q ss_pred CCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCC
Q psy7773 937 PESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVN 1000 (1281)
Q Consensus 937 ~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~ 1000 (1281)
+... +|+||.++++|+|++.+++||+||+|||+..+.|++||++|.|+...+.+ |++..
T Consensus 308 ~~~~---vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~--~~~~~ 366 (394)
T 1fuu_A 308 GSSR---ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAIN--FVTNE 366 (394)
T ss_dssp ----------------------------------------------------------------
T ss_pred CCCc---EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEE--EEchh
Confidence 6544 58999999999999999999999999999999999999999998765444 44443
No 31
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.96 E-value=1.2e-27 Score=287.94 Aligned_cols=319 Identities=16% Similarity=0.195 Sum_probs=216.5
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC------------------CCCCEEEEeCCc
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKK------------------NLGPYLVIVPLS 605 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~------------------~~~~~LIV~P~s 605 (1281)
..|+|+|..++..++ .+.++|+..+||+|||++++..+...+...+ ....+|||||..
T Consensus 36 ~~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~ 111 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIK----EKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTR 111 (417)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSH
T ss_pred CCCCHHHHHHHHHHc----cCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcH
Confidence 479999999998766 4678999999999999986655444332222 114699999985
Q ss_pred -cHHHHHHHHHHHCC--CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhccc--ccccCceeEEEEeCCccccc
Q psy7773 606 -TLSNWVLEFEKWAP--SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKS--VLSKIQWKCMIIDEGHRMKN 680 (1281)
Q Consensus 606 -~l~~W~~E~~~~~p--~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~--~l~~~~w~~vIvDEaHr~kn 680 (1281)
+..||..++.+++. ++.+..+.|.......... .....+|+|+|++.|..... .+....+++|||||||++..
T Consensus 112 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~ 189 (417)
T 2i4i_A 112 ELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRD--LERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD 189 (417)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHH--HTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHH--hhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhc
Confidence 55899999998863 5667777776444332221 13468999999999876422 23344689999999999865
Q ss_pred cc--hHHHHHHHhhh-c---cCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHH
Q psy7773 681 HH--CKLTQTLNTFY-N---SSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETI 754 (1281)
Q Consensus 681 ~~--s~~~~~l~~~~-~---~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~ 754 (1281)
.. ..+...+.... . ..+.++|||||-. ++..++..+ +..+... ....
T Consensus 190 ~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~~~~--------------~~~~~~~-----~~~~---- 242 (417)
T 2i4i_A 190 MGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPK----EIQMLARDF--------------LDEYIFL-----AVGR---- 242 (417)
T ss_dssp TTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCH----HHHHHHHHH--------------CSSCEEE-----EEC-----
T ss_pred cCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCH----HHHHHHHHH--------------cCCCEEE-----EeCC----
Confidence 43 22233332111 1 3457899999732 111111100 0000000 0000
Q ss_pred HHHHHHHHhhhHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHH
Q psy7773 755 LIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQL 834 (1281)
Q Consensus 755 ~~~~~L~~~l~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 834 (1281)
.....+......+
T Consensus 243 ---------------------~~~~~~~i~~~~~---------------------------------------------- 255 (417)
T 2i4i_A 243 ---------------------VGSTSENITQKVV---------------------------------------------- 255 (417)
T ss_dssp ------------------------CCSSEEEEEE----------------------------------------------
T ss_pred ---------------------CCCCccCceEEEE----------------------------------------------
Confidence 0000000000000
Q ss_pred HHhcCCccchhhhHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCc
Q psy7773 835 RKLCNHPFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFS 914 (1281)
Q Consensus 835 rk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~ 914 (1281)
......|...|..++... ..+.++||||.....++.+..+|...|+.
T Consensus 256 --------------------------------~~~~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~ 302 (417)
T 2i4i_A 256 --------------------------------WVEESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYA 302 (417)
T ss_dssp --------------------------------ECCGGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred --------------------------------EeccHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCC
Confidence 011234666666666654 35678999999999999999999999999
Q ss_pred EEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEE
Q psy7773 915 YLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 994 (1281)
Q Consensus 915 ~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~ 994 (1281)
+..+||+++..+|..+++.|+++... +|+||+++++|||++.+++||+||+||++..|.|++||++|.|+.. .++
T Consensus 303 ~~~~h~~~~~~~r~~~~~~f~~g~~~---vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~ 377 (417)
T 2i4i_A 303 CTSIHGDRSQRDREEALHQFRSGKSP---ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG--LAT 377 (417)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTSSC---EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCE--EEE
T ss_pred eeEecCCCCHHHHHHHHHHHHcCCCC---EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCc--eEE
Confidence 99999999999999999999986655 6999999999999999999999999999999999999999999764 445
Q ss_pred EEEeCC
Q psy7773 995 RLITVN 1000 (1281)
Q Consensus 995 rli~~~ 1000 (1281)
.|++..
T Consensus 378 ~~~~~~ 383 (417)
T 2i4i_A 378 SFFNER 383 (417)
T ss_dssp EEECGG
T ss_pred EEEccc
Confidence 555543
No 32
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.95 E-value=1.5e-27 Score=286.34 Aligned_cols=328 Identities=18% Similarity=0.276 Sum_probs=220.5
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHC---C
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWA---P 619 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~---p 619 (1281)
..|+|||.+++..++.. .+.++|++.+||+|||++++..+...+......+.+|||||...+ .||...+.++. +
T Consensus 46 ~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 123 (412)
T 3fht_A 46 NRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 123 (412)
T ss_dssp CSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcc
Confidence 47999999999887742 347889999999999999876666554444455589999998755 88877777765 5
Q ss_pred CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc---cccccCceeEEEEeCCccccc--cchHHHHHHHhhh-
Q psy7773 620 SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK---SVLSKIQWKCMIIDEGHRMKN--HHCKLTQTLNTFY- 693 (1281)
Q Consensus 620 ~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~---~~l~~~~w~~vIvDEaHr~kn--~~s~~~~~l~~~~- 693 (1281)
...+....|..... .......+|+|+|++.+.... ..+....+++|||||||++.. ........+...+
T Consensus 124 ~~~~~~~~~~~~~~-----~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~ 198 (412)
T 3fht_A 124 ELKLAYAVRGNKLE-----RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP 198 (412)
T ss_dssp TCCEEEECTTCCCC-----TTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSC
T ss_pred cceEEEeecCcchh-----hhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCC
Confidence 66776666643211 112345789999999997643 334445799999999999854 2222233333332
Q ss_pred ccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhH
Q psy7773 694 NSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLK 773 (1281)
Q Consensus 694 ~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k 773 (1281)
...+.++|||||-. +++.++....+. +.. ......
T Consensus 199 ~~~~~i~~SAT~~~----~~~~~~~~~~~~--------------~~~-----~~~~~~---------------------- 233 (412)
T 3fht_A 199 RNCQMLLFSATFED----SVWKFAQKVVPD--------------PNV-----IKLKRE---------------------- 233 (412)
T ss_dssp TTCEEEEEESCCCH----HHHHHHHHHSSS--------------CEE-----ECCCGG----------------------
T ss_pred CCceEEEEEeecCH----HHHHHHHHhcCC--------------CeE-----Eeeccc----------------------
Confidence 34567899999842 122211111100 000 000000
Q ss_pred HHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHh
Q psy7773 774 KEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQ 853 (1281)
Q Consensus 774 ~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~ 853 (1281)
....+......+.+.
T Consensus 234 ---~~~~~~~~~~~~~~~-------------------------------------------------------------- 248 (412)
T 3fht_A 234 ---EETLDTIKQYYVLCS-------------------------------------------------------------- 248 (412)
T ss_dssp ---GSSCTTEEEEEEECS--------------------------------------------------------------
T ss_pred ---cccccCceEEEEEcC--------------------------------------------------------------
Confidence 000000000000000
Q ss_pred hhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHh
Q psy7773 854 HIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRK 933 (1281)
Q Consensus 854 ~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~ 933 (1281)
....|+..|..++... .+.++||||+....+..+...|...|+.+..++|+++..+|..+++.
T Consensus 249 ---------------~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~ 311 (412)
T 3fht_A 249 ---------------SRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIER 311 (412)
T ss_dssp ---------------SHHHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHH
T ss_pred ---------------ChHHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHH
Confidence 0123555555555442 45689999999999999999999999999999999999999999999
Q ss_pred hcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCCh------hhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHH
Q psy7773 934 FNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNP------HQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERIL 1007 (1281)
Q Consensus 934 Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp------~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~ 1007 (1281)
|+++... +|++|.++++|||++++++||+||+||++ ..|.|++||++|.|+... ++.|+.. .-+..++
T Consensus 312 f~~g~~~---vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~-~~~~~~~ 385 (412)
T 3fht_A 312 FREGKEK---VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGL--AVNMVDS-KHSMNIL 385 (412)
T ss_dssp HHTTSCS---EEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEE--EEEEECS-HHHHHHH
T ss_pred HHCCCCc---EEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCce--EEEEEcC-hhhHHHH
Confidence 9987655 69999999999999999999999999876 699999999999997654 4444443 2334444
Q ss_pred HHHH
Q psy7773 1008 AAAR 1011 (1281)
Q Consensus 1008 ~~~~ 1011 (1281)
....
T Consensus 386 ~~i~ 389 (412)
T 3fht_A 386 NRIQ 389 (412)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 33
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.95 E-value=4.4e-27 Score=282.62 Aligned_cols=319 Identities=15% Similarity=0.196 Sum_probs=222.4
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc-cHHHHHHHHHHHCC-C
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS-TLSNWVLEFEKWAP-S 620 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s-~l~~W~~E~~~~~p-~ 620 (1281)
+.+|+|||..++..++ ++.+.|+..+||+|||+.++..+..+. ...+.+|||||.. ++.||...+.+|++ +
T Consensus 19 ~~~~~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~l~~~~~~~---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 91 (414)
T 3oiy_A 19 GKDLTGYQRLWAKRIV----QGKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEK 91 (414)
T ss_dssp SSCCCHHHHHHHHHHT----TTCCEECCSCSSSSHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHHHCCSS
T ss_pred CCCCCHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHh---cCCCEEEEEECCHHHHHHHHHHHHHHccCC
Confidence 3478999999998876 356899999999999996666555543 3446899999985 45999999999986 7
Q ss_pred CcEEEEeCCHHHH--HHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccc-------------cchH-
Q psy7773 621 ANVVAYKGSPLAR--RALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKN-------------HHCK- 684 (1281)
Q Consensus 621 ~~~~~~~g~~~~r--~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn-------------~~s~- 684 (1281)
+.+..+.|..... .........+.++|+|+|++.+......+....+++|||||||++.. ....
T Consensus 92 ~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~ 171 (414)
T 3oiy_A 92 VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEI 171 (414)
T ss_dssp CCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHH
T ss_pred ceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHHhhcCCcHHH
Confidence 7888888875442 11222233456899999999998776666666899999999998742 2222
Q ss_pred HHHHHHhhh-----------ccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHH
Q psy7773 685 LTQTLNTFY-----------NSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEET 753 (1281)
Q Consensus 685 ~~~~l~~~~-----------~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~ 753 (1281)
+..++..+. .....+++||||....+...+. ...+..... .
T Consensus 172 ~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~----------------~~~~~~~~~--~---------- 223 (414)
T 3oiy_A 172 IRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLF----------------RDLLNFTVG--R---------- 223 (414)
T ss_dssp HHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHH----------------HHHHSCCSS--C----------
T ss_pred HHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHH----------------HHhhccCcC--c----------
Confidence 233333322 4457789999976554332110 000000000 0
Q ss_pred HHHHHHHHHhhhHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHH
Q psy7773 754 ILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQ 833 (1281)
Q Consensus 754 ~~~~~~L~~~l~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 833 (1281)
....+.....
T Consensus 224 -----------------------~~~~~~~i~~----------------------------------------------- 233 (414)
T 3oiy_A 224 -----------------------LVSVARNITH----------------------------------------------- 233 (414)
T ss_dssp -----------------------CCCCCCSEEE-----------------------------------------------
T ss_pred -----------------------cccccccchh-----------------------------------------------
Confidence 0000000000
Q ss_pred HHHhcCCccchhhhHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCC
Q psy7773 834 LRKLCNHPFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDF 913 (1281)
Q Consensus 834 Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~ 913 (1281)
.+....|...|..+|.. .+.++||||+....++.+...|...|+
T Consensus 234 ---------------------------------~~~~~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~ 277 (414)
T 3oiy_A 234 ---------------------------------VRISSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKF 277 (414)
T ss_dssp ---------------------------------EEESSCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTC
T ss_pred ---------------------------------eeeccCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 00111355556666655 357899999999999999999999999
Q ss_pred cEE-EEeCCCChHHHHHHHHhhcCCCCCeEEEEEe----ccccccccCccc-CCEEEEeCCC--CChhhhhhHhHhHHhh
Q psy7773 914 SYL-RLDGTTKSEDRGELLRKFNEPESKYFIFLLS----TRAGGLGLNLQA-ADTVIIFDSD--WNPHQDLQAQDRAHRI 985 (1281)
Q Consensus 914 ~~~-~l~G~~~~~~R~~~i~~Fn~~~~~~~v~Lls----T~agg~GlNL~~-ad~VI~~D~~--wnp~~~~Qa~gR~~Ri 985 (1281)
++. .+||. +|. ++.|+++... +|++ |+++++|||++. +++||+||+| +++..|.|++||++|.
T Consensus 278 ~~~~~~h~~----~r~--~~~f~~g~~~---vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~ 348 (414)
T 3oiy_A 278 NVGETWSEF----EKN--FEDFKVGKIN---ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRI 348 (414)
T ss_dssp CEEESSSCH----HHH--HHHHHTTSCS---EEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCE
T ss_pred ceehhhcCc----chH--HHHHhCCCCe---EEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccC
Confidence 998 88884 444 9999987655 4778 999999999999 9999999999 9999999999999999
Q ss_pred CCC--CceEEEEEEeCCCHHHHHHHHHHHHHH
Q psy7773 986 GQK--NEVRVLRLITVNSVEERILAAARYKLN 1015 (1281)
Q Consensus 986 GQ~--k~V~V~rli~~~tiEe~I~~~~~~K~~ 1015 (1281)
|+. +.-.++.|+ -|...+......+.
T Consensus 349 g~~~~~~g~~i~~~----~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 349 LNGVLVKGVSVIFE----EDEEIFESLKTRLL 376 (414)
T ss_dssp ETTEECCEEEEEEC----CCHHHHHHHHHHHH
T ss_pred CCCCCcceEEEEEE----ccHHHHHHHHHHhc
Confidence 986 566666666 23445544444443
No 34
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.95 E-value=2.3e-27 Score=291.53 Aligned_cols=305 Identities=17% Similarity=0.192 Sum_probs=218.4
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHCCCCc
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWAPSAN 622 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~p~~~ 622 (1281)
..|+|+|.+++..++. +.++|+..+||+|||++++..+.. . .+.+|||+|. +++.+|...+..+ +..
T Consensus 24 ~~~r~~Q~~~i~~il~----g~d~lv~apTGsGKTl~~~lp~l~---~---~g~~lvi~P~~aL~~q~~~~l~~~--gi~ 91 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPALL---L---NGLTVVVSPLISLMKDQVDQLQAN--GVA 91 (523)
T ss_dssp SSCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHH---S---SSEEEEECSCHHHHHHHHHHHHHT--TCC
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEECCCCcHHHHHHHHHHHH---h---CCCEEEECChHHHHHHHHHHHHHc--CCc
Confidence 4799999999998873 668999999999999876544321 1 3689999998 5558899999886 456
Q ss_pred EEEEeCCHHH--HHHHHhhhccCCccEEEechHHHhhc--ccccccCceeEEEEeCCccccccch---HHHHH---HHhh
Q psy7773 623 VVAYKGSPLA--RRALQGRMKNSKFNVLLTTYEFIIKD--KSVLSKIQWKCMIIDEGHRMKNHHC---KLTQT---LNTF 692 (1281)
Q Consensus 623 ~~~~~g~~~~--r~~~~~~~~~~~~~vvItTye~l~~~--~~~l~~~~w~~vIvDEaHr~kn~~s---~~~~~---l~~~ 692 (1281)
+..+.|.... ..........+..+|+++|++.+... ...+....+.+|||||||++..... ..+.. +...
T Consensus 92 ~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~ 171 (523)
T 1oyw_A 92 AACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQR 171 (523)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHh
Confidence 6666665332 22222334456789999999999643 2335556899999999999974321 11222 2223
Q ss_pred hccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHh
Q psy7773 693 YNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRL 772 (1281)
Q Consensus 693 ~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~ 772 (1281)
++...+++|||||-.....++...+.+-.|..+.. .+
T Consensus 172 ~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~----------~~--------------------------------- 208 (523)
T 1oyw_A 172 FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS----------SF--------------------------------- 208 (523)
T ss_dssp CTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC----------CC---------------------------------
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC----------CC---------------------------------
Confidence 35678899999996544444444333211111000 00
Q ss_pred HHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHH
Q psy7773 773 KKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYC 852 (1281)
Q Consensus 773 k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~ 852 (1281)
..|... +.
T Consensus 209 ------~r~~l~-~~----------------------------------------------------------------- 216 (523)
T 1oyw_A 209 ------DRPNIR-YM----------------------------------------------------------------- 216 (523)
T ss_dssp ------CCTTEE-EE-----------------------------------------------------------------
T ss_pred ------CCCceE-EE-----------------------------------------------------------------
Confidence 000000 00
Q ss_pred hhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHH
Q psy7773 853 QHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLR 932 (1281)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~ 932 (1281)
+.....++..|..+|... .+.++||||.....++.+...|...|+.+..+||+++..+|..+++
T Consensus 217 --------------v~~~~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~ 280 (523)
T 1oyw_A 217 --------------LMEKFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQE 280 (523)
T ss_dssp --------------EEECSSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred --------------EEeCCCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHH
Confidence 001123444455555443 5678999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEE
Q psy7773 933 KFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 994 (1281)
Q Consensus 933 ~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~ 994 (1281)
.|.+++.. +|++|.++|+|||++++++||+||+|+|+..|.|++||++|.|+...+.++
T Consensus 281 ~f~~g~~~---vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~ 339 (523)
T 1oyw_A 281 KFQRDDLQ---IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLF 339 (523)
T ss_dssp HHHTTSCS---EEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred HHHcCCCe---EEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEE
Confidence 99987655 599999999999999999999999999999999999999999987765543
No 35
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.94 E-value=1.9e-26 Score=286.05 Aligned_cols=310 Identities=18% Similarity=0.170 Sum_probs=214.6
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHCCCCc
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWAPSAN 622 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~p~~~ 622 (1281)
..|+|||.+++..++. +.++|+..+||+|||++++..+.. ..+.+|||+|. +++.||...+..+ ++.
T Consensus 43 ~~~rp~Q~~~i~~il~----g~d~lv~~pTGsGKTl~~~lpal~------~~g~~lVisP~~~L~~q~~~~l~~~--gi~ 110 (591)
T 2v1x_A 43 EKFRPLQLETINVTMA----GKEVFLVMPTGGGKSLCYQLPALC------SDGFTLVICPLISLMEDQLMVLKQL--GIS 110 (591)
T ss_dssp CSCCTTHHHHHHHHHT----TCCEEEECCTTSCTTHHHHHHHHT------SSSEEEEECSCHHHHHHHHHHHHHH--TCC
T ss_pred CCCCHHHHHHHHHHHc----CCCEEEEECCCChHHHHHHHHHHH------cCCcEEEEeCHHHHHHHHHHHHHhc--CCc
Confidence 4799999999998874 678999999999999876544422 24689999997 5668999999998 566
Q ss_pred EEEEeCCHHHH--HHHHhhh--ccCCccEEEechHHHhhcc---ccc----ccCceeEEEEeCCccccccc----hH--H
Q psy7773 623 VVAYKGSPLAR--RALQGRM--KNSKFNVLLTTYEFIIKDK---SVL----SKIQWKCMIIDEGHRMKNHH----CK--L 685 (1281)
Q Consensus 623 ~~~~~g~~~~r--~~~~~~~--~~~~~~vvItTye~l~~~~---~~l----~~~~w~~vIvDEaHr~kn~~----s~--~ 685 (1281)
+..+.|..... ....... .....+|+++|++.|.... ..+ ....+.+|||||||++.... .. .
T Consensus 111 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~ 190 (591)
T 2v1x_A 111 ATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKA 190 (591)
T ss_dssp EEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGG
T ss_pred EEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHHHH
Confidence 77776653322 2222222 3567899999999886431 222 23378999999999986432 11 1
Q ss_pred HHHHHhhhccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhh
Q psy7773 686 TQTLNTFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLR 765 (1281)
Q Consensus 686 ~~~l~~~~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 765 (1281)
...+...++...+++|||||-.....++...+..-.+..+.. .
T Consensus 191 l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~----------~--------------------------- 233 (591)
T 2v1x_A 191 LGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA----------S--------------------------- 233 (591)
T ss_dssp GGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC----------C---------------------------
T ss_pred HHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec----------C---------------------------
Confidence 123444446778899999995332222222221100000000 0
Q ss_pred HHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchh
Q psy7773 766 PFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQ 845 (1281)
Q Consensus 766 ~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~ 845 (1281)
...|.....+...+ .
T Consensus 234 ------------~~r~nl~~~v~~~~------------------------------~----------------------- 248 (591)
T 2v1x_A 234 ------------FNRPNLYYEVRQKP------------------------------S----------------------- 248 (591)
T ss_dssp ------------CCCTTEEEEEEECC------------------------------S-----------------------
T ss_pred ------------CCCcccEEEEEeCC------------------------------C-----------------------
Confidence 00011000000000 0
Q ss_pred hhHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChH
Q psy7773 846 NIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSE 925 (1281)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~ 925 (1281)
....++..|..++... ..+.++||||.....++.|...|...|+.+..+||+++..
T Consensus 249 -----------------------~~~~~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~ 304 (591)
T 2v1x_A 249 -----------------------NTEDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPE 304 (591)
T ss_dssp -----------------------SHHHHHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHH
T ss_pred -----------------------cHHHHHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHH
Confidence 0011233344444322 2567899999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEE
Q psy7773 926 DRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 994 (1281)
Q Consensus 926 ~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~ 994 (1281)
+|..+++.|..+... +|++|.++|+|||+++++.||+||+|+++..|.|++||++|.|+...+.++
T Consensus 305 ~R~~~~~~F~~g~~~---VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 305 DKTTVHRKWSANEIQ---VVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp HHHHHHHHHHTTSSS---EEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred HHHHHHHHHHcCCCe---EEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 999999999987655 699999999999999999999999999999999999999999987666555
No 36
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.94 E-value=5.6e-26 Score=301.12 Aligned_cols=310 Identities=15% Similarity=0.186 Sum_probs=220.1
Q ss_pred cCcccHHHHHHHHHHHHhhcCCC--CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCC
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNL--NGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAP 619 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~--~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p 619 (1281)
+.+|+|||..++.+++....++. ++|++.+||+|||++++..+..+.. ....+|||||+..| .||..+|.++++
T Consensus 601 ~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---~g~~vlvlvPt~~La~Q~~~~~~~~~~ 677 (1151)
T 2eyq_A 601 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---NHKQVAVLVPTTLLAQQHYDNFRDRFA 677 (1151)
T ss_dssp CSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---TTCEEEEECSSHHHHHHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---hCCeEEEEechHHHHHHHHHHHHHHhh
Confidence 34689999999999998766555 7899999999999998765544432 23589999998755 899999999886
Q ss_pred C--CcEEEEeCC--HHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhcc
Q psy7773 620 S--ANVVAYKGS--PLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNS 695 (1281)
Q Consensus 620 ~--~~~~~~~g~--~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~ 695 (1281)
. ..+..+.|. ...+.........+..+|+|+|++.+... +...+|++|||||+|++.. .....+..+...
T Consensus 678 ~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~---~~~~~l~lvIiDEaH~~g~---~~~~~l~~l~~~ 751 (1151)
T 2eyq_A 678 NWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD---VKFKDLGLLIVDEEHRFGV---RHKERIKAMRAN 751 (1151)
T ss_dssp TTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSC---CCCSSEEEEEEESGGGSCH---HHHHHHHHHHTT
T ss_pred cCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCC---ccccccceEEEechHhcCh---HHHHHHHHhcCC
Confidence 4 566667653 33333334445567799999999988653 3334789999999999754 334556555456
Q ss_pred CcEEEeecCCCCCChhHHHHHHhhh-cCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHH
Q psy7773 696 SHRVLLTGTPLQNKLPELWALLNFL-LPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKK 774 (1281)
Q Consensus 696 ~~rllLTgTPl~n~~~el~~ll~fl-~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~ 774 (1281)
.++++|||||..+.+..... .+ .+..
T Consensus 752 ~~vl~lSATp~p~~l~~~~~---~~~~~~~-------------------------------------------------- 778 (1151)
T 2eyq_A 752 VDILTLTATPIPRTLNMAMS---GMRDLSI-------------------------------------------------- 778 (1151)
T ss_dssp SEEEEEESSCCCHHHHHHHT---TTSEEEE--------------------------------------------------
T ss_pred CCEEEEcCCCChhhHHHHHh---cCCCceE--------------------------------------------------
Confidence 78899999997543221100 00 0000
Q ss_pred HHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhh
Q psy7773 775 EVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQH 854 (1281)
Q Consensus 775 ~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~ 854 (1281)
. ..|+.....+
T Consensus 779 --i-~~~~~~r~~i------------------------------------------------------------------ 789 (1151)
T 2eyq_A 779 --I-ATPPARRLAV------------------------------------------------------------------ 789 (1151)
T ss_dssp --C-CCCCCBCBCE------------------------------------------------------------------
T ss_pred --E-ecCCCCcccc------------------------------------------------------------------
Confidence 0 0000000000
Q ss_pred hcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHC--CCcEEEEeCCCChHHHHHHHH
Q psy7773 855 IGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR--DFSYLRLDGTTKSEDRGELLR 932 (1281)
Q Consensus 855 ~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~l~G~~~~~~R~~~i~ 932 (1281)
...+....+..+...++..+ ..+.+|+|||+.+..++.+...|... ++.+..+||.++..+|..+++
T Consensus 790 ----------~~~~~~~~~~~i~~~il~~l-~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~ 858 (1151)
T 2eyq_A 790 ----------KTFVREYDSMVVREAILREI-LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMN 858 (1151)
T ss_dssp ----------EEEEEECCHHHHHHHHHHHH-TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHH
T ss_pred ----------EEEEecCCHHHHHHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHH
Confidence 00000011122222333332 35788999999999999999999887 899999999999999999999
Q ss_pred hhcCCCCCeEEEEEeccccccccCcccCCEEEEeCC-CCChhhhhhHhHhHHhhCCCCceEEEEEEeC
Q psy7773 933 KFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDS-DWNPHQDLQAQDRAHRIGQKNEVRVLRLITV 999 (1281)
Q Consensus 933 ~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~-~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~ 999 (1281)
.|.++... +|+||.++++|||++.+++||++++ .|++.++.|++||++|.|+... +|.++..
T Consensus 859 ~F~~g~~~---VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~--~~ll~~~ 921 (1151)
T 2eyq_A 859 DFHHQRFN---VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAY--AWLLTPH 921 (1151)
T ss_dssp HHHTTSCC---EEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEE--EEEEECC
T ss_pred HHHcCCCc---EEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceE--EEEEECC
Confidence 99986655 5999999999999999999999999 6899999999999999997544 4555544
No 37
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.94 E-value=3.4e-27 Score=290.12 Aligned_cols=314 Identities=15% Similarity=0.171 Sum_probs=191.6
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc-cHHHHHHHHHHHCCCCcE
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS-TLSNWVLEFEKWAPSANV 623 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s-~l~~W~~E~~~~~p~~~~ 623 (1281)
.|+|||.+++..++.. .+.++|+..+||+|||++++..+...+......+.+|||||.. ++.||...|.++++...+
T Consensus 141 ~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~ 218 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 218 (508)
T ss_dssp ECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSC
T ss_pred CcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCe
Confidence 6999999999887642 2478899999999999998777666654444456899999986 559999999999865544
Q ss_pred EEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCcccccc--chHHHHHHHhhhc-cCcE
Q psy7773 624 VAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNH--HCKLTQTLNTFYN-SSHR 698 (1281)
Q Consensus 624 ~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~--~s~~~~~l~~~~~-~~~r 698 (1281)
.+..+....... ......+|+|+|++.+.... ..+....+++|||||||++... .......+...+. ..+.
T Consensus 219 ~~~~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~ 294 (508)
T 3fho_A 219 KTAFGIKDSVPK----GAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQI 294 (508)
T ss_dssp CEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEE
T ss_pred eEEEEeCCcccc----cccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeE
Confidence 333332221111 11236899999999987642 2233447899999999998652 1222333333333 4567
Q ss_pred EEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHHhh
Q psy7773 699 VLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVES 778 (1281)
Q Consensus 699 llLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~ 778 (1281)
++|||||-. ...++.. .+.+
T Consensus 295 i~lSAT~~~-~~~~~~~---~~~~-------------------------------------------------------- 314 (508)
T 3fho_A 295 VLFSATFSE-RVEKYAE---RFAP-------------------------------------------------------- 314 (508)
T ss_dssp EEEESCCST-HHHHHHH---HHST--------------------------------------------------------
T ss_pred EEEeCCCCH-HHHHHHH---HhcC--------------------------------------------------------
Confidence 999999832 1211111 1000
Q ss_pred cCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhcCC
Q psy7773 779 QLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQN 858 (1281)
Q Consensus 779 ~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~ 858 (1281)
.... +.+.-.. .. .....+.+.
T Consensus 315 ---~~~~--i~~~~~~---------------------------~~-----------~~~~~~~~~--------------- 336 (508)
T 3fho_A 315 ---NANE--IRLKTEE---------------------------LS-----------VEGIKQLYM--------------- 336 (508)
T ss_dssp ---TCEE--ECCCCCC------------------------------------------CCCCEEE---------------
T ss_pred ---CCeE--EEecccc---------------------------CC-----------cccceEEEE---------------
Confidence 0000 0000000 00 000000000
Q ss_pred CccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCC
Q psy7773 859 NTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPE 938 (1281)
Q Consensus 859 ~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~ 938 (1281)
.......|...+..++... .+.++||||.....+..+...|...|+.+..+||+++..+|..+++.|+++.
T Consensus 337 -------~~~~~~~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~ 407 (508)
T 3fho_A 337 -------DCQSEEHKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGT 407 (508)
T ss_dssp -------EC--CHHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSS
T ss_pred -------ECCchHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCC
Confidence 0001223555555555443 4568999999999999999999999999999999999999999999999866
Q ss_pred CCeEEEEEeccccccccCcccCCEEEEeCCC------CChhhhhhHhHhHHhhCCCCceEEE
Q psy7773 939 SKYFIFLLSTRAGGLGLNLQAADTVIIFDSD------WNPHQDLQAQDRAHRIGQKNEVRVL 994 (1281)
Q Consensus 939 ~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~------wnp~~~~Qa~gR~~RiGQ~k~V~V~ 994 (1281)
.. +|++|.++++|+|++.+++||+||+| +++..+.|++||++|.|+...+.++
T Consensus 408 ~~---VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l 466 (508)
T 3fho_A 408 SK---VLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINF 466 (508)
T ss_dssp CC---CCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEE
T ss_pred Ce---EEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEE
Confidence 55 59999999999999999999999999 7899999999999999976555444
No 38
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.94 E-value=1.1e-25 Score=281.86 Aligned_cols=329 Identities=16% Similarity=0.210 Sum_probs=213.9
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC----CCCCEEEEeCCc-cHHHHHHHHHHHC
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKK----NLGPYLVIVPLS-TLSNWVLEFEKWA 618 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~----~~~~~LIV~P~s-~l~~W~~E~~~~~ 618 (1281)
..|+|||.+++..++. ..+.+.|+..+||+|||++++..+...+.... ....+|||||.. ++.||..++.+++
T Consensus 42 ~~~~~~Q~~~i~~il~--~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~ 119 (579)
T 3sqw_A 42 PGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIH 119 (579)
T ss_dssp SSCCHHHHHHHHHHHC--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc--cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHH
Confidence 3699999999988772 23567899999999999997766665554432 234799999985 4589999998864
Q ss_pred ------CCCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccc---cccCceeEEEEeCCccccccc--hHHHH
Q psy7773 619 ------PSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSV---LSKIQWKCMIIDEGHRMKNHH--CKLTQ 687 (1281)
Q Consensus 619 ------p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~---l~~~~w~~vIvDEaHr~kn~~--s~~~~ 687 (1281)
+...+..+.|......... .......+|+|+|++.|...... ...-.+++|||||||++.... ..+..
T Consensus 120 ~~~~~~~~~~~~~~~gg~~~~~~~~-~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~ 198 (579)
T 3sqw_A 120 DMNYGLKKYACVSLVGGTDFRAAMN-KMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLET 198 (579)
T ss_dssp HHCGGGTTSCEEEECTTSCHHHHHH-HHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHH
T ss_pred hhcccccceEEEEEECCccHHHHHH-HHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHHHHH
Confidence 3455666666544333222 22234679999999999764322 122358899999999987543 22222
Q ss_pred HHHhhhc-------cCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHH
Q psy7773 688 TLNTFYN-------SSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRL 760 (1281)
Q Consensus 688 ~l~~~~~-------~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L 760 (1281)
++..+.. ....++||||+-.. +.+ ++..
T Consensus 199 i~~~l~~~~~~~~~~~~~l~~SAT~~~~-v~~---~~~~----------------------------------------- 233 (579)
T 3sqw_A 199 ISGILNEKNSKSADNIKTLLFSATLDDK-VQK---LANN----------------------------------------- 233 (579)
T ss_dssp HHHHHHHHCSSCTTCCEEEEEESSCCTH-HHH---HTTT-----------------------------------------
T ss_pred HHHHhhhhhcccccCceEEEEeccCChH-HHH---HHHH-----------------------------------------
Confidence 3222211 34689999997321 111 1100
Q ss_pred HHhhhHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCC
Q psy7773 761 HKVLRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNH 840 (1281)
Q Consensus 761 ~~~l~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~h 840 (1281)
.+.......+...- ... .... . ...+
T Consensus 234 ------------------~l~~~~~~~~~~~~--------------------~~~-~~~~-~--------------~i~~ 259 (579)
T 3sqw_A 234 ------------------IMNKKECLFLDTVD--------------------KNE-PEAH-E--------------RIDQ 259 (579)
T ss_dssp ------------------TCCSSEEEEEESSC--------------------SSS-CSSC-T--------------TEEE
T ss_pred ------------------HcCCCceEEEeecC--------------------ccc-cccc-c--------------ccce
Confidence 01111111110000 000 0000 0 0000
Q ss_pred ccchhhhHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhh--hcCCeEEEEechHHHHHHHHHHHHHC---CCcE
Q psy7773 841 PFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFK--ETKHRVLMFCQMTQLMTILEDYFIWR---DFSY 915 (1281)
Q Consensus 841 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~--~~~~kvLIFsq~~~~ld~L~~~L~~~---g~~~ 915 (1281)
.+... .. ....+...+..++..+. ..+.++||||.....++.+...|... |+.+
T Consensus 260 ~~~~~-------------------~~--~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v 318 (579)
T 3sqw_A 260 SVVIS-------------------EK--FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPI 318 (579)
T ss_dssp EEEEE-------------------SS--TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCE
T ss_pred EEEEe-------------------cc--hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcE
Confidence 00000 00 00112233333333333 45779999999999999999999887 9999
Q ss_pred EEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEE
Q psy7773 916 LRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLR 995 (1281)
Q Consensus 916 ~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~r 995 (1281)
..+||.++..+|..+++.|..+... +|++|.++++|||++.+++||+||+|+++..|.|++||++|.|+...+ +.
T Consensus 319 ~~~hg~~~~~~R~~~~~~F~~g~~~---vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~--i~ 393 (579)
T 3sqw_A 319 LEFHGKITQNKRTSLVKRFKKDESG---ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSS--VL 393 (579)
T ss_dssp EEESTTSCHHHHHHHHHHHHHCSSE---EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEE--EE
T ss_pred EEecCCCCHHHHHHHHHHhhcCCCe---EEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceE--EE
Confidence 9999999999999999999986544 599999999999999999999999999999999999999999976544 44
Q ss_pred EEeCC
Q psy7773 996 LITVN 1000 (1281)
Q Consensus 996 li~~~ 1000 (1281)
|++..
T Consensus 394 ~~~~~ 398 (579)
T 3sqw_A 394 FICKD 398 (579)
T ss_dssp EEEGG
T ss_pred EEccc
Confidence 45543
No 39
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.93 E-value=3.7e-25 Score=276.75 Aligned_cols=328 Identities=16% Similarity=0.220 Sum_probs=210.8
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCC----CCCEEEEeCCcc-HHHHHHHHHHHC
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKN----LGPYLVIVPLST-LSNWVLEFEKWA 618 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~----~~~~LIV~P~s~-l~~W~~E~~~~~ 618 (1281)
..|+|||.+++..++. ..+.+.|++.+||+|||++++..+...+..... ...+|||||... ..||..++.+++
T Consensus 93 ~~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~ 170 (563)
T 3i5x_A 93 PGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIH 170 (563)
T ss_dssp SSCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHH
Confidence 4699999999988772 235678999999999999977766655544331 247999999755 589999998863
Q ss_pred ------CCCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhccccc---ccCceeEEEEeCCccccccc--hHHHH
Q psy7773 619 ------PSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVL---SKIQWKCMIIDEGHRMKNHH--CKLTQ 687 (1281)
Q Consensus 619 ------p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l---~~~~w~~vIvDEaHr~kn~~--s~~~~ 687 (1281)
+...+..+.|......... .......+|+|+|++.|....... ..-.+++|||||||++.... ..+..
T Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~ 249 (563)
T 3i5x_A 171 DMNYGLKKYACVSLVGGTDFRAAMN-KMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLET 249 (563)
T ss_dssp HHCGGGTTSCEEEECTTSCHHHHHH-HHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHH
T ss_pred hhccccCceeEEEEECCcCHHHHHH-HHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHHHHH
Confidence 3455666666544333222 122346799999999987543221 22357899999999987543 22222
Q ss_pred HHHhhh-------ccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHH
Q psy7773 688 TLNTFY-------NSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRL 760 (1281)
Q Consensus 688 ~l~~~~-------~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L 760 (1281)
.+..+. ...+.++|||||-. .+ ..++..+
T Consensus 250 i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v---~~~~~~~---------------------------------------- 285 (563)
T 3i5x_A 250 ISGILNEKNSKSADNIKTLLFSATLDD-KV---QKLANNI---------------------------------------- 285 (563)
T ss_dssp HHHHHHHHCSSCTTCCEEEEEESSCCT-HH---HHHTTTT----------------------------------------
T ss_pred HHHhhhhccccCccCceEEEEEccCCH-HH---HHHHHHh----------------------------------------
Confidence 222211 13468999999742 11 1111111
Q ss_pred HHhhhHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCC
Q psy7773 761 HKVLRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNH 840 (1281)
Q Consensus 761 ~~~l~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~h 840 (1281)
+.......+..... .. ..... ...+
T Consensus 286 -------------------~~~~~~~~~~~~~~--------------------~~--~~~~~--------------~~~~ 310 (563)
T 3i5x_A 286 -------------------MNKKECLFLDTVDK--------------------NE--PEAHE--------------RIDQ 310 (563)
T ss_dssp -------------------CCSSEEEEEESSCS--------------------SS--CSSCT--------------TEEE
T ss_pred -------------------cCCCceEEEeccCC--------------------CC--ccccc--------------cCce
Confidence 00000000000000 00 00000 0000
Q ss_pred ccchhhhHHHHHhhhcCCCccccCCccccccch-HHHHHHHhhhhh--hcCCeEEEEechHHHHHHHHHHHHHC---CCc
Q psy7773 841 PFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGK-FELLDRILPKFK--ETKHRVLMFCQMTQLMTILEDYFIWR---DFS 914 (1281)
Q Consensus 841 p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K-~~~L~~lL~~~~--~~~~kvLIFsq~~~~ld~L~~~L~~~---g~~ 914 (1281)
.+.. ......+ ...+..++..+. ..+.++||||.....++.+...|... |+.
T Consensus 311 ~~~~----------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~ 368 (563)
T 3i5x_A 311 SVVI----------------------SEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLP 368 (563)
T ss_dssp EEEE----------------------ESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSC
T ss_pred EEEE----------------------CchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCce
Confidence 0000 0000011 112222222222 45779999999999999999999876 999
Q ss_pred EEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEE
Q psy7773 915 YLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 994 (1281)
Q Consensus 915 ~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~ 994 (1281)
+..+||+++..+|..+++.|.++... +|++|.++++|||++.+++||+||+|+++..|+|++||++|.|+... ++
T Consensus 369 v~~~h~~~~~~~R~~~~~~f~~g~~~---vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~--~i 443 (563)
T 3i5x_A 369 ILEFHGKITQNKRTSLVKRFKKDESG---ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGS--SV 443 (563)
T ss_dssp EEEESTTSCHHHHHHHHHHHHHCSSE---EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEE--EE
T ss_pred EEEecCCCCHHHHHHHHHHHhcCCCC---EEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCce--EE
Confidence 99999999999999999999986544 59999999999999999999999999999999999999999997644 44
Q ss_pred EEEeCC
Q psy7773 995 RLITVN 1000 (1281)
Q Consensus 995 rli~~~ 1000 (1281)
.|++..
T Consensus 444 ~~~~~~ 449 (563)
T 3i5x_A 444 LFICKD 449 (563)
T ss_dssp EEEEGG
T ss_pred EEEchh
Confidence 455543
No 40
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.93 E-value=1.6e-26 Score=283.13 Aligned_cols=313 Identities=18% Similarity=0.252 Sum_probs=109.8
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHH---HCC
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEK---WAP 619 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~---~~p 619 (1281)
..|+|+|..++..++. ..+.+.|++.+||+|||++++..+...+........+|||||...| .||...+.. +++
T Consensus 113 ~~p~~~Q~~ai~~il~--~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 190 (479)
T 3fmp_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (479)
T ss_dssp CSCCHHHHHHHHHHTS--BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCC
Confidence 4799999999988864 2346789999999999999766665544333444479999998665 777666554 456
Q ss_pred CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc---cccccCceeEEEEeCCcccccc---chHHHHHHHhhh
Q psy7773 620 SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK---SVLSKIQWKCMIIDEGHRMKNH---HCKLTQTLNTFY 693 (1281)
Q Consensus 620 ~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~---~~l~~~~w~~vIvDEaHr~kn~---~s~~~~~l~~~~ 693 (1281)
.+.+.+..|..... .......+|+|+|++.|.... ..+...++++|||||||++... .......+..+.
T Consensus 191 ~~~~~~~~~~~~~~-----~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~ 265 (479)
T 3fmp_B 191 ELKLAYAVRGNKLE-----RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP 265 (479)
T ss_dssp TCCEEEESTTCCCC-----TTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSC
T ss_pred CceEEEEeCCcccc-----ccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCC
Confidence 67777666643211 111345689999999997643 2344457899999999998642 222223333222
Q ss_pred ccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhH
Q psy7773 694 NSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLK 773 (1281)
Q Consensus 694 ~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k 773 (1281)
...+.+++||||-. +++.+...+
T Consensus 266 ~~~~~i~~SAT~~~----~~~~~~~~~----------------------------------------------------- 288 (479)
T 3fmp_B 266 RNCQMLLFSATFED----SVWKFAQKV----------------------------------------------------- 288 (479)
T ss_dssp TTSEEEEEESCCCH----HHHHHHHHH-----------------------------------------------------
T ss_pred ccceEEEEeCCCCH----HHHHHHHHH-----------------------------------------------------
Confidence 34567999999842 222222111
Q ss_pred HHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHh
Q psy7773 774 KEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQ 853 (1281)
Q Consensus 774 ~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~ 853 (1281)
+|......+... .... ..+.+.-..|+
T Consensus 289 ------~~~~~~i~~~~~----~~~~-----------------------------~~~~~~~~~~~-------------- 315 (479)
T 3fmp_B 289 ------VPDPNVIKLKRE----EETL-----------------------------DTIKQYYVLCS-------------- 315 (479)
T ss_dssp ------SSSEEEEEEC----------------------------------------------------------------
T ss_pred ------cCCCeEEecccc----ccCc-----------------------------CCceEEEEEeC--------------
Confidence 122111111000 0000 00000000000
Q ss_pred hhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHh
Q psy7773 854 HIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRK 933 (1281)
Q Consensus 854 ~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~ 933 (1281)
....|+..|..++... .+.++||||+....+..+...|...|+.+..+||+++..+|..+++.
T Consensus 316 ---------------~~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~ 378 (479)
T 3fmp_B 316 ---------------SRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIER 378 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------CHHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHH
Confidence 0112333444444332 34579999999999999999999999999999999999999999999
Q ss_pred hcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCCh------hhhhhHhHhHHhhCCCCceEE
Q psy7773 934 FNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNP------HQDLQAQDRAHRIGQKNEVRV 993 (1281)
Q Consensus 934 Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp------~~~~Qa~gR~~RiGQ~k~V~V 993 (1281)
|.++... +|++|.++++|||++.+++||+||+||++ ..|.|++||++|.|+...+.+
T Consensus 379 f~~g~~~---iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~ 441 (479)
T 3fmp_B 379 FREGKEK---VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVN 441 (479)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHcCCCc---EEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEE
Confidence 9986654 59999999999999999999999999876 699999999999997655443
No 41
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.92 E-value=1.5e-25 Score=283.36 Aligned_cols=307 Identities=17% Similarity=0.215 Sum_probs=209.2
Q ss_pred cccHHHHHHHHHHHHhhcCC--CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCC--
Q psy7773 545 KLKEYQIKGLEWMVSLYNNN--LNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAP-- 619 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~--~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p-- 619 (1281)
+|+|+|.+++..+......+ .+.|+..+||+|||++++..+...+.. ...+||+||...| .||...|.+|++
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~qvlvlaPtr~La~Q~~~~l~~~~~~~ 444 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GFQTAFMVPTSILAIQHYRRTVESFSKF 444 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TSCEEEECSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHhhhc
Confidence 79999999999998765444 478999999999999988777766543 2589999998655 899999999986
Q ss_pred CCcEEEEeCCHHH--HHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCc
Q psy7773 620 SANVVAYKGSPLA--RRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSH 697 (1281)
Q Consensus 620 ~~~~~~~~g~~~~--r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~ 697 (1281)
++.+..++|.... +.........+..+|+|+|++.+... +...++++|||||+|++.... ...+.......+
T Consensus 445 gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~---~~~~~l~lVVIDEaHr~g~~q---r~~l~~~~~~~~ 518 (780)
T 1gm5_A 445 NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQED---VHFKNLGLVIIDEQHRFGVKQ---REALMNKGKMVD 518 (780)
T ss_dssp SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHC---CCCSCCCEEEEESCCCC--------CCCCSSSSCCC
T ss_pred CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhh---hhccCCceEEecccchhhHHH---HHHHHHhCCCCC
Confidence 5778888886433 23333444566799999999988543 233478999999999984322 112222224578
Q ss_pred EEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHHh
Q psy7773 698 RVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVE 777 (1281)
Q Consensus 698 rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~ 777 (1281)
.++|||||....+. +..+-..+. .+.
T Consensus 519 vL~mSATp~p~tl~----~~~~g~~~~--------------------------------------------------s~i 544 (780)
T 1gm5_A 519 TLVMSATPIPRSMA----LAFYGDLDV--------------------------------------------------TVI 544 (780)
T ss_dssp EEEEESSCCCHHHH----HHHTCCSSC--------------------------------------------------EEE
T ss_pred EEEEeCCCCHHHHH----HHHhCCcce--------------------------------------------------eee
Confidence 89999999753221 110000000 000
Q ss_pred hcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhcC
Q psy7773 778 SQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQ 857 (1281)
Q Consensus 778 ~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~ 857 (1281)
..+|+....+.
T Consensus 545 ~~~p~~r~~i~--------------------------------------------------------------------- 555 (780)
T 1gm5_A 545 DEMPPGRKEVQ--------------------------------------------------------------------- 555 (780)
T ss_dssp CCCCSSCCCCE---------------------------------------------------------------------
T ss_pred eccCCCCcceE---------------------------------------------------------------------
Confidence 01111100000
Q ss_pred CCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechH--------HHHHHHHHHHHH---CCCcEEEEeCCCChHH
Q psy7773 858 NNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMT--------QLMTILEDYFIW---RDFSYLRLDGTTKSED 926 (1281)
Q Consensus 858 ~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~--------~~ld~L~~~L~~---~g~~~~~l~G~~~~~~ 926 (1281)
..+....+...+...+......+++++|||... ..+..+...|.. .++.+..+||+++..+
T Consensus 556 --------~~~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~e 627 (780)
T 1gm5_A 556 --------TMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEE 627 (780)
T ss_dssp --------ECCCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSC
T ss_pred --------EEEeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHH
Confidence 000001122223333444445677888888754 346667777877 4788999999999999
Q ss_pred HHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCC-ChhhhhhHhHhHHhhCCCCceEEE
Q psy7773 927 RGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDW-NPHQDLQAQDRAHRIGQKNEVRVL 994 (1281)
Q Consensus 927 R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~w-np~~~~Qa~gR~~RiGQ~k~V~V~ 994 (1281)
|..+++.|.++... +|+||.++++|||++.+++||++|+++ +...+.|++||++|.|+...|.++
T Consensus 628 R~~v~~~F~~G~~~---ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill 693 (780)
T 1gm5_A 628 KDRVMLEFAEGRYD---ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLV 693 (780)
T ss_dssp SHHHHHHHTTTSSS---BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECC
T ss_pred HHHHHHHHHCCCCe---EEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEE
Confidence 99999999987665 599999999999999999999999985 789999999999999987654443
No 42
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=6.6e-24 Score=277.16 Aligned_cols=364 Identities=15% Similarity=0.104 Sum_probs=221.7
Q ss_pred ccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHCCC
Q psy7773 542 VNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWAPS 620 (1281)
Q Consensus 542 ~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~p~ 620 (1281)
++.+|+|||.+++..+.. +.++|++.+||+|||+++...+...+. ..+++||++|. .+..||..+|..+++
T Consensus 83 ~~f~L~~~Q~eai~~l~~----g~~vLV~apTGSGKTlva~lai~~~l~---~g~rvL~l~PtkaLa~Q~~~~l~~~~~- 154 (1010)
T 2xgj_A 83 YPFTLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLK---NKQRVIYTSPIKALSNQKYRELLAEFG- 154 (1010)
T ss_dssp CSSCCCHHHHHHHHHHHH----TCEEEEECCTTSCHHHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHHHS-
T ss_pred CCCCCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHhc---cCCeEEEECChHHHHHHHHHHHHHHhC-
Confidence 345799999999998764 667999999999999998766655543 23689999998 556999999999886
Q ss_pred CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCccccccc-hHHH-HHHHhhhccC
Q psy7773 621 ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNHH-CKLT-QTLNTFYNSS 696 (1281)
Q Consensus 621 ~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~~-s~~~-~~l~~~~~~~ 696 (1281)
.+.++.|... .....+|+|+|++.|.... .......+++|||||||++.+.. ...+ ..+..+....
T Consensus 155 -~vglltGd~~---------~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~ 224 (1010)
T 2xgj_A 155 -DVGLMTGDIT---------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKV 224 (1010)
T ss_dssp -CEEEECSSCE---------ECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTC
T ss_pred -CEEEEeCCCc---------cCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCC
Confidence 5666777532 1245789999999886532 11222378999999999997653 2223 3343332456
Q ss_pred cEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHH
Q psy7773 697 HRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEV 776 (1281)
Q Consensus 697 ~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v 776 (1281)
+.++||||+- +..++...+..+.. .+.... .
T Consensus 225 ~il~LSATi~--n~~e~a~~l~~~~~--------------~~~~vi---------------------------------~ 255 (1010)
T 2xgj_A 225 RYVFLSATIP--NAMEFAEWICKIHS--------------QPCHIV---------------------------------Y 255 (1010)
T ss_dssp EEEEEECCCT--THHHHHHHHHHHHT--------------SCEEEE---------------------------------E
T ss_pred eEEEEcCCCC--CHHHHHHHHHhhcC--------------CCeEEE---------------------------------e
Confidence 7899999953 23333222221100 000000 0
Q ss_pred hhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHH-hcCCccchhhhHHHHHhhh
Q psy7773 777 ESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRK-LCNHPFMFQNIEEKYCQHI 855 (1281)
Q Consensus 777 ~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk-~~~hp~l~~~~~~~~~~~~ 855 (1281)
...-|......+...-. .......+. .+......+...+..+.. ....|. ... ..
T Consensus 256 ~~~rp~pl~~~~~~~~~-----------~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~------~~~--~~ 311 (1010)
T 2xgj_A 256 TNFRPTPLQHYLFPAHG-----------DGIYLVVDE-----KSTFREENFQKAMASISNQIGDDPN------STD--SR 311 (1010)
T ss_dssp ECCCSSCEEEEEEETTS-----------SCCEEEECT-----TCCBCHHHHHHHHHTCC---------------------
T ss_pred cCCCcccceEEEEecCC-----------cceeeeecc-----ccccchHHHHHHHHHHhhhhccccc------ccc--cc
Confidence 00111111211111000 000000000 000011111111110000 000000 000 00
Q ss_pred cCCCccccCCccccccchHHHHHHHhhhhhh-cCCeEEEEechHHHHHHHHHHHHHCCCc--------------------
Q psy7773 856 GQNNTVVSGPDIYRTSGKFELLDRILPKFKE-TKHRVLMFCQMTQLMTILEDYFIWRDFS-------------------- 914 (1281)
Q Consensus 856 ~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~-~~~kvLIFsq~~~~ld~L~~~L~~~g~~-------------------- 914 (1281)
+.......+.. ... .....+..++..+.. .+.++||||.....++.+...|...++.
T Consensus 312 g~~~~~~k~~~-~~~-~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~ 389 (1010)
T 2xgj_A 312 GKKGQTYKGGS-AKG-DAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLP 389 (1010)
T ss_dssp -------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSC
T ss_pred ccccccccccc-ccc-cchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcc
Confidence 00000000000 000 002233444444444 3458999999999999999988765543
Q ss_pred -------------------EEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEE----eCC---
Q psy7773 915 -------------------YLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVII----FDS--- 968 (1281)
Q Consensus 915 -------------------~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~----~D~--- 968 (1281)
+..+||+++..+|..++..|.++... +|+||.++++|||++.+++||. ||.
T Consensus 390 ~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ik---VLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~ 466 (1010)
T 2xgj_A 390 ETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFTSVRKWDGQQF 466 (1010)
T ss_dssp GGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCS---EEEEEGGGGGSTTCCBSEEEESCSEEECSSCE
T ss_pred hhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCc---EEEEehHhhccCCCCCceEEEeCCcccCCcCC
Confidence 77899999999999999999986655 5999999999999999999999 999
Q ss_pred -CCChhhhhhHhHhHHhhCCCCceEEEEEEeCCC
Q psy7773 969 -DWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNS 1001 (1281)
Q Consensus 969 -~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~t 1001 (1281)
||+|..|.|++|||+|.|+.....+|.|++.+.
T Consensus 467 rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~ 500 (1010)
T 2xgj_A 467 RWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 500 (1010)
T ss_dssp EECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCC
T ss_pred ccCCHHHHhHhhhhcccCCCCCceEEEEEECCCC
Confidence 999999999999999999988899999998663
No 43
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.91 E-value=4.1e-24 Score=279.95 Aligned_cols=284 Identities=17% Similarity=0.175 Sum_probs=209.7
Q ss_pred CcccCCHHHHHHHHHHhCCCCCCCHHHHHHHhccccc---------ccCc-----c----ccc---------------cH
Q psy7773 1 TPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFA---------TTGE-----K----VEL---------------NE 47 (1281)
Q Consensus 1 TPiqN~~~eL~sll~fL~p~~l~~~~~F~~~~~~~~~---------~~~~-----~----~~~---------------~~ 47 (1281)
||++|++.|+|++++||.|++|++...|...+..... .... . ... ..
T Consensus 315 TPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~ 394 (968)
T 3dmq_A 315 TPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSE 394 (968)
T ss_dssp SCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSS
T ss_pred CCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhcccchhh
Confidence 9999999999999999999999999999876532110 0000 0 000 00
Q ss_pred HHHHHHHHHHHHHh-----hhhHHhhchhhhhhcCCCceEEEEEeCCCHHHHHHHHHHHHhhhhhccccccCCCCCCchH
Q psy7773 48 EETILIIRRLHKVL-----RPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGAR 122 (1281)
Q Consensus 48 ~~~~~~~~~L~~~l-----~~~~lRR~k~dv~~~LP~k~~~~v~v~ls~~Q~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~ 122 (1281)
.........+..++ ..+++|+++..+. .+|.+....+.+++++.++.+|........ .... ..
T Consensus 395 ~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~-~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~---~~ 462 (968)
T 3dmq_A 395 DAQSARQELVSMLMDRHGTSRVLFRNTRNGVK-GFPKRELHTIKLPLPTQYQTAIKVSGIMGA--------RKSA---ED 462 (968)
T ss_dssp CSTTTHHHHHHHHGGGCTTTTTEECCCTTTCC-CCCCCCCCEEEECCCHHHHHHHHHHHHTTC--------CSSG---GG
T ss_pred hhHHHHHHHHHHHHHhhCcchhhhhhhhhhhc-ccChhheEeeecCCCHHHHHHHHHHhhhhh--------hhhh---HH
Confidence 00000011222223 3456677777775 799999999999999999999975432100 0000 00
Q ss_pred HHHHHHHHHHHHcCCCcCchhhHHHHhhhhcCCCccccCCcccccCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHH
Q psy7773 123 ALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILE 202 (1281)
Q Consensus 123 ~~~~~l~~Lr~~~~hP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~ 202 (1281)
....+.+|..... . ...........++|+.+|..++.. ..+.|+||||++..+++.|.
T Consensus 463 --------~~~~~l~pe~~~~-------~-----l~~~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~ 520 (968)
T 3dmq_A 463 --------RARDMLYPERIYQ-------E-----FEGDNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLE 520 (968)
T ss_dssp --------GTHHHHCSGGGTT-------T-----TTSSSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHH
T ss_pred --------HHhhhcChHHHHH-------H-----hhhhhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHH
Confidence 0011222321111 0 001122345678999999999987 56889999999999999999
Q ss_pred HHHHh-CCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhh
Q psy7773 203 DYFIW-RDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHR 281 (1281)
Q Consensus 203 ~~l~~-~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R 281 (1281)
..|.. .|+++..+||+++..+|..+++.|+++++.+.| |++|.++++|||++.|++||+||+||||..+.|++||+||
T Consensus 521 ~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~v-LvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R 599 (968)
T 3dmq_A 521 QVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQV-LLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDR 599 (968)
T ss_dssp HHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEE-EECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSC
T ss_pred HHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccE-EEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhcccc
Confidence 99994 599999999999999999999999987644555 6788999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEEEeccchHHHHHHHHhhccccchhhhh
Q psy7773 282 IGQKNEVRVLRLITVNSVEERILAAARYKLNMDEKEYH 319 (1281)
Q Consensus 282 ~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~~l~~~~~~ 319 (1281)
+||++.|.||++++.+|+|++|+..+..|..++.....
T Consensus 600 ~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~~ 637 (968)
T 3dmq_A 600 IGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCP 637 (968)
T ss_dssp SSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCCS
T ss_pred CCCCceEEEEEecCCChHHHHHHHHHHhCCCceecCCC
Confidence 99999999999999999999999999999887665443
No 44
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.5e-24 Score=281.16 Aligned_cols=364 Identities=16% Similarity=0.117 Sum_probs=218.4
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCCCC
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAPSA 621 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p~~ 621 (1281)
..+|+|||..++..+. ++.+.|++.+||+|||+++...+...+. ..+.+||++|...| .||...|..+++
T Consensus 182 ~f~ltp~Q~~AI~~i~----~g~dvLV~ApTGSGKTlva~l~i~~~l~---~g~rvlvl~PtraLa~Q~~~~l~~~~~-- 252 (1108)
T 3l9o_A 182 PFTLDPFQDTAISCID----RGESVLVSAHTSAGKTVVAEYAIAQSLK---NKQRVIYTSPIKALSNQKYRELLAEFG-- 252 (1108)
T ss_dssp SSCCCHHHHHHHHHHT----TTCCEEEECCSSSHHHHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHHTS--
T ss_pred CCCCCHHHHHHHHHHH----cCCCEEEECCCCCChHHHHHHHHHHHHh---cCCeEEEEcCcHHHHHHHHHHHHHHhC--
Confidence 4589999999998764 5778999999999999998777766653 23689999998654 899999999987
Q ss_pred cEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccc--cccCceeEEEEeCCccccccc--hHHHHHHHhhhccCc
Q psy7773 622 NVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSV--LSKIQWKCMIIDEGHRMKNHH--CKLTQTLNTFYNSSH 697 (1281)
Q Consensus 622 ~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~--l~~~~w~~vIvDEaHr~kn~~--s~~~~~l~~~~~~~~ 697 (1281)
.+.++.|... .....+|+|+|++.|...... ..-.++.+|||||||++.... ......+..+....+
T Consensus 253 ~VglltGd~~---------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~q 323 (1108)
T 3l9o_A 253 DVGLMTGDIT---------INPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVR 323 (1108)
T ss_dssp SEEEECSSCB---------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSE
T ss_pred CccEEeCccc---------cCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhcCCCce
Confidence 5666666532 235689999999988664221 112268999999999997543 223334443334567
Q ss_pred EEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHHh
Q psy7773 698 RVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVE 777 (1281)
Q Consensus 698 rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~ 777 (1281)
.++||||+ .|. .++...+..+... |..... .
