BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7774
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain
Of Hdlg5 (Kiaa0583) Protein [homo Sapiens]
Length = 117
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 89 EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRXX 148
EPR + ++ + LGIS+V G GIYV V GS+ + AGL GD++LE+NG +LR
Sbjct: 19 EPRHVKVQ-KGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSA 77
Query: 149 XXXXXXXXXXKPADKVTVLAH 169
+ D +T+LA
Sbjct: 78 TEQQARLIIGQQCDTITILAQ 98
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSP 28
+RSAT Q A ++ Q ++IT+L QY+P
Sbjct: 74 LRSATEQQARLIIGQQCDTITILAQYNP 101
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 90 PRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
P +++ RK ++G+ L GGN VGI+V V S GL GD+IL N D
Sbjct: 8 PSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDF 63
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human
Zo-1
Length = 194
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 90 PRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
P +++ RK ++G+ L GGN VGI+V V S GL GD+IL N D
Sbjct: 1 PSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDF 56
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex
With Connexin-45 Peptide
Length = 468
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 94 MIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
+++ RK ++G+ L GGN VGI+V V S GL GD+IL N D
Sbjct: 4 LVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDF 55
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human
Zo-1 Maguk Protein
Length = 124
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 90 PRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
P +++ RK ++G+ L GGN VGI+V V S GL GD+IL N D
Sbjct: 28 PSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDF 83
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 94 MIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
+++ RK ++G+ L GGN VGI+V V S GL GD+IL N D
Sbjct: 7 LVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDF 58
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad-
Like Protein
Length = 117
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 12/71 (16%)
Query: 88 GEPRFLMIETRKCSNLGISLVGGNAV-----------GIYVHSV-QSGSLGYSAGLRTGD 135
G PR + I +LGIS+VGG V GI++ V + G + L+TGD
Sbjct: 14 GPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGD 73
Query: 136 RILEYNGTDLR 146
+ILE +G DL+
Sbjct: 74 KILEVSGVDLQ 84
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 87 SGEPRFLMIETRKC-SNLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGT 143
SGE R + + K LG S+ GG+ VGIYV V+ GSL GLR GD+IL N
Sbjct: 6 SGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDK 65
Query: 144 DL 145
L
Sbjct: 66 SL 67
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 89 EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGS-LGYSAGLRTGDRILEYNGTDLR 146
EPR ++I R + LG ++VGG + GI++ + +G S LR GD+IL NG DLR
Sbjct: 14 EPRRIVIH-RGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLR 72
Query: 147 XXXXXXXXXXXXKPADKVTVLAH 169
VT++A
Sbjct: 73 NASHEQAAIALKNAGQTVTIIAQ 95
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 42.7 bits (99), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 89 EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR 146
EPR ++I R + LG ++VGG + GI++ + +G +G LR GD+IL NG DLR
Sbjct: 307 EPRRIVIH-RGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLR 365
Query: 147 XXXXXXXXXXXXKPADKVTVLAH 169
VT++A
Sbjct: 366 NASHEQAAIALKNAGQTVTIIAQ 388
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 89 EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGS-LGYSAGLRTGDRILEYNGTDLR 146
EPR ++I R + LG +++GG + GI++ + +G S LR GD+IL NG DLR
Sbjct: 14 EPRRIVIH-RGSTGLGFNIIGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLR 72
Query: 147 XXXXXXXXXXXXKPADKVTVLAH 169
VT++A
Sbjct: 73 NASHEQAAIALKNAGQTVTIIAQ 95
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 81 VCKDERSGEPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGS-LGYSAGLRTGDRIL 138
+ +++ + EPR +++ + + LG ++VGG + GI+V + +G S LR GDRIL
Sbjct: 4 LAEEDFTREPRKIILH-KGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRIL 62
Query: 139 EYNGTDLRXXXXXXXXXXXXKPADKVTVLAH 169
NG +LR + VT++A
Sbjct: 63 SVNGVNLRNATHEQAAAALKRAGQSVTIVAQ 93
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 25/31 (80%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKY 31
+R+AT++ AA+ L++ G S+T++ QY P++Y
Sbjct: 69 LRNATHEQAAAALKRAGQSVTIVAQYRPEEY 99
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 89 EPRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR 146
EPR ++I R + LG ++VGG GI++ + +G +G LR GD+IL NG DLR
Sbjct: 6 EPRRIVIH-RGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLR 64
Query: 147 XXXXXXXXXXXXKPADKVTVLAH 169
VT++A
Sbjct: 65 NASHEQAAIALKNAGQTVTIIAQ 87
>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz
(Mupp-1)
Length = 103
