RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7773
(1281 letters)
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 230
Score = 155 bits (393), Expect = 2e-43
Identities = 78/242 (32%), Positives = 126/242 (52%), Gaps = 22/242 (9%)
Query: 542 VNGKLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVI 601
+ L+ YQIKG WM + LAD+MGLGKT+QTIA+ + ++ + P LVI
Sbjct: 9 IKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENEL-TPSLVI 67
Query: 602 VPLSTLSNWVLEFEKWAPSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSV 661
PLS L NW E K+AP + + ++K ++++LTTY +++D
Sbjct: 68 CPLSVLKNWEEELSKFAPHLRFAVFHED-------RSKIKLEDYDIILTTYAVLLRDTR- 119
Query: 662 LSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLTGTPLQNKLPELWALLNFLL 721
L +++WK ++IDE +KN K+ + + S +R+ LTGTP++NK+ +LW+++ FL
Sbjct: 120 LKEVEWKYIVIDEAQNIKNPQTKIFKAVK-ELKSKYRIALTGTPIENKVDDLWSIMTFLN 178
Query: 722 PSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKKE--VESQ 779
P + S S F+ F P L ++ PF+LRR K + + +
Sbjct: 179 PGLLGSYSEFKSKFATPIKKGDNMA----------KEELKAIISPFILRRTKYDKAIIND 228
Query: 780 LP 781
LP
Sbjct: 229 LP 230
Score = 56.2 bits (134), Expect = 5e-09
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 1 TPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKV 60
TP++NK+ +LW+++ FL P + S S F+ F P L +
Sbjct: 161 TPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMA----------KEELKAI 210
Query: 61 LRPFLLRRLKKE--VESQLP 78
+ PF+LRR K + + + LP
Sbjct: 211 ISPFILRRTKYDKAIINDLP 230
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 151 bits (381), Expect = 2e-40
Identities = 91/330 (27%), Positives = 154/330 (46%), Gaps = 19/330 (5%)
Query: 779 QLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLC 838
LP K+E ++ C+++ LQK LY+ + + E +TG+ +L ++I L+KLC
Sbjct: 8 YLPVKIEQVVCCNLTPLQKELYKLFLKQAKPV----ESLQTGKISVSSL-SSITSLKKLC 62
Query: 839 NHPFMFQNIEEKYCQHIGQNNTVVSGPDIY-------RTSGKFELLDRILPKFK-ETKHR 890
NHP + E+ G + + P Y + SGK +LD IL + T +
Sbjct: 63 NHPALIY--EKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDK 120
Query: 891 VLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 950
V++ TQ + + E R + Y+RLDGT + R +++ +FN P S FIF+LS++A
Sbjct: 121 VVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKA 180
Query: 951 GGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAA 1010
GG GLNL A+ +++FD DWNP D QA R R GQK + RL++ ++EE+IL
Sbjct: 181 GGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQ 240
Query: 1011 RYKLNMDEKVIQAGMFDQKSTGSERHEFLQTILHQDDEEEEE----NEVPDDETVNQLIA 1066
+K + V+ ++ L ++ + + + + V
Sbjct: 241 AHKKALSSCVVDEEQDVERHFSLGELRELFSLNEKTLSDTHDRFRCRRCVNGRQVRPPPD 300
Query: 1067 RTEDELTLFQKMDAERRKGETKPRLVEIKE 1096
++ L ++G P L +
Sbjct: 301 DSDCTCDLSNWHHCADKRGLRDPVLQASWD 330
Score = 142 bits (359), Expect = 2e-37
Identities = 84/249 (33%), Positives = 133/249 (53%), Gaps = 15/249 (6%)
Query: 76 QLPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLC 135
LP K+E ++ C+++ LQK LY+ + + E +TG+ +L ++I L+KLC
Sbjct: 8 YLPVKIEQVVCCNLTPLQKELYKLFLKQAKPV----ESLQTGKISVSSL-SSITSLKKLC 62
Query: 136 NHPFMFQNIEEKYCQHIGQNNTVVSGPDIY-------RTSGKFELLDRILPKFK-ETKHR 187
NHP + E+ G + + P Y + SGK +LD IL + T +
Sbjct: 63 NHPALIY--EKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDK 120
Query: 188 VLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRA 247
V++ TQ + + E R + Y+RLDGT + R +++ +FN P S FIF+LS++A