T Consensus 324 vl~lSATi-pn~-~e~a~~l~~~~~~--------------~~~vi~---------------------------------~ 354 (1108)
T 3l9o_A 324 YVFLSATI-PNA-MEFAEWICKIHSQ--------------PCHIVY---------------------------------T 354 (1108)
T ss_dssp EEEEECSC-SSC-HHHHHHHHHHTCS--------------CEEEEE---------------------------------E
T ss_pred EEEEcCCC-CCH-HHHHHHHHhhcCC--------------CeEEEe---------------------------------c
Confidence 89999993 333 3333333222111 000000 0
Q ss_pred hcCCCceEEEE-EcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhc-CCccchhhhHHHHHhhh
Q psy7773 778 SQLPEKVEYII-KCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLC-NHPFMFQNIEEKYCQHI 855 (1281)
Q Consensus 778 ~~lP~k~~~~v-~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~-~hp~l~~~~~~~~~~~~ 855 (1281)
..-|......+ .+... ......+. .+......+...+..+.... ..+..... ..
T Consensus 355 ~~rp~pl~~~~~~~~~~------------~~~~~vd~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~ 410 (1108)
T 3l9o_A 355 NFRPTPLQHYLFPAHGD------------GIYLVVDE-----KSTFREENFQKAMASISNQIGDDPNSTDS-------RG 410 (1108)
T ss_dssp CCCSSCEEEEEEETTSS------------CCEEEEET-----TTEECHHHHHHHHTTC----------------------
T ss_pred CCCcccceEEEeecCCc------------ceeeeecc-----ccchhhhhHHHHHHHHHhhhccccccccc-------cc
Confidence 00111111111 11000 00000000 00001111111111000000 00000000 00
Q ss_pred cCCCccccCCccccccchHHHHHHHhhhhhh-cCCeEEEEechHHHHHHHHHHHHHCCCc--------------------
Q psy7773 856 GQNNTVVSGPDIYRTSGKFELLDRILPKFKE-TKHRVLMFCQMTQLMTILEDYFIWRDFS-------------------- 914 (1281)
Q Consensus 856 ~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~-~~~kvLIFsq~~~~ld~L~~~L~~~g~~-------------------- 914 (1281)
........+. ........+..++..+.. .+.++||||.....++.+...|...|+.
T Consensus 411 ~~~~~~~~~~---~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~ 487 (1108)
T 3l9o_A 411 KKGQTYKGGS---AKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLP 487 (1108)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHH
T ss_pred cccccccccc---ccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcc
Confidence 0000000000 000013334444444443 3568999999999999999888654333
Q ss_pred -------------------EEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCCCCChh--
Q psy7773 915 -------------------YLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPH-- 973 (1281)
Q Consensus 915 -------------------~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~~wnp~-- 973 (1281)
+..+||+++..+|..++..|.++... +|+||.++++|||++++++||.++.+|++.
T Consensus 488 ~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ik---VLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~ 564 (1108)
T 3l9o_A 488 ETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFTSVRKWDGQQF 564 (1108)
T ss_dssp HHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCC---EEEEESCCCSCCCC--CEEEESCSEEESSSCE
T ss_pred hhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCe---EEEECcHHhcCCCCCCceEEEecCcccCcccc
Confidence 68899999999999999999986655 599999999999999999999888877655
Q ss_pred ------hhhhHhHhHHhhCCCCceEEEEEEeCCCHH
Q psy7773 974 ------QDLQAQDRAHRIGQKNEVRVLRLITVNSVE 1003 (1281)
Q Consensus 974 ------~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiE 1003 (1281)
.|.|++|||+|.|+....++|.++......
T Consensus 565 r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~ 600 (1108)
T 3l9o_A 565 RWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEP 600 (1108)
T ss_dssp EECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCH
T ss_pred ccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCH
Confidence 599999999999999999999999877433
No 45
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.90 E-value=4.2e-22 Score=260.22 Aligned_cols=399 Identities=17% Similarity=0.119 Sum_probs=226.3
Q ss_pred ccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc-cHHHHHHHHHHHCCC
Q psy7773 542 VNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS-TLSNWVLEFEKWAPS 620 (1281)
Q Consensus 542 ~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s-~l~~W~~E~~~~~p~ 620 (1281)
++.+|+|||.+++..+. ++.++|++.+||+|||++++..+..+.. ..+.+|||+|.. +..||..+|..++++
T Consensus 36 ~~f~l~~~Q~~aI~~il----~g~~vlv~apTGsGKTlv~~~~i~~~~~---~g~~vlvl~PtraLa~Q~~~~l~~~~~~ 108 (997)
T 4a4z_A 36 WPFELDTFQKEAVYHLE----QGDSVFVAAHTSAGKTVVAEYAIAMAHR---NMTKTIYTSPIKALSNQKFRDFKETFDD 108 (997)
T ss_dssp CSSCCCHHHHHHHHHHH----TTCEEEEECCTTSCSHHHHHHHHHHHHH---TTCEEEEEESCGGGHHHHHHHHHTTC--
T ss_pred CCCCCCHHHHHHHHHHH----cCCCEEEEECCCCcHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHHcCC
Confidence 45579999999998776 4678999999999999987666655542 235799999975 559999999999988
Q ss_pred CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhccc--ccccCceeEEEEeCCcccccc--chHHHHHHHhhhccC
Q psy7773 621 ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKS--VLSKIQWKCMIIDEGHRMKNH--HCKLTQTLNTFYNSS 696 (1281)
Q Consensus 621 ~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~--~l~~~~w~~vIvDEaHr~kn~--~s~~~~~l~~~~~~~ 696 (1281)
..+..+.|... .....+|+|+|++.|..... .....++.+|||||||++.+. .......+..+....
T Consensus 109 ~~v~~l~G~~~---------~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v 179 (997)
T 4a4z_A 109 VNIGLITGDVQ---------INPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHV 179 (997)
T ss_dssp CCEEEECSSCE---------ECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTC
T ss_pred CeEEEEeCCCc---------cCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCC
Confidence 89988888632 23568999999999865422 122236899999999998753 233344454443456
Q ss_pred cEEEeecCCCCCChhHHHHHHhhhcCC-CCCChhHHHHHhcccccCC-----------cccccCCHHHHHHHHHHHHHhh
Q psy7773 697 HRVLLTGTPLQNKLPELWALLNFLLPS-IFKSCSTFEQWFNAPFATT-----------GEKVELNEEETILIIRRLHKVL 764 (1281)
Q Consensus 697 ~rllLTgTPl~n~~~el~~ll~fl~p~-~~~~~~~f~~~f~~~~~~~-----------~~~~~~~~~~~~~~~~~L~~~l 764 (1281)
+.++|||||- +..++...+...... .+.-...+. ..|.... .......... .......+
T Consensus 180 ~iIlLSAT~~--n~~ef~~~l~~~~~~~~~vi~~~~r---~~pl~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~l 250 (997)
T 4a4z_A 180 KFILLSATVP--NTYEFANWIGRTKQKNIYVISTPKR---PVPLEINIWAKKELIPVINQNSEFLEAN----FRKHKEIL 250 (997)
T ss_dssp EEEEEECCCT--THHHHHHHHHHHHTCCEEEEECSSC---SSCEEEEEEETTEEEEEECTTCCBCHHH----HHHHHHHH
T ss_pred CEEEEcCCCC--ChHHHHHHHhcccCCceEEEecCCC---CccceEEEecCCcchhcccchhhhhHHH----HHHHHHHh
Confidence 7799999974 233444433321100 000000000 0000000 0000000000 00000000
Q ss_pred hHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCC-CCCchHHHHHHHHHHHHhcCCccc
Q psy7773 765 RPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKT-GEGGARALKNTIVQLRKLCNHPFM 843 (1281)
Q Consensus 765 ~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~Lrk~~~hp~l 843 (1281)
.... .. ..+.. +.. ++.-.. .... .......+.. +.++..... .-+..+..+
T Consensus 251 ~~~~----~~----~~~~~--------~~~-~~~~~~---~~~~-~~~~~~rg~~~~~~~~~~g~----~~~~~~~~~-- 303 (997)
T 4a4z_A 251 NGES----AK----GAPSK--------TDN-GRGGST---ARGG-RGGSNTRDGRGGRGNSTRGG----ANRGGSRGA-- 303 (997)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred hccc----cc----ccccc--------ccc-cccccc---cccc-cccccccccccccccccccc----ccccccccc--
Confidence 0000 00 00000 000 000000 0000 0000000000 000000000 000000000
Q ss_pred hhhhHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCC----------
Q psy7773 844 FQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDF---------- 913 (1281)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~---------- 913 (1281)
........ ...........++..|..+|... ...++||||......+.+..+|...|+
T Consensus 304 ---------~~~~~~~~-~~~~~~~~~~~~~~~li~~l~~~--~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~ 371 (997)
T 4a4z_A 304 ---------GAIGSNKR-KFFTQDGPSKKTWPEIVNYLRKR--ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIH 371 (997)
T ss_dssp -----------------------CCCCTTHHHHHHHHHHHT--TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHH
T ss_pred ---------cccccccc-ccccccccchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 00000000 00000011234555666666542 446899999999999999999977665
Q ss_pred -----------------------------cEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEE
Q psy7773 914 -----------------------------SYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVI 964 (1281)
Q Consensus 914 -----------------------------~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI 964 (1281)
.+..+||+++..+|..++..|..+..+ +|++|.++++|||++. .+||
T Consensus 372 ~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~k---VLvAT~~~a~GIDiP~-~~VV 447 (997)
T 4a4z_A 372 MFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIK---VLFATETFAMGLNLPT-RTVI 447 (997)
T ss_dssp HHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCS---EEEECTHHHHSCCCCC-SEEE
T ss_pred HHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCc---EEEEchHhhCCCCCCC-ceEE
Confidence 478999999999999999999987665 5999999999999999 7777
Q ss_pred EeCCCC---------ChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHH
Q psy7773 965 IFDSDW---------NPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILA 1008 (1281)
Q Consensus 965 ~~D~~w---------np~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~ 1008 (1281)
+++.++ ++..|.|+.|||+|.|+.....+|.+...+..+...+.
T Consensus 448 i~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~ 500 (997)
T 4a4z_A 448 FSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFK 500 (997)
T ss_dssp ESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHH
T ss_pred EeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHH
Confidence 766665 99999999999999999999999999876666655554
No 46
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.89 E-value=3.6e-22 Score=256.46 Aligned_cols=326 Identities=16% Similarity=0.137 Sum_probs=211.7
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc-cHHHHHHHHHHHCC-CCc
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS-TLSNWVLEFEKWAP-SAN 622 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s-~l~~W~~E~~~~~p-~~~ 622 (1281)
.|+|+|.+++..+ +..+.+.|++.+||+|||+++...+...+... .+.+|+++|.. +..+|...+.++.+ +..
T Consensus 30 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r~La~q~~~~~~~~~~~g~~ 104 (715)
T 2va8_A 30 KLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLRALTNEKYLTFKDWELIGFK 104 (715)
T ss_dssp BCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCHHHHHHHHHHHGGGGGGTCC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcHHHHHHHHHHHHHhhcCCCE
Confidence 7999999998753 23578899999999999999876665544322 36899999987 56899999966553 677
Q ss_pred EEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccc--cccCceeEEEEeCCccccccc--hHHHHHHHhhhccCcE
Q psy7773 623 VVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSV--LSKIQWKCMIIDEGHRMKNHH--CKLTQTLNTFYNSSHR 698 (1281)
Q Consensus 623 ~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~--l~~~~w~~vIvDEaHr~kn~~--s~~~~~l~~~~~~~~r 698 (1281)
+..+.|...... ......+|+|||++.+...... ..-.++++|||||+|.+.+.. ..+...+..+ +..+.
T Consensus 105 v~~~~G~~~~~~-----~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~-~~~~i 178 (715)
T 2va8_A 105 VAMTSGDYDTDD-----AWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRA-KRRNL 178 (715)
T ss_dssp EEECCSCSSSCC-----GGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHH-HTSEE
T ss_pred EEEEeCCCCCch-----hhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHHHHhc-ccCcE
Confidence 888877532211 0123689999999988653211 112267999999999987422 2233333333 57788
Q ss_pred EEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHHhh
Q psy7773 699 VLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVES 778 (1281)
Q Consensus 699 llLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~ 778 (1281)
++|||||-+ ..++. .|+..+.....
T Consensus 179 i~lSATl~n--~~~~~------------------~~l~~~~~~~~----------------------------------- 203 (715)
T 2va8_A 179 LALSATISN--YKQIA------------------KWLGAEPVATN----------------------------------- 203 (715)
T ss_dssp EEEESCCTT--HHHHH------------------HHHTCEEEECC-----------------------------------
T ss_pred EEEcCCCCC--HHHHH------------------HHhCCCccCCC-----------------------------------
Confidence 999999842 33333 23322110000
Q ss_pred cCCCceEEEEEc-CCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhcC
Q psy7773 779 QLPEKVEYIIKC-DMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQ 857 (1281)
Q Consensus 779 ~lP~k~~~~v~~-~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~ 857 (1281)
.-|-.....+.. .... ... ...+..
T Consensus 204 ~r~~~l~~~~~~~~~~~-----------~~~--------------------------------~~~~~~----------- 229 (715)
T 2va8_A 204 WRPVPLIEGVIYPERKK-----------KEY--------------------------------NVIFKD----------- 229 (715)
T ss_dssp CCSSCEEEEEEEECSST-----------TEE--------------------------------EEEETT-----------
T ss_pred CCCCCceEEEEecCCcc-----------cce--------------------------------eeecCc-----------
Confidence 011111111100 0000 000 000000
Q ss_pred CCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCC-------------------------
Q psy7773 858 NNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRD------------------------- 912 (1281)
Q Consensus 858 ~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g------------------------- 912 (1281)
. ....+.....++..+..++ ..++++|||+......+.+...|....
T Consensus 230 ~----~~~~~~~~~~~~~~~~~~~----~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 301 (715)
T 2va8_A 230 N----TTKKVHGDDAIIAYTLDSL----SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGS 301 (715)
T ss_dssp S----CEEEEESSSHHHHHHHHHH----TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCH
T ss_pred c----hhhhcccchHHHHHHHHHH----hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccc
Confidence 0 0000000122333333333 457889999999999988888887542
Q ss_pred -----------CcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEE----eC-------CCC
Q psy7773 913 -----------FSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVII----FD-------SDW 970 (1281)
Q Consensus 913 -----------~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~----~D-------~~w 970 (1281)
..+..+||+++..+|..+.+.|.++... +|+||.+++.|||++++++||. || .|+
T Consensus 302 ~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~ 378 (715)
T 2va8_A 302 DEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIK---VIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEI 378 (715)
T ss_dssp HHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSC---EEEECGGGGGSSCCCBSEEEECCC--------------
T ss_pred cccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCe---EEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcC
Confidence 3488899999999999999999986554 5999999999999999999998 99 899
Q ss_pred ChhhhhhHhHhHHhhCCCCceEEEEEEeCCC
Q psy7773 971 NPHQDLQAQDRAHRIGQKNEVRVLRLITVNS 1001 (1281)
Q Consensus 971 np~~~~Qa~gR~~RiGQ~k~V~V~rli~~~t 1001 (1281)
++..+.|+.|||+|.|+...-.+|+|++...
T Consensus 379 s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 379 PIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred CHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 9999999999999999988889999987654
No 47
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.89 E-value=1.6e-22 Score=258.95 Aligned_cols=321 Identities=19% Similarity=0.171 Sum_probs=214.3
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc-cHHHHHHHHHHHCC-CCc
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS-TLSNWVLEFEKWAP-SAN 622 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s-~l~~W~~E~~~~~p-~~~ 622 (1281)
.|+|||.+++..+. .+.++|++.+||+|||+++...+...+.. .+.+|+|+|.. +..+|..++.+|.+ +..
T Consensus 25 ~l~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~P~r~La~q~~~~~~~~~~~g~~ 97 (702)
T 2p6r_A 25 ELFPPQAEAVEKVF----SGKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (702)
T ss_dssp CCCCCCHHHHHHHT----TCSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCHHHHHHHHHHh----CCCcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEeCcHHHHHHHHHHHHHHHhcCCE
Confidence 79999999998844 47789999999999999987666554432 46899999987 56999999976654 577
Q ss_pred EEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccc--cccCceeEEEEeCCcccccc--chHHHHHHHhh---hcc
Q psy7773 623 VVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSV--LSKIQWKCMIIDEGHRMKNH--HCKLTQTLNTF---YNS 695 (1281)
Q Consensus 623 ~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~--l~~~~w~~vIvDEaHr~kn~--~s~~~~~l~~~---~~~ 695 (1281)
+..+.|..... .......+|+|||++.+...... ..-.++++|||||+|.+... ...+...+..+ .+.
T Consensus 98 v~~~~G~~~~~-----~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~ 172 (702)
T 2p6r_A 98 IGISTGDYESR-----DEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKA 172 (702)
T ss_dssp EEEECSSCBCC-----SSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTT
T ss_pred EEEEeCCCCcc-----hhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcC
Confidence 88888753221 11134789999999988553211 11126789999999998752 22222222222 245
Q ss_pred CcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHH
Q psy7773 696 SHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKE 775 (1281)
Q Consensus 696 ~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~ 775 (1281)
.+.++||||+- +..++. +|+..+.-..
T Consensus 173 ~~ii~lSATl~--n~~~~~------------------~~l~~~~~~~--------------------------------- 199 (702)
T 2p6r_A 173 LRVIGLSATAP--NVTEIA------------------EWLDADYYVS--------------------------------- 199 (702)
T ss_dssp CEEEEEECCCT--THHHHH------------------HHTTCEEEEC---------------------------------
T ss_pred ceEEEECCCcC--CHHHHH------------------HHhCCCcccC---------------------------------
Confidence 67899999973 233332 2222111000
Q ss_pred HhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhh
Q psy7773 776 VESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHI 855 (1281)
Q Consensus 776 v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~ 855 (1281)
..-|-.....+.... .........
T Consensus 200 --~~r~~~l~~~~~~~~--------------~~~~~~~~~---------------------------------------- 223 (702)
T 2p6r_A 200 --DWRPVPLVEGVLCEG--------------TLELFDGAF---------------------------------------- 223 (702)
T ss_dssp --CCCSSCEEEEEECSS--------------EEEEEETTE----------------------------------------
T ss_pred --CCCCccceEEEeeCC--------------eeeccCcch----------------------------------------
Confidence 001111111111000 000000000
Q ss_pred cCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHC------------------------
Q psy7773 856 GQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR------------------------ 911 (1281)
Q Consensus 856 ~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~------------------------ 911 (1281)
.....-.+...+... ...+.++|||+.....+..+...|...
T Consensus 224 ----------~~~~~~~~~~~~~~~----~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~ 289 (702)
T 2p6r_A 224 ----------STSRRVKFEELVEEC----VAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSR 289 (702)
T ss_dssp ----------EEEEECCHHHHHHHH----HHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHH
T ss_pred ----------hhhhhhhHHHHHHHH----HhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccH
Confidence 000000023333333 345788999999999888888777542
Q ss_pred ------CCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEE----eC---CCCChhhhhhH
Q psy7773 912 ------DFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVII----FD---SDWNPHQDLQA 978 (1281)
Q Consensus 912 ------g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~----~D---~~wnp~~~~Qa 978 (1281)
++.+..+||+++..+|..+.+.|.++... +|+||.+++.|||++++++||. || .|+++..+.|+
T Consensus 290 ~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr 366 (702)
T 2p6r_A 290 KLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIK---VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQM 366 (702)
T ss_dssp HHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCC---EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHH
T ss_pred HHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCe---EEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHH
Confidence 23466799999999999999999986554 5999999999999999999998 77 78999999999
Q ss_pred hHhHHhhCCCCceEEEEEEeCCCHH
Q psy7773 979 QDRAHRIGQKNEVRVLRLITVNSVE 1003 (1281)
Q Consensus 979 ~gR~~RiGQ~k~V~V~rli~~~tiE 1003 (1281)
+|||+|.|+.....+|.+++....+
T Consensus 367 ~GRaGR~g~~~~G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 367 AGRAGRPGMDERGEAIIIVGKRDRE 391 (702)
T ss_dssp HTTBSCTTTCSCEEEEEECCGGGHH
T ss_pred hhhcCCCCCCCCceEEEEecCccHH
Confidence 9999999999899999999887644
No 48
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.89 E-value=2.9e-22 Score=257.12 Aligned_cols=322 Identities=19% Similarity=0.140 Sum_probs=215.2
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHCC-CCc
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWAP-SAN 622 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~p-~~~ 622 (1281)
.|+|||.+++..+ +..+.+.|++.+||+|||+++...+...+... .+.+|||+|. .+..+|..++.+|.+ +..
T Consensus 23 ~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~raLa~q~~~~~~~l~~~g~~ 97 (720)
T 2zj8_A 23 SFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKALAEEKFQEFQDWEKIGLR 97 (720)
T ss_dssp BCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGGGHHHHHHHTGGGGGGTCC
T ss_pred CCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHHHHHHHHHHHHHHHhcCCE
Confidence 7999999998752 22477899999999999999855444333222 3689999997 556899999976654 678
Q ss_pred EEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccc--cccCceeEEEEeCCccccc--cchHHHHHHHhhhccCcE
Q psy7773 623 VVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSV--LSKIQWKCMIIDEGHRMKN--HHCKLTQTLNTFYNSSHR 698 (1281)
Q Consensus 623 ~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~--l~~~~w~~vIvDEaHr~kn--~~s~~~~~l~~~~~~~~r 698 (1281)
+..+.|...... ......+|+|||++.+...... ..-.++++|||||+|++.. ....+...+..+....+.
T Consensus 98 v~~~~G~~~~~~-----~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~i 172 (720)
T 2zj8_A 98 VAMATGDYDSKD-----EWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQI 172 (720)
T ss_dssp EEEECSCSSCCC-----GGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBEE
T ss_pred EEEecCCCCccc-----cccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCeE
Confidence 888888532211 1124689999999988543211 1122689999999999975 222333333333235678
Q ss_pred EEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHHhh
Q psy7773 699 VLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVES 778 (1281)
Q Consensus 699 llLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~ 778 (1281)
++||||+-+ ..++ ..|+..+.... .
T Consensus 173 i~lSATl~n--~~~~------------------~~~l~~~~~~~-----------------------------------~ 197 (720)
T 2zj8_A 173 IGLSATIGN--PEEL------------------AEWLNAELIVS-----------------------------------D 197 (720)
T ss_dssp EEEECCCSC--HHHH------------------HHHTTEEEEEC-----------------------------------C
T ss_pred EEEcCCcCC--HHHH------------------HHHhCCcccCC-----------------------------------C
Confidence 999999732 3333 23332110000 0
Q ss_pred cCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhcCC
Q psy7773 779 QLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQN 858 (1281)
Q Consensus 779 ~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~ 858 (1281)
.-|-.....+.... ........
T Consensus 198 ~rp~~l~~~~~~~~--------------~~~~~~~~-------------------------------------------- 219 (720)
T 2zj8_A 198 WRPVKLRRGVFYQG--------------FVTWEDGS-------------------------------------------- 219 (720)
T ss_dssp CCSSEEEEEEEETT--------------EEEETTSC--------------------------------------------
T ss_pred CCCCcceEEEEeCC--------------eeeccccc--------------------------------------------
Confidence 01111111111000 00000000
Q ss_pred CccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHC---------------------------
Q psy7773 859 NTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR--------------------------- 911 (1281)
Q Consensus 859 ~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~--------------------------- 911 (1281)
......+...+..++ ..++++||||.....+..+...|...
T Consensus 220 --------~~~~~~~~~~~~~~~----~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 287 (720)
T 2zj8_A 220 --------IDRFSSWEELVYDAI----RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNE 287 (720)
T ss_dssp --------EEECSSTTHHHHHHH----HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHH
T ss_pred --------hhhhhHHHHHHHHHH----hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchH
Confidence 000112333333333 45788999999999888888777643
Q ss_pred ------CCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEE----eC----CCCChhhhhh
Q psy7773 912 ------DFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVII----FD----SDWNPHQDLQ 977 (1281)
Q Consensus 912 ------g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~----~D----~~wnp~~~~Q 977 (1281)
...+..+||+++..+|..+.+.|.++... +|+||.+++.|||++++++||. || .|+++..+.|
T Consensus 288 ~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~---vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Q 364 (720)
T 2zj8_A 288 KLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIK---AVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQ 364 (720)
T ss_dssp HHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSC---EEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHH
T ss_pred HHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCe---EEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHH
Confidence 12488899999999999999999986554 5999999999999999999998 88 6899999999
Q ss_pred HhHhHHhhCCCCceEEEEEEeCCCHHH
Q psy7773 978 AQDRAHRIGQKNEVRVLRLITVNSVEE 1004 (1281)
Q Consensus 978 a~gR~~RiGQ~k~V~V~rli~~~tiEe 1004 (1281)
++|||+|.|+...-.+|.|++....+.
T Consensus 365 r~GRaGR~g~~~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 365 MLGRAGRPKYDEVGEGIIVSTSDDPRE 391 (720)
T ss_dssp HHTTBCCTTTCSEEEEEEECSSSCHHH
T ss_pred HHhhcCCCCCCCCceEEEEecCccHHH
Confidence 999999999988899999999887554
No 49
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.89 E-value=3.5e-22 Score=259.03 Aligned_cols=156 Identities=18% Similarity=0.234 Sum_probs=110.2
Q ss_pred cccHHHHHHHHHHHHhhc----------CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHH
Q psy7773 545 KLKEYQIKGLEWMVSLYN----------NNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLE 613 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~----------~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E 613 (1281)
.|||||..|+.+++.... .+.+||+++.||+|||++++.++ .++...+...++|||||. .+..||..+
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH-HHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 699999999999987542 23679999999999999997666 444333444689999995 566999999
Q ss_pred HHHHCCCCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccc---c-ccCceeEEEEeCCccccccchHHHHHH
Q psy7773 614 FEKWAPSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSV---L-SKIQWKCMIIDEGHRMKNHHCKLTQTL 689 (1281)
Q Consensus 614 ~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~---l-~~~~w~~vIvDEaHr~kn~~s~~~~~l 689 (1281)
|..|.+.. +..+... ..+.........+|+|||++.|...... + ....+.+||||||||+... ..++.+
T Consensus 350 f~~f~~~~---v~~~~s~--~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~--~~~~~I 422 (1038)
T 2w00_A 350 YQRFSPDS---VNGSENT--AGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG--EAQKNL 422 (1038)
T ss_dssp HHTTSTTC---SSSSCCC--HHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH--HHHHHH
T ss_pred HHHhcccc---cccccCH--HHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch--HHHHHH
Confidence 99998652 1222111 1112222235689999999999764211 1 1126899999999998642 235556
Q ss_pred HhhhccCcEEEeecCCCCC
Q psy7773 690 NTFYNSSHRVLLTGTPLQN 708 (1281)
Q Consensus 690 ~~~~~~~~rllLTgTPl~n 708 (1281)
...++..++++|||||...
T Consensus 423 ~~~~p~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 423 KKKFKRYYQFGFTGTPIFP 441 (1038)
T ss_dssp HHHCSSEEEEEEESSCCCS
T ss_pred HHhCCcccEEEEeCCcccc
Confidence 5556778899999999864
No 50
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.89 E-value=6.1e-22 Score=260.81 Aligned_cols=321 Identities=16% Similarity=0.201 Sum_probs=222.6
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHC-CC
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWA-PS 620 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~-p~ 620 (1281)
+.+|+|+|..++..++. +.+.|+..+||+|||+.++..+..++ .....+|||+|...| .|+...|..+. .+
T Consensus 76 gf~pt~iQ~~ai~~il~----g~dvlv~ApTGSGKTl~~l~~il~~~---~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~ 148 (1104)
T 4ddu_A 76 GKDLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEK 148 (1104)
T ss_dssp SSCCCHHHHHHHHHHTT----TCCEEECCSTTCCHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHTTSCTT
T ss_pred CCCCCHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHHHHH---hcCCeEEEEechHHHHHHHHHHHHHhhCCC
Confidence 44799999999987763 67899999999999997766665554 344689999998655 89999999976 35
Q ss_pred CcEEEEeCCHHH--HHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCcccccc-------------chH-
Q psy7773 621 ANVVAYKGSPLA--RRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNH-------------HCK- 684 (1281)
Q Consensus 621 ~~~~~~~g~~~~--r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~-------------~s~- 684 (1281)
+.+..++|.... +.........+.++|+|+|++.|......+...++++|||||||++... ...
T Consensus 149 i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~ 228 (1104)
T 4ddu_A 149 VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEI 228 (1104)
T ss_dssp SCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHH
T ss_pred CeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCCCHHH
Confidence 688888876533 2222233444568999999999987766566668999999999986532 112
Q ss_pred HHHHHHhhh-----------ccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHH
Q psy7773 685 LTQTLNTFY-----------NSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEET 753 (1281)
Q Consensus 685 ~~~~l~~~~-----------~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~ 753 (1281)
+..++..+. ...+.+++||||....+...+. -+++...+ ...
T Consensus 229 i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~-~~~l~i~v-----------------~~~--------- 281 (1104)
T 4ddu_A 229 IRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLF-RDLLNFTV-----------------GRL--------- 281 (1104)
T ss_dssp HHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHH-HHHTCCCC-----------------CBC---------
T ss_pred HHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHh-hcceeEEe-----------------ccC---------
Confidence 233343322 3457799999986654332110 00000000 000
Q ss_pred HHHHHHHHHhhhHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHH
Q psy7773 754 ILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQ 833 (1281)
Q Consensus 754 ~~~~~~L~~~l~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 833 (1281)
...+....
T Consensus 282 ------------------------~~~~~~i~------------------------------------------------ 289 (1104)
T 4ddu_A 282 ------------------------VSVARNIT------------------------------------------------ 289 (1104)
T ss_dssp ------------------------CCCCCCEE------------------------------------------------
T ss_pred ------------------------CCCcCCce------------------------------------------------
Confidence 00000000
Q ss_pred HHHhcCCccchhhhHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCC
Q psy7773 834 LRKLCNHPFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDF 913 (1281)
Q Consensus 834 Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~ 913 (1281)
..+....|...|..+|.. .+.++||||+....++.|..+|...|+
T Consensus 290 --------------------------------~~~~~~~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~ 334 (1104)
T 4ddu_A 290 --------------------------------HVRISSRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKF 334 (1104)
T ss_dssp --------------------------------EEEESCCCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHTTC
T ss_pred --------------------------------eEEEecCHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhCCC
Confidence 000111355556666655 347899999999999999999999999
Q ss_pred cEE-EEeCCCChHHHHHHHHhhcCCCCCeEEEEEe----ccccccccCccc-CCEEEEeCCCC-----------------
Q psy7773 914 SYL-RLDGTTKSEDRGELLRKFNEPESKYFIFLLS----TRAGGLGLNLQA-ADTVIIFDSDW----------------- 970 (1281)
Q Consensus 914 ~~~-~l~G~~~~~~R~~~i~~Fn~~~~~~~v~Lls----T~agg~GlNL~~-ad~VI~~D~~w----------------- 970 (1281)
++. .+|| +|.+ ++.|.++..+ +|++ |+++++|||++. +++||+||+|-
T Consensus 335 ~~~~~lhg-----~rr~-l~~F~~G~~~---VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~ 405 (1104)
T 4ddu_A 335 NVGETWSE-----FEKN-FEDFKVGKIN---ILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLAR 405 (1104)
T ss_dssp CEEESSSS-----HHHH-HHHHHHTSCS---EEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHH
T ss_pred CeeeEecC-----cHHH-HHHHHCCCCC---EEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHH
Confidence 998 8998 3556 9999987665 5888 999999999999 99999999998
Q ss_pred -------------------------------------------------------ChhhhhhHhHhHHhhCCCCce--EE
Q psy7773 971 -------------------------------------------------------NPHQDLQAQDRAHRIGQKNEV--RV 993 (1281)
Q Consensus 971 -------------------------------------------------------np~~~~Qa~gR~~RiGQ~k~V--~V 993 (1281)
++..|+||.||++|.|...-. ..
T Consensus 406 l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Gls 485 (1104)
T 4ddu_A 406 VLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVS 485 (1104)
T ss_dssp HHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceE
Confidence 778899999999998764432 22
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHH
Q psy7773 994 LRLITVNSVEERILAAARYKLNMD 1017 (1281)
Q Consensus 994 ~rli~~~tiEe~I~~~~~~K~~l~ 1017 (1281)
+.++ -|++++.....++...
T Consensus 486 i~~~----~d~~~~~~l~~~~~~~ 505 (1104)
T 4ddu_A 486 VIFE----EDEEIFESLKTRLLLI 505 (1104)
T ss_dssp EEEC----CCHHHHHHHHHHHHHH
T ss_pred EEEE----ecHHHHHHHHHHHhhh
Confidence 3333 2667777777777654
No 51
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.85 E-value=7.1e-21 Score=251.09 Aligned_cols=317 Identities=16% Similarity=0.175 Sum_probs=206.7
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCCC--
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAPS-- 620 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p~-- 620 (1281)
..| |+|..++..++ .+.+.|++.+||+|||+.++.++..+.. ....+|||+|...| .|+...+.++++.
T Consensus 56 ~~p-~iQ~~ai~~il----~g~dvlv~apTGSGKTl~~lp~l~~~~~---~~~~~lil~PtreLa~Q~~~~l~~l~~~~~ 127 (1054)
T 1gku_B 56 EPR-AIQKMWAKRIL----RKESFAATAPTGVGKTSFGLAMSLFLAL---KGKRCYVIFPTSLLVIQAAETIRKYAEKAG 127 (1054)
T ss_dssp SCC-HHHHHHHHHHH----TTCCEECCCCBTSCSHHHHHHHHHHHHT---TSCCEEEEESCHHHHHHHHHHHHHHHTTTC
T ss_pred CCH-HHHHHHHHHHH----hCCCEEEEcCCCCCHHHHHHHHHHHHhh---cCCeEEEEeccHHHHHHHHHHHHHHHhhcC
Confidence 348 99999998877 4678999999999999855555554432 34689999998665 8899999988764
Q ss_pred C----cEEEEeCCHHHHHH--HHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhh--
Q psy7773 621 A----NVVAYKGSPLARRA--LQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTF-- 692 (1281)
Q Consensus 621 ~----~~~~~~g~~~~r~~--~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~-- 692 (1281)
+ .+..++|....... ....... .+|+|+|++.|......|. .+++|||||||++.+....+...+..+
T Consensus 128 i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~--~l~~lViDEah~~l~~~~~~~~i~~~lgf 203 (1054)
T 1gku_B 128 VGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELG--HFDFIFVDDVDAILKASKNVDKLLHLLGF 203 (1054)
T ss_dssp CSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSC--CCSEEEESCHHHHHTSTHHHHHHHHHTTE
T ss_pred CCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhc--cCCEEEEeChhhhhhccccHHHHHHHhCc
Confidence 3 67777775433221 1222222 8999999999988665544 688999999999887554444444332
Q ss_pred ---------hccCcEEEeecCCCCCChhHHHHHHhhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHh
Q psy7773 693 ---------YNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKV 763 (1281)
Q Consensus 693 ---------~~~~~rllLTgTPl~n~~~el~~ll~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 763 (1281)
......+++|||+-.. .++.. .|...+.. +.....
T Consensus 204 ~~~~~~~~~~~~~q~~l~SAT~t~~--~~~~~--------------~~~~~~~~-i~v~~~------------------- 247 (1054)
T 1gku_B 204 HYDLKTKSWVGEARGCLMVSTATAK--KGKKA--------------ELFRQLLN-FDIGSS------------------- 247 (1054)
T ss_dssp EEETTTTEEEECCSSEEEECCCCSC--CCTTH--------------HHHHHHHC-CCCSCC-------------------
T ss_pred chhhhhhhcccCCceEEEEecCCCc--hhHHH--------------HHhhcceE-EEccCc-------------------
Confidence 1234568899986543 11100 00000000 000000
Q ss_pred hhHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHHHHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccc
Q psy7773 764 LRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFM 843 (1281)
Q Consensus 764 l~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l 843 (1281)
...+....+.
T Consensus 248 --------------~~~~~~i~~~-------------------------------------------------------- 257 (1054)
T 1gku_B 248 --------------RITVRNVEDV-------------------------------------------------------- 257 (1054)
T ss_dssp --------------EECCCCEEEE--------------------------------------------------------
T ss_pred --------------ccCcCCceEE--------------------------------------------------------
Confidence 0000000000
Q ss_pred hhhhHHHHHhhhcCCCccccCCccccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCC
Q psy7773 844 FQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTK 923 (1281)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~ 923 (1281)
+....|...|..++..+ +.++||||.....++.|..+|... +++..+||.+.
T Consensus 258 ------------------------~~~~~k~~~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~ 309 (1054)
T 1gku_B 258 ------------------------AVNDESISTLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK 309 (1054)
T ss_dssp ------------------------EESCCCTTTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS
T ss_pred ------------------------EechhHHHHHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH
Confidence 00123444455555543 567999999999999999999988 99999999873
Q ss_pred hHHHHHHHHhhcCCCCCeEEEEEe----ccccccccCcccC-CEEEEeCCC-----------------------------
Q psy7773 924 SEDRGELLRKFNEPESKYFIFLLS----TRAGGLGLNLQAA-DTVIIFDSD----------------------------- 969 (1281)
Q Consensus 924 ~~~R~~~i~~Fn~~~~~~~v~Lls----T~agg~GlNL~~a-d~VI~~D~~----------------------------- 969 (1281)
.+++.|.++... +|+| |+++++|||++.+ ++||+||+|
T Consensus 310 -----~~l~~F~~G~~~---VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (1054)
T 1gku_B 310 -----GDYEKFVEGEID---HLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDE 381 (1054)
T ss_dssp -----HHHHHHHHTSCS---EEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHH
T ss_pred -----HHHHHHHcCCCc---EEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHH
Confidence 788999986655 4777 9999999999995 999999999
Q ss_pred ------------------------------------------CChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHH
Q psy7773 970 ------------------------------------------WNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERIL 1007 (1281)
Q Consensus 970 ------------------------------------------wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~ 1007 (1281)
.++..|+|++||++|.|.......+.++..+ |..++
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~--d~~~~ 459 (1054)
T 1gku_B 382 IERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLED--DSELL 459 (1054)
T ss_dssp HHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECS--CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEec--CHHHH
Confidence 7899999999999998877532333334433 45566
Q ss_pred HHHHHHHHH
Q psy7773 1008 AAARYKLNM 1016 (1281)
Q Consensus 1008 ~~~~~K~~l 1016 (1281)
.....++..
T Consensus 460 ~~l~~~l~~ 468 (1054)
T 1gku_B 460 SAFIERAKL 468 (1054)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 665555554
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.80 E-value=2.7e-19 Score=214.69 Aligned_cols=95 Identities=17% Similarity=0.141 Sum_probs=84.9
Q ss_pred CCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCE-----
Q psy7773 888 KHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADT----- 962 (1281)
Q Consensus 888 ~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~----- 962 (1281)
+.++||||.....++.+...|...|+++..+||. +|..+++.|.++... +|+||.++++|||++ +++
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~---vLVaT~v~e~GiDip-~~~VI~~g 242 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWD---FVITTDISEMGANFK-ADRVIDPR 242 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCS---EEEECGGGGTSCCCC-CSEEEECC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCe---EEEECchHHcCcccC-CcEEEecC
Confidence 5579999999999999999999999999999996 688899999987665 699999999999999 555
Q ss_pred ------------EEEeCCCCChhhhhhHhHhHHhhCCCCc
Q psy7773 963 ------------VIIFDSDWNPHQDLQAQDRAHRIGQKNE 990 (1281)
Q Consensus 963 ------------VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~ 990 (1281)
||+++.|.++.+|.|++||++|.|....
T Consensus 243 ~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~ 282 (431)
T 2v6i_A 243 KTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLG 282 (431)
T ss_dssp EEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCC
T ss_pred ccccceecccceeecccccCCHHHHHHhhhccCCCCCCCC
Confidence 5788999999999999999999996543
No 53
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.79 E-value=1.2e-18 Score=213.03 Aligned_cols=143 Identities=17% Similarity=0.267 Sum_probs=125.7
Q ss_pred ccCcHHHHHHHHHHHhh--hCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecC--------CCCHHHHHHHHHHhcCCC
Q psy7773 166 RTSGKFELLDRILPKFK--ETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDG--------TTKSEDRGELLRKFNEPE 235 (1281)
Q Consensus 166 ~~s~K~~~L~~ll~~~~--~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g--------~~~~~~R~~~i~~F~~~~ 235 (1281)
..++|+..|.++|.... ..+.|+||||++..+++.|...|...|+.+..++| +++..+|+.+++.|+++.
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~ 419 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE 419 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTS
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCC
Confidence 45889999999999876 57899999999999999999999999999999999 899999999999999865
Q ss_pred CCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhccccc
Q psy7773 236 SKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMD 314 (1281)
Q Consensus 236 ~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~~l~ 314 (1281)
.. +|++|.++|+|||++.|++||+||++|||..+.||+||+||.|| +.+|+|++.+|+|+.++..+..|..+.
T Consensus 420 ~~---vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~ 492 (494)
T 1wp9_A 420 FN---VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIM 492 (494)
T ss_dssp CS---EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC------
T ss_pred ce---EEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC---ceEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 43 47888999999999999999999999999999999999999998 899999999999999999999887553
No 54
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.79 E-value=3.1e-18 Score=211.97 Aligned_cols=117 Identities=14% Similarity=0.144 Sum_probs=102.2
Q ss_pred ccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEecc
Q psy7773 870 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 949 (1281)
Q Consensus 870 ~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~ 949 (1281)
...|+..|..++..+...+.+|||||......+.|...|...|+++..|+|.....+|..+...|.. +. ++|+|+
T Consensus 414 ~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~--g~---VlIATd 488 (844)
T 1tf5_A 414 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQK--GA---VTIATN 488 (844)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTST--TC---EEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCC--Ce---EEEeCC
Confidence 4578999999888777778889999999999999999999999999999999887777655555554 23 699999
Q ss_pred ccccccCcc--------cCCEEEEeCCCCChhhhhhHhHhHHhhCCCCce
Q psy7773 950 AGGLGLNLQ--------AADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEV 991 (1281)
Q Consensus 950 agg~GlNL~--------~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V 991 (1281)
++|+|+|+. +..+||+||.|-++..|.|++||++|.|.+-..
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s 538 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGIT 538 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeE
Confidence 999999999 778999999999999999999999999987654
No 55
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.79 E-value=2.4e-19 Score=216.66 Aligned_cols=93 Identities=16% Similarity=0.143 Sum_probs=85.1
Q ss_pred CCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeC
Q psy7773 888 KHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFD 967 (1281)
Q Consensus 888 ~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D 967 (1281)
+.++||||+....++.+...|...|+.+..+||.+ +..+++.|.++... +|+||+++++|||++. ++||+||
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g~~~---vLVaT~v~~~GiDip~-~~VI~~~ 259 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLTDWD---FVVTTDISEMGANFRA-GRVIDPR 259 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSSCCS---EEEECGGGGSSCCCCC-SEEEECC
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccCCce---EEEECCHHHhCcCCCC-CEEEECC
Confidence 55799999999999999999999999999999965 46799999987665 6999999999999999 9999998
Q ss_pred --------------------CCCChhhhhhHhHhHHhhCCC
Q psy7773 968 --------------------SDWNPHQDLQAQDRAHRIGQK 988 (1281)
Q Consensus 968 --------------------~~wnp~~~~Qa~gR~~RiGQ~ 988 (1281)
.|.++..|.|++||++|.|..
T Consensus 260 ~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~ 300 (451)
T 2jlq_A 260 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ 300 (451)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred CcccccccccccceeeecccccCCHHHHHHhccccCCCCCC
Confidence 899999999999999999973
No 56
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.77 E-value=3.4e-19 Score=222.97 Aligned_cols=97 Identities=15% Similarity=0.186 Sum_probs=86.8
Q ss_pred cCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEE-
Q psy7773 887 TKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVII- 965 (1281)
Q Consensus 887 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~- 965 (1281)
.+.++||||.....++.+...|...|+++..+|| .+|..+++.|.++... +|+||.++++|||++ +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F~~g~~~---VLVaTdv~e~GIDip-v~~VI~~ 480 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNR----KSYDTEYPKCKNGDWD---FVITTDISEMGANFG-ASRVIDC 480 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECS----SSHHHHGGGGGTCCCS---EEEECGGGGTTCCCC-CSEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeCh----HHHHHHHHHHHCCCce---EEEECchhhcceeeC-CcEEEEC
Confidence 4678999999999999999999999999999999 3899999999987665 599999999999999 999997
Q ss_pred -------------------eCCCCChhhhhhHhHhHHhh-CCCCce
Q psy7773 966 -------------------FDSDWNPHQDLQAQDRAHRI-GQKNEV 991 (1281)
Q Consensus 966 -------------------~D~~wnp~~~~Qa~gR~~Ri-GQ~k~V 991 (1281)
||.|.++..|.|++||++|. |+.-.+
T Consensus 481 g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~a 526 (673)
T 2wv9_A 481 RKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDE 526 (673)
T ss_dssp CEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEE
T ss_pred CCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEE
Confidence 67889999999999999999 454433
No 57
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.77 E-value=8.6e-19 Score=212.09 Aligned_cols=104 Identities=13% Similarity=0.103 Sum_probs=88.1
Q ss_pred CCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEE--
Q psy7773 888 KHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVII-- 965 (1281)
Q Consensus 888 ~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~-- 965 (1281)
+.++||||.....++.+...|...|+.+..++|. +|..+++.|.++... +|+||+++++|||++. ++||.
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~---iLVaT~v~~~GiDip~-~~VI~~G 261 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFGA-SRVIDCR 261 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCS---EEEESSCC---CCCSC-SEEEECC
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCce---EEEECChHHhCeecCC-CEEEECC
Confidence 5689999999999999999999999999999994 778899999987655 5999999999999999 99998
Q ss_pred ------------------eCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCC
Q psy7773 966 ------------------FDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVN 1000 (1281)
Q Consensus 966 ------------------~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~ 1000 (1281)
||.|.++..|.|++||++|.|.. +-..|.|++..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~-~G~~~~~~~~~ 313 (459)
T 2z83_A 262 KSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQ-VGDEYHYGGAT 313 (459)
T ss_dssp EECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTC-CCEEEEECSCC
T ss_pred cccccccccccccccccccCCCCCHHHHHHhccccCCCCCC-CCeEEEEEccc
Confidence 88999999999999999999963 23445666654
No 58
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.77 E-value=1.1e-18 Score=209.66 Aligned_cols=97 Identities=14% Similarity=0.140 Sum_probs=79.3
Q ss_pred cCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEE-
Q psy7773 887 TKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVII- 965 (1281)
Q Consensus 887 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~- 965 (1281)
.+.++||||.....++.+...|...|+++..+|| .+|..+++.|.++... +|+||.++++|||++ +++||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~---vLVaT~v~e~GiDip-v~~VI~~ 247 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPD---FILATDIAEMGANLC-VERVLDC 247 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCS---EEEESSSTTCCTTCC-CSEEEEC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCce---EEEECChhheeeccC-ceEEEeC
Confidence 3678999999999999999999999999999999 4788999999987666 699999999999999 999986
Q ss_pred ------------------eCCCCChhhhhhHhHhHHhhC-CCCce
Q psy7773 966 ------------------FDSDWNPHQDLQAQDRAHRIG-QKNEV 991 (1281)
Q Consensus 966 ------------------~D~~wnp~~~~Qa~gR~~RiG-Q~k~V 991 (1281)
||.|.++..|.|++||++|.| +...+
T Consensus 248 g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~ 292 (440)
T 1yks_A 248 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDS 292 (440)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEE
T ss_pred CccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceE
Confidence 899999999999999999985 44333
No 59
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.76 E-value=7.3e-17 Score=199.04 Aligned_cols=117 Identities=15% Similarity=0.083 Sum_probs=102.1
Q ss_pred ccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEecc
Q psy7773 870 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 949 (1281)
Q Consensus 870 ~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~ 949 (1281)
...|+.+|...+..+...+..|||||......+.|...|...|+++..|+|.....++.-+...|..+ . ++|+|+
T Consensus 442 ~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~---VtIATn 516 (922)
T 1nkt_A 442 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--G---VTVATN 516 (922)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--C---EEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--e---EEEecc
Confidence 35699999998888777888999999999999999999999999999999998766666666677653 3 699999
Q ss_pred ccccccCcccC----------------------------------------------------CEEEEeCCCCChhhhhh
Q psy7773 950 AGGLGLNLQAA----------------------------------------------------DTVIIFDSDWNPHQDLQ 977 (1281)
Q Consensus 950 agg~GlNL~~a----------------------------------------------------d~VI~~D~~wnp~~~~Q 977 (1281)
.+|+|+|+... .+||.||.|-++..|.|
T Consensus 517 mAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~q 596 (922)
T 1nkt_A 517 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 596 (922)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred hhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHH
Confidence 99999999864 49999999999999999
Q ss_pred HhHhHHhhCCCCce
Q psy7773 978 AQDRAHRIGQKNEV 991 (1281)
Q Consensus 978 a~gR~~RiGQ~k~V 991 (1281)
++||++|.|..-..
T Consensus 597 r~GRTGRqGdpG~s 610 (922)
T 1nkt_A 597 LRGRSGRQGDPGES 610 (922)
T ss_dssp HHHTSSGGGCCEEE
T ss_pred HhcccccCCCCeeE
Confidence 99999999986543
No 60
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.76 E-value=7.5e-18 Score=207.79 Aligned_cols=118 Identities=12% Similarity=0.085 Sum_probs=104.4
Q ss_pred ccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEecc
Q psy7773 870 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 949 (1281)
Q Consensus 870 ~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~ 949 (1281)
...|+.+|...+..+...+..|||||......+.|...|...|+++..|+|.....+|.-+...|..+ . ++|+|+
T Consensus 423 ~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~---VtIATn 497 (853)
T 2fsf_A 423 EAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--A---VTIATN 497 (853)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--C---EEEEES
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--e---EEEecc
Confidence 45799999999988777888999999999999999999999999999999998877777777788764 3 699999
Q ss_pred ccccccCcccC-------------------------------------CEEEEeCCCCChhhhhhHhHhHHhhCCCCceE
Q psy7773 950 AGGLGLNLQAA-------------------------------------DTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVR 992 (1281)
Q Consensus 950 agg~GlNL~~a-------------------------------------d~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~ 992 (1281)
.+|+|+|+... .+||.||.|-++..|.|++||++|.|..-...
T Consensus 498 mAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~ 577 (853)
T 2fsf_A 498 MAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSR 577 (853)
T ss_dssp CCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEE
T ss_pred cccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEE
Confidence 99999999863 59999999999999999999999999876543
No 61
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.76 E-value=1.4e-18 Score=196.72 Aligned_cols=164 Identities=17% Similarity=0.199 Sum_probs=122.8
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHCC--C
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWAP--S 620 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~p--~ 620 (1281)
.+|+|||.+++.+++. +.++||+++||+|||+++++++..++... .+++|||||. +++.||..++.+|.. .
T Consensus 112 ~~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred cCccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 4899999999998876 35689999999999999988887766432 3589999998 566999999999964 3
Q ss_pred CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEE
Q psy7773 621 ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVL 700 (1281)
Q Consensus 621 ~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rll 700 (1281)
..+..+.|...... ......+|+|+||+.+.+....+ ...|++|||||||++.+. .+...+..+....++++
T Consensus 186 ~~~~~~~~~~~~~~-----~~~~~~~I~v~T~~~l~~~~~~~-~~~~~~vIiDEaH~~~~~--~~~~il~~~~~~~~~l~ 257 (282)
T 1rif_A 186 AMIKKIGGGASKDD-----KYKNDAPVVVGTWQTVVKQPKEW-FSQFGMMMNDECHLATGK--SISSIISGLNNCMFKFG 257 (282)
T ss_dssp GGEEECSTTCSSTT-----CCCTTCSEEEECHHHHTTSCGGG-GGGEEEEEEETGGGCCHH--HHHHHTTTCTTCCEEEE
T ss_pred ceEEEEeCCCcchh-----hhccCCcEEEEchHHHHhhHHHH-HhhCCEEEEECCccCCcc--cHHHHHHHhhcCCeEEE
Confidence 35555544321110 12256899999999998764422 237899999999999864 44455555446788999
Q ss_pred eecCCCCCChhHHHHHHhhhcC
Q psy7773 701 LTGTPLQNKLPELWALLNFLLP 722 (1281)
Q Consensus 701 LTgTPl~n~~~el~~ll~fl~p 722 (1281)
|||||.. ...+++.+..++.|
T Consensus 258 lSATp~~-~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 258 LSGSLRD-GKANIMQYVGMFGE 278 (282)
T ss_dssp ECSSCCT-TSTTHHHHHHHHCE
T ss_pred EeCCCCC-cchHHHHHHHhcCC
Confidence 9999964 45778888877765
No 62
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.75 E-value=4.1e-18 Score=212.03 Aligned_cols=103 Identities=13% Similarity=0.112 Sum_probs=89.3
Q ss_pred cCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEE---
Q psy7773 887 TKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTV--- 963 (1281)
Q Consensus 887 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~V--- 963 (1281)
.+.++||||.....++.+...|...|+++..+||. +|.++++.|.++... +|+||+++++|||++ +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~---VLVaTdv~~rGiDi~-v~~VId~ 425 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWD---FVVTTDISEMGANFR-AGRVIDP 425 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCS---EEEECGGGGTTCCCC-CSEEEEC
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcE---EEEECcHHHcCcccC-ceEEEEC
Confidence 36689999999999999999999999999999983 788999999886655 699999999999996 8888
Q ss_pred -----------------EEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEe
Q psy7773 964 -----------------IIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLIT 998 (1281)
Q Consensus 964 -----------------I~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~ 998 (1281)
|+||.|-++..|+|++||++|.|...- ..|.|++
T Consensus 426 g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G-~ai~l~~ 476 (618)
T 2whx_A 426 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED-DQYVFSG 476 (618)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCC-EEEEECS
T ss_pred cceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCC-eEEEEcc
Confidence 778888999999999999999986433 3456665
No 63
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.74 E-value=1.1e-17 Score=174.27 Aligned_cols=124 Identities=18% Similarity=0.298 Sum_probs=111.7
Q ss_pred cccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEec
Q psy7773 869 RTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLST 948 (1281)
Q Consensus 869 ~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT 948 (1281)
..+.|+..|..+|... .+.++||||++...++.|...|...|+++..++|+++..+|..+++.|+++... +|++|
T Consensus 14 ~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vLvaT 88 (172)
T 1t5i_A 14 KDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVAT 88 (172)
T ss_dssp CGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEES
T ss_pred ChHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc---EEEEC
Confidence 3567999999999865 467899999999999999999999999999999999999999999999987655 58999
Q ss_pred cccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeC
Q psy7773 949 RAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITV 999 (1281)
Q Consensus 949 ~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~ 999 (1281)
+++++|||++.+++||+||+|||+..|.|++||++|.|+...+ +.|++.
T Consensus 89 ~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~ 137 (172)
T 1t5i_A 89 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA--ITFVSD 137 (172)
T ss_dssp SCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEE--EEEECS
T ss_pred CchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEE--EEEEcC
Confidence 9999999999999999999999999999999999999987654 444543
No 64
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.73 E-value=2.4e-17 Score=205.54 Aligned_cols=107 Identities=23% Similarity=0.304 Sum_probs=94.9
Q ss_pred EEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCcccCCEEEEeCC--
Q psy7773 891 VLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDS-- 968 (1281)
Q Consensus 891 vLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL~~ad~VI~~D~-- 968 (1281)
.||||.....++.+...|...|+.+..+||+++..+|..+++.|+++++.+.| |+||.+++.|||+ .+++||+++.
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~V-LVATdi~e~GlDi-~v~~VI~~~~~k 400 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKI-LVATDAIGMGLNL-SIRRIIFYSLIK 400 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCE-EEECGGGGSSCCC-CBSEEEESCSBC
T ss_pred CEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEE-EEeCcHHHCCcCc-CccEEEECCccc
Confidence 47888889999999999999999999999999999999999999985544554 9999999999999 9999999999
Q ss_pred ------------CCChhhhhhHhHhHHhhCCC-CceEEEEEEeC
Q psy7773 969 ------------DWNPHQDLQAQDRAHRIGQK-NEVRVLRLITV 999 (1281)
Q Consensus 969 ------------~wnp~~~~Qa~gR~~RiGQ~-k~V~V~rli~~ 999 (1281)
|+++..+.|+.|||+|.|+. ..-.||.+...
T Consensus 401 ~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 401 PSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp -----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred cccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 88999999999999999987 34566666543
No 65
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.73 E-value=9.1e-18 Score=206.57 Aligned_cols=263 Identities=18% Similarity=0.142 Sum_probs=172.4
Q ss_pred cCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCCCCcEEEEeCCHHHHHHHHhhh
Q psy7773 562 NNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAPSANVVAYKGSPLARRALQGRM 640 (1281)
Q Consensus 562 ~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~ 640 (1281)
.++.+.|+..+||+|||.++...+.. . ...+||++|...+ .|+...+.+.+ +..+....|...
T Consensus 230 ~~~~~vlv~ApTGSGKT~a~~l~ll~---~---g~~vLVl~PTReLA~Qia~~l~~~~-g~~vg~~vG~~~--------- 293 (666)
T 3o8b_A 230 QSFQVAHLHAPTGSGKSTKVPAAYAA---Q---GYKVLVLNPSVAATLGFGAYMSKAH-GIDPNIRTGVRT--------- 293 (666)
T ss_dssp SSCEEEEEECCTTSCTTTHHHHHHHH---T---TCCEEEEESCHHHHHHHHHHHHHHH-SCCCEEECSSCE---------
T ss_pred HcCCeEEEEeCCchhHHHHHHHHHHH---C---CCeEEEEcchHHHHHHHHHHHHHHh-CCCeeEEECcEe---------
Confidence 35667889999999999876654432 1 2489999999776 77777776655 334444444321
Q ss_pred ccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchH-HHHHHHhhhccCc--EEEeecCCCCCChhHHHHHH
Q psy7773 641 KNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCK-LTQTLNTFYNSSH--RVLLTGTPLQNKLPELWALL 717 (1281)
Q Consensus 641 ~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~-~~~~l~~~~~~~~--rllLTgTPl~n~~~el~~ll 717 (1281)
.....+|+|+|++.|.... .+...++++|||||||.+...... +..++..+..... .++|||||-..
T Consensus 294 ~~~~~~IlV~TPGrLl~~~-~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~~--------- 363 (666)
T 3o8b_A 294 ITTGAPVTYSTYGKFLADG-GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGS--------- 363 (666)
T ss_dssp ECCCCSEEEEEHHHHHHTT-SCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTTC---------
T ss_pred ccCCCCEEEECcHHHHhCC-CcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCcc---------
Confidence 3467899999999996543 344457899999999877533222 3333333312222 57789998531
Q ss_pred hhhcCCCCCChhHHHHHhcccccCCcccccCCHHHHHHHHHHHHHhhhHHHHHHhHHHHhhcCCCceEEEEEcCCCHHHH
Q psy7773 718 NFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQK 797 (1281)
Q Consensus 718 ~fl~p~~~~~~~~f~~~f~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~lP~k~~~~v~~~ls~~q~ 797 (1281)
+. . ..|... .+......