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 86 RSGEPRFLMIETRKCSNLGISLVGGNAVG-----------IYV-HSVQSGSLGYSAGLRT 133
+S +PR + + +LGIS+VGG +G I++ H ++ G + L+
Sbjct: 1 QSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKP 60
Query: 134 GDRILEYNGTDLRXXXXXXXXXXXXKPADKVTVLAHS 170
GDRI+E +G DLR K + V + S
Sbjct: 61 GDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 97
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 89 EPRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGS-LGYSAGLRTGDRILEYNGTDLR 146
EPR ++I R + LG ++VGG GI++ + +G S LR GD+IL NG DLR
Sbjct: 11 EPRRIVIH-RGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLR 69
Query: 147 XXXXXXXXXXXXKPADKVTVLAH 169
VT++A
Sbjct: 70 NASHEQAAIALKNAGQTVTIIAQ 92
>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
Length = 123
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 86 RSGEPRFLMIETRKCSNLGISLVGGNAVG-----------IYV-HSVQSGSLGYSAGLRT 133
+S +PR + + +LGIS+VGG +G I++ H ++ G + L+
Sbjct: 21 QSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKP 80
Query: 134 GDRILEYNGTDLRXXXXXXXXXXXXKPADKVTVLAHS 170
GDRI+E +G DLR K + V + S
Sbjct: 81 GDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 117
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 89 EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR 146
EPR +++ + + LG ++VGG + GI+V + +G +G LR GDRIL NG +LR
Sbjct: 15 EPRKIILH-KGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLR 73
Query: 147 XXXXXXXXXXXXKPADKVTVLAH 169
+ VT++A
Sbjct: 74 NATHEQAAAALKRAGQSVTIVAQ 96
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 25/31 (80%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKY 31
+R+AT++ AA+ L++ G S+T++ QY P++Y
Sbjct: 72 LRNATHEQAAAALKRAGQSVTIVAQYRPEEY 102
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad-
Like Protein
Length = 116
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 93 LMIETRKC-SNLGISLVGGNAV---GIYVHSV-QSGSLGYSAGLRTGDRILEYNGTDLRX 147
++IE K S LG+S+VGG I +H V + G+ L GD+ILE NG DLR
Sbjct: 19 MIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRN 78
Query: 148 XXXXXXXXXXXKPADKVTVLAHSD 171
+ KV ++ + D
Sbjct: 79 SSHEEAITALRQTPQKVRLVVYRD 102
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 84 DERSGEPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGS-LGYSAGLRTGDRILEYN 141
DE + EPR +++ R + LG ++VGG + GI++ + +G S LR GDRI+ N
Sbjct: 2 DEITREPRKVVLH-RGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDRIISVN 60
Query: 142 GTDLRXXXXXXXXXXXXKPADKVTVLAH 169
DLR VT++A
Sbjct: 61 SVDLRAASHEQAAAALKNAGQAVTIVAQ 88
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 89 EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGS-LGYSAGLRTGDRILEYNGTDLR 146
EPR +++ + + LG ++VGG + GI+V + +G S L+ GD+IL NG DLR
Sbjct: 3 EPRKVVLH-KGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELQRGDQILSVNGIDLR 61
Query: 147 XXXXXXXXXXXXKPADKVTVLAH 169
VT++A
Sbjct: 62 GASHEQAAAALKGAGQTVTIIAQ 84
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 90 PRFLMIETRKCSNLGISLVGGNA--VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLR 146
PR + ++ + LG ++ GG A +GI++ V S + AGL+ GD++L N D +
Sbjct: 16 PRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQ 74
>pdb|2EEH|A Chain A, Solution Structure Of First Pdz Domain Of Pdz Domain
Containing Protein 7
Length = 100
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 95 IETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
+E LG S+ GG+ +GI+V V+ GS AGL GD+I E NG L
Sbjct: 16 VEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSL 68
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 89 EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGS-LGYSAGLRTGDRILEYNGTDLR 146
EPR +++ R + LG ++VGG + GI++ + +G S LR GDRI+ N DLR
Sbjct: 4 EPRKVVLH-RGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDRIISVNSVDLR 62
Query: 147 XXXXXXXXXXXXKPADKVTVLAH 169
VT++A
Sbjct: 63 AASHEQAAAALKNAGQAVTIVAQ 85
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
GI++ V+ GSL GL GD+I+E NG D
Sbjct: 28 GIFISHVKPGSLSAEVGLEIGDQIVEVNGVDF 59
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
GI++ V+ GSL GL GD+I+E NG D
Sbjct: 42 GIFISHVKPGSLSAEVGLEIGDQIVEVNGVDF 73
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 36.6 bits (83), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 14/74 (18%)
Query: 87 SGEPRFLMIET------RKCSNLGISLVGGNAV--------GIYVHSVQSGSLGYSAGLR 132
SGEP + E R+ LGIS+ GG GI++ V AG+R
Sbjct: 6 SGEPARIEEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVR 65
Query: 133 TGDRILEYNGTDLR 146
GD++LE NG L+
Sbjct: 66 VGDKLLEVNGVALQ 79
>pdb|1ZUB|A Chain A, Solution Structure Of The Rim1alpha Pdz Domain In Complex
With An Elks1b C-Terminal Peptide
Length = 114
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 103 LGISLVGGNA-----VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL 145
LG+ +VGG +G ++ V+ GSL G LR GD +LE+NG L
Sbjct: 39 LGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPL 87
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 101
