RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7774
(173 letters)
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 97.2 bits (242), Expect = 8e-27
Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
Query: 66 KSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSL 125
H++S T + P +++ RK ++G+ L GGN VGI+V V S
Sbjct: 4 SHHHHHHSSGGTENLYFQGHMILRPSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSP 63
Query: 126 GYSAGLRTGDRILEYNGTDLRAATAEEAAYEL--AKPADKVTVLAHSD 171
GL GD+IL N D EEA L ++VT+LA
Sbjct: 64 AAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKK 111
Score = 32.5 bits (74), Expect = 0.021
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 1 MRSATYQLAASVLRQC--GNSITMLVQYSPDKYHELEGSG 38
+ + A L G +T+L Q D Y + S
Sbjct: 83 FTNIIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESD 122
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight
junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A
3lh5_A
Length = 391
Score = 91.0 bits (225), Expect = 3e-22
Identities = 27/83 (32%), Positives = 35/83 (42%)
Query: 84 DERSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGT 143
P +++ RK ++G+ L GGN VGI+V V S GL GD+IL N
Sbjct: 2 SHMILRPSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNV 61
Query: 144 DLRAATAEEAAYELAKPADKVTV 166
D EEA L V
Sbjct: 62 DFTNIIREEAVLFLLDLPKGEEV 84
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 90.0 bits (222), Expect = 1e-21
Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 5/175 (2%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENES--VSGRGSGSPTPC 58
+ ++ A + L+ + + + V + Y + + S + S S
Sbjct: 217 LEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLG 276
Query: 59 NSPGTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGG-NAVGIYV 117
T + S + + + +++ EPR ++I R + LG ++VGG + GI++
Sbjct: 277 TDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIVIH-RGSTGLGFNIVGGEDGEGIFI 335
Query: 118 HSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSD 171
+ +G +G LR GD+IL NG DLR A+ E+AA L VT++A
Sbjct: 336 SFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK 390
Score = 66.9 bits (162), Expect = 1e-13
Identities = 28/137 (20%), Positives = 42/137 (30%), Gaps = 8/137 (5%)
Query: 39 SSSAENESVSGRGSGSPTPCNSPGTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETR 98
++ +P + P + NT TL + R
Sbjct: 8 TAKKYRYQDEDTPPLKHSPAHLPNQANSPPVIVNTDTLEAPGYVNGTEGEMEYEEITLER 67
Query: 99 KCSNLGISLVGG-------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATA 150
S LG S+ GG + I++ + G G LR D IL N D+R T
Sbjct: 68 GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH 127
Query: 151 EEAAYELAKPADKVTVL 167
A L + V +
Sbjct: 128 SAAVEALKEAGSIVRLY 144
Score = 40.3 bits (93), Expect = 1e-04
Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 8/104 (7%)
Query: 78 RTHVCKDERSGEPRFLMIETRKCSNLGISLVGG-------NAVGIYVHSVQSGSLGYSAG 130
R +V + + E + + LG S+ GG IYV + G + G
Sbjct: 142 RLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDG 201
Query: 131 -LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDTN 173
L+ GD+IL N L E+A L D V + +N
Sbjct: 202 RLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSN 245
Score = 36.4 bits (83), Expect = 0.003
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGSPTPCNS 60
+R+A+++ AA L+ G ++T++ QY P++Y E E S GSG+ + ++
Sbjct: 364 LRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAKIHDLREQLMNSSLGSGTASLRSN 423
Query: 61 P 61
P
Sbjct: 424 P 424
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 79.7 bits (197), Expect = 3e-20
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 83 KDERSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEY 140
+ PR + ++ + LG ++ GG + +GI++ V S + AGL+ GD++L
Sbjct: 9 NELTQFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAV 68
Query: 141 NGTDLRAATAEEAAYELAKPADKVTVL 167
N D + +A E+ K A ++++
Sbjct: 69 NDVDFQDIEHSKAV-EILKTAREISMR 94
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 79.1 bits (195), Expect = 8e-20
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 87 SGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLR 146
EPR + ++ + LGIS+V G GIYV V GS+ + AGL GD++LE+NG +LR
Sbjct: 17 VEEPRHVKVQ-KGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLR 75
Query: 147 AATAEEAAYELAKPADKVTVLAHSD 171
+AT ++A + + D +T+LA +
Sbjct: 76 SATEQQARLIIGQQCDTITILAQYN 100
Score = 46.7 bits (111), Expect = 2e-07
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSS 41
+RSAT Q A ++ Q ++IT+L QY+P + S S
Sbjct: 74 LRSATEQQARLIIGQQCDTITILAQYNPHVHQLSSHSRSGP 114
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 83.0 bits (204), Expect = 3e-19
Identities = 26/74 (35%), Positives = 34/74 (45%)
Query: 94 MIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEA 153
+++ RK ++G+ L GGN VGI+V V S GL GD+IL N D EEA
Sbjct: 4 LVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEA 63
Query: 154 AYELAKPADKVTVL 167
L V
Sbjct: 64 VLFLLDLPKGEEVT 77
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 75.2 bits (185), Expect = 3e-18
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 86 RSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGT 143
R + + + I LG S+ G GI++ V+ GSL GL GD+I+E NG
Sbjct: 12 RENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGV 71
Query: 144 DLRAATAEEAAYELAKPADKVTVL 167
D +EA + K + +T+
Sbjct: 72 DFSNLDHKEAV-NVLKSSRSLTIS 94
Score = 27.1 bits (60), Expect = 1.9
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSS 41
+ ++ A +VL+ + +V + + + SG SS
Sbjct: 73 FSNLDHKEAVNVLKSSRSLTISIVAAAGRELFMTDRSGPSS 113
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 73.9 bits (182), Expect = 5e-18
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 84 DERSGEPRFLMIETRKCSNLGISLVGGNA-VGIYVHSVQSGSLGYSAG-LRTGDRILEYN 141
++ EPR ++I R + LG ++VGG GI++ + +G +G LR GD+IL N
Sbjct: 6 EDIPREPRRIVIH-RGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVN 64
Query: 142 GTDLRAATAEEAAYELAKPADKVTVLA 168
G DLR A+ E+AA L VT++A
Sbjct: 65 GVDLRNASHEQAAIALKNAGQTVTIIA 91
Score = 48.5 bits (116), Expect = 3e-08
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEG 36
+R+A+++ AA L+ G ++T++ QY P++Y E
Sbjct: 68 LRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEA 103
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 72.1 bits (177), Expect = 4e-17
Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 83 KDERSGEPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEY 140
+++ EPR ++I R + LG ++VGG + GI++ + +G +G LR GD+IL
Sbjct: 8 EEDIPREPRRIVIH-RGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSV 66
Query: 141 NGTDLRAATAEEAAYELAKPADKVTVLA 168
NG DLR A+ E+AA L VT++A
Sbjct: 67 NGVDLRNASHEQAAIALKNAGQTVTIIA 94
Score = 49.7 bits (119), Expect = 1e-08
Identities = 13/48 (27%), Positives = 28/48 (58%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVS 48
+R+A+++ AA L+ G ++T++ QY P++Y E + + V+
Sbjct: 71 LRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVDSSGRIVT 118
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 71.4 bits (175), Expect = 2e-16
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 89 EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAA 148
+PR +++ + +G+ L + GI+V VQ+ S GLR GD++L+ NG +
Sbjct: 4 DPREVILCKDQDGKIGLRLKSIDN-GIFVQLVQANSPASLVGLRFGDQVLQINGENCAGW 62
Query: 149 TAEEAAYELAKPADKVTVL 167
++++A L + + +
Sbjct: 63 SSDKAHKVLKQAFGEKITM 81
Score = 45.2 bits (107), Expect = 1e-06
Identities = 15/60 (25%), Positives = 22/60 (36%)
Query: 108 VGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
VG + S+ S GL T I E NG ++ + A L+ VT+
Sbjct: 102 VGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT 161
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 68.9 bits (169), Expect = 4e-16
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 87 SGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTD 144
S + +E LG S+ GG + +GI+V V+ GS AGL GD+I E NG
Sbjct: 8 SDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLS 67
Query: 145 LRAATAEEAAYELAKPADKVTVL 167
L + T A ++ + ++ ++
Sbjct: 68 LESTTMGSAV-KVLTSSSRLHMM 89
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 68.5 bits (168), Expect = 5e-16
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 86 RSGEPRFLMIETRKCSNLGISLVGG-----------NAVGIYVHSVQSGSLGYSAG-LRT 133
+S +PR + + +LGIS+VGG GI++ V S G L+
Sbjct: 1 QSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKP 60
Query: 134 GDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDTN 173
GDRI+E +G DLR A+ E+A + K + V + S +
Sbjct: 61 GDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS 100
Score = 30.4 bits (69), Expect = 0.092
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQY 26
+R A+++ A +R+ GN + +VQ
Sbjct: 72 LRDASHEQAVEAIRKAGNPVVFMVQS 97
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 68.3 bits (167), Expect = 1e-15
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 12/96 (12%)
Query: 84 DERSGEPRFLMIETRKCSNLGISLVGG-----------NAVGIYVHSVQSGSLGYSAG-L 131
G PR + I +LGIS+VGG GI++ V S L
Sbjct: 10 FSHWGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNAL 69
Query: 132 RTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
+TGD+ILE +G DL+ A+ EA + + V +
Sbjct: 70 KTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFI 105
Score = 31.7 bits (72), Expect = 0.044
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPD 29
+++A++ A ++ GN + +VQ
Sbjct: 83 LQNASHSEAVEAIKNAGNPVVFIVQSLSS 111
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 68.3 bits (167), Expect = 1e-15
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 68 SIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGG-----------NAVGIY 116
H++S + +S +PR + + +LGIS+VGG GI+
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIF 62
Query: 117 VHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDTN 173
