Query psy7774
Match_columns 173
No_of_seqs 217 out of 1718
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 18:33:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7774.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7774hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3209|consensus 99.8 1.1E-17 2.4E-22 142.2 17.1 169 1-172 536-736 (984)
2 KOG3209|consensus 99.8 2.1E-17 4.6E-22 140.4 15.1 167 2-171 812-982 (984)
3 KOG3550|consensus 99.7 2.2E-17 4.8E-22 116.9 7.8 83 89-172 90-175 (207)
4 PF00595 PDZ: PDZ domain (Also 99.7 2.6E-16 5.7E-21 102.5 9.5 78 92-169 1-81 (81)
5 KOG3551|consensus 99.5 1.1E-13 2.5E-18 111.1 8.5 83 89-171 84-169 (506)
6 cd00992 PDZ_signaling PDZ doma 99.4 4.2E-12 9.1E-17 82.3 10.9 78 91-168 2-81 (82)
7 KOG3549|consensus 99.4 5.2E-13 1.1E-17 106.2 7.8 84 88-171 53-139 (505)
8 smart00228 PDZ Domain present 99.4 9.7E-12 2.1E-16 80.8 11.7 80 91-171 3-84 (85)
9 KOG3580|consensus 99.4 1.6E-11 3.4E-16 103.8 13.5 79 91-171 409-489 (1027)
10 cd00136 PDZ PDZ domain, also c 99.3 1.3E-11 2.8E-16 77.8 9.1 67 102-168 2-69 (70)
11 PF13180 PDZ_2: PDZ domain; PD 99.2 4E-11 8.6E-16 78.2 7.7 69 102-172 2-73 (82)
12 KOG3553|consensus 99.2 2.7E-11 5.9E-16 80.1 4.3 58 102-159 36-105 (124)
13 KOG3580|consensus 99.1 1E-09 2.2E-14 93.0 13.3 80 89-172 198-279 (1027)
14 cd00988 PDZ_CTP_protease PDZ d 99.1 9.7E-10 2.1E-14 71.7 9.6 70 101-171 2-72 (85)
15 KOG1892|consensus 99.0 2.7E-09 5.7E-14 94.3 9.0 81 88-170 932-1018(1629)
16 KOG3606|consensus 98.9 3.6E-09 7.8E-14 81.9 7.1 82 88-169 157-251 (358)
17 cd00991 PDZ_archaeal_metallopr 98.9 1.3E-08 2.8E-13 65.8 7.4 59 112-172 9-69 (79)
18 KOG3571|consensus 98.9 1.1E-08 2.5E-13 85.1 8.5 82 89-170 249-338 (626)
19 cd00990 PDZ_glycyl_aminopeptid 98.8 3.6E-08 7.9E-13 63.5 8.3 66 103-172 3-68 (80)
20 KOG3651|consensus 98.8 2.4E-08 5.1E-13 78.6 8.4 79 90-168 5-86 (429)
21 KOG3542|consensus 98.8 1.5E-08 3.2E-13 87.2 6.4 81 89-170 535-618 (1283)
22 PLN00049 carboxyl-terminal pro 98.7 8.7E-08 1.9E-12 79.6 10.1 73 99-171 83-161 (389)
23 COG0793 Prc Periplasmic protea 98.7 6.3E-08 1.4E-12 80.7 9.2 73 99-171 98-171 (406)
24 cd00987 PDZ_serine_protease PD 98.7 7.8E-08 1.7E-12 63.1 7.3 58 113-172 24-83 (90)
25 cd00989 PDZ_metalloprotease PD 98.7 2.2E-07 4.9E-12 59.5 9.0 67 103-172 3-70 (79)
26 cd00986 PDZ_LON_protease PDZ d 98.7 1.7E-07 3.8E-12 60.3 7.7 57 113-172 8-66 (79)
27 TIGR00225 prc C-terminal pepti 98.6 1.9E-07 4.2E-12 76.0 9.3 71 101-172 51-122 (334)
28 KOG3552|consensus 98.6 7.3E-08 1.6E-12 85.2 6.2 78 89-171 55-132 (1298)
29 TIGR02037 degP_htrA_DO peripla 98.6 1.4E-06 3.1E-11 73.2 12.9 58 113-172 362-421 (428)
30 TIGR02037 degP_htrA_DO peripla 98.5 4.9E-07 1.1E-11 76.0 8.6 60 113-172 257-316 (428)
31 KOG0609|consensus 98.5 5.9E-07 1.3E-11 75.6 8.4 82 89-170 122-204 (542)
32 PRK11186 carboxy-terminal prot 98.5 7.7E-07 1.7E-11 78.2 8.4 71 100-171 243-320 (667)
33 TIGR01713 typeII_sec_gspC gene 98.4 1.1E-06 2.4E-11 69.2 8.0 71 102-172 178-250 (259)
34 PRK10139 serine endoprotease; 98.3 2E-06 4.3E-11 72.9 7.5 58 113-172 290-349 (455)
35 PRK10898 serine endoprotease; 98.3 2.6E-06 5.6E-11 70.0 7.5 60 113-172 279-338 (353)
36 PRK10942 serine endoprotease; 98.3 2.9E-06 6.2E-11 72.3 7.6 60 113-172 311-370 (473)
37 TIGR02038 protease_degS peripl 98.3 2.5E-06 5.5E-11 70.0 6.8 58 113-172 278-337 (351)
38 PRK10779 zinc metallopeptidase 98.3 1.7E-06 3.7E-11 73.2 5.9 59 114-172 127-185 (449)
39 KOG3605|consensus 98.2 1.9E-06 4.1E-11 74.0 5.7 82 89-170 645-733 (829)
40 PRK10139 serine endoprotease; 98.2 6.8E-06 1.5E-10 69.7 8.0 58 113-172 390-447 (455)
41 PRK10942 serine endoprotease; 98.1 1.1E-05 2.4E-10 68.8 8.0 58 113-172 408-465 (473)
42 KOG3605|consensus 98.1 2.6E-06 5.7E-11 73.2 4.2 70 91-165 738-808 (829)
43 KOG3938|consensus 98.1 6.6E-06 1.4E-10 63.9 5.6 81 88-169 125-208 (334)
44 TIGR00054 RIP metalloprotease 98.1 1.1E-05 2.4E-10 67.8 7.1 58 113-172 203-261 (420)
45 PRK10779 zinc metallopeptidase 98.0 1.3E-05 2.7E-10 68.0 6.9 57 114-172 222-279 (449)
46 KOG4371|consensus 98.0 2.7E-05 5.8E-10 70.1 7.8 124 4-171 1204-1329(1332)
47 TIGR00054 RIP metalloprotease 97.7 5.3E-05 1.1E-09 63.7 5.5 57 113-171 128-184 (420)
48 KOG0606|consensus 97.7 0.00011 2.5E-09 66.8 7.8 78 92-170 629-715 (1205)
49 PF14685 Tricorn_PDZ: Tricorn 97.7 0.00054 1.2E-08 45.1 8.9 59 113-172 12-80 (88)
50 TIGR02860 spore_IV_B stage IV 97.7 0.00028 6E-09 58.6 8.6 68 100-172 95-171 (402)
51 KOG3129|consensus 97.6 0.00022 4.8E-09 53.7 6.6 59 114-172 140-200 (231)
52 PF04495 GRASP55_65: GRASP55/6 97.6 0.00064 1.4E-08 48.6 8.4 80 89-170 10-100 (138)
53 COG0265 DegQ Trypsin-like seri 97.5 0.00037 8.1E-09 57.0 7.0 59 113-171 270-328 (347)
54 PRK09681 putative type II secr 97.2 0.0011 2.4E-08 52.5 6.2 46 127-172 221-266 (276)
55 TIGR03279 cyano_FeS_chp putati 97.1 0.0003 6.5E-09 58.9 2.4 54 117-170 2-63 (433)
56 KOG3549|consensus 97.0 0.0011 2.4E-08 53.7 5.0 31 1-31 113-145 (505)
57 COG3975 Predicted protease wit 97.0 0.0011 2.5E-08 56.3 4.8 42 101-143 451-492 (558)
58 KOG3532|consensus 96.9 0.0029 6.2E-08 55.4 6.9 74 95-170 380-453 (1051)
59 COG3480 SdrC Predicted secrete 96.9 0.0031 6.8E-08 50.5 6.6 57 113-172 130-188 (342)
60 KOG3551|consensus 96.8 0.0033 7.2E-08 51.6 6.1 32 1-32 143-176 (506)
61 KOG1320|consensus 96.8 0.0049 1.1E-07 52.2 7.0 58 114-171 399-456 (473)
62 COG3031 PulC Type II secretory 96.6 0.015 3.2E-07 45.0 7.7 70 90-172 195-266 (275)
63 KOG1738|consensus 96.4 0.0061 1.3E-07 52.8 5.3 70 99-168 211-281 (638)
64 KOG1421|consensus 95.7 0.029 6.4E-07 49.4 6.1 56 114-172 304-360 (955)
65 KOG4407|consensus 94.2 0.05 1.1E-06 51.1 3.6 61 89-149 45-132 (1973)
66 KOG4371|consensus 92.9 0.2 4.3E-06 46.3 5.0 78 93-172 1151-1228(1332)
67 COG0750 Predicted membrane-ass 90.8 0.81 1.7E-05 37.6 6.2 54 116-170 132-188 (375)
68 KOG3834|consensus 90.3 0.52 1.1E-05 39.6 4.6 58 111-169 13-71 (462)
69 PF12812 PDZ_1: PDZ-like domai 89.8 0.74 1.6E-05 29.5 4.1 36 115-150 32-67 (78)
70 PF11874 DUF3394: Domain of un 88.7 7 0.00015 29.2 9.1 38 103-141 113-150 (183)
71 KOG3834|consensus 87.5 7.4 0.00016 32.9 9.4 77 89-168 77-164 (462)
72 KOG3550|consensus 87.1 0.68 1.5E-05 33.5 2.8 34 3-36 150-183 (207)
73 KOG4407|consensus 86.1 0.33 7.2E-06 46.0 1.0 55 114-168 144-198 (1973)
74 KOG0708|consensus 84.9 1.1 2.3E-05 37.0 3.3 32 1-32 8-39 (359)
75 KOG0792|consensus 81.9 3.5 7.6E-05 38.5 5.6 61 100-160 715-797 (1144)
76 KOG2921|consensus 77.1 2.8 6.2E-05 35.0 3.2 36 113-148 220-256 (484)
77 KOG1421|consensus 70.8 13 0.00028 33.6 5.9 44 112-158 861-904 (955)
78 KOG1703|consensus 60.8 3.7 8.1E-05 35.3 0.8 70 102-171 9-79 (479)
79 PRK14755 transcriptional regul 60.4 9.4 0.0002 18.3 1.8 17 2-18 5-21 (26)
80 PF08383 Maf_N: Maf N-terminal 59.1 8.5 0.00018 20.6 1.6 13 3-15 22-34 (35)
81 cd01433 Ribosomal_L16_L10e Rib 42.9 22 0.00048 24.2 2.2 34 129-166 74-107 (112)
82 PRK09203 rplP 50S ribosomal pr 39.5 27 0.00058 24.9 2.2 36 123-163 88-124 (138)
83 KOG1892|consensus 36.4 24 0.00052 33.3 1.9 32 1-32 993-1024(1629)
84 PHA02823 chemokine binding pro 36.1 39 0.00085 25.9 2.7 27 3-29 142-168 (255)
85 TIGR01164 rplP_bact ribosomal 31.3 33 0.00071 24.0 1.6 35 123-162 87-122 (126)
86 COG0461 PyrE Orotate phosphori 30.8 82 0.0018 24.0 3.8 37 129-165 107-143 (201)
87 PRK13810 orotate phosphoribosy 30.4 1.1E+02 0.0025 22.8 4.5 36 130-165 118-153 (187)
88 KOG3552|consensus 29.6 38 0.00083 31.8 2.0 25 2-26 107-131 (1298)
89 PF07497 Rho_RNA_bind: Rho ter 27.7 1.5E+02 0.0032 19.0 4.0 34 101-138 12-50 (78)
90 TIGR01744 XPRTase xanthine pho 27.2 89 0.0019 23.4 3.4 34 131-164 114-147 (191)
91 PF03793 PASTA: PASTA domain; 25.9 69 0.0015 18.7 2.2 22 1-22 6-27 (63)
92 CHL00044 rpl16 ribosomal prote 25.3 40 0.00088 23.9 1.2 37 123-164 88-125 (135)
93 COG5233 GRH1 Peripheral Golgi 25.3 42 0.00091 27.5 1.4 30 116-145 66-95 (417)
94 PRK09219 xanthine phosphoribos 25.2 93 0.002 23.3 3.2 35 130-164 113-147 (189)
95 COG1625 Fe-S oxidoreductase, r 25.2 64 0.0014 27.3 2.5 33 116-148 4-37 (414)
96 PRK15464 cold shock-like prote 25.0 1.8E+02 0.0038 18.0 4.6 43 93-139 9-53 (70)
97 KOG3571|consensus 23.8 73 0.0016 27.9 2.6 26 1-26 310-338 (626)
98 cd01674 Homoaconitase_Swivel H 23.1 1.8E+02 0.0038 20.6 4.0 36 129-166 41-77 (129)
99 COG0197 RplP Ribosomal protein 22.6 46 0.001 24.0 1.1 36 123-163 91-127 (146)
100 PRK04199 rpl10e 50S ribosomal 21.5 1.3E+02 0.0028 22.4 3.2 35 123-160 117-152 (172)
101 PRK09937 stationary phase/star 20.7 2.3E+02 0.005 17.7 5.4 43 93-139 6-50 (74)
No 1
>KOG3209|consensus
Probab=99.78 E-value=1.1e-17 Score=142.16 Aligned_cols=169 Identities=17% Similarity=0.304 Sum_probs=111.0
Q ss_pred CCcccHHHHHHHHhhC--CCeEEEEEEeCCCccC-----CCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCC
Q psy7774 1 MRSATYQLAASVLRQC--GNSITMLVQYSPDKYH-----ELEGSGSSSAENESVSGRGSGSPTPCNSPGTNRKSSIQHNT 73 (173)
Q Consensus 1 l~~~th~~av~~L~~~--g~~v~L~V~r~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 73 (173)
+++++|.|||+||++| |.++.|+|+|...... ..+.+....+.....+.....+..|.. ++ .+....+...