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Query: 97 TRKCSNLGISLVGG-------NAVGIYVHSV-QSGSLGYSAGLRTGDRILEYNGTDLR 146
TR S LG ++VGG N GIYV + ++G+ L+ GD+IL NG DL+
Sbjct: 14 TRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLK 71
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Query: 97 TRKCSNLGISLVGG-------NAVGIYVHSV-QSGSLGYSAGLRTGDRILEYNGTDLR 146
TR S LG ++VGG N GIYV + ++G+ L+ GD+IL NG DL+
Sbjct: 24 TRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLK 81
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2 Binding
Protein
Length = 102
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Query: 97 TRKCSNLGISLVGG-------NAVGIYVHSV-QSGSLGYSAGLRTGDRILEYNGTDLR 146
TR S LG ++VGG N GIYV + ++G+ L+ GD+IL NG DL+
Sbjct: 16 TRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLK 73
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 36.2 bits (82), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 102 NLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNG 142
+LG+++ GG +GIY+ V GS +GL+ GD+ILE NG
Sbjct: 33 SLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNG 75
>pdb|2CSS|A Chain A, Solution Structure Of The Pdz Domain Of Human Kiaa0340
Protein
Length = 121
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 103 LGISLVGGNA-----VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL 145
LG+ +VGG +G ++ V+ GSL G LR GD +LE+NG L
Sbjct: 39 LGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPL 87
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1
Length = 97
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 98 RKCSNLGISLVGGNA--------VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLR 146
R+ LGIS+ GG GI++ V AG+R GD++LE NG L+
Sbjct: 11 RQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQ 67
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 35.4 bits (80), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 101 SNLGISLVGGNAV---GIYVHSV-QSGSLGYSAGLRTGDRILEYNGTDLR 146
+ LG+S+VGG+ I +H V + G+ L GD+ILE NG DLR
Sbjct: 15 TGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLR 64
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
GIYV V G AGL+ GD+I++ NG D+
Sbjct: 54 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDM 85
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
GIYV V G AGL+ GD+I++ NG D+
Sbjct: 54 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDM 85
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
GIYV V G AGL+ GD+I++ NG D+
Sbjct: 54 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDM 85
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 34.3 bits (77), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
GIYV V G AGL+ GD+I++ NG D+
Sbjct: 55 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDM 86
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
Length = 95
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 91 RFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSG-SLGYSAGLRTGDRILEYNGTDLR 146
R + + ++ LGIS+ GG N + I + + G + S LR GD IL NGTDLR
Sbjct: 5 RRVRVVKQEAGGLGISIKGGRENRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLR 63
>pdb|1Q3O|A Chain A, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3O|B Chain B, Crystal Structure Of The Shank Pdz-ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-pdz
Dimerization
pdb|1Q3P|A Chain A, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
pdb|1Q3P|B Chain B, Crystal Structure Of The Shank Pdz-Ligand Complex Reveals
A Class I Pdz Interaction And A Novel Pdz-Pdz
Dimerization
Length = 109
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 116 YVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
Y+ SV G + + AGLR GD ++E NG ++
Sbjct: 48 YLESVDEGGVAWRAGLRMGDFLIEVNGQNV 77
>pdb|3L4F|D Chain D, Crystal Structure Of Betapix Coiled-Coil Domain And Shank
Pdz Complex
Length = 132
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 116 YVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
Y+ SV G + + AGLR GD ++E NG ++
Sbjct: 68 YLESVDEGGVAWRAGLRMGDFLIEVNGQNV 97
>pdb|3QJM|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJM|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|A Chain A, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|B Chain B, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|C Chain C, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|D Chain D, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|E Chain E, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|F Chain F, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|G Chain G, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
pdb|3QJN|H Chain H, Structural Flexibility Of Shank Pdz Domain Is Important
For Its Binding To Different Ligands
Length = 115
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 116 YVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
Y+ SV G + + AGLR GD ++E NG ++
Sbjct: 48 YLESVDEGGVAWRAGLRMGDFLIEVNGQNV 77
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