T Consensus 364 -------i~----------~-----------------------------------------~~p~i~--~v~~~~~~--- 380 (666)
T 3o8b_A 364 -------VT----------V-----------------------------------------PHPNIE--EVALSNTG--- 380 (666)
T ss_dssp -------CC----------C-----------------------------------------CCTTEE--EEECBSCS---
T ss_pred -------cc----------c-----------------------------------------CCcceE--EEeecccc---
Confidence 00 0 001100 00000000
Q ss_pred HHHHHHHhcccccccCCccCCCCCCchHHHHHHHHHHHHhcCCccchhhhHHHHHhhhcCCCccccCCccccccchHHHH
Q psy7773 798 LLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELL 877 (1281)
Q Consensus 798 ~lY~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L 877 (1281)
. -++.. ... .
T Consensus 381 -----------------------~------------------i~~~~---------------------~~~----~---- 390 (666)
T 3o8b_A 381 -----------------------E------------------IPFYG---------------------KAI----P---- 390 (666)
T ss_dssp -----------------------S------------------EEETT---------------------EEE----C----
T ss_pred -----------------------h------------------hHHHH---------------------hhh----h----
Confidence 0 00000 000 0
Q ss_pred HHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCc
Q psy7773 878 DRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNL 957 (1281)
Q Consensus 878 ~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL 957 (1281)
+. ...+.++|||+.....++.+...|...|+++..+||+++..+ |.++.. . +|++|+++++|||+
T Consensus 391 ---l~--~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~--~-VLVATdVaerGIDI 455 (666)
T 3o8b_A 391 ---IE--AIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGD--V-VVVATDALMTGYTG 455 (666)
T ss_dssp ---GG--GSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSC--E-EEEECTTHHHHCCC
T ss_pred ---hh--hccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCC--c-EEEECChHHccCCC
Confidence 00 114678999999999999999999999999999999999875 433332 3 69999999999998
Q ss_pred ccCCEEE----------EeC-----------CCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHH
Q psy7773 958 QAADTVI----------IFD-----------SDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVE 1003 (1281)
Q Consensus 958 ~~ad~VI----------~~D-----------~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiE 1003 (1281)
. +++|| +|| .|.++..|+||+||++| |..-. |.|++.....
T Consensus 456 d-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~---i~lvt~~e~~ 517 (666)
T 3o8b_A 456 D-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI---YRFVTPGERP 517 (666)
T ss_dssp C-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE---EEESCCCCBC
T ss_pred C-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE---EEEEecchhh
Confidence 6 99988 677 78899999999999999 65533 7888776543
No 66
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.73 E-value=7.5e-18 Score=214.94 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=95.0
Q ss_pred cCCeEEEEechHHHHHHHHHHHHH-----------CCCcEEEEeCCCChHHHHHHHHhhc-----CCCCCeEEEEEeccc
Q psy7773 887 TKHRVLMFCQMTQLMTILEDYFIW-----------RDFSYLRLDGTTKSEDRGELLRKFN-----EPESKYFIFLLSTRA 950 (1281)
Q Consensus 887 ~~~kvLIFsq~~~~ld~L~~~L~~-----------~g~~~~~l~G~~~~~~R~~~i~~Fn-----~~~~~~~v~LlsT~a 950 (1281)
.+.++|||+.....++.+...|.. .++.+..++|+++..+|..+++.|. .+ .+. +|+||.+
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g--~~k-VlVAT~i 378 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRP--GRK-VVISTNI 378 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSC--CEE-EEEECTH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCC--ceE-EEEeCcH
Confidence 467899999999999999888874 5888999999999999999999998 43 344 5999999
Q ss_pred cccccCcccCCEEEEeCC------------------CCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCH
Q psy7773 951 GGLGLNLQAADTVIIFDS------------------DWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSV 1002 (1281)
Q Consensus 951 gg~GlNL~~ad~VI~~D~------------------~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~ti 1002 (1281)
++.|||++++++||.++. |.+...+.|+.|||+|. ++-.+|+|++....
T Consensus 379 ae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 379 AETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp HHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred HHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 999999999999999776 88999999999999998 44567888875444
No 67
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.73 E-value=1.5e-17 Score=171.70 Aligned_cols=133 Identities=23% Similarity=0.416 Sum_probs=115.6
Q ss_pred cccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEec
Q psy7773 869 RTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLST 948 (1281)
Q Consensus 869 ~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT 948 (1281)
..+.|+..|..+|... .+.++||||+....++.+...|...|+++..++|+++..+|..+++.|+++... +|++|
T Consensus 18 ~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vlv~T 92 (163)
T 2hjv_A 18 REENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYR---YLVAT 92 (163)
T ss_dssp CGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEC
T ss_pred ChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEC
Confidence 4578999999999764 567899999999999999999999999999999999999999999999987655 58999
Q ss_pred cccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHHHHHHHHH
Q psy7773 949 RAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAA 1010 (1281)
Q Consensus 949 ~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiEe~I~~~~ 1010 (1281)
+++++|+|++.+++||+||+|||+..|.|++||++|.|+...+ +.|++.. |...+...
T Consensus 93 ~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~--~~~~~~~i 150 (163)
T 2hjv_A 93 DVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKA--ISFVTAF--EKRFLADI 150 (163)
T ss_dssp GGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEE--EEEECGG--GHHHHHHH
T ss_pred ChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceE--EEEecHH--HHHHHHHH
Confidence 9999999999999999999999999999999999999987654 4555543 33444433
No 68
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.72 E-value=8.1e-18 Score=177.39 Aligned_cols=127 Identities=21% Similarity=0.317 Sum_probs=99.4
Q ss_pred ccccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEe
Q psy7773 868 YRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLS 947 (1281)
Q Consensus 868 ~~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~Lls 947 (1281)
+..+.|+..|..+|.... .+.++||||+....++.|...|...|+.+..++|+++..+|..+++.|+++... +|++
T Consensus 27 v~~~~K~~~L~~ll~~~~-~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vLva 102 (185)
T 2jgn_A 27 VEESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP---ILVA 102 (185)
T ss_dssp CCGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSS---EEEE
T ss_pred eCcHHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCe---EEEE
Confidence 346789999999998753 567899999999999999999999999999999999999999999999986655 5899
Q ss_pred ccccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCC
Q psy7773 948 TRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVN 1000 (1281)
Q Consensus 948 T~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~ 1000 (1281)
|+++++|||++.+++||+||+|||+..|.|++||++|.|++.. ++.|++..
T Consensus 103 T~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~--~~~~~~~~ 153 (185)
T 2jgn_A 103 TAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL--ATSFFNER 153 (185)
T ss_dssp EC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEE--EEEEECGG
T ss_pred cChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcE--EEEEEchh
Confidence 9999999999999999999999999999999999999997654 45556543
No 69
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.72 E-value=4.1e-16 Score=212.61 Aligned_cols=160 Identities=15% Similarity=0.161 Sum_probs=103.8
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHH-HCC--C
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEK-WAP--S 620 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~-~~p--~ 620 (1281)
.+.|.|.+++.-++ +.+.|.+++.+||+|||+++...|...+... ..+.+|+|+|..-| .+-..++.+ |.+ +
T Consensus 926 ~fnpiQ~q~~~~l~---~~~~nvlv~APTGSGKTliaelail~~l~~~-~~~kavyi~P~raLa~q~~~~~~~~f~~~~g 1001 (1724)
T 4f92_B 926 FFNPIQTQVFNTVY---NSDDNVFVGAPTGSGKTICAEFAILRMLLQS-SEGRCVYITPMEALAEQVYMDWYEKFQDRLN 1001 (1724)
T ss_dssp BCCHHHHHHHHHHH---SCCSCEEEECCTTSCCHHHHHHHHHHHHHHC-TTCCEEEECSCHHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHHh---cCCCcEEEEeCCCCCchHHHHHHHHHHHHhC-CCCEEEEEcChHHHHHHHHHHHHHHhchhcC
Confidence 58899999986654 5677899999999999999876666555333 34689999997555 555556644 332 5
Q ss_pred CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccc----cCceeEEEEeCCccccccchHHHH-HHHhh---
Q psy7773 621 ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLS----KIQWKCMIIDEGHRMKNHHCKLTQ-TLNTF--- 692 (1281)
Q Consensus 621 ~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~----~~~w~~vIvDEaHr~kn~~s~~~~-~l~~~--- 692 (1281)
.++..+.|......... ...+|+|||++.+........ -.+..+|||||+|.+......... .+..+
T Consensus 1002 ~~V~~ltGd~~~~~~~~-----~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i 1076 (1724)
T 4f92_B 1002 KKVVLLTGETSTDLKLL-----GKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYI 1076 (1724)
T ss_dssp CCEEECCSCHHHHHHHH-----HHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCcchhhc-----CCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHH
Confidence 77888888755432221 346899999998743211111 115689999999999764333222 22111
Q ss_pred ----hccCcEEEeecCCCCCChhHHHH
Q psy7773 693 ----YNSSHRVLLTGTPLQNKLPELWA 715 (1281)
Q Consensus 693 ----~~~~~rllLTgTPl~n~~~el~~ 715 (1281)
.+..+.++||||- .|..++..
T Consensus 1077 ~~~~~~~~riI~lSATl--~N~~dla~ 1101 (1724)
T 4f92_B 1077 SSQIERPIRIVALSSSL--SNAKDVAH 1101 (1724)
T ss_dssp HHTTSSCCEEEEEESCB--TTHHHHHH
T ss_pred HhhcCCCceEEEEeCCC--CCHHHHHH
Confidence 1234678999993 23445443
No 70
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.71 E-value=5.4e-18 Score=206.98 Aligned_cols=232 Identities=13% Similarity=0.156 Sum_probs=153.1
Q ss_pred HHHHHhhhhHHhhchhhhhhc-CCCceEEEEEeCCCHHHHHHHHHHHHhhhhhccccccCCCCCCchHHHHHHHHHHHHH
Q psy7773 56 RLHKVLRPFLLRRLKKEVESQ-LPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKL 134 (1281)
Q Consensus 56 ~L~~~l~~~~lRR~k~dv~~~-LP~k~~~~v~v~ls~~Q~~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~~ 134 (1281)
.|..++.+.+.++...++... +|+.....+.+++++.++..|+.+.......................+. ...
T Consensus 237 ~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------~~~ 310 (472)
T 2fwr_A 237 ILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIV------MAS 310 (472)
T ss_dssp SHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTT------TTT
T ss_pred HHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHH------HHh
Confidence 356677787777777776443 7888888999999999999998765433221111100000000000000 000
Q ss_pred cCCCcCchhhHHHHhhhhcCCCccccCCcccccCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEE
Q psy7773 135 CNHPFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLR 214 (1281)
Q Consensus 135 ~~hP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~ 214 (1281)
+..+............. .-....+.|+..|.++|.. ..+.++||||++...++.|...|. +..
T Consensus 311 ~~~~~~~~~~~~~~~~~----------~~~~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~ 373 (472)
T 2fwr_A 311 GYDERAYEALRAWEEAR----------RIAFNSKNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPA 373 (472)
T ss_dssp CCSSSSSTTTHHHHHHH----------HHHHSCSHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCB
T ss_pred ccCHHHHHHHHHHHHHH----------HHhhcChHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cce
Confidence 00000000000000000 0012246899999999987 467899999999999999999883 456
Q ss_pred ecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCC-CeEEEEEE
Q psy7773 215 LDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQK-NEVRVLRL 293 (1281)
Q Consensus 215 ~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~-~~V~v~~l 293 (1281)
++|+++..+|..+++.|+++..+ +|++|.++++|+|++.+++||+||++|||..+.|++||++|.||. +.|.||.|
T Consensus 374 ~~g~~~~~~R~~~~~~F~~g~~~---vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~l 450 (472)
T 2fwr_A 374 ITHRTSREEREEILEGFRTGRFR---AIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYEL 450 (472)
T ss_dssp CCSSSCSHHHHTHHHHHHHSSCS---BCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEE
T ss_pred eeCCCCHHHHHHHHHHHhCCCCC---EEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEE
Confidence 89999999999999999985544 478889999999999999999999999999999999999999998 78999999
Q ss_pred EeccchHHHHHHHHhhcccc
Q psy7773 294 ITVNSVEERILAAARYKLNM 313 (1281)
Q Consensus 294 ~~~~Tiee~i~~~~~~K~~l 313 (1281)
++.+|+|+.+..+...|...
T Consensus 451 v~~~t~ee~~~~~r~~~~~~ 470 (472)
T 2fwr_A 451 ISRGTGEVNTARRRKNAAKG 470 (472)
T ss_dssp EECSCC--------------
T ss_pred EeCCCchHHHHHHHHHhhcc
Confidence 99999999999888766543
No 71
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.71 E-value=1e-15 Score=192.48 Aligned_cols=125 Identities=22% Similarity=0.197 Sum_probs=108.1
Q ss_pred chHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEecccc
Q psy7773 872 GKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAG 951 (1281)
Q Consensus 872 ~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~ag 951 (1281)
+++..|...|..+...+.+|||||.....++.|..+|...|+++..+||.++..+|..+++.|..+... +|++|.++
T Consensus 429 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~---VLVaT~~l 505 (661)
T 2d7d_A 429 GQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYD---VLVGINLL 505 (661)
T ss_dssp THHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCS---EEEESCCC
T ss_pred chHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeE---EEEecchh
Confidence 445555555666666788999999999999999999999999999999999999999999999886555 59999999
Q ss_pred ccccCcccCCEEEEeCC-----CCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCH
Q psy7773 952 GLGLNLQAADTVIIFDS-----DWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSV 1002 (1281)
Q Consensus 952 g~GlNL~~ad~VI~~D~-----~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~ti 1002 (1281)
++|+|++.+++||++|. |+++..|+|++||++|. +.-.++.|++..+.
T Consensus 506 ~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~---~~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 506 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN---AEGRVIMYADKITK 558 (661)
T ss_dssp STTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS---TTCEEEEECSSCCH
T ss_pred hCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC---CCCEEEEEEeCCCH
Confidence 99999999999999998 89999999999999996 34456667776653
No 72
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.70 E-value=4.7e-17 Score=178.75 Aligned_cols=143 Identities=22% Similarity=0.282 Sum_probs=110.2
Q ss_pred cccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHCC
Q psy7773 541 MVNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWAP 619 (1281)
Q Consensus 541 ~~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~p 619 (1281)
.....|+|||.+++.+++. +.++|++++||+|||+++++++..+ .+++|||||. +++.||..++.+|
T Consensus 89 ~~~~~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~-- 156 (237)
T 2fz4_A 89 DAEISLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF-- 156 (237)
T ss_dssp CCCCCCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG--
T ss_pred cCCCCcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC--
Confidence 3456899999999987653 3458999999999999998887653 4689999998 6669999999994
Q ss_pred CCc-EEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcE
Q psy7773 620 SAN-VVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHR 698 (1281)
Q Consensus 620 ~~~-~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~r 698 (1281)
+.. +..+.|... ...+|+|+||+.+......+. ..|++|||||||++.+.. ++.+...++..++
T Consensus 157 ~~~~v~~~~g~~~-----------~~~~i~v~T~~~l~~~~~~~~-~~~~llIiDEaH~l~~~~---~~~i~~~~~~~~~ 221 (237)
T 2fz4_A 157 GEEYVGEFSGRIK-----------ELKPLTVSTYDSAYVNAEKLG-NRFMLLIFDEVHHLPAES---YVQIAQMSIAPFR 221 (237)
T ss_dssp CGGGEEEESSSCB-----------CCCSEEEEEHHHHHHTHHHHT-TTCSEEEEECSSCCCTTT---HHHHHHTCCCSEE
T ss_pred CCCeEEEEeCCCC-----------CcCCEEEEeHHHHHhhHHHhc-ccCCEEEEECCccCCChH---HHHHHHhccCCEE
Confidence 456 777777532 357899999999987665443 359999999999998765 3334444578899
Q ss_pred EEeecCCCCCCh
Q psy7773 699 VLLTGTPLQNKL 710 (1281)
Q Consensus 699 llLTgTPl~n~~ 710 (1281)
|+|||||..++-
T Consensus 222 l~LSATp~r~D~ 233 (237)
T 2fz4_A 222 LGLTATFEREDG 233 (237)
T ss_dssp EEEEESCC----
T ss_pred EEEecCCCCCCC
Confidence 999999987653
No 73
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.70 E-value=5.3e-17 Score=168.09 Aligned_cols=125 Identities=20% Similarity=0.346 Sum_probs=108.4
Q ss_pred chHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEecccc
Q psy7773 872 GKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAG 951 (1281)
Q Consensus 872 ~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~ag 951 (1281)
.|+..|..++... .+.++||||+....++.+...|...|+.+..++|+++..+|..+++.|+++... +|++|+++
T Consensus 16 ~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~ 90 (165)
T 1fuk_A 16 YKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTDLL 90 (165)
T ss_dssp GHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEEGGG
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE---EEEEcChh
Confidence 3999999999875 467899999999999999999999999999999999999999999999986655 58999999
Q ss_pred ccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCHH
Q psy7773 952 GLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVE 1003 (1281)
Q Consensus 952 g~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~tiE 1003 (1281)
++|+|++.+++||+||+|||+..|.|++||++|.|+... ++.|++.+..+
T Consensus 91 ~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~--~~~~~~~~~~~ 140 (165)
T 1fuk_A 91 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV--AINFVTNEDVG 140 (165)
T ss_dssp TTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CE--EEEEEETTTHH
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEEcchHHH
Confidence 999999999999999999999999999999999997654 56667766543
No 74
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.70 E-value=3.8e-17 Score=173.00 Aligned_cols=124 Identities=20% Similarity=0.319 Sum_probs=108.1
Q ss_pred cccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEec
Q psy7773 869 RTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLST 948 (1281)
Q Consensus 869 ~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT 948 (1281)
..+.|+..|..+|.. .+.++||||++...++.|..+|...|+++..++|+++..+|..+++.|+++... +|++|
T Consensus 38 ~~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~---vLvaT 111 (191)
T 2p6n_A 38 KEEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKD---VLVAT 111 (191)
T ss_dssp CGGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCS---EEEEC
T ss_pred ChHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCE---EEEEc
Confidence 456799998888865 356899999999999999999999999999999999999999999999986655 58999
Q ss_pred cccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCC
Q psy7773 949 RAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVN 1000 (1281)
Q Consensus 949 ~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~ 1000 (1281)
+++++|||++.+++||+||+|||+..|.|++||++|.|++.. ++.|++..
T Consensus 112 ~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~--~i~l~~~~ 161 (191)
T 2p6n_A 112 DVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGI--ATTFINKA 161 (191)
T ss_dssp HHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCE--EEEEECTT
T ss_pred CchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcE--EEEEEcCc
Confidence 999999999999999999999999999999999999999764 45556654
No 75
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.68 E-value=2.5e-16 Score=164.00 Aligned_cols=136 Identities=18% Similarity=0.297 Sum_probs=115.4
Q ss_pred cCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecc
Q psy7773 167 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 246 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~ 246 (1281)
.+.|+..|..+|... .+.++||||++....+.|...|...|+++..+||+++..+|..+++.|+++... +|++|.
T Consensus 15 ~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vLvaT~ 89 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVATN 89 (172)
T ss_dssp GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEESS
T ss_pred hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCc---EEEECC
Confidence 467999999999865 567999999999999999999999999999999999999999999999986544 577889
Q ss_pred ccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhc
Q psy7773 247 AGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYK 310 (1281)
Q Consensus 247 ~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K 310 (1281)
++++|+|++.+++||+||+|||+..+.|++||++|.|+...+ +.|+... -+..++......
T Consensus 90 ~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~-~~~~~~~~l~~~ 150 (172)
T 1t5i_A 90 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA--ITFVSDE-NDAKILNDVQDR 150 (172)
T ss_dssp CCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEE--EEEECSH-HHHHHHHHHHHH
T ss_pred chhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEE--EEEEcCh-hHHHHHHHHHHH
Confidence 999999999999999999999999999999999999986544 4444433 244444444443
No 76
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.68 E-value=7.2e-16 Score=210.23 Aligned_cols=160 Identities=17% Similarity=0.143 Sum_probs=103.1
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC--------CCCCEEEEeCCccH-HHHHHHH
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKK--------NLGPYLVIVPLSTL-SNWVLEF 614 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~--------~~~~~LIV~P~s~l-~~W~~E~ 614 (1281)
.+|.+.|..++..++ ..+.|.+++.+||+|||++|...+...+.... ..+.+|+|+|..-| .+-..+|
T Consensus 78 ~~ln~iQs~~~~~al---~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l 154 (1724)
T 4f92_B 78 KTLNRIQSKLYRAAL---ETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSF 154 (1724)
T ss_dssp SBCCHHHHHTHHHHH---TCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH---cCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHH
Confidence 479999999887655 46789999999999999998766655443321 23468999997554 6666777
Q ss_pred HHHCC--CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhc------ccccccCceeEEEEeCCccccccchHHH
Q psy7773 615 EKWAP--SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKD------KSVLSKIQWKCMIIDEGHRMKNHHCKLT 686 (1281)
Q Consensus 615 ~~~~p--~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~------~~~l~~~~w~~vIvDEaHr~kn~~s~~~ 686 (1281)
.+.+. ++.|..+.|..... .......+|+|||++.+..- ...+. ...+|||||+|.+........
T Consensus 155 ~~~~~~~gi~V~~~tGd~~~~-----~~~~~~~~IlVtTpEkld~llr~~~~~~~l~--~v~~vIiDEvH~l~d~RG~~l 227 (1724)
T 4f92_B 155 GKRLATYGITVAELTGDHQLC-----KEEISATQIIVCTPEKWDIITRKGGERTYTQ--LVRLIILDEIHLLHDDRGPVL 227 (1724)
T ss_dssp HHHHTTTTCCEEECCSSCSSC-----CTTGGGCSEEEECHHHHHHHTTSSTTHHHHT--TEEEEEETTGGGGGSTTHHHH
T ss_pred HHHHhhCCCEEEEEECCCCCC-----ccccCCCCEEEECHHHHHHHHcCCccchhhc--CcCEEEEecchhcCCccHHHH
Confidence 65543 46777788763211 01124579999999986321 11122 468999999998865322221
Q ss_pred -----HHH---HhhhccCcEEEeecCCCCCChhHHHH
Q psy7773 687 -----QTL---NTFYNSSHRVLLTGTPLQNKLPELWA 715 (1281)
Q Consensus 687 -----~~l---~~~~~~~~rllLTgTPl~n~~~el~~ 715 (1281)
+.+ .......++++||||- .|+.++..
T Consensus 228 E~~l~rl~~~~~~~~~~~riI~LSATl--~N~~dvA~ 262 (1724)
T 4f92_B 228 EALVARAIRNIEMTQEDVRLIGLSATL--PNYEDVAT 262 (1724)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEEEECSC--TTHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEeccc--CCHHHHHH
Confidence 111 1111345678999993 24555443
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.68 E-value=2.7e-16 Score=162.35 Aligned_cols=136 Identities=23% Similarity=0.397 Sum_probs=116.0
Q ss_pred ccCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEec
Q psy7773 166 RTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLST 245 (1281)
Q Consensus 166 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st 245 (1281)
..+.|+..|..+|... .+.++||||++....+.|...|...|+.+..+||+++..+|..+++.|+++... +|++|
T Consensus 18 ~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~---vlv~T 92 (163)
T 2hjv_A 18 REENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYR---YLVAT 92 (163)
T ss_dssp CGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEC
T ss_pred ChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEC
Confidence 3478999999999763 567999999999999999999999999999999999999999999999986544 57888
Q ss_pred cccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhc
Q psy7773 246 RAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYK 310 (1281)
Q Consensus 246 ~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K 310 (1281)
.++++|+|++.+++||+||+||||..+.|++||++|.|+... ++.|++.. |...+......
T Consensus 93 ~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~--~~~~~~~~--~~~~~~~i~~~ 153 (163)
T 2hjv_A 93 DVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGK--AISFVTAF--EKRFLADIEEY 153 (163)
T ss_dssp GGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEE--EEEEECGG--GHHHHHHHHHH
T ss_pred ChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCce--EEEEecHH--HHHHHHHHHHH
Confidence 999999999999999999999999999999999999998654 45555544 44444444433
No 78
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.67 E-value=2.9e-16 Score=164.21 Aligned_cols=123 Identities=23% Similarity=0.360 Sum_probs=106.9
Q ss_pred chHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEecccc
Q psy7773 872 GKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAG 951 (1281)
Q Consensus 872 ~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~ag 951 (1281)
.|+..|..++... .+.++||||+....++.|...|...|+.+..++|+++..+|..+++.|+++... +|++|+++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~---vLvaT~~~ 94 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEK---VLITTNVC 94 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCS---EEEECCSC
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEecch
Confidence 4899999988775 467899999999999999999999999999999999999999999999986655 59999999
Q ss_pred ccccCcccCCEEEEeCCC------CChhhhhhHhHhHHhhCCCCceEEEEEEeCCC
Q psy7773 952 GLGLNLQAADTVIIFDSD------WNPHQDLQAQDRAHRIGQKNEVRVLRLITVNS 1001 (1281)
Q Consensus 952 g~GlNL~~ad~VI~~D~~------wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~t 1001 (1281)
++|||++.+++||+||+| +++..|.|++||++|.|+. -.++.|++.+.
T Consensus 95 ~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~ 148 (175)
T 2rb4_A 95 ARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE 148 (175)
T ss_dssp CTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG
T ss_pred hcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccch
Confidence 999999999999999999 7779999999999999965 45677777665
No 79
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.67 E-value=5.3e-14 Score=169.86 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=101.0
Q ss_pred ccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEecc
Q psy7773 870 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 949 (1281)
Q Consensus 870 ~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~ 949 (1281)
...|+..|...+......+.+|||||.+....+.|...|...|+++..++|.....+|.-+...|.. +. ++|+|+
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~--g~---VtVATd 530 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQK--GM---VTIATN 530 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHST--TC---EEEEET
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCC--Ce---EEEEcc
Confidence 3569999999998887788899999999999999999999999999999998655555444556654 23 699999
Q ss_pred ccccccCcc--------cCCEEEEeCCCCChhhhhhHhHhHHhhCCCCce
Q psy7773 950 AGGLGLNLQ--------AADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEV 991 (1281)
Q Consensus 950 agg~GlNL~--------~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V 991 (1281)
.+|+|+|+. +..+||++|.|-++..|.|++||++|.|.+-..
T Consensus 531 mAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a 580 (822)
T 3jux_A 531 MAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGES 580 (822)
T ss_dssp TTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEE
T ss_pred hhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeE
Confidence 999999998 667999999999999999999999999987653
No 80
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=166.13 Aligned_cols=126 Identities=21% Similarity=0.324 Sum_probs=97.8
Q ss_pred ccCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEec
Q psy7773 166 RTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLST 245 (1281)
Q Consensus 166 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st 245 (1281)
..+.|+..|.++|.... .+.++||||++...++.|...|...|+.+..++|+++..+|..+++.|+++... +|++|
T Consensus 28 ~~~~K~~~L~~ll~~~~-~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vLvaT 103 (185)
T 2jgn_A 28 EESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP---ILVAT 103 (185)
T ss_dssp CGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSS---EEEEE
T ss_pred CcHHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEc
Confidence 45789999999998743 578999999999999999999999999999999999999999999999976544 57788
Q ss_pred cccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEecc
Q psy7773 246 RAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVN 297 (1281)
Q Consensus 246 ~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~ 297 (1281)
.++++|+|++.+++||+||+|||+..+.||+||++|.|+.. .++.|++..
T Consensus 104 ~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g--~~~~~~~~~ 153 (185)
T 2jgn_A 104 AVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG--LATSFFNER 153 (185)
T ss_dssp C------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCE--EEEEEECGG
T ss_pred ChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCc--EEEEEEchh
Confidence 99999999999999999999999999999999999999754 455566654
No 81
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.65 E-value=2.9e-14 Score=179.33 Aligned_cols=127 Identities=17% Similarity=0.115 Sum_probs=111.5
Q ss_pred ccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEecc
Q psy7773 870 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 949 (1281)
Q Consensus 870 ~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~ 949 (1281)
..+++..|...|..+...+.+|||||.....++.|..+|...|+++..+||+++..+|..+++.|..+... +|++|.
T Consensus 421 ~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~---VLvaT~ 497 (664)
T 1c4o_A 421 TENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYD---CLVGIN 497 (664)
T ss_dssp STTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCS---EEEESC
T ss_pred ccchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCce---EEEccC
Confidence 34677777777777777889999999999999999999999999999999999999999999999986555 599999
Q ss_pred ccccccCcccCCEEEEeCC-----CCChhhhhhHhHhHHhhCCCCceEEEEEEeCCCH
Q psy7773 950 AGGLGLNLQAADTVIIFDS-----DWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSV 1002 (1281)
Q Consensus 950 agg~GlNL~~ad~VI~~D~-----~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~ti 1002 (1281)
++++|+|++.+++||++|. |+++..|+|++||++|.|. -.++.|+...+.
T Consensus 498 ~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~---G~~i~~~~~~~~ 552 (664)
T 1c4o_A 498 LLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR---GEVWLYADRVSE 552 (664)
T ss_dssp CCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT---CEEEEECSSCCH
T ss_pred hhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCC---CEEEEEEcCCCH
Confidence 9999999999999999998 8999999999999999863 346667766543
No 82
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.46 E-value=1.2e-17 Score=173.95 Aligned_cols=119 Identities=20% Similarity=0.312 Sum_probs=107.9
Q ss_pred cchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccc
Q psy7773 871 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 950 (1281)
Q Consensus 871 s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~a 950 (1281)
+.|+.+|..++.. ..+.++||||+....++.+...|...|+.+..++|+++..+|..+++.|+++... +|++|++
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~---vLvaT~~ 89 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN---VLVATDV 89 (170)
Confidence 5688888888876 3467899999999999999999999999999999999999999999999986544 5999999
Q ss_pred cccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEE
Q psy7773 951 GGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVL 994 (1281)
Q Consensus 951 gg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~ 994 (1281)
+++|||++.+++||+||+|||+..|.|++||++|.|++..+.++
T Consensus 90 ~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~ 133 (170)
T 2yjt_D 90 AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISL 133 (170)
Confidence 99999999999999999999999999999999999997765443
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.64 E-value=5.9e-16 Score=166.96 Aligned_cols=125 Identities=19% Similarity=0.295 Sum_probs=111.1
Q ss_pred cccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEec
Q psy7773 869 RTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLST 948 (1281)
Q Consensus 869 ~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT 948 (1281)
..+.|+..|..++... .+.++||||.....++.|...|...|+.+..+||+++..+|..+++.|+++... +|++|
T Consensus 14 ~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vlvaT 88 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR---VLVAT 88 (212)
T ss_dssp CTTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC---EEEEC
T ss_pred CHHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe---EEEec
Confidence 3578999999999753 467899999999999999999999999999999999999999999999986655 59999
Q ss_pred cccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCC
Q psy7773 949 RAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVN 1000 (1281)
Q Consensus 949 ~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~ 1000 (1281)
+++++|||++.+++||+||+||++..|.|++||++|.|+.. .+|.|++..
T Consensus 89 ~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~ 138 (212)
T 3eaq_A 89 DVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR 138 (212)
T ss_dssp TTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--B--EEEEEECGG
T ss_pred ChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCC--eEEEEEchh
Confidence 99999999999999999999999999999999999999764 556666654
No 84
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.63 E-value=1.3e-15 Score=157.69 Aligned_cols=125 Identities=20% Similarity=0.346 Sum_probs=107.0
Q ss_pred cHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecccc
Q psy7773 169 GKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAG 248 (1281)
Q Consensus 169 ~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~ 248 (1281)
.|+..|..++... .+.++||||++...++.+...|...|+.+..+||+++..+|..+++.|+++... +|++|.++
T Consensus 16 ~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~ 90 (165)
T 1fuk_A 16 YKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTDLL 90 (165)
T ss_dssp GHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEEGGG
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCE---EEEEcChh
Confidence 3999999999875 567999999999999999999999999999999999999999999999986544 47788999
Q ss_pred ccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchH
Q psy7773 249 GLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVE 300 (1281)
Q Consensus 249 ~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tie 300 (1281)
++|+|++.+++||+||+|||+..+.|++||++|.|+... ++.|++.+..+
T Consensus 91 ~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~--~~~~~~~~~~~ 140 (165)
T 1fuk_A 91 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV--AINFVTNEDVG 140 (165)
T ss_dssp TTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CE--EEEEEETTTHH
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCce--EEEEEcchHHH
Confidence 999999999999999999999999999999999997654 45666766543
No 85
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.63 E-value=8.7e-16 Score=162.54 Aligned_cols=124 Identities=20% Similarity=0.319 Sum_probs=106.6
Q ss_pred ccCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEec
Q psy7773 166 RTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLST 245 (1281)
Q Consensus 166 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st 245 (1281)
..+.|+..|.++|.. .+.++||||++...++.|...|...|+.+..++|+++..+|..+++.|+++... +|++|
T Consensus 38 ~~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~---vLvaT 111 (191)
T 2p6n_A 38 KEEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKD---VLVAT 111 (191)
T ss_dssp CGGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCS---EEEEC
T ss_pred ChHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCE---EEEEc
Confidence 346799999888865 456899999999999999999999999999999999999999999999976544 57888
Q ss_pred cccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEecc
Q psy7773 246 RAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVN 297 (1281)
Q Consensus 246 ~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~ 297 (1281)
.++++|+|++.+++||+||+|||+..+.||+||++|.|+...+ +.|++..
T Consensus 112 ~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~--i~l~~~~ 161 (191)
T 2p6n_A 112 DVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIA--TTFINKA 161 (191)
T ss_dssp HHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEE--EEEECTT
T ss_pred CchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEE--EEEEcCc
Confidence 9999999999999999999999999999999999999997644 4455544
No 86
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.62 E-value=2.5e-15 Score=163.46 Aligned_cols=159 Identities=15% Similarity=0.181 Sum_probs=112.8
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHC---CC
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWA---PS 620 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~---p~ 620 (1281)
.|+|||.+++..++. +.++|++.+||+|||++++..+...+.......++|||||. .+..||..++.++. |+
T Consensus 36 ~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (220)
T 1t6n_A 36 HPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 111 (220)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 599999999998874 56799999999999999887776655333334589999998 55599999999986 46
Q ss_pred CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCccccccc---hHHHHHHHhhhcc
Q psy7773 621 ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNHH---CKLTQTLNTFYNS 695 (1281)
Q Consensus 621 ~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~~---s~~~~~l~~~~~~ 695 (1281)
..+..+.|......... .......+|+|+|++.+.... ..+....+++|||||||++.... ..+...+..+...
T Consensus 112 ~~v~~~~g~~~~~~~~~-~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~ 190 (220)
T 1t6n_A 112 VKVAVFFGGLSIKKDEE-VLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE 190 (220)
T ss_dssp CCEEEESCCSCHHHHHH-HHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSS
T ss_pred ceEEEEeCCCChHHHHH-HHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCc
Confidence 78888888644332221 122345799999999986532 22333478999999999996421 2223333333235
Q ss_pred CcEEEeecCCCCC
Q psy7773 696 SHRVLLTGTPLQN 708 (1281)
Q Consensus 696 ~~rllLTgTPl~n 708 (1281)
.++++|||||-.+
T Consensus 191 ~~~i~~SAT~~~~ 203 (220)
T 1t6n_A 191 KQVMMFSATLSKE 203 (220)
T ss_dssp SEEEEEESCCCTT
T ss_pred CeEEEEEeecCHH
Confidence 6789999998543
No 87
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.61 E-value=3e-15 Score=160.97 Aligned_cols=157 Identities=17% Similarity=0.117 Sum_probs=112.7
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHh---cCCCCCEEEEeCC-ccHHHHHHHHHHHCC
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEK---KKNLGPYLVIVPL-STLSNWVLEFEKWAP 619 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~---~~~~~~~LIV~P~-s~l~~W~~E~~~~~p 619 (1281)
..|+|||.+++.+++. +.++|+..+||+|||++++..+...+.. .....++|||||. +++.||..++.++++
T Consensus 22 ~~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 97 (207)
T 2gxq_A 22 TTPTPIQAAALPLALE----GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP 97 (207)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHcC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhh
Confidence 4799999999998774 6789999999999999876665554322 1234579999998 666999999999998
Q ss_pred CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCcccccc--chHHHHHHHhhhcc
Q psy7773 620 SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNH--HCKLTQTLNTFYNS 695 (1281)
Q Consensus 620 ~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~--~s~~~~~l~~~~~~ 695 (1281)
...+..+.|........... ....+|+|+|++.+.... ..+....+++|||||||++... ...+...+..+...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~--~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~ 175 (207)
T 2gxq_A 98 HLKVVAVYGGTGYGKQKEAL--LRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPS 175 (207)
T ss_dssp TSCEEEECSSSCSHHHHHHH--HHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred cceEEEEECCCChHHHHHHh--hCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhccchHHHHHHHHHhCCcc
Confidence 88888887764332221111 135799999999886542 2233346899999999998643 33344444443235
Q ss_pred CcEEEeecCCC
Q psy7773 696 SHRVLLTGTPL 706 (1281)
Q Consensus 696 ~~rllLTgTPl 706 (1281)
.+.++|||||-
T Consensus 176 ~~~i~~SAT~~ 186 (207)
T 2gxq_A 176 RQTLLFSATLP 186 (207)
T ss_dssp SEEEEECSSCC
T ss_pred CeEEEEEEecC
Confidence 66799999983
No 88
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.59 E-value=5.7e-15 Score=154.34 Aligned_cols=124 Identities=23% Similarity=0.362 Sum_probs=106.0
Q ss_pred cHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecccc
Q psy7773 169 GKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAG 248 (1281)
Q Consensus 169 ~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~ 248 (1281)
.|+..|..++... .+.++||||++...++.|...|...|+.+..+||+++..+|..+++.|+++... +|++|.++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~---vLvaT~~~ 94 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEK---VLITTNVC 94 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCS---EEEECCSC
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCe---EEEEecch
Confidence 4899999988764 467999999999999999999999999999999999999999999999986544 57888999
Q ss_pred ccCCCCCCCCEEEEeCCC------CCcchhhHHhHhhhhcCCCCeEEEEEEEeccch
Q psy7773 249 GLGLNLQAADTVIIFDSD------WNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSV 299 (1281)
Q Consensus 249 ~~GlnL~~a~~vi~~d~~------wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Ti 299 (1281)
++|+|++.+++||+||+| |++..+.||+||++|.|+. -.++.|+..+..
T Consensus 95 ~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~~ 149 (175)
T 2rb4_A 95 ARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDEL 149 (175)
T ss_dssp CTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGGH
T ss_pred hcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccchH
Confidence 999999999999999999 6678899999999999964 566777777653
No 89
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.59 E-value=9.6e-15 Score=160.63 Aligned_cols=156 Identities=13% Similarity=0.144 Sum_probs=111.6
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhc----CCCCCEEEEeCC-ccHHHHHHHHHHHC
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKK----KNLGPYLVIVPL-STLSNWVLEFEKWA 618 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~----~~~~~~LIV~P~-s~l~~W~~E~~~~~ 618 (1281)
..|+|||.+++.+++ ++.++|++.+||+|||++++..+...+... ....++|||||. .+..||..++..++
T Consensus 46 ~~~~~~Q~~~i~~~~----~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 121 (236)
T 2pl3_A 46 RLVTEIQKQTIGLAL----QGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVG 121 (236)
T ss_dssp CBCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 479999999999887 467899999999999999776665544331 234579999998 55699999999998
Q ss_pred CC--CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhccc---ccccCceeEEEEeCCcccccc--chHHHHHHHh
Q psy7773 619 PS--ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKS---VLSKIQWKCMIIDEGHRMKNH--HCKLTQTLNT 691 (1281)
Q Consensus 619 p~--~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~---~l~~~~w~~vIvDEaHr~kn~--~s~~~~~l~~ 691 (1281)
+. ..+..+.|.......... ....+|+|+|++.+..... .+....+++|||||||++.+. ...+...+..
T Consensus 122 ~~~~~~~~~~~g~~~~~~~~~~---~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~ 198 (236)
T 2pl3_A 122 KNHDFSAGLIIGGKDLKHEAER---INNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIEN 198 (236)
T ss_dssp TTSSCCEEEECCC--CHHHHHH---HTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHT
T ss_pred CCCCeeEEEEECCCCHHHHHHh---CCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHh
Confidence 54 677777776543322211 2468999999999966432 233447899999999998753 3344445544
Q ss_pred hhccCcEEEeecCCC
Q psy7773 692 FYNSSHRVLLTGTPL 706 (1281)
Q Consensus 692 ~~~~~~rllLTgTPl 706 (1281)
+....++++||||+-
T Consensus 199 ~~~~~~~l~~SAT~~ 213 (236)
T 2pl3_A 199 LPKKRQTLLFSATQT 213 (236)
T ss_dssp SCTTSEEEEEESSCC
T ss_pred CCCCCeEEEEEeeCC
Confidence 423556899999973
No 90
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.58 E-value=5.7e-15 Score=160.45 Aligned_cols=162 Identities=15% Similarity=0.075 Sum_probs=113.3
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc-cHHHHHHHHHHHCC---
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS-TLSNWVLEFEKWAP--- 619 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s-~l~~W~~E~~~~~p--- 619 (1281)
..|+|||.+++..++. +.++|++.+||+|||++++..+...+........+|||||.. +..||..++.++..
T Consensus 25 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 100 (219)
T 1q0u_A 25 YKPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCP 100 (219)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcc
Confidence 4799999999998875 578999999999999987766655543333446899999984 55999999988864
Q ss_pred ---CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCccccccc--hHHHHHHHhh
Q psy7773 620 ---SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNHH--CKLTQTLNTF 692 (1281)
Q Consensus 620 ---~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~~--s~~~~~l~~~ 692 (1281)
...+..+.|........ .......+|+|+|++.+.... ..+....+++|||||||++.... ..+...+..+
T Consensus 101 ~~~~~~~~~~~g~~~~~~~~--~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~ 178 (219)
T 1q0u_A 101 KDRMIVARCLIGGTDKQKAL--EKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARM 178 (219)
T ss_dssp GGGCCCEEEECCCSHHHHTT--CCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTS
T ss_pred cccceEEEEEeCCCCHHHHH--HHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhC
Confidence 45677777765433221 112346899999999887532 22333468899999999987432 3344444443
Q ss_pred hccCcEEEeecCCCCCChhH
Q psy7773 693 YNSSHRVLLTGTPLQNKLPE 712 (1281)
Q Consensus 693 ~~~~~rllLTgTPl~n~~~e 712 (1281)
....++++||||+ .+.+.+
T Consensus 179 ~~~~~~l~~SAT~-~~~~~~ 197 (219)
T 1q0u_A 179 PKDLQMLVFSATI-PEKLKP 197 (219)
T ss_dssp CTTCEEEEEESCC-CGGGHH
T ss_pred CcccEEEEEecCC-CHHHHH
Confidence 2356789999997 334433
No 91
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.58 E-value=1.1e-14 Score=159.42 Aligned_cols=154 Identities=12% Similarity=0.097 Sum_probs=110.8
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHHHHHHHHC---CC
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL-STLSNWVLEFEKWA---PS 620 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~-s~l~~W~~E~~~~~---p~ 620 (1281)
.|+|||.+++..+.. +.++|+..+||+|||++++..+...+.......++|||||. .+..||..++.++. ++
T Consensus 46 ~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 121 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRC----GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEG 121 (230)
T ss_dssp SCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 699999999998763 67899999999999998665554443233445689999998 55699999999986 36
Q ss_pred CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCcccccc---chHHHHHHHhhhcc
Q psy7773 621 ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNH---HCKLTQTLNTFYNS 695 (1281)
Q Consensus 621 ~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~---~s~~~~~l~~~~~~ 695 (1281)
..+.++.|.......... ....+|+|+|++.+.... ..+....+++|||||||++... ...+...+..+...
T Consensus 122 ~~~~~~~g~~~~~~~~~~---~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~ 198 (230)
T 2oxc_A 122 LECHVFIGGTPLSQDKTR---LKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPAS 198 (230)
T ss_dssp CCEEEECTTSCHHHHHHH---TTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSS
T ss_pred ceEEEEeCCCCHHHHHHh---ccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCC
Confidence 788888876544332221 246899999999987642 2233347889999999999543 33444444444235
Q ss_pred CcEEEeecCC
Q psy7773 696 SHRVLLTGTP 705 (1281)
Q Consensus 696 ~~rllLTgTP 705 (1281)
.++++||||+
T Consensus 199 ~~~l~lSAT~ 208 (230)
T 2oxc_A 199 KQMLAVSATY 208 (230)
T ss_dssp CEEEEEESCC
T ss_pred CeEEEEEecc
Confidence 6689999996
No 92
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.58 E-value=1.7e-14 Score=155.54 Aligned_cols=136 Identities=20% Similarity=0.292 Sum_probs=114.7
Q ss_pred ccCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEec
Q psy7773 166 RTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLST 245 (1281)
Q Consensus 166 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st 245 (1281)
..+.|+.+|..++.. ..+.++||||+.....+.|...|...|+.+..+||+++..+|..+++.|+++..+ +|++|
T Consensus 14 ~~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~---vlvaT 88 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR---VLVAT 88 (212)
T ss_dssp CTTSHHHHHHHHHHH--HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC---EEEEC
T ss_pred CHHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe---EEEec
Confidence 347899999999974 3578999999999999999999999999999999999999999999999986543 47888
Q ss_pred cccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhc
Q psy7773 246 RAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYK 310 (1281)
Q Consensus 246 ~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K 310 (1281)
.++++|+|++.+++||+||+||++..+.||+||++|.|+.. .+|.|++.. |...+......
T Consensus 89 ~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~--~~~~~~~i~~~ 149 (212)
T 3eaq_A 89 DVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR--ERRDVEALERA 149 (212)
T ss_dssp TTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--B--EEEEEECGG--GHHHHHHHHHH
T ss_pred ChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCC--eEEEEEchh--HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999764 455666654 33444444433
No 93
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.58 E-value=3.3e-15 Score=161.72 Aligned_cols=133 Identities=19% Similarity=0.263 Sum_probs=92.4
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhc---CCCCCEEEEeCCccH-HH-HHHHHHHH
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKK---KNLGPYLVIVPLSTL-SN-WVLEFEKW 617 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~---~~~~~~LIV~P~s~l-~~-W~~E~~~~ 617 (1281)
..+|+|||.+++.+++. +.++|+..+||+|||++++.++..++... ...+++|||||...+ .| |..++..|
T Consensus 31 ~~~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CCCCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred CCCchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 45899999999998873 57899999999999999998887766432 235689999998554 77 99999998
Q ss_pred CC-CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccc--------cccCceeEEEEeCCcccccc
Q psy7773 618 AP-SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSV--------LSKIQWKCMIIDEGHRMKNH 681 (1281)
Q Consensus 618 ~p-~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~--------l~~~~w~~vIvDEaHr~kn~ 681 (1281)
.+ ...+..+.|........... ....+|+|+||+.+...... +....|++|||||||++...
T Consensus 107 ~~~~~~v~~~~g~~~~~~~~~~~--~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~ 177 (216)
T 3b6e_A 107 LKKWYRVIGLSGDTQLKISFPEV--VKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE 177 (216)
T ss_dssp HTTTSCEEECCC---CCCCHHHH--HHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC------
T ss_pred hccCceEEEEeCCcccchhHHhh--ccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccC
Confidence 75 46777777754321111000 12478999999999765332 33347899999999999643
No 94
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.57 E-value=1.6e-14 Score=155.31 Aligned_cols=157 Identities=17% Similarity=0.135 Sum_probs=111.9
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcc-HHHHHHHHHHHCC---
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLST-LSNWVLEFEKWAP--- 619 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~-l~~W~~E~~~~~p--- 619 (1281)
..|+|||.+++..++ ++.++|+..+||+|||++++..+...+.......++|||||... +.||...+..++.
T Consensus 24 ~~~~~~Q~~~i~~~~----~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 99 (206)
T 1vec_A 24 EKPSPIQEESIPIAL----SGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG 99 (206)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSS
T ss_pred CCCCHHHHHHHHHHc----cCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 379999999999877 36789999999999999877666554433334457999999855 5899999988864
Q ss_pred CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhccc--ccccCceeEEEEeCCccccccc--hHHHHHHHhhhcc
Q psy7773 620 SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKS--VLSKIQWKCMIIDEGHRMKNHH--CKLTQTLNTFYNS 695 (1281)
Q Consensus 620 ~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~--~l~~~~w~~vIvDEaHr~kn~~--s~~~~~l~~~~~~ 695 (1281)
+..+..+.|.......... .....+|+|+|++.+..... .+....+++|||||||++.... ..+...+..+.+.
T Consensus 100 ~~~~~~~~g~~~~~~~~~~--~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~ 177 (206)
T 1vec_A 100 GAKVMATTGGTNLRDDIMR--LDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKN 177 (206)
T ss_dssp SCCEEEECSSSCHHHHHHH--TTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTT
T ss_pred CceEEEEeCCccHHHHHHh--cCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCcc
Confidence 5677777776554433222 23568999999999865422 2233468999999999987533 2333444433235
Q ss_pred CcEEEeecCCC
Q psy7773 696 SHRVLLTGTPL 706 (1281)
Q Consensus 696 ~~rllLTgTPl 706 (1281)
.++++||||+-
T Consensus 178 ~~~l~~SAT~~ 188 (206)
T 1vec_A 178 RQILLYSATFP 188 (206)
T ss_dssp CEEEEEESCCC
T ss_pred ceEEEEEeeCC
Confidence 67899999983
No 95
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.57 E-value=1.3e-14 Score=160.72 Aligned_cols=157 Identities=17% Similarity=0.135 Sum_probs=113.3
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcc-HHHHHHHHHHHCC--C
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLST-LSNWVLEFEKWAP--S 620 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~-l~~W~~E~~~~~p--~ 620 (1281)
..|+|||.+++..++ ++.++|+..+||+|||++++..+...+........+|||||... ..||..++.+++. +
T Consensus 64 ~~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~ 139 (249)
T 3ber_A 64 TKPTKIQIEAIPLAL----QGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIG 139 (249)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 479999999999877 46789999999999999977666665545544567999999855 5899999998864 5
Q ss_pred CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhccc---ccccCceeEEEEeCCcccccc--chHHHHHHHhhhcc
Q psy7773 621 ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKS---VLSKIQWKCMIIDEGHRMKNH--HCKLTQTLNTFYNS 695 (1281)
Q Consensus 621 ~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~---~l~~~~w~~vIvDEaHr~kn~--~s~~~~~l~~~~~~ 695 (1281)
..+..+.|.......... .....+|+|+|++.+..... .+....+++|||||||++.+. ...+...+..+...
T Consensus 140 ~~~~~~~g~~~~~~~~~~--~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~ 217 (249)
T 3ber_A 140 VQSAVIVGGIDSMSQSLA--LAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRD 217 (249)
T ss_dssp CCEEEECTTSCHHHHHHH--HHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSS
T ss_pred eeEEEEECCCChHHHHHH--hcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCC
Confidence 677777775433322111 13568999999999876432 233346899999999998753 33344444443235
Q ss_pred CcEEEeecCCC
Q psy7773 696 SHRVLLTGTPL 706 (1281)
Q Consensus 696 ~~rllLTgTPl 706 (1281)
.++++||||+-
T Consensus 218 ~~~l~~SAT~~ 228 (249)
T 3ber_A 218 RKTFLFSATMT 228 (249)
T ss_dssp SEEEEEESSCC
T ss_pred CeEEEEeccCC
Confidence 67899999974
No 96
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.57 E-value=1.4e-14 Score=157.95 Aligned_cols=156 Identities=14% Similarity=0.085 Sum_probs=106.4
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc-cHHHHHHHHHHHCC--C
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS-TLSNWVLEFEKWAP--S 620 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s-~l~~W~~E~~~~~p--~ 620 (1281)
..|+|||.+++..++. +.++|++.+||+|||++++..+...+.......++|||||.. +..||..++.++++ +
T Consensus 35 ~~~~~~Q~~~i~~~~~----~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 110 (224)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCcHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccC
Confidence 4799999999998763 678999999999999986554444333334456899999985 55999999999875 4
Q ss_pred CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCcccccc--chHHHHHHHhhhccC
Q psy7773 621 ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNH--HCKLTQTLNTFYNSS 696 (1281)
Q Consensus 621 ~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~--~s~~~~~l~~~~~~~ 696 (1281)
..+..+.|......... .....+|+|+|++.+.... ..+....+++|||||||++... ...+...+..+....
T Consensus 111 ~~~~~~~g~~~~~~~~~---~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~ 187 (224)
T 1qde_A 111 IKVHACIGGTSFVEDAE---GLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT 187 (224)
T ss_dssp CCEEEECC-------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred ceEEEEeCCcchHHHHh---cCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccC
Confidence 66777777644332221 1234899999999986532 2223346899999999998643 233444444432455
Q ss_pred cEEEeecCCC
Q psy7773 697 HRVLLTGTPL 706 (1281)
Q Consensus 697 ~rllLTgTPl 706 (1281)
++++||||+-
T Consensus 188 ~~i~lSAT~~ 197 (224)
T 1qde_A 188 QVVLLSATMP 197 (224)
T ss_dssp EEEEEESSCC
T ss_pred eEEEEEeecC
Confidence 6899999984
No 97
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.57 E-value=6.4e-15 Score=166.47 Aligned_cols=126 Identities=18% Similarity=0.290 Sum_probs=109.4
Q ss_pred cccchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEec
Q psy7773 869 RTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLST 948 (1281)
Q Consensus 869 ~~s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT 948 (1281)
..+.|+.+|..++.... +.++||||.....++.|...|...|+.+..+||+++..+|..+++.|+.+... +|++|
T Consensus 11 ~~~~K~~~L~~ll~~~~--~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~---vLVaT 85 (300)
T 3i32_A 11 PVRGRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR---VLVAT 85 (300)
T ss_dssp CSSSHHHHHHHHHHHHC--CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC---EEEEC
T ss_pred CHHHHHHHHHHHHHhcC--CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce---EEEEe
Confidence 34679999999997754 77899999999999999999999999999999999999999999999986655 59999
Q ss_pred cccccccCcccCCEEEEeCCCCChhhhhhHhHhHHhhCCCCceEEEEEEeCCC
Q psy7773 949 RAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNS 1001 (1281)
Q Consensus 949 ~agg~GlNL~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~V~rli~~~t 1001 (1281)
+++++|||++.+++||+||+|||+..|.|++||++|.|+.. .+|.|++...
T Consensus 86 ~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G--~~i~l~~~~e 136 (300)
T 3i32_A 86 DVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPRE 136 (300)
T ss_dssp STTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----C--EEEEEECSST
T ss_pred chhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCc--eEEEEeChHH
Confidence 99999999999999999999999999999999999999874 5666776653
No 98
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.56 E-value=3.1e-15 Score=186.51 Aligned_cols=137 Identities=18% Similarity=0.246 Sum_probs=79.1
Q ss_pred cCcHHHHHHHHHHHhh--hCCCeEEEEeccHHHHHHHHHHHHhC------------CCcEEEecCCCCHHHHHHHHHHhc
Q psy7773 167 TSGKFELLDRILPKFK--ETKHRVLMFCQMTQLMTILEDYFIWR------------DFSYLRLDGTTKSEDRGELLRKFN 232 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~--~~~~kvlIFs~~~~~~~~l~~~l~~~------------g~~~~~~~g~~~~~~R~~~i~~F~ 232 (1281)
.++|+..|.++|.... ..+.|+||||+++.+++.|...|... |..+..+||+++..+|..+++.|+
T Consensus 370 ~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 449 (556)
T 4a2p_A 370 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 449 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC--------------------------
T ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhc
Confidence 4899999999998765 56789999999999999999999876 566667778899999999999999
Q ss_pred C-CCCCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhcc
Q psy7773 233 E-PESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKL 311 (1281)
Q Consensus 233 ~-~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~ 311 (1281)
+ +.. . +|++|.++++|||++.+++||+||+||||..+.||+|| + +.+++.+|.|++.+++++. +.....|.
T Consensus 450 ~~g~~--~-vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-g---R~~~g~~~~l~~~~~~~~~-~~~~~~k~ 521 (556)
T 4a2p_A 450 TSKDN--R-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-G---RAAGSKCILVTSKTEVVEN-EKCNRYKE 521 (556)
T ss_dssp ----C--C-EEEEEC-----------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHHHHH
T ss_pred ccCce--E-EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-C---CCCCceEEEEEeCcchHHH-HHhhHHHH
Confidence 7 443 3 57888999999999999999999999999999999999 4 4567899999999999988 44444443
No 99
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.32 E-value=3.3e-16 Score=162.89 Aligned_cols=117 Identities=20% Similarity=0.309 Sum_probs=105.9
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
+.|+.+|..++.. ..+.++||||++...++.|...|...|+.+..+||+++..+|..+++.|+++... +|++|.+
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~---vLvaT~~ 89 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN---VLVATDV 89 (170)
Confidence 5688888888875 3567999999999999999999999999999999999999999999999976543 5788899
Q ss_pred cccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEE
Q psy7773 248 GGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVR 289 (1281)
Q Consensus 248 ~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~ 289 (1281)
+++|+|++.+++||+||+|||+..+.|++||++|.|+...|.
T Consensus 90 ~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~ 131 (170)
T 2yjt_D 90 AARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAI 131 (170)
Confidence 999999999999999999999999999999999999866553
No 100
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.54 E-value=2.7e-14 Score=157.16 Aligned_cols=158 Identities=17% Similarity=0.141 Sum_probs=107.5
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc-cHHHHHHHHHHHCC--C
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS-TLSNWVLEFEKWAP--S 620 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s-~l~~W~~E~~~~~p--~ 620 (1281)
..|+|||.+++..++. +.++|+..+||+|||++++..+...+.......++|||||.. +..||..++.+++. +
T Consensus 51 ~~~~~~Q~~ai~~i~~----~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (237)
T 3bor_A 51 EKPSAIQQRAIIPCIK----GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMG 126 (237)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcC
Confidence 3699999999998773 678999999999999987666655443333456899999985 55999999999875 4
Q ss_pred CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCccccc--cchHHHHHHHhhhccC
Q psy7773 621 ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKN--HHCKLTQTLNTFYNSS 696 (1281)
Q Consensus 621 ~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn--~~s~~~~~l~~~~~~~ 696 (1281)
..+..+.|........ .......++|+|+|++.+.... ..+....+++|||||||++.. ....+...+..+....
T Consensus 127 ~~~~~~~g~~~~~~~~-~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~ 205 (237)
T 3bor_A 127 ATCHACIGGTNVRNEM-QKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSI 205 (237)
T ss_dssp CCEEEECC--------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTC
T ss_pred ceEEEEECCCchHHHH-HHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCC
Confidence 5566666654333221 1222345899999999876532 223334689999999999853 3444555555543456
Q ss_pred cEEEeecCCC
Q psy7773 697 HRVLLTGTPL 706 (1281)
Q Consensus 697 ~rllLTgTPl 706 (1281)
+.++||||+-
T Consensus 206 ~~i~~SAT~~ 215 (237)
T 3bor_A 206 QVVLLSATMP 215 (237)
T ss_dssp EEEEECSSCC
T ss_pred eEEEEEEecC
Confidence 7799999984
No 101
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.53 E-value=9.9e-15 Score=189.09 Aligned_cols=139 Identities=19% Similarity=0.276 Sum_probs=84.9
Q ss_pred cCcHHHHHHHHHHHhh--hCCCeEEEEeccHHHHHHHHHHHHhC------------CCcEEEecCCCCHHHHHHHHHHhc
Q psy7773 167 TSGKFELLDRILPKFK--ETKHRVLMFCQMTQLMTILEDYFIWR------------DFSYLRLDGTTKSEDRGELLRKFN 232 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~--~~~~kvlIFs~~~~~~~~l~~~l~~~------------g~~~~~~~g~~~~~~R~~~i~~F~ 232 (1281)
.++|+..|..+|.... ..+.|+||||+++.+++.|...|... |..+..+||+++..+|..+++.|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~ 690 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-------------------------
T ss_pred CChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhh
Confidence 5899999999998754 56799999999999999999999773 667777889999999999999999
Q ss_pred C-CCCCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhcc
Q psy7773 233 E-PESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKL 311 (1281)
Q Consensus 233 ~-~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~ 311 (1281)
+ +... +|++|.++|+|||++.|++||+||+||||..+.||+|| +| .+++.+|.|++.+++++. +.....|.