+ V S G L+ GDRI+E +G DLR A+ E+A + K + V + S +
Sbjct: 63 IKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS 120
Score = 30.9 bits (70), Expect = 0.093
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQY 26
+R A+++ A +R+ GN + +VQ
Sbjct: 92 LRDASHEQAVEAIRKAGNPVVFMVQS 117
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 65.8 bits (161), Expect = 6e-15
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 87 SGEPRFLMIE-TRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGT 143
SGE R + + + LG S+ GG + VGIYV V+ GSL GLR GD+IL N
Sbjct: 6 SGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDK 65
Query: 144 DLRAATAEEAAYELAKPADKVTVL 167
L T EA + K + K+ +
Sbjct: 66 SLARVTHAEAV-KALKGSKKLVLS 88
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 65.9 bits (161), Expect = 8e-15
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 84 DERSGEPRFLMIETRKCSNLGISLVGGNA-VGIYVHSVQSGSLGYSAGLRTGDRILEYNG 142
SG+PR + ++ + G SL G+Y+ + + AG+ D ++E NG
Sbjct: 3 SGSSGQPRLCYLV-KEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNG 61
Query: 143 TDLRAATAEEAAYELAKPADKVTVL 167
++ A+ EE ++ K +V L
Sbjct: 62 ENVEDASHEEVVEKVKKSGSRVMFL 86
Score = 33.9 bits (78), Expect = 0.005
Identities = 10/43 (23%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSP-DKYHELEGSGSSSA 42
+ A+++ +++ G+ + L+ DK H + SG SS
Sbjct: 64 VEDASHEEVVEKVKKSGSRVMFLLVDKETDKRHVEQKSGPSSG 106
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 113
Score = 65.5 bits (160), Expect = 1e-14
Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 87 SGEPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTD 144
+ EPR +++ + + LG ++VGG + GI+V + +G +G LR GDRIL NG +
Sbjct: 13 AREPRKIILH-KGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVN 71
Query: 145 LRAATAEEAAYELAKPADKVTVLA 168
LR AT E+AA L + VT++A
Sbjct: 72 LRNATHEQAAAALKRAGQSVTIVA 95
Score = 50.4 bits (121), Expect = 5e-09
Identities = 18/42 (42%), Positives = 30/42 (71%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSA 42
+R+AT++ AA+ L++ G S+T++ QY P++Y E SG SS
Sbjct: 72 LRNATHEQAAAALKRAGQSVTIVAQYRPEEYSRFESSGPSSG 113
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 64.7 bits (158), Expect = 2e-14
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 84 DERSGEPRFLMIETRKCSNLGISLVGG-----NAVGIYVHSVQSGSLGYSAG-LRTGDRI 137
EP + + +K + +G+S+V + +GIYV SV G G L GD++
Sbjct: 4 GSDHKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQL 63
Query: 138 LEYNGTDLRAATAEEAAYELAKPADKVTVL 167
L +G L + E AA + + + VT+
Sbjct: 64 LSVDGRSLVGLSQERAAELMTRTSSVVTLE 93
Score = 30.4 bits (69), Expect = 0.10
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHE 33
+ + + AA ++ + + +T+ V E
Sbjct: 71 LVGLSQERAAELMTRTSSVVTLEVAKQGAIRRE 103
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 65.2 bits (159), Expect = 2e-14
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 74 STLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAGL 131
S+ R + G+ + + + +LG+++ GG +GIY+ V GS +GL
Sbjct: 5 SSGDRRSTLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGL 64
Query: 132 RTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
+ GD+ILE NG +EA L K + + +
Sbjct: 65 KVGDQILEVNGRSFLNILHDEAV-RLLKSSRHLILT 99
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 65.0 bits (158), Expect = 1e-13
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 86 RSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGT 143
RS + + + ++ LG+S+ GG G+++ + G S GL+ GD I+ NG
Sbjct: 81 RSRKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGY 140
Query: 144 DLRAATAEEAAYELAKPADKVTVL 167
+ + T EE L + V++
Sbjct: 141 SISSCTHEEVI-NLIRTEKTVSIK 163
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform
B; GOPC PDZ domain, structural protein; NMR {Homo
sapiens}
Length = 103
Score = 62.4 bits (152), Expect = 1e-13
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 83 KDERSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILE 139
K + G R +++ LGIS+ GG + V I + + G G L GD IL
Sbjct: 3 KSQGVGPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILA 62
Query: 140 YNGTDLRAATAEEAAYELAKPADKVT 165
NG +LR +EA L++ ++
Sbjct: 63 VNGVNLRDTKHKEAVTILSQQRGEIE 88
Score = 34.2 bits (79), Expect = 0.004
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELE 35
+R ++ A ++L Q I V Y ++H
Sbjct: 68 LRDTKHKEAVTILSQQRGEIEFEVVYVALEHHHHH 102
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 62.0 bits (151), Expect = 2e-13
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 103 LGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPA 161
G S+ G G+YV +++ G GL+ DR+L+ N R +A+
Sbjct: 21 FGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESG 80
Query: 162 DKVTVL 167
+K+ ++
Sbjct: 81 NKLDLV 86
Score = 35.4 bits (82), Expect = 0.001
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSP 28
R L ++ + GN + +++ +P
Sbjct: 64 TRDFDCCLVVPLIAESGNKLDLVISRNP 91
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Length = 91
Score = 61.9 bits (151), Expect = 2e-13
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 90 PRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAA 148
PR +E + + G L G +G Y+ V+ GS AGL GDR++E NG ++
Sbjct: 4 PRLCCLE-KGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKE 62
Query: 149 TAEEAAYELAKPADKVTVL 167
T ++ + + V +L
Sbjct: 63 THQQVVSRIRAALNAVRLL 81
Score = 28.4 bits (64), Expect = 0.38
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHEL 34
+ T+Q S +R N++ +LV P+ +L
Sbjct: 59 VEKETHQQVVSRIRAALNAVRLLVV-DPETDEQL 91
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 61.5 bits (150), Expect = 3e-13
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 103 LGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP 160
LGI LV + G+++ + G L G L + DR+L NG DL+ T E AA +
Sbjct: 18 LGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQAS 77
Query: 161 ADKVTVL 167
++V +
Sbjct: 78 GERVNLT 84
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 61.1 bits (149), Expect = 3e-13
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 103 LGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP 160
LG+S+VG N G++V + G + + G L GD+IL NG D+R AT E A L
Sbjct: 18 LGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCS 77
Query: 161 ADKVT 165
VT
Sbjct: 78 LGTVT 82
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus musculus}
SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 61.1 bits (149), Expect = 3e-13
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 87 SGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGT 143
S + R + + LGIS+ GG N + I + + G L GD IL NG
Sbjct: 2 SLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGE 61
Query: 144 DLRAATAEEAAYELAKPADKVTVL 167
DL +AT +EA L K +V +
Sbjct: 62 DLSSATHDEAVQALKKTGKEVVLE 85
Score = 28.8 bits (65), Expect = 0.27
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQY 26
+ SAT+ A L++ G + + V+Y
Sbjct: 63 LSSATHDEAVQALKKTGKEVVLEVKY 88
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 61.2 bits (149), Expect = 4e-13
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 9/93 (9%)
Query: 84 DERSGEPRFLMIETRKCSN-LGISLVGG--------NAVGIYVHSVQSGSLGYSAGLRTG 134
+ E L + + + LGIS+ GG + GI++ V AG+R G
Sbjct: 8 EPARIEEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVG 67
Query: 135 DRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
D++LE NG L+ A EA L V +
Sbjct: 68 DKLLEVNGVALQGAEHHEAVEALRGAGTAVQMR 100
Score = 28.5 bits (64), Expect = 0.49
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYH 32
++ A + A LR G ++ M V
Sbjct: 78 LQGAEHHEAVEALRGAGTAVQMRVWRESGPSS 109
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 61.2 bits (149), Expect = 4e-13
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 85 ERSGEPRFLMIETRKCSN-LGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNG 142
E +E + LG +VGG G+ V ++ G L G L+TGD IL+ G
Sbjct: 9 ETVCWGHVEEVELINDGSGLGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGG 68
Query: 143 TDLRAATAEEAAYELAKPADKVTVL 167
T+++ T+E+ A L + V +L
Sbjct: 69 TNVQGMTSEQVAQVLRNCGNSVRML 93
Score = 37.4 bits (87), Expect = 4e-04
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSS 40
++ T + A VLR CGNS+ MLV P + SS
Sbjct: 71 VQGMTSEQVAQVLRNCGNSVRMLVARDPAGDISVTSGPSS 110
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 63.2 bits (154), Expect = 5e-13
Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
Query: 84 DERSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEY 140
+ + ++ + LG+++ GG V +++ G + + L GD I
Sbjct: 2 PGSFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAV 61
Query: 141 NGTDLRAATAEEAAYELAKPADKVTVL 167
NG +L +E L ++V +
Sbjct: 62 NGINLAKFRHDEIISLLKNVGERVVLE 88
Score = 56.3 bits (136), Expect = 2e-10
Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 8/98 (8%)
Query: 78 RTHVCKDERSGEPRFLMIETRKCSN-LGISLVGG------NAVGIYVHSVQSGSLGYSAG 130
V S R + + K N G + GG + + + V+ G G
Sbjct: 93 LPPVSIQGSSVMFRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREG 152
Query: 131 -LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
++ GDR+L +G L T EA L + + T+L
Sbjct: 153 TIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLL 190
Score = 30.1 bits (68), Expect = 0.26
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSP 28
+ T+ A S+L+QCG T+L++Y
Sbjct: 168 LLGTTHAEAMSILKQCGQEATLLIEYDV 195
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation,
leucine-rich repeat, alternative splicing, cytoplasm,
circletail, coiled coil; 1.30A {Homo sapiens}
Length = 97
Score = 60.8 bits (148), Expect = 5e-13
Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 87 SGEPRFLMIETRKCSNLGISLVGG--------NAVGIYVHSVQSGSLGYSAGLRTGDRIL 138
S E L I R+ LGIS+ GG + GI++ V AG+R GD++L
Sbjct: 1 SMEELTLTIL-RQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLL 59