GIYV V G AGL+ GD+I++ NG D+
Sbjct: 46 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDM 77
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
GIYV V G AGL+ GD+I++ NG D+
Sbjct: 44 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDM 75
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 34.3 bits (77), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
GIYV V G AGL+ GD+I++ NG D+
Sbjct: 65 GIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDM 96
>pdb|2OMJ|A Chain A, Solution Structure Of Larg Pdz Domain
pdb|2OS6|A Chain A, Solution Structure Of Larg Pdz Domain In Complex With C-
Terminal Octa-Peptide Of Plexin B1
Length = 89
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 94 MIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGT 143
+I + + G+++ G N V +V SV+ AG++TGDRI++ NGT
Sbjct: 11 VIIQKDDNGFGLTVSGDNPV--FVQSVKEDGAAMRAGVQTGDRIIKVNGT 58
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 89 EPRFLMIETRKCSNLGISLV-----GGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNG 142
EP + + +K + +G+S+V G + +GIYV SV G G L GD++L +G
Sbjct: 3 EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 62
Query: 143 TDL 145
L
Sbjct: 63 RSL 65
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 89 EPRFLMIETRKCSNLGISLV-----GGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNG 142
EP + + +K + +G+S+V G + +GIYV SV G G L GD++L +G
Sbjct: 3 EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 62
Query: 143 TDL 145
L
Sbjct: 63 RSL 65
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad-
Like Protein
Length = 111
Score = 33.9 bits (76), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 101 SNLGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR 146
S LG +VGG G+ V ++ G L G L+TGD IL+ GT+++
Sbjct: 26 SGLGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQ 72
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSP 28
++ T + A VLR CGNS+ MLV P
Sbjct: 71 VQGMTSEQVAQVLRNCGNSVRMLVARDP 98
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With The
C-Terminal Peptide From Nectin-3
Length = 106
Score = 33.9 bits (76), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 89 EPRFLMIETRKCSNLGISLV-----GGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNG 142
EP + + +K + +G+S+V G + +GIYV SV G G L GD++L +G
Sbjct: 9 EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 68
Query: 143 TDL 145
L
Sbjct: 69 RSL 71
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating
Protein 21
Length = 126
Score = 33.5 bits (75), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 115 IYVHSVQSGSLGYSAGLRTGDRILEYNG 142
I+V V+ G + AGL TGDRI++ NG
Sbjct: 63 IFVKQVKEGGPAFEAGLCTGDRIIKVNG 90
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery Of
Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 33.5 bits (75), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 89 EPRFLMIETRKCSNLGISLV-----GGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNG 142
EP + + +K + +G+S+V G + +GIYV SV G G L GD++L +G
Sbjct: 9 EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 68
Query: 143 TDL 145
L
Sbjct: 69 RSL 71
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 33.5 bits (75), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 91 RFLMIETRKCSNLGISLVGGNA--------VGIYVHSVQSGSLGYSAG-LRTGDRILEYN 141
R + R LG S+ GG GI+V + G + AG L+ GDR+L N
Sbjct: 8 RHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSIN 67
Query: 142 GTDL 145
G D+
Sbjct: 68 GVDV 71
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In Human
Cdna, Kiaa1095
Length = 107
Score = 33.5 bits (75), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 11/63 (17%)
Query: 94 MIETRKCSNLGISLVGG----------NAVGIYVHS-VQSGSLGYSAGLRTGDRILEYNG 142
++ R +LG +++GG ++ GI+V V SG GL+ DRI+E NG
Sbjct: 12 LVLHRDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNG 71
Query: 143 TDL 145
DL
Sbjct: 72 RDL 74
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 33.1 bits (74), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 95 IETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR 146
++ + LG+S+VG N G++V + G + + G L GD+IL NG D+R
Sbjct: 10 LQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVR 63
>pdb|1WFG|A Chain A, Pdz Domain Of Human Rim2b
Length = 131
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 103 LGISLVGGNA-----VGIYVHSVQSGSLGYSAG-LRTGDRILEYNG 142
LG+ +VGG + ++ V+ GSL + G LR GD +LE+NG
Sbjct: 50 LGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNG 95
>pdb|2KRG|A Chain A, Solution Structure Of Human Sodium HYDROGEN EXCHANGE
Regulatory Factor 1(150-358)
Length = 216
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 92 FLMIETRKCS-NLGISLVGGN------AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGT 143
F M+ R C+ G S G N G ++ SV S ++GLR DRI+E NG
Sbjct: 5 FTMLRPRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGV 63
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 98 RKCSNLGISLVGG-----NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL 145