Sbjct: 121 VVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKA 180
Query: 248 GGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAA 307
GG GLNL A+ +++FD DWNP D QA R R GQK + RL++ ++EE+IL
Sbjct: 181 GGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQ 240
Query: 308 RYKLNMDEK 316
+K +
Sbjct: 241 AHKKALSSC 249
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 298
Score = 146 bits (369), Expect = 2e-39
Identities = 65/247 (26%), Positives = 113/247 (45%), Gaps = 19/247 (7%)
Query: 543 NGKLKEYQIKGLEWMVSLY-----NNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGP 597
+ L+ +Q +G++++ N+ I+ADEMGLGKT+Q I L+ L+++ + P
Sbjct: 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKP 112
Query: 598 Y----LVIVPLSTLSNWVLEFEKWAP-SANVVAYKGSPLARRA------LQGRMKNSKFN 646
+V+ P S + NW E KW VA G + +
Sbjct: 113 EIDKVIVVSPSSLVRNWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTP 172
Query: 647 VLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLTGTPL 706
+L+ +YE VL K + +I DEGHR+KN + N+ RVL++GTP+
Sbjct: 173 ILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLA-LNSMNAQRRVLISGTPI 231
Query: 707 QNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEK--VELNEEETILIIRRLHKVL 764
QN L E ++L++F+ I + F++ F P + + + ++ L ++
Sbjct: 232 QNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIV 291
Query: 765 RPFLLRR 771
L+RR
Sbjct: 292 NRCLIRR 298
Score = 57.4 bits (137), Expect = 3e-09
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 1 TPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATTGEK--VELNEEETILIIRRLH 58
TP+QN L E ++L++F+ I + F++ F P + + + ++ L
Sbjct: 229 TPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELI 288
Query: 59 KVLRPFLLRR 68
++ L+RR
Sbjct: 289 SIVNRCLIRR 298
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 244
Score = 104 bits (258), Expect = 3e-25
Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 23/243 (9%)
Query: 783 KVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPF 842
K+E + C+++ Q +Y+ D K + +T+++L+++ +HP
Sbjct: 1 KIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKR----KGMILSTLLKLKQIVDHPA 56
Query: 843 MFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMT 902
+ + E+ + K I+ + + ++ +F Q +
Sbjct: 57 LLKGGEQSVRRSG-----------------KMIRTMEIIEEALDEGDKIAIFTQFVDMGK 99
Query: 903 ILEDYFIWRDF-SYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAAD 961
I+ + L G ++R +++ KF S FI L S +AGG G+NL +A+
Sbjct: 100 IIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVL-SVKAGGFGINLTSAN 158
Query: 962 TVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDEKVI 1021
VI FD WNP + QA DR +RIGQ V V +LI+V ++EE+I +K ++ + +I
Sbjct: 159 RVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDII 218
Query: 1022 QAG 1024
+G
Sbjct: 219 SSG 221
Score = 98.6 bits (244), Expect = 2e-23
Identities = 58/238 (24%), Positives = 107/238 (44%), Gaps = 23/238 (9%)
Query: 80 KVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCNHPF 139
K+E + C+++ Q +Y+ D K + +T+++L+++ +HP
Sbjct: 1 KIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKR----KGMILSTLLKLKQIVDHPA 56
Query: 140 MFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMT 199
+ + E+ + K I+ + + ++ +F Q +
Sbjct: 57 LLKGGEQSVRRSG-----------------KMIRTMEIIEEALDEGDKIAIFTQFVDMGK 99
Query: 200 ILEDYFIWRDF-SYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQAAD 258
I+ + L G ++R +++ KF S FI L S +AGG G+NL +A+