Query: 139 EYNGTDLRAATAEEAAYELAKPADKVTVL 167
E NG L+ A EA L V +
Sbjct: 60 EVNGVALQGAEHHEAVEALRGAGTAVQMR 88
Score = 30.7 bits (70), Expect = 0.064
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDK 30
++ A + A LR G ++ M V +
Sbjct: 66 LQGAEHHEAVEALRGAGTAVQMRVWRERET 95
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 60.1 bits (146), Expect = 9e-13
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 93 LMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEE 152
+ K + G ++ GI+V SV++GS + L+ D I+ N T ++E
Sbjct: 9 INQTPGKSLDFGFTIKWDIP-GIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKE 67
Query: 153 AAYELAKPADKVTVL 167
+AK + ++
Sbjct: 68 WEEAMAKAQETGHLV 82
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 60.5 bits (147), Expect = 9e-13
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 67 SSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGS 124
H++ + H+ ++ R +++ LGIS+ GG + V I + + G
Sbjct: 6 HHHHHSSGHIEGRHM-ENLYFQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQ 64
Query: 125 LGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT 165
G L GD IL NG +LR +EA L++ ++
Sbjct: 65 PADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIE 106
Score = 28.6 bits (64), Expect = 0.43
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQY 26
+R ++ A ++L Q I V Y
Sbjct: 86 LRDTKHKEAVTILSQQRGEIEFEVVY 111
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 61.0 bits (148), Expect = 9e-13
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 84 DERSGEPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNG 142
PR ++ + S G +L + G ++ SV S ++GLR DRI+E NG
Sbjct: 4 PFTMLRPRLCTMK-KGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNG 62
Query: 143 TDLRAATAEEAAYELAKPADKVTVL 167
+ + + D+ +L
Sbjct: 63 VCMEGKQHGDVVSAIRAGGDETKLL 87
Score = 34.1 bits (78), Expect = 0.007
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 5/68 (7%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGSPTPCNS 60
M + S +R G+ +LV + S E+ + P P +
Sbjct: 65 MEGKQHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPSQEHLNGP-----LPVPFTN 119
Query: 61 PGTNRKSS 68
+++S
Sbjct: 120 GEIQKENS 127
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 93
Score = 59.9 bits (146), Expect = 9e-13
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 87 SGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGT 143
SG + + + LG +++GG IY+ V G + G L+ GD++L NG
Sbjct: 3 SGSSGVVELP-KTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGV 61
Query: 144 DLRAATAEEAAYELAKPADKVTVLAHSD 171
+ E+A L V ++ S
Sbjct: 62 SVEGEQHEKAVELLKAAQGSVKLVVRSG 89
Score = 30.7 bits (70), Expect = 0.077
Identities = 5/28 (17%), Positives = 14/28 (50%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSP 28
+ ++ A +L+ S+ ++V+ P
Sbjct: 63 VEGEQHEKAVELLKAAQGSVKLVVRSGP 90
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 59.9 bits (146), Expect = 1e-12
Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 89 EPRFLMIETRKCSN-LGISLVGG-----NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYN 141
+E K N LGIS+ GG GIYV +V S G + GDR+L N
Sbjct: 3 PGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVN 62
Query: 142 GTDLRAATAEEAAYELAKPADKVTVL 167
G L AT ++A L V +L
Sbjct: 63 GVSLEGATHKQAVETLRNTGQVVHLL 88
Score = 26.8 bits (60), Expect = 1.6
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPD 29
+ AT++ A LR G + +L++
Sbjct: 66 LEGATHKQAVETLRNTGQVVHLLLEKGQS 94
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 59.6 bits (145), Expect = 1e-12
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 87 SGEPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
S +P+ + + + G L G ++ VQ G AGL D I+E NG ++
Sbjct: 1 SMKPKLCRLA-KGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNV 59
Query: 146 RAATAEEAAYELAKPADKVTVL 167
E+ + VT+L
Sbjct: 60 LDEPYEKVVDRIQSSGKNVTLL 81
Score = 26.1 bits (58), Expect = 2.6
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 1 MRSATYQLAASVLRQCGNSITMLV 24
+ Y+ ++ G ++T+LV
Sbjct: 59 VLDEPYEKVVDRIQSSGKNVTLLV 82
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel
3 chimera; PDZ domain, PDZ binding, GIRK3 regulation,
early endosomes; 1.68A {Rattus norvegicus} PDB: 3qdo_A
3qgl_A
Length = 107
Score = 60.1 bits (146), Expect = 1e-12
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 15/94 (15%)
Query: 88 GEPRFLMIETRKCSNLGISLVGG--------------NAVGIYVHSVQSGSLGYSAGLRT 133
G PR + I + S G ++ G A +V +V G AG+R
Sbjct: 5 GSPRVVRIV-KSESGYGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLPGGAADRAGVRK 63
Query: 134 GDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
GDRILE NG ++ AT ++ + ++ +
Sbjct: 64 GDRILEVNGVNVEGATHKQVVDLIRAGEKELILT 97
Score = 28.1 bits (63), Expect = 0.74
Identities = 5/34 (14%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHEL 34
+ AT++ ++R + + V S + ++
Sbjct: 75 VEGATHKQVVDLIRAGEKELILTVL-SVESESKV 107
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction,
membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 59.3 bits (144), Expect = 2e-12
Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 88 GEPRFLMIE-TRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL 145
+P + + + K G+ L I+V + SL G ++ GD +L+ NGT
Sbjct: 1 AKPTKVTLVKSAKNEEYGLRLASH----IFVKEISQDSLAARDGNIQEGDVVLKINGTVT 56
Query: 146 RAATAEEAAYELAKPADKVTVL 167
+ +A + + K+ ++
Sbjct: 57 ENMSLTDAKTLIERSKGKLKMV 78
Score = 27.4 bits (61), Expect = 1.2
Identities = 4/28 (14%), Positives = 12/28 (42%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSP 28
+ + A +++ + + M+VQ
Sbjct: 56 TENMSLTDAKTLIERSKGKLKMVVQRDE 83
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 61.7 bits (150), Expect = 2e-12
Identities = 21/115 (18%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Query: 66 KSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSN--LGISLVGG----NAVGIYVHS 119
+ S + TL + ++ K + LGI++ + +
Sbjct: 82 RDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISD 141
Query: 120 VQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDTN 173
++ GS+ + G L GD++L + L + + E+A L + D V + D +
Sbjct: 142 IKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKDED 196
Score = 55.5 bits (134), Expect = 3e-10
Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 7/87 (8%)
Query: 88 GEPRFLMIETRKCSNLGISLVGGNA------VGIYVHSVQSGSLGYSAG-LRTGDRILEY 140
E +++ + GI L G + +++ S G L+ GDR++
Sbjct: 5 TETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAI 64
Query: 141 NGTDLRAATAEEAAYELAKPADKVTVL 167
NG +T EEA L + V
Sbjct: 65 NGIPTEDSTFEEANQLLRDSSITSKVT 91
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 59.8 bits (145), Expect = 2e-12
Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 71 HNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYS 128
H++S + +S P + ++ + +GIS+ GG +Y+ V +
Sbjct: 6 HHSSGVDLGTENLYFQSMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAAL 65
Query: 129 AG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166
G + GD I NG ++ T E A + + +VT+
Sbjct: 66 DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 104
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 60.7 bits (147), Expect = 2e-12
Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 15/157 (9%)
Query: 25 QYSPDKYHELEGSGSSSAENESVSGRGSGSPTPCNSPGT----NRKSSIQHNTSTLTRTH 80
Y P+ +E G S E+ + S + S P T + +
Sbjct: 11 PYEPE-SGCVEIPGLSEEEDPAPSRKIHFSTAPIQVFSTYSNEDYDRRNEDVDPMAASAE 69
Query: 81 VCKDERSGEPRFLMIETRKCSN-LGISLVGG--------NAVGIYVHSVQSGSLGYSAG- 130
++R +E K S LGIS++G +GI+V +V G + G
Sbjct: 70 YELEKRVERLELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGR 129
Query: 131 LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
++ D ++E +GT L T AA L +V +
Sbjct: 130 IQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFM 166
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 58.5 bits (142), Expect = 4e-12
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 84 DERSGEPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNG 142
PR ++ + S G +L + G ++ SV S ++GLR DRI+E NG
Sbjct: 4 PFTMLRPRLCTMK-KGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNG 62
Query: 143 TDLRAATAEEAAYELAKPADKVTVL 167
+ + + D+ +L
Sbjct: 63 VCMEGKQHGDVVSAIRAGGDETKLL 87
Score = 28.8 bits (65), Expect = 0.37
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYS-PDKYHE 33
M + S +R G+ +LV D++ +
Sbjct: 65 MEGKQHGDVVSAIRAGGDETKLLVVDRETDEFFK 98
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 58.6 bits (142), Expect = 5e-12
Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 71 HNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGG-----NAVGIYVHSVQSGSL 125
H++S + +S + + I+ +LG+++ GG + IYV SV+ G +
Sbjct: 6 HHSSGVDLGTENLYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGV 65
Query: 126 GYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
G ++TGD +L +G +L + EA L + + + +
Sbjct: 66 ISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLK 108
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 58.1 bits (141), Expect = 5e-12
Identities = 30/78 (38%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 95 IETRKCSN-LGISLVGG---NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAAT 149
IE K LG+S+VGG I +H V G L GD+ILE NG DLR AT
Sbjct: 8 IEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKAT 67
Query: 150 AEEAAYELAKPADKVTVL 167
+EA L + +V +
Sbjct: 68 HDEAINVLRQTPQRVRLT 85
Score = 31.5 bits (72), Expect = 0.042
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELE 35
+R AT+ A +VLRQ + + + Y
Sbjct: 63 LRKATHDEAINVLRQTPQRVRLTLYRDEAPYKSTR 97
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 58.6 bits (142), Expect = 6e-12
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 87 SGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGT 143