R S LG+ L+ G A G+Y+ ++ GS + G L GDRILE NG+ L
Sbjct: 16 RGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSL 69
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human
Nherf-2 (slc9a3r2)
Length = 88
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
G ++ V+ GS +A LR GDR++E NG ++
Sbjct: 26 GQFIRRVEPGSPAEAAALRAGDRLVEVNGVNV 57
>pdb|1G9O|A Chain A, First Pdz Domain Of The Human Na+H+ EXCHANGER REGULATORY
Factor
Length = 91
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
+G Y+ V+ GS AGL GDR++E NG ++
Sbjct: 27 LGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENV 59
>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1OBZ|B Chain B, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1V1T|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1V1T|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1YBO|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1YBO|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin With
Syndecan Peptide
pdb|1W9E|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9E|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9O|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9O|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9Q|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
pdb|1W9Q|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
Length = 166
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNG 142
GI+V VQ+ S GLR GD++L+ NG
Sbjct: 28 GIFVQLVQANSPASLVGLRFGDQVLQING 56
>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
pdb|1N99|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
Length = 166
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNG 142
GI+V VQ+ S GLR GD++L+ NG
Sbjct: 28 GIFVQLVQANSPASLVGLRFGDQVLQING 56
>pdb|1GQ4|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2ar And Pdgfr
Length = 90
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
+G Y+ V+ GS AGL GDR++E NG ++
Sbjct: 26 LGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENV 58
>pdb|2HE4|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Nherf-2 (Slc9a3r2) Interacting With A Mode 1 Pdz Binding
Motif
Length = 90
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
G Y+ SV GS +GLR DR++E NG ++
Sbjct: 29 GQYIRSVDPGSPAARSGLRAQDRLIEVNGQNV 60
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 62 GTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVG--------GNAV 113
G+ K ++ + LT + V D +S E + +++ G++L GN +
Sbjct: 330 GSTVKIIVERDNKPLTLSAVVTDIKSHEQK---LQSNNPFLYGLALRAFEQESPPHGNVI 386
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYN 141
G+ V S G+ AG+R GD I+ N
Sbjct: 387 GVQVVGASENSAGWRAGIRPGDIIISAN 414
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 62 GTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVG--------GNAV 113
G+ K ++ + LT + V D +S E + +++ G++L GN +
Sbjct: 330 GSTVKIIVERDNKPLTLSAVVTDIKSHEQK---LQSNNPFLYGLALRAFEQESPPHGNVI 386
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYN 141
G+ V S G+ AG+R GD I+ N
Sbjct: 387 GVQVVGASENSAGWRAGIRPGDIIISAN 414
>pdb|1I92|A Chain A, Structural Basis Of The Nherf Pdz1-Cftr Interaction
Length = 91
Score = 32.0 bits (71), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
+G Y+ V+ GS AGL GDR++E NG ++
Sbjct: 27 LGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENV 59
>pdb|1GQ5|A Chain A, Structural Determinants Of The Nherf Interaction With
Beta2- Ar And Pdgfr
Length = 91
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
+G Y+ V+ GS AGL GDR++E NG ++
Sbjct: 27 LGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENV 59
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 62 GTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVG--------GNAV 113
G+ K ++ + LT + V D +S E + +++ G++L GN +
Sbjct: 330 GSTVKIIVERDNKPLTLSAVVTDIKSHEQK---LQSNNPFLYGLALRAFEQESPPHGNVI 386
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYN 141
G+ V S G+ AG+R GD I+ N
Sbjct: 387 GVQVVGASENSAGWRAGIRPGDIIISAN 414
>pdb|2O2T|A Chain A, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
pdb|2O2T|B Chain B, The Crystal Structure Of The 1st Pdz Domain Of Mpdz
Length = 117
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 103 LGISLVGGNA-----VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL 145
LG S+VG + +GI+V +Q GS+ + G L+ D+IL NG L
Sbjct: 34 LGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQAL 82
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho Guanine
Nucleotide Exchange Factor 11
Length = 93
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 115 IYVHSVQSGSLGYSAGLRTGDRILEYNGT 143
+ V SV+ G AG++ GDRI++ NGT
Sbjct: 31 VLVQSVRPGGAAMKAGVKEGDRIIKVNGT 59
>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
pdb|4F8K|B Chain B, Molecular Analysis Of The Interaction Between The
Prostacyclin Receptor And The First Pdz Domain Of Pdzk1
Length = 109
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 88 GEPRFLMIETRKCSNLGISL-VGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLR 146