T Consensus 536 vr~L~h~qvvdmlke~piG~r~~Llv~RGgp~s~~ktpk~~~r~~~~~s~~~s~sap~i~q~~Pfp-p~-~rs~~pd~t~ 613 (984)
T KOG3209|consen 536 VRALTHTQVVDMLKECPIGSRVHLLVKRGGPPSPSKTPKAADRKENQGSNQMSSSAPLIPQKLPFP-PT-SRSEEPDNTR 613 (984)
T ss_pred ccccchHHHHHHHHhccCCcceeEEEecCCCCCCCcCcchhhhccCCCCccccccccccCCCCCCC-Cc-ccccCCcccc
Confidence 4789999999999996 8999999998655321 011111111111111111111222211 11 1111111111
Q ss_pred Ccccc--------------------CCCCCCCCCCCCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccc-cC
Q psy7774 74 STLTR--------------------THVCKDERSGEPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYS-AG 130 (173)
Q Consensus 74 ~~~~~--------------------~~~~~~~~~~~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~-~g 130 (173)
.+++. .+..+.+......+|.|+|.. .||||+|.||. +.+|||..|.+.|+|+. ++
T Consensus 614 ~~~qrkpdp~~~we~Sraiyesr~~Ps~tsn~~pdk~ldV~L~rke-sGFGFRiLGG~ep~qpi~iG~Iv~lGaAe~DGR 692 (984)
T KOG3209|consen 614 NTLQRKPDPTEEWEKSRAIYESRMRPSSTSNQKPDKELDVFLRRKE-SGFGFRILGGDEPGQPIYIGAIVPLGAAEEDGR 692 (984)
T ss_pred cccccCCChHHHhhhcccchhccCCCCCccccCCccceeEEEEeec-cccceEEecCCCCCCeeEEeeeeecccccccCc
Confidence 11111 111223333466789999987 89999999998 56899999999999999 55
Q ss_pred CCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeEEEEEEECC
Q psy7774 131 LRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTVLAHSDT 172 (173)
Q Consensus 131 L~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v~l~v~r~~ 172 (173)
|+.||.|+.|+|.++++++|.+++.+|. ...+.|.|+|+|..
T Consensus 693 L~~gDElv~iDG~pV~GksH~~vv~Lm~~AArnghV~LtVRRkv 736 (984)
T KOG3209|consen 693 LREGDELVCIDGIPVEGKSHSEVVDLMEAAARNGHVNLTVRRKV 736 (984)
T ss_pred ccCCCeEEEecCeeccCccHHHHHHHHHHHHhcCceEEEEeeee
Confidence 9999999999999999999999999995 45789999999864
No 2
>KOG3209|consensus
Probab=99.76 E-value=2.1e-17 Score=140.44 Aligned_cols=167 Identities=15% Similarity=0.195 Sum_probs=108.5
Q ss_pred CcccHHHHHHHHhhCCCeEEEEEEeCCCccCCCcCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCcCCCCCccccCC
Q psy7774 2 RSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGS-PTPCNSPGTNRKSSIQHNTSTLTRTH 80 (173)
Q Consensus 2 ~~~th~~av~~L~~~g~~v~L~V~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~ 80 (173)
.|++|.+.|++||.+|..|+|+|....+...++....+.-.++..+.+..... -.|. +.+.-+...++.....-...
T Consensus 812 ~~lsHadiv~LIKdaGlsVtLtIip~ee~~~~~~~~sa~~~s~~t~~~~~~q~~glp~--~~~s~~~~~pqpdt~~~~~~ 889 (984)
T KOG3209|consen 812 LNLSHADIVSLIKDAGLSVTLTIIPPEEAGPPTSMTSAEKQSPFTQNGPYEQQYGLPG--PRPSVYEEHPQPDTFQGLSI 889 (984)
T ss_pred eccCchhHHHHHHhcCceEEEEEcChhccCCCCCCcchhhcCcccccCCHhHccCCCC--CCccccccCCCCccccceec
Confidence 57899999999999999999999755443222211111111111110100000 0000 00000111111100000000
Q ss_pred CCCCCCCCCCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHH
Q psy7774 81 VCKDERSGEPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYEL 157 (173)
Q Consensus 81 ~~~~~~~~~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l 157 (173)
...........+|+|.|+. .||||+|+||. ..++||-++..+|||.+ +++++||+|++|||++.++++|..|+.++
T Consensus 890 ~~r~~qn~~~~~VelErG~-kGFGFSiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelI 968 (984)
T KOG3209|consen 890 NDRMSQNGDLYTVELERGA-KGFGFSIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELI 968 (984)
T ss_pred cccccccCCeeEEEeeccc-cccceEeecccccccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHH
Confidence 1111223467889999988 99999999998 56899999999999999 55999999999999999999999999999
Q ss_pred hCCCCeEEEEEEEC
Q psy7774 158 AKPADKVTVLAHSD 171 (173)
Q Consensus 158 ~~~g~~v~l~v~r~ 171 (173)
++-|..|.+.++|.
T Consensus 969 k~gg~~vll~Lr~g 982 (984)
T KOG3209|consen 969 KQGGRRVLLLLRRG 982 (984)
T ss_pred HhCCeEEEEEeccC
Confidence 99988888887764
No 3
>KOG3550|consensus
Probab=99.72 E-value=2.2e-17 Score=116.87 Aligned_cols=83 Identities=24% Similarity=0.490 Sum_probs=78.2
Q ss_pred CCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774 89 EPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT 165 (173)
Q Consensus 89 ~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~ 165 (173)
-||.|.|.|.+ +||||.+.||+ .++|||++|.|||.|++ +||+.||++++|||+++++-.|+.++.+|+.+-+.|.
T Consensus 90 hprvvelpktd-eglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvk 168 (207)
T KOG3550|consen 90 HPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVK 168 (207)
T ss_pred CCceeecCccc-cccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEE
Confidence 58999999988 99999999998 67999999999999999 7799999999999999999999999999999999999
Q ss_pred EEEEECC
Q psy7774 166 VLAHSDT 172 (173)
Q Consensus 166 l~v~r~~ 172 (173)
|.|+|.+
T Consensus 169 lvvrytp 175 (207)
T KOG3550|consen 169 LVVRYTP 175 (207)
T ss_pred EEEecCh
Confidence 9998854
No 4
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.69 E-value=2.6e-16 Score=102.49 Aligned_cols=78 Identities=36% Similarity=0.566 Sum_probs=71.4
Q ss_pred EEEEEccCCCcccEEEEccCC---CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEE
Q psy7774 92 FLMIETRKCSNLGISLVGGNA---VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLA 168 (173)
Q Consensus 92 ~v~l~~~~~~~lG~~l~gg~~---~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v 168 (173)
+|++.|....+|||.+.++.. .++||..|.++++|+++||+.||+|++|||.++.++++.+++.+++.+++.++|+|
T Consensus 1 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~V 80 (81)
T PF00595_consen 1 QVTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLTV 80 (81)
T ss_dssp EEEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEEE
T ss_pred CEEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEEE
Confidence 367888666999999998875 49999999999999998899999999999999999999999999999888999988
Q ss_pred E
Q psy7774 169 H 169 (173)
Q Consensus 169 ~ 169 (173)
+
T Consensus 81 ~ 81 (81)
T PF00595_consen 81 Q 81 (81)
T ss_dssp E
T ss_pred C
Confidence 5
No 5
>KOG3551|consensus
Probab=99.49 E-value=1.1e-13 Score=111.10 Aligned_cols=83 Identities=31% Similarity=0.444 Sum_probs=77.3
Q ss_pred CCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774 89 EPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT 165 (173)
Q Consensus 89 ~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~ 165 (173)
..|.|.+.|.+.+|||++|.||. ..+|.|++|++|-+|++.+ |..||.|++|||.++.+.+|++++..||+.|..|.
T Consensus 84 ~~R~V~V~K~d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~ 163 (506)
T KOG3551|consen 84 AERRVRVVKQDAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVL 163 (506)
T ss_pred ccceeEEEEecCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceee
Confidence 45889999988899999999997 5699999999999999965 99999999999999999999999999999999999
Q ss_pred EEEEEC
Q psy7774 166 VLAHSD 171 (173)
Q Consensus 166 l~v~r~ 171 (173)
+.|++.
T Consensus 164 levKy~ 169 (506)
T KOG3551|consen 164 LEVKYM 169 (506)
T ss_pred eeeeee
Confidence 999875
No 6
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=99.42 E-value=4.2e-12 Score=82.29 Aligned_cols=78 Identities=40% Similarity=0.581 Sum_probs=68.1
Q ss_pred EEEEEEccCCCcccEEEEccCC--CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEE
Q psy7774 91 RFLMIETRKCSNLGISLVGGNA--VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLA 168 (173)
Q Consensus 91 ~~v~l~~~~~~~lG~~l~gg~~--~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v 168 (173)
+.+.+.+....+|||.+.++.. .+++|..|.++++|+.++|+.||+|++|||..+..+++.++...++.....+.|++
T Consensus 2 ~~~~l~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~v 81 (82)
T cd00992 2 RTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTV 81 (82)
T ss_pred EEEEEEeCCCCCcCEEEeCcccCCCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEEE
Confidence 4577777656899999987653 68999999999999999999999999999999999999999999987766777765
No 7
>KOG3549|consensus
Probab=99.42 E-value=5.2e-13 Score=106.22 Aligned_cols=84 Identities=27% Similarity=0.401 Sum_probs=78.0
Q ss_pred CCCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeE
Q psy7774 88 GEPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKV 164 (173)
Q Consensus 88 ~~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v 164 (173)
...|+|+|++.+-+|||++|.||. ..+|+|++|.++-+|+..| |-.||-|++|||..+..++|++++.+|+++|+.|
T Consensus 53 s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGdeV 132 (505)
T KOG3549|consen 53 SKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDEV 132 (505)
T ss_pred CCceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCEE
Confidence 467999999988899999999997 5699999999999999966 9999999999999999999999999999999999
Q ss_pred EEEEEEC
Q psy7774 165 TVLAHSD 171 (173)
Q Consensus 165 ~l~v~r~ 171 (173)
+|+|++.
T Consensus 133 tlTV~~l 139 (505)
T KOG3549|consen 133 TLTVKHL 139 (505)
T ss_pred EEEeHhh
Confidence 9998753
No 8
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=99.40 E-value=9.7e-12 Score=80.84 Aligned_cols=80 Identities=43% Similarity=0.541 Sum_probs=70.6
Q ss_pred EEEEEEccCCCcccEEEEccCC--CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEE
Q psy7774 91 RFLMIETRKCSNLGISLVGGNA--VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLA 168 (173)
Q Consensus 91 ~~v~l~~~~~~~lG~~l~gg~~--~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v 168 (173)
..+.+.+.. ..|||.+..+.. .+++|..|.++++|+++||++||+|++|||..+.++++.+....++..+..+.|++
T Consensus 3 ~~~~~~~~~-~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i 81 (85)
T smart00228 3 RLVELEKGG-GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTV 81 (85)
T ss_pred EEEEEEECC-CcccEEEECCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEE
Confidence 456777776 899999987653 68999999999999999999999999999999999999999888887777999999
Q ss_pred EEC
Q psy7774 169 HSD 171 (173)
Q Consensus 169 ~r~ 171 (173)
.|+
T Consensus 82 ~r~ 84 (85)
T smart00228 82 LRG 84 (85)
T ss_pred EeC
Confidence 886
No 9
>KOG3580|consensus
Probab=99.36 E-value=1.6e-11 Score=103.76 Aligned_cols=79 Identities=39% Similarity=0.620 Sum_probs=69.7
Q ss_pred EEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeEEEEE
Q psy7774 91 RFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTVLA 168 (173)
Q Consensus 91 ~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v~l~v 168 (173)
+.|...| +..+|+.+.||++.||||..|..|++|+..||+.||+|+.||.+++.++..++|+..|. ..|..|+|..
T Consensus 409 k~VrF~K--GdSvGLRLAGGNDVGIFVaGvqegspA~~eGlqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtila 486 (1027)
T KOG3580|consen 409 KMVRFKK--GDSVGLRLAGGNDVGIFVAGVQEGSPAEQEGLQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTILA 486 (1027)
T ss_pred eeEEeec--CCeeeeEeccCCceeEEEeecccCCchhhccccccceeEEeccccchhhhHHHHHHHHhcCCCCcEEeehh
Confidence 3444444 46999999999999999999999999999999999999999999999999999998885 5788999887
Q ss_pred EEC
Q psy7774 169 HSD 171 (173)
Q Consensus 169 ~r~ 171 (173)
++.
T Consensus 487 Q~k 489 (1027)
T KOG3580|consen 487 QSK 489 (1027)
T ss_pred hhh
Confidence 654
No 10
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=99.34 E-value=1.3e-11 Score=77.76 Aligned_cols=67 Identities=45% Similarity=0.606 Sum_probs=60.2
Q ss_pred cccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhC-CCCeEEEEE
Q psy7774 102 NLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK-PADKVTVLA 168 (173)
Q Consensus 102 ~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~-~g~~v~l~v 168 (173)
+|||.+.+....+++|..|.++++|+.+||+.||+|++|||.++.++++.++...++. .+..+.|++
T Consensus 2 ~~G~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGTEGGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 6899998766668999999999999999999999999999999999999999999875 458888876
No 11
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=99.25 E-value=4e-11 Score=78.16 Aligned_cols=69 Identities=36% Similarity=0.502 Sum_probs=55.7
Q ss_pred cccEEEEccC-CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHH--hCCCCeEEEEEEECC
Q psy7774 102 NLGISLVGGN-AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYEL--AKPADKVTVLAHSDT 172 (173)
Q Consensus 102 ~lG~~l~gg~-~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l--~~~g~~v~l~v~r~~ 172 (173)
.||+.+.... ..+++|..|.+++||+++||+.||+|++|||..+.+. .+....+ ...++++.|++.|+.