Sbjct: 100 IIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVL-SVKAGGFGINLTSAN 158
Query: 259 TVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAARYKLNMDEK 316
VI FD WNP + QA DR +RIGQ V V +LI+V ++EE+I +K ++ +
Sbjct: 159 RVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKD 216
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 90.7 bits (224), Expect = 2e-20
Identities = 45/287 (15%), Positives = 104/287 (36%), Gaps = 26/287 (9%)
Query: 41 EKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHL 100
+V+L E + + L ++LR L + + L I K ++ +++ + +
Sbjct: 7 VRVDLPEIYKE-VRKLLREMLRDALKPLAETGL---LESSSPDIPKKEVLRAGQIINEEM 62
Query: 101 ----HNRGILLTDGSEKGKTGEGGARALKNTIVQLRK-LCNHPFMFQNIEEKYCQHIGQN 155
H+ LL + K + LR + + K + I +
Sbjct: 63 AKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSD 122
Query: 156 -------NTVVSGPDIYRTSGKFELLDRILPKF--KETKHRVLMFCQMTQLMTILEDYFI 206
+ +V +I K + L I+ + ++ ++++F + + + +
Sbjct: 123 KRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELV 182
Query: 207 WRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFI-----FLLSTRAGGLGLNLQAADTVI 261
R G E+ L ++ + F L++T G GL++ D V+
Sbjct: 183 KDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVV 242
Query: 262 IFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAAR 308
++ + + +Q R R G+ RV+ L+ + +E ++R
Sbjct: 243 FYEPVPSAIRSIQ---RRGRTGRHMPGRVIILMAKGTRDEAYYWSSR 286
Score = 90.7 bits (224), Expect = 2e-20
Identities = 45/287 (15%), Positives = 104/287 (36%), Gaps = 26/287 (9%)
Query: 744 EKVELNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYIIKCDMSGLQKLLYQHL 803
+V+L E + + L ++LR L + + L I K ++ +++ + +
Sbjct: 7 VRVDLPEIYKE-VRKLLREMLRDALKPLAETGL---LESSSPDIPKKEVLRAGQIINEEM 62
Query: 804 ----HNRGILLTDGSEKGKTGEGGARALKNTIVQLRK-LCNHPFMFQNIEEKYCQHIGQN 858
H+ LL + K + LR + + K + I +
Sbjct: 63 AKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSD 122
Query: 859 -------NTVVSGPDIYRTSGKFELLDRILPKF--KETKHRVLMFCQMTQLMTILEDYFI 909
+ +V +I K + L I+ + ++ ++++F + + + +
Sbjct: 123 KRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELV 182
Query: 910 WRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFI-----FLLSTRAGGLGLNLQAADTVI 964
R G E+ L ++ + F L++T G GL++ D V+
Sbjct: 183 KDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVV 242
Query: 965 IFDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLITVNSVEERILAAAR 1011
++ + + +Q R R G+ RV+ L+ + +E ++R
Sbjct: 243 FYEPVPSAIRSIQ---RRGRTGRHMPGRVIILMAKGTRDEAYYWSSR 286
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 65.3 bits (158), Expect = 2e-12
Identities = 31/223 (13%), Positives = 73/223 (32%), Gaps = 27/223 (12%)
Query: 77 LPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCN 136
L + I ++ +++ Y+ +
Sbjct: 3 LAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIV------MASGY 56
Query: 137 HPFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQ 196
++ + N+ K L IL + ++ ++++F + +
Sbjct: 57 DERAYEALRAWEEARRIAFNS----------KNKIRKLREILERHRK--DKIIIFTRHNE 104
Query: 197 LMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQA 256
L+ Y I + F + T E+R E+L F F ++S++ G+++
Sbjct: 105 LV-----YRISKVFLIPAITHRTSREEREEILEGFRT---GRFRAIVSSQVLDEGIDVPD 156
Query: 257 ADTVIIFDSDWNPHQDLQAQDRAHRIGQ-KNEVRVLRLITVNS 298
A+ +I + + +Q R R + K E + LI+ +
Sbjct: 157 ANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGT 199
Score = 65.3 bits (158), Expect = 2e-12
Identities = 31/223 (13%), Positives = 73/223 (32%), Gaps = 27/223 (12%)