T Consensus 691 ~~g~~~---vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR---~~~g~~i~l~~~~~~ee~-~~~~~~ke 762 (797)
T 4a2q_A 691 TSKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVEN-EKCNRYKE 762 (797)
T ss_dssp ---CCS---EEEEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHHHHH
T ss_pred ccCCce---EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCceEEEEEeCCcHHHH-HHHHHHHH
Confidence 8 5443 57889999999999999999999999999999999999 55 477899999999999988 54554444
Q ss_pred cc
Q psy7773 312 NM 313 (1281)
Q Consensus 312 ~l 313 (1281)
.+
T Consensus 763 ~~ 764 (797)
T 4a2q_A 763 EM 764 (797)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 102
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.52 E-value=2e-14 Score=188.16 Aligned_cols=131 Identities=17% Similarity=0.255 Sum_probs=82.8
Q ss_pred cCcHHHHHHHHHHHhh--hCCCeEEEEeccHHHHHHHHHHHHhC------------CCcEEEecCCCCHHHHHHHHHHhc
Q psy7773 167 TSGKFELLDRILPKFK--ETKHRVLMFCQMTQLMTILEDYFIWR------------DFSYLRLDGTTKSEDRGELLRKFN 232 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~--~~~~kvlIFs~~~~~~~~l~~~l~~~------------g~~~~~~~g~~~~~~R~~~i~~F~ 232 (1281)
.++|+..|.++|.... ..+.++||||+++.+++.|..+|... |..+..+||+++..+|..+++.|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr 690 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhh
Confidence 4899999999998864 46799999999999999999999976 666677788899999999999999
Q ss_pred C-CCCCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHH
Q psy7773 233 E-PESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERIL 304 (1281)
Q Consensus 233 ~-~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~ 304 (1281)
+ +... +|++|.++|+|||++.|++||+||+||||..+.||+|| |+.+++.+|.|++.+|+++..+
T Consensus 691 ~~g~~~---VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----GR~~~g~vi~Li~~~t~ee~~~ 756 (936)
T 4a2w_A 691 TSKDNR---LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----GRAAGSKCILVTSKTEVVENEK 756 (936)
T ss_dssp ---CCS---EEEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH
T ss_pred ccCCee---EEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC----CCCCCCEEEEEEeCCCHHHHHH
Confidence 7 5443 58899999999999999999999999999999999999 4556788999999999998755
No 103
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.52 E-value=1.4e-14 Score=180.33 Aligned_cols=129 Identities=16% Similarity=0.254 Sum_probs=93.1
Q ss_pred cCcHHHHHHHHHHHhhh--CCCeEEEEeccHHHHHHHHHHHHhCC------------CcEEEecCCCCHHHHHHHHHHhc
Q psy7773 167 TSGKFELLDRILPKFKE--TKHRVLMFCQMTQLMTILEDYFIWRD------------FSYLRLDGTTKSEDRGELLRKFN 232 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~~--~~~kvlIFs~~~~~~~~l~~~l~~~g------------~~~~~~~g~~~~~~R~~~i~~F~ 232 (1281)
.++|+..|..+|..+.. .+.|+||||+++.+++.|...|...| ..+..+||+++..+|..+++.|+
T Consensus 369 ~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 448 (555)
T 3tbk_A 369 ENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFR 448 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHh
Confidence 47899999999988753 45899999999999999999998774 34555666999999999999999
Q ss_pred C-CCCCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHH
Q psy7773 233 E-PESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEER 302 (1281)
Q Consensus 233 ~-~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~ 302 (1281)
+ +... | |++|+++++|||++.+++||+||+||||..+.||+|| |+.+.+.+|.|++.++.++.
T Consensus 449 ~~g~~~--v-LvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~ 512 (555)
T 3tbk_A 449 ASGDNN--I-LIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTSSADVIEK 512 (555)
T ss_dssp ---CCS--E-EEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEESCHHHHHH
T ss_pred cCCCee--E-EEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEcCCCHHHH
Confidence 7 5443 4 7799999999999999999999999999999999999 66688999999999999887
No 104
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.51 E-value=3e-13 Score=152.71 Aligned_cols=124 Identities=19% Similarity=0.290 Sum_probs=107.1
Q ss_pred cCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecc
Q psy7773 167 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 246 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~ 246 (1281)
.+.|+.+|..++... .+.++||||......+.|...|...|+.+..+||++++.+|..++..|+++..+ +|++|.
T Consensus 12 ~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~---vLVaT~ 86 (300)
T 3i32_A 12 VRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR---VLVATD 86 (300)
T ss_dssp SSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC---EEEECS
T ss_pred HHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce---EEEEec
Confidence 467999999999764 378999999999999999999999999999999999999999999999976544 578889
Q ss_pred ccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEecc
Q psy7773 247 AGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVN 297 (1281)
Q Consensus 247 ~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~ 297 (1281)
++++|+|++.+++||+||+||++..+.|++||++|.|+. -.+|.|++..
T Consensus 87 va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~--G~~i~l~~~~ 135 (300)
T 3i32_A 87 VAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRG--GRVVLLYGPR 135 (300)
T ss_dssp TTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-------CEEEEEECSS
T ss_pred hhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCC--ceEEEEeChH
Confidence 999999999999999999999999999999999999986 4555666654
No 105
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.51 E-value=1.2e-13 Score=153.68 Aligned_cols=157 Identities=12% Similarity=0.145 Sum_probs=109.2
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC---------CCCCEEEEeCC-ccHHHHHHH
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKK---------NLGPYLVIVPL-STLSNWVLE 613 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~---------~~~~~LIV~P~-s~l~~W~~E 613 (1281)
..|+|||.+++..++. +.++|++.+||+|||++++..+...+.... ...++|||||. .+..||..+
T Consensus 44 ~~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 119 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSE 119 (253)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHH
Confidence 4799999999998774 678999999999999997766665543322 22479999998 555999999
Q ss_pred HHHHCCC--CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhccc--ccccCceeEEEEeCCcccccc--chHHHH
Q psy7773 614 FEKWAPS--ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKS--VLSKIQWKCMIIDEGHRMKNH--HCKLTQ 687 (1281)
Q Consensus 614 ~~~~~p~--~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~--~l~~~~w~~vIvDEaHr~kn~--~s~~~~ 687 (1281)
+.+++.. ..+..+.|.......... .....+|+|+|++.+..... .+....+++|||||||++... ...+..
T Consensus 120 ~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~ 197 (253)
T 1wrb_A 120 SQKFSLNTPLRSCVVYGGADTHSQIRE--VQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRK 197 (253)
T ss_dssp HHHHHTTSSCCEEEECSSSCSHHHHHH--HSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHH
T ss_pred HHHHhccCCceEEEEECCCCHHHHHHH--hCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHH
Confidence 9998753 566666665433222211 13568999999999976422 223346789999999998643 334444
Q ss_pred HHHhh-hc---cCcEEEeecCCC
Q psy7773 688 TLNTF-YN---SSHRVLLTGTPL 706 (1281)
Q Consensus 688 ~l~~~-~~---~~~rllLTgTPl 706 (1281)
.+..+ .. ..++++|||||-
T Consensus 198 i~~~~~~~~~~~~q~l~~SAT~~ 220 (253)
T 1wrb_A 198 IIEESNMPSGINRQTLMFSATFP 220 (253)
T ss_dssp HHHSSCCCCGGGCEEEEEESSCC
T ss_pred HHhhccCCCCCCcEEEEEEEeCC
Confidence 44422 11 346899999973
No 106
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.48 E-value=2.5e-13 Score=148.38 Aligned_cols=156 Identities=15% Similarity=0.179 Sum_probs=106.9
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHh------cCCCCCEEEEeCCccH-HHHHHHHHH
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEK------KKNLGPYLVIVPLSTL-SNWVLEFEK 616 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~------~~~~~~~LIV~P~s~l-~~W~~E~~~ 616 (1281)
.+|+|||.+++..++ ++.++|+..+||+|||++++..+...+.. ......+|||||...+ .||..++.+
T Consensus 41 ~~~~~~Q~~~i~~~~----~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 116 (228)
T 3iuy_A 41 LKPTPIQSQAWPIIL----QGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSK 116 (228)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHH
Confidence 479999999998876 46789999999999999877655443321 1244579999998655 999999999
Q ss_pred HC-CCCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc--cccccCceeEEEEeCCcccccc--chHHHHHHHh
Q psy7773 617 WA-PSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK--SVLSKIQWKCMIIDEGHRMKNH--HCKLTQTLNT 691 (1281)
Q Consensus 617 ~~-p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~--~~l~~~~w~~vIvDEaHr~kn~--~s~~~~~l~~ 691 (1281)
+. ++..+..+.|.......... ....++|+|+|++.+.... ..+...++++|||||||++... ...+...+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~ 194 (228)
T 3iuy_A 117 YSYKGLKSICIYGGRNRNGQIED--ISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLD 194 (228)
T ss_dssp HCCTTCCEEEECC------CHHH--HHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHH
T ss_pred hcccCceEEEEECCCChHHHHHH--hcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHh
Confidence 85 46677777665443322111 1245899999999987632 2223346899999999998753 3344455554
Q ss_pred hhccCcEEEeecCC
Q psy7773 692 FYNSSHRVLLTGTP 705 (1281)
Q Consensus 692 ~~~~~~rllLTgTP 705 (1281)
+....+.++||||+
T Consensus 195 ~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 195 VRPDRQTVMTSATW 208 (228)
T ss_dssp SCSSCEEEEEESCC
T ss_pred CCcCCeEEEEEeeC
Confidence 43456778999995
No 107
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.45 E-value=4.5e-13 Score=149.54 Aligned_cols=157 Identities=17% Similarity=0.207 Sum_probs=109.0
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhc----CCCCCEEEEeCCcc-HHHHHHHHHHHC
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKK----KNLGPYLVIVPLST-LSNWVLEFEKWA 618 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~----~~~~~~LIV~P~s~-l~~W~~E~~~~~ 618 (1281)
..|+|+|.+++..++. +.++|+..+||+|||++++..+...+... .....+|||||... ..||..++.+++
T Consensus 75 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 150 (262)
T 3ly5_A 75 TNMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELM 150 (262)
T ss_dssp CBCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 4699999999988775 56789999999999999776665554331 13457999999855 589999999987
Q ss_pred CC--CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccc---cccCceeEEEEeCCcccccc--chHHHHHHHh
Q psy7773 619 PS--ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSV---LSKIQWKCMIIDEGHRMKNH--HCKLTQTLNT 691 (1281)
Q Consensus 619 p~--~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~---l~~~~w~~vIvDEaHr~kn~--~s~~~~~l~~ 691 (1281)
.. ..+..+.|.......... . ....+|+|+|++.+...... +.-.++.+|||||||++... ...+...+..
T Consensus 151 ~~~~~~~~~~~g~~~~~~~~~~-~-~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~ 228 (262)
T 3ly5_A 151 THHVHTYGLIMGGSNRSAEAQK-L-GNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKL 228 (262)
T ss_dssp TTCCSCEEEECSSSCHHHHHHH-H-HHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHH
T ss_pred hhcCceEEEEECCCCHHHHHHH-h-cCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHh
Confidence 53 455566665433322211 1 13489999999998654322 23336799999999998653 3344444544
Q ss_pred hhccCcEEEeecCCC
Q psy7773 692 FYNSSHRVLLTGTPL 706 (1281)
Q Consensus 692 ~~~~~~rllLTgTPl 706 (1281)
+....+.++||||+-
T Consensus 229 ~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 229 LPTRRQTMLFSATQT 243 (262)
T ss_dssp SCSSSEEEEECSSCC
T ss_pred CCCCCeEEEEEecCC
Confidence 434566899999974
No 108
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.44 E-value=9.9e-13 Score=145.36 Aligned_cols=157 Identities=16% Similarity=0.171 Sum_probs=106.0
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhc-CCCCCEEEEeCCcc-HHHHHHHHHHHCCC-
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKK-KNLGPYLVIVPLST-LSNWVLEFEKWAPS- 620 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~-~~~~~~LIV~P~s~-l~~W~~E~~~~~p~- 620 (1281)
..|+|||.+++..++. +.++|+..+||+|||++++..+...+... .....+|||||... ..||..++.+++..
T Consensus 50 ~~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 125 (245)
T 3dkp_A 50 QMPTPIQMQAIPVMLH----GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGT 125 (245)
T ss_dssp CSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 3699999999988763 67789999999999999766655544322 23347999999855 59999999999764
Q ss_pred -CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhccc----ccccCceeEEEEeCCcccccc-----chHHHHHHH
Q psy7773 621 -ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKS----VLSKIQWKCMIIDEGHRMKNH-----HCKLTQTLN 690 (1281)
Q Consensus 621 -~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~----~l~~~~w~~vIvDEaHr~kn~-----~s~~~~~l~ 690 (1281)
..+..+.|....... ........++|+|+|++.+..... .+...++.+|||||||++... ...+...+.
T Consensus 126 ~~~~~~~~~~~~~~~~-~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~ 204 (245)
T 3dkp_A 126 GFRIHMIHKAAVAAKK-FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFL 204 (245)
T ss_dssp CCCEECCCHHHHHHTT-TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHH
T ss_pred CceEEEEecCccHHHH-hhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHH
Confidence 444444443222111 112234678999999999865422 233346899999999998642 223333333
Q ss_pred hhh-ccCcEEEeecCC
Q psy7773 691 TFY-NSSHRVLLTGTP 705 (1281)
Q Consensus 691 ~~~-~~~~rllLTgTP 705 (1281)
.+. ...+.++||||+
T Consensus 205 ~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 205 ACTSHKVRRAMFSATF 220 (245)
T ss_dssp HCCCTTCEEEEEESSC
T ss_pred hcCCCCcEEEEEeccC
Confidence 321 245679999998
No 109
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.42 E-value=1.1e-12 Score=144.70 Aligned_cols=156 Identities=13% Similarity=0.137 Sum_probs=107.9
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhc-----CCCCCEEEEeCCccH-HHHHHHHHHH
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKK-----KNLGPYLVIVPLSTL-SNWVLEFEKW 617 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~-----~~~~~~LIV~P~s~l-~~W~~E~~~~ 617 (1281)
..|+|||.+++..++. +.++|+..+||+|||++++..+...+... .....+|||||...+ .||...+.++
T Consensus 50 ~~~~~~Q~~~i~~~~~----g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~ 125 (242)
T 3fe2_A 50 TEPTAIQAQGWPVALS----GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEY 125 (242)
T ss_dssp CSCCHHHHHHHHHHHH----TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhC----CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHH
Confidence 3699999999988774 67899999999999999776665554332 234579999998655 8898888877
Q ss_pred CC--CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhccc--ccccCceeEEEEeCCcccccc--chHHHHHHHh
Q psy7773 618 AP--SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKS--VLSKIQWKCMIIDEGHRMKNH--HCKLTQTLNT 691 (1281)
Q Consensus 618 ~p--~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~--~l~~~~w~~vIvDEaHr~kn~--~s~~~~~l~~ 691 (1281)
+. +..+..+.|........... ....+|+|+|++.+..... .+...++++|||||||++... ...+...+..
T Consensus 126 ~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~ 203 (242)
T 3fe2_A 126 CRACRLKSTCIYGGAPKGPQIRDL--ERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQ 203 (242)
T ss_dssp HHHTTCCEEEECTTSCHHHHHHHH--HHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTT
T ss_pred HhhcCceEEEEECCCChHHHHHHh--cCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHh
Confidence 53 56677666654333222211 2357999999999865422 223346789999999998653 3333444444
Q ss_pred hhccCcEEEeecCC
Q psy7773 692 FYNSSHRVLLTGTP 705 (1281)
Q Consensus 692 ~~~~~~rllLTgTP 705 (1281)
+....+.++||||+
T Consensus 204 ~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 204 IRPDRQTLMWSATW 217 (242)
T ss_dssp SCSSCEEEEEESCC
T ss_pred CCccceEEEEEeec
Confidence 33456678999996
No 110
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.41 E-value=1.1e-12 Score=155.66 Aligned_cols=139 Identities=17% Similarity=0.289 Sum_probs=117.2
Q ss_pred cCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecc
Q psy7773 167 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 246 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~ 246 (1281)
...|...|..++... .+.++||||++...+..+...|...|+.+..+||+++..+|..+++.|+++... +|++|.
T Consensus 234 ~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~---vlv~T~ 308 (391)
T 1xti_A 234 DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVATN 308 (391)
T ss_dssp GGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCS---EEEESC
T ss_pred chhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCc---EEEECC
Confidence 457888888888764 668999999999999999999999999999999999999999999999986554 578899
Q ss_pred ccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhcccc
Q psy7773 247 AGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNM 313 (1281)
Q Consensus 247 ~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~~l 313 (1281)
++++|+|++.+++||+|++|||+..+.|++||++|.|+...+. .|+... -+..++.....+...
T Consensus 309 ~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~--~~~~~~-~~~~~~~~~~~~~~~ 372 (391)
T 1xti_A 309 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAI--TFVSDE-NDAKILNDVQDRFEV 372 (391)
T ss_dssp CCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEE--EEECSH-HHHHHHHHHHHHTTC
T ss_pred hhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEE--EEEccc-chHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999865544 444433 345555555555444
No 111
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.38 E-value=3.4e-13 Score=172.86 Aligned_cols=130 Identities=18% Similarity=0.188 Sum_probs=103.0
Q ss_pred cCcHHHHHHHHHHHhhh--C-CCeEEEEeccHHHHHHHHHHHHhC------CCcEEEecCC--------CCHHHHHHHHH
Q psy7773 167 TSGKFELLDRILPKFKE--T-KHRVLMFCQMTQLMTILEDYFIWR------DFSYLRLDGT--------TKSEDRGELLR 229 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~~--~-~~kvlIFs~~~~~~~~l~~~l~~~------g~~~~~~~g~--------~~~~~R~~~i~ 229 (1281)
.++|+..|..+|..... . +.++||||+++.+++.|...|... |+.+..+||+ ++..+|..+++
T Consensus 379 ~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~ 458 (699)
T 4gl2_A 379 ENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVIS 458 (699)
T ss_dssp ---CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHH
Confidence 35777778888776443 2 789999999999999999999987 9999999999 99999999999
Q ss_pred HhcCCCCCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHH
Q psy7773 230 KFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERI 303 (1281)
Q Consensus 230 ~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i 303 (1281)
.|+++... +|++|.++++|||++.+++||+||+||||..+.||+||++|.| ..++.+...++.+...
T Consensus 459 ~F~~g~~~---VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~~~~~~~~~ 525 (699)
T 4gl2_A 459 KFRTGKIN---LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAHSGSGVIER 525 (699)
T ss_dssp HHCC---C---CSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEESSSCSHHH
T ss_pred HHhcCCCc---EEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEeCCchHHHH
Confidence 99986544 5789999999999999999999999999999999999976555 3444455666655443
No 112
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.37 E-value=2.4e-12 Score=151.07 Aligned_cols=125 Identities=21% Similarity=0.357 Sum_probs=109.1
Q ss_pred cCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecc
Q psy7773 167 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 246 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~ 246 (1281)
...|+..|..++. ..+.++||||++...+..+...|...|+.+..+||+++..+|..+++.|+++... +|++|.
T Consensus 223 ~~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~---vlv~T~ 296 (367)
T 1hv8_A 223 ENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR---ILIATD 296 (367)
T ss_dssp GGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSS---EEEECT
T ss_pred hHHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCe---EEEECC
Confidence 3567777777765 5678999999999999999999999999999999999999999999999986544 578889
Q ss_pred ccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccch
Q psy7773 247 AGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSV 299 (1281)
Q Consensus 247 ~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Ti 299 (1281)
++++|+|++.+++||++++|||+..+.|++||++|.|+...+ +.++.....
T Consensus 297 ~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~--~~~~~~~~~ 347 (367)
T 1hv8_A 297 VMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKA--ISIINRREY 347 (367)
T ss_dssp THHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEE--EEEECTTSH
T ss_pred hhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEE--EEEEcHHHH
Confidence 999999999999999999999999999999999999987654 444555543
No 113
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.35 E-value=2.1e-12 Score=154.27 Aligned_cols=124 Identities=19% Similarity=0.369 Sum_probs=109.4
Q ss_pred cHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecccc
Q psy7773 169 GKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAG 248 (1281)
Q Consensus 169 ~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~ 248 (1281)
.|+..|..++... ...++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++... +|++|.++
T Consensus 262 ~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---vlv~T~~~ 336 (410)
T 2j0s_A 262 WKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR---VLISTDVW 336 (410)
T ss_dssp HHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSC---EEEECGGG
T ss_pred hHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCC---EEEECChh
Confidence 3888888888764 346999999999999999999999999999999999999999999999986544 57899999
Q ss_pred ccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccch
Q psy7773 249 GLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSV 299 (1281)
Q Consensus 249 ~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Ti 299 (1281)
++|+|++.+++||+||+||++..+.||+||++|.|+.. .++.|+.....
T Consensus 337 ~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~~~ 385 (410)
T 2j0s_A 337 ARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKG--VAINFVKNDDI 385 (410)
T ss_dssp SSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCE--EEEEEEEGGGH
T ss_pred hCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCce--EEEEEecHHHH
Confidence 99999999999999999999999999999999999854 45566666543
No 114
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.35 E-value=2.5e-12 Score=153.06 Aligned_cols=137 Identities=20% Similarity=0.322 Sum_probs=115.4
Q ss_pred cCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecc
Q psy7773 167 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 246 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~ 246 (1281)
...|+..+..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++... +|++|.
T Consensus 242 ~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vLv~T~ 316 (400)
T 1s2m_A 242 ERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVR---TLVCSD 316 (400)
T ss_dssp GGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSS---EEEESS
T ss_pred hhhHHHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCc---EEEEcC
Confidence 467888888888754 567999999999999999999999999999999999999999999999986544 578889
Q ss_pred ccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhccc
Q psy7773 247 AGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLN 312 (1281)
Q Consensus 247 ~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~~ 312 (1281)
++++|+|++.+++||+||+|||+..+.||+||++|.|+.. .++.|+..+. ...+.....+.+
T Consensus 317 ~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~l~~~~~--~~~~~~i~~~~~ 378 (400)
T 1s2m_A 317 LLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG--LAINLINWND--RFNLYKIEQELG 378 (400)
T ss_dssp CSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCE--EEEEEECGGG--HHHHHHHHHHHT
T ss_pred ccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCc--eEEEEeccch--HHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999754 4566666653 333444444433
No 115
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.34 E-value=4.2e-12 Score=152.70 Aligned_cols=122 Identities=19% Similarity=0.307 Sum_probs=106.9
Q ss_pred cCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecc
Q psy7773 167 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 246 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~ 246 (1281)
...|...|.++|... +.++||||+....++.|...|...|+++..+||+++..+|..+++.|+++... +|++|.
T Consensus 285 ~~~k~~~l~~~l~~~---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~---vLvaT~ 358 (434)
T 2db3_A 285 KYAKRSKLIEILSEQ---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMK---VLIATS 358 (434)
T ss_dssp GGGHHHHHHHHHHHC---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCS---EEEECG
T ss_pred cHHHHHHHHHHHHhC---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCc---EEEEch
Confidence 356788887777653 44599999999999999999999999999999999999999999999986554 588999
Q ss_pred ccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEec
Q psy7773 247 AGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITV 296 (1281)
Q Consensus 247 ~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~ 296 (1281)
++++|||+..+++||+||+||++..|.||+||++|.|+.-. ++.|+..
T Consensus 359 v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~--a~~~~~~ 406 (434)
T 2db3_A 359 VASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGR--ATSFFDP 406 (434)
T ss_dssp GGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEE--EEEEECT
T ss_pred hhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCE--EEEEEec
Confidence 99999999999999999999999999999999999998644 4444553
No 116
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.32 E-value=4.7e-12 Score=151.55 Aligned_cols=126 Identities=21% Similarity=0.316 Sum_probs=108.9
Q ss_pred cCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecc
Q psy7773 167 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 246 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~ 246 (1281)
...|...|..++... ..+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++... +|++|.
T Consensus 259 ~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---vlvaT~ 334 (417)
T 2i4i_A 259 ESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP---ILVATA 334 (417)
T ss_dssp GGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSC---EEEECH
T ss_pred cHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCC---EEEECC
Confidence 456888888888764 3568999999999999999999999999999999999999999999999976544 588899
Q ss_pred ccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccc
Q psy7773 247 AGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNS 298 (1281)
Q Consensus 247 ~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~T 298 (1281)
++++|+|++.+++||+||+||++..+.|++||++|.|+. -.+|.|+....
T Consensus 335 ~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~~ 384 (417)
T 2i4i_A 335 VAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL--GLATSFFNERN 384 (417)
T ss_dssp HHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CC--EEEEEEECGGG
T ss_pred hhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCC--ceEEEEEcccc
Confidence 999999999999999999999999999999999999975 45555666543
No 117
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.30 E-value=3.9e-12 Score=144.68 Aligned_cols=156 Identities=15% Similarity=0.139 Sum_probs=105.6
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHC---C
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWA---P 619 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~---p 619 (1281)
..|+|+|..++..++. ..+.+.|+..+||+|||++++..+...+........+|||||...| .|+...+..+. +
T Consensus 113 ~~pt~iQ~~ai~~il~--~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~ 190 (300)
T 3fmo_B 113 NRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (300)
T ss_dssp CSCCHHHHHHHHHHTS--SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHHHc--CCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCC
Confidence 5799999999977653 1247889999999999998765544443333333469999998665 78877777765 5
Q ss_pred CCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcc---cccccCceeEEEEeCCccccc---cchHHHHHHHhhh
Q psy7773 620 SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDK---SVLSKIQWKCMIIDEGHRMKN---HHCKLTQTLNTFY 693 (1281)
Q Consensus 620 ~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~---~~l~~~~w~~vIvDEaHr~kn---~~s~~~~~l~~~~ 693 (1281)
.+.+..+.|..... .......+|+|+|++.|.... ..+.-.++.+|||||||++.. .......++..+.
T Consensus 191 ~~~~~~~~~~~~~~-----~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~ 265 (300)
T 3fmo_B 191 ELKLAYAVRGNKLE-----RGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP 265 (300)
T ss_dssp TCCEEEESTTCCCC-----TTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSC
T ss_pred CcEEEEEeCCccHh-----hhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCC
Confidence 67777776653211 111356789999999986643 233334788999999999864 2222233333332
Q ss_pred ccCcEEEeecCCC
Q psy7773 694 NSSHRVLLTGTPL 706 (1281)
Q Consensus 694 ~~~~rllLTgTPl 706 (1281)
+..+.+++|||+-
T Consensus 266 ~~~q~i~~SAT~~ 278 (300)
T 3fmo_B 266 RNCQMLLFSATFE 278 (300)
T ss_dssp TTCEEEEEESCCC
T ss_pred CCCEEEEEeccCC
Confidence 3456789999974
No 118
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.30 E-value=2.1e-10 Score=141.31 Aligned_cols=147 Identities=14% Similarity=0.109 Sum_probs=95.0
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH----HHHHHHHHHHC
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL----SNWVLEFEKWA 618 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l----~~W~~E~~~~~ 618 (1281)
+-.++|-|..|+.-++. | -|....||+|||++++..+.... - ....++||||+..| ..|...|.+++
T Consensus 77 G~~Pt~VQ~~~ip~Llq----G--~IaeakTGeGKTLvf~Lp~~L~a-L--~G~qv~VvTPTreLA~Qdae~m~~l~~~l 147 (997)
T 2ipc_A 77 GMRHFDVQLIGGAVLHE----G--KIAEMKTGEGKTLVATLAVALNA-L--TGKGVHVVTVNDYLARRDAEWMGPVYRGL 147 (997)
T ss_dssp CCCCCHHHHHHHHHHHT----T--SEEECCSTHHHHHHHHHHHHHHH-T--TCSCCEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred CCCCcHHHHhhcccccC----C--ceeeccCCCchHHHHHHHHHHHH-H--hCCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 44789999999976653 3 28889999999998655442211 1 22479999999887 45777777777
Q ss_pred CCCcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHh-----hcc----cccccC---ceeEEEEeCCccccccchHHH
Q psy7773 619 PSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFII-----KDK----SVLSKI---QWKCMIIDEGHRMKNHHCKLT 686 (1281)
Q Consensus 619 p~~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~-----~~~----~~l~~~---~w~~vIvDEaHr~kn~~s~~~ 686 (1281)
++.+.++.|+........ ....+|++.|+..|. ... ..+..- ...++||||+|++.-..
T Consensus 148 -GLsv~~i~Gg~~~~~r~~----ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDe---- 218 (997)
T 2ipc_A 148 -GLSVGVIQHASTPAERRK----AYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDE---- 218 (997)
T ss_dssp -TCCEEECCTTCCHHHHHH----HHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSS----
T ss_pred -CCeEEEEeCCCCHHHHHH----HcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhC----
Confidence 577766665433211111 124799999998873 221 112223 67899999999764322
Q ss_pred HHHHhhhccCcEEEeecCCCCCChhHHHHHH
Q psy7773 687 QTLNTFYNSSHRVLLTGTPLQNKLPELWALL 717 (1281)
Q Consensus 687 ~~l~~~~~~~~rllLTgTPl~n~~~el~~ll 717 (1281)
+..-+++|| |.... ..+|..+
T Consensus 219 --------artPLIISg-p~~~~-~~lY~~~ 239 (997)
T 2ipc_A 219 --------ARTPLIISG-PAEKA-TDLYYKM 239 (997)
T ss_dssp --------TTSCEEEEE-SCSSC-HHHHHHH
T ss_pred --------CCCCeeeeC-CCccc-hHHHHHH
Confidence 223389999 87766 4444443
No 119
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.29 E-value=1.4e-11 Score=146.02 Aligned_cols=122 Identities=20% Similarity=0.350 Sum_probs=105.5
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..|...+..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++... +|++|.+
T Consensus 228 ~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~ 302 (395)
T 3pey_A 228 ADKFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSK---VLITTNV 302 (395)
T ss_dssp HHHHHHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCC---EEEECGG
T ss_pred HHHHHHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCC---EEEECCh
Confidence 35666666666543 567999999999999999999999999999999999999999999999986544 5888999
Q ss_pred cccCCCCCCCCEEEEeCCCC------CcchhhHHhHhhhhcCCCCeEEEEEEEec
Q psy7773 248 GGLGLNLQAADTVIIFDSDW------NPHQDLQAQDRAHRIGQKNEVRVLRLITV 296 (1281)
Q Consensus 248 ~~~GlnL~~a~~vi~~d~~w------np~~~~Qa~gR~~R~Gq~~~V~v~~l~~~ 296 (1281)
+++|+|++.+++||+||+|| |+..+.|++||++|.|+... ++.|+..
T Consensus 303 ~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~ 355 (395)
T 3pey_A 303 LARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGV--AISFVHD 355 (395)
T ss_dssp GSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEE--EEEEECS
T ss_pred hhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCce--EEEEEec
Confidence 99999999999999999999 99999999999999998544 3444444
No 120
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.29 E-value=3.2e-12 Score=163.68 Aligned_cols=129 Identities=19% Similarity=0.251 Sum_probs=83.2
Q ss_pred cCcHHHHHHHHHHHhh--hCCCeEEEEeccHHHHHHHHHHHHhCC----CcEEEecC--------CCCHHHHHHHHHHhc
Q psy7773 167 TSGKFELLDRILPKFK--ETKHRVLMFCQMTQLMTILEDYFIWRD----FSYLRLDG--------TTKSEDRGELLRKFN 232 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~--~~~~kvlIFs~~~~~~~~l~~~l~~~g----~~~~~~~g--------~~~~~~R~~~i~~F~ 232 (1281)
.++|+..|..+|.... ..+.++||||+++..++.|...|...| +.+..++| +++..+|..+++.|+
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~ 457 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC--------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHH
Confidence 5789999999998764 356899999999999999999999998 89988854 999999999999999
Q ss_pred C-CCCCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHH
Q psy7773 233 E-PESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEER 302 (1281)
Q Consensus 233 ~-~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~ 302 (1281)
+ +... +|++|.++++|||++.+++||+||+|||+..+.||+|| +|. +...+|.|++.+++++.
T Consensus 458 ~~g~~~---vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~~~ 521 (696)
T 2ykg_A 458 ASGDHN---ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVIEK 521 (696)
T ss_dssp ---CCS---CSEEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEESCHHHHHH
T ss_pred hcCCcc---EEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCHHHH
Confidence 7 5544 47899999999999999999999999999999999999 885 56788999998887664
No 121
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.29 E-value=2.9e-12 Score=148.48 Aligned_cols=115 Identities=22% Similarity=0.334 Sum_probs=99.0
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEE
Q psy7773 183 ETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVII 262 (1281)
Q Consensus 183 ~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~ 262 (1281)
..+.++||||+....++.+...|. .+..+||+++..+|..+++.|+++... +|++|.++++|+|++.+++||+
T Consensus 218 ~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~---vlv~T~~~~~Gid~~~~~~Vi~ 290 (337)
T 2z0m_A 218 NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYD---MLITTDVASRGLDIPLVEKVIN 290 (337)
T ss_dssp CCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCS---EEEECHHHHTTCCCCCBSEEEE
T ss_pred CCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCc---EEEEcCccccCCCccCCCEEEE
Confidence 467899999999999999988886 678999999999999999999986544 5788999999999999999999
Q ss_pred eCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHH
Q psy7773 263 FDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILA 305 (1281)
Q Consensus 263 ~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~ 305 (1281)
|++|||+..+.|++||++|.|+...+.+|.. ...++...|..
T Consensus 291 ~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~ 332 (337)
T 2z0m_A 291 FDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKK 332 (337)
T ss_dssp SSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC-
T ss_pred ecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHH
Confidence 9999999999999999999999877777765 44445544443
No 122
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.28 E-value=1.2e-11 Score=152.21 Aligned_cols=132 Identities=14% Similarity=0.132 Sum_probs=111.4
Q ss_pred cHHHHHHHHHHHhhhC-CCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEec-c
Q psy7773 169 GKFELLDRILPKFKET-KHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLST-R 246 (1281)
Q Consensus 169 ~K~~~L~~ll~~~~~~-~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st-~ 246 (1281)
.|...+..++...... +.++|||+. +.....|...|...|..+..+||+++..+|..+++.|+++.. .| |++| .
T Consensus 331 ~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~--~v-Lv~T~~ 406 (510)
T 2oca_A 331 KRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKG--II-IVASYG 406 (510)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCS--CE-EEEEHH
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCC--CE-EEEEcC
Confidence 3455566666655443 566777777 888888999999998999999999999999999999997654 35 5555 9
Q ss_pred ccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCC-eEEEEEEEeccchHHHHH
Q psy7773 247 AGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKN-EVRVLRLITVNSVEERIL 304 (1281)
Q Consensus 247 ~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~-~V~v~~l~~~~Tiee~i~ 304 (1281)
++++|+|++.+++||+++++||+..+.|++||++|.|+.+ .|.||.++...++.+.++
T Consensus 407 ~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~~~~~~ 465 (510)
T 2oca_A 407 VFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPKSA 465 (510)
T ss_dssp HHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBCCSSS
T ss_pred hhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeecchhhhhhhh
Confidence 9999999999999999999999999999999999999987 699999999877665444
No 123
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.27 E-value=1.9e-11 Score=146.02 Aligned_cols=136 Identities=20% Similarity=0.336 Sum_probs=111.4
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..|+..|..++... .+.++||||+....+..+...|...|+.+..+||+++..+|..+++.|+++... +|++|.+
T Consensus 251 ~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~---vlv~T~~ 325 (412)
T 3fht_A 251 DEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK---VLVTTNV 325 (412)
T ss_dssp HHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCS---EEEECGG
T ss_pred HHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCc---EEEEcCc
Confidence 35677777776653 567999999999999999999999999999999999999999999999986544 5888999
Q ss_pred cccCCCCCCCCEEEEeCCCCCc------chhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhhcc
Q psy7773 248 GGLGLNLQAADTVIIFDSDWNP------HQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKL 311 (1281)
Q Consensus 248 ~~~GlnL~~a~~vi~~d~~wnp------~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~K~ 311 (1281)
+++|+|++.+++||+||+||++ ..+.|++||++|.|+.. .++.|+... -+..++.......
T Consensus 326 ~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~-~~~~~~~~i~~~~ 392 (412)
T 3fht_A 326 CARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRG--LAVNMVDSK-HSMNILNRIQEHF 392 (412)
T ss_dssp GTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCE--EEEEEECSH-HHHHHHHHHHHHH
T ss_pred cccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCc--eEEEEEcCh-hhHHHHHHHHHHH
Confidence 9999999999999999999987 58999999999999754 344444432 3444555544443
No 124
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.26 E-value=6.1e-12 Score=150.41 Aligned_cols=124 Identities=21% Similarity=0.356 Sum_probs=97.3
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..|+..|..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++..+ +|++|.+
T Consensus 265 ~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---vlv~T~~ 339 (414)
T 3eiq_A 265 EWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSR---VLITTDL 339 (414)
T ss_dssp TTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC------CEEECSS
T ss_pred HhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCc---EEEECCc
Confidence 34888888887654 457999999999999999999999999999999999999999999999886543 5889999
Q ss_pred cccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccc
Q psy7773 248 GGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNS 298 (1281)
Q Consensus 248 ~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~T 298 (1281)
+++|+|++.+++||+||+|||+..+.||+||++|.|+.. .+|.|++.+.
T Consensus 340 ~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~~ 388 (414)
T 3eiq_A 340 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG--VAINMVTEED 388 (414)
T ss_dssp CC--CCGGGCSCEEESSCCSSTHHHHHHSCCC---------CEEEEECSTH
T ss_pred cccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCc--eEEEEEcHHH
Confidence 999999999999999999999999999999999999754 4556666653
No 125
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.25 E-value=1.5e-10 Score=142.71 Aligned_cols=92 Identities=9% Similarity=0.195 Sum_probs=55.0
Q ss_pred HHHHHHhhhh-hhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEecccccc
Q psy7773 875 ELLDRILPKF-KETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGL 953 (1281)
Q Consensus 875 ~~L~~lL~~~-~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~ 953 (1281)
..+...|..+ ...+.++|||+.+...++.+...|.. ++ +.+.|.. ..|..+++.|..+ ..+ .|.++|...++
T Consensus 370 ~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~-~~i-l~~V~~~~~~E 442 (540)
T 2vl7_A 370 PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTG-KYL-VMLVMRAKESE 442 (540)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTS-CCE-EEEEC------
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcC-CeE-EEEEecCceec
Confidence 3344444444 34567899999999999998887754 33 4456654 4789999999874 232 23348899999
Q ss_pred ccCccc----CCEEEEeCCCCChh
Q psy7773 954 GLNLQA----ADTVIIFDSDWNPH 973 (1281)
Q Consensus 954 GlNL~~----ad~VI~~D~~wnp~ 973 (1281)
|||+++ +..||++..|+-+.
T Consensus 443 GiD~~~~~~~~~~Vii~~lPf~~~ 466 (540)
T 2vl7_A 443 GVEFREKENLFESLVLAGLPYPNV 466 (540)
T ss_dssp ---------CEEEEEEESCCCCCT
T ss_pred ceecCCCcccccEEEEECCCCCCC
Confidence 999997 78999999986444
No 126
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.24 E-value=3.2e-11 Score=147.97 Aligned_cols=118 Identities=19% Similarity=0.229 Sum_probs=105.5
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..++..|..++... .+.++||||..+...+.+...|...|+.+..+||+++..+|..+++.|.++... +|++|.+
T Consensus 221 ~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~---vlVaT~a 295 (523)
T 1oyw_A 221 FKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQ---IVVATVA 295 (523)
T ss_dssp SSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEECTT
T ss_pred CCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe---EEEEech
Confidence 45677777777653 668999999999999999999999999999999999999999999999986544 5788999
Q ss_pred cccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEE
Q psy7773 248 GGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRV 290 (1281)
Q Consensus 248 ~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v 290 (1281)
+|.|||+..++.||+|++|||+..+.|++||++|.|+...+.+
T Consensus 296 ~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l 338 (523)
T 1oyw_A 296 FGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (523)
T ss_dssp SCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEE
T ss_pred hhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEE
Confidence 9999999999999999999999999999999999998655444
No 127
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.19 E-value=2.9e-11 Score=151.55 Aligned_cols=111 Identities=13% Similarity=0.128 Sum_probs=98.6
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHHhCCCc--------EEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCC
Q psy7773 183 ETKHRVLMFCQMTQLMTILEDYFIWRDFS--------YLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNL 254 (1281)
Q Consensus 183 ~~~~kvlIFs~~~~~~~~l~~~l~~~g~~--------~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL 254 (1281)
..+.|+||||++...++.|...|...+.. ++.++|.++. +|..+++.|++++..+.++|++|+++++|+|+
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDi 515 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDA 515 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccc
Confidence 34689999999999999999999776543 7789999863 79999999998776677899999999999999
Q ss_pred CCCCEEEEeCCCCCcchhhHHhHhhhhcCC---CCeEEEEEEE
Q psy7773 255 QAADTVIIFDSDWNPHQDLQAQDRAHRIGQ---KNEVRVLRLI 294 (1281)
Q Consensus 255 ~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq---~~~V~v~~l~ 294 (1281)
+.+++||+++++||+..+.|++||++|.|+ +..+.||.++
T Consensus 516 p~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 516 PTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp TTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred hheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 999999999999999999999999999995 4558899877
No 128
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.17 E-value=1e-10 Score=145.14 Aligned_cols=105 Identities=16% Similarity=0.161 Sum_probs=97.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEEe
Q psy7773 184 TKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIF 263 (1281)
Q Consensus 184 ~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~ 263 (1281)
.+.++||||......+.|...|...|+.+..+||+++..+|..+++.|.++... +|++|.++|.|||+..++.||+|
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~---VlVAT~a~~~GID~p~V~~VI~~ 342 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQ---VVVATVAFGMGIDKPDVRFVIHH 342 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSS---EEEECTTSCTTCCCSCEEEEEES
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCe---EEEEechhhcCCCcccccEEEEe
Confidence 578999999999999999999999999999999999999999999999986554 58889999999999999999999
Q ss_pred CCCCCcchhhHHhHhhhhcCCCCeEEEE
Q psy7773 264 DSDWNPHQDLQAQDRAHRIGQKNEVRVL 291 (1281)
Q Consensus 264 d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~ 291 (1281)
++|+++..|.|++||++|.|+...+.++
T Consensus 343 ~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 343 SMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp SCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred CCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 9999999999999999999986655544
No 129
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.16 E-value=1.1e-10 Score=145.95 Aligned_cols=120 Identities=17% Similarity=0.321 Sum_probs=101.9
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHHhC---CCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCE
Q psy7773 183 ETKHRVLMFCQMTQLMTILEDYFIWR---DFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADT 259 (1281)
Q Consensus 183 ~~~~kvlIFs~~~~~~~~l~~~l~~~---g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~ 259 (1281)
..+.++||||......+.+...|... |+.+..+||+++..+|..+++.|.++... +|++|.++++|||+..+++
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~---vLVaT~~~~~GiDip~v~~ 362 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESG---ILVCTDVGARGMDFPNVHE 362 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSE---EEEECGGGTSSCCCTTCCE
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCe---EEEEcchhhcCCCcccCCE
Confidence 45789999999999999999999877 99999999999999999999999975543 5788999999999999999
Q ss_pred EEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhh
Q psy7773 260 VIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARY 309 (1281)
Q Consensus 260 vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~ 309 (1281)
||+||+||++..+.|++||++|.|+... ++.|++.. |..++..+..
T Consensus 363 VI~~~~p~s~~~y~Qr~GRagR~g~~g~--~i~~~~~~--e~~~~~~l~~ 408 (579)
T 3sqw_A 363 VLQIGVPSELANYIHRIGRTARSGKEGS--SVLFICKD--ELPFVRELED 408 (579)
T ss_dssp EEEESCCSSTTHHHHHHTTSSCTTCCEE--EEEEEEGG--GHHHHHHHHH
T ss_pred EEEcCCCCCHHHhhhhccccccCCCCce--EEEEEccc--HHHHHHHHHH
Confidence 9999999999999999999999997544 44445554 4444444443
No 130
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.15 E-value=3.8e-12 Score=151.08 Aligned_cols=121 Identities=20% Similarity=0.360 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccc
Q psy7773 170 KFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGG 249 (1281)
Q Consensus 170 K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~ 249 (1281)
|...+..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++... +|++|.+++
T Consensus 246 ~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~---vlv~T~~~~ 320 (394)
T 1fuu_A 246 KYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTDLLA 320 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCc---EEEECChhh
Confidence 666666666543 457999999999999999999999999999999999999999999999875543 578899999
Q ss_pred cCCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEecc
Q psy7773 250 LGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVN 297 (1281)
Q Consensus 250 ~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~ 297 (1281)
+|+|++.+++||+|++||++..+.|++||++|.|+...+ +.|+..+
T Consensus 321 ~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~--~~~~~~~ 366 (394)
T 1fuu_A 321 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVA--INFVTNE 366 (394)
T ss_dssp ------------------------------------------------
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceE--EEEEchh
Confidence 999999999999999999999999999999999986544 4445544
No 131
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.14 E-value=1.5e-10 Score=144.19 Aligned_cols=120 Identities=17% Similarity=0.320 Sum_probs=101.9
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHHhC---CCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCE
Q psy7773 183 ETKHRVLMFCQMTQLMTILEDYFIWR---DFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADT 259 (1281)
Q Consensus 183 ~~~~kvlIFs~~~~~~~~l~~~l~~~---g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~ 259 (1281)
..+.++||||......+.+...|... |+.+..+||+++..+|..+++.|.++... +|++|.+++.|||+..+++
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~---vLvaT~~~~~GiDip~v~~ 413 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESG---ILVCTDVGARGMDFPNVHE 413 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSE---EEEECGGGTSSCCCTTCCE
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCC---EEEEcchhhcCCCcccCCE
Confidence 45789999999999999999999876 99999999999999999999999985543 5888999999999999999
Q ss_pred EEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHHHHHHHHhh
Q psy7773 260 VIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARY 309 (1281)
Q Consensus 260 vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee~i~~~~~~ 309 (1281)
||+||+|+++..+.|++||++|.|+.- .++.|+..+ |...+..+..
T Consensus 414 VI~~~~p~s~~~y~Qr~GRagR~g~~g--~~i~~~~~~--e~~~~~~l~~ 459 (563)
T 3i5x_A 414 VLQIGVPSELANYIHRIGRTARSGKEG--SSVLFICKD--ELPFVRELED 459 (563)
T ss_dssp EEEESCCSSTTHHHHHHTTSSCTTCCE--EEEEEEEGG--GHHHHHHHHH
T ss_pred EEEECCCCchhhhhhhcCccccCCCCc--eEEEEEchh--HHHHHHHHHH
Confidence 999999999999999999999999754 444455554 3444444443
No 132
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.02 E-value=7e-10 Score=132.56 Aligned_cols=116 Identities=18% Similarity=0.148 Sum_probs=98.6
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEE-EecCCCCHHHHHHHHHHhcCCCCCceEEEEe--
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYL-RLDGTTKSEDRGELLRKFNEPESKYFIFLLS-- 244 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~-~~~g~~~~~~R~~~i~~F~~~~~~~~vll~s-- 244 (1281)
..|...|..++.. .+.++||||+.....+.+...|...|+.+. .+||. +|. ++.|+++. +.|++++
T Consensus 238 ~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~--~~vLvat~s 306 (414)
T 3oiy_A 238 SRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGK--INILIGVQA 306 (414)
T ss_dssp SCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTS--CSEEEEECC
T ss_pred cCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCC--CeEEEEecC
Confidence 4677888888876 458999999999999999999999999998 99984 444 99999865 4465553
Q ss_pred -ccccccCCCCCC-CCEEEEeCCC--CCcchhhHHhHhhhhcCCC--CeEEEEEEE
Q psy7773 245 -TRAGGLGLNLQA-ADTVIIFDSD--WNPHQDLQAQDRAHRIGQK--NEVRVLRLI 294 (1281)
Q Consensus 245 -t~~~~~GlnL~~-a~~vi~~d~~--wnp~~~~Qa~gR~~R~Gq~--~~V~v~~l~ 294 (1281)
|.++++|||++. +++||+||+| |++..+.|++||++|.|+. +.-.++.|+
T Consensus 307 ~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 307 YYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp TTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred cCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 999999999999 9999999999 9999999999999999975 455566666
No 133
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=98.97 E-value=1.7e-09 Score=135.99 Aligned_cols=124 Identities=15% Similarity=0.116 Sum_probs=107.8
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
.+++..|...|......+.++||||......+.|...|...|+++..+||+++..+|..++..|..+... +|++|.+
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~---VLvaT~~ 498 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYD---CLVGINL 498 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCS---EEEESCC
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCce---EEEccCh
Confidence 4577777777777777889999999999999999999999999999999999999999999999875543 5788899
Q ss_pred cccCCCCCCCCEEEEeCC-----CCCcchhhHHhHhhhhcCCCCeEEEEEEEecc
Q psy7773 248 GGLGLNLQAADTVIIFDS-----DWNPHQDLQAQDRAHRIGQKNEVRVLRLITVN 297 (1281)
Q Consensus 248 ~~~GlnL~~a~~vi~~d~-----~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~ 297 (1281)
++.|+|+..+++||++|. |+++..+.|++||++|.|.- .++.|+...
T Consensus 499 l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~G---~~i~~~~~~ 550 (664)
T 1c4o_A 499 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARG---EVWLYADRV 550 (664)
T ss_dssp CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTC---EEEEECSSC
T ss_pred hhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCCC---EEEEEEcCC
Confidence 999999999999999998 99999999999999998642 344455544
No 134
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.95 E-value=7.6e-11 Score=143.85 Aligned_cols=116 Identities=22% Similarity=0.351 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecccc
Q psy7773 169 GKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAG 248 (1281)
Q Consensus 169 ~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~ 248 (1281)
.|+..|..++... .+.++||||+.......|...|...|+.+..+||+++..+|..+++.|+++..+ +|++|.++
T Consensus 319 ~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~---iLv~T~~~ 393 (479)
T 3fmp_B 319 EKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK---VLVTTNVC 393 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCc---EEEEcccc
Confidence 4555565555433 456899999999999999999999999999999999999999999999986544 58889999
Q ss_pred ccCCCCCCCCEEEEeCCCCCc------chhhHHhHhhhhcCCCCeEE
Q psy7773 249 GLGLNLQAADTVIIFDSDWNP------HQDLQAQDRAHRIGQKNEVR 289 (1281)
Q Consensus 249 ~~GlnL~~a~~vi~~d~~wnp------~~~~Qa~gR~~R~Gq~~~V~ 289 (1281)
+.|||+..+++||+||+||++ ..+.|++||++|.|+.-.+.
T Consensus 394 ~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i 440 (479)
T 3fmp_B 394 ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAV 440 (479)
T ss_dssp -----------------------------------------------
T ss_pred ccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEE
Confidence 999999999999999999976 68999999999999754443
No 135
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=98.92 E-value=9.1e-09 Score=127.91 Aligned_cols=115 Identities=14% Similarity=0.149 Sum_probs=100.2
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..|+.+|..++......+.++||||......+.|...|...|+++..+||.....+|..+...|+. +. ++++|.+
T Consensus 415 ~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~--g~---VlIATdm 489 (844)
T 1tf5_A 415 EGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQK--GA---VTIATNM 489 (844)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTST--TC---EEEEETT
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCC--Ce---EEEeCCc
Confidence 568888988887766678899999999999999999999999999999999887777655555553 33 5888999
Q ss_pred cccCCCCC--------CCCEEEEeCCCCCcchhhHHhHhhhhcCCCCe
Q psy7773 248 GGLGLNLQ--------AADTVIIFDSDWNPHQDLQAQDRAHRIGQKNE 287 (1281)
Q Consensus 248 ~~~GlnL~--------~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~ 287 (1281)
+|+|+++. +..+||+||.|-++..|.|++||.+|.|..-.
T Consensus 490 AgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~ 537 (844)
T 1tf5_A 490 AGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGI 537 (844)
T ss_dssp SSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred cccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCe
Confidence 99999999 67899999999999999999999999998543
No 136
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=98.92 E-value=3.2e-09 Score=138.98 Aligned_cols=131 Identities=18% Similarity=0.113 Sum_probs=107.6
Q ss_pred HHHHHHHhhh-CCCeEEEEeccHHHHHHHHHHHHhCCCc---------------------------------------EE
Q psy7773 174 LDRILPKFKE-TKHRVLMFCQMTQLMTILEDYFIWRDFS---------------------------------------YL 213 (1281)
Q Consensus 174 L~~ll~~~~~-~~~kvlIFs~~~~~~~~l~~~l~~~g~~---------------------------------------~~ 213 (1281)
+..++..+.. .+.++||||..+...+.+...|...|+. +.
T Consensus 331 l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~ 410 (1010)
T 2xgj_A 331 IYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIG 410 (1010)
T ss_dssp HHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEE
T ss_pred HHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCee
Confidence 4444444443 3458999999999999999888775542 78
Q ss_pred EecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEE----eCC----CCCcchhhHHhHhhhhcCCC
Q psy7773 214 RLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVII----FDS----DWNPHQDLQAQDRAHRIGQK 285 (1281)
Q Consensus 214 ~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~----~d~----~wnp~~~~Qa~gR~~R~Gq~ 285 (1281)
.+||++++.+|..++..|+++..+ +|++|.+++.|||++.+++||+ ||. ||+|..+.|++||++|.|+.
T Consensus 411 ~~Hggl~~~eR~~ve~~F~~G~ik---VLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d 487 (1010)
T 2xgj_A 411 IHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLD 487 (1010)
T ss_dssp EESTTSCHHHHHHHHHHHHTTCCS---EEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTC
T ss_pred EECCCCCHHHHHHHHHHHhcCCCc---EEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCC
Confidence 899999999999999999986544 5888899999999999999999 999 99999999999999999998
Q ss_pred CeEEEEEEEeccchHHHHHHHH
Q psy7773 286 NEVRVLRLITVNSVEERILAAA 307 (1281)
Q Consensus 286 ~~V~v~~l~~~~Tiee~i~~~~ 307 (1281)
....+|.++..+.-+..+....
T Consensus 488 ~~G~vi~l~~~~~e~~~~~~l~ 509 (1010)
T 2xgj_A 488 DRGIVIMMIDEKMEPQVAKGMV 509 (1010)
T ss_dssp SSEEEEEEECSCCCHHHHHHHH
T ss_pred CceEEEEEECCCCCHHHHHHHH
Confidence 8889999888764444444443
No 137
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.92 E-value=3.9e-09 Score=132.65 Aligned_cols=125 Identities=22% Similarity=0.204 Sum_probs=107.7
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
.+++..|...|......+.++||||......+.|...|...|+++..+||+++..+|..+++.|.++... +|++|.+
T Consensus 428 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~---VLVaT~~ 504 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYD---VLVGINL 504 (661)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCS---EEEESCC
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeE---EEEecch
Confidence 4566777677777667788999999999999999999999999999999999999999999999875543 5788899
Q ss_pred cccCCCCCCCCEEEEeCC-----CCCcchhhHHhHhhhhcCCCCeEEEEEEEeccc
Q psy7773 248 GGLGLNLQAADTVIIFDS-----DWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNS 298 (1281)
Q Consensus 248 ~~~GlnL~~a~~vi~~d~-----~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~T 298 (1281)
++.|+++..+++||++|. |+++..+.|++||++|.+ .-.++.|+...+
T Consensus 505 l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~ 557 (661)
T 2d7d_A 505 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA---EGRVIMYADKIT 557 (661)
T ss_dssp CSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTST---TCEEEEECSSCC
T ss_pred hhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCCC---CCEEEEEEeCCC
Confidence 999999999999999998 999999999999999973 333555666544
No 138
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=98.92 E-value=2.1e-10 Score=140.69 Aligned_cols=119 Identities=18% Similarity=0.296 Sum_probs=83.5
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..|...+..++... .+.++||||+....+..+...|...|+.+..+||+++..+|..+++.|+++..+ +|++|.+
T Consensus 342 ~~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~---VLVaT~~ 416 (508)
T 3fho_A 342 EHKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSK---VLVTTNV 416 (508)
T ss_dssp HHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCC---CCEECC-
T ss_pred HHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCe---EEEeCCh
Confidence 45666777766543 567999999999999999999999999999999999999999999999976544 5888899
Q ss_pred cccCCCCCCCCEEEEeCCC------CCcchhhHHhHhhhhcCCCCeEEEE
Q psy7773 248 GGLGLNLQAADTVIIFDSD------WNPHQDLQAQDRAHRIGQKNEVRVL 291 (1281)
Q Consensus 248 ~~~GlnL~~a~~vi~~d~~------wnp~~~~Qa~gR~~R~Gq~~~V~v~ 291 (1281)
+++|+|+..+++||+||+| +++..+.|++||++|.|+...+.++
T Consensus 417 l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l 466 (508)
T 3fho_A 417 IARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINF 466 (508)
T ss_dssp ----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEE
T ss_pred hhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEE
Confidence 9999999999999999999 7899999999999999976555444
No 139
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.89 E-value=1.1e-08 Score=124.17 Aligned_cols=115 Identities=16% Similarity=0.155 Sum_probs=99.4
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..|+.+|...+......+.+|||||.+....+.|...|...|+++..++|.....++..+...|.. +. ++++|..
T Consensus 457 ~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~--g~---VtVATdm 531 (822)
T 3jux_A 457 KEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQK--GM---VTIATNM 531 (822)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHST--TC---EEEEETT
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCC--Ce---EEEEcch
Confidence 468899999888877778999999999999999999999999999999999655555555556654 33 6889999
Q ss_pred cccCCCCC--------CCCEEEEeCCCCCcchhhHHhHhhhhcCCCCe
Q psy7773 248 GGLGLNLQ--------AADTVIIFDSDWNPHQDLQAQDRAHRIGQKNE 287 (1281)
Q Consensus 248 ~~~GlnL~--------~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~ 287 (1281)
+|.|+++. +..+||++++|-++..+.|++||++|.|..-.
T Consensus 532 AgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~ 579 (822)
T 3jux_A 532 AGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGE 579 (822)
T ss_dssp TTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCE
T ss_pred hhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCee
Confidence 99999997 66799999999999999999999999998654
No 140
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.88 E-value=1.5e-07 Score=117.17 Aligned_cols=82 Identities=15% Similarity=0.255 Sum_probs=61.1
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHC--CCC
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWA--PSA 621 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~--p~~ 621 (1281)
++||+|.+.+.-+.....++.++|+..+||+|||+..+..+...+... ..+++|++|+..+ .|+.+++.++. ..+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 689999999987777777788999999999999999876655444332 2589999997655 88989987654 256
Q ss_pred cEEEEeC
Q psy7773 622 NVVAYKG 628 (1281)
Q Consensus 622 ~~~~~~g 628 (1281)
+++++.|
T Consensus 81 ~~~~l~g 87 (620)
T 4a15_A 81 RAIPMQG 87 (620)
T ss_dssp CEEECCC
T ss_pred EEEEEEC
Confidence 6655544
No 141
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.84 E-value=3.5e-09 Score=115.90 Aligned_cols=151 Identities=15% Similarity=0.132 Sum_probs=93.1
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCC--CCCEEEEeCCccH-HHHHHHHHHHCCCC
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKN--LGPYLVIVPLSTL-SNWVLEFEKWAPSA 621 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~--~~~~LIV~P~s~l-~~W~~E~~~~~p~~ 621 (1281)
.+++||..++..+.. +...++..++|+|||.+...++.......+. ...+++++|...+ .+....+...+...
T Consensus 61 p~~~~q~~~i~~i~~----g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 61 PVKKFESEILEAISQ----NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp GGGGGHHHHHHHHHH----CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred ChHHHHHHHHHHHhc----CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 588999999988764 6678899999999997765555443333222 2368899998766 55666666554311
Q ss_pred --cEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccc-cccchH--HHHHHHhhhccC
Q psy7773 622 --NVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRM-KNHHCK--LTQTLNTFYNSS 696 (1281)
Q Consensus 622 --~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~-kn~~s~--~~~~l~~~~~~~ 696 (1281)
..+.|... ..........+|+|+|++.+...... .-.++++|||||||++ -..... ..+.+...++..