T Consensus 2 ~lGv~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~~~~g~~v~l~v~R~g 73 (82)
T PF13180_consen 2 GLGVTVQNLSDTGGVVVVSVIPGSPAAKAGLQPGDIILAINGKPVNSS--EDLVNILSKGKPGDTVTLTVLRDG 73 (82)
T ss_dssp E-SEEEEECSCSSSEEEEEESTTSHHHHTTS-TTEEEEEETTEESSSH--HHHHHHHHCSSTTSEEEEEEEETT
T ss_pred EECeEEEEccCCCeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEcCCH--HHHHHHHHhCCCCCEEEEEEEECC
Confidence 5788887655 3689999999999999999999999999999999655 4444444 478999999999974
No 12
>KOG3553|consensus
Probab=99.18 E-value=2.7e-11 Score=80.13 Aligned_cols=58 Identities=41% Similarity=0.589 Sum_probs=53.0
Q ss_pred cccEEEEccC------------CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhC
Q psy7774 102 NLGISLVGGN------------AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK 159 (173)
Q Consensus 102 ~lG~~l~gg~------------~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~ 159 (173)
.+||.|-||- +.||||.+|..||||+.+||+.+|.|++|||.++.-++|++|+..+++
T Consensus 36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k 105 (124)
T KOG3553|consen 36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITK 105 (124)
T ss_pred EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhhH
Confidence 4689998874 469999999999999999999999999999999999999999988865
No 13
>KOG3580|consensus
Probab=99.15 E-value=1e-09 Score=93.00 Aligned_cols=80 Identities=24% Similarity=0.360 Sum_probs=69.3
Q ss_pred CCEEEEEEc-cCCCcccEEEEccCCCCEEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEE
Q psy7774 89 EPRFLMIET-RKCSNLGISLVGGNAVGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166 (173)
Q Consensus 89 ~~~~v~l~~-~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l 166 (173)
.|..+.|.| ..++.||+.+. ..|||..|...+.|++ .+|+.||.|++|||+..++++..++-.++.+..+++.|
T Consensus 198 ~p~kv~LvKsR~nEEyGlrLg----SqIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL~l 273 (1027)
T KOG3580|consen 198 GPIKVLLVKSRANEEYGLRLG----SQIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKLQL 273 (1027)
T ss_pred CcceEEEEeeccchhhccccc----chhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccCceEE
Confidence 445666665 34678898774 4699999999999999 56999999999999999999999999999999999999
Q ss_pred EEEECC
Q psy7774 167 LAHSDT 172 (173)
Q Consensus 167 ~v~r~~ 172 (173)
.|+|++
T Consensus 274 vVlRD~ 279 (1027)
T KOG3580|consen 274 VVLRDS 279 (1027)
T ss_pred EEEecC
Confidence 999986
No 14
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.12 E-value=9.7e-10 Score=71.72 Aligned_cols=70 Identities=24% Similarity=0.380 Sum_probs=60.3
Q ss_pred CcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhC-CCCeEEEEEEEC
Q psy7774 101 SNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK-PADKVTVLAHSD 171 (173)
Q Consensus 101 ~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~-~g~~v~l~v~r~ 171 (173)
.+||+.+.- ...+++|..|.++++|+++||++||+|++|||..+.++++.+....++. .+..+.|++.|+
T Consensus 2 ~~lG~~~~~-~~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 2 GGIGLELKY-DDGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred eEEEEEEEE-cCCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 478888864 3467999999999999999999999999999999999988888877764 578899999886
No 15
>KOG1892|consensus
Probab=98.97 E-value=2.7e-09 Score=94.31 Aligned_cols=81 Identities=26% Similarity=0.426 Sum_probs=70.6
Q ss_pred CCCEEEEEEccCCCcccEEEEccC-----CCCEEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHHhCCC
Q psy7774 88 GEPRFLMIETRKCSNLGISLVGGN-----AVGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAKPA 161 (173)
Q Consensus 88 ~~~~~v~l~~~~~~~lG~~l~gg~-----~~~i~V~~v~~gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g 161 (173)
.+..+|+|.|. +|+|++|+..+ ..||||+.|++|++|+. ++|..||+++.|||.++-+++.+.|..++.+.|
T Consensus 932 pei~~vtL~Kn--nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg 1009 (1629)
T KOG1892|consen 932 PEIITVTLKKN--NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTG 1009 (1629)
T ss_pred CceEEEEEecc--CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccC
Confidence 35667888775 68999986432 56999999999999998 559999999999999999999999999999999
Q ss_pred CeEEEEEEE
Q psy7774 162 DKVTVLAHS 170 (173)
Q Consensus 162 ~~v~l~v~r 170 (173)
..|.|.|..
T Consensus 1010 ~vV~leVaK 1018 (1629)
T KOG1892|consen 1010 NVVHLEVAK 1018 (1629)
T ss_pred CeEEEehhh
Confidence 999998854
No 16
>KOG3606|consensus
Probab=98.92 E-value=3.6e-09 Score=81.95 Aligned_cols=82 Identities=21% Similarity=0.381 Sum_probs=70.7
Q ss_pred CCCEEEEEEccC-CCcccEEEEccC-----------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHH
Q psy7774 88 GEPRFLMIETRK-CSNLGISLVGGN-----------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAA 154 (173)
Q Consensus 88 ~~~~~v~l~~~~-~~~lG~~l~gg~-----------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~ 154 (173)
...|.|.|.|.+ ..+|||.|+.|. -+||||+++.|||.|+..| |.+.|.+++|||..+.+++.+++.
T Consensus 157 EtHRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVT 236 (358)
T KOG3606|consen 157 ETHRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVT 236 (358)
T ss_pred hhhhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHH
Confidence 345778888855 679999998875 3599999999999999977 889999999999999999999999
Q ss_pred HHHhCCCCeEEEEEE
Q psy7774 155 YELAKPADKVTVLAH 169 (173)
Q Consensus 155 ~~l~~~g~~v~l~v~ 169 (173)
.++-.....+.++|+
T Consensus 237 DMMvANshNLIiTVk 251 (358)
T KOG3606|consen 237 DMMVANSHNLIITVK 251 (358)
T ss_pred HHHhhcccceEEEec
Confidence 988777777777775
No 17
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.87 E-value=1.3e-08 Score=65.82 Aligned_cols=59 Identities=32% Similarity=0.403 Sum_probs=49.0
Q ss_pred CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhC--CCCeEEEEEEECC
Q psy7774 112 AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK--PADKVTVLAHSDT 172 (173)
Q Consensus 112 ~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~--~g~~v~l~v~r~~ 172 (173)
..|++|..|.++++|+.+||+.||+|++|||..+.++ .+....+.. .+..+.+++.|+.
T Consensus 9 ~~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~~~--~d~~~~l~~~~~g~~v~l~v~r~g 69 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAVLHTGDVIYSINGTPITTL--EDFMEALKPTKPGEVITVTVLPST 69 (79)
T ss_pred CCcEEEEEECCCChHHhcCCCCCCEEEEECCEEcCCH--HHHHHHHhcCCCCCEEEEEEEECC
Confidence 3578999999999999999999999999999999854 455555543 5788999998864
No 18
>KOG3571|consensus
Probab=98.86 E-value=1.1e-08 Score=85.07 Aligned_cols=82 Identities=23% Similarity=0.335 Sum_probs=68.3
Q ss_pred CCEEEEEEccCCCcccEEEEccC----CCCEEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHHhC---C
Q psy7774 89 EPRFLMIETRKCSNLGISLVGGN----AVGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAK---P 160 (173)
Q Consensus 89 ~~~~v~l~~~~~~~lG~~l~gg~----~~~i~V~~v~~gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~---~ 160 (173)
...+|+|.-.....||++|+|.. +.||||..|.+||+-+. +++.+||.||+||.+++++++..+||..|+. .
T Consensus 249 nIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~ 328 (626)
T KOG3571|consen 249 NIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSR 328 (626)
T ss_pred eEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhcc
Confidence 44566666666667999999843 77999999999999888 5699999999999999999999999999974 4
Q ss_pred CCeEEEEEEE
Q psy7774 161 ADKVTVLAHS 170 (173)
Q Consensus 161 g~~v~l~v~r 170 (173)
..+++|+|..
T Consensus 329 ~gPi~ltvAk 338 (626)
T KOG3571|consen 329 PGPIKLTVAK 338 (626)
T ss_pred CCCeEEEEee
Confidence 5667777753
No 19
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.82 E-value=3.6e-08 Score=63.48 Aligned_cols=66 Identities=27% Similarity=0.304 Sum_probs=50.5
Q ss_pred ccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774 103 LGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT 172 (173)
Q Consensus 103 lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~ 172 (173)
+|+.+.. .+.+++|..|.++++|+.+||++||+|++|||..+.+ ..+++..+ ..+..+.+++.|+.
T Consensus 3 ~G~~~~~-~~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~~--~~~~l~~~-~~~~~v~l~v~r~g 68 (80)
T cd00990 3 LGLTLDK-EEGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDA--LQDRLKEY-QAGDPVELTVFRDD 68 (80)
T ss_pred ccEEEEc-cCCcEEEEEECCCChHHHhCCCCCCEEEEECCEEhHH--HHHHHHhc-CCCCEEEEEEEECC
Confidence 5776643 2457999999999999999999999999999999876 23332222 46778888888753
No 20
>KOG3651|consensus
Probab=98.81 E-value=2.4e-08 Score=78.64 Aligned_cols=79 Identities=22% Similarity=0.329 Sum_probs=69.7
Q ss_pred CEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEE
Q psy7774 90 PRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166 (173)
Q Consensus 90 ~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l 166 (173)
+-.|+|.|...+-+|++|.||. =+.+||.+|+.++||++ +.++.||.|++|||+++++.+-.++..++.-.-++|.+
T Consensus 5 ~~~v~ltKD~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~I 84 (429)
T KOG3651|consen 5 SETVELTKDEKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKI 84 (429)
T ss_pred cCcEEEeeccccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEE
Confidence 3468999988778899999887 35799999999999999 45999999999999999999999999999888888877
Q ss_pred EE
Q psy7774 167 LA 168 (173)
Q Consensus 167 ~v 168 (173)
.+
T Consensus 85 hy 86 (429)
T KOG3651|consen 85 HY 86 (429)
T ss_pred Ee
Confidence 64
No 21
>KOG3542|consensus
Probab=98.77 E-value=1.5e-08 Score=87.24 Aligned_cols=81 Identities=32% Similarity=0.534 Sum_probs=69.9
Q ss_pred CCEEEEEEc-cCCCcccEEEEccC--CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774 89 EPRFLMIET-RKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT 165 (173)
Q Consensus 89 ~~~~v~l~~-~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~ 165 (173)
.+|.|.|.| .....+-|++.||. +-+|||..|.||+.|++.||+.||+|++|||++.++++...|..+|+.. ..+.
T Consensus 535 K~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis~~KA~eiLrnn-thLt 613 (1283)
T KOG3542|consen 535 KPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENISAKKAEEILRNN-THLT 613 (1283)
T ss_pred cceeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhhHHHHHHHhcCC-ceEE
Confidence 689999998 44689999999987 5689999999999999999999999999999999999999998877643 4566
Q ss_pred EEEEE
Q psy7774 166 VLAHS 170 (173)
Q Consensus 166 l~v~r 170 (173)
|+|+-
T Consensus 614 ltvKt 618 (1283)
T KOG3542|consen 614 LTVKT 618 (1283)
T ss_pred EEEec
Confidence 66653
No 22
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.74 E-value=8.7e-08 Score=79.62 Aligned_cols=73 Identities=25% Similarity=0.334 Sum_probs=60.5
Q ss_pred CCCcccEEEEccCC-----CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh-CCCCeEEEEEEEC
Q psy7774 99 KCSNLGISLVGGNA-----VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA-KPADKVTVLAHSD 171 (173)
Q Consensus 99 ~~~~lG~~l~gg~~-----~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~-~~g~~v~l~v~r~ 171 (173)
...|+|+.+.-... .+++|..|.+++||+++||+.||+|++|||.++.+++..++...++ ..+..+.|++.|.
T Consensus 83 ~~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~ 161 (389)
T PLN00049 83 AVTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAGIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRG 161 (389)
T ss_pred CceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEEC
Confidence 34678888753221 3799999999999999999999999999999999988888877775 4678899998875
No 23
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.74 E-value=6.3e-08 Score=80.72 Aligned_cols=73 Identities=29% Similarity=0.413 Sum_probs=65.2
Q ss_pred CCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh-CCCCeEEEEEEEC
Q psy7774 99 KCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA-KPADKVTVLAHSD 171 (173)
Q Consensus 99 ~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~-~~g~~v~l~v~r~ 171 (173)
...|+|+.+.-....++.|..+.+++||+++||++||+|+.|||.++.+++-.+++..++ ..|..|+|++.|.
T Consensus 98 ~~~GiG~~i~~~~~~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~ 171 (406)
T COG0793 98 EFGGIGIELQMEDIGGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA 171 (406)
T ss_pred cccceeEEEEEecCCCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence 347888888765547899999999999999999999999999999999999999998887 6789999999996
No 24
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.71 E-value=7.8e-08 Score=63.11 Aligned_cols=58 Identities=40% Similarity=0.550 Sum_probs=47.6
Q ss_pred CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeEEEEEEECC
Q psy7774 113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTVLAHSDT 172 (173)
Q Consensus 113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v~l~v~r~~ 172 (173)
.+++|..|.++++|+++||+.||+|++|||..+.++.. ....+. ..+..+.+++.|+.
T Consensus 24 ~g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~~~~--~~~~l~~~~~~~~i~l~v~r~g 83 (90)
T cd00987 24 KGVLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSVAD--LRRALAELKPGDKVTLTVLRGG 83 (90)
T ss_pred CEEEEEEECCCCHHHHcCCCcCCEEEEECCEECCCHHH--HHHHHHhcCCCCEEEEEEEECC
Confidence 47899999999999999999999999999999986544 333443 34888999998763
No 25
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.69 E-value=2.2e-07 Score=59.49 Aligned_cols=67 Identities=28% Similarity=0.457 Sum_probs=51.1
Q ss_pred ccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhC-CCCeEEEEEEECC
Q psy7774 103 LGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK-PADKVTVLAHSDT 172 (173)
Q Consensus 103 lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~-~g~~v~l~v~r~~ 172 (173)
|||... .....++|..|.++++|+.+||+.||+|++|||..+.++ .+....+.. .+..+.+++.|+.