P + ++ + +GIS+ GG +Y+ V + G + GD I NG
Sbjct: 17 PTVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGR 76
Query: 144 DLRAATAEEAAYELAKPADKVTVL 167
++ T E A + + +VT+
Sbjct: 77 SIKGKTKVEVAKMIQEVKGEVTIH 100
Score = 32.0 bits (73), Expect = 0.030
Identities = 5/42 (11%), Positives = 15/42 (35%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSA 42
++ T A ++++ +T+ +LE +
Sbjct: 78 IKGKTKVEVAKMIQEVKGEVTIHYNKLQADPKQLEVLFNGPG 119
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 57.2 bits (139), Expect = 7e-12
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 89 EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAA 148
R + + R + G +L G + V GS GLR GD+IL N +++ A
Sbjct: 2 RVRSVEVA-RGRAGYGFTLSGQA--PCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKA 58
Query: 149 TAEEAAYELAKPADKVTVL 167
+ E+ + K + + ++
Sbjct: 59 SHEDVVKLIGKCSGVLHMV 77
Score = 27.6 bits (62), Expect = 0.75
Identities = 3/28 (10%), Positives = 14/28 (50%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSP 28
++ A+++ ++ +C + M++
Sbjct: 55 VKKASHEDVVKLIGKCSGVLHMVIAEGV 82
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 58.2 bits (141), Expect = 7e-12
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 8/103 (7%)
Query: 73 TSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGG-------NAVGIYVHSVQSGSL 125
+S + ++ R R T + LGI +VGG +G Y+ + G
Sbjct: 2 SSGSSGHYIFPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGS 61
Query: 126 GYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
G L G ++LE+NG L + T EE +++ + + +
Sbjct: 62 AEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEIC 104
Score = 28.6 bits (64), Expect = 0.53
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPD 29
+ S TY+ S++ Q + V+ +
Sbjct: 82 LTSKTYEEVQSIISQQSGEAEICVRLDLN 110
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 57.6 bits (140), Expect = 9e-12
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 95 IETRKCSN-LGISLVGG------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR 146
+ K N G + GG + + + SV+ G G ++ GDR+L +G L
Sbjct: 7 VTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLL 66
Query: 147 AATAEEAAYELAKPADKVTVL 167
T EA L + + +L
Sbjct: 67 GTTHAEAMSILKQCGQEAALL 87
Score = 33.4 bits (77), Expect = 0.007
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKY 31
+ T+ A S+L+QCG +L++Y +
Sbjct: 65 LLGTTHAEAMSILKQCGQEAALLIEYDVSET 95
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 57.8 bits (140), Expect = 1e-11
Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 11/115 (9%)
Query: 62 GTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSN-LGISLVGGN-----AVGI 115
G++ H + L ++ G+ L I+ +K + LG S+ + + I
Sbjct: 3 GSHHHHHHHHGSENLYFQGSYNTKKIGKR--LNIQLKKGTEGLGFSITSRDVTIGGSAPI 60
Query: 116 YVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYEL--AKPADKVTVL 167
YV ++ G L+ GDR++E NG DL + EE L K V++L
Sbjct: 61 YVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLL 115
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 57.8 bits (140), Expect = 1e-11
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 10/90 (11%)
Query: 88 GEPRFLMIETRKCSN-LGISLVGG--------NAVGIYVHSVQSGSLGYSAG-LRTGDRI 137
G +E K S LGIS++G +GI+V +V G + G ++ D +
Sbjct: 1 GHMELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLL 60
Query: 138 LEYNGTDLRAATAEEAAYELAKPADKVTVL 167
+E +GT L T AA L +V +
Sbjct: 61 VEVDGTSLVGVTQSFAASVLRNTKGRVRFM 90
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 57.5 bits (139), Expect = 1e-11
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 87 SGEPRFLMIETRKCSNLGISLVGG---NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNG 142
+ P + I S LGISL N I + ++ S+ +G L GD IL +G
Sbjct: 13 ASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDG 72
Query: 143 TDLRAATAEEAAYELAKPADKVT 165
T + + EA LA ++KV
Sbjct: 73 TSMEHCSLLEATKLLASISEKVR 95
Score = 29.7 bits (67), Expect = 0.21
Identities = 7/42 (16%), Positives = 13/42 (30%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSA 42
M + A +L + + + P L S S+
Sbjct: 75 MEHCSLLEATKLLASISEKVRLEILPVPQSQRPLRPSSGPSS 116
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 56.5 bits (137), Expect = 2e-11
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 89 EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRA 147
PR + + G +L + G Y+ SV GS +GLR DR++E NG ++
Sbjct: 4 RPRLCHLR-KGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 62
Query: 148 ATAEEAAYELAKPADKVTVL 167
E + D+ +L
Sbjct: 63 LRHAEVVASIKAREDEARLL 82
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding
protein, membrane, sensory transduction, vision; 1.55A
{Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Length = 96
Score = 56.9 bits (138), Expect = 2e-11
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 103 LGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPA 161
LG+SL G + + G L+ GD I ++NG L + +
Sbjct: 22 LGLSLSPNEI-GCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGAN 80
Query: 162 DKVTVL 167
KV++
Sbjct: 81 GKVSME 86
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 57.5 bits (139), Expect = 2e-11
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
Query: 72 NTSTLTRTHVCKDERSGEPRFLMIETRKCSN-LGISLVGG---NAVGIYVHSVQSGSLGY 127
+ T + + +IE K N LG+SL G + + I+V +
Sbjct: 6 SGDAFTDQKIRQRYADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAA 65
Query: 128 SAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
+ G +R GD +LE N L + + A+ + KV ++
Sbjct: 66 ADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLV 106
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 57.0 bits (138), Expect = 2e-11
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 5/102 (4%)
Query: 69 IQHNTSTLTRTHVCKDERSGEPR-FLMIE-TRKCSNLGISLVGG--NAVGIYVHSVQSGS 124
+ H+ + + + + F +E R G SL GG + +YV +
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMDFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDG 60
Query: 125 LGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT 165
+G +R GD ILE NG + A + +V
Sbjct: 61 PAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVR 102
Score = 26.2 bits (58), Expect = 3.3
Identities = 2/25 (8%), Positives = 12/25 (48%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQ 25
++ + A +++ G + + ++
Sbjct: 82 TKNMKHSRAIELIKNGGRRVRLFLK 106
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein;
1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 56.5 bits (137), Expect = 2e-11
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 9/74 (12%)
Query: 103 LGISLVGG--------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEA 153
GI +V G GI++ + S + G L+ GDRIL NG D+R +T +
Sbjct: 19 FGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAV 78
Query: 154 AYELAKPADKVTVL 167
+ + K+ +
Sbjct: 79 IDLIKEADFKIELE 92
Score = 30.7 bits (70), Expect = 0.069
Identities = 7/30 (23%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDK 30
+R++T Q ++++ I + +Q + DK
Sbjct: 70 VRNSTEQAVIDLIKEADFKIELEIQ-TFDK 98
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 57.4 bits (139), Expect = 2e-11
Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 6/106 (5%)
Query: 68 SIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGG-----NAVGIYVHSVQS 122
H++S + +S R + ++ +LGIS+ GG V I++ +
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHP 62
Query: 123 GSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
+ LR GDRI+ GT T +A L + + +
Sbjct: 63 TGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQ 108
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 57.0 bits (138), Expect = 2e-11
Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 89 EPRFLMIETRKCSN-LGISLVGG---NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGT 143
+ ++IE K + LG+S+VGG I +H V G L GD+ILE NG
Sbjct: 15 PGQEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGV 74
Query: 144 DLRAATAEEAAYELAKPADKVTVL 167
DLR ++ EEA L + KV ++
Sbjct: 75 DLRNSSHEEAITALRQTPQKVRLV 98
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 57.0 bits (138), Expect = 2e-11
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 70 QHNTSTLTRTHVCKDERSGEPRFLMIETRKCSN-LGISLVGG-----NAVGIYVHSVQSG 123
H+ S+ P+ I + + LG S+VGG + IYV +V +
Sbjct: 4 HHHHSSGVDLGTENLYFQSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAK 63
Query: 124 SLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
G L+ GD+I+ NG L T EEA L + VT++
Sbjct: 64 GAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLM 108
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa,
Na/PI cotransporter C- terminal-associated protein,
NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 56.7 bits (137), Expect = 2e-11
Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 89 EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRA 147
PR + ++ N G L + G + ++ GS AGL GDR+L NG +
Sbjct: 13 NPRECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDK 72
Query: 148 ATAEEAAYELAKPADKVTVL 167
+ EL + + L
Sbjct: 73 EEHAQVV-ELVRKSGNSVTL 91
Score = 25.9 bits (57), Expect = 3.8
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSG 38
+ + ++R+ GNS+T+LV D Y + +
Sbjct: 70 VDKEEHAQVVELVRKSGNSVTLLVL-DGDSYEKAVKNQ 106
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 57.1 bits (138), Expect = 2e-11
Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 19/126 (15%)
Query: 48 SGRGSGSPTPCN-SPGTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGIS 106
SG P P + I L + + + + LG+
Sbjct: 6 SGHSHSDKHPVTWQPSKDGDRLIGR--ILLNK----------RLKDGSVPRDSGAMLGLK 53
Query: 107 LVGG-----NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP 160
+VGG + ++ V+ GSL + G LR GD +LE+NG L+ AT EE + +
Sbjct: 54 VVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILES 113
Query: 161 ADKVTV 166
+ V
Sbjct: 114 KPEPQV 119