T Consensus 137 ~~~~~g~~~~------~~~~~~~~~~~Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~ 209 (235)
T 3llm_A 137 PGKSCGYSVR------FESILPRPHASIMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEV 209 (235)
T ss_dssp TTSSEEEEET------TEEECCCSSSEEEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTS
T ss_pred cCceEEEeec------hhhccCCCCCeEEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCC
Confidence 11112110 00111124578999999888765322 1236789999999985 222211 223333333456
Q ss_pred cEEEeecCCC
Q psy7773 697 HRVLLTGTPL 706 (1281)
Q Consensus 697 ~rllLTgTPl 706 (1281)
+.+++|||+-
T Consensus 210 ~~il~SAT~~ 219 (235)
T 3llm_A 210 RIVLMSATID 219 (235)
T ss_dssp EEEEEECSSC
T ss_pred eEEEEecCCC
Confidence 7899999974
No 142
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.82 E-value=5.5e-09 Score=138.83 Aligned_cols=122 Identities=14% Similarity=0.134 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhC--CCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 170 KFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR--DFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 170 K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~--g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
+......++.. ...+.+++|||+....++.+...|... ++.+..+||.++..+|..++..|.++..+ +|++|.+
T Consensus 798 ~~~i~~~il~~-l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~---VLVaT~v 873 (1151)
T 2eyq_A 798 SMVVREAILRE-ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN---VLVCTTI 873 (1151)
T ss_dssp HHHHHHHHHHH-HTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCC---EEEESST
T ss_pred HHHHHHHHHHH-HhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCc---EEEECCc
Confidence 33344444444 346789999999999999999999877 88999999999999999999999976544 5788899
Q ss_pred cccCCCCCCCCEEEEeCC-CCCcchhhHHhHhhhhcCCCCeEEEEEEEecc
Q psy7773 248 GGLGLNLQAADTVIIFDS-DWNPHQDLQAQDRAHRIGQKNEVRVLRLITVN 297 (1281)
Q Consensus 248 ~~~GlnL~~a~~vi~~d~-~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~ 297 (1281)
+++|||++.+++||++++ +|++..+.|++||++|.|+.. ++|.++..+
T Consensus 874 ~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g--~~~ll~~~~ 922 (1151)
T 2eyq_A 874 IETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA--YAWLLTPHP 922 (1151)
T ss_dssp TGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCE--EEEEEECCG
T ss_pred ceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCce--EEEEEECCc
Confidence 999999999999999988 699999999999999999754 445555543
No 143
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.81 E-value=1.3e-08 Score=134.48 Aligned_cols=136 Identities=18% Similarity=0.129 Sum_probs=107.1
Q ss_pred HHHHHHHHHhhh-CCCeEEEEeccHHHHHHHHHHHHhCCCc---------------------------------------
Q psy7773 172 ELLDRILPKFKE-TKHRVLMFCQMTQLMTILEDYFIWRDFS--------------------------------------- 211 (1281)
Q Consensus 172 ~~L~~ll~~~~~-~~~kvlIFs~~~~~~~~l~~~l~~~g~~--------------------------------------- 211 (1281)
..+..++..+.. .+.++||||......+.+...|...|+.
T Consensus 427 ~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~g 506 (1108)
T 3l9o_A 427 GDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRG 506 (1108)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHT
T ss_pred hHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcC
Confidence 344455555443 4569999999999999998888654332
Q ss_pred EEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEEeCCCCCcch--------hhHHhHhhhhcC
Q psy7773 212 YLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQ--------DLQAQDRAHRIG 283 (1281)
Q Consensus 212 ~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~--------~~Qa~gR~~R~G 283 (1281)
+..+||++++.+|..++..|.++..+ +|++|.+++.|||++.+++||+++.+|++.. |.|++||++|.|
T Consensus 507 V~~~Hg~l~~~~R~~v~~~F~~G~ik---VLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G 583 (1108)
T 3l9o_A 507 IGIHHSGLLPILKEVIEILFQEGFLK---VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG 583 (1108)
T ss_dssp EEEECSCSCHHHHHHHHHHHHHTCCC---EEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSS
T ss_pred eeeecCCCCHHHHHHHHHHHhCCCCe---EEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCC
Confidence 78899999999999999999986544 5888899999999999999999999887765 999999999999
Q ss_pred CCCeEEEEEEEeccchHHHHHHHHhhc
Q psy7773 284 QKNEVRVLRLITVNSVEERILAAARYK 310 (1281)
Q Consensus 284 q~~~V~v~~l~~~~Tiee~i~~~~~~K 310 (1281)
+.....+|.++..+.....+...+..+
T Consensus 584 ~d~~G~~ill~~~~~~~~~~~~l~~~~ 610 (1108)
T 3l9o_A 584 LDDRGIVIMMIDEKMEPQVAKGMVKGQ 610 (1108)
T ss_dssp SCSSEEEEEEECCCCCHHHHHHHHHCC
T ss_pred CCCceEEEEEecCCcCHHHHHHHhcCC
Confidence 988899999888875555554444443
No 144
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=98.81 E-value=2.8e-08 Score=123.21 Aligned_cols=115 Identities=11% Similarity=0.076 Sum_probs=101.8
Q ss_pred cCcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecc
Q psy7773 167 TSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 246 (1281)
Q Consensus 167 ~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~ 246 (1281)
...|+.+|...+..+...+..|||||......+.|...|...|+++..++|.....++..+...|+.+ . ++++|.
T Consensus 423 ~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~---VtIATn 497 (853)
T 2fsf_A 423 EAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--A---VTIATN 497 (853)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--C---EEEEES
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--e---EEEecc
Confidence 35689999998887777888999999999999999999999999999999998877777777788753 3 688999
Q ss_pred ccccCCCCCCC-------------------------------------CEEEEeCCCCCcchhhHHhHhhhhcCCCC
Q psy7773 247 AGGLGLNLQAA-------------------------------------DTVIIFDSDWNPHQDLQAQDRAHRIGQKN 286 (1281)
Q Consensus 247 ~~~~GlnL~~a-------------------------------------~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~ 286 (1281)
.+|+|+++... .+||++|.|-++..+.|++||++|.|..-
T Consensus 498 mAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G 574 (853)
T 2fsf_A 498 MAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAG 574 (853)
T ss_dssp CCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCE
T ss_pred cccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCe
Confidence 99999999853 59999999999999999999999999854
No 145
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.78 E-value=2.2e-08 Score=128.24 Aligned_cols=118 Identities=15% Similarity=0.082 Sum_probs=96.6
Q ss_pred HHHhhhCCCeEEEEeccHHHHHHHHHHHHhCC------------------------------------CcEEEecCCCCH
Q psy7773 178 LPKFKETKHRVLMFCQMTQLMTILEDYFIWRD------------------------------------FSYLRLDGTTKS 221 (1281)
Q Consensus 178 l~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g------------------------------------~~~~~~~g~~~~ 221 (1281)
+......+.++|||+......+.+...|.... ..+..+||+++.
T Consensus 245 ~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~ 324 (715)
T 2va8_A 245 TLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSK 324 (715)
T ss_dssp HHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCH
T ss_pred HHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCH
Confidence 33333567899999999999888888887542 248889999999
Q ss_pred HHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEE----eC-------CCCCcchhhHHhHhhhhcCCCCeEEE
Q psy7773 222 EDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVII----FD-------SDWNPHQDLQAQDRAHRIGQKNEVRV 290 (1281)
Q Consensus 222 ~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~----~d-------~~wnp~~~~Qa~gR~~R~Gq~~~V~v 290 (1281)
.+|..+.+.|.++.-+ +|++|.+++.|||+...++||. || .|+++..+.|++||++|.|+...-.+
T Consensus 325 ~~r~~v~~~f~~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~ 401 (715)
T 2va8_A 325 ALRDLIEEGFRQRKIK---VIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGES 401 (715)
T ss_dssp HHHHHHHHHHHTTCSC---EEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEE
T ss_pred HHHHHHHHHHHcCCCe---EEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceE
Confidence 9999999999986443 5888899999999999999998 99 89999999999999999999888888
Q ss_pred EEEEeccc
Q psy7773 291 LRLITVNS 298 (1281)
Q Consensus 291 ~~l~~~~T 298 (1281)
|.++....
T Consensus 402 ~~l~~~~~ 409 (715)
T 2va8_A 402 IVVVRDKE 409 (715)
T ss_dssp EEECSCGG
T ss_pred EEEeCCch
Confidence 98887765
No 146
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=98.78 E-value=1.5e-08 Score=126.48 Aligned_cols=109 Identities=23% Similarity=0.292 Sum_probs=94.7
Q ss_pred CeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEEeCC
Q psy7773 186 HRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDS 265 (1281)
Q Consensus 186 ~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~ 265 (1281)
...+||+.....++.+...|...|+.+..+||++++.+|..++..|+++++.+.| |++|.+++.|||+ .+++||++++
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~V-LVATdi~e~GlDi-~v~~VI~~~~ 398 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKI-LVATDAIGMGLNL-SIRRIIFYSL 398 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCE-EEECGGGGSSCCC-CBSEEEESCS
T ss_pred CCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEE-EEeCcHHHCCcCc-CccEEEECCc
Confidence 3457888889999999999999999999999999999999999999984444444 7888999999999 9999999999
Q ss_pred --------------CCCcchhhHHhHhhhhcCCC-CeEEEEEEEec
Q psy7773 266 --------------DWNPHQDLQAQDRAHRIGQK-NEVRVLRLITV 296 (1281)
Q Consensus 266 --------------~wnp~~~~Qa~gR~~R~Gq~-~~V~v~~l~~~ 296 (1281)
|++++.+.|++||++|.|+. ..-.+|.+...
T Consensus 399 ~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 399 IKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp BC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred cccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 88999999999999999987 34566666444
No 147
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.78 E-value=1.2e-08 Score=130.27 Aligned_cols=116 Identities=16% Similarity=0.100 Sum_probs=98.9
Q ss_pred hhCCCeEEEEeccHHHHHHHHHHHHhC------------------------------CCcEEEecCCCCHHHHHHHHHHh
Q psy7773 182 KETKHRVLMFCQMTQLMTILEDYFIWR------------------------------DFSYLRLDGTTKSEDRGELLRKF 231 (1281)
Q Consensus 182 ~~~~~kvlIFs~~~~~~~~l~~~l~~~------------------------------g~~~~~~~g~~~~~~R~~~i~~F 231 (1281)
...+.++|||+......+.+...|... +..+..+||+++..+|..+.+.|
T Consensus 239 ~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 318 (702)
T 2p6r_A 239 VAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAF 318 (702)
T ss_dssp HHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHH
T ss_pred HhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHH
Confidence 346789999999998888877777542 13466799999999999999999
Q ss_pred cCCCCCceEEEEeccccccCCCCCCCCEEEE----eC---CCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchH
Q psy7773 232 NEPESKYFIFLLSTRAGGLGLNLQAADTVII----FD---SDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVE 300 (1281)
Q Consensus 232 ~~~~~~~~vll~st~~~~~GlnL~~a~~vi~----~d---~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tie 300 (1281)
.++..+ +|++|.+++.|+|+...++||. || .|+++..+.|++||++|.|+...-.+|.++.....+
T Consensus 319 ~~g~~~---vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 319 RRGNIK---VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDRE 391 (702)
T ss_dssp HTTSCC---EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHH
T ss_pred HCCCCe---EEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHH
Confidence 986443 5889999999999999999998 77 789999999999999999998888999999887754
No 148
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=98.74 E-value=7.9e-08 Score=119.36 Aligned_cols=114 Identities=14% Similarity=0.078 Sum_probs=99.9
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccc
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~ 247 (1281)
..|+.+|...+......|..|||||......+.|...|...|+++..++|.....++..+...|+.+ . ++++|..
T Consensus 443 ~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G--~---VtIATnm 517 (922)
T 1nkt_A 443 EAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG--G---VTVATNM 517 (922)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT--C---EEEEETT
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--e---EEEecch
Confidence 4689999888887777888999999999999999999999999999999998766666666777653 3 5888999
Q ss_pred cccCCCCCCC----------------------------------------------------CEEEEeCCCCCcchhhHH
Q psy7773 248 GGLGLNLQAA----------------------------------------------------DTVIIFDSDWNPHQDLQA 275 (1281)
Q Consensus 248 ~~~GlnL~~a----------------------------------------------------~~vi~~d~~wnp~~~~Qa 275 (1281)
+|+|+++... .+||++|.|-++..+.|+
T Consensus 518 AgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr 597 (922)
T 1nkt_A 518 AGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQL 597 (922)
T ss_dssp CSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHH
T ss_pred hhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHH
Confidence 9999999853 499999999999999999
Q ss_pred hHhhhhcCCCC
Q psy7773 276 QDRAHRIGQKN 286 (1281)
Q Consensus 276 ~gR~~R~Gq~~ 286 (1281)
+||.+|.|..-
T Consensus 598 ~GRTGRqGdpG 608 (922)
T 1nkt_A 598 RGRSGRQGDPG 608 (922)
T ss_dssp HHTSSGGGCCE
T ss_pred hcccccCCCCe
Confidence 99999999854
No 149
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.73 E-value=2e-08 Score=128.56 Aligned_cols=116 Identities=16% Similarity=0.071 Sum_probs=99.5
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHHhC------------------C---------------CcEEEecCCCCHHHHHHHHH
Q psy7773 183 ETKHRVLMFCQMTQLMTILEDYFIWR------------------D---------------FSYLRLDGTTKSEDRGELLR 229 (1281)
Q Consensus 183 ~~~~kvlIFs~~~~~~~~l~~~l~~~------------------g---------------~~~~~~~g~~~~~~R~~~i~ 229 (1281)
..+.++|||+..+...+.+...|... + ..+..+||+++..+|..+.+
T Consensus 235 ~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~ 314 (720)
T 2zj8_A 235 RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEE 314 (720)
T ss_dssp HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHH
T ss_pred hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 46789999999998888877777542 1 24889999999999999999
Q ss_pred HhcCCCCCceEEEEeccccccCCCCCCCCEEEE----eC----CCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccchHH
Q psy7773 230 KFNEPESKYFIFLLSTRAGGLGLNLQAADTVII----FD----SDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEE 301 (1281)
Q Consensus 230 ~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~----~d----~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Tiee 301 (1281)
.|.++..+ +|++|.+++.|+|+...++||. || .|+++..+.|++||++|.|+...-.+|.+++....+.
T Consensus 315 ~f~~g~~~---vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 315 NFRKGIIK---AVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPRE 391 (720)
T ss_dssp HHHTTSSC---EEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHH
T ss_pred HHHCCCCe---EEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHH
Confidence 99986443 5788899999999999999998 77 6899999999999999999988888999998887544
No 150
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=98.67 E-value=1.9e-08 Score=120.59 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=77.5
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEE
Q psy7773 183 ETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVII 262 (1281)
Q Consensus 183 ~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~ 262 (1281)
..+.++||||......+.+...|...|+.+..+|| .+|..++..|.++..+ +|++|.+++.|||+. +++||+
T Consensus 175 ~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~---vLVaT~v~e~GiDip-v~~VI~ 246 (440)
T 1yks_A 175 ADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPD---FILATDIAEMGANLC-VERVLD 246 (440)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CCCS---EEEESSSTTCCTTCC-CSEEEE
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCce---EEEECChhheeeccC-ceEEEe
Confidence 45789999999999999999999999999999999 4688999999986554 588999999999999 999885
Q ss_pred -------------------eCCCCCcchhhHHhHhhhhcCC
Q psy7773 263 -------------------FDSDWNPHQDLQAQDRAHRIGQ 284 (1281)
Q Consensus 263 -------------------~d~~wnp~~~~Qa~gR~~R~Gq 284 (1281)
|+.|.++..+.|++||++|.|.
T Consensus 247 ~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~ 287 (440)
T 1yks_A 247 CRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPN 287 (440)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred CCccceeeecccccceeeccccccCHHHHHHhccccCCCCC
Confidence 8999999999999999999853
No 151
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.66 E-value=5.8e-08 Score=119.95 Aligned_cols=131 Identities=19% Similarity=0.203 Sum_probs=92.8
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCC--C
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAP--S 620 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p--~ 620 (1281)
.++||||.+.+.-+......+.++|+..+||+|||+..+..+.. ...++||++|+..+ .||..++.++.. +
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~ 75 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRN 75 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcC
Confidence 37999999998877777777888999999999999987765544 23589999998655 889999987642 5
Q ss_pred CcEEEEeCCHHH---------------------------------HHHHH----------------hhhccCCccEEEec
Q psy7773 621 ANVVAYKGSPLA---------------------------------RRALQ----------------GRMKNSKFNVLLTT 651 (1281)
Q Consensus 621 ~~~~~~~g~~~~---------------------------------r~~~~----------------~~~~~~~~~vvItT 651 (1281)
++++++.|.... ..... ........+|||||
T Consensus 76 ~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~ 155 (551)
T 3crv_A 76 ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALT 155 (551)
T ss_dssp CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEE
T ss_pred ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeC
Confidence 677777663221 00000 01112457999999
Q ss_pred hHHHhhcc--cccc-cCceeEEEEeCCccccc
Q psy7773 652 YEFIIKDK--SVLS-KIQWKCMIIDEGHRMKN 680 (1281)
Q Consensus 652 ye~l~~~~--~~l~-~~~w~~vIvDEaHr~kn 680 (1281)
|..|..+. ..+. .....+|||||||++-.
T Consensus 156 ~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 156 YPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp THHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred chHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99998762 1121 13567899999999976
No 152
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.66 E-value=6.8e-09 Score=131.58 Aligned_cols=120 Identities=15% Similarity=0.220 Sum_probs=97.1
Q ss_pred cHHHHHHHHHHHhhhCCCeEEEEeccH--------HHHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHhcCCCCC
Q psy7773 169 GKFELLDRILPKFKETKHRVLMFCQMT--------QLMTILEDYFIW---RDFSYLRLDGTTKSEDRGELLRKFNEPESK 237 (1281)
Q Consensus 169 ~K~~~L~~ll~~~~~~~~kvlIFs~~~--------~~~~~l~~~l~~---~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~ 237 (1281)
.+...+...+......+.+++|||... ..+..+...|.. .|+.+..+||+++..+|..+++.|.++..+
T Consensus 562 ~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ 641 (780)
T 1gm5_A 562 DRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYD 641 (780)
T ss_dssp STHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSS
T ss_pred chHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCe
Confidence 445556666666667789999999854 345667777877 478899999999999999999999986554
Q ss_pred ceEEEEeccccccCCCCCCCCEEEEeCCCC-CcchhhHHhHhhhhcCCCCeEEEE
Q psy7773 238 YFIFLLSTRAGGLGLNLQAADTVIIFDSDW-NPHQDLQAQDRAHRIGQKNEVRVL 291 (1281)
Q Consensus 238 ~~vll~st~~~~~GlnL~~a~~vi~~d~~w-np~~~~Qa~gR~~R~Gq~~~V~v~ 291 (1281)
+|++|.+++.|+|++.+++||++|+++ +.+.+.|++||++|.|+...|.++
T Consensus 642 ---ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill 693 (780)
T 1gm5_A 642 ---ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLV 693 (780)
T ss_dssp ---BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECC
T ss_pred ---EEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEE
Confidence 588999999999999999999999985 789999999999999987655443
No 153
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=98.63 E-value=9.9e-08 Score=124.93 Aligned_cols=133 Identities=18% Similarity=0.141 Sum_probs=109.2
Q ss_pred cHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCC--------------------------------------
Q psy7773 169 GKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDF-------------------------------------- 210 (1281)
Q Consensus 169 ~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~-------------------------------------- 210 (1281)
.++..|...|.. ....++||||......+.+...|...|+
T Consensus 322 ~~~~~li~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~ 399 (997)
T 4a4z_A 322 KTWPEIVNYLRK--RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLE 399 (997)
T ss_dssp THHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhh
Confidence 455566666544 2457999999999999999999977666
Q ss_pred -cEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEEeCCCC---------CcchhhHHhHhhh
Q psy7773 211 -SYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDW---------NPHQDLQAQDRAH 280 (1281)
Q Consensus 211 -~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~w---------np~~~~Qa~gR~~ 280 (1281)
.+..+||++++.+|..++..|..+..+ +|++|.+++.|||+.. .+||+++.++ ++..+.|++||++
T Consensus 400 ~gi~~~H~gl~~~~R~~v~~~F~~G~~k---VLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAG 475 (997)
T 4a4z_A 400 RGIAVHHGGLLPIVKELIEILFSKGFIK---VLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAG 475 (997)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTCCS---EEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGC
T ss_pred cCeeeecCCCCHHHHHHHHHHHHCCCCc---EEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccc
Confidence 478999999999999999999986654 5888999999999999 6666655555 8999999999999
Q ss_pred hcCCCCeEEEEEEEeccchHHHHHHHH
Q psy7773 281 RIGQKNEVRVLRLITVNSVEERILAAA 307 (1281)
Q Consensus 281 R~Gq~~~V~v~~l~~~~Tiee~i~~~~ 307 (1281)
|.|+.....+|.++..+..+..++...
T Consensus 476 R~G~~~~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 476 RRGLDSTGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp CTTTCSSEEEEEECCSSCCCHHHHHHH
T ss_pred cCCCCcceEEEEecCCCcchHHHHHHH
Confidence 999988888888887777777666554
No 154
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=98.62 E-value=6.1e-08 Score=116.73 Aligned_cols=96 Identities=16% Similarity=0.144 Sum_probs=85.7
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEE
Q psy7773 183 ETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVII 262 (1281)
Q Consensus 183 ~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~ 262 (1281)
..+.++||||+.....+.+...|...|+.+..+||.+. ..+++.|.++..+ +|++|.+++.|||+.. ++||+
T Consensus 186 ~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~---vLVaT~v~~~GiDip~-~~VI~ 257 (451)
T 2jlq_A 186 DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWD---FVVTTDISEMGANFRA-GRVID 257 (451)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCS---EEEECGGGGSSCCCCC-SEEEE
T ss_pred hCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCce---EEEECCHHHhCcCCCC-CEEEE
Confidence 34679999999999999999999999999999999754 5789999986554 5889999999999999 99999
Q ss_pred eC--------------------CCCCcchhhHHhHhhhhcCCCC
Q psy7773 263 FD--------------------SDWNPHQDLQAQDRAHRIGQKN 286 (1281)
Q Consensus 263 ~d--------------------~~wnp~~~~Qa~gR~~R~Gq~~ 286 (1281)
|| +|.++..+.|++||++|.|...
T Consensus 258 ~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~ 301 (451)
T 2jlq_A 258 PRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQE 301 (451)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred CCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCC
Confidence 98 8999999999999999999833
No 155
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=98.59 E-value=6.6e-08 Score=121.05 Aligned_cols=96 Identities=16% Similarity=0.193 Sum_probs=85.4
Q ss_pred hhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEE
Q psy7773 182 KETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVI 261 (1281)
Q Consensus 182 ~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi 261 (1281)
...+.++||||......+.+...|...|+.+..+|| .+|..+++.|.++..+ +|++|.+++.|||+. +++||
T Consensus 407 ~~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg----~eR~~v~~~F~~g~~~---VLVaTdv~e~GIDip-v~~VI 478 (673)
T 2wv9_A 407 TDYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNR----KSYDTEYPKCKNGDWD---FVITTDISEMGANFG-ASRVI 478 (673)
T ss_dssp HSCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECS----SSHHHHGGGGGTCCCS---EEEECGGGGTTCCCC-CSEEE
T ss_pred HhCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeCh----HHHHHHHHHHHCCCce---EEEECchhhcceeeC-CcEEE
Confidence 346789999999999999999999999999999999 3799999999986554 588899999999999 99998
Q ss_pred E--------------------eCCCCCcchhhHHhHhhhhc-CCC
Q psy7773 262 I--------------------FDSDWNPHQDLQAQDRAHRI-GQK 285 (1281)
Q Consensus 262 ~--------------------~d~~wnp~~~~Qa~gR~~R~-Gq~ 285 (1281)
+ ||+|.++..+.|++||++|. |+.
T Consensus 479 ~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~ 523 (673)
T 2wv9_A 479 DCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQI 523 (673)
T ss_dssp ECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCC
T ss_pred ECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCC
Confidence 7 67888999999999999999 444
No 156
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=98.59 E-value=3.2e-08 Score=119.43 Aligned_cols=105 Identities=13% Similarity=0.103 Sum_probs=87.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEE-
Q psy7773 184 TKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVII- 262 (1281)
Q Consensus 184 ~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~- 262 (1281)
.+.++||||......+.|...|...|+.+..++|. +|..++..|.++..+ +|++|.+++.|||+.. ++||+
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~---iLVaT~v~~~GiDip~-~~VI~~ 260 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWD---FVITTDISEMGANFGA-SRVIDC 260 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCS---EEEESSCC---CCCSC-SEEEEC
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCCce---EEEECChHHhCeecCC-CEEEEC
Confidence 46799999999999999999999999999999994 678899999886554 5889999999999999 99998
Q ss_pred -------------------eCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEecc
Q psy7773 263 -------------------FDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVN 297 (1281)
Q Consensus 263 -------------------~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~ 297 (1281)
||+|.++..+.|++||++|.|.... ..|.|++..
T Consensus 261 G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G-~~~~~~~~~ 313 (459)
T 2z83_A 261 RKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVG-DEYHYGGAT 313 (459)
T ss_dssp CEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCC-EEEEECSCC
T ss_pred CcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCC-eEEEEEccc
Confidence 7899999999999999999996332 334555554
No 157
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=98.51 E-value=1e-07 Score=113.94 Aligned_cols=97 Identities=15% Similarity=0.113 Sum_probs=84.6
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCE----
Q psy7773 184 TKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADT---- 259 (1281)
Q Consensus 184 ~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~---- 259 (1281)
.+.++||||+.....+.+...|...|+.+..+||. +|..++..|.++..+ +|++|.+++.|+|+..+..
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~~~---vLVaT~v~e~GiDip~~~VI~~g 242 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEKWD---FVITTDISEMGANFKADRVIDPR 242 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSCCS---EEEECGGGGTSCCCCCSEEEECC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCCCe---EEEECchHHcCcccCCcEEEecC
Confidence 46789999999999999999999999999999997 588899999986554 5889999999999984332
Q ss_pred ------------EEEeCCCCCcchhhHHhHhhhhcCCCCe
Q psy7773 260 ------------VIIFDSDWNPHQDLQAQDRAHRIGQKNE 287 (1281)
Q Consensus 260 ------------vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~ 287 (1281)
||+++.|.++..+.|++||++|.|....
T Consensus 243 ~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~ 282 (431)
T 2v6i_A 243 KTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLG 282 (431)
T ss_dssp EEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCC
T ss_pred ccccceecccceeecccccCCHHHHHHhhhccCCCCCCCC
Confidence 6788999999999999999999996543
No 158
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=98.51 E-value=6.9e-08 Score=120.08 Aligned_cols=104 Identities=13% Similarity=0.111 Sum_probs=88.6
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEE--
Q psy7773 183 ETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTV-- 260 (1281)
Q Consensus 183 ~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~v-- 260 (1281)
..+.++||||+.....+.+...|...|+.+..+||. +|..+++.|.++..+ +|++|.+++.|||+. +++|
T Consensus 353 ~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~---VLVaTdv~~rGiDi~-v~~VId 424 (618)
T 2whx_A 353 DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWD---FVVTTDISEMGANFR-AGRVID 424 (618)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCS---EEEECGGGGTTCCCC-CSEEEE
T ss_pred hCCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcE---EEEECcHHHcCcccC-ceEEEE
Confidence 457799999999999999999999999999999984 688899999876544 588999999999996 8887
Q ss_pred ------------------EEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEe
Q psy7773 261 ------------------IIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLIT 295 (1281)
Q Consensus 261 ------------------i~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~ 295 (1281)
|+||+|-++..+.||+||++|.|..... .|.|++
T Consensus 425 ~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~-ai~l~~ 476 (618)
T 2whx_A 425 PRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDD-QYVFSG 476 (618)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCE-EEEECS
T ss_pred CcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCe-EEEEcc
Confidence 7778888888999999999999864432 455555
No 159
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.47 E-value=9.4e-08 Score=121.97 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=94.6
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHh-----------CCCcEEEecCCCCHHHHHHHHHHhc-----CCCCCceEEEEeccc
Q psy7773 184 TKHRVLMFCQMTQLMTILEDYFIW-----------RDFSYLRLDGTTKSEDRGELLRKFN-----EPESKYFIFLLSTRA 247 (1281)
Q Consensus 184 ~~~kvlIFs~~~~~~~~l~~~l~~-----------~g~~~~~~~g~~~~~~R~~~i~~F~-----~~~~~~~vll~st~~ 247 (1281)
.+.++|||+.....++.+...|.. .++.+..+||+++..+|..+++.|. ++ .. -+|++|.+
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g--~~-kVlVAT~i 378 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRP--GR-KVVISTNI 378 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSC--CE-EEEEECTH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCC--ce-EEEEeCcH
Confidence 578999999999999998888874 6888999999999999999999998 43 33 35888999
Q ss_pred cccCCCCCCCCEEEEeCC------------------CCCcchhhHHhHhhhhcCCCCeEEEEEEEeccch
Q psy7773 248 GGLGLNLQAADTVIIFDS------------------DWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSV 299 (1281)
Q Consensus 248 ~~~GlnL~~a~~vi~~d~------------------~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Ti 299 (1281)
++.|||+...++||.++. |.++..+.||+||++|. ++=.+|+|++...+
T Consensus 379 ae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 379 AETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp HHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred HHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 999999999999999766 88999999999999998 34567888876554
No 160
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=98.43 E-value=1.8e-07 Score=123.61 Aligned_cols=88 Identities=16% Similarity=0.124 Sum_probs=69.1
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEe---
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLS--- 244 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~s--- 244 (1281)
..|...|..++... +.++||||......+.|...|... +.+..+||++. .+++.|.++.. .||+++
T Consensus 261 ~~k~~~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~--~VLVaTas~ 329 (1054)
T 1gku_B 261 DESISTLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEI--DHLIGTAHY 329 (1054)
T ss_dssp CCCTTTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSC--SEEEEECC-
T ss_pred hhHHHHHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCC--cEEEEecCC
Confidence 45666677776543 678999999999999999999988 99999999874 78899997654 465554
Q ss_pred ccccccCCCCCCC-CEEEEeCCC
Q psy7773 245 TRAGGLGLNLQAA-DTVIIFDSD 266 (1281)
Q Consensus 245 t~~~~~GlnL~~a-~~vi~~d~~ 266 (1281)
|.++++|||+..+ ++||+||+|
T Consensus 330 Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 330 YGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp -----CCSCCTTTCCEEEEESCC
T ss_pred CCeeEeccccCCcccEEEEeCCC
Confidence 8999999999995 999999999
No 161
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.33 E-value=6.9e-07 Score=118.06 Aligned_cols=89 Identities=18% Similarity=0.163 Sum_probs=76.0
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEE-EecCCCCHHHHHHHHHHhcCCCCCceEEEEe--
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYL-RLDGTTKSEDRGELLRKFNEPESKYFIFLLS-- 244 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~-~~~g~~~~~~R~~~i~~F~~~~~~~~vll~s-- 244 (1281)
..|...|..+|.. .+.++||||+.....+.|...|...|+.+. .+|| +|.+ ++.|.++..+ |||++
T Consensus 295 ~~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~--VLVatas 363 (1104)
T 4ddu_A 295 SRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKIN--ILIGVQA 363 (1104)
T ss_dssp CCCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCS--EEEEETT
T ss_pred cCHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCC--EEEEecC
Confidence 3577888888776 358999999999999999999999999998 9999 3555 9999986544 54443
Q ss_pred -ccccccCCCCCC-CCEEEEeCCCC
Q psy7773 245 -TRAGGLGLNLQA-ADTVIIFDSDW 267 (1281)
Q Consensus 245 -t~~~~~GlnL~~-a~~vi~~d~~w 267 (1281)
|.+++.|||+.. +++||+||+|-
T Consensus 364 ~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 364 YYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp THHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCCeeEecCcCCCCCCEEEEECCCC
Confidence 999999999999 99999999997
No 162
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=98.25 E-value=7.9e-07 Score=109.71 Aligned_cols=101 Identities=18% Similarity=0.178 Sum_probs=84.3
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEE--
Q psy7773 184 TKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVI-- 261 (1281)
Q Consensus 184 ~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi-- 261 (1281)
.+.++|||++.....+.+...|...|+.+..+||++++.+ |.++. . -+|++|.+++.|||+. +++||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~--~-~VLVATdVaerGIDId-V~~VI~~ 463 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIG--D-VVVVATDALMTGYTGD-FDSVIDC 463 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSS--C-EEEEECTTHHHHCCCC-BSEEEEC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCC--C-cEEEECChHHccCCCC-CcEEEec
Confidence 5689999999999999999999999999999999999764 43322 2 3688999999999986 88887
Q ss_pred --------EeC-----------CCCCcchhhHHhHhhhhcCCCCeEEEEEEEeccch
Q psy7773 262 --------IFD-----------SDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSV 299 (1281)
Q Consensus 262 --------~~d-----------~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~~Ti 299 (1281)
+|| .|-++..+.||+||++| |..- . |.|++....
T Consensus 464 Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G-~--i~lvt~~e~ 516 (666)
T 3o8b_A 464 NTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRG-I--YRFVTPGER 516 (666)
T ss_dssp CEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE-E--EEESCCCCB
T ss_pred CcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCC-E--EEEEecchh
Confidence 677 78888999999999999 6543 3 788877654
No 163
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=97.63 E-value=0.00015 Score=94.57 Aligned_cols=108 Identities=11% Similarity=0.109 Sum_probs=84.0
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhCC------------CcE-EEecCC----------C----------CH---------
Q psy7773 184 TKHRVLMFCQMTQLMTILEDYFIWRD------------FSY-LRLDGT----------T----------KS--------- 221 (1281)
Q Consensus 184 ~~~kvlIFs~~~~~~~~l~~~l~~~g------------~~~-~~~~g~----------~----------~~--------- 221 (1281)
.+.+++|||..+..+..+...|...+ +++ +.++|. + +.
T Consensus 536 ~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~ 615 (1038)
T 2w00_A 536 KGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAA 615 (1038)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHH
Confidence 35689999999999988888887654 555 455653 1 21
Q ss_pred --------------------HHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEEeCCCCCcchhhHHhHhhhh
Q psy7773 222 --------------------EDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHR 281 (1281)
Q Consensus 222 --------------------~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R 281 (1281)
..|..++++|.++..+ +|+++....+|++.+.+ +++++|.|-++..+.||+||+.|
T Consensus 616 I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~---ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR 691 (1038)
T 2w00_A 616 IREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDID---LLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNR 691 (1038)
T ss_dssp HHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSS---EEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCC
T ss_pred HHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCe---EEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCc
Confidence 1488899999986544 47778999999999999 67889999999999999999999
Q ss_pred cCCC-Ce-EEEEEEEe
Q psy7773 282 IGQK-NE-VRVLRLIT 295 (1281)
Q Consensus 282 ~Gq~-~~-V~v~~l~~ 295 (1281)
.+.. ++ ..|+.|+.
T Consensus 692 ~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 692 IYDATKTFGNIVTFRD 707 (1038)
T ss_dssp CCCTTCCSEEEEESSC
T ss_pred CCCCCCCcEEEEEccc
Confidence 9874 43 67776663
No 164
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.40 E-value=0.0006 Score=85.70 Aligned_cols=70 Identities=19% Similarity=0.179 Sum_probs=54.6
Q ss_pred ccCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHH
Q psy7773 542 VNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKW 617 (1281)
Q Consensus 542 ~~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~ 617 (1281)
+...|-+.|.+||..++. ...-.|+..++|+|||.+.+.++.+++.. ..++||++|++.. .+...-+...
T Consensus 186 ~~~~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 186 FNTCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp SSTTCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHHhc
Confidence 345799999999998875 23346889999999999999999988854 2589999998765 6666666554
No 165
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.31 E-value=0.0015 Score=78.35 Aligned_cols=142 Identities=14% Similarity=0.121 Sum_probs=84.9
Q ss_pred CcccHHHHHHHHHHHHhhcCCC-CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCc
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNL-NGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSAN 622 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~-~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~ 622 (1281)
..|-+-|..++..++.....+. ..+|....|+|||..+..++.++..... .++++++|+.....-..+.. +..
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~--~~il~~a~T~~Aa~~l~~~~----~~~ 97 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGE--TGIILAAPTHAAKKILSKLS----GKE 97 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTC--CCEEEEESSHHHHHHHHHHH----SSC
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC--ceEEEecCcHHHHHHHHhhh----ccc
Confidence 4799999999998876544443 6688899999999999888888875432 57999999877643222211 111
Q ss_pred EEEEeCCHHHHHHHHhhh-ccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEEe
Q psy7773 623 VVAYKGSPLARRALQGRM-KNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLL 701 (1281)
Q Consensus 623 ~~~~~g~~~~r~~~~~~~-~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllL 701 (1281)
+..++. .+.... .......+.. ...-....+++|||||+|.+.. .....+...+....++++
T Consensus 98 ~~T~h~------~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~iiiDE~~~~~~---~~~~~l~~~~~~~~~~~~ 160 (459)
T 3upu_A 98 ASTIHS------ILKINPVTYEENVLFEQ--------KEVPDLAKCRVLICDEVSMYDR---KLFKILLSTIPPWCTIIG 160 (459)
T ss_dssp EEEHHH------HHTEEEEECSSCEEEEE--------CSCCCCSSCSEEEESCGGGCCH---HHHHHHHHHSCTTCEEEE
T ss_pred hhhHHH------HhccCcccccccchhcc--------cccccccCCCEEEEECchhCCH---HHHHHHHHhccCCCEEEE
Confidence 111110 000000 0000000000 0011123578999999998742 334455455456778999
Q ss_pred ecCCCCC
Q psy7773 702 TGTPLQN 708 (1281)
Q Consensus 702 TgTPl~n 708 (1281)
.|-|-|.
T Consensus 161 vGD~~Ql 167 (459)
T 3upu_A 161 IGDNKQI 167 (459)
T ss_dssp EECTTSC
T ss_pred ECCHHHc
Confidence 9998873
No 166
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.22 E-value=0.0022 Score=79.99 Aligned_cols=149 Identities=18% Similarity=0.231 Sum_probs=94.2
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCCCCcE
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAPSANV 623 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p~~~~ 623 (1281)
.|-+.|..++..++. +...++..++|+|||.++..++.++... ...++||++|+... .+....+... +..+
T Consensus 180 ~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~--~~~~ 251 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT--GLKV 251 (624)
T ss_dssp CCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHTT--TCCE
T ss_pred CCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhc--CCeE
Confidence 588999999987763 3456788999999999998888877632 34689999998766 4444445443 2222
Q ss_pred EEEeCCHH-----------------------------------------HHHHHH------hhhccCCccEEEechHHHh
Q psy7773 624 VAYKGSPL-----------------------------------------ARRALQ------GRMKNSKFNVLLTTYEFII 656 (1281)
Q Consensus 624 ~~~~g~~~-----------------------------------------~r~~~~------~~~~~~~~~vvItTye~l~ 656 (1281)
+-+.+... ...... ........+||++|...+.
T Consensus 252 ~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~~ 331 (624)
T 2gk6_A 252 VRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAG 331 (624)
T ss_dssp EECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGGG
T ss_pred EeeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhhc
Confidence 22211100 000000 0001235688999876654
Q ss_pred hcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEEeecCCCCC
Q psy7773 657 KDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLTGTPLQN 708 (1281)
Q Consensus 657 ~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllLTgTPl~n 708 (1281)
. ..+....|++||||||..+.... .+..+.....+++|-|=|.|-
T Consensus 332 ~--~~l~~~~fd~viIDEAsQ~~e~~-----~li~l~~~~~~~ilvGD~~QL 376 (624)
T 2gk6_A 332 D--PRLAKMQFRSILIDESTQATEPE-----CMVPVVLGAKQLILVGDHCQL 376 (624)
T ss_dssp C--GGGTTCCCSEEEETTGGGSCHHH-----HHHHHTTTBSEEEEEECTTSC
T ss_pred c--hhhhcCCCCEEEEecccccCcHH-----HHHHHHhcCCeEEEecChhcc
Confidence 2 33556789999999998766443 122222445789999999874
No 167
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.09 E-value=0.0024 Score=78.52 Aligned_cols=132 Identities=21% Similarity=0.142 Sum_probs=82.8
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCc
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSAN 622 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~ 622 (1281)
+..|-+.|..++..++ .+...++....|+|||.++.+++..+... ..++++++|+........+... ..
T Consensus 187 ~~~L~~~Q~~Av~~~~----~~~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl~~ApT~~Aa~~L~e~~~----~~ 255 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLA----GHRLVVLTGGPGTGKSTTTKAVADLAESL---GLEVGLCAPTGKAARRLGEVTG----RT 255 (574)
T ss_dssp TTTCCHHHHHHHHHHT----TCSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHT----SC
T ss_pred cCCCCHHHHHHHHHHH----hCCEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEecCcHHHHHHhHhhhc----cc
Confidence 4578999999998876 34567889999999999888877766532 3589999998877665544321 11
Q ss_pred EEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEEee
Q psy7773 623 VVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLT 702 (1281)
Q Consensus 623 ~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllLT 702 (1281)
...++ . +..... . .+.. ..-....+++|||||||.+... ....+........+++|.
T Consensus 256 a~Tih------~-ll~~~~----~-------~~~~--~~~~~~~~dvlIIDEasml~~~---~~~~Ll~~~~~~~~lilv 312 (574)
T 3e1s_A 256 ASTVH------R-LLGYGP----Q-------GFRH--NHLEPAPYDLLIVDEVSMMGDA---LMLSLLAAVPPGARVLLV 312 (574)
T ss_dssp EEEHH------H-HTTEET----T-------EESC--SSSSCCSCSEEEECCGGGCCHH---HHHHHHTTSCTTCEEEEE
T ss_pred HHHHH------H-HHcCCc----c-------hhhh--hhcccccCCEEEEcCccCCCHH---HHHHHHHhCcCCCEEEEE
Confidence 11110 0 000000 0 0000 1112346899999999998543 233333334667899999
Q ss_pred cCCCCC
Q psy7773 703 GTPLQN 708 (1281)
Q Consensus 703 gTPl~n 708 (1281)
|-|-|.
T Consensus 313 GD~~QL 318 (574)
T 3e1s_A 313 GDTDQL 318 (574)
T ss_dssp ECTTSC
T ss_pred eccccc
Confidence 999884
No 168
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.0032 Score=80.39 Aligned_cols=149 Identities=17% Similarity=0.202 Sum_probs=94.4
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCCCCc
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAPSAN 622 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p~~~ 622 (1281)
..|-+.|..++..++. +...++..++|+|||.++..++.++.... ..++||++|+... .+....+.... ..
T Consensus 359 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~~i~~l~~~~--~~~ILv~a~tn~A~d~l~~rL~~~g--~~ 430 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLSKIH--KDRILVCAPSNVAVDHLAAKLRDLG--LK 430 (802)
T ss_dssp CCCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSHHHHHHHHHHHHHTT--CC
T ss_pred ccCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHHHhCC--CCeEEEEcCcHHHHHHHHHHHHhhC--cc
Confidence 3688999999987753 33467888999999999988888876532 3589999998776 55555565532 22
Q ss_pred EEEEeCCHH----------------------------------------HHHHHH------hhhccCCccEEEechHHHh
Q psy7773 623 VVAYKGSPL----------------------------------------ARRALQ------GRMKNSKFNVLLTTYEFII 656 (1281)
Q Consensus 623 ~~~~~g~~~----------------------------------------~r~~~~------~~~~~~~~~vvItTye~l~ 656 (1281)
++-+.+... ....+. ........+||++|...+.
T Consensus 431 ilR~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~~ 510 (802)
T 2xzl_A 431 VVRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGAG 510 (802)
T ss_dssp EEECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGGG
T ss_pred EEeecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhcC
Confidence 222211000 000000 0011235688999887665
Q ss_pred hcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEEeecCCCCC
Q psy7773 657 KDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLTGTPLQN 708 (1281)
Q Consensus 657 ~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllLTgTPl~n 708 (1281)
. ..+.. .|++||||||..+.... .+..+.....+++|-|=|.|-
T Consensus 511 ~--~~L~~-~fd~viIDEA~q~~e~~-----~li~l~~~~~~lilvGD~~QL 554 (802)
T 2xzl_A 511 D--KRLDT-KFRTVLIDESTQASEPE-----CLIPIVKGAKQVILVGDHQQL 554 (802)
T ss_dssp C--TTCCS-CCSEEEETTGGGSCHHH-----HHHHHTTTBSEEEEEECTTSC
T ss_pred h--HHHhc-cCCEEEEECccccchHH-----HHHHHHhCCCEEEEEeCcccc
Confidence 2 23444 89999999998875432 222233456789999999873
No 169
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.02 E-value=0.0035 Score=79.91 Aligned_cols=150 Identities=18% Similarity=0.220 Sum_probs=93.5
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCCCCc
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAPSAN 622 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p~~~ 622 (1281)
..|-+.|..++..++. +...++..++|+|||.++..++.++... ...++||++|+... .+....+... +..
T Consensus 355 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~--g~~ 426 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT--GLK 426 (800)
T ss_dssp CCCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHHHHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTT--TCC
T ss_pred cCCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHh--Ccc
Confidence 3688999999987763 3346888999999999998888887632 34689999998766 4444444432 222
Q ss_pred EEEEeCCH------------------------HHHHHH-----------------H------hhhccCCccEEEechHHH
Q psy7773 623 VVAYKGSP------------------------LARRAL-----------------Q------GRMKNSKFNVLLTTYEFI 655 (1281)
Q Consensus 623 ~~~~~g~~------------------------~~r~~~-----------------~------~~~~~~~~~vvItTye~l 655 (1281)
++-+.+.. ..+... . ........+||++|...+
T Consensus 427 vvRlg~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~ 506 (800)
T 2wjy_A 427 VVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA 506 (800)
T ss_dssp EEECCCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETGGG
T ss_pred eEeecccchhhhcchhhhhhHHHHHHcCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchhhh
Confidence 22221110 000000 0 000112457888887765
Q ss_pred hhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEEeecCCCCC
Q psy7773 656 IKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLTGTPLQN 708 (1281)
Q Consensus 656 ~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllLTgTPl~n 708 (1281)
.. ..+....|++||||||..+.... .+..+.....+++|-|=|.|-
T Consensus 507 ~~--~~l~~~~fd~viIDEAsQ~~e~~-----~li~l~~~~~~~ilvGD~~QL 552 (800)
T 2wjy_A 507 GD--PRLAKMQFRSILIDESTQATEPE-----CMVPVVLGAKQLILVGDHCQL 552 (800)
T ss_dssp GC--TTTTTCCCSEEEETTGGGSCHHH-----HHHHHTTTBSEEEEEECTTSC
T ss_pred CC--hhhhcCCCCEEEEECCCCCCcHH-----HHHHHHhcCCeEEEecccccC
Confidence 43 23556689999999997765432 122222456789999999873
No 170
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.51 E-value=0.0098 Score=73.79 Aligned_cols=145 Identities=14% Similarity=0.147 Sum_probs=78.8
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhc-CCCCCEEEEeCCccHHHHH-HHHHHHCCCCcE-
Q psy7773 547 KEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKK-KNLGPYLVIVPLSTLSNWV-LEFEKWAPSANV- 623 (1281)
Q Consensus 547 ~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~-~~~~~~LIV~P~s~l~~W~-~E~~~~~p~~~~- 623 (1281)
-+.|..++.-++ .+...++...+|+|||.++..++..+.... ....++++++|+....... ..+..+...+.+
T Consensus 151 ~~~Q~~Ai~~~l----~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~ 226 (608)
T 1w36_D 151 INWQKVAAAVAL----TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 226 (608)
T ss_dssp CCHHHHHHHHHH----TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCC
T ss_pred CHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCC
Confidence 578999998766 355678899999999988877777765432 2234899999988774433 333322110000
Q ss_pred -EEEeCCHHHHHHHHhhhccCCcc-EEEechHH--HhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEE
Q psy7773 624 -VAYKGSPLARRALQGRMKNSKFN-VLLTTYEF--IIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRV 699 (1281)
Q Consensus 624 -~~~~g~~~~r~~~~~~~~~~~~~-vvItTye~--l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rl 699 (1281)
....+.+ ......+ ++-.+... +... ......+++||||||+.+.. ..+...+..+ +...++
T Consensus 227 ~~~~~~~~---------~~~~Tih~ll~~~~~~~~~~~~--~~~~l~~d~lIIDEAsml~~--~~~~~Ll~~l-~~~~~l 292 (608)
T 1w36_D 227 DEQKKRIP---------EDASTLHRLLGAQPGSQRLRHH--AGNPLHLDVLVVDEASMIDL--PMMSRLIDAL-PDHARV 292 (608)
T ss_dssp SCCCCSCS---------CCCBTTTSCC-----------C--TTSCCSCSEEEECSGGGCBH--HHHHHHHHTC-CTTCEE
T ss_pred HHHHhccc---------hhhhhhHhhhccCCCchHHHhc--cCCCCCCCEEEEechhhCCH--HHHHHHHHhC-CCCCEE
Confidence 0000000 0000000 00001110 1111 11223789999999996642 2334444443 667899
Q ss_pred EeecCCCCCC
Q psy7773 700 LLTGTPLQNK 709 (1281)
Q Consensus 700 lLTgTPl~n~ 709 (1281)
+|.|-|.|-.
T Consensus 293 iLvGD~~QL~ 302 (608)
T 1w36_D 293 IFLGDRDQLA 302 (608)
T ss_dssp EEEECTTSGG
T ss_pred EEEcchhhcC
Confidence 9999998753
No 171
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.47 E-value=0.0063 Score=63.09 Aligned_cols=106 Identities=16% Similarity=0.190 Sum_probs=56.6
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCcEEEEeCCHHHHHHHHhhhccCCcc
Q psy7773 567 GILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSANVVAYKGSPLARRALQGRMKNSKFN 646 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~ 646 (1281)
.++.-+||+|||..++.++..+... ..+++++.|.. .+ ++. ...+....|. ....
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~---g~~v~~~~~~~--d~------r~~-~~~i~s~~g~-------------~~~~ 60 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLG---KKKVAVFKPKI--DS------RYH-STMIVSHSGN-------------GVEA 60 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT---TCEEEEEEEC-------------C-CCEECC-----------------CEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeecc--cc------ccC-cccEEecCCC-------------ceee
Confidence 4678889999999988877666532 24788888873 11 111 1111110000 0011
Q ss_pred EEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEEeecC
Q psy7773 647 VLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLTGT 704 (1281)
Q Consensus 647 vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllLTgT 704 (1281)
+.+.+...+... +. -.+++|||||+|.+... ....+..+......+++||+
T Consensus 61 ~~~~~~~~~~~~---~~-~~~dvviIDE~Q~~~~~---~~~~l~~l~~~~~~Vi~~Gl 111 (184)
T 2orw_A 61 HVIERPEEMRKY---IE-EDTRGVFIDEVQFFNPS---LFEVVKDLLDRGIDVFCAGL 111 (184)
T ss_dssp EEESSGGGGGGG---CC-TTEEEEEECCGGGSCTT---HHHHHHHHHHTTCEEEEEEE
T ss_pred EEECCHHHHHHH---hc-CCCCEEEEECcccCCHH---HHHHHHHHHHCCCCEEEEee
Confidence 222332222211 11 25899999999998432 34445444455677888887
No 172
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.00 E-value=0.02 Score=71.85 Aligned_cols=68 Identities=13% Similarity=0.146 Sum_probs=49.6
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC-CCCCEEEEeCCccH-HHHHHHHHHH
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKK-NLGPYLVIVPLSTL-SNWVLEFEKW 617 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~-~~~~~LIV~P~s~l-~~W~~E~~~~ 617 (1281)
..|-+.|.++|. ......++-...|+|||.+.+.-+.+++...+ ....+|+|+++... .+....+...
T Consensus 8 ~~Ln~~Q~~av~------~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVA------APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHT------CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHh------CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 368999999985 12344566677999999999999999986533 34579999997665 4444555554
No 173
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.57 E-value=0.027 Score=60.02 Aligned_cols=113 Identities=20% Similarity=0.133 Sum_probs=61.2
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCcEEEEeCCHHHHHHHHhhhcc
Q psy7773 563 NNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSANVVAYKGSPLARRALQGRMKN 642 (1281)
Q Consensus 563 ~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~ 642 (1281)
.+.-.++.-+||+|||..++.++..+... ..+++++.|.---. .+ ...... .|.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~---g~kVli~~~~~d~r---~~-~~i~sr------lG~------------- 64 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA---DVKYLVFKPKIDTR---SI-RNIQSR------TGT------------- 64 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEEECCCGG---GC-SSCCCC------CCC-------------
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEEeccCch---HH-HHHHHh------cCC-------------
Confidence 33334678999999999998888776533 24788887754110 00 000000 010
Q ss_pred CCccEEEechHHHhhc-ccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEEeecC
Q psy7773 643 SKFNVLLTTYEFIIKD-KSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLTGT 704 (1281)
Q Consensus 643 ~~~~vvItTye~l~~~-~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllLTgT 704 (1281)
....+.+.+...+... ...+....+++|||||+|.+... ....+..+......++|+|-
T Consensus 65 ~~~~~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~l~~~---~ve~l~~L~~~gi~Vil~Gl 124 (223)
T 2b8t_A 65 SLPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQFFDDR---ICEVANILAENGFVVIISGL 124 (223)
T ss_dssp SSCCEEESSTHHHHHHHHSTTSCTTCCEEEECSGGGSCTH---HHHHHHHHHHTTCEEEEECC
T ss_pred CccccccCCHHHHHHHHHHHhhCCCCCEEEEecCccCcHH---HHHHHHHHHhCCCeEEEEec
Confidence 0011223333333221 12223346899999999987643 23344443344667889886
No 174
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.52 E-value=0.044 Score=57.51 Aligned_cols=35 Identities=17% Similarity=0.110 Sum_probs=26.5
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc
Q psy7773 568 ILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS 605 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s 605 (1281)
++.-+||+|||..++..+..+... ..++||+.|.-
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~~---g~kVli~k~~~ 66 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQFA---KQHAIVFKPCI 66 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEECC-
T ss_pred EEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEecc
Confidence 468899999999988887666533 35889998864
No 175
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.40 E-value=0.13 Score=59.25 Aligned_cols=155 Identities=12% Similarity=0.134 Sum_probs=87.2
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHH---CC
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKW---AP 619 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~---~p 619 (1281)
..|.|||...+..+.. ....++.-.-+.|||..+.+++.+.... .....+++++|..-. ..+...+..+ .|
T Consensus 162 ~~L~p~Qk~il~~l~~----~R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSS----KRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCCHHHHHHHHHHHH----SSEEEEEECSSSCHHHHHHHHHHHHHHS-SSSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhhcc----CcEEEEEEcCcCChhHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 4799999998876632 2336777789999999888777765433 233478999996543 2233455444 33
Q ss_pred C-CcE-EEEeCCHHHHHHHHhhhcc-CCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhc--
Q psy7773 620 S-ANV-VAYKGSPLARRALQGRMKN-SKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYN-- 694 (1281)
Q Consensus 620 ~-~~~-~~~~g~~~~r~~~~~~~~~-~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~-- 694 (1281)
. +.. +..... ..+.. .+..+.+.+ .....+.....+++|+||+|.+++.. .++.++.....
T Consensus 237 ~ll~~~~~~~~~--------~~I~f~nGs~i~~ls-----a~~~slrG~~~~~viiDE~a~~~~~~-el~~al~~~ls~~ 302 (385)
T 2o0j_A 237 DFLQPGIVEWNK--------GSIELDNGSSIGAYA-----SSPDAVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISSG 302 (385)
T ss_dssp TTTSCCEEEECS--------SEEEETTSCEEEEEE-----CSHHHHHTSCCSEEEEESGGGSTTHH-HHHHHHHHHHHST
T ss_pred HhhhhhhccCCc--------cEEEeCCCCEEEEEE-----CCCCCccCCCCCEEEechhhhcCCCH-HHHHHHHHHhhcC
Confidence 2 110 000000 00000 111121111 13344566678999999999998732 33444433222
Q ss_pred cCcEEEeecCCCCCChhHHHHHHhh
Q psy7773 695 SSHRVLLTGTPLQNKLPELWALLNF 719 (1281)
Q Consensus 695 ~~~rllLTgTPl~n~~~el~~ll~f 719 (1281)
...++++++||-..+ -++.+...
T Consensus 303 ~~~kiiiiSTP~g~n--~fy~l~~~ 325 (385)
T 2o0j_A 303 RRSKIIITTTPNGLN--HFYDIWTA 325 (385)
T ss_dssp TCCEEEEEECCCSSS--HHHHHHHH
T ss_pred CCCcEEEEeCCCCch--hHHHHHHH
Confidence 346888889997553 45555443
No 176
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.26 E-value=0.055 Score=56.13 Aligned_cols=122 Identities=20% Similarity=0.251 Sum_probs=63.2
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCcEEEEeCCHHHHHHHHhhhccCCcc
Q psy7773 567 GILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSANVVAYKGSPLARRALQGRMKNSKFN 646 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~ 646 (1281)
.++.-+||+|||..++.++..+.. ...+++|+.|.- |.+ .. ...+....|. .-..
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~---~g~kV~v~k~~~----d~r----~~-~~~i~s~~g~-------------~~~a 65 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKI---AKQKIQVFKPEI----DNR----YS-KEDVVSHMGE-------------KEQA 65 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEEC----------------CEEECTTSC-------------EEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH---CCCEEEEEEecc----Ccc----ch-HHHHHhhcCC-------------ceee
Confidence 356788999999988887776642 235889998862 111 11 1111111110 0011
Q ss_pred EEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEEeecC--CCC----CChhHHHHHHhhh
Q psy7773 647 VLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLTGT--PLQ----NKLPELWALLNFL 720 (1281)
Q Consensus 647 vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllLTgT--Pl~----n~~~el~~ll~fl 720 (1281)
+.+.+...+... +. -.+++|||||||.+.... ...+..+......++++|- .++ +...+|..+.+.+
T Consensus 66 ~~~~~~~~i~~~---~~-~~~dvViIDEaqfl~~~~---v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V 138 (191)
T 1xx6_A 66 VAIKNSREILKY---FE-EDTEVIAIDEVQFFDDEI---VEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFV 138 (191)
T ss_dssp EEESSSTHHHHH---CC-TTCSEEEECSGGGSCTHH---HHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEE
T ss_pred EeeCCHHHHHHH---Hh-ccCCEEEEECCCCCCHHH---HHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccE
Confidence 222222212111 11 148999999999975332 3445444344557777874 333 3445555555444
No 177
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=95.23 E-value=0.45 Score=59.64 Aligned_cols=123 Identities=16% Similarity=0.166 Sum_probs=94.9
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHH-----------------------------------------
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFI----------------------------------------- 206 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~----------------------------------------- 206 (1281)
..|+.++.+-+..+...|..|||+|.+....+.|..+|.
T Consensus 426 ~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (997)
T 2ipc_A 426 KGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQL 505 (997)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTC
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccc
Confidence 578888888888888889999999999999999988888
Q ss_pred -----------------------------------hCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccC
Q psy7773 207 -----------------------------------WRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLG 251 (1281)
Q Consensus 207 -----------------------------------~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~G 251 (1281)
..||++-.++...- ++-..+|..=-. .+ .+.++|..+|.|
T Consensus 506 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~H~VLNAK~h-e~EAeIIAqAG~-~G---aVTIATNMAGRG 580 (997)
T 2ipc_A 506 KDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAKHH-AREAEIVAQAGR-SK---TVTIATNMAGRG 580 (997)
T ss_dssp SHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCCCCCEECSSSH-HHHHHHHHTTTS-TT---CEEEECSSTTTT
T ss_pred cccccccccccccccccccccccccchhhhhhHHHHcCCCeeeccccch-HHHHHHHHhcCC-CC---eEEEEecccCCC
Confidence 67899888887654 333455554432 22 367889999999
Q ss_pred CCCC-CCC------------------------------------------------------------------------
Q psy7773 252 LNLQ-AAD------------------------------------------------------------------------ 258 (1281)
Q Consensus 252 lnL~-~a~------------------------------------------------------------------------ 258 (1281)
-++. +.+
T Consensus 581 TDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GG 660 (997)
T 2ipc_A 581 TDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGG 660 (997)
T ss_dssp SCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred cCeecCCCHHHHHHHHHHhhcccccccccccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCC
Confidence 9976 311
Q ss_pred -EEEEeCCCCCcchhhHHhHhhhhcCCCCeEEEEEEEec
Q psy7773 259 -TVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITV 296 (1281)
Q Consensus 259 -~vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~v~~l~~~ 296 (1281)
|||--..+=|.-.+.|.-||++|.|..-.-. |++...
T Consensus 661 LhVIGTeRhESrRIDnQLRGRaGRQGDPGsSr-F~LSLe 698 (997)
T 2ipc_A 661 LFIIGTERHESRRIDNQLRGRAGRQGDPGGSR-FYVSFD 698 (997)
T ss_dssp CCEEESSCCSSHHHHHHHHHTSSCSSCCCEEE-EEEESS
T ss_pred eEEEeccCCchHHHHHHHhcccccCCCCCCeE-EEEECC
Confidence 7888899999999999999999999965443 444433
No 178
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=95.20 E-value=0.04 Score=67.37 Aligned_cols=91 Identities=8% Similarity=0.178 Sum_probs=54.4
Q ss_pred HHHHHHHHHhh-hCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEE-Eeccccc
Q psy7773 172 ELLDRILPKFK-ETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFL-LSTRAGG 249 (1281)
Q Consensus 172 ~~L~~ll~~~~-~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll-~st~~~~ 249 (1281)
..+...|..+. ..+..+|||+.+...++.+...|.. ++ +.+.|.. ..|..+++.|..+. . |++ +.+...+
T Consensus 370 ~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~--il~~V~~~~~~ 441 (540)
T 2vl7_A 370 PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-Y--LVMLVMRAKES 441 (540)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-C--EEEEEC-----
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-e--EEEEEecCcee
Confidence 34444454443 4567899999999999988887754 33 3456654 36889999998732 2 333 3789999
Q ss_pred cCCCCCC----CCEEEEeCCCCCcc
Q psy7773 250 LGLNLQA----ADTVIIFDSDWNPH 270 (1281)
Q Consensus 250 ~GlnL~~----a~~vi~~d~~wnp~ 270 (1281)
+|||+.+ +..||++.+|+-+.