T Consensus 3 ~~~~~g-~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~--~~~~~~l~~~~~~~~~l~v~r~~ 70 (79)
T cd00989 3 LGFVPG-GPPIEPVIGEVVPGSPAAKAGLKAGDRILAINGQKIKSW--EDLVDAVQENPGKPLTLTVERNG 70 (79)
T ss_pred eeEecc-CCccCcEEEeECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHHCCCceEEEEEEECC
Confidence 455432 223468899999999999999999999999999999854 555555543 4778899888753
No 26
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.66 E-value=1.7e-07 Score=60.32 Aligned_cols=57 Identities=30% Similarity=0.470 Sum_probs=46.4
Q ss_pred CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeEEEEEEECC
Q psy7774 113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTVLAHSDT 172 (173)
Q Consensus 113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v~l~v~r~~ 172 (173)
.|++|..|.++++|+. +|+.||+|++|||..+.+ .++....+. ..+..+.|++.|..
T Consensus 8 ~Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~~~v~l~v~r~g 66 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPFKE--AEELIDYIQSKKEGDTVKLKVKREE 66 (79)
T ss_pred cCEEEEEECCCCchhh-CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECC
Confidence 4689999999999987 799999999999999975 445555554 46788999998863
No 27
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.64 E-value=1.9e-07 Score=76.01 Aligned_cols=71 Identities=24% Similarity=0.332 Sum_probs=59.3
Q ss_pred CcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh-CCCCeEEEEEEECC
Q psy7774 101 SNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA-KPADKVTVLAHSDT 172 (173)
Q Consensus 101 ~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~-~~g~~v~l~v~r~~ 172 (173)
.++|+.+.-. ..+++|..|.+++||+++||+.||+|++|||..+.+++..++...+. ..+..+.|++.|..
T Consensus 51 ~~lG~~~~~~-~~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g 122 (334)
T TIGR00225 51 EGIGIQVGMD-DGEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAG 122 (334)
T ss_pred EEEEEEEEEE-CCEEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCC
Confidence 5788887532 34789999999999999999999999999999999987777766665 46889999998863
No 28
>KOG3552|consensus
Probab=98.61 E-value=7.3e-08 Score=85.18 Aligned_cols=78 Identities=26% Similarity=0.389 Sum_probs=67.3
Q ss_pred CCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEE
Q psy7774 89 EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLA 168 (173)
Q Consensus 89 ~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v 168 (173)
+||.|.+.+.. .|||.+..| .+++|..|.+|||+.- .|++||+|+.|||.+++++.++.++.+++.+...|.|+|
T Consensus 55 ~pr~vq~~r~~--~lGFgfvag--rPviVr~VT~GGps~G-KL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV 129 (1298)
T KOG3552|consen 55 EPRQVQLQRNA--SLGFGFVAG--RPVIVRFVTEGGPSIG-KLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTV 129 (1298)
T ss_pred cchhhhhhccc--cccceeecC--CceEEEEecCCCCccc-cccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEE
Confidence 58999998866 555555555 7899999999999753 499999999999999999999999999999999999998
Q ss_pred EEC
Q psy7774 169 HSD 171 (173)
Q Consensus 169 ~r~ 171 (173)
.+.
T Consensus 130 ~qP 132 (1298)
T KOG3552|consen 130 CQP 132 (1298)
T ss_pred ecc
Confidence 763
No 29
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.57 E-value=1.4e-06 Score=73.24 Aligned_cols=58 Identities=33% Similarity=0.392 Sum_probs=49.6
Q ss_pred CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeEEEEEEECC
Q psy7774 113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTVLAHSDT 172 (173)
Q Consensus 113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v~l~v~r~~ 172 (173)
.|++|..|.++++|+++||+.||+|++|||..+.++ .+...+++ +.++.+.|++.|+.
T Consensus 362 ~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~s~--~d~~~~l~~~~~g~~v~l~v~R~g 421 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSSV--AELRKVLDRAKKGGRVALLILRGG 421 (428)
T ss_pred CceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECC
Confidence 589999999999999999999999999999999765 44555554 46889999999874
No 30
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.52 E-value=4.9e-07 Score=76.02 Aligned_cols=60 Identities=33% Similarity=0.377 Sum_probs=49.6
Q ss_pred CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774 113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT 172 (173)
Q Consensus 113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~ 172 (173)
.+++|..|.+++||+++||+.||+|++|||..+.++............+..+.|++.|+.
T Consensus 257 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i~~~~~~~~~l~~~~~g~~v~l~v~R~g 316 (428)
T TIGR02037 257 RGALVAQVLPGSPAEKAGLKAGDVILSVNGKPISSFADLRRAIGTLKPGKKVTLGILRKG 316 (428)
T ss_pred CceEEEEccCCCChHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 589999999999999999999999999999999876544333233467889999998863
No 31
>KOG0609|consensus
Probab=98.49 E-value=5.9e-07 Score=75.61 Aligned_cols=82 Identities=23% Similarity=0.312 Sum_probs=72.6
Q ss_pred CCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEE
Q psy7774 89 EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167 (173)
Q Consensus 89 ~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~ 167 (173)
..+.|.+.|..+..+|.++.-.....+||.+|..||.+++.| |+.||.|++|||..+.+..-.++..+++...+.++++
T Consensus 122 ~vriv~i~k~~~eplG~Tik~~e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~itfk 201 (542)
T KOG0609|consen 122 AVRIVRIVKNTGEPLGATIRVEEDTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSITFK 201 (542)
T ss_pred eeEEEEEeecCCCccceEEEeccCCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEEEE
Confidence 357788888767999999987665589999999999999966 9999999999999999999999999999888999988
Q ss_pred EEE
Q psy7774 168 AHS 170 (173)
Q Consensus 168 v~r 170 (173)
+.-
T Consensus 202 iiP 204 (542)
T KOG0609|consen 202 IIP 204 (542)
T ss_pred Ecc
Confidence 743
No 32
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.45 E-value=7.7e-07 Score=78.20 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=58.4
Q ss_pred CCcccEEEEccCCCCEEEEEecCCCccccc-CCCCCCEEEEECC-----EecCCCCHHHHHHHHh-CCCCeEEEEEEEC
Q psy7774 100 CSNLGISLVGGNAVGIYVHSVQSGSLGYSA-GLRTGDRILEYNG-----TDLRAATAEEAAYELA-KPADKVTVLAHSD 171 (173)
Q Consensus 100 ~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~-gL~~gD~Il~Vng-----~~~~~~~~~~~~~~l~-~~g~~v~l~v~r~ 171 (173)
..|+|+.+.- .+..++|..|.+||||+++ ||++||+|++||+ .++.+++..+++.+++ ..|..|.|+|.|.
T Consensus 243 ~~GIGa~l~~-~~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~ 320 (667)
T PRK11186 243 LEGIGAVLQM-DDDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA 320 (667)
T ss_pred eeEEEEEEEE-eCCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence 3577887754 2346899999999999996 8999999999994 3566788889998887 6788999999873
No 33
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=98.43 E-value=1.1e-06 Score=69.16 Aligned_cols=71 Identities=25% Similarity=0.362 Sum_probs=53.7
Q ss_pred cccEEEE--ccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774 102 NLGISLV--GGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT 172 (173)
Q Consensus 102 ~lG~~l~--gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~ 172 (173)
.+|+... ++...|+.|..+.++++|+++||+.||+|++|||.++.+......+..-...++.+.|+|.|+.
T Consensus 178 ~lgi~p~~~~g~~~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~~~~~~~~l~~~~~~~~v~l~V~R~G 250 (259)
T TIGR01713 178 YIRLSPVMKNDKLEGYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLRDPEQAFQALQMLREETNLTLTVERDG 250 (259)
T ss_pred eEeEEEEEeCCceeEEEEEecCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCeEEEEEEECC
Confidence 3455542 3335689999999999999999999999999999999875443332222356789999999974
No 34
>PRK10139 serine endoprotease; Provisional
Probab=98.31 E-value=2e-06 Score=72.88 Aligned_cols=58 Identities=26% Similarity=0.356 Sum_probs=48.5
Q ss_pred CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHH--hCCCCeEEEEEEECC
Q psy7774 113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYEL--AKPADKVTVLAHSDT 172 (173)
Q Consensus 113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l--~~~g~~v~l~v~r~~ 172 (173)
.|++|..|.++++|+++||+.||+|++|||..+.++.. ....+ ...++.+.|++.|+.
T Consensus 290 ~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~~d--l~~~l~~~~~g~~v~l~V~R~G 349 (455)
T PRK10139 290 RGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLNSFAE--LRSRIATTEPGTKVKLGLLRNG 349 (455)
T ss_pred CceEEEEECCCChHHHCCCCCCCEEEEECCEECCCHHH--HHHHHHhcCCCCEEEEEEEECC
Confidence 48999999999999999999999999999999987644 43344 357889999998863
No 35
>PRK10898 serine endoprotease; Provisional
Probab=98.29 E-value=2.6e-06 Score=70.01 Aligned_cols=60 Identities=22% Similarity=0.289 Sum_probs=48.2
Q ss_pred CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774 113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT 172 (173)
Q Consensus 113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~ 172 (173)
.|++|..|.++++|+++||+.||+|++|||..+.++............++.+.|++.|..
T Consensus 279 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~~l~~~l~~~~~g~~v~l~v~R~g 338 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAISALETMDQVAEIRPGSVIPVVVMRDD 338 (353)
T ss_pred CeEEEEEECCCChHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 589999999999999999999999999999999765432222222367889999998863
No 36
>PRK10942 serine endoprotease; Provisional
Probab=98.27 E-value=2.9e-06 Score=72.26 Aligned_cols=60 Identities=27% Similarity=0.305 Sum_probs=49.0
Q ss_pred CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774 113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT 172 (173)
Q Consensus 113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~ 172 (173)
.|++|..|.++++|+++||+.||+|++|||..+.++............++.+.|++.|+.
T Consensus 311 ~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~v~R~G 370 (473)
T PRK10942 311 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDG 370 (473)
T ss_pred CceEEEEECCCChHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 489999999999999999999999999999999876544333223456888999998863
No 37
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=98.26 E-value=2.5e-06 Score=69.99 Aligned_cols=58 Identities=29% Similarity=0.428 Sum_probs=48.4
Q ss_pred CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeEEEEEEECC
Q psy7774 113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTVLAHSDT 172 (173)
Q Consensus 113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v~l~v~r~~ 172 (173)
.|++|..|.++++|+++||+.||+|++|||..+.++.. ....+. +.++.+.|++.|+.
T Consensus 278 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~d--l~~~l~~~~~g~~v~l~v~R~g 337 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAGILVRDVILKYDGKDVIGAEE--LMDRIAETRPGSKVMVTVLRQG 337 (351)
T ss_pred ccceEeecCCCChHHHCCCCCCCEEEEECCEEcCCHHH--HHHHHHhcCCCCEEEEEEEECC
Confidence 48999999999999999999999999999999976543 333443 57889999998863
No 38
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.26 E-value=1.7e-06 Score=73.24 Aligned_cols=59 Identities=14% Similarity=0.085 Sum_probs=49.6
Q ss_pred CEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT 172 (173)
Q Consensus 114 ~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~ 172 (173)
..+|..|.++|||+++||+.||+|++|||..+.++............++++.+++.|+.
T Consensus 127 ~~lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~g 185 (449)
T PRK10779 127 RPVVGEIAPNSIAAQAQIAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFG 185 (449)
T ss_pred CccccccCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCC
Confidence 34799999999999999999999999999999988665554444567788999998864
No 39
>KOG3605|consensus
Probab=98.24 E-value=1.9e-06 Score=74.02 Aligned_cols=82 Identities=22% Similarity=0.302 Sum_probs=66.4
Q ss_pred CCEEEEEEccCCCcccEEEEc-cC---CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCC--
Q psy7774 89 EPRFLMIETRKCSNLGISLVG-GN---AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPA-- 161 (173)
Q Consensus 89 ~~~~v~l~~~~~~~lG~~l~g-g~---~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g-- 161 (173)
-.+.|.+.|..++.||+-|+- |. -..++|.....+|||+++| |-.||+|++|||.++-++.......++|...
T Consensus 645 ~qKEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQ 724 (829)
T KOG3605|consen 645 NQKEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQ 724 (829)
T ss_pred ccceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhccccc
Confidence 347899999999999999864 22 3467899999999999966 9999999999999999999988888887543
Q ss_pred CeEEEEEEE
Q psy7774 162 DKVTVLAHS 170 (173)
Q Consensus 162 ~~v~l~v~r 170 (173)
..|+|.|.+
T Consensus 725 T~VkltiV~ 733 (829)
T KOG3605|consen 725 TAVKLNIVS 733 (829)
T ss_pred ceEEEEEec
Confidence 345555544
No 40
>PRK10139 serine endoprotease; Provisional
Probab=98.18 E-value=6.8e-06 Score=69.66 Aligned_cols=58 Identities=24% Similarity=0.276 Sum_probs=48.9
Q ss_pred CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774 113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT 172 (173)
Q Consensus 113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~ 172 (173)
.|++|..|.++++|+++||+.||+|++|||..+.+ +++....+++..+.+.|++.|+.
T Consensus 390 ~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~v~l~v~R~g 447 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNS--IAEMRKVLAAKPAIIALQIVRGN 447 (455)
T ss_pred CceEEEEeCCCChHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEEEEECC
Confidence 47899999999999999999999999999999965 45565666555578899998874
No 41
>PRK10942 serine endoprotease; Provisional
Probab=98.12 E-value=1.1e-05 Score=68.76 Aligned_cols=58 Identities=21% Similarity=0.307 Sum_probs=49.7
Q ss_pred CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774 113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT 172 (173)
Q Consensus 113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~ 172 (173)
.+++|..|.++++|+++||+.||+|++|||..+.++ .+....+...+..+.|+|.|..