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 58.8 bits (142), Expect = 3e-11
Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 4/118 (3%)
Query: 53 GSPTPCNSPGTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSN--LGISLVGG 110
G+P S T + + H T T E ++ K + LG+SL
Sbjct: 75 GTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSPN 134
Query: 111 NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
G + + G L+ GD I ++NG L + KV++
Sbjct: 135 EI-GCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSME 191
Score = 50.3 bits (120), Expect = 3e-08
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 7/78 (8%)
Query: 97 TRKCSNLGISLVGGN----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR--AAT 149
+ +G+ + GG G + V + L+ D I + NGT + + T
Sbjct: 25 KVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMT 84
Query: 150 AEEAAYELAKPADKVTVL 167
+ +K L
Sbjct: 85 TLKVHQLFHTTYEKAVTL 102
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 58.2 bits (141), Expect = 3e-11
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Query: 87 SGEPRFLMIE-TRKCSNLGISLVGG-------NAVGIYVHSVQSGSLGYSAG-LRTGDRI 137
SG + I R S LG S+ GG + I++ + G G LR D I
Sbjct: 1 SGSMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSI 60
Query: 138 LEYNGTDLRAATAEEAAYELAKPADKVTVL 167
L N D+R T A L + V +
Sbjct: 61 LFVNEVDVREVTHSAAVEALKEAGSIVRLY 90
Score = 56.7 bits (137), Expect = 1e-10
Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 8/105 (7%)
Query: 71 HNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGG-------NAVGIYVHSVQSG 123
++ R +V + + E + + LG S+ GG IYV + G
Sbjct: 81 KEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEG 140
Query: 124 SLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
+ G L+ GD+IL N L E+A L D V +
Sbjct: 141 GAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLK 185
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 56.6 bits (137), Expect = 3e-11
Identities = 26/107 (24%), Positives = 39/107 (36%), Gaps = 9/107 (8%)
Query: 70 QHNTSTLTRTHVCKDERSGEPRFLMIETRKCSN-LGISLVGG-------NAVGIYVHSVQ 121
H+ + ++ + I+ K LG S+ GG IYV +
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKII 62
Query: 122 SGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
G G L+ GDR+L N L T EEA L ++ V +
Sbjct: 63 DGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLK 109
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide
binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 56.2 bits (136), Expect = 3e-11
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 2/66 (3%)
Query: 103 LGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPA 161
LG+SL G + + G L+ GD I ++NG L +
Sbjct: 16 LGLSLSPNEI-GCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGAN 74
Query: 162 DKVTVL 167
KV++
Sbjct: 75 GKVSME 80
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain,
arhgef11, KIAA0380, structural genomics, NPPSFA; NMR
{Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 56.2 bits (136), Expect = 3e-11
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 87 SGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLR 146
SG R ++I+ + G ++ G + V SV+ G AG++ GDRI++ NGT +
Sbjct: 6 SGVQRCVIIQ-KDQHGFGFTVSGDR--IVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVT 62
Query: 147 AATAEEAAYELAKPADKVTVL 167
++ E +L K V +
Sbjct: 63 NSSHLEVV-KLIKSGAYVALT 82
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 57.4 bits (138), Expect = 3e-11
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 14/93 (15%)
Query: 89 EPRFLMIETRKCSNLGISLVGG--------------NAVGIYVHSVQSGSLGYSAGLRTG 134
+ + LG S+ GG GIYV V G AGL+ G
Sbjct: 26 RVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIG 85
Query: 135 DRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
D+I++ NG D+ T ++A L K +++V L
Sbjct: 86 DKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRL 118
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 55.8 bits (135), Expect = 3e-11
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 87 SGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLR 146
S R + I R G ++ + + V +V SG AGL+ D +L+ N +
Sbjct: 1 SMRYRQITIP-RGKDGFGFTICCDS--PVRVQAVDSGGPAERAGLQQLDTVLQLNERPVE 57
Query: 147 AATAEEAAYELAKPADKVTVL 167
E A+E+ ++ +L
Sbjct: 58 HWKCVELAHEIRSCPSEIILL 78
Score = 25.8 bits (57), Expect = 4.1
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSP 28
+ A +R C + I +LV
Sbjct: 56 VEHWKCVELAHEIRSCPSEIILLVWRMV 83
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 56.2 bits (136), Expect = 3e-11
Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 90 PRFLMIETRKCSN-LGISLVGG-------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEY 140
+ + I+ K LG S+ GG IYV + G + G L+ GD++L
Sbjct: 2 EKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61
Query: 141 NGTDLRAATAEEAAYELAKPADKVTVL 167
N L T EEA L +D V +
Sbjct: 62 NSVSLEEVTHEEAVTALKNTSDFVYLK 88
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 56.2 bits (136), Expect = 3e-11
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 9/98 (9%)
Query: 79 THVCKDERSGEPRFLMIETRKCSN-LGISLVGG-------NAVGIYVHSVQSGSLGYSAG 130
+H D + + K ++ LGIS+ G A GIYV S+ GS G
Sbjct: 2 SHGYSDASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDG 61
Query: 131 -LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
+ D+IL + +++ + L + V +L
Sbjct: 62 RIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLL 99
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 56.3 bits (136), Expect = 3e-11
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 87 SGEPRFLMIETRKCSNLGISLVGG---NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNG 142
SG L+ + + LGI++ GG + ++Q G ++ G L+ G ILE NG
Sbjct: 3 SGSSGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNG 62
Query: 143 TDLRAATAEEAAYELAKPADKVT 165
LR EAA +A+
Sbjct: 63 LTLRGKEHREAARIIAEAFKTKD 85
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 56.2 bits (136), Expect = 4e-11
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 87 SGEPRFLMIETRKCSN-LGISLVGG--------NAVGIYVHSVQSGSLGYSAG-LRTGDR 136
SG + + LG S+ GG GI+V + G + AG L+ GDR
Sbjct: 3 SGSSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDR 62
Query: 137 ILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
+L NG D+ A + A L + + +L
Sbjct: 63 VLSINGVDVTEARHDHAVSLLTAASPTIALL 93
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter
usage, alternative splicing, cell junction, cell
membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 55.4 bits (134), Expect = 4e-11
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 97 TRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAY 155
+ +N L G+ I+V + L G L GD IL+ NGT + +A
Sbjct: 7 MKSRANEEYGLRLGS--QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARK 64
Query: 156 ELAKPADKVT 165
+ K K+
Sbjct: 65 LIEKSRGKLQ 74
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 55.9 bits (135), Expect = 4e-11
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 86 RSGEPRFLMIETRKCSNLGISLVGG----------NAVGIYVHSVQSGSLGYSAG-LRTG 134
SG+ L++ R +LG +++GG ++ GI+V + G L+
Sbjct: 5 SSGKSLTLVLH-RDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIH 63
Query: 135 DRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
DRI+E NG DL AT ++A + + V
Sbjct: 64 DRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQ 96
Score = 28.9 bits (65), Expect = 0.31
Identities = 5/29 (17%), Positives = 9/29 (31%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPD 29
+ AT+ A + I + V
Sbjct: 74 LSRATHDQAVEAFKTAKEPIVVQVLRRTS 102
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 55.7 bits (135), Expect = 4e-11
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 95 IETRKCSN-LGISLVGG------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR 146
+E K LGI++ G GI+V S+ S G ++ GD+I+ +GT+L+
Sbjct: 8 VELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQ 67
Query: 147 AATAEEAAYELAKPADKVTVL 167
T ++A L V +
Sbjct: 68 GFTNQQAVEVLRHTGQTVLLT 88
Score = 29.2 bits (66), Expect = 0.23
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDK 30
++ T Q A VLR G ++ + + +
Sbjct: 66 LQGFTNQQAVEVLRHTGQTVLLTLMRRGET 95
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 55.9 bits (135), Expect = 5e-11
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 90 PRFLMIETRKCSNLGISLVGG---NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL 145
++ + + LG SL GG I VH V L G ++ G+ +L NG L
Sbjct: 16 IHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSL 75
Query: 146 RAATAEEAAYELAKPADKVTVL 167
+ T +A L + + +
Sbjct: 76 KGTTHHDALAILRQAREPRQAV 97
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling
protein; 1.80A {Mus musculus}
Length = 106
Score = 55.5 bits (134), Expect = 5e-11
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 90 PRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAA 148
PR + ++ N G L + G + ++ GS AGL GDR+L NG +
Sbjct: 2 PRESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKE 61
Query: 149 TAEEAAYELAKPADKVTVL 167
+ EL + + L
Sbjct: 62 EHAQVV-ELVRKSGNSVTL 79
Score = 26.2 bits (58), Expect = 3.0
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSG 38
+ + ++R+ GNS+T+LV D Y + +
Sbjct: 58 VDKEEHAQVVELVRKSGNSVTLLVL-DGDSYEKAVKNQ 94
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 55.4 bits (134), Expect = 6e-11
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 94 MIETRKCSN--LGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATA 150
+I+ K + +GI L V + G + + G L GD ILE NGT++ +
Sbjct: 15 LIQFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSV 74
Query: 151 EEAAYELAKPADKVTV 166
++ + + +++
Sbjct: 75 DQLQKAMKETKGMISL 90
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 55.4 bits (134), Expect = 6e-11
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 9/82 (10%)