T Consensus 442 EGiD~~~~~~~~~~Vii~~lPf~~~ 466 (540)
T 2vl7_A 442 EGVEFREKENLFESLVLAGLPYPNV 466 (540)
T ss_dssp ----------CEEEEEEESCCCCCT
T ss_pred cceecCCCcccccEEEEECCCCCCC
Confidence 9999996 78899999997544
No 179
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=94.79 E-value=0.23 Score=61.27 Aligned_cols=147 Identities=12% Similarity=0.121 Sum_probs=83.6
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHC---
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWA--- 618 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~--- 618 (1281)
...|.|||...+..+. .....++.-.-|.|||..+.+++.+.+... ....++++.|..-. ..+...+..+.
T Consensus 161 ~~~l~p~Q~~i~~~l~----~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 161 KVQLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp BCCCCHHHHHHHHHHH----HCSEEEEEECSSSCHHHHHHHHHHHHHHTS-SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCcCCHHHHHHHHhhc----cccEEEEEEcCccChHHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 3479999999877652 233467777899999998877776665433 23478999996443 33334555543
Q ss_pred CC-CcE-EEEeCCHHHHHHHHhhhcc-CCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhc-
Q psy7773 619 PS-ANV-VAYKGSPLARRALQGRMKN-SKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYN- 694 (1281)
Q Consensus 619 p~-~~~-~~~~g~~~~r~~~~~~~~~-~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~- 694 (1281)
|. +.. ...... ..+.. .+..+... ..+...+.....+++|+||+|.+++.. .++.++.....
T Consensus 236 p~~~~~~~~~~~~--------~~i~~~nGs~i~~~-----s~~~~~lrG~~~~~~iiDE~~~~~~~~-~l~~~~~~~l~~ 301 (592)
T 3cpe_A 236 PDFLQPGIVEWNK--------GSIELDNGSSIGAY-----ASSPDAVRGNSFAMIYIEDCAFIPNFH-DSWLAIQPVISS 301 (592)
T ss_dssp CTTTSCCEEEECS--------SEEEETTSCEEEEE-----ECCHHHHHHSCCSEEEEETGGGCTTHH-HHHHHHHHHHSS
T ss_pred hHhhccccccCCc--------cEEEecCCCEEEEE-----eCCCCCccCCCcceEEEehhccCCchh-HHHHHHHHHhcc
Confidence 32 110 000000 00000 11111111 122334455578999999999998743 44455543323
Q ss_pred -cCcEEEeecCCCCC
Q psy7773 695 -SSHRVLLTGTPLQN 708 (1281)
Q Consensus 695 -~~~rllLTgTPl~n 708 (1281)
...++++++||-..
T Consensus 302 ~~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 302 GRRSKIIITTTPNGL 316 (592)
T ss_dssp SSCCEEEEEECCCTT
T ss_pred CCCceEEEEeCCCCc
Confidence 24688899999654
No 180
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.68 E-value=0.053 Score=63.40 Aligned_cols=108 Identities=16% Similarity=0.109 Sum_probs=68.5
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCCCCcEEEEeCCHHHHHHHHhhhccCCc
Q psy7773 567 GILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAPSANVVAYKGSPLARRALQGRMKNSKF 645 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~ 645 (1281)
.++....|+|||.....++. ..+.||++|..-+ ..|.+.+.+.. . ...-
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~--------~~~~lVlTpT~~aa~~l~~kl~~~~----------~------------~~~~ 213 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVN--------FEEDLILVPGRQAAEMIRRRANASG----------I------------IVAT 213 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCC--------TTTCEEEESCHHHHHHHHHHHTTTS----------C------------CCCC
T ss_pred EEEEcCCCCCHHHHHHHHhc--------cCCeEEEeCCHHHHHHHHHHhhhcC----------c------------cccc
Confidence 35778899999987655442 1578999998665 77887774321 0 0111
Q ss_pred cEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEEeecCCCCC
Q psy7773 646 NVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLTGTPLQN 708 (1281)
Q Consensus 646 ~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllLTgTPl~n 708 (1281)
+.-+.|++.+............++||||||..+-. ..+. .+..+.+. .+++|.|=|-|-
T Consensus 214 ~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~~~--~~l~-~l~~~~~~-~~vilvGD~~Ql 272 (446)
T 3vkw_A 214 KDNVRTVDSFLMNYGKGARCQFKRLFIDEGLMLHT--GCVN-FLVEMSLC-DIAYVYGDTQQI 272 (446)
T ss_dssp TTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGSCH--HHHH-HHHHHTTC-SEEEEEECTTSC
T ss_pred cceEEEeHHhhcCCCCCCCCcCCEEEEeCcccCCH--HHHH-HHHHhCCC-CEEEEecCcccc
Confidence 23367777765544443344589999999986632 2222 33333234 899999999873
No 181
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.59 E-value=0.22 Score=56.35 Aligned_cols=100 Identities=12% Similarity=0.070 Sum_probs=58.4
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCcEEEEeCCHHHHHHHHhhhccC
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSANVVAYKGSPLARRALQGRMKNS 643 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~ 643 (1281)
+.+.+|..++|+|||..+-+++..+... ..+++.+........+...+... .
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~-----------~-------------- 88 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSADDFAQAMVEHLKKG-----------T-------------- 88 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEHHHHHHHHHHHHHHT-----------C--------------
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEHHHHHHHHHHHHHcC-----------c--------------
Confidence 3467889999999999988887776533 24665554433333333333210 0
Q ss_pred CccEEEechHHHhhcccccccCceeEEEEeCCcccccc---chHHHHHHHhhhccCcEEEeecC
Q psy7773 644 KFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNH---HCKLTQTLNTFYNSSHRVLLTGT 704 (1281)
Q Consensus 644 ~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~---~s~~~~~l~~~~~~~~rllLTgT 704 (1281)
...+.. .+ ...++|+|||+|.+... ...+...+...+....++++|+|
T Consensus 89 --------~~~~~~---~~--~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 89 --------INEFRN---MY--KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp --------HHHHHH---HH--HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred --------HHHHHH---Hh--cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 000100 01 12579999999998752 23444555554455667888887
No 182
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.52 E-value=0.12 Score=54.70 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=26.2
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc
Q psy7773 568 ILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS 605 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s 605 (1281)
++.-+||+|||..++..+.... ....+++|+-|.-
T Consensus 23 v~~G~MgsGKTT~lL~~~~r~~---~~g~kvli~kp~~ 57 (234)
T 2orv_A 23 VILGPMFSGKSTELMRRVRRFQ---IAQYKCLVIKYAK 57 (234)
T ss_dssp EEECCTTSCHHHHHHHHHHHHH---TTTCCEEEEEETT
T ss_pred EEECCCCCcHHHHHHHHHHHHH---HCCCeEEEEeecC
Confidence 5678899999988887766553 3446889988853
No 183
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.01 E-value=0.36 Score=49.20 Aligned_cols=45 Identities=22% Similarity=0.201 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHHHhh-----cCCCCeEEecCCCCCHHHHHHHHHHHHHHh
Q psy7773 547 KEYQIKGLEWMVSLY-----NNNLNGILADEMGLGKTVQTIALLTYLMEK 591 (1281)
Q Consensus 547 ~~yQ~~gv~~l~~~~-----~~~~~gILademGlGKTi~ai~ll~~l~~~ 591 (1281)
.+.|..++..+.... ..+.+.+|.-++|+|||..+-+++..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~ 65 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEK 65 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 357888887776544 234556788999999999988887776533
No 184
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.95 E-value=0.26 Score=56.13 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=35.8
Q ss_pred ccHHHHHHHHHHHHhhcCCCC---eEEecCCCCCHHHHHHHHHHHHH
Q psy7773 546 LKEYQIKGLEWMVSLYNNNLN---GILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 546 L~~yQ~~gv~~l~~~~~~~~~---gILademGlGKTi~ai~ll~~l~ 589 (1281)
++|+|.+.+..+.....++.. -++..+.|+|||..+..++..+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 579999998888777655442 47899999999999999888875
No 185
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=93.56 E-value=0.2 Score=63.08 Aligned_cols=68 Identities=12% Similarity=0.028 Sum_probs=49.7
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC-CCCCEEEEeCCccH-HHHHHHHHHHC
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKK-NLGPYLVIVPLSTL-SNWVLEFEKWA 618 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~-~~~~~LIV~P~s~l-~~W~~E~~~~~ 618 (1281)
.|-|.|.++|.. .....++....|+|||.+.+.-+.+++...+ ....+|+|+.+... ......+....
T Consensus 2 ~L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 478999998853 2345567788999999999998999886633 44679999987655 44555565554
No 186
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.33 E-value=0.31 Score=50.95 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=24.7
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc
Q psy7773 568 ILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS 605 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s 605 (1281)
++.-+||+|||...+..+..+... ..+++|+.|.-
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~~~---g~kvli~kp~~ 66 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGIYA---KQKVVVFKPAI 66 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEEC-
T ss_pred EEECCCCCCHHHHHHHHHHHHHHc---CCceEEEEecc
Confidence 678889999998777766554322 25788888854
No 187
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.97 E-value=0.13 Score=57.83 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=26.9
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHHHhcCC-CCCEEEEeCC
Q psy7773 566 NGILADEMGLGKTVQTIALLTYLMEKKKN-LGPYLVIVPL 604 (1281)
Q Consensus 566 ~gILademGlGKTi~ai~ll~~l~~~~~~-~~~~LIV~P~ 604 (1281)
+.+|..++|+|||..+-+++..+...... .++++.+.+.
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD 108 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence 46899999999999998888777543222 2355555443
No 188
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.44 E-value=0.63 Score=55.03 Aligned_cols=103 Identities=15% Similarity=0.169 Sum_probs=57.5
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCcEEEEeCCHHHHHHHHhhhccC
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSANVVAYKGSPLARRALQGRMKNS 643 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~ 643 (1281)
..+.+|..++|+|||..+-++...+.... ...+++.+........+...+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~-~~~~v~~v~~~~~~~~~~~~~~~~-------------------------- 182 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE-PDLRVMYITSEKFLNDLVDSMKEG-------------------------- 182 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHC-CSSCEEEEEHHHHHHHHHHHHHTT--------------------------
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC-CCCeEEEeeHHHHHHHHHHHHHcc--------------------------
Confidence 34568999999999998888777765432 223455444333323232222110
Q ss_pred CccEEEechHHHhhcccccccCceeEEEEeCCcccccc---chHHHHHHHhhhccCcEEEeecC
Q psy7773 644 KFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNH---HCKLTQTLNTFYNSSHRVLLTGT 704 (1281)
Q Consensus 644 ~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~---~s~~~~~l~~~~~~~~rllLTgT 704 (1281)
....+.. .+. ...++|||||+|++... ...+...+..++.....+++|++
T Consensus 183 -------~~~~~~~---~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~ 235 (440)
T 2z4s_A 183 -------KLNEFRE---KYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSD 235 (440)
T ss_dssp -------CHHHHHH---HHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred -------cHHHHHH---Hhc-CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 0001110 000 14679999999999753 33455556555455566777665
No 189
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.21 E-value=1 Score=46.98 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=19.9
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHH
Q psy7773 566 NGILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 566 ~gILademGlGKTi~ai~ll~~l~ 589 (1281)
+.+|..+.|+|||..+-.++..+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 478899999999998887776654
No 190
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.06 E-value=0.55 Score=50.02 Aligned_cols=27 Identities=15% Similarity=-0.120 Sum_probs=21.7
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHH
Q psy7773 563 NNLNGILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 563 ~~~~gILademGlGKTi~ai~ll~~l~ 589 (1281)
.+.+.+|..+.|+|||..+-+++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 355668899999999999888777664
No 191
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.94 E-value=0.6 Score=48.53 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=24.8
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEE
Q psy7773 565 LNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVI 601 (1281)
Q Consensus 565 ~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV 601 (1281)
.+.+|.-++|+|||..+.+++..+... ..+++++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~---~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR---NVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEE
Confidence 567889999999999988887776522 2355544
No 192
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.90 E-value=0.84 Score=51.43 Aligned_cols=41 Identities=20% Similarity=0.373 Sum_probs=26.4
Q ss_pred ceeEEEEeCCcccc-cc-chHHHHHHHhhhccCcEEEeecCCCC
Q psy7773 666 QWKCMIIDEGHRMK-NH-HCKLTQTLNTFYNSSHRVLLTGTPLQ 707 (1281)
Q Consensus 666 ~w~~vIvDEaHr~k-n~-~s~~~~~l~~~~~~~~rllLTgTPl~ 707 (1281)
...+|||||+|.+. .. ...+...+... ....++++|+++..
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~-~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAY-SSNCSIIITANNID 147 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHH-GGGCEEEEEESSGG
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhC-CCCcEEEEEeCCcc
Confidence 57899999999996 32 22333444432 45667888877654
No 193
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=91.46 E-value=0.43 Score=49.17 Aligned_cols=34 Identities=18% Similarity=0.091 Sum_probs=24.5
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Q psy7773 568 ILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL 604 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~ 604 (1281)
++.-+||+|||...+-.+...... ..+++++.|.
T Consensus 24 fiyG~MgsGKTt~Ll~~i~n~~~~---~~kvl~~kp~ 57 (195)
T 1w4r_A 24 VILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYA 57 (195)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEccc
Confidence 568899999997666665555433 2578888886
No 194
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.30 E-value=1.3 Score=44.90 Aligned_cols=27 Identities=30% Similarity=0.390 Sum_probs=21.8
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHH
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l~~ 590 (1281)
+.+.+|..+.|+|||..+-+++..+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 345788999999999998888777653
No 195
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=91.00 E-value=0.65 Score=51.90 Aligned_cols=38 Identities=13% Similarity=0.051 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhhcCCC--CeEEecCCCCCHHHHHHHHHHH
Q psy7773 550 QIKGLEWMVSLYNNNL--NGILADEMGLGKTVQTIALLTY 587 (1281)
Q Consensus 550 Q~~gv~~l~~~~~~~~--~gILademGlGKTi~ai~ll~~ 587 (1281)
|.+.+..+.....++. .-|+..+.|+|||-.+.+++..
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEY 41 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3344444444443333 3578999999999888877653
No 196
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.77 E-value=0.26 Score=48.45 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=20.2
Q ss_pred hcCCCCeEEecCCCCCHHHHHHHHH
Q psy7773 561 YNNNLNGILADEMGLGKTVQTIALL 585 (1281)
Q Consensus 561 ~~~~~~gILademGlGKTi~ai~ll 585 (1281)
...+.+.+|.-++|+|||..|-++.
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHHHHHH
Confidence 3566788999999999998886654
No 197
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.67 E-value=0.49 Score=53.96 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=20.9
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHH
Q psy7773 565 LNGILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 565 ~~gILademGlGKTi~ai~ll~~l~ 589 (1281)
.+.+|..+.|+|||..+-+++..+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3478899999999999888877764
No 198
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.53 E-value=0.11 Score=50.95 Aligned_cols=23 Identities=13% Similarity=0.001 Sum_probs=18.4
Q ss_pred cCCCCeEEecCCCCCHHHHHHHH
Q psy7773 562 NNNLNGILADEMGLGKTVQTIAL 584 (1281)
Q Consensus 562 ~~~~~gILademGlGKTi~ai~l 584 (1281)
..+.+.+|.-++|+|||..|-++
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGG
T ss_pred CCCCcEEEECCCCccHHHHHHHH
Confidence 45667899999999999877554
No 199
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=90.04 E-value=0.65 Score=47.07 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=21.0
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHH
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l~ 589 (1281)
..+.+|.-++|+|||..+-+++..+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 44568899999999999888877664
No 200
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.95 E-value=0.89 Score=52.46 Aligned_cols=45 Identities=18% Similarity=0.155 Sum_probs=33.8
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHH
Q psy7773 563 NNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLE 613 (1281)
Q Consensus 563 ~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E 613 (1281)
...|.+|..++|+|||+.|-+++..+- .+++.|....++..|.-+
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~------~~f~~v~~s~l~sk~vGe 225 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTD------CKFIRVSGAELVQKYIGE 225 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHT------CEEEEEEGGGGSCSSTTH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhC------CCceEEEhHHhhccccch
Confidence 355778999999999999988876642 477878777777666433
No 201
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.73 E-value=1.8 Score=45.65 Aligned_cols=43 Identities=23% Similarity=0.141 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHH
Q psy7773 547 KEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 547 ~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~ 589 (1281)
++..+..+...+..-..+...+|.-+.|+|||..+-.++..+.
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 28 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4445555554443222222457899999999988877766553
No 202
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=89.66 E-value=0.4 Score=52.93 Aligned_cols=37 Identities=22% Similarity=0.165 Sum_probs=25.2
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc
Q psy7773 563 NNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS 605 (1281)
Q Consensus 563 ~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s 605 (1281)
.+.+.+|..++|+|||..+-+++..+ ..+++.+....
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~------~~~~~~v~~~~ 86 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATET------NATFIRVVGSE 86 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHT------TCEEEEEEGGG
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEehHH
Confidence 45567889999999998887765543 23555555433
No 203
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=89.62 E-value=0.69 Score=53.29 Aligned_cols=44 Identities=23% Similarity=0.254 Sum_probs=28.6
Q ss_pred cHHHHHHHHHHHHhh---cCCCCeEEecCCCCCHHHHHHHHHHHHHH
Q psy7773 547 KEYQIKGLEWMVSLY---NNNLNGILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 547 ~~yQ~~gv~~l~~~~---~~~~~gILademGlGKTi~ai~ll~~l~~ 590 (1281)
++.++..+..++... ..+.+.+|..+.|+|||..+-.++..+..
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 444555444333222 34456788999999999998888776643
No 204
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=89.45 E-value=0.92 Score=56.09 Aligned_cols=113 Identities=12% Similarity=0.134 Sum_probs=67.0
Q ss_pred HHHHHHHHHhh-hCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEe-ccccc
Q psy7773 172 ELLDRILPKFK-ETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLS-TRAGG 249 (1281)
Q Consensus 172 ~~L~~ll~~~~-~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~s-t~~~~ 249 (1281)
..+.+.|..+. ..+..+|||..+-..++.+...|. .+... ..-+++...|..+++.|. +.+. |+++. ....+
T Consensus 434 ~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~~~~--vL~~v~~gsf~ 507 (620)
T 4a15_A 434 DRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-RDHG--TIFAVSGGRLS 507 (620)
T ss_dssp HHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-TSCC--EEEEETTSCC-
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-cCCc--EEEEEecCcee
Confidence 33444444432 345568888888888888877776 23333 434445568999999998 4443 44333 35899
Q ss_pred cCCCCC--CCCEEEEeCCCCCcc-----------------------------hhhHHhHhhhhcCCCCeEEE
Q psy7773 250 LGLNLQ--AADTVIIFDSDWNPH-----------------------------QDLQAQDRAHRIGQKNEVRV 290 (1281)
Q Consensus 250 ~GlnL~--~a~~vi~~d~~wnp~-----------------------------~~~Qa~gR~~R~Gq~~~V~v 290 (1281)
+|||+. .+..||+.-+|+-+. ...|++||+.|--+.+.|.+
T Consensus 508 EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~ 579 (620)
T 4a15_A 508 EGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACV 579 (620)
T ss_dssp -------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEE
T ss_pred ccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEE
Confidence 999999 567899988887421 12488999888766555443
No 205
>2v0f_A Chromodomain-helicase-DNA-binding protein 7; nucleotide-binding, chromatin regulator, charge syndrome, phosphorylation, disease mutation; NMR {Homo sapiens} SCOP: d.76.2.1
Probab=89.19 E-value=0.22 Score=43.29 Aligned_cols=48 Identities=29% Similarity=0.560 Sum_probs=43.4
Q ss_pred cccccccccccceeecccccccCCCCCCCchhhHhhhhhcCCCCcccc
Q psy7773 433 LDESSQLEDLRITVKETNSDNKLRGEDAPPAKQIKEWLASHPGWEVVM 480 (1281)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1281)
+|.++...|+.|.+.+..+|..|.|.++|....|..|+..+|.|+++.
T Consensus 8 lD~~sL~geeRVpVIn~~tGk~L~G~~AP~l~~L~~WL~~nP~y~v~p 55 (87)
T 2v0f_A 8 LDINTLTGEERVPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVAP 55 (87)
T ss_dssp SCGGGTTTTSBCCEEESSSCCEECSSSSCBGGGHHHHHHHCTTEEECH
T ss_pred cCccccCCcceeeeEecCCcCcccCCcCchhHHHHHHHHHCCCceech
Confidence 566777788999999999999999999999999999999999997653
No 206
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.16 E-value=0.81 Score=52.79 Aligned_cols=45 Identities=16% Similarity=0.292 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHHHhh-cC--CCCeEEecCCCCCHHHHHHHHHHHHHHh
Q psy7773 547 KEYQIKGLEWMVSLY-NN--NLNGILADEMGLGKTVQTIALLTYLMEK 591 (1281)
Q Consensus 547 ~~yQ~~gv~~l~~~~-~~--~~~gILademGlGKTi~ai~ll~~l~~~ 591 (1281)
++.++..+..++..+ .. ..+.+|.-+.|+|||..+-.++..+...
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~ 72 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEV 72 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 455555554333332 22 3346889999999999988887776543
No 207
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=89.03 E-value=1.6 Score=47.39 Aligned_cols=42 Identities=17% Similarity=0.180 Sum_probs=26.6
Q ss_pred hcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc
Q psy7773 561 YNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS 605 (1281)
Q Consensus 561 ~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s 605 (1281)
...+.+.+|.-++|+|||..+-++...+. ....|++.|-...
T Consensus 26 ~~~~~~vll~G~~GtGKt~la~~i~~~~~---~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELIASRLHYLSS---RWQGPFISLNCAA 67 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHHHHHHHHTST---TTTSCEEEEEGGG
T ss_pred hCCCCCEEEECCCCCcHHHHHHHHHHhcC---ccCCCeEEEecCC
Confidence 34566788999999999987766554321 1224655554333
No 208
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=88.86 E-value=2.4 Score=47.37 Aligned_cols=41 Identities=29% Similarity=0.299 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHH
Q psy7773 548 EYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 548 ~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~ 589 (1281)
+..+..+..++..- ...+.+|..+.|+|||..+-+++..+.
T Consensus 31 ~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 31 EHIVKRLKHYVKTG-SMPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp HHHHHHHHHHHHHT-CCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 44444444333321 122478899999999999888877664
No 209
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=88.38 E-value=0.83 Score=53.04 Aligned_cols=41 Identities=22% Similarity=0.162 Sum_probs=26.6
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHH
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNW 610 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W 610 (1281)
..+.+|.-++|+|||..+-+++..+ ..+++.|.+..+...|
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~------~~~~~~v~~~~l~~~~ 188 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES------NATFFNISAASLTSKY 188 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT------TCEEEEECSCCC----
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh------cCcEEEeeHHHhhccc
Confidence 3466899999999999887775442 2466666666655444
No 210
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=88.12 E-value=1.4 Score=48.91 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=20.4
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHH
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYL 588 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l 588 (1281)
+.+.+|.-++|+|||..+-++...+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999887776654
No 211
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=87.20 E-value=0.95 Score=51.04 Aligned_cols=38 Identities=21% Similarity=0.169 Sum_probs=26.5
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH
Q psy7773 565 LNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL 607 (1281)
Q Consensus 565 ~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l 607 (1281)
.+.+|.-++|+|||..+-+++..+ ...+++.|....++
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~-----~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLV 83 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT-----TSCEEEEEECCSSC
T ss_pred ceEEEECCCCccHHHHHHHHHHHc-----CCCcEEEEEhHHHH
Confidence 456889999999999988777654 12356656555444
No 212
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=86.99 E-value=3.9 Score=45.73 Aligned_cols=45 Identities=7% Similarity=-0.054 Sum_probs=30.5
Q ss_pred cHHHHHHHHHHH-Hhh--cCCCCeEEecCCCCCHHHHHHHHHHHHHHh
Q psy7773 547 KEYQIKGLEWMV-SLY--NNNLNGILADEMGLGKTVQTIALLTYLMEK 591 (1281)
Q Consensus 547 ~~yQ~~gv~~l~-~~~--~~~~~gILademGlGKTi~ai~ll~~l~~~ 591 (1281)
|+-|...+...+ ... ..+.+.+|.-++|+|||.++-.++..+...
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~ 72 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITS 72 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 556666665333 332 233345789999999999999988887643
No 213
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.97 E-value=1.3 Score=49.50 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=20.2
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHH
Q psy7773 566 NGILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 566 ~gILademGlGKTi~ai~ll~~l~ 589 (1281)
+.+|..+.|+|||..+-.++..+.
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 378899999999999888877764
No 214
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=86.79 E-value=0.68 Score=52.25 Aligned_cols=24 Identities=25% Similarity=0.135 Sum_probs=19.3
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHH
Q psy7773 565 LNGILADEMGLGKTVQTIALLTYL 588 (1281)
Q Consensus 565 ~~gILademGlGKTi~ai~ll~~l 588 (1281)
.+.+|.-++|+|||..+-+++..+
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 356889999999999988776653
No 215
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=86.59 E-value=0.47 Score=54.40 Aligned_cols=24 Identities=25% Similarity=0.135 Sum_probs=20.1
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHH
Q psy7773 565 LNGILADEMGLGKTVQTIALLTYL 588 (1281)
Q Consensus 565 ~~gILademGlGKTi~ai~ll~~l 588 (1281)
.+.+|.-++|+|||..+-+++..+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 456889999999999988877665
No 216
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=86.47 E-value=1.8 Score=42.52 Aligned_cols=27 Identities=19% Similarity=0.070 Sum_probs=21.0
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHH
Q psy7773 563 NNLNGILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 563 ~~~~gILademGlGKTi~ai~ll~~l~ 589 (1281)
.+...+|.-++|+|||..+-+++..+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455567889999999988877776654
No 217
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=86.19 E-value=1.4 Score=47.61 Aligned_cols=37 Identities=24% Similarity=0.255 Sum_probs=25.8
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcc
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLST 606 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~ 606 (1281)
..+.+|.-++|+|||..+-++...+ ..+++.+....+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~------~~~~~~~~~~~~ 75 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA------QVPFLAMAGAEF 75 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH------TCCEEEEETTTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh------CCCEEEechHHH
Confidence 3456789999999999887776654 236666655543
No 218
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=85.35 E-value=1.3 Score=50.77 Aligned_cols=53 Identities=15% Similarity=0.183 Sum_probs=35.2
Q ss_pred cHHHHHHHHHHHHhhcCCC----CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q psy7773 547 KEYQIKGLEWMVSLYNNNL----NGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVP 603 (1281)
Q Consensus 547 ~~yQ~~gv~~l~~~~~~~~----~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P 603 (1281)
.+.++..+.++......+. +.+|.-++|+|||..+-++...+. ...|++.+..
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~----~~~~~~~~~~ 105 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG----PDTPFTAIAG 105 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC----SSCCEEEEEG
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc----ccCCcccccc
Confidence 4566666666665554333 468899999999999888876652 2246655554
No 219
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=85.15 E-value=1.3 Score=49.48 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=20.1
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHH
Q psy7773 563 NNLNGILADEMGLGKTVQTIALLTYL 588 (1281)
Q Consensus 563 ~~~~gILademGlGKTi~ai~ll~~l 588 (1281)
.+.+.+|.-++|+|||..+-+++..+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh
Confidence 34556889999999999887776543
No 220
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=84.59 E-value=2.4 Score=47.25 Aligned_cols=42 Identities=14% Similarity=0.193 Sum_probs=27.6
Q ss_pred cCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcc
Q psy7773 562 NNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLST 606 (1281)
Q Consensus 562 ~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~ 606 (1281)
....+.+|.-++|+|||..|-++.... ....+|++.|-...+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~---~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACS---ARSDRPLVTLNCAAL 64 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHS---SCSSSCCCEEECSSC
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhC---cccCCCeEEEeCCCC
Confidence 456678899999999998876654432 123357666644444
No 221
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=84.49 E-value=0.77 Score=47.80 Aligned_cols=21 Identities=19% Similarity=0.482 Sum_probs=16.6
Q ss_pred eEEecCCCCCHHHHHHHHHHH
Q psy7773 567 GILADEMGLGKTVQTIALLTY 587 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~ 587 (1281)
.++...+|+|||..++.++..
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 467788999999998776544
No 222
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=84.46 E-value=5.8 Score=45.18 Aligned_cols=42 Identities=24% Similarity=0.162 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHH
Q psy7773 547 KEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYL 588 (1281)
Q Consensus 547 ~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l 588 (1281)
++..+..+...+..-..+...+|..+.|+|||..+-.++..+
T Consensus 21 ~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp CHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344444444444321112224789999999999888777665
No 223
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.20 E-value=2.2 Score=49.91 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=31.6
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHH
Q psy7773 563 NNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWV 611 (1281)
Q Consensus 563 ~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~ 611 (1281)
...|.+|.-++|+|||+.|-+++..+- .+++.|....++..|.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~------~~fi~vs~s~L~sk~v 284 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTD------ATFIRVIGSELVQKYV 284 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHT------CEEEEEEGGGGCCCSS
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccC------CCeEEEEhHHhhcccC
Confidence 355668899999999999888876652 3677777766665553
No 224
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.08 E-value=1.7 Score=50.82 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=31.3
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHH
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWV 611 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~ 611 (1281)
..|.+|..++|+|||+.|-+++..+- .+++.|....++..|.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~------~~~~~v~~s~l~sk~~ 256 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIG------ANFIFSPASGIVDKYI 256 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT------CEEEEEEGGGTCCSSS
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC------CCEEEEehhhhccccc
Confidence 45678899999999999988876652 3677777666665554
No 225
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=83.99 E-value=2.8 Score=49.88 Aligned_cols=85 Identities=13% Similarity=0.158 Sum_probs=57.8
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH-HHHHHHHHHHCCCCcEEEEeCC-----------H---H
Q psy7773 567 GILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL-SNWVLEFEKWAPSANVVAYKGS-----------P---L 631 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l-~~W~~E~~~~~p~~~~~~~~g~-----------~---~ 631 (1281)
..|..-+|+|||+.+..++.. ..+|+|||||.... .+|..++..|+|.. |..|... . .
T Consensus 17 ~~l~g~~gs~ka~~~a~l~~~------~~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~fp~~e~lpyd~~~p~~~~~~ 89 (483)
T 3hjh_A 17 RLLGELTGAACATLVAEIAER------HAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDSFSPHQDIIS 89 (483)
T ss_dssp EEEECCCTTHHHHHHHHHHHH------SSSCEEEEESSHHHHHHHHHHHHHTCSSC-EEECCCCCSCTTCSSCCCHHHHH
T ss_pred EEEeCCCchHHHHHHHHHHHH------hCCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEEeCcccccccccCCChHHHH
Confidence 466777999999987776533 23699999998665 89999999998865 5554432 1 1
Q ss_pred HHHHHHhhhccCCccEEEechHHHhhc
Q psy7773 632 ARRALQGRMKNSKFNVLLTTYEFIIKD 658 (1281)
Q Consensus 632 ~r~~~~~~~~~~~~~vvItTye~l~~~ 658 (1281)
.|-............|||||...+...
T Consensus 90 ~Rl~~l~~L~~~~~~ivv~sv~al~~~ 116 (483)
T 3hjh_A 90 SRLSTLYQLPTMQRGVLIVPVNTLMQR 116 (483)
T ss_dssp HHHHHHHHGGGCCSSEEEEEHHHHHBC
T ss_pred HHHHHHHHHHhCCCCEEEEEHHHHhhc
Confidence 121222233345567999999988754
No 226
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=83.80 E-value=6.6 Score=44.95 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=18.7
Q ss_pred CeEEecCCCCCHHHHHHHHHHHH
Q psy7773 566 NGILADEMGLGKTVQTIALLTYL 588 (1281)
Q Consensus 566 ~gILademGlGKTi~ai~ll~~l 588 (1281)
+.+|..+.|+|||..+-.++..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999998887766554
No 227
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=83.73 E-value=1.5 Score=51.89 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=25.2
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHH
Q psy7773 565 LNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNW 610 (1281)
Q Consensus 565 ~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W 610 (1281)
.+.+|.-++|+|||..+-+++..+ ...+++.|....++..|
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~-----~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLVSKW 208 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC-----CSSEEEEECCC------
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc-----CCCCEEEEeHHHHHhhh
Confidence 456889999999999888776554 12456666555554444
No 228
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=83.42 E-value=4.1 Score=48.09 Aligned_cols=61 Identities=15% Similarity=0.091 Sum_probs=41.9
Q ss_pred HHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHH
Q psy7773 552 KGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEF 614 (1281)
Q Consensus 552 ~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~ 614 (1281)
.++..++.-+..+.-.+|+..+|+|||.-++.++...... ...|++++..---..++...+
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~~vl~~slE~~~~~l~~R~ 248 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK--EGVGVGIYSLEMPAAQLTLRM 248 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEEEEESSSCHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEECCCCHHHHHHHH
Confidence 4456666444455556899999999999998888776532 235899988765555555444
No 229
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.08 E-value=3 Score=47.20 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=19.9
Q ss_pred eEEecCCCCCHHHHHHHHHHHHH
Q psy7773 567 GILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~ 589 (1281)
.+|..+.|+|||..+-+++..+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 68899999999999988887764
No 230
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=82.89 E-value=2 Score=47.55 Aligned_cols=35 Identities=14% Similarity=-0.021 Sum_probs=24.8
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc
Q psy7773 565 LNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS 605 (1281)
Q Consensus 565 ~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s 605 (1281)
.+.+|..++|+|||..+-+++..+ ..+++.|....
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l------~~~~i~v~~~~ 71 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM------GINPIMMSAGE 71 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH------TCCCEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeHHH
Confidence 345778999999999988887766 23555555433
No 231
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=82.47 E-value=4.4 Score=47.93 Aligned_cols=60 Identities=17% Similarity=0.137 Sum_probs=41.2
Q ss_pred HHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHH
Q psy7773 552 KGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLE 613 (1281)
Q Consensus 552 ~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E 613 (1281)
.++..++.-+..+.-.+|+..+|+|||.-++.++..+.... ..+++++...-...++...
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~E~s~~~l~~r 250 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSLEMSAQQLVMR 250 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEESSSCHHHHHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEECCCCHHHHHHH
Confidence 35666664455565678999999999999988887776432 2488888875444444433
No 232
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.10 E-value=1.8 Score=50.21 Aligned_cols=44 Identities=23% Similarity=0.239 Sum_probs=32.7
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHH
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLE 613 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E 613 (1281)
..|.+|.-++|+|||+.|-+++..+- .+++.|....++..|.-+
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~------~~fi~v~~s~l~sk~vGe 259 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTS------ATFLRIVGSELIQKYLGD 259 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHT------CEEEEEESGGGCCSSSSH
T ss_pred CCCCceECCCCchHHHHHHHHHHHhC------CCEEEEEHHHhhhccCch
Confidence 45678899999999999988876652 477777777766655433
No 233
>2cka_A Chromodomain-helicase-DNA-binding protein 8; BRK domain, transcription elongation, chromatin remodeling, protein-protein interaction, transcription; NMR {Homo sapiens} SCOP: d.76.2.1
Probab=81.96 E-value=0.68 Score=41.01 Aligned_cols=41 Identities=34% Similarity=0.541 Sum_probs=37.4
Q ss_pred cccccceeecccccccCCCCCCCchhhHhhhhhcCCCCccc
Q psy7773 439 LEDLRITVKETNSDNKLRGEDAPPAKQIKEWLASHPGWEVV 479 (1281)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1281)
..|..|.+.++.+|..+.|+++|...+|..|+..+|+|.++
T Consensus 41 ~~E~rVpVv~~~tG~~l~G~~Ap~~K~L~~WLk~np~y~vd 81 (95)
T 2cka_A 41 DLETRIPVINKVDGTLLVGEDAPRRAELEMWLQGHPEFAVD 81 (95)
T ss_dssp CSSSBCCEEETTTCCEECTTSSCBHHHHHHHHHHCTTEEEC
T ss_pred CCCcccceeeCCCCccccCCCCchHhHHHHHHHHCCCCEeC
Confidence 36788999999999999999999999999999999999654
No 234
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=81.95 E-value=0.75 Score=55.06 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=19.4
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHH
Q psy7773 563 NNLNGILADEMGLGKTVQTIALLTY 587 (1281)
Q Consensus 563 ~~~~gILademGlGKTi~ai~ll~~ 587 (1281)
...+.+|.-++|+|||..+-++...
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHH
Confidence 3456788999999999988776543
No 235
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.51 E-value=5 Score=45.49 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhh-cCC--CCeEEecCCCCCHHHHHHHHHHHHH
Q psy7773 550 QIKGLEWMVSLY-NNN--LNGILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 550 Q~~gv~~l~~~~-~~~--~~gILademGlGKTi~ai~ll~~l~ 589 (1281)
|...+..+.... ..+ .+.+|..+.|+|||..+-+++..+.
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 334445554433 222 2367899999999988877766553
No 236
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=81.30 E-value=4 Score=49.24 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=19.5
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHH
Q psy7773 565 LNGILADEMGLGKTVQTIALLTYL 588 (1281)
Q Consensus 565 ~~gILademGlGKTi~ai~ll~~l 588 (1281)
.+.+|..+.|+|||..+-+++..+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 456889999999999888776654
No 237
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=81.25 E-value=2.2 Score=48.93 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=27.9
Q ss_pred cHHHHHHHHHHHHhh---cCCCCeEEecCCCCCHHHHHHHHHHHHHH
Q psy7773 547 KEYQIKGLEWMVSLY---NNNLNGILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 547 ~~yQ~~gv~~l~~~~---~~~~~gILademGlGKTi~ai~ll~~l~~ 590 (1281)
++.++..+..++... ..+...+|..+.|+|||..+-.++..+..
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455555544333221 22445688999999999988877766643
No 238
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.11 E-value=1.3 Score=51.75 Aligned_cols=41 Identities=15% Similarity=0.153 Sum_probs=30.3
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHH
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNW 610 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W 610 (1281)
..|.+|..++|+|||..|-+++..+- .+++.|....++..|
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~------~~~~~v~~~~l~~~~ 246 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTK------AAFIRVNGSEFVHKY 246 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHT------CEEEEEEGGGTCCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC------CCeEEEecchhhccc
Confidence 44568899999999999988876651 467777666665544
No 239
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=80.60 E-value=1.6 Score=46.01 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=23.4
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHh
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYLMEK 591 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l~~~ 591 (1281)
..+.++....|.|||..++.+...+...
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 3456889999999999999999888744
No 240
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=80.46 E-value=0.96 Score=50.56 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=20.2
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHH
Q psy7773 566 NGILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 566 ~gILademGlGKTi~ai~ll~~l~ 589 (1281)
+.+|..+.|+|||..+-+++..+.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhc
Confidence 468899999999999888877764
No 241
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=80.34 E-value=1.7 Score=49.68 Aligned_cols=37 Identities=19% Similarity=0.120 Sum_probs=25.5
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcc
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLST 606 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~ 606 (1281)
..+.+|.-++|+|||..+-+++..+ ..+++.|....+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~------~~~~~~i~~~~l 153 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS------GATFFSISASSL 153 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT------TCEEEEEEGGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc------CCeEEEEehHHh
Confidence 4456889999999999887776543 235555555443
No 242
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=79.91 E-value=8.4 Score=39.97 Aligned_cols=54 Identities=9% Similarity=-0.021 Sum_probs=33.6
Q ss_pred HHHHHHH-hhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc--cHHHHHH
Q psy7773 553 GLEWMVS-LYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS--TLSNWVL 612 (1281)
Q Consensus 553 gv~~l~~-~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s--~l~~W~~ 612 (1281)
++..++. -...+.-.+|+-+.|+|||..+..++. . ..++++++.-.. ....|..
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~---~~~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---L---SGKKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---H---HCSEEEEEESSCCCCHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---H---cCCcEEEEECCCCCCHHHHHH
Confidence 4555553 333444457899999999988877766 1 124677776544 3345554
No 243
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=79.55 E-value=3.8 Score=50.43 Aligned_cols=49 Identities=22% Similarity=0.228 Sum_probs=31.3
Q ss_pred hcCCCCeEEecCCCCCHHHHHHHHHHHHHHhc-----------CCCCCEEEEeCCccHHH
Q psy7773 561 YNNNLNGILADEMGLGKTVQTIALLTYLMEKK-----------KNLGPYLVIVPLSTLSN 609 (1281)
Q Consensus 561 ~~~~~~gILademGlGKTi~ai~ll~~l~~~~-----------~~~~~~LIV~P~s~l~~ 609 (1281)
...+...+|.-+.|+|||..+-++...+.... ....|.+.+||.....+
T Consensus 57 i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~ 116 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGRR 116 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHHH
T ss_pred ccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHHH
Confidence 34667889999999999988876665432110 01246677777665443
No 244
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=79.29 E-value=5 Score=43.62 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=18.8
Q ss_pred CCeEEecCCCCCHHHHHHHHHHH
Q psy7773 565 LNGILADEMGLGKTVQTIALLTY 587 (1281)
Q Consensus 565 ~~gILademGlGKTi~ai~ll~~ 587 (1281)
.+.+|.-++|+|||..|-++...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 34678999999999998877665
No 245
>2dl6_A Chromodomain-helicase-DNA-binding protein 8; BRK, CHD8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.76.2.1
Probab=78.93 E-value=0.84 Score=39.41 Aligned_cols=41 Identities=34% Similarity=0.541 Sum_probs=37.4
Q ss_pred cccccceeecccccccCCCCCCCchhhHhhhhhcCCCCccc
Q psy7773 439 LEDLRITVKETNSDNKLRGEDAPPAKQIKEWLASHPGWEVV 479 (1281)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1281)
..|..|.+.+..+|..+.|+++|....|..|+..+|+|+++
T Consensus 15 ~~EerVpVi~~~tG~~l~G~~AP~~k~L~~WLk~nP~y~vd 55 (83)
T 2dl6_A 15 DLETRIPVINKVDGTLLVGEDAPRRAELEMWLQGHPEFAVD 55 (83)
T ss_dssp CTTSBCCEECSSSCCEECGGGSCBSTTHHHHHHHCTTSCBC
T ss_pred CCCcceeeEeCCCCccccCCCchhHhHHHHHHhHCCCCEeC
Confidence 46788999999999999999999999999999999999764
No 246
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=78.87 E-value=2.3 Score=48.62 Aligned_cols=34 Identities=26% Similarity=0.270 Sum_probs=24.8
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVP 603 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P 603 (1281)
+.+.+|.-++|+|||..|-++...+ ..|++.+-.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~------~~~~~~~~~ 84 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL------DVPFTMADA 84 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc------CCCEEEech
Confidence 4567899999999999887776554 246665544
No 247
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=78.85 E-value=4.8 Score=47.72 Aligned_cols=35 Identities=23% Similarity=0.174 Sum_probs=24.4
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc
Q psy7773 565 LNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS 605 (1281)
Q Consensus 565 ~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s 605 (1281)
.+.+|.-++|+|||..+-++...+ ..|++.+....
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~~------~~~f~~is~~~ 84 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGEA------NVPFFHISGSD 84 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH------TCCEEEEEGGG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc------CCCeeeCCHHH
Confidence 456889999999999887766543 24666554433
No 248
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=77.92 E-value=6.2 Score=50.05 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=21.9
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHH
Q psy7773 563 NNLNGILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 563 ~~~~gILademGlGKTi~ai~ll~~l~ 589 (1281)
.+.+.+|.-++|+|||..+-+++..+.
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 455678999999999999888777664
No 249
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=76.96 E-value=7.7 Score=45.29 Aligned_cols=36 Identities=22% Similarity=0.202 Sum_probs=23.9
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCC
Q psy7773 567 GILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL 604 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~ 604 (1281)
.+++-..|+|||.++..++.++... .....||-++.
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~~--G~kVllv~~D~ 135 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKKR--GYKVGLVAADV 135 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHT--TCCEEEEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEecCc
Confidence 3567789999999998888777532 22344444443
No 250
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=75.70 E-value=8 Score=45.17 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=23.3
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe
Q psy7773 568 ILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIV 602 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~ 602 (1281)
+++-..|+|||.++..++.++... ..++++|+
T Consensus 104 livG~~G~GKTTt~~kLA~~l~~~---G~kVllv~ 135 (443)
T 3dm5_A 104 LMVGIQGSGKTTTVAKLARYFQKR---GYKVGVVC 135 (443)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEE
T ss_pred EEECcCCCCHHHHHHHHHHHHHHC---CCeEEEEe
Confidence 567779999999999998887532 23555555
No 251
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=74.00 E-value=5.3 Score=47.09 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=17.9
Q ss_pred CeEEecCCCCCHHHHHHHHHHH
Q psy7773 566 NGILADEMGLGKTVQTIALLTY 587 (1281)
Q Consensus 566 ~gILademGlGKTi~ai~ll~~ 587 (1281)
+.||.-++|+|||..+-++...
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5689999999999888766544
No 252
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=73.96 E-value=22 Score=36.99 Aligned_cols=48 Identities=15% Similarity=0.202 Sum_probs=31.1
Q ss_pred cCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHH
Q psy7773 562 NNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVL 612 (1281)
Q Consensus 562 ~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~ 612 (1281)
..+...+|..+.|+|||..+..++..+... .++++++.......+...
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~~~~~~~~ 68 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEESRDSIIR 68 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSSCHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEcccCHHHHHH
Confidence 344445778899999998888777665533 357777765444443333
No 253
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=73.51 E-value=5.4 Score=45.74 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=20.0
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHH
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYL 588 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l 588 (1281)
..+.+|..++|+|||..|-++...+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4467899999999999887776554
No 254
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=72.33 E-value=2.7 Score=46.47 Aligned_cols=24 Identities=29% Similarity=0.174 Sum_probs=19.1
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHH
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTY 587 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~ 587 (1281)
+.+.+|..++|+|||..+-++...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 446688999999999988776654
No 255
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=72.22 E-value=6.9 Score=48.07 Aligned_cols=116 Identities=18% Similarity=0.226 Sum_probs=66.2
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCCCCcE
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSANV 623 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p~~~~ 623 (1281)
+.+..-|..++..+..... + ..+|-..-|-|||..+..++..+. +.++|.+|..--.+-..+|..-
T Consensus 174 ~~~T~dQ~~al~~~~~~~~-~-~~vlta~RGRGKSa~lG~~~a~~~------~~~~vtAP~~~a~~~l~~~~~~------ 239 (671)
T 2zpa_A 174 GAPQPEQQQLLKQLMTMPP-G-VAAVTAARGRGKSALAGQLISRIA------GRAIVTAPAKASTDVLAQFAGE------ 239 (671)
T ss_dssp SSCCHHHHHHHHHHTTCCS-E-EEEEEECTTSSHHHHHHHHHHHSS------SCEEEECSSCCSCHHHHHHHGG------
T ss_pred CCCCHHHHHHHHHHHHhhh-C-eEEEecCCCCCHHHHHHHHHHHHH------hCcEEECCCHHHHHHHHHHhhC------
Confidence 4678899999987775432 2 235666699999966655555542 3568899964432222222110
Q ss_pred EEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEEeec
Q psy7773 624 VAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLTG 703 (1281)
Q Consensus 624 ~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllLTg 703 (1281)
.+-...++.+.. .....++||||||=-+-- -.+..+...-.+++||.
T Consensus 240 ----------------------~i~~~~Pd~~~~-----~~~~~dlliVDEAAaIp~------pll~~ll~~~~~v~~~t 286 (671)
T 2zpa_A 240 ----------------------KFRFIAPDALLA-----SDEQADWLVVDEAAAIPA------PLLHQLVSRFPRTLLTT 286 (671)
T ss_dssp ----------------------GCCBCCHHHHHH-----SCCCCSEEEEETGGGSCH------HHHHHHHTTSSEEEEEE
T ss_pred ----------------------CeEEeCchhhhh-----CcccCCEEEEEchhcCCH------HHHHHHHhhCCeEEEEe
Confidence 011112222211 112478999999987732 22333334445899998
Q ss_pred CCC
Q psy7773 704 TPL 706 (1281)
Q Consensus 704 TPl 706 (1281)
|-.
T Consensus 287 Tv~ 289 (671)
T 2zpa_A 287 TVQ 289 (671)
T ss_dssp EBS
T ss_pred cCC
Confidence 854
No 256
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=71.94 E-value=8.8 Score=45.13 Aligned_cols=58 Identities=12% Similarity=0.015 Sum_probs=40.6
Q ss_pred HHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHH
Q psy7773 552 KGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVL 612 (1281)
Q Consensus 552 ~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~ 612 (1281)
.++..++.-+..+.-.||+..+|+|||.-++.++...... ..++|++..---..++..
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlEms~~ql~~ 242 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLEMGKKENIK 242 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSSSCTTHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHH
Confidence 4566666444555557899999999999999988877643 358888877544344433
No 257
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=70.97 E-value=12 Score=45.37 Aligned_cols=91 Identities=15% Similarity=0.181 Sum_probs=59.1
Q ss_pred hhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEec--cccccccCcc---c
Q psy7773 885 KETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLST--RAGGLGLNLQ---A 959 (1281)
Q Consensus 885 ~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT--~agg~GlNL~---~ 959 (1281)
...+.++|||+.+-..++.+... .+.++ .+.|... .+..+++.|...+.. +|+++ ....+|||++ +
T Consensus 390 ~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v-~~q~~~~--~~~~~~~~~~~~~~~---vl~~v~gg~~~EGiD~~d~~g 460 (551)
T 3crv_A 390 FQAKANVLVVFPSYEIMDRVMSR---ISLPK-YVESEDS--SVEDLYSAISANNKV---LIGSVGKGKLAEGIELRNNDR 460 (551)
T ss_dssp HHCSSEEEEEESCHHHHHHHHTT---CCSSE-EECCSSC--CHHHHHHHTTSSSSC---EEEEESSCCSCCSSCCEETTE
T ss_pred HhCCCCEEEEecCHHHHHHHHHh---cCCcE-EEcCCCC--CHHHHHHHHHhcCCe---EEEEEecceecccccccccCC
Confidence 34556788888888888777752 34443 3344321 256688888643332 57776 6899999999 3
Q ss_pred --CCEEEEeCCCCChhhhhhHhHhHHhh
Q psy7773 960 --ADTVIIFDSDWNPHQDLQAQDRAHRI 985 (1281)
Q Consensus 960 --ad~VI~~D~~wnp~~~~Qa~gR~~Ri 985 (1281)
+..||+.-.|+-+. +-....|...+
T Consensus 461 ~~l~~viI~~lPfp~~-dp~~~ar~~~~ 487 (551)
T 3crv_A 461 SLISDVVIVGIPYPPP-DDYLKILAQRV 487 (551)
T ss_dssp ESEEEEEEESCCCCCC-SHHHHHHHHHT
T ss_pred cceeEEEEEcCCCCCC-CHHHHHHHHHH
Confidence 78999998887544 44445555444
No 258
>2ckc_A Chromodomain-helicase-DNA-binding protein 7; protein-protein interaction, phosphorylation, disease mutation, nucleotide-binding; NMR {Homo sapiens} SCOP: d.76.2.1 PDB: 2v0e_A
Probab=70.52 E-value=2 Score=35.92 Aligned_cols=42 Identities=40% Similarity=0.629 Sum_probs=36.4
Q ss_pred ccccccceeecccccccCCCCCCCchhhHhhhhhcCCCCccc
Q psy7773 438 QLEDLRITVKETNSDNKLRGEDAPPAKQIKEWLASHPGWEVV 479 (1281)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (1281)
.+.|..|.+....+|..+.||++|...+|.+|+..+|++..+
T Consensus 21 l~~e~pVPViN~~dGtrL~Ge~AP~~KdL~dWLrqhP~y~vD 62 (80)
T 2ckc_A 21 LDPDTRIPVINLEDGTRLVGEDAPKNKDLVEWLKLHPTYTVD 62 (80)
T ss_dssp CCTTCBCCEEETTTTEEECTTSSCBHHHHHHHHHHCTTEEES
T ss_pred CCCCCccceeecCCCcccccccCccccCHHHHHHHCCCcEEe
Confidence 345677888888899999999999999999999999998653
No 259
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=70.31 E-value=9.1 Score=42.70 Aligned_cols=61 Identities=11% Similarity=0.013 Sum_probs=41.3
Q ss_pred HHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHH
Q psy7773 552 KGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFE 615 (1281)
Q Consensus 552 ~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~ 615 (1281)
.++..++.-+..+.-.+|+..+|+|||.-++.++...... ..++|++..--...+....+.
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~---g~~vl~~slE~s~~~l~~R~~ 116 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLEMGKKENIKRLI 116 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT---TCEEEEEESSSCHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEECCCCHHHHHHHHH
Confidence 4455555444555557899999999999888887766532 268999887655555544443
No 260
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=70.12 E-value=22 Score=39.77 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=18.5
Q ss_pred CCeEEecCCCCCHHHHHHHHHHH
Q psy7773 565 LNGILADEMGLGKTVQTIALLTY 587 (1281)
Q Consensus 565 ~~gILademGlGKTi~ai~ll~~ 587 (1281)
.+.+|.-++|+|||..+-++...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46789999999999988776443
No 261
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=70.07 E-value=12 Score=48.16 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=22.1
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHH
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYLME 590 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l~~ 590 (1281)
..+.+|.-++|+|||..+-+++..+..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 446789999999999998888877653
No 262
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=69.85 E-value=9.9 Score=43.87 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHH-Hhhc-----CCCCeEE--ecCCCCCHHHHHHHHHHHHH
Q psy7773 547 KEYQIKGLEWMV-SLYN-----NNLNGIL--ADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 547 ~~yQ~~gv~~l~-~~~~-----~~~~gIL--ademGlGKTi~ai~ll~~l~ 589 (1281)
|+.++..+.-++ .... .+...+| ..+.|+|||..+-.++..+.
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 455566555444 3221 2334567 79999999998887776654
No 263
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=67.83 E-value=6.4 Score=49.59 Aligned_cols=67 Identities=18% Similarity=0.121 Sum_probs=48.1
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC-CCCCEEEEeCCccH-HHHHHHHHHH
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKK-NLGPYLVIVPLSTL-SNWVLEFEKW 617 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~-~~~~~LIV~P~s~l-~~W~~E~~~~ 617 (1281)
.|-|.|.++|.. .....++-...|+|||.+.+.-+.+++...+ ....+|+|+.+... ......+...
T Consensus 11 ~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 11 HLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 689999998853 2345566677999999999999999986533 34579999987655 3344444443
No 264
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=65.59 E-value=11 Score=41.49 Aligned_cols=33 Identities=27% Similarity=0.277 Sum_probs=21.9
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe
Q psy7773 568 ILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIV 602 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~ 602 (1281)
++.-..|+|||..+..++..+....+ ..++++.
T Consensus 109 ~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~ 141 (296)
T 2px0_A 109 VLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFIT 141 (296)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEe
Confidence 45567999999998887776653222 2555554
No 265
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=64.94 E-value=9.1 Score=48.49 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=20.1
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHH
Q psy7773 566 NGILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 566 ~gILademGlGKTi~ai~ll~~l~ 589 (1281)
+.+|..++|+|||..|-++...+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~ 546 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIF 546 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 368899999999999988777663
No 266
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=62.98 E-value=14 Score=41.99 Aligned_cols=57 Identities=14% Similarity=0.026 Sum_probs=39.1
Q ss_pred HHHHHHHH--hhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHH
Q psy7773 552 KGLEWMVS--LYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWV 611 (1281)
Q Consensus 552 ~gv~~l~~--~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~ 611 (1281)
.++..++. -+..+.-.+|+-+.|+|||..++.++..+... .+++++|.......+|.
T Consensus 60 ~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~---g~~vlyi~~E~s~~~~~ 118 (366)
T 1xp8_A 60 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA---GGTCAFIDAEHALDPVY 118 (366)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHHH
T ss_pred HHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC---CCeEEEEECCCChhHHH
Confidence 34555553 23344446789999999999999888776532 35888888876666653
No 267
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=62.50 E-value=15 Score=41.03 Aligned_cols=36 Identities=25% Similarity=0.192 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHH
Q psy7773 547 KEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALL 585 (1281)
Q Consensus 547 ~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll 585 (1281)
|+.++..+..++. .+...+|..+.|+|||..+-.++
T Consensus 17 R~~el~~L~~~l~---~~~~v~i~G~~G~GKT~Ll~~~~ 52 (350)
T 2qen_A 17 REEESRKLEESLE---NYPLTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp CHHHHHHHHHHHH---HCSEEEEECCTTSSHHHHHHHHH
T ss_pred hHHHHHHHHHHHh---cCCeEEEECCCcCCHHHHHHHHH
Confidence 5666666554443 24556789999999997665554
No 268
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=62.25 E-value=14 Score=41.73 Aligned_cols=56 Identities=13% Similarity=-0.060 Sum_probs=37.1
Q ss_pred HHHHHHHH--hhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHH
Q psy7773 552 KGLEWMVS--LYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNW 610 (1281)
Q Consensus 552 ~gv~~l~~--~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W 610 (1281)
.++..++. -+..+.-.+|+-+.|+|||..++.++..+... .++++++.-.....++
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFIDAEHALDPE 104 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCCCcCHH
Confidence 34555543 23334445788999999999999888776532 3578888776555444
No 269
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=58.93 E-value=62 Score=32.69 Aligned_cols=112 Identities=17% Similarity=0.139 Sum_probs=60.4
Q ss_pred ecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC--CccHHHHHHHHHHHCCCCcEEEEeCCHHHHHHHHhhhccCCccE
Q psy7773 570 ADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVP--LSTLSNWVLEFEKWAPSANVVAYKGSPLARRALQGRMKNSKFNV 647 (1281)
Q Consensus 570 ademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P--~s~l~~W~~E~~~~~p~~~~~~~~g~~~~r~~~~~~~~~~~~~v 647 (1281)
.---|.|||..++.+...+... + .++|+|=- ...+..|... ....+++
T Consensus 8 s~kgG~GKTt~a~~la~~la~~-g--~~vlliD~D~~~~~~~~~~~---------------------------~~~~~~~ 57 (206)
T 4dzz_A 8 NPKGGSGKTTAVINIATALSRS-G--YNIAVVDTDPQMSLTNWSKA---------------------------GKAAFDV 57 (206)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHT-T--CCEEEEECCTTCHHHHHHTT---------------------------SCCSSEE
T ss_pred eCCCCccHHHHHHHHHHHHHHC-C--CeEEEEECCCCCCHHHHHhc---------------------------CCCCCcE
Confidence 3457999999999998888642 2 36666653 3444445320 0122445
Q ss_pred EEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEEeecCCCCCChhHHHHHHhhh
Q psy7773 648 LLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLTGTPLQNKLPELWALLNFL 720 (1281)
Q Consensus 648 vItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllLTgTPl~n~~~el~~ll~fl 720 (1281)
+-...+.+......+.. .+++||||=+-.+ + .....++. .+... ++-.+|-... ..+..++.++
T Consensus 58 ~~~~~~~l~~~l~~l~~-~yD~viiD~~~~~-~--~~~~~~l~---~ad~v-iiv~~~~~~~-~~~~~~~~~l 121 (206)
T 4dzz_A 58 FTAASEKDVYGIRKDLA-DYDFAIVDGAGSL-S--VITSAAVM---VSDLV-IIPVTPSPLD-FSAAGSVVTV 121 (206)
T ss_dssp EECCSHHHHHTHHHHTT-TSSEEEEECCSSS-S--HHHHHHHH---HCSEE-EEEECSCTTT-HHHHHHHHHH
T ss_pred EecCcHHHHHHHHHhcC-CCCEEEEECCCCC-C--HHHHHHHH---HCCEE-EEEecCCHHH-HHHHHHHHHH
Confidence 54444555444444433 5899999976655 2 11122221 24444 3433444444 5566555555
No 270
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=55.92 E-value=5.4 Score=50.32 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=27.6
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHH
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNW 610 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W 610 (1281)
..+.+|.-++|+|||+.|-+++..+ ..+++.|....++..|
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~------~~~f~~v~~~~l~s~~ 551 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLTMW 551 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTT------TCEEEECCHHHHHTTT
T ss_pred CceEEEecCCCCCchHHHHHHHHHh------CCceEEeccchhhccc
Confidence 4467899999999998887776543 2355555545544444
No 271
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=54.95 E-value=14 Score=40.92 Aligned_cols=26 Identities=27% Similarity=0.287 Sum_probs=22.4
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHH
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l~ 589 (1281)
+.+.+|..++|+|||..+.+++..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999998888776
No 272
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=54.75 E-value=54 Score=36.41 Aligned_cols=36 Identities=14% Similarity=0.069 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHH
Q psy7773 547 KEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTY 587 (1281)
Q Consensus 547 ~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~ 587 (1281)
|+.++..+. . +.. ...+|..+.|+|||..+-.++..