T Consensus 408 ~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~s~--~dl~~~l~~~~~~v~l~V~R~g 465 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIGLKKGDVIIGANQQPVKNI--AELRKILDSKPSVLALNIQRGD 465 (473)
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhCCCeEEEEEEECC
Confidence 479999999999999999999999999999999764 5566666655678899999864
No 42
>KOG3605|consensus
Probab=98.12 E-value=2.6e-06 Score=73.17 Aligned_cols=70 Identities=26% Similarity=0.441 Sum_probs=57.9
Q ss_pred EEEEEEccC-CCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774 91 RFLMIETRK-CSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT 165 (173)
Q Consensus 91 ~~v~l~~~~-~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~ 165 (173)
.+|.|.|.+ -.-|||++..| +|..+..||.|+++|+++|.+|++|||.++-...|+.++.+|..+-++|.
T Consensus 738 ~~V~I~RPd~kyQLGFSVQNG-----iICSLlRGGIAERGGVRVGHRIIEINgQSVVA~pHekIV~lLs~aVGEIh 808 (829)
T KOG3605|consen 738 TTVLIRRPDLRYQLGFSVQNG-----IICSLLRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVQLLSNAVGEIH 808 (829)
T ss_pred eEEEeecccchhhccceeeCc-----EeehhhcccchhccCceeeeeEEEECCceEEeccHHHHHHHHHHhhhhhh
Confidence 456666543 45789999865 58889999999999999999999999999999999999999976544443
No 43
>KOG3938|consensus
Probab=98.10 E-value=6.6e-06 Score=63.88 Aligned_cols=81 Identities=19% Similarity=0.278 Sum_probs=69.3
Q ss_pred CCCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeE
Q psy7774 88 GEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKV 164 (173)
Q Consensus 88 ~~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v 164 (173)
.+++.|.+.|.. +.||++|...-..-.||..|.+||.-++ ..+++||.|-+|||+++-++.|.++..+|+ ..|...
T Consensus 125 Gq~kEv~v~Kse-dalGlTITDNG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~f 203 (334)
T KOG3938|consen 125 GQAKEVEVVKSE-DALGLTITDNGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETF 203 (334)
T ss_pred CcceeEEEEecc-cccceEEeeCCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCee
Confidence 367889999987 8999999864445579999999999998 569999999999999999999999999998 467777
Q ss_pred EEEEE
Q psy7774 165 TVLAH 169 (173)
Q Consensus 165 ~l~v~ 169 (173)
+|.+.
T Consensus 204 tlrLi 208 (334)
T KOG3938|consen 204 TLRLI 208 (334)
T ss_pred EEEee
Confidence 76653
No 44
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.08 E-value=1.1e-05 Score=67.75 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=48.5
Q ss_pred CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh-CCCCeEEEEEEECC
Q psy7774 113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA-KPADKVTVLAHSDT 172 (173)
Q Consensus 113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~-~~g~~v~l~v~r~~ 172 (173)
.++.|..|.++++|+++||++||+|++|||.++.+ .++....++ ..++.+.+++.|+.
T Consensus 203 ~g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~s--~~dl~~~l~~~~~~~v~l~v~R~g 261 (420)
T TIGR00054 203 IEPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLRS--WTDFVSAVKENPGKSMDIKVERNG 261 (420)
T ss_pred cCcEEEEECCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCceEEEEEECC
Confidence 46899999999999999999999999999999975 455555664 46778899998864
No 45
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.04 E-value=1.3e-05 Score=67.96 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=47.2
Q ss_pred CEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh-CCCCeEEEEEEECC
Q psy7774 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA-KPADKVTVLAHSDT 172 (173)
Q Consensus 114 ~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~-~~g~~v~l~v~r~~ 172 (173)
++.|..|.++|+|+++||++||+|++|||..+.++ ++....+. ..++.+.+++.|+.
T Consensus 222 ~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~s~--~dl~~~l~~~~~~~v~l~v~R~g 279 (449)
T PRK10779 222 EPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLTQW--QTFVTLVRDNPGKPLALEIERQG 279 (449)
T ss_pred CcEEEeeCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhCCCCEEEEEEEECC
Confidence 57899999999999999999999999999999754 44444554 46778999998864
No 46
>KOG4371|consensus
Probab=97.98 E-value=2.7e-05 Score=70.14 Aligned_cols=124 Identities=23% Similarity=0.350 Sum_probs=92.1
Q ss_pred ccHHHHHHHHhhCCCeEEEEEEeCCCccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCccccCCCCC
Q psy7774 4 ATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGSPTPCNSPGTNRKSSIQHNTSTLTRTHVCK 83 (173)
Q Consensus 4 ~th~~av~~L~~~g~~v~L~V~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (173)
--|++|+.+++..|+.|.|-|+|.+..|.+.-...+ +..
T Consensus 1204 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~d~~~~s~----------------~~~------------------------- 1242 (1332)
T KOG4371|consen 1204 KVHQEVVAMLRGGGDRVVLGVQRPPPAYSDQHHASS----------------TSA------------------------- 1242 (1332)
T ss_pred hhhHHHHHHHhccCceEEEEeecCCcccccchhhhh----------------hcc-------------------------
Confidence 358999999999999999999999887654211000 000
Q ss_pred CCCCCCCEEEEEEccCCCcccEEEEccC-CCCEEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHHhCCC
Q psy7774 84 DERSGEPRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAKPA 161 (173)
Q Consensus 84 ~~~~~~~~~v~l~~~~~~~lG~~l~gg~-~~~i~V~~v~~gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g 161 (173)
......+.+.+.+-.++|+.+.... ..++|+..+...++|.. +.++.||+++..+|+++.+.+..+....++-.-
T Consensus 1243 ---~~~l~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~ 1319 (1332)
T KOG4371|consen 1243 ---SAPLISVMLLKKPMATLGLSLAKRTMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQ 1319 (1332)
T ss_pred ---cchhhhheeeecccccccccccccCcCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhcc
Confidence 0012334555555588999886544 56899999988888877 559999999999999999999888877777777
Q ss_pred CeEEEEEEEC
Q psy7774 162 DKVTVLAHSD 171 (173)
Q Consensus 162 ~~v~l~v~r~ 171 (173)
+++.++++|.
T Consensus 1320 ~p~~~~~~~~ 1329 (1332)
T KOG4371|consen 1320 GPVQITVTRE 1329 (1332)
T ss_pred Cchhheehhh
Confidence 7777777653
No 47
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.74 E-value=5.3e-05 Score=63.70 Aligned_cols=57 Identities=25% Similarity=0.382 Sum_probs=44.2
Q ss_pred CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEEC
Q psy7774 113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSD 171 (173)
Q Consensus 113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~ 171 (173)
.+.+|..|.++|||+++||+.||+|++|||..+.+...... .+....+++.+.+.|+
T Consensus 128 ~g~~V~~V~~~SpA~~AGL~~GDvI~~vng~~v~~~~dl~~--~ia~~~~~v~~~I~r~ 184 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAGIEPGDEILSVNGNKIPGFKDVRQ--QIADIAGEPMVEILAE 184 (420)
T ss_pred CCceeeccCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHH--HHHhhcccceEEEEEe
Confidence 57789999999999999999999999999999987654333 3322116777777664
No 48
>KOG0606|consensus
Probab=97.74 E-value=0.00011 Score=66.81 Aligned_cols=78 Identities=31% Similarity=0.382 Sum_probs=65.5
Q ss_pred EEEEEccCCCcccEEEE------ccCC---CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCC
Q psy7774 92 FLMIETRKCSNLGISLV------GGNA---VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPAD 162 (173)
Q Consensus 92 ~v~l~~~~~~~lG~~l~------gg~~---~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~ 162 (173)
.|.+.+.+ .+|||++. |+.+ .--.|..|.+|++|..+||+.||.|+.|||..+.++.|.+++.++.+.|.
T Consensus 629 pI~i~~~~-~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll~~gn 707 (1205)
T KOG0606|consen 629 PITIHFSG-KKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLLKSGN 707 (1205)
T ss_pred ceeeeccc-cccCceeeeEEEecCCcccceeeeeeeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHHHHhcCC
Confidence 36777765 89998874 3332 23568899999999999999999999999999999999999999999999
Q ss_pred eEEEEEEE
Q psy7774 163 KVTVLAHS 170 (173)
Q Consensus 163 ~v~l~v~r 170 (173)
.|.+.+.-
T Consensus 708 ~v~~~ttp 715 (1205)
T KOG0606|consen 708 KVTLRTTP 715 (1205)
T ss_pred eeEEEeec
Confidence 99887654
No 49
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=97.72 E-value=0.00054 Score=45.11 Aligned_cols=59 Identities=24% Similarity=0.284 Sum_probs=37.1
Q ss_pred CCEEEEEecCC--------CcccccC--CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774 113 VGIYVHSVQSG--------SLGYSAG--LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT 172 (173)
Q Consensus 113 ~~i~V~~v~~g--------s~A~~~g--L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~ 172 (173)
.+..|.+|.+| ||....| ++.||.|++|||+.+.....-.. .+..+++.+|.|+|.+..
T Consensus 12 ~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~~~~~-lL~~~agk~V~Ltv~~~~ 80 (88)
T PF14685_consen 12 GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADANPYR-LLEGKAGKQVLLTVNRKP 80 (88)
T ss_dssp TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB-HHH-HHHTTTTSEEEEEEE-ST
T ss_pred CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCCCHHH-HhcccCCCEEEEEEecCC
Confidence 45667888776 5555544 77999999999999975433222 234578999999998865
No 50
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=97.67 E-value=0.00028 Score=58.65 Aligned_cols=68 Identities=26% Similarity=0.442 Sum_probs=50.0
Q ss_pred CCcccEEEEccCCCCEEEEEec--------CCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh-CCCCeEEEEEEE
Q psy7774 100 CSNLGISLVGGNAVGIYVHSVQ--------SGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA-KPADKVTVLAHS 170 (173)
Q Consensus 100 ~~~lG~~l~gg~~~~i~V~~v~--------~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~-~~g~~v~l~v~r 170 (173)
+..+|+.+. ..||+|.... .++||+.+||+.||.|++|||..+.++ .+....+. ..+..+.|++.|
T Consensus 95 G~~iGI~l~---t~GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~V~s~--~DL~~iL~~~~g~~V~LtV~R 169 (402)
T TIGR02860 95 GQSIGVKLN---TKGVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEKIKNM--DDLANLINKAGGEKLTLTIER 169 (402)
T ss_pred CEEEEEEEe---cCEEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCeEEEEEEE
Confidence 366777664 3467775542 268899999999999999999999765 45555554 347788999988
Q ss_pred CC
Q psy7774 171 DT 172 (173)
Q Consensus 171 ~~ 172 (173)
+.
T Consensus 170 ~G 171 (402)
T TIGR02860 170 GG 171 (402)
T ss_pred CC
Confidence 63
No 51
>KOG3129|consensus
Probab=97.62 E-value=0.00022 Score=53.71 Aligned_cols=59 Identities=24% Similarity=0.231 Sum_probs=44.5
Q ss_pred CEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHH--hCCCCeEEEEEEECC
Q psy7774 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYEL--AKPADKVTVLAHSDT 172 (173)
Q Consensus 114 ~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l--~~~g~~v~l~v~r~~ 172 (173)
=++|..|.++|||+.+||+.||.|+++..+.-.+....+-+... ...+..+.++|.|..
T Consensus 140 Fa~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g 200 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREG 200 (231)
T ss_pred eEEEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCC
Confidence 36899999999999999999999999988776665533322233 356777788887754
No 52
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.59 E-value=0.00064 Score=48.57 Aligned_cols=80 Identities=23% Similarity=0.136 Sum_probs=50.8
Q ss_pred CCEEEEEEcc----CCCcccEEEEccC-----CCCEEEEEecCCCcccccCCCC-CCEEEEECCEecCCCCHHHHHHHH-
Q psy7774 89 EPRFLMIETR----KCSNLGISLVGGN-----AVGIYVHSVQSGSLGYSAGLRT-GDRILEYNGTDLRAATAEEAAYEL- 157 (173)
Q Consensus 89 ~~~~v~l~~~----~~~~lG~~l~gg~-----~~~i~V~~v~~gs~A~~~gL~~-gD~Il~Vng~~~~~~~~~~~~~~l- 157 (173)
..|.|.+... ..+.||+++.-.. ..+.-|..|.|+|||+.+||++ .|.|+.+++..+.+.... ...+
T Consensus 10 ~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~~~~l--~~~v~ 87 (138)
T PF04495_consen 10 TTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDDEDDL--FELVE 87 (138)
T ss_dssp SEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--STCHH--HHHHH
T ss_pred eEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecCCHHHH--HHHHH
Confidence 4566766531 2367899886422 4578899999999999999998 699999999888865443 3334
Q ss_pred hCCCCeEEEEEEE
Q psy7774 158 AKPADKVTVLAHS 170 (173)
Q Consensus 158 ~~~g~~v~l~v~r 170 (173)
...+.++.|.|-.
T Consensus 88 ~~~~~~l~L~Vyn 100 (138)
T PF04495_consen 88 ANENKPLQLYVYN 100 (138)
T ss_dssp HTTTS-EEEEEEE
T ss_pred HcCCCcEEEEEEE
Confidence 4667788887743
No 53
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00037 Score=57.03 Aligned_cols=59 Identities=29% Similarity=0.370 Sum_probs=50.1
Q ss_pred CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEEC
Q psy7774 113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSD 171 (173)
Q Consensus 113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~ 171 (173)
.|++|..+.+++||+++|++.||.|+++||..+.+.............|..+.+.+.|.
T Consensus 270 ~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~~~~l~~~v~~~~~g~~v~~~~~r~ 328 (347)
T COG0265 270 AGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVASLSDLVAAVASNRPGDEVALKLLRG 328 (347)
T ss_pred CceEEEecCCCChHHHcCCCCCCEEEEECCEEccCHHHHHHHHhccCCCCEEEEEEEEC
Confidence 36899999999999999999999999999999987765555444445789999999886
No 54
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=97.19 E-value=0.0011 Score=52.51 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=34.5
Q ss_pred cccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774 127 YSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT 172 (173)
Q Consensus 127 ~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~ 172 (173)
..+||+.||.+++|||.++.+..+...+..--.....+.|+|+|+.