Query: 95 IETRKCSN-LGISLVGG-------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL 145
I + ++ LG S+ GG + GI++ + G G L D +L N D+
Sbjct: 8 IVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDV 67
Query: 146 RAATAEEAAYELAKPADKVTVL 167
A L + V ++
Sbjct: 68 SEVVHSRAVEALKEAGPVVRLV 89
Score = 31.1 bits (71), Expect = 0.049
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHE 33
+ + A L++ G + ++V+ E
Sbjct: 67 VSEVVHSRAVEALKEAGPVVRLVVRRRQPPPEE 99
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 56.0 bits (135), Expect = 6e-11
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Query: 89 EPRFLMIETRKCSN--LGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTD 144
EP + + K LG + + + + + G +G ++ GD IL N
Sbjct: 6 EPNVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRP 65
Query: 145 LRAATAEEAAYELAKPADKVTVL 167
L + + A L A + V+
Sbjct: 66 LVDLSYDSALEVLRGIASETHVV 88
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 55.4 bits (134), Expect = 7e-11
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 103 LGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAK 159
G S+ GG + +YV + G +R GD+I+E NG R T A +
Sbjct: 24 FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKS 83
Query: 160 PADKVTVL 167
+V +L
Sbjct: 84 GGRRVRLL 91
Score = 27.3 bits (61), Expect = 1.1
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSP 28
R T+ A +++ G + +L++
Sbjct: 69 TRDMTHARAIELIKSGGRRVRLLLKRGT 96
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A
{Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 55.0 bits (133), Expect = 7e-11
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 87 SGEPRFLMIETRKCSN-LGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNG 142
S +E ++ LGI++ G I + S+ G L G + GDRIL N
Sbjct: 1 SSGAIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINS 60
Query: 143 TDLRAATAEEAAYELAKPADKVTVL 167
+ L+ EA + L + VT+
Sbjct: 61 SSLKGKPLSEAIHLLQMAGETVTLK 85
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 55.0 bits (133), Expect = 9e-11
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 9/82 (10%)
Query: 95 IETRKCSN-LGISLVGG-------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL 145
I + + LG ++VGG N GIYV ++ G L+ GD+IL NG DL
Sbjct: 11 INLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDL 70
Query: 146 RAATAEEAAYELAKPADKVTVL 167
+ ++A V++
Sbjct: 71 KNLLHQDAVDLFRNAGYAVSLR 92
Score = 30.8 bits (70), Expect = 0.078
Identities = 6/30 (20%), Positives = 17/30 (56%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDK 30
+++ +Q A + R G ++++ VQ+ +
Sbjct: 70 LKNLLHQDAVDLFRNAGYAVSLRVQHRLES 99
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 54.6 bits (132), Expect = 9e-11
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Query: 87 SGEPRFLMIETRKCSNLGISLVGGNAV----GIYVHSVQSGSLGYSAGLRTGDRILEYNG 142
S +PR L +E + G L + G ++ V G AG++ GDR++ G
Sbjct: 1 SMKPRCLHLE-KGPQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAG 59
Query: 143 TDLRAATAEEAAYELAKPADKVTVL 167
+ EE + V++
Sbjct: 60 ESVEGLGHEETVSRIQGQGSCVSLT 84
Score = 25.8 bits (57), Expect = 3.8
Identities = 5/36 (13%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSP--DKYHEL 34
+ ++ S ++ G+ +++ V P D+ +
Sbjct: 62 VEGLGHEETVSRIQGQGSCVSLTVV-DPEADRETSV 96
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 54.2 bits (131), Expect = 9e-11
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 97 TRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAY 155
+RK G+ L I+V + SL G ++ GD +L+ NGT + +A
Sbjct: 9 SRKNEEYGLRLASH----IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKT 64
Query: 156 ELAKPADKVTVL 167
+ + K+ ++
Sbjct: 65 LIERSKGKLKMV 76
Score = 26.5 bits (59), Expect = 2.0
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQ 25
+ + A +++ + + M+VQ
Sbjct: 54 TENMSLTDAKTLIERSKGKLKMVVQ 78
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 54.7 bits (132), Expect = 9e-11
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 94 MIETRKCSN--LGISLVGGNAVGIYVHSVQSGSLGY-SAGLRTGDRILEYNGTDLRAATA 150
+++ +K ++ +GI+L V + G + + L GD I E NG + T
Sbjct: 4 LVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTV 63
Query: 151 EEAAYELAKPADKVTV 166
E+ L + +T
Sbjct: 64 EQLQKMLREMRGSITF 79
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 55.0 bits (133), Expect = 9e-11
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 89 EPRFLMIETRKCSN-LGISLVGG-----NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYN 141
+E + + LG+ L+ G A G+Y+ ++ GS + G L GDRILE N
Sbjct: 6 SGYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVN 65
Query: 142 GTDLRAATAEEAAYELAKPADKVTVL 167
G+ L A + K+ L
Sbjct: 66 GSSLLGLGYLRAVDLIRHGGKKMRFL 91
Score = 33.1 bits (76), Expect = 0.012
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSA 42
+ Y A ++R G + LV S + + SG SS
Sbjct: 69 LLGLGYLRAVDLIRHGGKKMRFLVAKSDVETAKKIHSGPSSG 110
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 54.6 bits (132), Expect = 1e-10
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 89 EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRA 147
+PR ++I+ + + G L G G + ++ GS +AGL+ D ++ NG + A
Sbjct: 5 QPRVVVIK-KGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEA 63
Query: 148 ATAEEAAYELAKPADKVTVL 167
+ + K D+ T+L
Sbjct: 64 LDHDGVVEMIRKGGDQTTLL 83
Score = 27.6 bits (62), Expect = 0.98
Identities = 6/33 (18%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSP-DKYH 32
+ + + ++R+ G+ T+LV ++ H
Sbjct: 61 VEALDHDGVVEMIRKGGDQTTLLVLDKELERPH 93
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 55.2 bits (133), Expect = 1e-10
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 78 RTHVCKDERSGEPRFLMIETRKCSN-LGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRT 133
+ ++ + +F+ + RK S G ++VGG + + S+ G + T
Sbjct: 5 KPFFTRNPSELKGKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMET 64
Query: 134 GDRILEYNGTDLRAATAEEAAYEL--AKPADKVTVL 167
GD I+ N T + T + V +
Sbjct: 65 GDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLE 100
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 56.7 bits (136), Expect = 1e-10
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 89 EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRA 147
PR ++ + S G +L + G ++ SV S ++GLR DRI+E NG +
Sbjct: 9 RPRLCTMK-KGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEG 67
Query: 148 ATAEEAAYELAKPADKVTVL 167
+ + D+ +L
Sbjct: 68 KQHGDVVSAIRAGGDETKLL 87
Score = 35.9 bits (82), Expect = 0.003
Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 5/90 (5%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGSPTPCNS 60
M + S +R G+ +LV + S E+ + P P +
Sbjct: 65 MEGKQHGDVVSAIRAGGDETKLLVVDRETDEFFKKCRVIPSQEHLN-----GPLPVPFTN 119
Query: 61 PGTNRKSSIQHNTSTLTRTHVCKDERSGEP 90
+++S + + RS
Sbjct: 120 GEIQKENSREALAEAALESPRPALVRSASS 149
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 54.8 bits (132), Expect = 1e-10
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 2/67 (2%)
Query: 103 LGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP 160
LG + + + + + G +G ++ GD IL N L + + A L
Sbjct: 15 LGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI 74
Query: 161 ADKVTVL 167
A + V+
Sbjct: 75 ASETHVV 81
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 54.7 bits (132), Expect = 2e-10
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 85 ERSGEPRFLMIETRKCSN--LGISLVGG-----NAVGIYVHSVQSGSLGYSAG-LRTGDR 136
+ + E K + LG S+VG +GI+V +Q GS+ + G L+ D+
Sbjct: 14 NMAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQ 73
Query: 137 ILEYNGTDL-RAATAEEAAYELAKPADKVTVL 167
IL NG L + T ++A L K D V ++
Sbjct: 74 ILAINGQALDQTITHQQAISILQKAKDTVQLV 105
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 54.3 bits (131), Expect = 2e-10
Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 12/91 (13%)
Query: 89 EPRFLMIETRKCSN-LGISLVGGNAV----------GIYVHSVQSGSLGYSAG-LRTGDR 136
+E K N LGIS+ GIYV +V S G + GDR
Sbjct: 7 PGDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDR 66
Query: 137 ILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
+L NG L AT ++A L V +L
Sbjct: 67 VLAVNGVSLEGATHKQAVETLRNTGQVVHLL 97
Score = 29.2 bits (66), Expect = 0.28
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHE 33
+ AT++ A LR G + +L++ +
Sbjct: 75 LEGATHKQAVETLRNTGQVVHLLLEKGQSPTSK 107
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 54.6 bits (132), Expect = 2e-10
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 93 LMIETRKCSN-LGISLVGGN-----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL 145
L I+ +K + LG S+ + + IYV ++ G L+ GDR++E NG DL
Sbjct: 13 LNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDL 72
Query: 146 RAATAEEAAYEL--AKPADKVTVL 167
+ EE L K V++L
Sbjct: 73 AGKSQEEVVSLLRSTKMEGTVSLL 96
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein;
PDZ domain, cytoplasm, membrane, polymorphism, protein
binding; 2.70A {Homo sapiens}
Length = 104
Score = 54.0 bits (130), Expect = 2e-10
Identities = 14/100 (14%), Positives = 35/100 (35%), Gaps = 9/100 (9%)
Query: 77 TRTHVCKDERSGEPRFLMIETRKCSNLGISLVGG---------NAVGIYVHSVQSGSLGY 127
+ + D + + + +E + G + + + + +Q S +
Sbjct: 3 SGSSGLSDFSWSQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAH 62
Query: 128 SAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
AGL+ GD + NG T ++ + + +T+
Sbjct: 63 CAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIE 102
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 54.3 bits (131), Expect = 2e-10
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 6/100 (6%)
Query: 74 STLTRTHVCKDERSGEPRFLMIETRKCSN-LGISLVGG--NAVGIYVHSVQSGSLGYSAG 130
S+ + +D + FL +K + G +++GG + V SV G
Sbjct: 2 SSGSSGLFTRDASQLKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDG 61
Query: 131 -LRTGDRILEYNGTDLRAATAEEAAYEL--AKPADKVTVL 167