Query: 780 LPEKVEYIIKCDMSGLQKLLYQHLHNRGILLTDGSEKGKTGEGGARALKNTIVQLRKLCN 839
L + I ++ +++ Y+ +
Sbjct: 3 LAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIV------MASGY 56
Query: 840 HPFMFQNIEEKYCQHIGQNNTVVSGPDIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQ 899
++ + N+ K L IL + ++ ++++F + +
Sbjct: 57 DERAYEALRAWEEARRIAFNS----------KNKIRKLREILERHRK--DKIIIFTRHNE 104
Query: 900 LMTILEDYFIWRDFSYLRLDGTTKSEDRGELLRKFNEPESKYFIFLLSTRAGGLGLNLQA 959
L+ Y I + F + T E+R E+L F F ++S++ G+++
Sbjct: 105 LV-----YRISKVFLIPAITHRTSREEREEILEGFRT---GRFRAIVSSQVLDEGIDVPD 156
Query: 960 ADTVIIFDSDWNPHQDLQAQDRAHRIGQ-KNEVRVLRLITVNS 1001
A+ +I + + +Q R R + K E + LI+ +
Sbjct: 157 ANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGT 199
>d2v0fa1 d.76.2.1 (A:2629-2715) Chromodomain-helicase-DNA-binding
protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 56.4 bits (136), Expect = 1e-10
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 426 GNMDKLDLDESSQLEDLRITVKETNSDNKLRGEDAPPAKQIKEWLASHPGWEVVMEDSE 484
G+ + LD ++ + R+ V + K+ G APP K + WL +P + V + ++
Sbjct: 1 GSRNPNKLDINTLTGEERVPVVNKRNGKKMGGAMAPPMKDLPRWLEENPEFAVAPDWTD 59
>d2ckca1 d.76.2.1 (A:2563-2622) Chromodomain-helicase-DNA-binding
protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 60
Score = 50.9 bits (122), Expect = 7e-09
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 441 DLRITVKETNSDNKLRGEDAPPAKQIKEWLASHPGWEVVM 480
D RI V +L GEDAP K + EWL HP + V M
Sbjct: 4 DTRIPVINLEDGTRLVGEDAPKNKDLVEWLKLHPTYTVDM 43
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 54.9 bits (131), Expect = 9e-09
Identities = 26/161 (16%), Positives = 48/161 (29%), Gaps = 25/161 (15%)
Query: 545 KLKEYQIKGLEWMVSLYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPL 604
L++YQ K LE + + G + G GKT + + +V+ L
Sbjct: 70 SLRDYQEKALERWL----VDKRGCIVLPTGSGKTHVA-----MAAINELSTPTLIVVPTL 120
Query: 605 STLSNWVLEFEKWAPSANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSK 664
+ W + + ++TY+ + L
Sbjct: 121 ALAEQWKERLGIFGEEYVGEFS------------GRIKELKPLTVSTYDSAYVNAEKLGN 168
Query: 665 IQWKCMIIDEGHRMKNHHCKLTQTLNTFYNSSHRVLLTGTP 705
++ +I DE H + Q + R+ LT T
Sbjct: 169 -RFMLLIFDEVHHLPAE--SYVQIAQMS-IAPFRLGLTATF 205
>d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding
protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 58
Score = 48.7 bits (116), Expect = 4e-08
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 431 LDLDESSQLEDLRITVKETNSDNKLRGEDAPPAKQIKEWLASHPGWEVV 479
LD+D + RI V L GEDAP +++ WL HP + V
Sbjct: 1 LDVDL-----ETRIPVINKVDGTLLVGEDAPRRAELEMWLQGHPEFAVD 44
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId:
10665]}
Length = 282
Score = 41.4 bits (96), Expect = 5e-04
Identities = 32/221 (14%), Positives = 74/221 (33%), Gaps = 13/221 (5%)
Query: 507 KKTEDDEYKDAGEEATYYSIAHTYHEKVTEQASIMVNGKLKEYQIKGLEWMVSLYNNNLN 566
+ D + E +++ N +++ + + L N
Sbjct: 73 DNFGYKAWIDPQINEKEELSRKDFDEWLSKLEIYSGNKRIEPHWYQKDAVFEGLVNRRRI 132
Query: 567 GILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSN-WVLEFEKWAPSANVVA 625
L G+++ L Y +E + L+IVP + L+ +F + ++
Sbjct: 133 LNL--PTSAGRSLIQALLARYYLENYEG--KILIIVPTTALTTQMADDFVDYRLFSH--- 185
Query: 626 YKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMKNHHCKL 685
+ A + + V++ T++ ++K Q+ M+ DE H +
Sbjct: 186 AMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFS-QFGMMMNDECHLATGK--SI 242