G PR + ++ N G L + + G + ++ GS AGL GDR+L NG +
Sbjct: 1 GSPRESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVD 60
Query: 147 XXXXXXXXXXXXKPADKVTVLA 168
K + VT+L
Sbjct: 61 KEEHAQVVELVRKSGNSVTLLV 82
>pdb|2KJD|A Chain A, Solution Structure Of Extended Pdz2 Domain From Nherf1
(150- 270)
Length = 128
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 92 FLMIETRKCS-NLGISLVGGN------AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGT 143
F M+ R C+ G S G N G ++ SV S ++GLR DRI+E NG
Sbjct: 5 FTMLRPRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGV 63
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 30.4 bits (67), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 98 RKCSNLGISLVGGNAVG--IYV-HSVQSGSLGYSAGLRTGDRILEYNGT 143
RK + G ++GGN G IY+ H V G+ LR+GD ++ +GT
Sbjct: 10 RKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGT 58
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 30.4 bits (67), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 83 KDERSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGS-LGYSAGLRTGDRILE 139
K + G R +++ LGIS+ GG + V I + + G GL GD IL
Sbjct: 3 KSQGVGPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILA 62
Query: 140 YNGTDLR 146
NG +LR
Sbjct: 63 VNGVNLR 69
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 111 NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR 146
+ +GIY+ + S+ G +R GDRI++ NG +++
Sbjct: 46 DDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQ 82
>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus Pdz
Domain-Containing Protein 1
Length = 114
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 90 PRFLMIETRKCSNLGISL-VGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRXX 148
PR + ++ N G L + + G + ++ GS AGL GDR+L NG +
Sbjct: 14 PRECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKE 73
Query: 149 XXXXXXXXXXKPADKVTVLA 168
K + VT+L
Sbjct: 74 EHAQVVELVRKSGNSVTLLV 93
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 116 YVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
+V +V G AG+R GDRILE NG ++
Sbjct: 46 HVSAVLPGGAADRAGVRKGDRILEVNGVNV 75
>pdb|2D8I|A Chain A, Solution Structure Of The Pdz Domain Of T-Cell Lymphoma
Invasion And Metastasis 1 Varian
Length = 114
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 115 IYVHSVQSGSLGYSAGLRTGDRILEYN 141
+YV+SV+ L GL+ GD ILE N
Sbjct: 46 LYVNSVKETGLASKKGLKAGDEILEIN 72
>pdb|2JXO|A Chain A, Structure Of The Second Pdz Domain Of Nherf-1
Length = 98
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 92 FLMIETRKCS-NLGISLVGGN------AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGT 143
F M+ R C+ G S G N G ++ SV S ++GLR DRI+E NG
Sbjct: 5 FTMLRPRLCTMKKGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGV 63
>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding
Protein 4
Length = 109
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 89 EPRFLMIETRKCSNLGISLVGG----NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYN 141
+P F +I K + LG+ ++GG +Y+H V G Y G L+ GD+++ N
Sbjct: 13 DPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSIN 70
>pdb|3KZD|A Chain A, Crystal Structure Of Free T-Cell Lymphoma Invasion And
Metas Pdz Domain
pdb|3KZE|A Chain A, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
pdb|3KZE|B Chain B, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
pdb|3KZE|C Chain C, Crystal Structure Of T-Cell Lymphoma Invasion And
Metastasis Complex With Ssrkeyya Peptide
Length = 94
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 115 IYVHSVQSGSLGYSAGLRTGDRILEYN 141
+YV+SV+ L GL+ GD ILE N
Sbjct: 37 LYVNSVKETGLASKKGLKAGDEILEIN 63
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide Corresponding
To The C-Terminal Tail Of Girk3
Length = 101
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 116 YVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
+V +V G AG+R GDRILE NG ++
Sbjct: 46 HVSAVLPGGAADRAGVRKGDRILEVNGVNV 75
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 116 YVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
+V +V G AG+R GDRILE NG ++
Sbjct: 46 HVSAVLPGGAADRAGVRKGDRILEVNGVNV 75
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad In
Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 30.0 bits (66), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 114 GIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR 146
GI++ + S + G L+ GDRIL NG D+R
Sbjct: 38 GIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVR 71
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 29.6 bits (65), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 88 GEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGS-LGYSAGLRTGDRILEYNGTD 144
G R +++ LGIS+ GG + V I + + G GL GD IL NG +
Sbjct: 1 GPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVN 60
Query: 145 LR 146
LR
Sbjct: 61 LR 62
>pdb|2OZF|A Chain A, The Crystal Structure Of The 2nd Pdz Domain Of The Human
Nherf-1 (Slc9a3r1)
Length = 92