T Consensus 221 ~~~GLq~GDva~sING~dL~D~~qa~~l~~~L~~~tei~ltVeRdG 266 (276)
T PRK09681 221 DASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKG 266 (276)
T ss_pred HHcCCCCCCEEEEeCCeeCCCHHHHHHHHHHhccCCeEEEEEEECC
Confidence 3489999999999999999876543332222356788999999974
No 55
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.10 E-value=0.0003 Score=58.93 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=39.8
Q ss_pred EEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHH------H-H-hCCCCeEEEEEEE
Q psy7774 117 VHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAY------E-L-AKPADKVTVLAHS 170 (173)
Q Consensus 117 V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~------~-l-~~~g~~v~l~v~r 170 (173)
|..|.++|+|+.+||++||+|++|||..+.++..-.... + + ++.|....+.+..
T Consensus 2 I~~V~pgSpAe~AGLe~GD~IlsING~~V~Dw~D~~~~l~~e~l~L~V~~rdGe~~~l~Ie~ 63 (433)
T TIGR03279 2 ISAVLPGSIAEELGFEPGDALVSINGVAPRDLIDYQFLCADEELELEVLDANGESHQIEIEK 63 (433)
T ss_pred cCCcCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHhcCCcEEEEEEcCCCeEEEEEEec
Confidence 567899999999999999999999999998865543221 1 1 2445555666654
No 56
>KOG3549|consensus
Probab=97.05 E-value=0.0011 Score=53.66 Aligned_cols=31 Identities=16% Similarity=0.415 Sum_probs=25.9
Q ss_pred CCcccHHHHHHHHhhCCCeEEEEEE--eCCCcc
Q psy7774 1 MRSATYQLAASVLRQCGNSITMLVQ--YSPDKY 31 (173)
Q Consensus 1 l~~~th~~av~~L~~~g~~v~L~V~--r~~~~~ 31 (173)
+++++|||||++||++|+.|+|+|. |....|
T Consensus 113 v~~c~HeevV~iLRNAGdeVtlTV~~lr~ApaF 145 (505)
T KOG3549|consen 113 VTACPHEEVVNILRNAGDEVTLTVKHLRAAPAF 145 (505)
T ss_pred eecCChHHHHHHHHhcCCEEEEEeHhhhcCcHH
Confidence 3689999999999999999999995 444443
No 57
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=96.99 E-value=0.0011 Score=56.29 Aligned_cols=42 Identities=31% Similarity=0.467 Sum_probs=36.3
Q ss_pred CcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCE
Q psy7774 101 SNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGT 143 (173)
Q Consensus 101 ~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~ 143 (173)
..||+.+.. +.....|..|.++|||+.+||.+||.|++|||.
T Consensus 451 ~~LGl~v~~-~~g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~ 492 (558)
T COG3975 451 YYLGLKVKS-EGGHEKITFVFPGGPAYKAGLSPGDKIVAINGI 492 (558)
T ss_pred cccceEecc-cCCeeEEEecCCCChhHhccCCCccEEEEEcCc
Confidence 477877652 345789999999999999999999999999998
No 58
>KOG3532|consensus
Probab=96.94 E-value=0.0029 Score=55.43 Aligned_cols=74 Identities=22% Similarity=0.312 Sum_probs=56.5
Q ss_pred EEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEE
Q psy7774 95 IETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHS 170 (173)
Q Consensus 95 l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r 170 (173)
+.+..+..+|+.+.......|-|..|.++++|+++.+++||.+++|||+++. +..++...++.....+...+.|
T Consensus 380 ~~~~~s~~ig~vf~~~~~~~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~l~~~ 453 (1051)
T KOG3532|consen 380 SRYDVSSPIGLVFDKNTNRAVKVCTVEDNSLADKAAFKPGDVLVAINNVPIR--SERQATRFLQSTTGDLTVLVER 453 (1051)
T ss_pred ccccccCceeEEEecCCceEEEEEEecCCChhhHhcCCCcceEEEecCccch--hHHHHHHHHHhcccceEEEEee
Confidence 3344457788887765566788999999999999999999999999999996 4566777777655555544433
No 59
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=96.93 E-value=0.0031 Score=50.54 Aligned_cols=57 Identities=30% Similarity=0.415 Sum_probs=46.0
Q ss_pred CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHH--hCCCCeEEEEEEECC
Q psy7774 113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYEL--AKPADKVTVLAHSDT 172 (173)
Q Consensus 113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l--~~~g~~v~l~v~r~~ 172 (173)
.|||+..+..++++.. -|+.||.|++|||..+... ++....+ ++.|++|++.+.|..
T Consensus 130 ~gvyv~~v~~~~~~~g-kl~~gD~i~avdg~~f~s~--~e~i~~v~~~k~Gd~VtI~~~r~~ 188 (342)
T COG3480 130 AGVYVLSVIDNSPFKG-KLEAGDTIIAVDGEPFTSS--DELIDYVSSKKPGDEVTIDYERHN 188 (342)
T ss_pred eeEEEEEccCCcchhc-eeccCCeEEeeCCeecCCH--HHHHHHHhccCCCCeEEEEEEecc
Confidence 3799999999999744 4999999999999999765 4444444 578999999999743
No 60
>KOG3551|consensus
Probab=96.84 E-value=0.0033 Score=51.64 Aligned_cols=32 Identities=28% Similarity=0.500 Sum_probs=27.0
Q ss_pred CCcccHHHHHHHHhhCCCeEEEEEEe--CCCccC
Q psy7774 1 MRSATYQLAASVLRQCGNSITMLVQY--SPDKYH 32 (173)
Q Consensus 1 l~~~th~~av~~L~~~g~~v~L~V~r--~~~~~~ 32 (173)
|+++||+|||++||.+|..|.|.|.| +...|.
T Consensus 143 L~~AtHdeAVqaLKraGkeV~levKy~REvtPy~ 176 (506)
T KOG3551|consen 143 LRDATHDEAVQALKRAGKEVLLEVKYMREVTPYF 176 (506)
T ss_pred hhhcchHHHHHHHHhhCceeeeeeeeehhcchhh
Confidence 68899999999999999999999974 444443
No 61
>KOG1320|consensus
Probab=96.78 E-value=0.0049 Score=52.25 Aligned_cols=58 Identities=28% Similarity=0.391 Sum_probs=45.3
Q ss_pred CEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEEC
Q psy7774 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSD 171 (173)
Q Consensus 114 ~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~ 171 (173)
+++|++|.+++++..+++..||+|++|||..++++.|..-.......+++|.+..+|.
T Consensus 399 ~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~n~~~l~~~i~~~~~~~~v~vl~~~~ 456 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVKNLKHLYELIEECSTEDKVAVLDRRS 456 (473)
T ss_pred EEEEEEeccCCCcccccccCCCEEEEECCEEeechHHHHHHHHhcCcCceEEEEEecC
Confidence 6899999999999999999999999999999999877544333333345666665553
No 62
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=96.58 E-value=0.015 Score=45.00 Aligned_cols=70 Identities=23% Similarity=0.284 Sum_probs=47.1
Q ss_pred CEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeEEEE
Q psy7774 90 PRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTVL 167 (173)
Q Consensus 90 ~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v~l~ 167 (173)
.+...+.+++ +-+|+.+.-|+ +++.-+..||+.||..+++|+.++.+- +++..+++ ..-..+.|+
T Consensus 195 Irltpv~r~e-ki~Gyr~~pgk----------d~slF~~sglq~GDIavaiNnldltdp--~~m~~llq~l~~m~s~qlT 261 (275)
T COG3031 195 IRLTPVIRNE-KIEGYRFEPGK----------DGSLFYKSGLQRGDIAVAINNLDLTDP--EDMFRLLQMLRNMPSLQLT 261 (275)
T ss_pred eEeeeEeeCC-ceEEEEecCCC----------CcchhhhhcCCCcceEEEecCcccCCH--HHHHHHHHhhhcCcceEEE
Confidence 3444454544 67788776655 345556689999999999999887642 33333443 455678888
Q ss_pred EEECC
Q psy7774 168 AHSDT 172 (173)
Q Consensus 168 v~r~~ 172 (173)
|.|+.
T Consensus 262 v~R~G 266 (275)
T COG3031 262 VIRRG 266 (275)
T ss_pred EEecC
Confidence 88863
No 63
>KOG1738|consensus
Probab=96.42 E-value=0.0061 Score=52.82 Aligned_cols=70 Identities=11% Similarity=0.093 Sum_probs=58.7
Q ss_pred CCCcccEEEEccCCCCEEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEE
Q psy7774 99 KCSNLGISLVGGNAVGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLA 168 (173)
Q Consensus 99 ~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v 168 (173)
++.++|+.|....+...+|+.+.++++|+. .-+..||.++.||+..+.++.+.-.+..+.....-|.+++
T Consensus 211 p~eglg~~I~Ssydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~l 281 (638)
T KOG1738|consen 211 PSEGLGLYIDSSYDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTL 281 (638)
T ss_pred cccCCceEEeeecCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeee
Confidence 358999999877788899999999999998 4599999999999999999999999888876544444444
No 64
>KOG1421|consensus
Probab=95.69 E-value=0.029 Score=49.42 Aligned_cols=56 Identities=20% Similarity=0.163 Sum_probs=43.9
Q ss_pred CEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHH-hCCCCeEEEEEEECC
Q psy7774 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYEL-AKPADKVTVLAHSDT 172 (173)
Q Consensus 114 ~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l-~~~g~~v~l~v~r~~ 172 (173)
-+.|..|.++|+|++. |++||.+++||+..+.++ +++.+.+ +..|+.+.|+++|..
T Consensus 304 mLvV~~vL~~gpa~k~-Le~GDillavN~t~l~df--~~l~~iLDegvgk~l~LtI~Rgg 360 (955)
T KOG1421|consen 304 MLVVETVLPEGPAEKK-LEPGDILLAVNSTCLNDF--EALEQILDEGVGKNLELTIQRGG 360 (955)
T ss_pred eEEEEEeccCCchhhc-cCCCcEEEEEcceehHHH--HHHHHHHhhccCceEEEEEEeCC
Confidence 4678999999999885 999999999998777543 3333344 457899999999864
No 65
>KOG4407|consensus
Probab=94.20 E-value=0.05 Score=51.09 Aligned_cols=61 Identities=20% Similarity=0.350 Sum_probs=46.5
Q ss_pred CCEEEEEEccCCCcccEEEEc--------------------cC-------CCCEEEEEecCCCcccccCCCCCCEEEEEC
Q psy7774 89 EPRFLMIETRKCSNLGISLVG--------------------GN-------AVGIYVHSVQSGSLGYSAGLRTGDRILEYN 141 (173)
Q Consensus 89 ~~~~v~l~~~~~~~lG~~l~g--------------------g~-------~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vn 141 (173)
.+..+.+.|+++.||||+|+- |. ...+|+.++..++++..+|+..+|.|..|+
T Consensus 45 ~~~~~V~~rR~nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG~~s~~~v~~it 124 (1973)
T KOG4407|consen 45 QPKLIVIRRRPNQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSGSSSSVGVAGIT 124 (1973)
T ss_pred CCceEEEEecCCCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccCcccccceeeec
Confidence 344455555566999999864 11 115678888888888889999999999999
Q ss_pred CEecCCCC
Q psy7774 142 GTDLRAAT 149 (173)
Q Consensus 142 g~~~~~~~ 149 (173)
|..+.+.+
T Consensus 125 G~e~~~~T 132 (1973)
T KOG4407|consen 125 GLEPTSPT 132 (1973)
T ss_pred ccccCCCc
Confidence 99887766
No 66
>KOG4371|consensus
Probab=92.85 E-value=0.2 Score=46.27 Aligned_cols=78 Identities=17% Similarity=0.267 Sum_probs=59.6
Q ss_pred EEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774 93 LMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT 172 (173)
Q Consensus 93 v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~ 172 (173)
+.+.+.+ ..||..+..- ...+.++.....+.-..-.|+.||.++.+||+-+++.-|.+++..++..++.|.|-|+|..
T Consensus 1151 ~~~~r~~-~~l~~~~a~~-~~~~~~~~~~~~~~~~~pd~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 1228 (1332)
T KOG4371|consen 1151 VELDRNE-GSLGVQIASL-SGRVCIKQLTSEPAISHPDIRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGVQRPP 1228 (1332)
T ss_pred ccCCCCC-CCCCceeccC-ccceehhhcccCCCCCCCCcchhhhhhhccceeeechhhHHHHHHHhccCceEEEEeecCC
Confidence 4444555 6888877632 2345566655544444456999999999999999999999999999999999999999864
No 67
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=90.75 E-value=0.81 Score=37.63 Aligned_cols=54 Identities=30% Similarity=0.351 Sum_probs=39.1
Q ss_pred EEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCe---EEEEEEE
Q psy7774 116 YVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADK---VTVLAHS 170 (173)
Q Consensus 116 ~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~---v~l~v~r 170 (173)
++..+..+++|..++++.||+++++|+..+..+..-..... ...+.. +.+.+.|
T Consensus 132 ~~~~v~~~s~a~~a~l~~Gd~iv~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 132 VVGEVAPKSAAALAGLRPGDRIVAVDGEKVASWDDVRRLLV-AAAGDVFNLLTILVIR 188 (375)
T ss_pred eeeecCCCCHHHHcCCCCCCEEEeECCEEccCHHHHHHHHH-hccCCcccceEEEEEe
Confidence 34478899999999999999999999999987654333222 233333 6676666
No 68
>KOG3834|consensus
Probab=90.29 E-value=0.52 Score=39.57 Aligned_cols=58 Identities=28% Similarity=0.256 Sum_probs=42.3
Q ss_pred CCCCEEEEEecCCCcccccCCCC-CCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEE
Q psy7774 111 NAVGIYVHSVQSGSLGYSAGLRT-GDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAH 169 (173)
Q Consensus 111 ~~~~i~V~~v~~gs~A~~~gL~~-gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~ 169 (173)
...+.-|.+|..+++|.++||.. -|.|++|||..+... .+....+++..-..|+|++-
T Consensus 13 gteg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~d-nd~Lk~llk~~sekVkltv~ 71 (462)
T KOG3834|consen 13 GTEGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNKD-NDTLKALLKANSEKVKLTVY 71 (462)
T ss_pred CceeEEEEEeecCChHHhcCcchhhhhhheeCcccccCc-hHHHHHHHHhcccceEEEEE
Confidence 33455677899999999999665 789999999998643 34444566655555777764
No 69
>PF12812 PDZ_1: PDZ-like domain
Probab=89.78 E-value=0.74 Score=29.46 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=28.9
Q ss_pred EEEEEecCCCcccccCCCCCCEEEEECCEecCCCCH
Q psy7774 115 IYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATA 150 (173)
Q Consensus 115 i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~ 150 (173)
+++.....|+++...++..|-.|.+||+.++.++..