Query: 686 TQTLNTFYNSSHRVLLTGTPLQNKLPELWALLNFLLPSIFK 726
+ ++ N + L+G+ K + + IFK
Sbjct: 243 SSIISGLNNCMFKFGLSGSLRDGKANIMQ--YVGMFGEIFK 281
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 39.6 bits (91), Expect = 7e-04
Identities = 30/150 (20%), Positives = 59/150 (39%), Gaps = 10/150 (6%)
Query: 873 KFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLR 932
+FE L R+L K + L+FC+ + L F + G R +++R
Sbjct: 16 RFEALCRLL---KNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIR 72
Query: 933 KFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVR 992
F + + + I +T G+++ + VI + NP + R R G+K +
Sbjct: 73 LFKQKKIRILI---ATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAI 129
Query: 993 VLRLITVNSVEERILAAARYKLNMDEKVIQ 1022
+ +N E + L + + K ++
Sbjct: 130 SI----INRREYKKLRYIERAMKLKIKKLK 155
Score = 39.2 bits (90), Expect = 9e-04
Identities = 30/148 (20%), Positives = 58/148 (39%), Gaps = 10/148 (6%)
Query: 170 KFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRGELLR 229
+FE L R+L K + L+FC+ + L F + G R +++R
Sbjct: 16 RFEALCRLL---KNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIR 72
Query: 230 KFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVR 289
F + + + I +T G+++ + VI + NP + R R G+K +
Sbjct: 73 LFKQKKIRILI---ATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAI 129
Query: 290 VLRLITVNSVEERILAAARYKLNMDEKE 317
+ +N E + L + + K+
Sbjct: 130 SI----INRREYKKLRYIERAMKLKIKK 153
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 40.5 bits (94), Expect = 7e-04
Identities = 24/261 (9%), Positives = 71/261 (27%), Gaps = 26/261 (9%)
Query: 163 DIYRTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSE 222
D+ L IL ++ +++ + + + + + +
Sbjct: 6 DVAVNDESISTLSSIL---EKLGTGGIIYARTGEEAEEIYESL------KNKFRIGIVTA 56
Query: 223 DRGELLRKFNEPESKYFIFLLSTRAG-GLGLNLQ-AADTVIIFDSDWNPHQDLQAQDRAH 280
+ KF E E + I GL+L + +
Sbjct: 57 TKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVT----IEDID 112
Query: 281 RIGQKNEVRVLRLITVNSVEERILAAARYKLNMDEKEYHRNNTARTQKL------NKAII 334
+ + + L ER+L A ++ + + + +I
Sbjct: 113 SLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVI 172
Query: 335 NYHINAEKEQKKEQERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDEYISNLT 394
+ + R+ + + + E +L+ ++ + + +
Sbjct: 173 FPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKLYDIEFKSIDEVDFE 232
Query: 395 QMVKEHKEEQQKKMREEKKKK 415
++ +E E R+ +++
Sbjct: 233 KLSRELDES-----RDRYRRR 248
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 37.0 bits (84), Expect = 0.004
Identities = 24/148 (16%), Positives = 43/148 (29%), Gaps = 13/148 (8%)
Query: 560 LYNNNLNGILADEMGLGKTVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAP 619
+ + +L G GKT L L E + LV+ P + + + E
Sbjct: 3 MLKKGMTTVLDFHPGAGKT--RRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLD 60
Query: 620 SANVVAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRMK 679
+A + + + + W+ +I+DE H +
Sbjct: 61 ---------VKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLD 111
Query: 680 NHHCKLTQTLNTF--YNSSHRVLLTGTP 705
N S +L+T TP
Sbjct: 112 PASIAARGWAAHRARANESATILMTATP 139
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 394
Score = 30.5 bits (68), Expect = 1.4
Identities = 18/123 (14%), Positives = 48/123 (39%), Gaps = 5/123 (4%)
Query: 306 AARYKLNMDEKEYHRNNTARTQKLNKAIINYHINAEKEQKKEQERIEKERMRRLMAEDEE 365
+ + EY + AR + + + Y E Q + + E+ + + +
Sbjct: 232 STEFLQQNPVTEYMKKAEARLLEEQRRVQVY--LHESTQDELARKCEQVLIEKHLEIFHT 289