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGT 143
G ++ SV S ++GLR DRI+E NG
Sbjct: 29 GQFIRSVDPDSPAEASGLRAQDRIVEVNGV 58
>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
pdb|3NGH|B Chain B, Molecular Analysis Of The Interaction Of The Hdl Receptor
Sr-Bi With The Adaptor Protein Pdzk1
Length = 106
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
Query: 90 PRFLMIETRKCSNLGISL-VGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRXX 148
PR + ++ N G L + + G + ++ GS AGL GDR+L NG +
Sbjct: 2 PRESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKE 61
Query: 149 XXXXXXXXXXKPADKVTVLA 168
K + VT+L
Sbjct: 62 EHAQVVELVRKSGNSVTLLV 81
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 5 TYQLAASVLRQCGNSITMLVQY 26
T+ A S+L+QCG T+L++Y
Sbjct: 172 THAEAMSILKQCGQEATLLIEY 193
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRIL 138
G+ +H V GS + AGLR GD IL
Sbjct: 257 GVLIHKVILGSPAHRAGLRPGDVIL 281
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 91 RFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGS-LGYSAGLRTGDRILEYNGTDLR 146
R +++ LGIS+ GG + V I + + G GL GD IL NG +LR
Sbjct: 29 RKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLR 87
>pdb|2PZD|A Chain A, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
pdb|2PZD|B Chain B, Crystal Structure Of The Htra2OMI PDZ DOMAIN BOUND TO A
PHAGE-Derived Ligand (Wtmfwv)
Length = 113
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRIL 138
G+ +H V GS + AGLR GD IL
Sbjct: 36 GVLIHKVILGSPAHRAGLRPGDVIL 60
>pdb|3ID4|A Chain A, Crystal Structure Of Rsep Pdz2 Domain Fused Gkaspv Peptide
Length = 93
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 116 YVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
+ +VQ S AGL+ GDRI++ +G L
Sbjct: 5 VLENVQPNSAASKAGLQAGDRIVKVDGQPL 34
>pdb|3K1R|A Chain A, Structure Of Harmonin Npdz1 In Complex With The Sam-Pbm Of
Sans
Length = 192
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 61 PGTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGGNAVG--IYVH 118
P K ++++ T R+ K+ R ++ LG+S+ GG G +++
Sbjct: 64 PLIPLKHQVEYDQLTPRRSRKLKEVR--------LDRLHPEGLGLSVRGGLEFGCGLFIS 115
Query: 119 SVQSGSLGYSAGLRTGDRILEYNG 142
+ G S GL+ GD I+ NG
Sbjct: 116 HLIKGGQADSVGLQVGDEIVRING 139
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues 450-558)
Length = 111
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 93 LMIETRKCSN-LGISL------VGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTD 144
L I+ +K + LG S+ +GG+A IYV ++ G L+ GDR++E NG D
Sbjct: 13 LNIQLKKGTEGLGFSITSRDVTIGGSAP-IYVKNILPRGAAIQDGRLKAGDRLIEVNGVD 71
Query: 145 L 145
L
Sbjct: 72 L 72
>pdb|3ID3|A Chain A, Crystal Structure Of Rsep Pdz2 I304a Domain
pdb|3ID3|B Chain B, Crystal Structure Of Rsep Pdz2 I304a Domain
Length = 89
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 116 YVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
+ +VQ S AGL+ GDRI++ +G L
Sbjct: 5 VLENVQPNSAASKAGLQAGDRIVKVDGQPL 34
>pdb|3ID2|A Chain A, Crystal Structure Of Rsep Pdz2 Domain
pdb|3ID2|B Chain B, Crystal Structure Of Rsep Pdz2 Domain
Length = 90
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 116 YVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
+ +VQ S AGL+ GDRI++ +G L
Sbjct: 6 VLENVQPNSAASKAGLQAGDRIVKVDGQPL 35
>pdb|3O5N|A Chain A, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|B Chain B, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|C Chain C, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|D Chain D, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|E Chain E, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|F Chain F, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|G Chain G, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
pdb|3O5N|H Chain H, Tetrahydroquinoline Carboxylates Are Potent Inhibitors Of
The Shank Pdz Domain, A Putative Target In Autism
Disorders
Length = 112
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 116 YVHSVQSGSLGYSAGLRTGDRILE 139
Y+ SV + + AGLRTGD ++E
Sbjct: 51 YLESVDVEGVAWRAGLRTGDFLIE 74
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 93 LMIETRKCSN-LGISL------VGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTD 144
L I+ +K + LG S+ +GG+A IYV ++ G L+ GDR++E NG D
Sbjct: 7 LNIQLKKGTEGLGFSITSRDVTIGGSAP-IYVKNILPRGAAIQDGRLKAGDRLIEVNGVD 65
Query: 145 L 145
L
Sbjct: 66 L 66
>pdb|3QIK|A Chain A, Crystal Structure Of The First Pdz Domain Of Prex1
Length = 101
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYN 141
+ V SVQ GSL AGL+ G +I N
Sbjct: 40 AVVVKSVQRGSLAEVAGLQVGRKIYSIN 67
>pdb|3KHF|A Chain A, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
pdb|3KHF|B Chain B, The Crystal Structure Of The Pdz Domain Of Human
Microtubule Associated SerineTHREONINE KINASE 3 (MAST3)
Length = 99
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 117 VHSVQSGSLGYSAGLRTGDRILEYNG 142
V SV+ GS AGLR GD I NG
Sbjct: 38 VWSVEDGSPAQEAGLRAGDLITHING 63
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate
Receptor Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate
Receptor Interacting Protein-1 (Grip1)
Length = 97
Score = 27.3 bits (59), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 5 TYQLAASVLRQCGNSITMLVQY 26
T+ A S+L+QCG +L++Y
Sbjct: 69 THAEAMSILKQCGQEAALLIEY 90
>pdb|3R69|A Chain A, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
pdb|3R69|B Chain B, Molecular Analysis Of The Interaction Of The Hdl-Receptor
Sr-Bi With The Pdz3 Domain Of Its Adaptor Protein Pdzk1
Length = 89
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 88 GEPRFLMIETRKCSN-LGISL-VGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
G PR ++I +K SN G L G G + ++ GS +AGL+ D ++ NG +
Sbjct: 1 GSPRVVVI--KKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSV 58
Query: 146 RXXXXXXXXXXXXKPADKVTVL 167
K D+ T+L
Sbjct: 59 EALDHDGVVEMIRKGGDQTTLL 80
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 93 LMIETRKCSN-LGISL------VGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTD 144
L I+ +K + LG S+ +GG+A IYV ++ G L+ GDR++E NG D
Sbjct: 32 LNIQLKKGTEGLGFSITSRDVTIGGSAP-IYVKNILPRGAAIQDGRLKAGDRLIEVNGVD 90
Query: 145 L 145
L
Sbjct: 91 L 91
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 97 TRKCSNLGISLVG--GNA----VGIYVHSV-QSGSLGYSAGLRTGDRILEYNGTDLR 146
T+ LGI++ G G+ GI+V S+ +S ++ + ++ GD+I+ +GT+L+
Sbjct: 11 TKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQ 67
>pdb|3R68|A Chain A, Molecular Analysis Of The Pdz3 Domain Of Pdzk1
Length = 95
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 4/82 (4%)
Query: 89 EPRFLMIETRKCSN-LGISL-VGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLR 146
+PR ++I +K SN G L G G + ++ GS +AGL+ D ++ NG +
Sbjct: 5 QPRVVVI--KKGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVE 62
Query: 147 XXXXXXXXXXXXKPADKVTVLA 168
K D+ T+L
Sbjct: 63 ALDHDGVVEMIRKGGDQTTLLV 84
>pdb|2VWR|A Chain A, Crystal Structure Of The Second Pdz Domain Of Numb-Binding
Protein 2
Length = 95
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 101 SNLGISLVG-GNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR 146
LGI LV + G+++ + G L G L + DR+L NG DL+
Sbjct: 16 EQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLK 63
>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|B Chain B, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|C Chain C, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|D Chain D, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|E Chain E, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|F Chain F, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|G Chain G, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|H Chain H, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|I Chain I, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|J Chain J, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|K Chain K, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|L Chain L, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
Length = 345
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 21/53 (39%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRXXXXXXXXXXXXKPADKVTV 166
G +V V GS AG++ GD I NG L +P KV +
Sbjct: 264 GAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKL 316
>pdb|2P3W|A Chain A, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
pdb|2P3W|B Chain B, Crystal Structure Of The Htra3 Pdz Domain Bound To A
Phage-Derived Ligand (Fgrwv)
Length = 112
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 94 MIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
+++ K SN V + GIYV V S G++ GD I++ NG L
Sbjct: 19 LVDELKASNPDFPEV---SSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPL 67
>pdb|2W7R|A Chain A, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
pdb|2W7R|B Chain B, Structure Of The Pdz Domain Of Human Microtubule
Associated Serine-Threonine Kinase 4
Length = 98
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 117 VHSVQSGSLGYSAGLRTGDRILEYNGTDLRXXXXXXXXXXXXKPADKVTV 166
V +V+ GS AGL+ GD I NG + K +KV++
Sbjct: 37 VWNVEEGSPACQAGLKAGDLITHINGEPVHGLVHTEVIELLLKSGNKVSI 86
>pdb|2R4H|B Chain B, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|A Chain A, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
pdb|2R4H|C Chain C, Crystal Structure Of A C1190s Mutant Of The 6th Pdz Domain
Of Human Membrane Associated Guanylate Kinase
Length = 112
Score = 26.2 bits (56), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 98 RKCSNLGISLVGGNA--VGIYVHSV-QSGSLGYSAGLRTGDRILEYNG 142
R G SL GG + +YV + + G S +R GD ILE NG
Sbjct: 32 RGAKGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEING 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.130 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,333,682
Number of Sequences: 62578
Number of extensions: 148796
Number of successful extensions: 313
Number of sequences better than 100.0: 122
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 131
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)