+ TGD I+ N + T + V ++
Sbjct: 62 KMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLV 101
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 53.9 bits (130), Expect = 3e-10
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 10/91 (10%)
Query: 87 SGEPRFLMIETRKCSN-LGISLVGG--------NAVGIYVHSVQSGSLGYSAG-LRTGDR 136
S +E K + LGIS++G +GI+V +V G G ++ D+
Sbjct: 5 SSGLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQ 64
Query: 137 ILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
I+E +G L T AA L V +
Sbjct: 65 IVEVDGISLVGVTQNFAATVLRNTKGNVRFV 95
Score = 25.4 bits (56), Expect = 5.5
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 1 MRSATYQLAASVLRQCGNSITMLV 24
+ T AA+VLR ++ ++
Sbjct: 73 LVGVTQNFAATVLRNTKGNVRFVI 96
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 53.4 bits (129), Expect = 3e-10
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
Query: 103 LGISLVGG-------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAA 154
LG S+ GG IY+ + G G L+ GDR+L N T+L+ EEA
Sbjct: 16 LGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAV 75
Query: 155 YELAKPADKVTVL 167
L +D V +
Sbjct: 76 ASLKNTSDMVYLK 88
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 53.1 bits (128), Expect = 3e-10
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 5/81 (6%)
Query: 87 SGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLR 146
+ +PR + + ++G G + S+ S GL T I E NG ++
Sbjct: 2 AMDPRTITMHKDSTGHVGFIFKNGK-----ITSIVKDSSAARNGLLTEHNICEINGQNVI 56
Query: 147 AATAEEAAYELAKPADKVTVL 167
+ A L+ VT+
Sbjct: 57 GLKDSQIADILSTSGTVVTIT 77
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 53.7 bits (129), Expect = 3e-10
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 89 EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAA 148
PR + T + +LG +L G + VH + AG R GD I+ D +
Sbjct: 23 MPRSIRF-TAEEGDLGFTLRGNA--PVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWL 79
Query: 149 TAEEAAYELAKPADKVTV 166
T E +L K + +
Sbjct: 80 TLSEVM-KLLKSFGEDEI 96
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 53.0 bits (128), Expect = 3e-10
Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 4/76 (5%)
Query: 95 IETRKCSN-LGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATA 150
I + G ++GG IY+ + + G LR+GD ++ +GT + +
Sbjct: 6 IFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSH 65
Query: 151 EEAAYELAKPADKVTV 166
+ + + A + V
Sbjct: 66 QLVVQLMQQAAKQGHV 81
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 53.6 bits (129), Expect = 4e-10
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 85 ERSGEPRFLMIETRKCSNLGISLVGGN----AVGIYVHSVQSGSLGYSAG-LRTGDRILE 139
+P F +I K + LG+ ++GG +Y+H V G Y G L+ GD+++
Sbjct: 9 PLDRDPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVS 68
Query: 140 YNGTDLRAATAEEAA 154
N + + EEA
Sbjct: 69 INKESMIGVSFEEAK 83
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 54.1 bits (130), Expect = 4e-10
Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 12/77 (15%)
Query: 103 LGISLVGGNAV-----------GIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATA 150
LG + G++V GI++ + G L S G L D +LE NG ++ +
Sbjct: 44 LGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSL 103
Query: 151 EEAAYELAKPADKVTVL 167
++ + + + +
Sbjct: 104 DQVTDMMIANSRNLIIT 120
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 52.3 bits (126), Expect = 6e-10
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Query: 88 GEPRFLMIETRKCSN-LGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTD 144
G +I K LG ++ I V + G +G + GD + E NG
Sbjct: 1 GSDSVKIIRLVKNREPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIP 60
Query: 145 LRAATAEEAAYELAKPADKVT 165
+ EE LA+ +T
Sbjct: 61 VEDKRPEEIIQILAQSQGAIT 81
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 52.6 bits (127), Expect = 6e-10
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 87 SGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTD 144
SG P + R S G LVGG + + + V +GS A L GD I NG
Sbjct: 6 SGMPHS--VTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGES 63
Query: 145 LRAATAEEAAYELAKPADKVT 165
T EA + D +T
Sbjct: 64 TELMTHLEAQNRIKGCHDHLT 84
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 52.8 bits (127), Expect = 8e-10
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 94 MIETRKCSNLGISLVGG---NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAAT 149
++ +K +L ++L GG + V +V G G + GD I+ NG + T
Sbjct: 21 LLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYT 80
Query: 150 AEEA 153
EA
Sbjct: 81 LAEA 84
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 52.9 bits (127), Expect = 9e-10
Identities = 18/99 (18%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 77 TRTHVCKDERSGEPRFLMIETRKCSN---LGISLVGG----NAVGIYVHSVQSGSLGYSA 129
+ + ++ E ++ + ++ LG+++ + +GIY+ + S+
Sbjct: 5 SSGDIHQEMDREELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKD 64
Query: 130 G-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
G +R GDRI++ NG +++ E A ++ ++L
Sbjct: 65 GRIREGDRIIQINGIEVQNRE-EAVALLTSEENKNFSLL 102
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein; 1.70A
{Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 51.9 bits (125), Expect = 1e-09
Identities = 16/53 (30%), Positives = 18/53 (33%), Gaps = 2/53 (3%)
Query: 103 LGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEA 153
G + GG I V V A LR GD I+ NG EA
Sbjct: 14 WGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEA 66
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 52.5 bits (126), Expect = 1e-09
Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 17/117 (14%)
Query: 52 SGSPTPCNSPGTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGGN 111
SGS P + +S + T+ + K LG ++
Sbjct: 3 SGSSGP-ITDERVYESIGHYGGETVKIVRIEKARDIP--------------LGATVRNEM 47
Query: 112 AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
+ + + G +G L GD +LE NG ++R E L+ +T +
Sbjct: 48 -DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFV 103
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 52.4 bits (126), Expect = 1e-09
Identities = 29/95 (30%), Positives = 36/95 (37%), Gaps = 14/95 (14%)
Query: 87 SGEPRFLMIETRKCSN--LGISLVGG-----------NAVGIYVHSVQSGSLGYSAG-LR 132
S P + +K LGIS+ GG GI++ V G LR
Sbjct: 5 SSGPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLR 64
Query: 133 TGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
G R+LE N L T EA L D +TVL
Sbjct: 65 VGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVL 99
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 52.3 bits (126), Expect = 1e-09
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 87 SGEPRFLMIETRKCSN-LGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNG 142
S + L + R+ + G ++GG I + +V + G L GD ++ +G
Sbjct: 5 SSGYKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDG 64
Query: 143 TDLRAATAEEAAYELAKPADKVTV 166
+ T + A V
Sbjct: 65 IPVAGKTHRYVIDLMHHAARNGQV 88
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding; 1.80A
{Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 52.0 bits (125), Expect = 1e-09
Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 9/90 (10%)
Query: 87 SGEPRFLMIETRKCSNLGISLVGG---------NAVGIYVHSVQSGSLGYSAGLRTGDRI 137
S + + L +E G + + +V V S AGL GD I
Sbjct: 2 SQQRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTI 61
Query: 138 LEYNGTDLRAATAEEAAYELAKPADKVTVL 167
NG ++ E + + + +
Sbjct: 62 ASVNGLNVEGIRHREIVDIIKASGNVLRLE 91
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 52.0 bits (125), Expect = 1e-09
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 103 LGISLVGG----NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAA 154
LGIS+VG GIY+ S+ G + G + GD +L+ N + + ++A
Sbjct: 19 LGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAV 75
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 51.6 bits (124), Expect = 2e-09
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 89 EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRA 147
R ++I+ + + G L G G + ++ GS +AGL+ D ++ NG + A
Sbjct: 6 SGRVVVIK-KGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEA 64
Query: 148 ATAEEAAYELAKPADKVTVL 167
+ + K D+ T+L
Sbjct: 65 LDHDGVVEMIRKGGDQTTLL 84
Score = 26.9 bits (60), Expect = 1.9
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSP-DKYHELEGSGS 39
+ + + ++R+ G+ T+LV + + L G S
Sbjct: 62 VEALDHDGVVEMIRKGGDQTTLLVLDKEAESIYSLSGPSS 101
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 52.1 bits (125), Expect = 2e-09
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 84 DERSGEPRFLMIETRKCSN-LGISLVGG-------NAVGIYVHSVQSGSLGYSAG-LRTG 134
I + + LG ++VGG N GIYV ++ G L+ G
Sbjct: 10 GRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEG 69
Query: 135 DRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
D+IL NG DL+ ++A V++
Sbjct: 70 DKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLR 102
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 51.3 bits (123), Expect = 2e-09
Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Query: 83 KDERSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNG 142
+ + + + R G ++ + + V +V SG AGL+ D +L+ N
Sbjct: 8 EGDPENGEKLQITIRRGKDGFGFTICCDS--PVRVQAVDSGGPAERAGLQQLDTVLQLNE 65
Query: 143 TDLRAATAEEAAYELAKPADKVTVL 167
+ E A+E+ ++ +L
Sbjct: 66 RPVEHWKCVELAHEIRSCPSEIILL 90
Score = 25.5 bits (56), Expect = 5.9
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSP 28
+ A +R C + I +LV
Sbjct: 68 VEHWKCVELAHEIRSCPSEIILLVWRVS 95
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 51.1 bits (123), Expect = 2e-09
Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 87 SGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTD 144
S L ++ + G + GG I V V +A LR GD I+ NG
Sbjct: 2 SSGSSGLTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQS 61