Query: 366 GYRKLIDQKKD---KRLAFLLSQTDEYISNLTQMVKEHKEEQQKKMREEKKKKKKSIKQK 422
++ L+D K+ R+ L+S+ + + L ++++ H Q E+ + + +
Sbjct: 290 EFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALNDPKM 349
Query: 423 ILD 425
+
Sbjct: 350 YVQ 352
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 28.3 bits (63), Expect = 1.5
Identities = 13/84 (15%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 337 HINAEKEQKKEQERIEKERMRRLMAEDEEGYRKLIDQKKDKR---LAFLLSQTDEYISNL 393
H+N ++ ER + ++R R I + ++ +L + YI ++
Sbjct: 2 HMNVKRRTHNVLERQRRNELKRSFFAL----RDQIPELENNEKAPKVVILKKATAYILSV 57
Query: 394 TQMVKEHKEEQQKKMREEKKKKKK 417
++ E+ + ++ K K
Sbjct: 58 QAEEQKLISEEDLLRKRREQLKHK 81
>d1i3ja_ d.285.1.1 (A:) DNA-binding domain of intron endonuclease
I-TevI {Bacteriophage T4 [TaxId: 10665]}
Length = 96
Score = 28.3 bits (63), Expect = 1.6
Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 398 KEHKEEQQKKMREEKKKKK-KSIKQKILDG 426
+H + + K+ E+ K KK +IK+ DG
Sbjct: 32 HKHSDITKSKISEKMKGKKPSNIKKISCDG 61
>d1vdha_ d.58.4.10 (A:) Polyketide synthase CurD homologue
TTHA1714/TTC1352 {Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 29.8 bits (67), Expect = 1.7
Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 14/94 (14%)
Query: 1080 AERRKGETKPRLVEIKELPDW-------MVKDDDEVENSMYEEEREREKEEALMGRGSRQ 1132
+ KPRL +P M K +N +ER G R+
Sbjct: 119 LDPESPYVKPRL--TPRVPKSGYVCFYPMNKRRQGQDNWYMLPAKERASLMKAHGETGRK 176
Query: 1133 -----RKQVDYTDSLTDQEWLKAIEDDGADDYEE 1161
+ + L D EW + + +++
Sbjct: 177 YQGEVMQVISGAQGLDDWEWGVDLFSEDPVQFKK 210
>d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId:
10760]}
Length = 882
Score = 29.4 bits (65), Expect = 3.3
Identities = 10/77 (12%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 342 KEQKKEQERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDEYISNLTQMVKEHK 401
+ +EQ +E E E +RK+ +++ + I+ L +
Sbjct: 29 ERLAREQLALEHESYEM--GEAR--FRKMFERQLKAGEVADNAAAKPLITTLLPKMIARI 84
Query: 402 EEQQKKMREEKKKKKKS 418
+ ++++ ++ K+ +
Sbjct: 85 NDWFEEVKAKRGKRPTA 101
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of
cytochrome bc1 complex (Ubiquinol-cytochrome c
reductase) {Cow (Bos taurus) [TaxId: 9913]}
Length = 75
Score = 26.5 bits (59), Expect = 4.2
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 612 LEFEKWAPSANVVAYKGSPLARRALQGRMKNSKFNVL 648
+F +V+ Y SP +RA NVL
Sbjct: 2 RQFGHLTRVRHVITYSLSPFEQRAFPHYFSKGIPNVL 38
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 28.0 bits (61), Expect = 4.9
Identities = 26/138 (18%), Positives = 45/138 (32%), Gaps = 14/138 (10%)
Query: 166 RTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRG 225
R KF+ L + T+ + + + S + D K
Sbjct: 17 REEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQK----- 71
Query: 226 ELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQ- 284
E E S L+ST GL++ +I +D N + R+ R G+
Sbjct: 72 ERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRK 131
Query: 285 --------KNEVRVLRLI 294
+++R+LR I
Sbjct: 132 GVAINFVKNDDIRILRDI 149
Score = 28.0 bits (61), Expect = 4.9
Identities = 26/138 (18%), Positives = 45/138 (32%), Gaps = 14/138 (10%)
Query: 869 RTSGKFELLDRILPKFKETKHRVLMFCQMTQLMTILEDYFIWRDFSYLRLDGTTKSEDRG 928
R KF+ L + T+ + + + S + D K
Sbjct: 17 REEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQK----- 71
Query: 929 ELLRKFNEPESKYFIFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQ- 987