T Consensus 18 R~~el~~L~---~-l~~-~~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 18 REKEIEKLK---G-LRA-PITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp CHHHHHHHH---H-TCS-SEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHHHHHH---H-hcC-CcEEEECCCCCCHHHHHHHHHHh
Confidence 455555443 3 333 45678899999999877666544
No 273
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.80 E-value=4.7 Score=47.06 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=31.9
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHH
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWV 611 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~ 611 (1281)
..|.+|..++|+|||+.|-+++..+- .+++.|....++..|.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~~------~~f~~v~~s~l~~~~v 256 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQTN------ATFLKLAAPQLVQMYI 256 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT------CEEEEEEGGGGCSSCS
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHhC------CCEEEEehhhhhhccc
Confidence 44668899999999999888876652 4777777777766554
No 274
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=53.61 E-value=77 Score=34.13 Aligned_cols=53 Identities=15% Similarity=0.198 Sum_probs=33.4
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHHHhcC--------CCCCEEEEeCCccHHHHHHHHHH
Q psy7773 563 NNLNGILADEMGLGKTVQTIALLTYLMEKKK--------NLGPYLVIVPLSTLSNWVLEFEK 616 (1281)
Q Consensus 563 ~~~~gILademGlGKTi~ai~ll~~l~~~~~--------~~~~~LIV~P~s~l~~W~~E~~~ 616 (1281)
.+.-.+|+-+.|+|||..+..++..+. ... ..++++++.......+....+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~ 89 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA-GGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHA 89 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH-TCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh-cCCCcCCCccCCCccEEEEECCCCHHHHHHHHHH
Confidence 444567888999999999888777543 210 13577777765555444333333
No 275
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=51.33 E-value=62 Score=38.41 Aligned_cols=22 Identities=27% Similarity=0.240 Sum_probs=17.6
Q ss_pred CeEEecCCCCCHHHHHHHHHHH
Q psy7773 566 NGILADEMGLGKTVQTIALLTY 587 (1281)
Q Consensus 566 ~gILademGlGKTi~ai~ll~~ 587 (1281)
+.+|.-++|+|||..+-++...
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4688999999999887666544
No 276
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=51.20 E-value=90 Score=32.39 Aligned_cols=54 Identities=17% Similarity=0.017 Sum_probs=31.5
Q ss_pred HHHHHHHH-hhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhc---CCCCCEEEEeCCc
Q psy7773 552 KGLEWMVS-LYNNNLNGILADEMGLGKTVQTIALLTYLMEKK---KNLGPYLVIVPLS 605 (1281)
Q Consensus 552 ~gv~~l~~-~~~~~~~gILademGlGKTi~ai~ll~~l~~~~---~~~~~~LIV~P~s 605 (1281)
.++.+++. -...+.-.+|+-+.|+|||..+..++....... +..++++.+.-..
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 34555552 233344457888999999998887776432111 1234667666544
No 277
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=51.05 E-value=27 Score=38.77 Aligned_cols=41 Identities=15% Similarity=-0.013 Sum_probs=30.6
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHH
Q psy7773 567 GILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLS 608 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~ 608 (1281)
..++-+.|+|||..++.++...... +..++++.|.....+.
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~~-g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMRQ-YPDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHH-CTTCEEEEEESSCCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEeccchhh
Confidence 4678999999999999888877643 2246788888765553
No 278
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=50.92 E-value=28 Score=36.60 Aligned_cols=51 Identities=16% Similarity=0.121 Sum_probs=34.7
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHH
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEK 616 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~ 616 (1281)
+.-.+++.++|+|||.-++.++.......+ .+++++.-.....+....+..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~--~~v~~~s~E~~~~~~~~~~~~ 80 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYG--EPGVFVTLEERARDLRREMAS 80 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHC--CCEEEEESSSCHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcC--CCceeecccCCHHHHHHHHHH
Confidence 334589999999999999888766543332 478888766555555554443
No 279
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=50.82 E-value=15 Score=49.20 Aligned_cols=59 Identities=14% Similarity=0.174 Sum_probs=44.3
Q ss_pred cCcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcC---CCCCEEEEeCCccH
Q psy7773 543 NGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKK---NLGPYLVIVPLSTL 607 (1281)
Q Consensus 543 ~~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~---~~~~~LIV~P~s~l 607 (1281)
+.+|.+-|..+|.. .+.+.++....|+|||.+.+.=+.+++.... ....+|||+++...
T Consensus 8 ~~~~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~a 69 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNAS 69 (1232)
T ss_dssp --CCCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHH
T ss_pred CCCCCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHH
Confidence 45799999998742 3556788888999999998887778775533 44579999998655
No 280
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=49.91 E-value=18 Score=45.80 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=18.9
Q ss_pred CeEEecCCCCCHHHHHHHHHHHH
Q psy7773 566 NGILADEMGLGKTVQTIALLTYL 588 (1281)
Q Consensus 566 ~gILademGlGKTi~ai~ll~~l 588 (1281)
+.+|.-++|+|||..|-++...+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 35889999999999988776655
No 281
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=48.69 E-value=15 Score=46.35 Aligned_cols=24 Identities=25% Similarity=0.156 Sum_probs=18.5
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHH
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTY 587 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~ 587 (1281)
..|.+|.-++|+|||..+=+++..
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345688999999999988766543
No 282
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=47.84 E-value=15 Score=48.88 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=39.4
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHCC
Q psy7773 568 ILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAP 619 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~p 619 (1281)
|+| ..|+|||.+.+.-+.+++.......++|+|||.....+-...+....+
T Consensus 6 V~a-gAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt~~~rl~~~l~ 56 (1166)
T 3u4q_B 6 LVG-RSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAKTPD 56 (1166)
T ss_dssp EEE-CTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHHHHHHHTCCSS
T ss_pred EEe-CCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHHHHHHHHHhhh
Confidence 444 489999999999999998775555799999998877666666655443
No 283
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=47.20 E-value=38 Score=37.70 Aligned_cols=55 Identities=18% Similarity=0.074 Sum_probs=34.6
Q ss_pred HHHHHHHH-hhcCCCCeEEecCCCCCHHHHHHHHHHHHHHh---cCCCCCEEEEeCCcc
Q psy7773 552 KGLEWMVS-LYNNNLNGILADEMGLGKTVQTIALLTYLMEK---KKNLGPYLVIVPLST 606 (1281)
Q Consensus 552 ~gv~~l~~-~~~~~~~gILademGlGKTi~ai~ll~~l~~~---~~~~~~~LIV~P~s~ 606 (1281)
.++..++. -+..+.-.+|+.+.|+|||..++.++...... .+..+++++|.-...
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 44555552 23344446889999999999988887654211 111457888877654
No 284
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=46.40 E-value=75 Score=30.92 Aligned_cols=81 Identities=15% Similarity=0.101 Sum_probs=55.5
Q ss_pred cchHHHHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHC----CCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEE
Q psy7773 871 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR----DFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLL 946 (1281)
Q Consensus 871 s~K~~~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~----g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~Ll 946 (1281)
..++.+..+++.+....|.||+|.|.....+..|-+.|... -++... .|.... ...+ ++|
T Consensus 22 ~~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~-~~~~~~------------~~~P---V~L 85 (150)
T 3sxu_A 22 SAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNL-AGEGPR------------GGAP---VEI 85 (150)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEE-TTCSST------------TCCS---EEE
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCcc-CCCCCC------------CCCC---EEE
Confidence 45788899999999999999999999999999999999754 234433 332220 1233 456
Q ss_pred eccccccccCcccCCEEEEeCCCC
Q psy7773 947 STRAGGLGLNLQAADTVIIFDSDW 970 (1281)
Q Consensus 947 sT~agg~GlNL~~ad~VI~~D~~w 970 (1281)
++... .+-..++++|+++..+
T Consensus 86 ~~~~~---~~~~~~~vLinL~~~~ 106 (150)
T 3sxu_A 86 AWPQK---RSSSRRDILISLRTSF 106 (150)
T ss_dssp ECTTS---CCCSCCSEEEECCSSC
T ss_pred eCCCC---CCCCcCCEEEECCCCC
Confidence 64321 1123577888888776
No 285
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=46.05 E-value=44 Score=46.35 Aligned_cols=52 Identities=13% Similarity=-0.033 Sum_probs=36.7
Q ss_pred cCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHC
Q psy7773 562 NNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWA 618 (1281)
Q Consensus 562 ~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~~~~ 618 (1281)
..+.+.+|.-++|+|||..|++++..... ..+.++++.....+..-. ..+|.
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~---~G~~v~Fi~~e~~~~~l~--a~~~G 1476 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY--ARKLG 1476 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHHH--HHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEEcccccCHHH--HHHcC
Confidence 34566789999999999999999877652 335788888776553322 44554
No 286
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=44.14 E-value=14 Score=43.67 Aligned_cols=40 Identities=28% Similarity=0.283 Sum_probs=28.6
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHH
Q psy7773 565 LNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLS 608 (1281)
Q Consensus 565 ~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~ 608 (1281)
.+.+|..++|+|||..|-++...+ +...+++.|....+..
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~l----~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQEL----GSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH----CTTSCEEEEEGGGGCC
T ss_pred CeEEEECCCcCCHHHHHHHHHHHh----CCCceEEEEeHHHHHH
Confidence 467899999999999998887765 2224666666555443
No 287
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=43.23 E-value=49 Score=37.35 Aligned_cols=40 Identities=15% Similarity=0.018 Sum_probs=29.5
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHH
Q psy7773 567 GILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSN 609 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~ 609 (1281)
.+|.-+.|+|||..++.++..+.. ..+++++|.+.....+
T Consensus 64 ~~I~GppGsGKSTLal~la~~~~~---~gg~VlyId~E~s~~~ 103 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAEAQK---MGGVAAFIDAEHALDP 103 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEecccccch
Confidence 467888999999998888877653 2367888887665533
No 288
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=43.01 E-value=58 Score=38.34 Aligned_cols=41 Identities=24% Similarity=0.283 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHH
Q psy7773 548 EYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLM 589 (1281)
Q Consensus 548 ~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~ 589 (1281)
+..+..+..++.. ....+.+|..++|+|||..+-+++..+.
T Consensus 186 ~~~i~~l~~~l~r-~~~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 186 SKEIQRVIEVLSR-RTKNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp HHHHHHHHHHHHC-SSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 3344434333332 3345678999999999999988777664
No 289
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=42.71 E-value=14 Score=39.43 Aligned_cols=25 Identities=28% Similarity=0.185 Sum_probs=21.4
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhc
Q psy7773 568 ILADEMGLGKTVQTIALLTYLMEKK 592 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~~~ 592 (1281)
|.+-++|.|||+++++++..+....
T Consensus 26 ItgT~t~vGKT~vs~gL~~~L~~~G 50 (242)
T 3qxc_A 26 ISATNTNAGKTTCARLLAQYCNACG 50 (242)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEeCCCCCcHHHHHHHHHHHHHhCC
Confidence 6688999999999999999887543
No 290
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=42.48 E-value=1.4e+02 Score=29.08 Aligned_cols=41 Identities=22% Similarity=0.218 Sum_probs=37.4
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhC
Q psy7773 168 SGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWR 208 (1281)
Q Consensus 168 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~ 208 (1281)
........+|+......|.+|+|+|.....+..|-+.|...
T Consensus 22 ~~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~ 62 (150)
T 3sxu_A 22 SAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWAR 62 (150)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCC
Confidence 45788899999999999999999999999999999999866
No 291
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=42.25 E-value=49 Score=38.49 Aligned_cols=34 Identities=35% Similarity=0.413 Sum_probs=24.0
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q psy7773 568 ILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVP 603 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P 603 (1281)
+++...|.|||.++..++.++....+ .++++|.-
T Consensus 104 ~ivG~~GvGKTT~a~~LA~~l~~~~G--~kVllvd~ 137 (433)
T 2xxa_A 104 LMAGLQGAGKTTSVGKLGKFLREKHK--KKVLVVSA 137 (433)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTSC--CCEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcC--CeEEEEec
Confidence 44567999999999999988864312 35555554
No 292
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=42.18 E-value=44 Score=37.48 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=40.2
Q ss_pred HHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHH
Q psy7773 552 KGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLE 613 (1281)
Q Consensus 552 ~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E 613 (1281)
..+..++.-+..+.-.||+..+|.|||.-++.++..+.. ...+++++..---..+....
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlEms~~ql~~R 92 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLEMSAEQLALR 92 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESSSCHHHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCCCCHHHHHHH
Confidence 445555544444545689999999999999888877664 33688888875444444433
No 293
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=41.68 E-value=14 Score=38.90 Aligned_cols=25 Identities=20% Similarity=0.335 Sum_probs=21.2
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhc
Q psy7773 568 ILADEMGLGKTVQTIALLTYLMEKK 592 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~~~ 592 (1281)
|.+-.+|.|||+++++++..+..++
T Consensus 9 Itgt~t~vGKT~vt~~L~~~l~~~G 33 (228)
T 3of5_A 9 IIGTDTEVGKTYISTKLIEVCEHQN 33 (228)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHHTT
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHCC
Confidence 5677899999999999999887554
No 294
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=41.41 E-value=22 Score=36.76 Aligned_cols=23 Identities=9% Similarity=0.290 Sum_probs=19.4
Q ss_pred CeEEecCCCCCHHHHHHHHHHHH
Q psy7773 566 NGILADEMGLGKTVQTIALLTYL 588 (1281)
Q Consensus 566 ~gILademGlGKTi~ai~ll~~l 588 (1281)
+.+++.++|+|||..+.+++..+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999998887765
No 295
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=40.69 E-value=33 Score=32.12 Aligned_cols=45 Identities=7% Similarity=0.083 Sum_probs=36.1
Q ss_pred EEEEeccHH-------HHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhc
Q psy7773 188 VLMFCQMTQ-------LMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFN 232 (1281)
Q Consensus 188 vlIFs~~~~-------~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~ 232 (1281)
|.||+...- --..+..+|...|+.|..++=+..++.|..+++..+
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 566664332 236788899999999999999999999999999984
No 296
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=40.54 E-value=37 Score=38.44 Aligned_cols=53 Identities=13% Similarity=-0.014 Sum_probs=35.8
Q ss_pred HHHHHHHH--hhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccH
Q psy7773 552 KGLEWMVS--LYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTL 607 (1281)
Q Consensus 552 ~gv~~l~~--~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l 607 (1281)
.++..++. -+..+...+|+.+.|+|||..++.++..+... .+++++|......
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~---g~~vlyid~E~s~ 103 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHAL 103 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCC
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCCc
Confidence 34555542 23344456889999999999999988877632 2478888775443
No 297
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=39.60 E-value=16 Score=39.10 Aligned_cols=25 Identities=28% Similarity=0.322 Sum_probs=21.4
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhc
Q psy7773 568 ILADEMGLGKTVQTIALLTYLMEKK 592 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~~~ 592 (1281)
|.+-++|.|||+++++++..+..+.
T Consensus 31 Itgt~t~vGKT~vt~gL~~~l~~~G 55 (251)
T 3fgn_A 31 VTGTGTGVGKTVVCAALASAARQAG 55 (251)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTT
T ss_pred EEeCCCCCcHHHHHHHHHHHHHHCC
Confidence 5678999999999999999887554
No 298
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=39.59 E-value=55 Score=35.85 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=22.4
Q ss_pred EecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q psy7773 569 LADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVP 603 (1281)
Q Consensus 569 LademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P 603 (1281)
+.-..|.|||..+..++..+... .+.++++.-
T Consensus 103 i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~ 134 (295)
T 1ls1_A 103 LVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAA 134 (295)
T ss_dssp EECCTTTTHHHHHHHHHHHHHHT---TCCEEEEEC
T ss_pred EECCCCCCHHHHHHHHHHHHHHc---CCeEEEecC
Confidence 44679999999888877766432 356666654
No 299
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=38.73 E-value=1.3e+02 Score=27.85 Aligned_cols=94 Identities=11% Similarity=-0.007 Sum_probs=47.2
Q ss_pred CCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcC--CCCCceEEEEeccccccC-CCCCCCCEEE
Q psy7773 185 KHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNE--PESKYFIFLLSTRAGGLG-LNLQAADTVI 261 (1281)
Q Consensus 185 ~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~--~~~~~~vll~st~~~~~G-lnL~~a~~vi 261 (1281)
|-.|..++.....+..+ ....+.++.++-.++...-..++...+. ....+.|++++....... .....+...-
T Consensus 31 g~~v~~~~~~~~a~~~l----~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~ 106 (142)
T 3cg4_A 31 GFHIISADSGGQCIDLL----KKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVD 106 (142)
T ss_dssp TCEEEEESSHHHHHHHH----HTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEE
T ss_pred CeEEEEeCCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccE
Confidence 45555544444433333 3445667777655543333344444432 223456666665432221 1222333344
Q ss_pred EeCCCCCcchhhHHhHhhhhc
Q psy7773 262 IFDSDWNPHQDLQAQDRAHRI 282 (1281)
Q Consensus 262 ~~d~~wnp~~~~Qa~gR~~R~ 282 (1281)
++.-|.++....+++.++.+.
T Consensus 107 ~l~kp~~~~~l~~~i~~~~~~ 127 (142)
T 3cg4_A 107 YITKPFDNEDLIEKTTFFMGF 127 (142)
T ss_dssp EEESSCCHHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHH
Confidence 455677888888777776654
No 300
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=38.63 E-value=39 Score=31.61 Aligned_cols=45 Identities=7% Similarity=0.083 Sum_probs=36.5
Q ss_pred EEEEechHH-------HHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhc
Q psy7773 891 VLMFCQMTQ-------LMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFN 935 (1281)
Q Consensus 891 vLIFsq~~~-------~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn 935 (1281)
|.||+.... -...+..+|..+|++|..++=++..+.|..+.+..+
T Consensus 2 V~vYtt~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp EEEEECTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred EEEEecCCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 556655432 236788899999999999999999999999999983
No 301
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=38.60 E-value=1.7e+02 Score=26.83 Aligned_cols=94 Identities=11% Similarity=-0.007 Sum_probs=45.9
Q ss_pred CCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcC--CCCCeEEEEEeccccccc-cCcccCCEEE
Q psy7773 888 KHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNE--PESKYFIFLLSTRAGGLG-LNLQAADTVI 964 (1281)
Q Consensus 888 ~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~--~~~~~~v~LlsT~agg~G-lNL~~ad~VI 964 (1281)
|..|..++.....+..+ ....+..+.++-.++...-..++...+. ....+.|++++......- .....+...-
T Consensus 31 g~~v~~~~~~~~a~~~l----~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~ 106 (142)
T 3cg4_A 31 GFHIISADSGGQCIDLL----KKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVD 106 (142)
T ss_dssp TCEEEEESSHHHHHHHH----HTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEE
T ss_pred CeEEEEeCCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccE
Confidence 55565555554444433 3345666667655544333344444432 233455656654432211 1111222223
Q ss_pred EeCCCCChhhhhhHhHhHHhh
Q psy7773 965 IFDSDWNPHQDLQAQDRAHRI 985 (1281)
Q Consensus 965 ~~D~~wnp~~~~Qa~gR~~Ri 985 (1281)
++.-|.++....+++.++.+.
T Consensus 107 ~l~kp~~~~~l~~~i~~~~~~ 127 (142)
T 3cg4_A 107 YITKPFDNEDLIEKTTFFMGF 127 (142)
T ss_dssp EEESSCCHHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHH
Confidence 334577777777777776543
No 302
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=38.48 E-value=76 Score=30.00 Aligned_cols=83 Identities=11% Similarity=-0.014 Sum_probs=40.9
Q ss_pred cEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEEe
Q psy7773 622 NVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLL 701 (1281)
Q Consensus 622 ~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllL 701 (1281)
++++.......+..+............+.+..........+....+++||+|=.-- ......+.+.++..+.....+++
T Consensus 22 ~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlii~D~~l~-~~~g~~~~~~l~~~~~~~~ii~l 100 (150)
T 4e7p_A 22 KVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMP-VKTGLEVLEWIRSEKLETKVVVV 100 (150)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSCCSEEEECSSCS-SSCHHHHHHHHHHTTCSCEEEEE
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccCCCEEEEeCCCC-CCcHHHHHHHHHHhCCCCeEEEE
Confidence 44555555555444443333222112222222222223344556789999994321 22233455566655455667888
Q ss_pred ecCC
Q psy7773 702 TGTP 705 (1281)
Q Consensus 702 TgTP 705 (1281)
|+.+
T Consensus 101 s~~~ 104 (150)
T 4e7p_A 101 TTFK 104 (150)
T ss_dssp ESCC
T ss_pred eCCC
Confidence 8875
No 303
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=38.25 E-value=45 Score=34.87 Aligned_cols=50 Identities=14% Similarity=0.043 Sum_probs=34.2
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHH
Q psy7773 563 NNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFE 615 (1281)
Q Consensus 563 ~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E~~ 615 (1281)
.+.-.+|+.+.|+|||..++.++..+... .++++++.-.....++...+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~~e~~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVALEEHPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEESSSCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccCCHHHHHHHHH
Confidence 34445788899999999988888776532 357888876655555444443
No 304
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=38.15 E-value=1.3e+02 Score=27.41 Aligned_cols=97 Identities=8% Similarity=-0.091 Sum_probs=55.3
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCC--CCCceEEEEeccccccCCCCCCCCEEE
Q psy7773 184 TKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEP--ESKYFIFLLSTRAGGLGLNLQAADTVI 261 (1281)
Q Consensus 184 ~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~--~~~~~vll~st~~~~~GlnL~~a~~vi 261 (1281)
.+-.+..++.....+..+ ....+..+.++-.++...-..++...+.. ...+.|++++......-.....+...-
T Consensus 26 ~~~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~ 101 (133)
T 3nhm_A 26 GEFDCTTAADGASGLQQA----LAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDA 101 (133)
T ss_dssp TTSEEEEESSHHHHHHHH----HHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSE
T ss_pred CCcEEEEECCHHHHHHHH----hcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCce
Confidence 556677666655555444 44568888888776654455555555432 124567777754322222222222222
Q ss_pred EeCCCCCcchhhHHhHhhhhcCC
Q psy7773 262 IFDSDWNPHQDLQAQDRAHRIGQ 284 (1281)
Q Consensus 262 ~~d~~wnp~~~~Qa~gR~~R~Gq 284 (1281)
++--|+++....+++.++-+-+.
T Consensus 102 ~l~KP~~~~~l~~~i~~~l~~~~ 124 (133)
T 3nhm_A 102 YLVKPVKPPVLIAQLHALLARAE 124 (133)
T ss_dssp EEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEeccCCHHHHHHHHHHHHhhhc
Confidence 44568899999999988866543
No 305
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=37.76 E-value=42 Score=31.98 Aligned_cols=42 Identities=5% Similarity=0.059 Sum_probs=23.9
Q ss_pred ccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEEeecCC
Q psy7773 663 SKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLTGTP 705 (1281)
Q Consensus 663 ~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllLTgTP 705 (1281)
....+++||+|=.- -......+.+.++........+++|+.+
T Consensus 58 ~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 99 (152)
T 3eul_A 58 KAHLPDVALLDYRM-PGMDGAQVAAAVRSYELPTRVLLISAHD 99 (152)
T ss_dssp HHHCCSEEEEETTC-SSSCHHHHHHHHHHTTCSCEEEEEESCC
T ss_pred HhcCCCEEEEeCCC-CCCCHHHHHHHHHhcCCCCeEEEEEccC
Confidence 33467889998432 1122334555565554455677888764
No 306
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=37.67 E-value=93 Score=28.41 Aligned_cols=96 Identities=17% Similarity=0.084 Sum_probs=53.2
Q ss_pred CCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccc-----ccc-CcccCC
Q psy7773 888 KHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGG-----LGL-NLQAAD 961 (1281)
Q Consensus 888 ~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg-----~Gl-NL~~ad 961 (1281)
+..|..++.....+.. +... +..+.+|-.++...-..++..+........|+++|..... ..+ ....+.
T Consensus 27 ~~~v~~~~~~~~~~~~----~~~~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g 101 (135)
T 3eqz_A 27 FGNVEAFQHPRAFLTL----SLNK-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLN 101 (135)
T ss_dssp CSCEEEESCHHHHTTS----CCCT-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCE
T ss_pred cceeeeecCHHHHHHh----hccC-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCC
Confidence 4445555554443332 2223 6777788777766666666666543344556666654431 111 112233
Q ss_pred EEEEeCCCCChhhhhhHhHhHHhhCCC
Q psy7773 962 TVIIFDSDWNPHQDLQAQDRAHRIGQK 988 (1281)
Q Consensus 962 ~VI~~D~~wnp~~~~Qa~gR~~RiGQ~ 988 (1281)
..-++.-|.++....+++.++...++.
T Consensus 102 ~~~~l~KP~~~~~l~~~l~~~~~~~~~ 128 (135)
T 3eqz_A 102 VINTFTKPINTEVLTCFLTSLSNRQAE 128 (135)
T ss_dssp EEEEEESSCCHHHHHHHHHHHSCCC--
T ss_pred cceeeCCCCCHHHHHHHHHHHHhhccc
Confidence 334455788999999988888765543
No 307
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=37.59 E-value=1.8e+02 Score=29.64 Aligned_cols=93 Identities=17% Similarity=0.171 Sum_probs=57.3
Q ss_pred ccCcHHHHHH-HHHHHhhh--CCCeEEEEeccHHHHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHhcCCCCC
Q psy7773 166 RTSGKFELLD-RILPKFKE--TKHRVLMFCQMTQLMTILEDYFIWR-----DFSYLRLDGTTKSEDRGELLRKFNEPESK 237 (1281)
Q Consensus 166 ~~s~K~~~L~-~ll~~~~~--~~~kvlIFs~~~~~~~~l~~~l~~~-----g~~~~~~~g~~~~~~R~~~i~~F~~~~~~ 237 (1281)
..+||..... -++..+.. .+.++||.+.....+..+...+... ++.+..++|+.+.......+..- .
T Consensus 60 TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~---~-- 134 (220)
T 1t6n_A 60 SGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKN---C-- 134 (220)
T ss_dssp TTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHS---C--
T ss_pred CCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcC---C--
Confidence 3588876543 33333332 2348999999887776666555443 78999999999876655444331 2
Q ss_pred ceEEEEecccc-----ccCCCCCCCCEEEEe
Q psy7773 238 YFIFLLSTRAG-----GLGLNLQAADTVIIF 263 (1281)
Q Consensus 238 ~~vll~st~~~-----~~GlnL~~a~~vi~~ 263 (1281)
+.|+++++... ...+++...+.||+=
T Consensus 135 ~~i~v~T~~~l~~~~~~~~~~~~~~~~lViD 165 (220)
T 1t6n_A 135 PHIVVGTPGRILALARNKSLNLKHIKHFILD 165 (220)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred CCEEEeCHHHHHHHHHhCCCCcccCCEEEEc
Confidence 34667766543 234566666666653
No 308
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=37.37 E-value=72 Score=29.19 Aligned_cols=18 Identities=6% Similarity=-0.045 Sum_probs=9.6
Q ss_pred CCCChhhhhhHhHhHHhh
Q psy7773 968 SDWNPHQDLQAQDRAHRI 985 (1281)
Q Consensus 968 ~~wnp~~~~Qa~gR~~Ri 985 (1281)
-|+++....+++.++.+-
T Consensus 108 kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 108 KPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp SSCCHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHcCC
Confidence 455555555555555543
No 309
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=36.73 E-value=52 Score=34.91 Aligned_cols=36 Identities=19% Similarity=0.200 Sum_probs=24.2
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCc
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLS 605 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s 605 (1281)
..+.+|.-++|+|||..+-++...+ ..|++.|-...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~------~~~~~~i~~~~ 80 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA------KVPFFTISGSD 80 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH------TCCEEEECSCS
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc------CCCEEEEeHHH
Confidence 3456889999999998887766543 13555554443
No 310
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=36.56 E-value=99 Score=28.11 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=23.9
Q ss_pred cccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEEeecCC
Q psy7773 662 LSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLTGTP 705 (1281)
Q Consensus 662 l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllLTgTP 705 (1281)
+....+++||+|=. --......+.+.++........+++|+.+
T Consensus 47 l~~~~~dlvi~d~~-l~~~~g~~~~~~l~~~~~~~~ii~~t~~~ 89 (130)
T 3eod_A 47 LGGFTPDLMICDIA-MPRMNGLKLLEHIRNRGDQTPVLVISATE 89 (130)
T ss_dssp HTTCCCSEEEECCC------CHHHHHHHHHTTCCCCEEEEECCC
T ss_pred HhcCCCCEEEEecC-CCCCCHHHHHHHHHhcCCCCCEEEEEcCC
Confidence 34456888888832 11122334455565544556678888875
No 311
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=36.47 E-value=99 Score=27.49 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=42.6
Q ss_pred EEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCC
Q psy7773 188 VLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEP 234 (1281)
Q Consensus 188 vlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~ 234 (1281)
.+|||.-...+..|-..++..|+.++.+.+......|..-+..|...
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekq 51 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQ 51 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTT
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHc
Confidence 58999999999999999999999999999999999999999999763
No 312
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=36.09 E-value=17 Score=40.59 Aligned_cols=26 Identities=23% Similarity=0.209 Sum_probs=20.7
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHH
Q psy7773 563 NNLNGILADEMGLGKTVQTIALLTYL 588 (1281)
Q Consensus 563 ~~~~gILademGlGKTi~ai~ll~~l 588 (1281)
.+.+.+|..++|+|||..+-++...+
T Consensus 45 ~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 46688999999999998887765443
No 313
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=35.80 E-value=1.5e+02 Score=26.85 Aligned_cols=95 Identities=9% Similarity=-0.052 Sum_probs=56.9
Q ss_pred cCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCC--CCCeEEEEEeccccccccCcc--cCCE
Q psy7773 887 TKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEP--ESKYFIFLLSTRAGGLGLNLQ--AADT 962 (1281)
Q Consensus 887 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~--~~~~~v~LlsT~agg~GlNL~--~ad~ 962 (1281)
.+..|..++.....+..+ ....+..+.+|-.++...-..++...+.. ...+.|+++|......-.... +|+.
T Consensus 26 ~~~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~~ 101 (133)
T 3nhm_A 26 GEFDCTTAADGASGLQQA----LAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDA 101 (133)
T ss_dssp TTSEEEEESSHHHHHHHH----HHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCSE
T ss_pred CCcEEEEECCHHHHHHHH----hcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCce
Confidence 566787777776666554 34578888888777665555566555432 224556666654322212211 2444
Q ss_pred EEEeCCCCChhhhhhHhHhHHhhCC
Q psy7773 963 VIIFDSDWNPHQDLQAQDRAHRIGQ 987 (1281)
Q Consensus 963 VI~~D~~wnp~~~~Qa~gR~~RiGQ 987 (1281)
+ +--|+++....+++.++-+-+.
T Consensus 102 ~--l~KP~~~~~l~~~i~~~l~~~~ 124 (133)
T 3nhm_A 102 Y--LVKPVKPPVLIAQLHALLARAE 124 (133)
T ss_dssp E--EESSCCHHHHHHHHHHHHHHHC
T ss_pred E--EeccCCHHHHHHHHHHHHhhhc
Confidence 3 3368999999999998866443
No 314
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=35.40 E-value=1.1e+02 Score=28.22 Aligned_cols=82 Identities=12% Similarity=-0.039 Sum_probs=44.1
Q ss_pred CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCcccc--ccchHHHHHHHhhhccCcE
Q psy7773 621 ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMK--NHHCKLTQTLNTFYNSSHR 698 (1281)
Q Consensus 621 ~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~k--n~~s~~~~~l~~~~~~~~r 698 (1281)
.++++.......+..+.......++.|..++ ........+....+++||+|=.- -. .....+.+.++........
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~--~~~~a~~~l~~~~~dlvi~D~~l-~~~~~~g~~~~~~l~~~~~~~~i 83 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSPLDVTIQCFA--SAESFMRQQISDDAIGMIIEAHL-EDKKDSGIELLETLVKRGFHLPT 83 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSSEEEEES--SHHHHTTSCCCTTEEEEEEETTG-GGBTTHHHHHHHHHHHTTCCCCE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCcEEEEeC--CHHHHHHHHhccCCCEEEEeCcC-CCCCccHHHHHHHHHhCCCCCCE
Confidence 3455555555555555444444456555332 22223344556679999999432 11 2233445555554445567
Q ss_pred EEeecCC
Q psy7773 699 VLLTGTP 705 (1281)
Q Consensus 699 llLTgTP 705 (1281)
+++|+.+
T Consensus 84 i~~s~~~ 90 (136)
T 3kto_A 84 IVMASSS 90 (136)
T ss_dssp EEEESSC
T ss_pred EEEEcCC
Confidence 8888864
No 315
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=35.33 E-value=74 Score=29.72 Aligned_cols=44 Identities=14% Similarity=0.212 Sum_probs=24.1
Q ss_pred ccccCceeEEEEeCCccccccchHHHHHHHh--hhccCcEEEeecCC
Q psy7773 661 VLSKIQWKCMIIDEGHRMKNHHCKLTQTLNT--FYNSSHRVLLTGTP 705 (1281)
Q Consensus 661 ~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~--~~~~~~rllLTgTP 705 (1281)
.+....+++||+|=.- -......+.+.++. .......+++|+.+
T Consensus 46 ~l~~~~~dlii~D~~l-~~~~g~~~~~~lr~~~~~~~~pii~~s~~~ 91 (144)
T 3kht_A 46 QVQQAKYDLIILDIGL-PIANGFEVMSAVRKPGANQHTPIVILTDNV 91 (144)
T ss_dssp HHTTCCCSEEEECTTC-GGGCHHHHHHHHHSSSTTTTCCEEEEETTC
T ss_pred HhhcCCCCEEEEeCCC-CCCCHHHHHHHHHhcccccCCCEEEEeCCC
Confidence 3445568899998432 11223344555554 22345577888754
No 316
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=35.32 E-value=62 Score=29.44 Aligned_cols=104 Identities=9% Similarity=-0.040 Sum_probs=58.4
Q ss_pred HHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCC--CCCeEEEEEecccccc
Q psy7773 876 LLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEP--ESKYFIFLLSTRAGGL 953 (1281)
Q Consensus 876 ~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~--~~~~~v~LlsT~agg~ 953 (1281)
.|..+|.. .|..|..++.....+..+ ....+..+.+|-.++...-..++...+.. ...+.|+++|......
T Consensus 18 ~l~~~L~~---~g~~v~~~~~~~~a~~~l----~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~ 90 (127)
T 3i42_A 18 TFKELLEM---LGFQADYVMSGTDALHAM----STRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKND 90 (127)
T ss_dssp HHHHHHHH---TTEEEEEESSHHHHHHHH----HHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTT
T ss_pred HHHHHHHH---cCCCEEEECCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchh
Confidence 34444433 356677777666665554 34568888888776655555555555432 3445566666543322
Q ss_pred ccCc--ccCCEEEEeCCCCChhhhhhHhHhHHhhCCC
Q psy7773 954 GLNL--QAADTVIIFDSDWNPHQDLQAQDRAHRIGQK 988 (1281)
Q Consensus 954 GlNL--~~ad~VI~~D~~wnp~~~~Qa~gR~~RiGQ~ 988 (1281)
-... .+|+.+ +--|.++....+++.++++-+..
T Consensus 91 ~~~~~~~g~~~~--l~KP~~~~~L~~~i~~~~~~~~~ 125 (127)
T 3i42_A 91 LGKEACELFDFY--LEKPIDIASLEPILQSIEGHHHH 125 (127)
T ss_dssp CCHHHHHHCSEE--EESSCCHHHHHHHHHHHC-----
T ss_pred HHHHHHHhhHHh--eeCCCCHHHHHHHHHHhhccCCC
Confidence 1111 124543 44688999999999988775543
No 317
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=35.23 E-value=1.1e+02 Score=27.11 Aligned_cols=48 Identities=13% Similarity=0.209 Sum_probs=43.5
Q ss_pred EEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCC
Q psy7773 891 VLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPE 938 (1281)
Q Consensus 891 vLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~ 938 (1281)
.+|||.-...+..+...+...|..++.+.+......|...+..|....
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqg 52 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQG 52 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTT
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcC
Confidence 689999999999999999999999999999999999999999998643
No 318
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=35.11 E-value=96 Score=28.42 Aligned_cols=40 Identities=8% Similarity=0.011 Sum_probs=23.1
Q ss_pred CceeEEEEeCCccccccchHHHHHHHhhh--ccCcEEEeecCC
Q psy7773 665 IQWKCMIIDEGHRMKNHHCKLTQTLNTFY--NSSHRVLLTGTP 705 (1281)
Q Consensus 665 ~~w~~vIvDEaHr~kn~~s~~~~~l~~~~--~~~~rllLTgTP 705 (1281)
..+++||+|-.-- ......+.+.++... .....+++|+.+
T Consensus 54 ~~~dlvi~d~~~~-~~~g~~~~~~l~~~~~~~~~pii~ls~~~ 95 (140)
T 1k68_A 54 SRPDLILLXLNLP-KKDGREVLAEIKSDPTLKRIPVVVLSTSI 95 (140)
T ss_dssp CCCSEEEECSSCS-SSCHHHHHHHHHHSTTGGGSCEEEEESCC
T ss_pred CCCcEEEEecCCC-cccHHHHHHHHHcCcccccccEEEEecCC
Confidence 5689999994322 122334455555542 344577888764
No 319
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=34.90 E-value=71 Score=38.37 Aligned_cols=25 Identities=28% Similarity=0.200 Sum_probs=19.2
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHH
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYL 588 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l 588 (1281)
+...+|.-++|+|||..+-++...+
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4456789999999998877666554
No 320
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=34.80 E-value=1.9e+02 Score=30.02 Aligned_cols=91 Identities=13% Similarity=0.048 Sum_probs=57.0
Q ss_pred ccCcHHHH-HHHHHHHhh-------hCCCeEEEEeccHHHHHHH----HHHHHhCCCcEEEecCCCCHHHHHHHHHHhcC
Q psy7773 166 RTSGKFEL-LDRILPKFK-------ETKHRVLMFCQMTQLMTIL----EDYFIWRDFSYLRLDGTTKSEDRGELLRKFNE 233 (1281)
Q Consensus 166 ~~s~K~~~-L~~ll~~~~-------~~~~kvlIFs~~~~~~~~l----~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~ 233 (1281)
..|||..+ +.-++..+. ..+.++||.+.....+..+ ...+...|+.+..+.|+.+.......+..
T Consensus 75 TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--- 151 (242)
T 3fe2_A 75 TGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER--- 151 (242)
T ss_dssp TTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH---
T ss_pred CcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC---
Confidence 45899765 444554443 2466799999888655544 44445568999999999987655544432
Q ss_pred CCCCceEEEEeccccc-----cCCCCCCCCEEEE
Q psy7773 234 PESKYFIFLLSTRAGG-----LGLNLQAADTVII 262 (1281)
Q Consensus 234 ~~~~~~vll~st~~~~-----~GlnL~~a~~vi~ 262 (1281)
.+.|+++++.... ..+++.....+|+
T Consensus 152 ---~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 152 ---GVEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp ---CCSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred ---CCCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 1346777764432 2345666666654
No 321
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=34.39 E-value=70 Score=35.36 Aligned_cols=36 Identities=17% Similarity=0.059 Sum_probs=24.5
Q ss_pred HHHHHHHH-hhcCCCCeEEecCCCCCHHHHHHHHHHH
Q psy7773 552 KGLEWMVS-LYNNNLNGILADEMGLGKTVQTIALLTY 587 (1281)
Q Consensus 552 ~gv~~l~~-~~~~~~~gILademGlGKTi~ai~ll~~ 587 (1281)
.++.+++. -+..+.-.+|+-+.|+|||..++.++..
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44555552 2233344578999999999998888765
No 322
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=33.69 E-value=42 Score=29.82 Aligned_cols=89 Identities=11% Similarity=0.069 Sum_probs=44.3
Q ss_pred cCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCC--CCeEEEEEeccccccccCcc--cCCE
Q psy7773 887 TKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPE--SKYFIFLLSTRAGGLGLNLQ--AADT 962 (1281)
Q Consensus 887 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~--~~~~v~LlsT~agg~GlNL~--~ad~ 962 (1281)
.|..|..++.....+..+.. ..+..+.++-.++...-..++....... ..+.+++++...... ... +++.
T Consensus 24 ~g~~v~~~~~~~~~~~~l~~----~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~--~~~~~g~~~ 97 (119)
T 2j48_A 24 AGFKVIWLVDGSTALDQLDL----LQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD--PLLTAQASA 97 (119)
T ss_dssp TTCEEEEESCHHHHHHHHHH----HCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS--HHHHHHCSE
T ss_pred CCcEEEEecCHHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch--hhhhcCHHH
Confidence 45667666665555554433 3566777776554433334444443211 233344555433222 211 2333
Q ss_pred EEEeCCCCChhhhhhHhHhHH
Q psy7773 963 VIIFDSDWNPHQDLQAQDRAH 983 (1281)
Q Consensus 963 VI~~D~~wnp~~~~Qa~gR~~ 983 (1281)
+ +..|.++....+++.++.
T Consensus 98 ~--l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 98 I--LSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp E--CSSCSTTHHHHHHHHTTC
T ss_pred h--ccCCCCHHHHHHHHHHHh
Confidence 3 345777777777766553
No 323
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=33.21 E-value=2.2e+02 Score=29.82 Aligned_cols=91 Identities=21% Similarity=0.183 Sum_probs=55.6
Q ss_pred ccCcHHHH-HHHHHHHhhhC--CCeEEEEeccHHHHHHHHHHH----HhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCc
Q psy7773 166 RTSGKFEL-LDRILPKFKET--KHRVLMFCQMTQLMTILEDYF----IWRDFSYLRLDGTTKSEDRGELLRKFNEPESKY 238 (1281)
Q Consensus 166 ~~s~K~~~-L~~ll~~~~~~--~~kvlIFs~~~~~~~~l~~~l----~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~ 238 (1281)
..|||... +.-++..+... +.++||.+..+..+..+...+ ...|+.+..+.|+.+.......+ .. .+
T Consensus 89 TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~---~~ 162 (249)
T 3ber_A 89 TGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL---AK---KP 162 (249)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH---HT---CC
T ss_pred CCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh---cC---CC
Confidence 35899765 34444444433 457999998887655555444 34488999999998865443333 22 23
Q ss_pred eEEEEecccc------ccCCCCCCCCEEEE
Q psy7773 239 FIFLLSTRAG------GLGLNLQAADTVII 262 (1281)
Q Consensus 239 ~vll~st~~~------~~GlnL~~a~~vi~ 262 (1281)
.|+++++... ..++++...+.||+
T Consensus 163 ~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 163 HIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp SEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred CEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 4667765543 23466666666665
No 324
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=33.14 E-value=46 Score=36.37 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=24.3
Q ss_pred CeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe
Q psy7773 566 NGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIV 602 (1281)
Q Consensus 566 ~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~ 602 (1281)
+.+|.-++|+|||..+-++...+. ...++++.+-
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~---~~~~~~~~~~ 82 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLF---DTEEAMIRID 82 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHH---SCGGGEEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHHHHc---CCCcceEEee
Confidence 468899999999999887776654 2234665554
No 325
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=32.86 E-value=40 Score=29.96 Aligned_cols=91 Identities=12% Similarity=0.068 Sum_probs=42.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCC--CCceEEEEeccccccCCCCCCCCEEE
Q psy7773 184 TKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPE--SKYFIFLLSTRAGGLGLNLQAADTVI 261 (1281)
Q Consensus 184 ~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~--~~~~vll~st~~~~~GlnL~~a~~vi 261 (1281)
.|-.+..++.....+..+.. ..+..+.++-.++...-..++...+... ..+.|++++...... ....+...-
T Consensus 24 ~g~~v~~~~~~~~~~~~l~~----~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~--~~~~~g~~~ 97 (119)
T 2j48_A 24 AGFKVIWLVDGSTALDQLDL----LQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD--PLLTAQASA 97 (119)
T ss_dssp TTCEEEEESCHHHHHHHHHH----HCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS--HHHHHHCSE
T ss_pred CCcEEEEecCHHHHHHHHHh----cCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch--hhhhcCHHH
Confidence 45566655554444444433 3456666665544322333344333211 234455555433222 211122223
Q ss_pred EeCCCCCcchhhHHhHhhh
Q psy7773 262 IFDSDWNPHQDLQAQDRAH 280 (1281)
Q Consensus 262 ~~d~~wnp~~~~Qa~gR~~ 280 (1281)
++.-|.++....+++.++.
T Consensus 98 ~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 98 ILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp ECSSCSTTHHHHHHHHTTC
T ss_pred hccCCCCHHHHHHHHHHHh
Confidence 4455677777777766654
No 326
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=32.60 E-value=1.5e+02 Score=30.57 Aligned_cols=90 Identities=14% Similarity=0.070 Sum_probs=57.2
Q ss_pred ccCcHHHH-HHHHHHHhh--hCCCeEEEEeccHHHHHHHHHHHHhC-----CCcEEEecCCCCHHHHHHHHHHhcCCCCC
Q psy7773 166 RTSGKFEL-LDRILPKFK--ETKHRVLMFCQMTQLMTILEDYFIWR-----DFSYLRLDGTTKSEDRGELLRKFNEPESK 237 (1281)
Q Consensus 166 ~~s~K~~~-L~~ll~~~~--~~~~kvlIFs~~~~~~~~l~~~l~~~-----g~~~~~~~g~~~~~~R~~~i~~F~~~~~~ 237 (1281)
..+||... +.-++..+. ..+.++||.+.....+..+...+... ++.+..+.|+.+...+...+ . .
T Consensus 70 TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~----~ 142 (230)
T 2oxc_A 70 SGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL---K----K 142 (230)
T ss_dssp TTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT---T----S
T ss_pred CCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc---c----C
Confidence 35899865 455555543 24578999999887776666666543 78889999999876554432 2 2
Q ss_pred ceEEEEeccccc-----cCCCCCCCCEEEE
Q psy7773 238 YFIFLLSTRAGG-----LGLNLQAADTVII 262 (1281)
Q Consensus 238 ~~vll~st~~~~-----~GlnL~~a~~vi~ 262 (1281)
+.|+++++...- ..+++...+.||+
T Consensus 143 ~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 143 CHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp CSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred CCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 447777765432 2345555555554
No 327
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=32.50 E-value=1.5e+02 Score=27.52 Aligned_cols=63 Identities=13% Similarity=0.141 Sum_probs=40.5
Q ss_pred CeEEEEec------cHHHHHHHHHHHHhCCC-cEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccc
Q psy7773 186 HRVLMFCQ------MTQLMTILEDYFIWRDF-SYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGG 249 (1281)
Q Consensus 186 ~kvlIFs~------~~~~~~~l~~~l~~~g~-~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~ 249 (1281)
.+||||+. +..+-......|...|+ +|..++=...++-|+.+...- ....-.+|||-..-.||
T Consensus 20 ~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~~~s-g~~TvPqIFI~g~~IGG 89 (118)
T 2wul_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYS-NWPTIPQVYLNGEFVGG 89 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHHHHHH-TCCSSCEEEETTEEEEC
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHHHHhc-cCCCCCeEeECCEEECC
Confidence 68999975 35566677777888888 577777666666666655544 44554556554443443
No 328
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=31.96 E-value=61 Score=45.02 Aligned_cols=57 Identities=12% Similarity=-0.034 Sum_probs=42.8
Q ss_pred HHHHHHHH--hhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHH
Q psy7773 552 KGLEWMVS--LYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWV 611 (1281)
Q Consensus 552 ~gv~~l~~--~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~ 611 (1281)
..+.+++. -+..+...+|+.++|+|||.-++.++..+.. ..+++++|.-.....+|.
T Consensus 718 ~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~---~g~~VlyiS~Ees~~ql~ 776 (2050)
T 3cmu_A 718 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY 776 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHHH
T ss_pred hHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEECCCcHHHHH
Confidence 45666664 3445555689999999999999988877652 245899998888888885
No 329
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=31.95 E-value=2.3e+02 Score=25.87 Aligned_cols=97 Identities=15% Similarity=0.109 Sum_probs=57.4
Q ss_pred cCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcC--CCCCeEEEEEecccccccc--CcccCCE
Q psy7773 887 TKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNE--PESKYFIFLLSTRAGGLGL--NLQAADT 962 (1281)
Q Consensus 887 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~--~~~~~~v~LlsT~agg~Gl--NL~~ad~ 962 (1281)
.|..|..+......+..+ ....+..+.+|-.++...-..++..++. ....+.|++++......-+ ....+..
T Consensus 29 ~g~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~ 104 (140)
T 3grc_A 29 GGFDSDMVHSAAQALEQV----ARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAV 104 (140)
T ss_dssp TTCEEEEECSHHHHHHHH----HHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCC
T ss_pred CCCeEEEECCHHHHHHHH----HhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCC
Confidence 466677777666655544 4456788888877666555666666654 2344566666654322111 2222222
Q ss_pred EEEeCCCCChhhhhhHhHhHHhhCC
Q psy7773 963 VIIFDSDWNPHQDLQAQDRAHRIGQ 987 (1281)
Q Consensus 963 VI~~D~~wnp~~~~Qa~gR~~RiGQ 987 (1281)
.-++--|.++....+++.++.+-+.
T Consensus 105 ~~~l~kP~~~~~l~~~i~~~l~~~~ 129 (140)
T 3grc_A 105 STWLEKPIDENLLILSLHRAIDNMA 129 (140)
T ss_dssp CEEECSSCCHHHHHHHHHHHHHHHC
T ss_pred CEEEeCCCCHHHHHHHHHHHHHhcC
Confidence 2334568899999998888866443
No 330
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=31.83 E-value=55 Score=30.56 Aligned_cols=50 Identities=10% Similarity=0.168 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhhhCC-CeEEEEec-cHHHHHHHHHHHHhCCCcEEEecCCCC
Q psy7773 170 KFELLDRILPKFKETK-HRVLMFCQ-MTQLMTILEDYFIWRDFSYLRLDGTTK 220 (1281)
Q Consensus 170 K~~~L~~ll~~~~~~~-~kvlIFs~-~~~~~~~l~~~l~~~g~~~~~~~g~~~ 220 (1281)
++..+...+..+. .+ .+|||||. ...........|...|+.+..++|++.
T Consensus 74 ~~~~~~~~~~~~~-~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 74 KLKDIYLQAAELA-LNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp GHHHHHHHHHHHH-TTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred cHHHHHHHHHHhc-cCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 4444544454443 44 78999994 555566778888999998889999875
No 331
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=31.41 E-value=76 Score=36.72 Aligned_cols=33 Identities=27% Similarity=0.282 Sum_probs=23.3
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q psy7773 568 ILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVP 603 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P 603 (1281)
+++-..|+|||..+..++.++... .++++++.-
T Consensus 102 ~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~ 134 (425)
T 2ffh_A 102 FLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAA 134 (425)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeec
Confidence 345679999999998888776522 356666654
No 332
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=31.36 E-value=93 Score=28.84 Aligned_cols=79 Identities=13% Similarity=0.212 Sum_probs=40.4
Q ss_pred cEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccc-cchHHHHHHHhhhccCcEEE
Q psy7773 622 NVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKN-HHCKLTQTLNTFYNSSHRVL 700 (1281)
Q Consensus 622 ~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn-~~s~~~~~l~~~~~~~~rll 700 (1281)
+++++......+..+.......++.|..++- .......+....+++||+|- +.+ ....+.+.+...+.....++
T Consensus 6 ~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~--~~~a~~~l~~~~~dlvi~d~---~~~~~g~~~~~~l~~~~~~~pii~ 80 (142)
T 2qxy_A 6 TVMVVDESRITFLAVKNALEKDGFNVIWAKN--EQEAFTFLRREKIDLVFVDV---FEGEESLNLIRRIREEFPDTKVAV 80 (142)
T ss_dssp EEEEECSCHHHHHHHHHHHGGGTCEEEEESS--HHHHHHHHTTSCCSEEEEEC---TTTHHHHHHHHHHHHHCTTCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEECC--HHHHHHHHhccCCCEEEEeC---CCCCcHHHHHHHHHHHCCCCCEEE
Confidence 4455555555554444444334455543321 11222334445789999996 322 22234455554434556778
Q ss_pred eecCC
Q psy7773 701 LTGTP 705 (1281)
Q Consensus 701 LTgTP 705 (1281)
+|+.+
T Consensus 81 ls~~~ 85 (142)
T 2qxy_A 81 LSAYV 85 (142)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 88764
No 333
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=31.18 E-value=65 Score=33.05 Aligned_cols=42 Identities=26% Similarity=0.382 Sum_probs=29.3
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe--CCccHHHHHHH
Q psy7773 568 ILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIV--PLSTLSNWVLE 613 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~--P~s~l~~W~~E 613 (1281)
|...--|.|||..++.+...+... . ++|+|= |...+..|...
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~---g-~VlliD~D~q~~~~~~~~~ 48 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQ---G-ETLLIDGDPNRSATGWGKR 48 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTT---S-CEEEEEECTTCHHHHHHHH
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhc---C-CEEEEECCCCCCHHHHhcC
Confidence 445667999999999998887632 2 666643 56666777653
No 334
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=30.92 E-value=1.5e+02 Score=27.37 Aligned_cols=58 Identities=7% Similarity=-0.008 Sum_probs=39.8
Q ss_pred CCeEEEEec------cHHHHHHHHHHHHhCCCc---EEEecCCCCHHHHHHHHHHhcCCCCCceEEEEe
Q psy7773 185 KHRVLMFCQ------MTQLMTILEDYFIWRDFS---YLRLDGTTKSEDRGELLRKFNEPESKYFIFLLS 244 (1281)
Q Consensus 185 ~~kvlIFs~------~~~~~~~l~~~l~~~g~~---~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~s 244 (1281)
..+|+||+. +...-.....+|...|++ |..++=....+-+..+...... .. +.++++.
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~-~t-vP~vfI~ 81 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEW-PT-IPQLYVN 81 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTC-CS-SCEEEET
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCC-CC-CCeEEEC
Confidence 468999988 577788888889889998 7777766666666666554432 33 3344444
No 335
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=30.85 E-value=1.3e+02 Score=27.13 Aligned_cols=67 Identities=12% Similarity=0.122 Sum_probs=43.6
Q ss_pred HHHHHhhhCCCeEEEEec------cHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEec
Q psy7773 176 RILPKFKETKHRVLMFCQ------MTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLST 245 (1281)
Q Consensus 176 ~ll~~~~~~~~kvlIFs~------~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st 245 (1281)
..+..+.. ..+|+||+. +...-.....+|...|++|..++=...+..+..+...... . .+.++++..
T Consensus 9 ~~v~~~i~-~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~-~-tvP~ifi~g 81 (109)
T 3ipz_A 9 DTLEKLVN-SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNW-P-TFPQLYIGG 81 (109)
T ss_dssp HHHHHHHT-SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTC-S-SSCEEEETT
T ss_pred HHHHHHHc-cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCC-C-CCCeEEECC
Confidence 33444333 468999997 5788888999999999998887655555556665554432 2 244445543
No 336
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=30.32 E-value=38 Score=43.03 Aligned_cols=23 Identities=26% Similarity=0.182 Sum_probs=17.8
Q ss_pred CCCCeEEecCCCCCHHHHHHHHH
Q psy7773 563 NNLNGILADEMGLGKTVQTIALL 585 (1281)
Q Consensus 563 ~~~~gILademGlGKTi~ai~ll 585 (1281)
.+.+.+|.-+.|+|||..+-++.
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala 259 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVA 259 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHH
Confidence 34457889999999998776654
No 337
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=30.04 E-value=1e+02 Score=28.08 Aligned_cols=76 Identities=17% Similarity=0.072 Sum_probs=44.5
Q ss_pred CcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccc-----cCC-CCCCCCEEEEeCCCCCcchhhHHhHhhhhcC
Q psy7773 210 FSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGG-----LGL-NLQAADTVIIFDSDWNPHQDLQAQDRAHRIG 283 (1281)
Q Consensus 210 ~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~-----~Gl-nL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~G 283 (1281)
+..+.++-.++...-..++..++.......|++++..... ..+ ....+...-++.-|+++....+++.++...+
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 6777777777665566666666544444567777654331 111 1122333345567888888888888887765
Q ss_pred CC
Q psy7773 284 QK 285 (1281)
Q Consensus 284 q~ 285 (1281)
+.
T Consensus 127 ~~ 128 (135)
T 3eqz_A 127 AE 128 (135)
T ss_dssp --
T ss_pred cc
Confidence 53
No 338
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=29.97 E-value=1.4e+02 Score=26.19 Aligned_cols=92 Identities=8% Similarity=-0.028 Sum_probs=46.5
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccCCCCCCCCEEEEe
Q psy7773 184 TKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIF 263 (1281)
Q Consensus 184 ~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~GlnL~~a~~vi~~ 263 (1281)
.|-.+..++.....+..+ ....+..+.++-.++...-..++..++.......|++++...... .....+...-++
T Consensus 24 ~~~~v~~~~~~~~a~~~~----~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~-~~~~~~g~~~~l 98 (116)
T 3a10_A 24 EGYEIDTAENGEEALKKF----FSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYR-SDMSSWAADEYV 98 (116)
T ss_dssp TTCEEEEESSHHHHHHHH----HHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGG-GCGGGGGSSEEE
T ss_pred CCCEEEEeCCHHHHHHHH----hcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchH-HHHHhccccceE
Confidence 455665555444444433 345677777776654333333444443222234566666443222 222211122234
Q ss_pred CCCCCcchhhHHhHhhh
Q psy7773 264 DSDWNPHQDLQAQDRAH 280 (1281)
Q Consensus 264 d~~wnp~~~~Qa~gR~~ 280 (1281)
.-|+++....+++.++.
T Consensus 99 ~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 99 VKSFNFDELKEKVKKLL 115 (116)
T ss_dssp ECCSSTHHHHHHHHHHT
T ss_pred ECCCCHHHHHHHHHHHh
Confidence 56788888888877764
No 339
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=29.96 E-value=1e+02 Score=28.52 Aligned_cols=80 Identities=10% Similarity=0.097 Sum_probs=41.4
Q ss_pred cEEEEeCCHHHHHHHHhhhcc-CCccEEEechHHHhhccccccc-CceeEEEEeCCcccc--ccchHHHHHHHh--hhcc
Q psy7773 622 NVVAYKGSPLARRALQGRMKN-SKFNVLLTTYEFIIKDKSVLSK-IQWKCMIIDEGHRMK--NHHCKLTQTLNT--FYNS 695 (1281)
Q Consensus 622 ~~~~~~g~~~~r~~~~~~~~~-~~~~vvItTye~l~~~~~~l~~-~~w~~vIvDEaHr~k--n~~s~~~~~l~~--~~~~ 695 (1281)
++++.......+..+...... ..+.|+.++ ........+.. ..+++||+|=. +. .....+.+.++. ....
T Consensus 6 ~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~--~~~~a~~~l~~~~~~dlvi~D~~--l~~~~~g~~~~~~l~~~~~~~~ 81 (140)
T 3lua_A 6 TVLLIDYFEYEREKTKIIFDNIGEYDFIEVE--NLKKFYSIFKDLDSITLIIMDIA--FPVEKEGLEVLSAIRNNSRTAN 81 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHCCCEEEEEC--SHHHHHTTTTTCCCCSEEEECSC--SSSHHHHHHHHHHHHHSGGGTT
T ss_pred eEEEEeCCHHHHHHHHHHHHhccCccEEEEC--CHHHHHHHHhcCCCCcEEEEeCC--CCCCCcHHHHHHHHHhCcccCC
Confidence 444455555544444443333 445554332 12222334455 67899999932 22 123344555655 4455
Q ss_pred CcEEEeecCC
Q psy7773 696 SHRVLLTGTP 705 (1281)
Q Consensus 696 ~~rllLTgTP 705 (1281)
...+++|+.+
T Consensus 82 ~~ii~ls~~~ 91 (140)
T 3lua_A 82 TPVIIATKSD 91 (140)
T ss_dssp CCEEEEESCC
T ss_pred CCEEEEeCCC
Confidence 6778888864
No 340
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=29.53 E-value=1.3e+02 Score=27.33 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=39.7
Q ss_pred CCCeEEEEec------cHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEe
Q psy7773 184 TKHRVLMFCQ------MTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLS 244 (1281)
Q Consensus 184 ~~~kvlIFs~------~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~s 244 (1281)
...+|+||+. +...-......|...|++|..++=...+..+..+...... .. +.++++.