T Consensus 32 gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~Ld~ 67 (78)
T PF12812_consen 32 GVYVAVSGGSLAFAGGISKGFIITSVNGKPTPDLDD 67 (78)
T ss_pred EEEEEecCCChhhhCCCCCCeEEEeECCcCCcCHHH
Confidence 455556778887777799999999999999987643
No 70
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=88.66 E-value=7 Score=29.25 Aligned_cols=38 Identities=26% Similarity=0.311 Sum_probs=30.8
Q ss_pred ccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEEC
Q psy7774 103 LGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYN 141 (173)
Q Consensus 103 lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vn 141 (173)
.|+.+.. .+..+.|..|..||+|+++|+..|++|.+|-
T Consensus 113 ~GL~l~~-e~~~~~Vd~v~fgS~A~~~g~d~d~~I~~v~ 150 (183)
T PF11874_consen 113 AGLTLME-EGGKVIVDEVEFGSPAEKAGIDFDWEITEVE 150 (183)
T ss_pred CCCEEEe-eCCEEEEEecCCCCHHHHcCCCCCcEEEEEE
Confidence 4666553 3456899999999999999999999998873
No 71
>KOG3834|consensus
Probab=87.48 E-value=7.4 Score=32.90 Aligned_cols=77 Identities=22% Similarity=0.167 Sum_probs=46.1
Q ss_pred CCEEEEEEccCCCc---ccEEEEccC-----CCCEEEEEecCCCcccccCCC-CCCEEEEE-CCEecCCCCHHHHHHHH-
Q psy7774 89 EPRFLMIETRKCSN---LGISLVGGN-----AVGIYVHSVQSGSLGYSAGLR-TGDRILEY-NGTDLRAATAEEAAYEL- 157 (173)
Q Consensus 89 ~~~~v~l~~~~~~~---lG~~l~gg~-----~~~i~V~~v~~gs~A~~~gL~-~gD~Il~V-ng~~~~~~~~~~~~~~l- 157 (173)
+.|.+.|......+ ||++|+=-. ..--=|-.|.++++|+++||+ -+|-|+-+ +.+.- ..++...++
T Consensus 77 ~~R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~~~---~~eDl~~lIe 153 (462)
T KOG3834|consen 77 EVRIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAVMH---EEEDLFTLIE 153 (462)
T ss_pred eeEEEEecccccccccccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecchhhhcc---chHHHHHHHH
Confidence 34666666544334 777764222 222346678899999999988 68988877 44332 234444444
Q ss_pred hCCCCeEEEEE
Q psy7774 158 AKPADKVTVLA 168 (173)
Q Consensus 158 ~~~g~~v~l~v 168 (173)
.+.++.+.|.|
T Consensus 154 she~kpLklyV 164 (462)
T KOG3834|consen 154 SHEGKPLKLYV 164 (462)
T ss_pred hccCCCcceeE
Confidence 35566666554
No 72
>KOG3550|consensus
Probab=87.05 E-value=0.68 Score=33.49 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=28.3
Q ss_pred cccHHHHHHHHhhCCCeEEEEEEeCCCccCCCcC
Q psy7774 3 SATYQLAASVLRQCGNSITMLVQYSPDKYHELEG 36 (173)
Q Consensus 3 ~~th~~av~~L~~~g~~v~L~V~r~~~~~~~~~~ 36 (173)
+--|+.||++||.+-..|.|+|.|-|....+++.
T Consensus 150 ge~hekavellkaa~gsvklvvrytpkvleeme~ 183 (207)
T KOG3550|consen 150 GEHHEKAVELLKAAVGSVKLVVRYTPKVLEEMEA 183 (207)
T ss_pred chhhHHHHHHHHHhcCcEEEEEecChHHHHHHHH
Confidence 3469999999999999999999998887655543
No 73
>KOG4407|consensus
Probab=86.06 E-value=0.33 Score=45.96 Aligned_cols=55 Identities=22% Similarity=0.309 Sum_probs=47.8
Q ss_pred CEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEE
Q psy7774 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLA 168 (173)
Q Consensus 114 ~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v 168 (173)
.+||..|.++++|..+-|+.||+++.||...+.++...+++..+++.--.+.+.|
T Consensus 144 T~~~~eV~~n~~~~~a~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~ 198 (1973)
T KOG4407|consen 144 TIFIKEVQANGPAHYANLQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHV 198 (1973)
T ss_pred hhhhhhhccCChhHHHhhhccceeEEeecCcccchhhhhhhhhhccCCCCCCcee
Confidence 6899999999999999999999999999999999999999988887544444433
No 74
>KOG0708|consensus
Probab=84.86 E-value=1.1 Score=36.96 Aligned_cols=32 Identities=38% Similarity=0.604 Sum_probs=28.7
Q ss_pred CCcccHHHHHHHHhhCCCeEEEEEEeCCCccC
Q psy7774 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYH 32 (173)
Q Consensus 1 l~~~th~~av~~L~~~g~~v~L~V~r~~~~~~ 32 (173)
+++++|+++.+.|+.+|+.|++.+++.++.|.
T Consensus 8 ~~~~~~~~~a~~l~~sg~~~~i~~q~~~e~~~ 39 (359)
T KOG0708|consen 8 GRNATHEDAAAALKTSGDSVYIRAQYRPEEYD 39 (359)
T ss_pred cccchHHHHHHHhhcCCCceEEEEEechhhhc
Confidence 47899999999999999999999998887654
No 75
>KOG0792|consensus
Probab=81.91 E-value=3.5 Score=38.53 Aligned_cols=61 Identities=23% Similarity=0.367 Sum_probs=50.9
Q ss_pred CCcccEEEEccC-------CCCEEEEEec-------------CCCccccc--CCCCCCEEEEECCEecCCCCHHHHHHHH
Q psy7774 100 CSNLGISLVGGN-------AVGIYVHSVQ-------------SGSLGYSA--GLRTGDRILEYNGTDLRAATAEEAAYEL 157 (173)
Q Consensus 100 ~~~lG~~l~gg~-------~~~i~V~~v~-------------~gs~A~~~--gL~~gD~Il~Vng~~~~~~~~~~~~~~l 157 (173)
.+.+||.+.|+. ..++.++++. |++.|+.. .+..||+.+.|||.++....|+..+..+
T Consensus 715 ~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~i 794 (1144)
T KOG0792|consen 715 PGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLI 794 (1144)
T ss_pred CccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHHH
Confidence 467999999875 2467788888 88888773 4899999999999999999999999888
Q ss_pred hCC
Q psy7774 158 AKP 160 (173)
Q Consensus 158 ~~~ 160 (173)
+.+
T Consensus 795 rs~ 797 (1144)
T KOG0792|consen 795 RSP 797 (1144)
T ss_pred hhh
Confidence 754
No 76
>KOG2921|consensus
Probab=77.10 E-value=2.8 Score=35.05 Aligned_cols=36 Identities=31% Similarity=0.409 Sum_probs=31.9
Q ss_pred CCEEEEEecCCCcccc-cCCCCCCEEEEECCEecCCC
Q psy7774 113 VGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAA 148 (173)
Q Consensus 113 ~~i~V~~v~~gs~A~~-~gL~~gD~Il~Vng~~~~~~ 148 (173)
.++.|..|...||+.- -||.+||+|.++||.++.+.
T Consensus 220 ~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~v 256 (484)
T KOG2921|consen 220 EGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHKV 256 (484)
T ss_pred ceEEEEeccccCCCcCcccCCccceEEecCCcccCCH
Confidence 4899999999999876 48999999999999999764
No 77
>KOG1421|consensus
Probab=70.85 E-value=13 Score=33.58 Aligned_cols=44 Identities=30% Similarity=0.314 Sum_probs=36.6
Q ss_pred CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh
Q psy7774 112 AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA 158 (173)
Q Consensus 112 ~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~ 158 (173)
..|+|+.....|+||.+ +|+.-..|.+|||+.+-++ ++.+..++
T Consensus 861 p~gvyvt~rg~gspalq-~l~aa~fitavng~~t~~l--ddf~~~~~ 904 (955)
T KOG1421|consen 861 PEGVYVTSRGYGSPALQ-MLRAAHFITAVNGHDTNTL--DDFYHMLL 904 (955)
T ss_pred CCceEEeecccCChhHh-hcchheeEEEecccccCcH--HHHHHHHh
Confidence 35999999999999999 8999999999999998665 44454554
No 78
>KOG1703|consensus
Probab=60.81 E-value=3.7 Score=35.31 Aligned_cols=70 Identities=21% Similarity=0.307 Sum_probs=55.5
Q ss_pred cccEEEEccC-CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEEC
Q psy7774 102 NLGISLVGGN-AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSD 171 (173)
Q Consensus 102 ~lG~~l~gg~-~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~ 171 (173)
.|||.+.++. ...+-+..+.+++.+..+.+..+|.+..+++..-..+.|.++....+..+....+.+.|.
T Consensus 9 ~~~~r~~~~~~~~~l~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 79 (479)
T KOG1703|consen 9 PWGFRLQGGDFLQPLRILRVTPGGKAADAELDPGDIIAAIDGENEETMTHLEAQNKIKGSGSQLALTLSRS 79 (479)
T ss_pred CceeeecccccccccceeccCCCCccccccccccccccccccccccccccccccCcccccccccccccccc
Confidence 4555544432 335788999999999999999999999999999888999988877777777777777663
No 79
>PRK14755 transcriptional regulatory protein PufK; Provisional
Probab=60.43 E-value=9.4 Score=18.32 Aligned_cols=17 Identities=47% Similarity=0.503 Sum_probs=14.8
Q ss_pred CcccHHHHHHHHhhCCC
Q psy7774 2 RSATYQLAASVLRQCGN 18 (173)
Q Consensus 2 ~~~th~~av~~L~~~g~ 18 (173)
||-.|+.+..+|+..|.
T Consensus 5 rnprhqhvasvlrsgg~ 21 (26)
T PRK14755 5 RNPRHQHVASVLRSGGX 21 (26)
T ss_pred cCchHHHHHHHHHcCCc
Confidence 68899999999998765
No 80
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=59.06 E-value=8.5 Score=20.56 Aligned_cols=13 Identities=23% Similarity=-0.005 Sum_probs=11.2
Q ss_pred cccHHHHHHHHhh
Q psy7774 3 SATYQLAASVLRQ 15 (173)
Q Consensus 3 ~~th~~av~~L~~ 15 (173)
++|+|+||++|..
T Consensus 22 ~LtpEDAvEaLi~ 34 (35)
T PF08383_consen 22 GLTPEDAVEALIG 34 (35)
T ss_pred CCCHHHHHHHHhc
Confidence 6899999999864
No 81
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=42.89 E-value=22 Score=24.16 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=24.4
Q ss_pred cCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEE
Q psy7774 129 AGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166 (173)
Q Consensus 129 ~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l 166 (173)
+.+++|+.|+++.|.+. .+.+...++.....+.+
T Consensus 74 a~v~~G~iifEi~~~~~----~~~~~~alk~a~~Klp~ 107 (112)
T cd01433 74 ARVKPGQILFEVRGVPE----EEVAKEALRRAAKKLPI 107 (112)
T ss_pred EEECCCCEEEEEeCcCc----HHHHHHHHHHhhccCCC
Confidence 46889999999999875 46666677665554433
No 82
>PRK09203 rplP 50S ribosomal protein L16; Reviewed
Probab=39.49 E-value=27 Score=24.86 Aligned_cols=36 Identities=33% Similarity=0.373 Sum_probs=24.8
Q ss_pred CCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCe
Q psy7774 123 GSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAKPADK 163 (173)
Q Consensus 123 gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~ 163 (173)
|.+... +.+++|+.|+++.| .+.+.+...++.+...
T Consensus 88 G~~~~~varVk~G~iifEi~~-----~~~~~a~~al~~a~~K 124 (138)
T PRK09203 88 GSPEYWVAVVKPGRILFEIAG-----VSEELAREALRLAAAK 124 (138)
T ss_pred CCCcEEEEEECCCCEEEEEeC-----CCHHHHHHHHHHHhcc
Confidence 444444 56999999999998 3456677777655443
No 83
>KOG1892|consensus
Probab=36.37 E-value=24 Score=33.30 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=27.3
Q ss_pred CCcccHHHHHHHHhhCCCeEEEEEEeCCCccC
Q psy7774 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYH 32 (173)
Q Consensus 1 l~~~th~~av~~L~~~g~~v~L~V~r~~~~~~ 32 (173)
|.+++.|.|..+|.+.|+.|+|-|.+....|.
T Consensus 993 LiGisQErAA~lmtrtg~vV~leVaKqgAiyh 1024 (1629)
T KOG1892|consen 993 LIGISQERAARLMTRTGNVVHLEVAKQGAIYH 1024 (1629)
T ss_pred cccccHHHHHHHHhccCCeEEEehhhhhhHHH
Confidence 56889999999999999999999986665543
No 84
>PHA02823 chemokine binding protein; Provisional
Probab=36.14 E-value=39 Score=25.90 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=23.1
Q ss_pred cccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774 3 SATYQLAASVLRQCGNSITMLVQYSPD 29 (173)
Q Consensus 3 ~~th~~av~~L~~~g~~v~L~V~r~~~ 29 (173)
.++|+||+++++.|.-.|.++...+..