E E S L+ST GL++ +I +D N + R+ R G+
Sbjct: 72 ERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRK 131
Query: 988 --------KNEVRVLRLI 997
+++R+LR I
Sbjct: 132 GVAINFVKNDDIRILRDI 149
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 28.5 bits (63), Expect = 5.2
Identities = 13/140 (9%), Positives = 38/140 (27%)
Query: 1105 DDEVENSMYEEEREREKEEALMGRGSRQRKQVDYTDSLTDQEWLKAIEDDGADDYEEEEE 1164
DE ++ ER R + + + + LT E + D +
Sbjct: 130 GDEQRRQRHDLERIRIANDTTLSPEQKAARLAALDAQLTPDERAQQAALHAQQDAVTKIA 189
Query: 1165 EVKPVTKKRGSGKKGKKSYVEETAPEDEEEEKPVKKRRRRKKVQISDEDEDEEDESPKKK 1224
+++ + + A + + + + + + E + + +
Sbjct: 190 DLQKAGATPDQMRAQIAQTLGPEAAARAAQMQQDDEAWQTRYQAYAAERDRIAAQGLAPQ 249
Query: 1225 KRKSTKTPAKDKHKEDDEEK 1244
R + + + E
Sbjct: 250 DRDARIAQLRQQTFTAPGEA 269
>d1xu6a_ g.16.3.1 (A:) Variant surface glycoprotein MITAT 1.2, VSG
221, C-terminal domain {Trypanosoma brucei brucei [TaxId:
5702]}
Length = 80
Score = 26.4 bits (58), Expect = 5.4
Identities = 14/73 (19%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 1202 RRRKKVQISDEDEDEEDESPKKKKRKSTKTPAKDKHKEDDEEKHVVSKRKKKVVEEEEEV 1261
++ K S + E + S KK + K+P K ++ + KK +++EE
Sbjct: 9 TQKHKPAESQQQAAETEGSCNKKDQNECKSPCK----WHNDAE-----NKKCTLDKEEAK 59
Query: 1262 EEAEGEEEEEDDK 1274
+ A+ ++
Sbjct: 60 KVADETAKDGKTG 72
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 193
Score = 28.0 bits (62), Expect = 5.7
Identities = 18/143 (12%), Positives = 55/143 (38%), Gaps = 12/143 (8%)
Query: 312 NMDEKEYHRNNTARTQKLNKAIINYHINAEKEQKKEQERIEKERMRRLMAEDEEGYRKLI 371
+ K + + + ++N+ I K + K+ K +RRL E R L
Sbjct: 28 IFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLS 87
Query: 372 DQKKDKRLAFLLSQTDEYISNLTQMVKEHKEEQQKKMREEKKKKKKSIKQKILDGNMDKL 431
+ L + ++ +++T + ++ + + +++ + D +DK
Sbjct: 88 SSTQASIEIDSLYEGIDFYTSIT------RARFEELNADLFRGTLDPVEKALRDAKLDKS 141
Query: 432 DLDE------SSQLEDLRITVKE 448
+ + S+++ ++ +++
Sbjct: 142 QIHDIVLVGGSTRIPKIQKLLQD 164
>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus
furiosus [TaxId: 2261]}
Length = 395
Score = 28.4 bits (62), Expect = 5.8
Identities = 27/169 (15%), Positives = 51/169 (30%), Gaps = 8/169 (4%)
Query: 665 IQWKCMIIDEGHRMKNHHCKLTQTLNTFYNS--SHRVLLTGTPLQNKLPELWALLNFLLP 722
I + + LT+ + + S TG L +
Sbjct: 203 ISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPENKLSEVR 262
Query: 723 SIFKSCSTFEQWFNAPFATTGEKVELNEEETILIIRRLHKVLRPFLLRRLKK--EVESQL 780
+ N P + + + K R ++ +RL + + +
Sbjct: 263 EAIDRLARIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTK 322
Query: 781 PEKVEYI-IKCDMSGL---QKLLYQHLHNRGILLTDGSEKGKTGEGGAR 825
P+ YI K ++ ++ + LHN +L GS G+ G G R
Sbjct: 323 PQGAFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEYGAGHFR 371
>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus
haemolyticus [TaxId: 726]}
Length = 327
Score = 28.4 bits (62), Expect = 6.1
Identities = 21/186 (11%), Positives = 59/186 (31%), Gaps = 13/186 (6%)
Query: 247 AGGLGLNLQAADTVIIFDSDWNPH--QDLQAQDRAHRIGQKNEVRVLRLITVNSVE---- 300
GG L L++ ++ ++W+ + + + G +V + + +
Sbjct: 21 LGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCAGFP 80
Query: 301 -ERILAAARYKLNMDEKEYHRNNTARTQKLNKAIINYHINAEKEQKKEQERIEKERMRRL 359
+ + + K D + + AR + K + + N + + + +
Sbjct: 81 CQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTM 140
Query: 360 MAEDEEGYRKLIDQK------KDKRLAFLLSQTDEYISNLTQMVKEHKEEQQKKMREEKK 413
D + K+++ K +R+ + + D I N K +