T Consensus 14 ~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~-~t-vP~ifi~ 78 (111)
T 3zyw_A 14 HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSW-PT-YPQLYVS 78 (111)
T ss_dssp TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTC-CS-SCEEEET
T ss_pred hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCC-CC-CCEEEEC
Confidence 3468999994 6677788888999999998887655566666665544332 23 4344444
No 341
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=29.45 E-value=1.8e+02 Score=32.17 Aligned_cols=32 Identities=25% Similarity=0.261 Sum_probs=22.3
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEe
Q psy7773 568 ILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIV 602 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~ 602 (1281)
.+.-..|.|||..+..++..+... .+.++++.
T Consensus 109 ~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid 140 (320)
T 1zu4_A 109 MLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAA 140 (320)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEe
Confidence 345569999999988887776532 35666664
No 342
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=29.28 E-value=63 Score=29.20 Aligned_cols=45 Identities=7% Similarity=0.184 Sum_probs=34.9
Q ss_pred HHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCC
Q psy7773 175 DRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTK 220 (1281)
Q Consensus 175 ~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~ 220 (1281)
...+..+ ..+.++||||............|...|+.+..++|++.
T Consensus 46 ~~~~~~l-~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 46 REKWKIL-ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHGGGS-CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHhC-CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 3334333 34578999999877778888899999999899999875
No 343
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=28.94 E-value=65 Score=29.31 Aligned_cols=106 Identities=8% Similarity=-0.064 Sum_probs=55.2
Q ss_pred HHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCC--CCCceEEEEecccccc
Q psy7773 173 LLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEP--ESKYFIFLLSTRAGGL 250 (1281)
Q Consensus 173 ~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~--~~~~~vll~st~~~~~ 250 (1281)
.|..+|.. .|-.|..++.....+..+ ....+..+.++-.++...-..++...+.. ...+.|++++......
T Consensus 18 ~l~~~L~~---~g~~v~~~~~~~~a~~~l----~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~ 90 (127)
T 3i42_A 18 TFKELLEM---LGFQADYVMSGTDALHAM----STRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKND 90 (127)
T ss_dssp HHHHHHHH---TTEEEEEESSHHHHHHHH----HHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTT
T ss_pred HHHHHHHH---cCCCEEEECCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchh
Confidence 34444433 355666666555544444 44567788887666544444555555432 2345676766544332
Q ss_pred CCCCCCCCEEEEeCCCCCcchhhHHhHhhhhcCCC
Q psy7773 251 GLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQK 285 (1281)
Q Consensus 251 GlnL~~a~~vi~~d~~wnp~~~~Qa~gR~~R~Gq~ 285 (1281)
-.....+...-++.-|+++....+++.+.++-++.
T Consensus 91 ~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~~~ 125 (127)
T 3i42_A 91 LGKEACELFDFYLEKPIDIASLEPILQSIEGHHHH 125 (127)
T ss_dssp CCHHHHHHCSEEEESSCCHHHHHHHHHHHC-----
T ss_pred HHHHHHHhhHHheeCCCCHHHHHHHHHHhhccCCC
Confidence 21111111222556788899999999888876543
No 344
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=28.86 E-value=2.1e+02 Score=29.40 Aligned_cols=90 Identities=16% Similarity=0.124 Sum_probs=52.3
Q ss_pred ccCcHHHHH-HHHHHHhh------hCCCeEEEEeccHHHHHHHHHHHHh----CCCcEEEecCCCCHHHHHHHHHHhcCC
Q psy7773 166 RTSGKFELL-DRILPKFK------ETKHRVLMFCQMTQLMTILEDYFIW----RDFSYLRLDGTTKSEDRGELLRKFNEP 234 (1281)
Q Consensus 166 ~~s~K~~~L-~~ll~~~~------~~~~kvlIFs~~~~~~~~l~~~l~~----~g~~~~~~~g~~~~~~R~~~i~~F~~~ 234 (1281)
..+||.... .-++..+. ..+.++||.+.....+..+...+.. .++.+..++|+.+.......+ ..
T Consensus 71 TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~- 146 (236)
T 2pl3_A 71 TGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI---NN- 146 (236)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH---TT-
T ss_pred CCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC---CC-
Confidence 358888753 33333332 3567899999988766655555543 458888999987754433322 22
Q ss_pred CCCceEEEEeccccc------cCCCCCCCCEEEE
Q psy7773 235 ESKYFIFLLSTRAGG------LGLNLQAADTVII 262 (1281)
Q Consensus 235 ~~~~~vll~st~~~~------~GlnL~~a~~vi~ 262 (1281)
+.|+++++.... ..+++...+.||+
T Consensus 147 ---~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 147 ---INILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp ---CSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred ---CCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 347777765442 1355556655554
No 345
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=28.76 E-value=1.8e+02 Score=26.86 Aligned_cols=59 Identities=12% Similarity=0.088 Sum_probs=40.6
Q ss_pred CeEEEEec------cHHHHHHHHHHHHhCCCc-EEEecCCCCHHHHHHHHHHhcCCCCCceEEEEecc
Q psy7773 186 HRVLMFCQ------MTQLMTILEDYFIWRDFS-YLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTR 246 (1281)
Q Consensus 186 ~kvlIFs~------~~~~~~~l~~~l~~~g~~-~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~ 246 (1281)
.+|+||+. +...-.....+|...|++ |..++=...++-+..+...... .. +.++++...
T Consensus 20 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~tg~-~t-vP~vfI~g~ 85 (118)
T 2wem_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNW-PT-IPQVYLNGE 85 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHHTC-CS-SCEEEETTE
T ss_pred CCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHhCC-CC-cCeEEECCE
Confidence 58999998 577888889999999995 8877766666666665554432 23 444555433
No 346
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=28.55 E-value=3e+02 Score=25.03 Aligned_cols=93 Identities=13% Similarity=0.061 Sum_probs=48.5
Q ss_pred CeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCC--CCceEEEEeccccccC-CCCCCCCEEEE
Q psy7773 186 HRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPE--SKYFIFLLSTRAGGLG-LNLQAADTVII 262 (1281)
Q Consensus 186 ~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~--~~~~vll~st~~~~~G-lnL~~a~~vi~ 262 (1281)
..+..+......+..+. ...+..+.++-.++...-..++...+... ..+.|++++......- .....+...-+
T Consensus 27 ~~v~~~~~~~~a~~~~~----~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~ 102 (140)
T 3n53_A 27 YLVIESKNEKEALEQID----HHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVNGLHSGADDY 102 (140)
T ss_dssp SEEEEESSHHHHHHHHH----HHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC----CTTTTTTCCCSEE
T ss_pred ceEEEeCCHHHHHHHHh----cCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecCCCHHHHHHHHhcCCCee
Confidence 45555555555555443 34677888887776655556666665432 3456777765432221 22222222233
Q ss_pred eCCCCCcchhhHHhHhhhhc
Q psy7773 263 FDSDWNPHQDLQAQDRAHRI 282 (1281)
Q Consensus 263 ~d~~wnp~~~~Qa~gR~~R~ 282 (1281)
+--|+++....+++.++.+-
T Consensus 103 l~KP~~~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 103 LTKPFNRNDLLSRIEIHLRT 122 (140)
T ss_dssp EESSCCHHHHHHHHHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHhh
Confidence 44578888888888887653
No 347
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=28.49 E-value=1.7e+02 Score=25.70 Aligned_cols=90 Identities=11% Similarity=0.033 Sum_probs=46.8
Q ss_pred cCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccccCc--ccCCEEE
Q psy7773 887 TKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNL--QAADTVI 964 (1281)
Q Consensus 887 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~GlNL--~~ad~VI 964 (1281)
.|..|..++.....+..+ ....+..+.+|-.++...-..++..++.......++++|...... ... .+|+..+
T Consensus 24 ~~~~v~~~~~~~~a~~~~----~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~-~~~~~~g~~~~l 98 (116)
T 3a10_A 24 EGYEIDTAENGEEALKKF----FSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYR-SDMSSWAADEYV 98 (116)
T ss_dssp TTCEEEEESSHHHHHHHH----HHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGG-GCGGGGGSSEEE
T ss_pred CCCEEEEeCCHHHHHHHH----hcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchH-HHHHhccccceE
Confidence 366666666555555443 345677787776655433334444443211233455555433221 221 1244433
Q ss_pred EeCCCCChhhhhhHhHhHH
Q psy7773 965 IFDSDWNPHQDLQAQDRAH 983 (1281)
Q Consensus 965 ~~D~~wnp~~~~Qa~gR~~ 983 (1281)
--|+++....+++.++.
T Consensus 99 --~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 99 --VKSFNFDELKEKVKKLL 115 (116)
T ss_dssp --ECCSSTHHHHHHHHHHT
T ss_pred --ECCCCHHHHHHHHHHHh
Confidence 35788888888777654
No 348
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=28.39 E-value=56 Score=30.48 Aligned_cols=52 Identities=10% Similarity=0.144 Sum_probs=35.4
Q ss_pred hHHHHHHHhhhhhhcCCeEEEEec-hHHHHHHHHHHHHHCCCcEEEEeCCCCh
Q psy7773 873 KFELLDRILPKFKETKHRVLMFCQ-MTQLMTILEDYFIWRDFSYLRLDGTTKS 924 (1281)
Q Consensus 873 K~~~L~~lL~~~~~~~~kvLIFsq-~~~~ld~L~~~L~~~g~~~~~l~G~~~~ 924 (1281)
++..+...+..+...+..|||||. .-.........|...|+++..|+|++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 74 KLKDIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp GHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred cHHHHHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 334444444444332278999994 5555667778889999988899998764
No 349
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=27.95 E-value=1.2e+02 Score=28.63 Aligned_cols=43 Identities=26% Similarity=0.327 Sum_probs=25.4
Q ss_pred cccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEEeecCC
Q psy7773 662 LSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLTGTP 705 (1281)
Q Consensus 662 l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllLTgTP 705 (1281)
+....+++||+|=.-- ......+.+.++..+.....+++|+.+
T Consensus 54 l~~~~~dlvi~D~~l~-~~~g~~~~~~l~~~~~~~~ii~~s~~~ 96 (153)
T 3hv2_A 54 LASREVDLVISAAHLP-QMDGPTLLARIHQQYPSTTRILLTGDP 96 (153)
T ss_dssp HHHSCCSEEEEESCCS-SSCHHHHHHHHHHHCTTSEEEEECCCC
T ss_pred HHcCCCCEEEEeCCCC-cCcHHHHHHHHHhHCCCCeEEEEECCC
Confidence 3445688999984322 222334555565554556678888864
No 350
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=27.64 E-value=58 Score=29.42 Aligned_cols=45 Identities=7% Similarity=0.184 Sum_probs=35.0
Q ss_pred HHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCC
Q psy7773 878 DRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTK 923 (1281)
Q Consensus 878 ~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~ 923 (1281)
...+..+ ..+..|+|||..-.........|...|+++..|+|++.
T Consensus 46 ~~~~~~l-~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 46 REKWKIL-ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHGGGS-CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHhC-CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 3344444 34668999999877778888899999999899999865
No 351
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=27.58 E-value=1.9e+02 Score=26.11 Aligned_cols=96 Identities=15% Similarity=0.038 Sum_probs=47.5
Q ss_pred cCCeEEEEechHHHHHHHHHHHHHC-CCcEEEEeCCCCh-HHHHHHHHhhcCCCCCeEEEEEecccccccc-CcccCCEE
Q psy7773 887 TKHRVLMFCQMTQLMTILEDYFIWR-DFSYLRLDGTTKS-EDRGELLRKFNEPESKYFIFLLSTRAGGLGL-NLQAADTV 963 (1281)
Q Consensus 887 ~~~kvLIFsq~~~~ld~L~~~L~~~-g~~~~~l~G~~~~-~~R~~~i~~Fn~~~~~~~v~LlsT~agg~Gl-NL~~ad~V 963 (1281)
.|..|..++.....+..+. .. .+..+.++-.++. ..-..++...+.....+.|+++|.......+ ....+.
T Consensus 28 ~g~~v~~~~~~~~a~~~l~----~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~-- 101 (132)
T 2rdm_A 28 AGFLVTAVSSGAKAIEMLK----SGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGHAALEWASNGVPDS-- 101 (132)
T ss_dssp TTCEEEEESSHHHHHHHHH----TTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESSCCTTHHHHSCTTC--
T ss_pred cCCEEEEECCHHHHHHHHH----cCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCCccHHHHHhhcCCc--
Confidence 4566666665555554433 33 5677777755543 2223333333221123445555543322111 111122
Q ss_pred EEeCCCCChhhhhhHhHhHHhhCCC
Q psy7773 964 IIFDSDWNPHQDLQAQDRAHRIGQK 988 (1281)
Q Consensus 964 I~~D~~wnp~~~~Qa~gR~~RiGQ~ 988 (1281)
-++--|.++....+++.++.+.+..
T Consensus 102 ~~l~kP~~~~~l~~~i~~~~~~~~~ 126 (132)
T 2rdm_A 102 IILEKPFTSAQLITAVSQLLNAREG 126 (132)
T ss_dssp EEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred ceEeCCCCHHHHHHHHHHHHhcCCC
Confidence 1344578888888888888776554
No 352
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=27.54 E-value=1.2e+02 Score=28.50 Aligned_cols=82 Identities=15% Similarity=0.115 Sum_probs=40.2
Q ss_pred CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEE
Q psy7773 621 ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVL 700 (1281)
Q Consensus 621 ~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rll 700 (1281)
.+++++......+..+........+.|+.++ ........+....+++||+|-.-- ......+.+.+.........++
T Consensus 8 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~--~~~~a~~~l~~~~~dlvi~d~~l~-~~~g~~~~~~l~~~~~~~~ii~ 84 (154)
T 2rjn_A 8 YTVMLVDDEQPILNSLKRLIKRLGCNIITFT--SPLDALEALKGTSVQLVISDMRMP-EMGGEVFLEQVAKSYPDIERVV 84 (154)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEES--CHHHHHHHHTTSCCSEEEEESSCS-SSCHHHHHHHHHHHCTTSEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHcCCeEEEeC--CHHHHHHHHhcCCCCEEEEecCCC-CCCHHHHHHHHHHhCCCCcEEE
Confidence 3444444554444444433333344444322 111222334445689999995321 1123344555655444556778
Q ss_pred eecCC
Q psy7773 701 LTGTP 705 (1281)
Q Consensus 701 LTgTP 705 (1281)
+|+.+
T Consensus 85 ls~~~ 89 (154)
T 2rjn_A 85 ISGYA 89 (154)
T ss_dssp EECGG
T ss_pred EecCC
Confidence 88764
No 353
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=27.24 E-value=1.1e+02 Score=28.20 Aligned_cols=81 Identities=12% Similarity=0.081 Sum_probs=40.6
Q ss_pred cEEEEeCCHHHHHHHHhhhccCC-ccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEE
Q psy7773 622 NVVAYKGSPLARRALQGRMKNSK-FNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVL 700 (1281)
Q Consensus 622 ~~~~~~g~~~~r~~~~~~~~~~~-~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rll 700 (1281)
++++.......+..+........ +.|..+ .........+....+++||+|=.- -......+.+.++........++
T Consensus 16 ~ilivdd~~~~~~~l~~~L~~~g~~~v~~~--~~~~~a~~~l~~~~~dlvi~D~~l-~~~~g~~~~~~l~~~~~~~~ii~ 92 (135)
T 3snk_A 16 QVALFSSDPNFKRDVATRLDALAIYDVRVS--ETDDFLKGPPADTRPGIVILDLGG-GDLLGKPGIVEARALWATVPLIA 92 (135)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTSSEEEEEE--CGGGGGGCCCTTCCCSEEEEEEET-TGGGGSTTHHHHHGGGTTCCEEE
T ss_pred EEEEEcCCHHHHHHHHHHHhhcCCeEEEEe--ccHHHHHHHHhccCCCEEEEeCCC-CCchHHHHHHHHHhhCCCCcEEE
Confidence 34444444444444333333333 444422 222233344556678999998321 11223344555665544566788
Q ss_pred eecCC
Q psy7773 701 LTGTP 705 (1281)
Q Consensus 701 LTgTP 705 (1281)
+|+.+
T Consensus 93 ~s~~~ 97 (135)
T 3snk_A 93 VSDEL 97 (135)
T ss_dssp EESCC
T ss_pred EeCCC
Confidence 88864
No 354
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=27.10 E-value=1.7e+02 Score=30.04 Aligned_cols=91 Identities=13% Similarity=0.096 Sum_probs=52.5
Q ss_pred ccCcHHHH-HHHHHHHhh--------hCCCeEEEEeccHHHHHHHHHHHHh---CCCcEEEecCCCCHHHHHHHHHHhcC
Q psy7773 166 RTSGKFEL-LDRILPKFK--------ETKHRVLMFCQMTQLMTILEDYFIW---RDFSYLRLDGTTKSEDRGELLRKFNE 233 (1281)
Q Consensus 166 ~~s~K~~~-L~~ll~~~~--------~~~~kvlIFs~~~~~~~~l~~~l~~---~g~~~~~~~g~~~~~~R~~~i~~F~~ 233 (1281)
..|||..+ +.-++..+. ..+.++||.+.....+..+...+.. .++.+..+.|+.+...+... +..
T Consensus 66 TGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 142 (228)
T 3iuy_A 66 TGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---ISK 142 (228)
T ss_dssp TTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HHS
T ss_pred CCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hcC
Confidence 35889754 344444332 2567899999998887777777665 47888888888775443322 222
Q ss_pred CCCCceEEEEeccccc-----cCCCCCCCCEEEE
Q psy7773 234 PESKYFIFLLSTRAGG-----LGLNLQAADTVII 262 (1281)
Q Consensus 234 ~~~~~~vll~st~~~~-----~GlnL~~a~~vi~ 262 (1281)
+ +.|+++++.... ..+++...+.||+
T Consensus 143 ~---~~iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 143 G---VDIIIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp C---CSEEEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred C---CCEEEECHHHHHHHHHcCCcCcccceEEEE
Confidence 1 347777654432 2455666666655
No 355
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=27.03 E-value=1.1e+02 Score=27.30 Aligned_cols=41 Identities=2% Similarity=0.013 Sum_probs=23.7
Q ss_pred cCceeEEEEeCCccccccchHHHHHHHhhhccCcEEEeecCC
Q psy7773 664 KIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLTGTP 705 (1281)
Q Consensus 664 ~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllLTgTP 705 (1281)
...++++|+|-.-- ......+.+.+....+....+++|+.+
T Consensus 45 ~~~~dlil~D~~l~-~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (120)
T 1tmy_A 45 ELKPDIVTMDITMP-EMNGIDAIKEIMKIDPNAKIIVCSAMG 85 (120)
T ss_dssp HHCCSEEEEECSCG-GGCHHHHHHHHHHHCTTCCEEEEECTT
T ss_pred hcCCCEEEEeCCCC-CCcHHHHHHHHHhhCCCCeEEEEeCCC
Confidence 34689999995321 112234455555543455678888864
No 356
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=26.85 E-value=97 Score=29.55 Aligned_cols=39 Identities=5% Similarity=0.053 Sum_probs=23.6
Q ss_pred ceeEEEEeCCccccccchHHHHHHHhhhccCcEEEeecCC
Q psy7773 666 QWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLTGTP 705 (1281)
Q Consensus 666 ~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllLTgTP 705 (1281)
.+++||+|=.- -......+.+.++........+++|+..
T Consensus 83 ~~dliilD~~l-~~~~g~~~~~~lr~~~~~~~ii~ls~~~ 121 (157)
T 3hzh_A 83 NIDIVTLXITM-PKMDGITCLSNIMEFDKNARVIMISALG 121 (157)
T ss_dssp GCCEEEECSSC-SSSCHHHHHHHHHHHCTTCCEEEEESCC
T ss_pred CCCEEEEeccC-CCccHHHHHHHHHhhCCCCcEEEEeccC
Confidence 57899998432 1222334556666554556678888864
No 357
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=26.59 E-value=2.5e+02 Score=27.97 Aligned_cols=90 Identities=16% Similarity=0.166 Sum_probs=56.9
Q ss_pred cccchHHH-HHHHhhhhh-----hcCCeEEEEechHHHHHHHHHHHHHC--CCcEEEEeCCCChHHHHHHHHhhcCCCCC
Q psy7773 869 RTSGKFEL-LDRILPKFK-----ETKHRVLMFCQMTQLMTILEDYFIWR--DFSYLRLDGTTKSEDRGELLRKFNEPESK 940 (1281)
Q Consensus 869 ~~s~K~~~-L~~lL~~~~-----~~~~kvLIFsq~~~~ld~L~~~L~~~--g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~ 940 (1281)
..+||-.. +.-++..+. ..+.++||.+.....+..+...+... ++++..+.|+.+.......+.. ...
T Consensus 47 TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 122 (207)
T 2gxq_A 47 TGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLR----GAD 122 (207)
T ss_dssp TTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHH----CCS
T ss_pred CCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhC----CCC
Confidence 46888865 444444443 35678999999988888777777654 4788889998876555444432 123
Q ss_pred eEEEEEeccc-c-----ccccCcccCCEEEE
Q psy7773 941 YFIFLLSTRA-G-----GLGLNLQAADTVII 965 (1281)
Q Consensus 941 ~~v~LlsT~a-g-----g~GlNL~~ad~VI~ 965 (1281)
| +++|.. . ...+++...+.||+
T Consensus 123 --i-~v~T~~~l~~~~~~~~~~~~~~~~iVi 150 (207)
T 2gxq_A 123 --A-VVATPGRALDYLRQGVLDLSRVEVAVL 150 (207)
T ss_dssp --E-EEECHHHHHHHHHHTSSCCTTCSEEEE
T ss_pred --E-EEECHHHHHHHHHcCCcchhhceEEEE
Confidence 3 556531 1 12355667777776
No 358
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=26.40 E-value=69 Score=29.31 Aligned_cols=26 Identities=12% Similarity=0.229 Sum_probs=12.7
Q ss_pred CeEEEEeccHHHHHHHHHHHHhCCCc
Q psy7773 186 HRVLMFCQMTQLMTILEDYFIWRDFS 211 (1281)
Q Consensus 186 ~kvlIFs~~~~~~~~l~~~l~~~g~~ 211 (1281)
.+|+|..........|...|...|+.
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~ 32 (132)
T 3lte_A 7 KRILVVDDDQAMAAAIERVLKRDHWQ 32 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCE
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCcE
Confidence 34455554444455555555444443
No 359
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=26.37 E-value=2e+02 Score=26.97 Aligned_cols=29 Identities=7% Similarity=0.112 Sum_probs=19.1
Q ss_pred CCeEEEEechHHHHHHHHHHHHHCCCcEE
Q psy7773 888 KHRVLMFCQMTQLMTILEDYFIWRDFSYL 916 (1281)
Q Consensus 888 ~~kvLIFsq~~~~ld~L~~~L~~~g~~~~ 916 (1281)
+.+|||..........|...|...|+.+.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~ 35 (154)
T 2rjn_A 7 NYTVMLVDDEQPILNSLKRLIKRLGCNII 35 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHcCCeEE
Confidence 34577777777777777777766666544
No 360
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=25.36 E-value=38 Score=36.49 Aligned_cols=22 Identities=23% Similarity=0.007 Sum_probs=18.5
Q ss_pred CeEEecCCCCCHHHHHHHHHHH
Q psy7773 566 NGILADEMGLGKTVQTIALLTY 587 (1281)
Q Consensus 566 ~gILademGlGKTi~ai~ll~~ 587 (1281)
+.+|..++|+|||..+.+++..
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 3568999999999999888765
No 361
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=25.33 E-value=42 Score=35.87 Aligned_cols=25 Identities=24% Similarity=0.169 Sum_probs=20.0
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHH
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYL 588 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l 588 (1281)
..+.+|..++|+|||..+-++...+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 4456889999999999988776654
No 362
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=25.25 E-value=1.3e+02 Score=27.50 Aligned_cols=83 Identities=16% Similarity=0.110 Sum_probs=41.6
Q ss_pred CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCcc----ccccchHHHHHHHhhhccC
Q psy7773 621 ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHR----MKNHHCKLTQTLNTFYNSS 696 (1281)
Q Consensus 621 ~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr----~kn~~s~~~~~l~~~~~~~ 696 (1281)
.+++++......+..+........+.|..++- .......+....+++||+|-.-- .......+.+.+...+...
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~--~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~ 81 (140)
T 2qr3_A 4 GTIIIVDDNKGVLTAVQLLLKNHFSKVITLSS--PVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDL 81 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTSSEEEEECC--HHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTC
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCC--HHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCC
Confidence 34555555555555444444334455543321 11122334445689999995421 0122334455555544556
Q ss_pred cEEEeecCC
Q psy7773 697 HRVLLTGTP 705 (1281)
Q Consensus 697 ~rllLTgTP 705 (1281)
..+++|+.+
T Consensus 82 ~ii~ls~~~ 90 (140)
T 2qr3_A 82 PVVLFTAYA 90 (140)
T ss_dssp CEEEEEEGG
T ss_pred CEEEEECCC
Confidence 678888764
No 363
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=25.09 E-value=68 Score=33.01 Aligned_cols=33 Identities=24% Similarity=0.197 Sum_probs=25.0
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q psy7773 568 ILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVP 603 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P 603 (1281)
|..-..|.|||.+++.++..+...+ .++|++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G---~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAG---YRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTT---CCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC---CCEEEEcc
Confidence 5566789999999999998886432 37777655
No 364
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=24.94 E-value=2.2e+02 Score=27.99 Aligned_cols=77 Identities=10% Similarity=0.100 Sum_probs=53.2
Q ss_pred HHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEecccccccc
Q psy7773 876 LLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGL 955 (1281)
Q Consensus 876 ~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~Gl 955 (1281)
.+...+.........+.|.+........|...|...|+++..+++... .|. .. +.++|--.+-|+
T Consensus 49 ~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~~---~~---v~v~t~~~~KGl 113 (174)
T 3dmn_A 49 QVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RLA---PG---VIVVPSFLAKGL 113 (174)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CCC---SS---EEEEEGGGCTTC
T ss_pred HHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------ccC---CC---eEEEEccccCCc
Confidence 344444432233456888899999999999999999999887776543 122 23 456666677786
Q ss_pred CcccCCEEEEeCCCC
Q psy7773 956 NLQAADTVIIFDSDW 970 (1281)
Q Consensus 956 NL~~ad~VI~~D~~w 970 (1281)
- .|+||++++..
T Consensus 114 E---f~~V~~~~~~~ 125 (174)
T 3dmn_A 114 E---FDAVIVWNANQ 125 (174)
T ss_dssp C---EEEEEEETCBT
T ss_pred C---CCEEEEecCCc
Confidence 5 78999998764
No 365
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=24.44 E-value=35 Score=40.58 Aligned_cols=26 Identities=15% Similarity=0.050 Sum_probs=20.5
Q ss_pred cCCCCeEEecCCCCCHHHHHHHHHHH
Q psy7773 562 NNNLNGILADEMGLGKTVQTIALLTY 587 (1281)
Q Consensus 562 ~~~~~gILademGlGKTi~ai~ll~~ 587 (1281)
..+.+.+|..++|+|||..|-++...
T Consensus 39 ~~~~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 39 LSGESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp HHTCEEEEECCSSSSHHHHHHHGGGG
T ss_pred hcCCeeEeecCchHHHHHHHHHHHHH
Confidence 34668899999999999887766543
No 366
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=24.33 E-value=64 Score=38.43 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=26.8
Q ss_pred CcccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHH
Q psy7773 544 GKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALL 585 (1281)
Q Consensus 544 ~~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll 585 (1281)
|.+.+.+...+.+.+ ..+.+.+++-++|+|||...-+++
T Consensus 243 G~~~~~~l~~l~~~v---~~g~~i~I~GptGSGKTTlL~aL~ 281 (511)
T 2oap_1 243 GTVPSGVLAYLWLAI---EHKFSAIVVGETASGKTTTLNAIM 281 (511)
T ss_dssp TSSCHHHHHHHHHHH---HTTCCEEEEESTTSSHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHH---hCCCEEEEECCCCCCHHHHHHHHH
Confidence 445566666665544 356677889999999997665544
No 367
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=24.11 E-value=2.4e+02 Score=25.89 Aligned_cols=84 Identities=11% Similarity=0.004 Sum_probs=0.0
Q ss_pred CcEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEE
Q psy7773 621 ANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVL 700 (1281)
Q Consensus 621 ~~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rll 700 (1281)
.++++....+..+..+........+.|+.++-..-.-..-.-....+++||+| .+--......+.+.++........++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d-~~l~~~~g~~~~~~l~~~~~~~~ii~ 82 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITD-MKMPKLSGMDILREIKKITPHMAVII 82 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEE-SCCSSSCHHHHHHHHHHHCTTCEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEe-CCCCCCcHHHHHHHHHHhCCCCeEEE
Q ss_pred eecCC
Q psy7773 701 LTGTP 705 (1281)
Q Consensus 701 LTgTP 705 (1281)
+|+.+
T Consensus 83 ls~~~ 87 (143)
T 3jte_A 83 LTGHG 87 (143)
T ss_dssp EECTT
T ss_pred EECCC
No 368
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=24.01 E-value=1e+02 Score=28.49 Aligned_cols=26 Identities=8% Similarity=0.025 Sum_probs=14.3
Q ss_pred eEEEEechHHHHHHHHHHHHHCCCcE
Q psy7773 890 RVLMFCQMTQLMTILEDYFIWRDFSY 915 (1281)
Q Consensus 890 kvLIFsq~~~~ld~L~~~L~~~g~~~ 915 (1281)
+|||..........|...|...|+.+
T Consensus 8 ~ilivdd~~~~~~~l~~~L~~~g~~v 33 (136)
T 3kto_A 8 IIYLVDHQKDARAALSKLLSPLDVTI 33 (136)
T ss_dssp EEEEECSCHHHHHHHHHHHTTSSSEE
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCcEE
Confidence 45555555555555555555555543
No 369
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=23.88 E-value=1.3e+02 Score=26.33 Aligned_cols=57 Identities=5% Similarity=-0.060 Sum_probs=39.2
Q ss_pred CeEEEEec-cHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEE
Q psy7773 186 HRVLMFCQ-MTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLL 243 (1281)
Q Consensus 186 ~kvlIFs~-~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~ 243 (1281)
.+|+||+. +...-.....+|...|++|..++=...++.++.+.+.-+ +...+.++++
T Consensus 4 a~I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~~-G~~tVP~I~i 61 (92)
T 2lqo_A 4 AALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVNG-GNRTVPTVKF 61 (92)
T ss_dssp SCEEEEECTTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHSS-SSSCSCEEEE
T ss_pred CcEEEEcCCCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHcC-CCCEeCEEEE
Confidence 46888874 334556677888999999999998888887777666543 3333445444
No 370
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=23.82 E-value=1.4e+02 Score=27.23 Aligned_cols=85 Identities=15% Similarity=0.097 Sum_probs=40.5
Q ss_pred cEEEEeCCHHHHHHHHhhhccCCccEE-E-echHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEE
Q psy7773 622 NVVAYKGSPLARRALQGRMKNSKFNVL-L-TTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRV 699 (1281)
Q Consensus 622 ~~~~~~g~~~~r~~~~~~~~~~~~~vv-I-tTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rl 699 (1281)
++++.......+..+........+.++ . .+.+.. ...+....+++||+|=.- -......+.+.++........+
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a---~~~~~~~~~dlii~d~~l-~~~~g~~~~~~l~~~~~~~~ii 78 (134)
T 3f6c_A 3 NAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSA---VQRVETLKPDIVIIDVDI-PGVNGIQVLETLRKRQYSGIII 78 (134)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTH---HHHHHHHCCSEEEEETTC-SSSCHHHHHHHHHHTTCCSEEE
T ss_pred EEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHH---HHHHHhcCCCEEEEecCC-CCCChHHHHHHHHhcCCCCeEE
Confidence 344455555544444443333334443 1 122211 122334468999999432 1223334556666554555678
Q ss_pred EeecCCCCCCh
Q psy7773 700 LLTGTPLQNKL 710 (1281)
Q Consensus 700 lLTgTPl~n~~ 710 (1281)
++|+.+-....
T Consensus 79 ~~s~~~~~~~~ 89 (134)
T 3f6c_A 79 IVSAKNDHFYG 89 (134)
T ss_dssp EEECC---CTH
T ss_pred EEeCCCChHHH
Confidence 88887654443
No 371
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=23.79 E-value=4.5e+02 Score=27.57 Aligned_cols=91 Identities=14% Similarity=0.108 Sum_probs=55.1
Q ss_pred ccCcHHHH-HHHHHHHhhh------CCCeEEEEeccHHHHHHHHHHH----HhCCCcEEEecCCCCHHHHHHHHHHhcCC
Q psy7773 166 RTSGKFEL-LDRILPKFKE------TKHRVLMFCQMTQLMTILEDYF----IWRDFSYLRLDGTTKSEDRGELLRKFNEP 234 (1281)
Q Consensus 166 ~~s~K~~~-L~~ll~~~~~------~~~kvlIFs~~~~~~~~l~~~l----~~~g~~~~~~~g~~~~~~R~~~i~~F~~~ 234 (1281)
..|||..+ +.-++..+.. .+.++||.+.....+..+...| ...++.+..+.|+.+.......+. .+
T Consensus 100 TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~ 176 (262)
T 3ly5_A 100 TGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLG---NG 176 (262)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHH---HC
T ss_pred CCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhc---CC
Confidence 35888865 4444444432 5778999999887655554444 445788889999888654443332 21
Q ss_pred CCCceEEEEecccc------ccCCCCCCCCEEEE
Q psy7773 235 ESKYFIFLLSTRAG------GLGLNLQAADTVII 262 (1281)
Q Consensus 235 ~~~~~vll~st~~~------~~GlnL~~a~~vi~ 262 (1281)
+.|+++++... +.++++.....||+
T Consensus 177 ---~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 177 ---INIIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp ---CSEEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred ---CCEEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 34666664322 23466676766655
No 372
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=23.78 E-value=95 Score=42.45 Aligned_cols=54 Identities=13% Similarity=-0.005 Sum_probs=37.2
Q ss_pred HHHHHHH--hhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHH
Q psy7773 553 GLEWMVS--LYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSN 609 (1281)
Q Consensus 553 gv~~l~~--~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~ 609 (1281)
.+.+++. -+..+...+|+.++|+|||..++.++..+.. ..++++++.-.....+
T Consensus 719 eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~---~g~~VlyiS~Ees~~q 774 (1706)
T 3cmw_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDP 774 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCH
T ss_pred HHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHH---cCCCeEEEeccchHHH
Confidence 4555553 3445556689999999999999998887753 2357888776554444
No 373
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=23.40 E-value=99 Score=33.82 Aligned_cols=25 Identities=28% Similarity=0.203 Sum_probs=20.1
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHH
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYL 588 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l 588 (1281)
..+.+|.-++|+|||..+-++...+
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh
Confidence 3567999999999999887776544
No 374
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=23.38 E-value=2e+02 Score=25.82 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=9.1
Q ss_pred CCCChhhhhhHhHhHHh
Q psy7773 968 SDWNPHQDLQAQDRAHR 984 (1281)
Q Consensus 968 ~~wnp~~~~Qa~gR~~R 984 (1281)
-|+++....+++.++.+
T Consensus 104 Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 104 KPFEDTVIIEAIERASE 120 (126)
T ss_dssp SSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 35555555555555543
No 375
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=23.25 E-value=1.3e+02 Score=29.69 Aligned_cols=43 Identities=14% Similarity=0.191 Sum_probs=26.2
Q ss_pred cccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEEeecCC
Q psy7773 662 LSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLTGTP 705 (1281)
Q Consensus 662 l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllLTgTP 705 (1281)
+....+++||+|= +--......+.+.++........+++||.+
T Consensus 47 ~~~~~~dlvl~D~-~lp~~~g~~~~~~l~~~~~~~~ii~lt~~~ 89 (184)
T 3rqi_A 47 AGAEKFEFITVXL-HLGNDSGLSLIAPLCDLQPDARILVLTGYA 89 (184)
T ss_dssp HTTSCCSEEEECS-EETTEESHHHHHHHHHHCTTCEEEEEESSC
T ss_pred HhhCCCCEEEEec-cCCCccHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 4445688899882 221223345566666554556778999875
No 376
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=22.96 E-value=1.1e+02 Score=26.56 Aligned_cols=58 Identities=10% Similarity=0.065 Sum_probs=38.6
Q ss_pred eEEEEecc-HHHH------HHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEe
Q psy7773 187 RVLMFCQM-TQLM------TILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLS 244 (1281)
Q Consensus 187 kvlIFs~~-~~~~------~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~s 244 (1281)
+|+||+.. ...- ......|...|++|..++=...+..+..+......+...+.++++.
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi~ 67 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNG 67 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEET
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEEC
Confidence 67888643 2223 5677788899999999888877788888877765311234444444
No 377
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=22.95 E-value=1.2e+02 Score=34.59 Aligned_cols=47 Identities=19% Similarity=0.148 Sum_probs=32.4
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHH
Q psy7773 563 NNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVL 612 (1281)
Q Consensus 563 ~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~ 612 (1281)
.+.++++.-.+|+|||..+-.++..+. . ..++++|+=|..-...+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-~--~~~~~~~~D~~~~~~~~~~ 80 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-M--QGSRVIIIDPEREYKEMCR 80 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-T--TTCCEEEEESSCCSHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-H--CCCEEEEEeCCcCHHHHHH
Confidence 456788899999999988777666654 2 2356777777665444433
No 378
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=22.89 E-value=3e+02 Score=25.02 Aligned_cols=98 Identities=12% Similarity=0.011 Sum_probs=56.7
Q ss_pred HHHHHhhhhhhcCCeEEEEechHHHHHHHHHHHHH-CCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEe-cccccc
Q psy7773 876 LLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIW-RDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLS-TRAGGL 953 (1281)
Q Consensus 876 ~L~~lL~~~~~~~~kvLIFsq~~~~ld~L~~~L~~-~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~Lls-T~agg~ 953 (1281)
.|..+|.. .|..|..+......+..+ .. ..+..+.++-.++...-..++.........+.|+++| ... ..
T Consensus 30 ~l~~~L~~---~g~~v~~~~~~~~al~~l----~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~-~~ 101 (138)
T 2b4a_A 30 LIQYHLNQ---LGAEVTVHPSGSAFFQHR----SQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILTTGRH-EL 101 (138)
T ss_dssp HHHHHHHH---TTCEEEEESSHHHHHHTG----GGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEESCC---C
T ss_pred HHHHHHHH---cCCEEEEeCCHHHHHHHH----HhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCC-CH
Confidence 34444443 356676666655555443 34 5678888887776555556677766544456666676 332 22
Q ss_pred ccCccc-CCEEEEeCCCCChhhhhhHhHhHHh
Q psy7773 954 GLNLQA-ADTVIIFDSDWNPHQDLQAQDRAHR 984 (1281)
Q Consensus 954 GlNL~~-ad~VI~~D~~wnp~~~~Qa~gR~~R 984 (1281)
.. ... |+. ++--|.++....+++.++.+
T Consensus 102 ~~-~~~~~~~--~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 102 IE-SSEHNLS--YLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp CC-CSSSCEE--EEESSCCHHHHHHHHHHTCC
T ss_pred HH-HHHHHHh--eeeCCCCHHHHHHHHHHHHH
Confidence 22 222 333 33458889988888877754
No 379
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=22.89 E-value=1.8e+02 Score=26.73 Aligned_cols=40 Identities=18% Similarity=0.060 Sum_probs=22.3
Q ss_pred CceeEEEEeCCccccccchHHHHHHHh----hhccCcEEEeecCC
Q psy7773 665 IQWKCMIIDEGHRMKNHHCKLTQTLNT----FYNSSHRVLLTGTP 705 (1281)
Q Consensus 665 ~~w~~vIvDEaHr~kn~~s~~~~~l~~----~~~~~~rllLTgTP 705 (1281)
..+++||+|=.-- ......+.+.++. .......+++|+.+
T Consensus 59 ~~~dlvi~D~~l~-~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~ 102 (146)
T 3ilh_A 59 RWPSIICIDINMP-GINGWELIDLFKQHFQPMKNKSIVCLLSSSL 102 (146)
T ss_dssp CCCSEEEEESSCS-SSCHHHHHHHHHHHCGGGTTTCEEEEECSSC
T ss_pred CCCCEEEEcCCCC-CCCHHHHHHHHHHhhhhccCCCeEEEEeCCC
Confidence 5688999984321 2223345555655 22344567787764
No 380
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=22.78 E-value=1.5e+02 Score=27.83 Aligned_cols=81 Identities=17% Similarity=0.053 Sum_probs=39.7
Q ss_pred cEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEEe
Q psy7773 622 NVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLL 701 (1281)
Q Consensus 622 ~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllL 701 (1281)
+++++......+..+.......++.|..++- .......+....+++||+|-.--- .....+.+.+.........+++
T Consensus 5 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~--~~~a~~~l~~~~~dliild~~l~~-~~g~~~~~~l~~~~~~~pii~l 81 (155)
T 1qkk_A 5 SVFLIDDDRDLRKAMQQTLELAGFTVSSFAS--ATEALAGLSADFAGIVISDIRMPG-MDGLALFRKILALDPDLPMILV 81 (155)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESC--HHHHHHTCCTTCCSEEEEESCCSS-SCHHHHHHHHHHHCTTSCEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCcEEEEECC--HHHHHHHHHhCCCCEEEEeCCCCC-CCHHHHHHHHHhhCCCCCEEEE
Confidence 3444444444444443333333454443321 111223344456899999954221 1233445555554455667888
Q ss_pred ecCC
Q psy7773 702 TGTP 705 (1281)
Q Consensus 702 TgTP 705 (1281)
|+.+
T Consensus 82 s~~~ 85 (155)
T 1qkk_A 82 TGHG 85 (155)
T ss_dssp ECGG
T ss_pred ECCC
Confidence 8764
No 381
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=22.59 E-value=1.8e+02 Score=25.73 Aligned_cols=65 Identities=17% Similarity=0.138 Sum_probs=42.2
Q ss_pred HHHHhhhCCCeEEEEec------cHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEe
Q psy7773 177 ILPKFKETKHRVLMFCQ------MTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLS 244 (1281)
Q Consensus 177 ll~~~~~~~~kvlIFs~------~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~s 244 (1281)
.+..+.. ..+|+||+. +...-..+..+|...|+.|..++=...+..+..+...+.. . .+.++++.
T Consensus 9 ~~~~~i~-~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~-~-~vP~v~i~ 79 (105)
T 2yan_A 9 RLKVLTN-KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNW-P-TYPQLYVK 79 (105)
T ss_dssp HHHHHHT-SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTC-C-SSCEEEET
T ss_pred HHHHHhc-cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCC-C-CCCeEEEC
Confidence 3344333 347999984 5667777888888889998888776666667766666643 2 24344443
No 382
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=22.46 E-value=1.3e+02 Score=28.33 Aligned_cols=28 Identities=11% Similarity=0.143 Sum_probs=18.6
Q ss_pred CeEEEEechHHHHHHHHHHHHHCCCcEE
Q psy7773 889 HRVLMFCQMTQLMTILEDYFIWRDFSYL 916 (1281)
Q Consensus 889 ~kvLIFsq~~~~ld~L~~~L~~~g~~~~ 916 (1281)
.+|||..........|...|...|+.+.
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~ 31 (155)
T 1qkk_A 4 PSVFLIDDDRDLRKAMQQTLELAGFTVS 31 (155)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCcEEE
Confidence 4567777777777777777766666544
No 383
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=22.30 E-value=63 Score=38.36 Aligned_cols=58 Identities=2% Similarity=-0.235 Sum_probs=38.0
Q ss_pred HHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHH
Q psy7773 554 LEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLE 613 (1281)
Q Consensus 554 v~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~l~~W~~E 613 (1281)
+..++.-+..+.-.+|+..+|+|||..++.++..+... ...++|++.---...+....
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~--~g~~vl~~s~E~s~~~l~~r 289 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA--MGKKVGLAMLEESVEETAED 289 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT--SCCCEEEEESSSCHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHh--cCCcEEEEeccCCHHHHHHH
Confidence 44444333444456899999999999998888776522 13588888775544444443
No 384
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=22.28 E-value=2.5e+02 Score=25.59 Aligned_cols=97 Identities=15% Similarity=0.109 Sum_probs=55.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcC--CCCCceEEEEeccccccCC--CCCCCCE
Q psy7773 184 TKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNE--PESKYFIFLLSTRAGGLGL--NLQAADT 259 (1281)
Q Consensus 184 ~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~--~~~~~~vll~st~~~~~Gl--nL~~a~~ 259 (1281)
.|-.+..++.....+..+ ....+.++.++-.++...-..++..++. ....+.|++++......-+ ....+..
T Consensus 29 ~g~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~ 104 (140)
T 3grc_A 29 GGFDSDMVHSAAQALEQV----ARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAV 104 (140)
T ss_dssp TTCEEEEECSHHHHHHHH----HHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCC
T ss_pred CCCeEEEECCHHHHHHHH----HhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCC
Confidence 455666666555554444 4456778888766665455556666654 2234567777654322111 2222233
Q ss_pred EEEeCCCCCcchhhHHhHhhhhcCC
Q psy7773 260 VIIFDSDWNPHQDLQAQDRAHRIGQ 284 (1281)
Q Consensus 260 vi~~d~~wnp~~~~Qa~gR~~R~Gq 284 (1281)
.-++.-|.++....+++.++.+-+.
T Consensus 105 ~~~l~kP~~~~~l~~~i~~~l~~~~ 129 (140)
T 3grc_A 105 STWLEKPIDENLLILSLHRAIDNMA 129 (140)
T ss_dssp CEEECSSCCHHHHHHHHHHHHHHHC
T ss_pred CEEEeCCCCHHHHHHHHHHHHHhcC
Confidence 3345567888888888888776543
No 385
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=22.18 E-value=80 Score=37.95 Aligned_cols=42 Identities=24% Similarity=0.241 Sum_probs=29.0
Q ss_pred CCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCC-CEEEEeCCc
Q psy7773 564 NLNGILADEMGLGKTVQTIALLTYLMEKKKNLG-PYLVIVPLS 605 (1281)
Q Consensus 564 ~~~gILademGlGKTi~ai~ll~~l~~~~~~~~-~~LIV~P~s 605 (1281)
..+.+++-.||+|||...-+++..++....... .+++|=|..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 346789999999999999888888874433222 344444553
No 386
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=22.15 E-value=1.9e+02 Score=34.21 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=24.2
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeC
Q psy7773 568 ILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVP 603 (1281)
Q Consensus 568 ILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P 603 (1281)
+++-..|+|||..+..++.++... ..++++|..
T Consensus 105 ~ivG~~GvGKTTl~~kLA~~l~~~---G~kVllVd~ 137 (504)
T 2j37_W 105 MFVGLQGSGKTTTCSKLAYYYQRK---GWKTCLICA 137 (504)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEec
Confidence 456678999999999998887633 235666665
No 387
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=22.15 E-value=1.4e+02 Score=26.97 Aligned_cols=49 Identities=12% Similarity=0.097 Sum_probs=36.4
Q ss_pred CCeEEEEec------hHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcC
Q psy7773 888 KHRVLMFCQ------MTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNE 936 (1281)
Q Consensus 888 ~~kvLIFsq------~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~ 936 (1281)
.++|+||+. +.........+|...|++|..++=......+..+......
T Consensus 17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~ 71 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNW 71 (109)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTC
T ss_pred cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCC
Confidence 457999998 5788888999999999999888765555555555444433
No 388
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=21.99 E-value=1.1e+02 Score=27.38 Aligned_cols=38 Identities=11% Similarity=0.133 Sum_probs=31.4
Q ss_pred hCCCeEEEEeccHHHHHHHHHHHHhCCCc-EEEecCCCC
Q psy7773 183 ETKHRVLMFCQMTQLMTILEDYFIWRDFS-YLRLDGTTK 220 (1281)
Q Consensus 183 ~~~~kvlIFs~~~~~~~~l~~~l~~~g~~-~~~~~g~~~ 220 (1281)
..+..|||||............|...|+. +..++|++.
T Consensus 50 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 50 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 45678999999887788888899999996 778898765
No 389
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=21.99 E-value=1.7e+02 Score=27.41 Aligned_cols=41 Identities=15% Similarity=0.073 Sum_probs=23.8
Q ss_pred cCceeEEEEeCCccccccchHHHHHHHh--hhccCcEEEeecCC
Q psy7773 664 KIQWKCMIIDEGHRMKNHHCKLTQTLNT--FYNSSHRVLLTGTP 705 (1281)
Q Consensus 664 ~~~w~~vIvDEaHr~kn~~s~~~~~l~~--~~~~~~rllLTgTP 705 (1281)
...+++||+|=. --......+.+.++. .......+++|+..
T Consensus 57 ~~~~dliilD~~-l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~ 99 (152)
T 3heb_A 57 AGRAQLVLLDLN-LPDMTGIDILKLVKENPHTRRSPVVILTTTD 99 (152)
T ss_dssp TTCBEEEEECSB-CSSSBHHHHHHHHHHSTTTTTSCEEEEESCC
T ss_pred cCCCCEEEEeCC-CCCCcHHHHHHHHHhcccccCCCEEEEecCC
Confidence 456899999832 112223345555655 23445678888865
No 390
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=21.62 E-value=3.8e+02 Score=24.27 Aligned_cols=95 Identities=7% Similarity=-0.036 Sum_probs=53.2
Q ss_pred cCCe-EEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcC--CCCCeEEEEEeccccccc-cCc--ccC
Q psy7773 887 TKHR-VLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNE--PESKYFIFLLSTRAGGLG-LNL--QAA 960 (1281)
Q Consensus 887 ~~~k-vLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~--~~~~~~v~LlsT~agg~G-lNL--~~a 960 (1281)
.+.. |..++.....+..+. ...+..+.++-.++...-..++..... ....+.|+++|......- ... .+|
T Consensus 32 ~~~~~v~~~~~~~~a~~~l~----~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~ 107 (143)
T 3cnb_A 32 FPYAKIKIAYNPFDAGDLLH----TVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNVSRIVALGA 107 (143)
T ss_dssp CTTCEEEEECSHHHHHHHHH----HTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTC
T ss_pred cCccEEEEECCHHHHHHHHH----hcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCCHHHHHHHHhcCC
Confidence 4556 555555555554443 345777888876655444555555544 234455666664432211 111 124
Q ss_pred CEEEEeCCCCChhhhhhHhHhHHhhCC
Q psy7773 961 DTVIIFDSDWNPHQDLQAQDRAHRIGQ 987 (1281)
Q Consensus 961 d~VI~~D~~wnp~~~~Qa~gR~~RiGQ 987 (1281)
+.++ .-|.++....+++.++.+.++
T Consensus 108 ~~~l--~kP~~~~~l~~~i~~~~~~~~ 132 (143)
T 3cnb_A 108 ETCF--GKPLNFTLLEKTIKQLVEQKK 132 (143)
T ss_dssp SEEE--ESSCCHHHHHHHHHHHHHTTC
T ss_pred cEEE--eCCCCHHHHHHHHHHHHHhhc
Confidence 4433 357888888888888876554
No 391
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=21.42 E-value=4.5e+02 Score=25.66 Aligned_cols=78 Identities=10% Similarity=0.124 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhhCCCeEEEEeccHHHHHHHHHHHHhCCCcEEEecCCCCHHHHHHHHHHhcCCCCCceEEEEeccccccC
Q psy7773 172 ELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLG 251 (1281)
Q Consensus 172 ~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~l~~~g~~~~~~~g~~~~~~R~~~i~~F~~~~~~~~vll~st~~~~~G 251 (1281)
..+.+.+.........+.|.+........|...|...|+++..+++... .| ... | .+.|--.+-|
T Consensus 48 ~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~---~~~--v-~v~t~~~~KG 112 (174)
T 3dmn_A 48 DQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RL---APG--V-IVVPSFLAKG 112 (174)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CC---CSS--E-EEEEGGGCTT
T ss_pred HHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------cc---CCC--e-EEEEccccCC
Confidence 3444444442233567888888888899999999999999988876553 12 223 3 4445556677
Q ss_pred CCCCCCCEEEEeCCCC
Q psy7773 252 LNLQAADTVIIFDSDW 267 (1281)
Q Consensus 252 lnL~~a~~vi~~d~~w 267 (1281)
+- .++||++++..
T Consensus 113 lE---f~~V~~~~~~~ 125 (174)
T 3dmn_A 113 LE---FDAVIVWNANQ 125 (174)
T ss_dssp CC---EEEEEEETCBT
T ss_pred cC---CCEEEEecCCc
Confidence 65 67888888764
No 392
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=21.08 E-value=3.2e+02 Score=27.12 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=42.6
Q ss_pred cEEEEeCCHHHHHHHHhhhccCCccEEEechHHHhhcccccccCceeEEEEeCCccccccchHHHHHHHhhhccCcEEEe
Q psy7773 622 NVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLL 701 (1281)
Q Consensus 622 ~~~~~~g~~~~r~~~~~~~~~~~~~vvItTye~l~~~~~~l~~~~w~~vIvDEaHr~kn~~s~~~~~l~~~~~~~~rllL 701 (1281)
++++....+..+..+.......++.|..++ ........+....+++||+|=.- -......+.+.+....+....+++
T Consensus 6 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~--~~~~al~~~~~~~~dlvl~D~~l-p~~~g~~~~~~l~~~~~~~~ii~l 82 (208)
T 1yio_A 6 TVFVVDDDMSVREGLRNLLRSAGFEVETFD--CASTFLEHRRPEQHGCLVLDMRM-PGMSGIELQEQLTAISDGIPIVFI 82 (208)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEES--SHHHHHHHCCTTSCEEEEEESCC-SSSCHHHHHHHHHHTTCCCCEEEE
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCceEEEcC--CHHHHHHhhhccCCCEEEEeCCC-CCCCHHHHHHHHHhcCCCCCEEEE
Confidence 344444444444444333333344444322 11111223445578999999422 112233455556554455677899
Q ss_pred ecCCCCCCh
Q psy7773 702 TGTPLQNKL 710 (1281)
Q Consensus 702 TgTPl~n~~ 710 (1281)
|+.+-....
T Consensus 83 s~~~~~~~~ 91 (208)
T 1yio_A 83 TAHGDIPMT 91 (208)
T ss_dssp ESCTTSCCC
T ss_pred eCCCCHHHH
Confidence 987654433
No 393
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=20.96 E-value=2e+02 Score=26.27 Aligned_cols=93 Identities=9% Similarity=0.009 Sum_probs=47.8
Q ss_pred cCCeEEEEechHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHHHhhcCCCCCeEEEEEeccccccc-cCcc--cCCEE
Q psy7773 887 TKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLG-LNLQ--AADTV 963 (1281)
Q Consensus 887 ~~~kvLIFsq~~~~ld~L~~~L~~~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~~v~LlsT~agg~G-lNL~--~ad~V 963 (1281)
.+..|..++.....+..+.. ..+..+.++-.++...-..++...+.....+.|+++|......- .... +|+.
T Consensus 30 ~~~~v~~~~~~~~a~~~l~~----~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~- 104 (137)
T 3hdg_A 30 HFPEVWSAGDGEEGERLFGL----HAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVISAFSEMKYFIKAIELGVHL- 104 (137)
T ss_dssp TCSCEEEESSHHHHHHHHHH----HCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECCCCCCHHHHHHHHHHCCSE-
T ss_pred cCcEEEEECCHHHHHHHHhc----cCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEecCcChHHHHHHHhCCcce-
Confidence 34456666666555555433 35667777766555444445554443233444555554332111 1111 2333
Q ss_pred EEeCCCCChhhhhhHhHhHHhh
Q psy7773 964 IIFDSDWNPHQDLQAQDRAHRI 985 (1281)
Q Consensus 964 I~~D~~wnp~~~~Qa~gR~~Ri 985 (1281)
++--|.++....+++.++.+-
T Consensus 105 -~l~kP~~~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 105 -FLPKPIEPGRLMETLEDFRHI 125 (137)
T ss_dssp -ECCSSCCHHHHHHHHHHHHHH
T ss_pred -eEcCCCCHHHHHHHHHHHHHH
Confidence 344577777777777777653
No 394
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=20.82 E-value=4.4e+02 Score=29.95 Aligned_cols=40 Identities=23% Similarity=0.062 Sum_probs=25.7
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHh---cCCCCCEEEEeCCcc
Q psy7773 567 GILADEMGLGKTVQTIALLTYLMEK---KKNLGPYLVIVPLST 606 (1281)
Q Consensus 567 gILademGlGKTi~ai~ll~~l~~~---~~~~~~~LIV~P~s~ 606 (1281)
.+|+-+.|+|||..+..++...... .+..+++++|.-...
T Consensus 181 ~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~ 223 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT 223 (400)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred EEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc
Confidence 4688899999998877655443211 113456788776554
No 395
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=20.67 E-value=1.9e+02 Score=29.37 Aligned_cols=89 Identities=15% Similarity=0.124 Sum_probs=48.8
Q ss_pred cccchHHH-HHHHhhhhh--hcCCeEEEEechHHHHHHHHHHHHH----CCCcEEEEeCCCChHHHHHHHHhhcCCCCCe
Q psy7773 869 RTSGKFEL-LDRILPKFK--ETKHRVLMFCQMTQLMTILEDYFIW----RDFSYLRLDGTTKSEDRGELLRKFNEPESKY 941 (1281)
Q Consensus 869 ~~s~K~~~-L~~lL~~~~--~~~~kvLIFsq~~~~ld~L~~~L~~----~g~~~~~l~G~~~~~~R~~~i~~Fn~~~~~~ 941 (1281)
..+||-.. +.-++..+. ..+.++||.+.....+..+...+.. .++.+..++|+.+....... +.. +
T Consensus 60 TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~----~ 132 (224)
T 1qde_A 60 SGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LRD----A 132 (224)
T ss_dssp TTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CTT----C
T ss_pred CCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CCC----C
Confidence 36888865 455555443 2456899999998877766665543 47888999998775544322 222 3
Q ss_pred EEEEEecccc------ccccCcccCCEEEE
Q psy7773 942 FIFLLSTRAG------GLGLNLQAADTVII 965 (1281)
Q Consensus 942 ~v~LlsT~ag------g~GlNL~~ad~VI~ 965 (1281)
.| +++|... ...+++...+.||+
T Consensus 133 ~i-iv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 133 QI-VVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp SE-EEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CE-EEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 34 5555321 22455666677665
No 396
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=20.52 E-value=1e+02 Score=44.38 Aligned_cols=62 Identities=16% Similarity=0.068 Sum_probs=40.3
Q ss_pred cccHHHHHHHHHHHHhhcCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCEEEEeCCcc
Q psy7773 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLST 606 (1281)
Q Consensus 545 ~L~~yQ~~gv~~l~~~~~~~~~gILademGlGKTi~ai~ll~~l~~~~~~~~~~LIV~P~s~ 606 (1281)
.+.+++..-+-.+......+.+.+|..++|+|||...=.++..+-...+....+.++-|.++
T Consensus 904 ~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~~ 965 (2695)
T 4akg_A 904 SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVL 965 (2695)
T ss_dssp CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTTS
T ss_pred cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence 44556655555666666677788999999999998766555544322232234566777755
No 397
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=20.51 E-value=73 Score=31.84 Aligned_cols=26 Identities=15% Similarity=0.074 Sum_probs=19.4
Q ss_pred CCCCeEEecCCCCCHHHHHHHHHHHH
Q psy7773 563 NNLNGILADEMGLGKTVQTIALLTYL 588 (1281)
Q Consensus 563 ~~~~gILademGlGKTi~ai~ll~~l 588 (1281)
++...+|.-.+|+|||.++-.+...+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 44456788899999999887766544
No 398
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=20.44 E-value=62 Score=32.11 Aligned_cols=24 Identities=33% Similarity=0.221 Sum_probs=18.9
Q ss_pred CCeEEecCCCCCHHHHHHHHHHHH
Q psy7773 565 LNGILADEMGLGKTVQTIALLTYL 588 (1281)
Q Consensus 565 ~~gILademGlGKTi~ai~ll~~l 588 (1281)
...+|.-.+|+|||.++-.+...+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 356788899999999887776554
No 399
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=20.09 E-value=1.3e+02 Score=27.10 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=9.6
Q ss_pred CCCCCcchhhHHhHhhhh
Q psy7773 264 DSDWNPHQDLQAQDRAHR 281 (1281)
Q Consensus 264 d~~wnp~~~~Qa~gR~~R 281 (1281)
.-|+++....+++.++.+
T Consensus 103 ~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 103 EKPFEDTVIIEAIERASE 120 (126)
T ss_dssp ESSCCHHHHHHHHHHHHT
T ss_pred eCCCCHHHHHHHHHHHHH
Confidence 335555555555555544
Done!