T Consensus 142 sitr~ealal~~~CevsIdiKCs~e~~ 168 (255)
T PHA02823 142 AITREEALAMIKDCEVSIDIKCSEEEK 168 (255)
T ss_pred cccHHHHHHHHhhceeeEEEEeecccc
Confidence 479999999999999999999876543
No 85
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle. This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10
Probab=31.33 E-value=33 Score=24.01 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=23.8
Q ss_pred CCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCC
Q psy7774 123 GSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAKPAD 162 (173)
Q Consensus 123 gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~ 162 (173)
|.+... +.+++|+.|+++.+ .+.+.+..+++....
T Consensus 87 G~~~~~varV~~G~ilfEi~~-----~~~~~a~~al~~a~~ 122 (126)
T TIGR01164 87 GNPEYWVAVVKPGKILFEIAG-----VPEEVAREAFRLAAS 122 (126)
T ss_pred CCCCEEEEEECCCCEEEEEeC-----CCHHHHHHHHHHHHh
Confidence 444444 56999999999988 345667677665443
No 86
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=30.83 E-value=82 Score=23.97 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=32.7
Q ss_pred cCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774 129 AGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT 165 (173)
Q Consensus 129 ~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~ 165 (173)
++...|++++-|+.+-..+.+-.+++..++..|..|.
T Consensus 107 G~~~~G~kVvvVEDViTTG~Si~eai~~l~~~G~~V~ 143 (201)
T COG0461 107 GGEVKGEKVVVVEDVITTGGSILEAVEALREAGAEVV 143 (201)
T ss_pred ecCCCCCEEEEEEecccCCHhHHHHHHHHHHcCCeEE
Confidence 4566899999999999999999999999998888763
No 87
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=30.41 E-value=1.1e+02 Score=22.76 Aligned_cols=36 Identities=17% Similarity=0.246 Sum_probs=32.2
Q ss_pred CCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774 130 GLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT 165 (173)
Q Consensus 130 gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~ 165 (173)
.+..||+++=|+.+-..+-+-.+++.++++.|..|.
T Consensus 118 ~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~ 153 (187)
T PRK13810 118 DLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIK 153 (187)
T ss_pred cCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEE
Confidence 478999999999999999999999999998887653
No 88
>KOG3552|consensus
Probab=29.56 E-value=38 Score=31.84 Aligned_cols=25 Identities=20% Similarity=0.394 Sum_probs=21.9
Q ss_pred CcccHHHHHHHHhhCCCeEEEEEEe
Q psy7774 2 RSATYQLAASVLRQCGNSITMLVQY 26 (173)
Q Consensus 2 ~~~th~~av~~L~~~g~~v~L~V~r 26 (173)
..+..+.|++++|.|.+.|.|+|.+
T Consensus 107 ~daprervIdlvRace~sv~ltV~q 131 (1298)
T KOG3552|consen 107 KDAPRERVIDLVRACESSVNLTVCQ 131 (1298)
T ss_pred ccccHHHHHHHHHHHhhhcceEEec
Confidence 4678899999999999999999876
No 89
>PF07497 Rho_RNA_bind: Rho termination factor, RNA-binding domain; InterPro: IPR011113 The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It is thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers [].; GO: 0003723 RNA binding, 0006353 transcription termination, DNA-dependent; PDB: 1A8V_B 1PVO_A 1PV4_D 3ICE_A 1XPU_C 1XPO_D 1XPR_F 2A8V_B 2HT1_B 1A63_A ....
Probab=27.73 E-value=1.5e+02 Score=18.96 Aligned_cols=34 Identities=29% Similarity=0.311 Sum_probs=19.2
Q ss_pred CcccEEEEc--cC---CCCEEEEEecCCCcccccCCCCCCEEE
Q psy7774 101 SNLGISLVG--GN---AVGIYVHSVQSGSLGYSAGLRTGDRIL 138 (173)
Q Consensus 101 ~~lG~~l~g--g~---~~~i~V~~v~~gs~A~~~gL~~gD~Il 138 (173)
+++||--.. +- ..-+||+. +-..+-+|+.||.|.
T Consensus 12 dGyGFLR~~~~~y~~~~~DvYVs~----~qIrrf~LR~GD~V~ 50 (78)
T PF07497_consen 12 DGYGFLRSPDNNYLPSPDDVYVSP----SQIRRFGLRTGDLVE 50 (78)
T ss_dssp TS-EEEE-GGGTTS-STTSEEE-C----CCCCCTT--TTEEEE
T ss_pred CCcEEeECCCcCCCCCCCCEEECH----HHHHHcCCCCCCEEE
Confidence 688987665 22 34688863 444557899999886
No 90
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=27.21 E-value=89 Score=23.40 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=31.1
Q ss_pred CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeE
Q psy7774 131 LRTGDRILEYNGTDLRAATAEEAAYELAKPADKV 164 (173)
Q Consensus 131 L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v 164 (173)
+..||+++-|+..-..+-+...++.++++.|.++
T Consensus 114 l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~V 147 (191)
T TIGR01744 114 LSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKI 147 (191)
T ss_pred CCCcCEEEEEEehhccChHHHHHHHHHHHCCCEE
Confidence 7899999999999999999999999999888765
No 91
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=25.95 E-value=69 Score=18.71 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=17.0
Q ss_pred CCcccHHHHHHHHhhCCCeEEE
Q psy7774 1 MRSATYQLAASVLRQCGNSITM 22 (173)
Q Consensus 1 l~~~th~~av~~L~~~g~~v~L 22 (173)
|.+.+-++|.+.|++.|=.+..
T Consensus 6 ~~g~~~~~a~~~l~~~g~~~~~ 27 (63)
T PF03793_consen 6 LVGMTYDEAKSILEAAGLTVNV 27 (63)
T ss_dssp TTTSBHHHHHHHHHHTT-EEEE
T ss_pred cCCCcHHHHHHHHHHCCCEEEE
Confidence 5789999999999998853333
No 92
>CHL00044 rpl16 ribosomal protein L16
Probab=25.31 E-value=40 Score=23.87 Aligned_cols=37 Identities=27% Similarity=0.276 Sum_probs=24.2
Q ss_pred CCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeE
Q psy7774 123 GSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKV 164 (173)
Q Consensus 123 gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v 164 (173)
|.+... +.+++|+.|+++.|.+- +.+..+++.....+
T Consensus 88 G~~~~~va~V~~G~ilfEi~g~~~-----~~ak~al~~a~~KL 125 (135)
T CHL00044 88 GSPEYWVAVVKPGRILYEMGGVSE-----TIARAAIKIAAYKM 125 (135)
T ss_pred CCccEEEEEECCCcEEEEEeCCCH-----HHHHHHHHHHhhcC
Confidence 444444 46999999999998543 55666666544433
No 93
>COG5233 GRH1 Peripheral Golgi membrane protein [Intracellular trafficking and secretion]
Probab=25.27 E-value=42 Score=27.54 Aligned_cols=30 Identities=37% Similarity=0.359 Sum_probs=26.3
Q ss_pred EEEEecCCCcccccCCCCCCEEEEECCEec
Q psy7774 116 YVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145 (173)
Q Consensus 116 ~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~ 145 (173)
-+-+|.+.++|+.+|.-.||-|+-+|+..+
T Consensus 66 ~~lrv~~~~~~e~~~~~~~dyilg~n~Dp~ 95 (417)
T COG5233 66 EVLRVNPESPAEKAGMVVGDYILGINEDPL 95 (417)
T ss_pred hheeccccChhHhhccccceeEEeecCCcH
Confidence 466788999999999999999999998655
No 94
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=25.22 E-value=93 Score=23.25 Aligned_cols=35 Identities=23% Similarity=0.164 Sum_probs=31.5
Q ss_pred CCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeE
Q psy7774 130 GLRTGDRILEYNGTDLRAATAEEAAYELAKPADKV 164 (173)
Q Consensus 130 gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v 164 (173)
.+..||+++=|+..-..+-+...++.++++.|..+
T Consensus 113 ~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~v 147 (189)
T PRK09219 113 FLSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKV 147 (189)
T ss_pred hCCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEE
Confidence 47899999999999999999999999999888765
No 95
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=25.21 E-value=64 Score=27.35 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=25.6
Q ss_pred EEEEecCCCcccccCCCCCCEEEEEC-CEecCCC
Q psy7774 116 YVHSVQSGSLGYSAGLRTGDRILEYN-GTDLRAA 148 (173)
Q Consensus 116 ~V~~v~~gs~A~~~gL~~gD~Il~Vn-g~~~~~~ 148 (173)
.|..+.+++.++..|...||-++.|| |...+++
T Consensus 4 ~i~~v~~~~~~d~~Gfe~~~~l~~Vn~~~~~~~c 37 (414)
T COG1625 4 KISKVGGISGADCDGFEEGDYLLKVNPGFGCKDC 37 (414)
T ss_pred ceeeccCCCcccccCccccceeeecCCCCCCCcC
Confidence 46677788888888899999999998 6555444
No 96
>PRK15464 cold shock-like protein CspH; Provisional
Probab=25.01 E-value=1.8e+02 Score=18.00 Aligned_cols=43 Identities=21% Similarity=0.166 Sum_probs=25.4
Q ss_pred EEEEccCCCcccEEEEccCCCCEEEEE--ecCCCcccccCCCCCCEEEE
Q psy7774 93 LMIETRKCSNLGISLVGGNAVGIYVHS--VQSGSLGYSAGLRTGDRILE 139 (173)
Q Consensus 93 v~l~~~~~~~lG~~l~gg~~~~i~V~~--v~~gs~A~~~gL~~gD~Il~ 139 (173)
|.-+... .||||........-|||+. +...+ ...|+.||.+.-
T Consensus 9 Vk~fn~~-KGfGFI~~~~g~~DvFvH~s~l~~~g---~~~l~~G~~V~f 53 (70)
T PRK15464 9 VKTFDRK-SGKGFIIPSDGRKEVQVHISAFTPRD---AEVLIPGLRVEF 53 (70)
T ss_pred EEEEECC-CCeEEEccCCCCccEEEEehhehhcC---CCCCCCCCEEEE
Confidence 4445544 8999976544344678664 22221 235899998754
No 97
>KOG3571|consensus
Probab=23.80 E-value=73 Score=27.87 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=21.1
Q ss_pred CCcccHHHHHHHHhhC---CCeEEEEEEe
Q psy7774 1 MRSATYQLAASVLRQC---GNSITMLVQY 26 (173)
Q Consensus 1 l~~~th~~av~~L~~~---g~~v~L~V~r 26 (173)
+.|++.+|||.+||.+ ...++|+|..
T Consensus 310 FENmSNd~AVrvLREaV~~~gPi~ltvAk 338 (626)
T KOG3571|consen 310 FENMSNDQAVRVLREAVSRPGPIKLTVAK 338 (626)
T ss_pred hhhcCchHHHHHHHHHhccCCCeEEEEee
Confidence 4689999999999995 3448999864
No 98
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=23.12 E-value=1.8e+02 Score=20.56 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=26.2
Q ss_pred cCCCCCCEEEEECCEec-CCCCHHHHHHHHhCCCCeEEE
Q psy7774 129 AGLRTGDRILEYNGTDL-RAATAEEAAYELAKPADKVTV 166 (173)
Q Consensus 129 ~gL~~gD~Il~Vng~~~-~~~~~~~~~~~l~~~g~~v~l 166 (173)
..++.||.|+. |.+. .+.+++.|+..++..|=...+
T Consensus 41 ~~v~~gdilVa--G~nFG~GSSRE~A~~al~~~Gi~~VI 77 (129)
T cd01674 41 TKTKQGDILVS--GFNFGTGSSREQAATALLAKGIPLVV 77 (129)
T ss_pred hcCCCCCEEEe--CCccCCCCcHHHHHHHHHHcCccEEE
Confidence 34778898865 5555 467899999999988766443
No 99
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
Probab=22.55 E-value=46 Score=23.96 Aligned_cols=36 Identities=25% Similarity=0.238 Sum_probs=24.3
Q ss_pred CCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCe
Q psy7774 123 GSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAKPADK 163 (173)
Q Consensus 123 gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~ 163 (173)
|.|-.. +.+++|+.|++|.|.+-. .|...|+.++.+
T Consensus 91 G~pegwaArVkpG~vlfei~g~~e~-----~A~EAlr~Aa~K 127 (146)
T COG0197 91 GKPEGWAARVKPGRVLFEIAGVPEE-----LAREALRRAAAK 127 (146)
T ss_pred CCccEEEEEecCCcEEEEEecCcHH-----HHHHHHHHHhhc
Confidence 555555 569999999999997653 355666554433
No 100
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed
Probab=21.55 E-value=1.3e+02 Score=22.36 Aligned_cols=35 Identities=20% Similarity=0.184 Sum_probs=22.5
Q ss_pred CCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHHhCC
Q psy7774 123 GSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAKP 160 (173)
Q Consensus 123 gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~ 160 (173)
|.+... +.+++|+.|++|.+... +.+.+...|+..
T Consensus 117 G~p~~wva~Vk~G~ilfei~~~~~---~~~~akeAlr~a 152 (172)
T PRK04199 117 GKPVGTAARVEKGQKIFTVRVNPE---HLEAAKEALRRA 152 (172)
T ss_pred CCccEEEEEECcCCEEEEEEecCC---CHHHHHHHHHHh
Confidence 344444 56899999999987543 345555666544
No 101
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=20.68 E-value=2.3e+02 Score=17.69 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=25.2
Q ss_pred EEEEccCCCcccEEEEccCCCCEEEEE--ecCCCcccccCCCCCCEEEE
Q psy7774 93 LMIETRKCSNLGISLVGGNAVGIYVHS--VQSGSLGYSAGLRTGDRILE 139 (173)
Q Consensus 93 v~l~~~~~~~lG~~l~gg~~~~i~V~~--v~~gs~A~~~gL~~gD~Il~ 139 (173)
|.-+... .||||....+...-||++. +...+ ...|+.||.+.-
T Consensus 6 Vkwfn~~-KGfGFI~~~~gg~dVFvH~s~i~~~g---~~~l~~G~~V~f 50 (74)
T PRK09937 6 VKWFNNA-KGFGFICPEGGGEDIFAHYSTIQMDG---YRTLKAGQSVQF 50 (74)
T ss_pred EEEEeCC-CCeEEEeeCCCCccEEEEEeeccccC---CCCCCCCCEEEE
Confidence 4444444 8999986544445677763 22221 135899997753
Done!