Sbjct: 141 NELDYSFHAKVLNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDS 200
Query: 414 KKKKSI 419
+ + +
Sbjct: 201 EVEHLV 206
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 28.1 bits (63), Expect = 6.2
Identities = 13/66 (19%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 316 KEYHRNNTARTQKLNKA---IINYHINAEKEQKKEQERIEKERMRRLMAEDEEGYRK-LI 371
+ N ++ ++ + + +KEQKK+ EK+++R + EE Y+ +
Sbjct: 76 ESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCEL 135
Query: 372 DQKKDK 377
D ++++
Sbjct: 136 DGRREQ 141
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 27.5 bits (61), Expect = 6.2
Identities = 9/83 (10%), Positives = 33/83 (39%)
Query: 340 AEKEQKKEQERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAFLLSQTDEYISNLTQMVKE 399
E++++ + E + E E + ++ + + + + + + + +
Sbjct: 52 EAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREA 111
Query: 400 HKEEQQKKMREEKKKKKKSIKQK 422
H ++++E+ K ++ K K
Sbjct: 112 HLAAMLERLQEKDKHAEEVRKNK 134
Score = 26.8 bits (59), Expect = 9.0
Identities = 16/112 (14%), Positives = 44/112 (39%), Gaps = 1/112 (0%)
Query: 1161 EEEEEVKPVTKKRGSGKKGKKSYVEETAPEDEEEEKPVKKRRRRKKVQISDEDEDEEDES 1220
E + ++R + + +E + +E + K K+ + + +E+
Sbjct: 28 GVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEEN 87
Query: 1221 PKKKKRKSTKTPAKDKHKEDDEEKHVVSKRKKKVVEEEEEVEEAEGEEEEED 1272
K K K + +++ E H+ + ++ E+++ EE +E ++
Sbjct: 88 NNFIKMAKEKLAQKMESNKENREAHLAAMLERL-QEKDKHAEEVRKNKELKE 138
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 28.1 bits (63), Expect = 6.5
Identities = 8/45 (17%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 334 INYHINAEKEQKKEQERIEKERMRRLMAEDEEGYRK-LIDQKKDK 377
++ + A+ E +K+ + EK +++ + + Y ++D K++
Sbjct: 105 MSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKER 149
>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 26.2 bits (57), Expect = 6.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 390 ISNLTQMVKEHKEEQQKKMREEKKKKKKSIKQKILDG 426
+ LT + H EE QK+ + ++++K+ KQK DG
Sbjct: 31 TAELTSHLNIHNEEFQKRAKRQERRKQLLSKQKYADG 67
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 27.9 bits (61), Expect = 6.7
Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 12/120 (10%)
Query: 566 NGILADEMGLGK-TVQTIALLTYLMEKKKNLGPYLVIVPLSTLSNWVLEFEKWAPSANV- 623
+ G+GK + L ++ K+ + + + K+A A V
Sbjct: 60 SFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVI---QAAETIRKYAEKAGVG 116
Query: 624 -----VAYKGSPLARRALQGRMKNSKFNVLLTTYEFIIKDKSVLSKIQWKCMIIDEGHRM 678
Y G R F +++TT +F+ K L + +D+ +
Sbjct: 117 TENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRELGHF--DFIFVDDVDAI 174
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 26.8 bits (59), Expect = 9.8
Identities = 7/35 (20%), Positives = 21/35 (60%)
Query: 383 LSQTDEYISNLTQMVKEHKEEQQKKMREEKKKKKK 417
LSQ + + ++ +VK+++ + +++ K+K +
Sbjct: 84 LSQLLDIMKSMRNLVKKYEPPRSEEVAVLKQKLDR 118
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.132 0.374
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,792,408
Number of extensions: 241754
Number of successful extensions: 961
Number of sequences better than 10.0: 1
Number of HSP's gapped: 886
Number of HSP's successfully gapped: 113
Length of query: 1281
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1185
Effective length of database: 1,089,516
Effective search space: 1291076460
Effective search space used: 1291076460
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)