Query: 145 LRAATAEEA 153
EA
Sbjct: 62 AENMLHAEA 70
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 51.3 bits (123), Expect = 2e-09
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 88 GEPRFLMIETRKCSNLGISLVGG----------NAVGIYVHSVQSGSLGYSAGLRTGDRI 137
+ + + K LG S+ GG + GI+V VQ L+ GD+I
Sbjct: 8 LAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKI 66
Query: 138 LEYNGTDLRAATAEEAAYELAKPADKVTVL 167
++ NG +A L + V ++
Sbjct: 67 IQANGYSFINIEHGQAVSLLKTFQNTVELI 96
Score = 26.6 bits (59), Expect = 1.9
Identities = 4/25 (16%), Positives = 13/25 (52%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQ 25
+ + A S+L+ N++ +++
Sbjct: 74 FINIEHGQAVSLLKTFQNTVELIIV 98
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; PDZ, E6 binding, tumor suppressor, peptide
binding protein; 2.15A {Mus musculus}
Length = 85
Score = 50.7 bits (122), Expect = 2e-09
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Query: 95 IETRKCSN-LGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATA 150
+ RK S G ++VGG + + S+ G + TGD I+ N T + T
Sbjct: 4 TKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTH 63
Query: 151 EEAAYEL--AKPADKVTVL 167
+ V +
Sbjct: 64 AQVVKIFQSIPIGASVDLE 82
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog,
phosphorylation, signaling PR LIM domain, PDZ domain;
1.5A {Homo sapiens}
Length = 88
Score = 50.7 bits (122), Expect = 2e-09
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 101 SNLGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEA 153
+ G L GG + + + S++ G A +R GD +L +G + + T EA
Sbjct: 13 APWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEA 67
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 51.1 bits (123), Expect = 2e-09
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 103 LGISLVGG----NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYEL 157
G++L GG + V + G L GD +L NG + T +A +
Sbjct: 24 FGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERI 83
Query: 158 AKPADKVTVL 167
++ ++
Sbjct: 84 RAGGPQLHLV 93
Score = 28.4 bits (64), Expect = 0.45
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 8/42 (19%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSA 42
+ T+ A +R G + ++++ SG SS
Sbjct: 71 TQGLTHAQAVERIRAGGPQLHLVIRRPL--------SGPSSG 104
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 50.3 bits (121), Expect = 3e-09
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 103 LGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEA 153
G L GG + + + + GS + L GD ++ +G + T EA
Sbjct: 13 WGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEA 65
Score = 26.1 bits (58), Expect = 3.0
Identities = 4/28 (14%), Positives = 14/28 (50%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSP 28
+ T+ A + ++ ++++ +Q S
Sbjct: 57 TDTMTHLEAQNKIKSASYNLSLTLQKSK 84
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 53.2 bits (127), Expect = 3e-09
Identities = 35/145 (24%), Positives = 52/145 (35%), Gaps = 11/145 (7%)
Query: 33 ELEGSGSSSAENESVS------GRGSGSPTPCNSPGTNRKSSIQHNTSTLTRTHVCKDER 86
EL S A E + + +P + Q N + +
Sbjct: 13 ELRCGAGSGAGGERWQRVLLSLAEDALTVSPADGEPGPEPEPAQLNGAAEPGAAPPQLPE 72
Query: 87 SGEPRFLMIETRKCSN--LGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYN 141
+ + + RK LGIS+ GG N + I + + G L GD IL N
Sbjct: 73 ALLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVN 132
Query: 142 GTDLRAATAEEAAYELAKPADKVTV 166
G DL +AT +EA L K +V +
Sbjct: 133 GEDLSSATHDEAVQALKKTGKEVVL 157
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 50.4 bits (121), Expect = 4e-09
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 103 LGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEA 153
G L GG V + + + G AG+ GD +L +G + + T EA
Sbjct: 15 WGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEA 67
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 50.8 bits (122), Expect = 4e-09
Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 9/92 (9%)
Query: 84 DERSGEPRFLMIETRKCSNLGISLVGG--------NAVGIYVHSVQSGSLGYSAGLRTGD 135
E + + GI++ GG I + V G L+ D
Sbjct: 2 SHMIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQEND 60
Query: 136 RILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
R+ NG + A +L K +
Sbjct: 61 RVAMVNGVSMDNVEHAFAVQQLRKSGKNAKIT 92
Score = 28.1 bits (63), Expect = 0.72
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQY 26
M + + A LR+ G + + ++
Sbjct: 70 MDNVEHAFAVQQLRKSGKNAKITIRR 95
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 51.3 bits (123), Expect = 4e-09
Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 10/100 (10%)
Query: 61 PGTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSN-LGISLVGG-----NAVG 114
P N + + S + V E + K S LG SL GG
Sbjct: 2 PDLNSSTDSAASASAASDVSVESTA---EATVCTVTLEKMSAGLGFSLEGGKGSLHGDKP 58
Query: 115 IYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEA 153
+ ++ + G+ + ++ GD IL+ GT ++ T EA
Sbjct: 59 LTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEA 98
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 51.0 bits (122), Expect = 4e-09
Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 10/100 (10%)
Query: 62 GTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGG------NAVGI 115
G++ S ++ + + + + + LG+SL G +GI
Sbjct: 1 GSSGSSGLKGEPDCYALSL---ESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGI 57
Query: 116 YVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAA 154
++ S+ G + G LR D+++ NG L + EA
Sbjct: 58 FIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAM 97
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 50.5 bits (121), Expect = 5e-09
Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 12/93 (12%)
Query: 87 SGEPRFLMIETRKCSN--LGISLVGG---------NAVGIYVHSVQSGSLGYSAG-LRTG 134
SG + + + N G ++ V + + GS L+ G
Sbjct: 6 SGSLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVG 65
Query: 135 DRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
DRIL NG + + + VT+
Sbjct: 66 DRILAVNGQSIINMPHADIVKLIKDAGLSVTLR 98
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 50.1 bits (120), Expect = 5e-09
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 11/83 (13%)
Query: 95 IETRKCSNLGISLVGG----------NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTD 144
+ K LG S+ GG + GI+V VQ L+ GD+I++ NG
Sbjct: 7 VRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYS 65
Query: 145 LRAATAEEAAYELAKPADKVTVL 167
+A L + V ++
Sbjct: 66 FINIEHGQAVSLLKTFQNTVELI 88
Score = 27.0 bits (60), Expect = 1.3
Identities = 4/25 (16%), Positives = 13/25 (52%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQ 25
+ + A S+L+ N++ +++
Sbjct: 66 FINIEHGQAVSLLKTFQNTVELIIV 90
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 50.3 bits (120), Expect = 5e-09
Identities = 12/58 (20%), Positives = 22/58 (37%)
Query: 109 GGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166
+G V + L S GL+ GD + NG DL ++ ++++
Sbjct: 33 DDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSL 90
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2
secretion system, protein transport, membrane protein;
1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 49.8 bits (119), Expect = 5e-09
Identities = 12/58 (20%), Positives = 22/58 (37%)
Query: 109 GGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166
+G V + L S GL+ GD + NG DL ++ ++++
Sbjct: 15 DDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSL 72
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 50.1 bits (120), Expect = 5e-09
Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 89 EPRFLMIETRKCSNLGISLVGG----NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGT 143
R + +E R+ LG++LV + ++ G +G L GDR+ NGT
Sbjct: 9 NCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGT 68
Query: 144 DLRAATAEEAAYELAKPADKVTV 166
L + + + +V
Sbjct: 69 SLVGLPLAACQAAVRETKSQTSV 91
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 49.7 bits (119), Expect = 7e-09
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 103 LGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEA 153
G LVGG + + V GS A L GD I +G + T EA
Sbjct: 15 WGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEA 67
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 50.5 bits (121), Expect = 9e-09
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 103 LGISLVGG-----NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL-RAATAEEAAY 155
LG S+V V I+V VQ GS+ L+ D+IL N T L + + ++A
Sbjct: 39 LGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIA 98
Query: 156 ELAKPADKVTVL 167
L + + ++
Sbjct: 99 LLQQTTGSLRLI 110
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 49.8 bits (119), Expect = 9e-09
Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 87 SGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSA--GLRTGDRILEYNG 142
+ ++ + G ++ GG + + V V G+ L GD+++ NG
Sbjct: 15 HDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLING 74
Query: 143 TDLRAATAEEA 153
D+ T ++
Sbjct: 75 RDIAEHTHDQV 85
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 50.1 bits (120), Expect = 1e-08
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Query: 84 DERSGEPRFLMIETRKCSNLGISLVGG-------NAVGIYVHSVQSGSLGYSAG-LRTGD 135
D E + + + +LGI +VG A GIYV SV GS Y G ++ D
Sbjct: 10 DSSLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVND 69
Query: 136 RILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
+I+ +G +++ + L V +
Sbjct: 70 KIVAVDGVNIQGFANHDVVEVLRNAGQVVHLT 101
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 50.0 bits (119), Expect = 1e-08
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 103 LGISLVGGNAVG---IYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK 159
G SL G +YV+SV+ L GL+ GD ILE N A + L++
Sbjct: 31 YGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ 90
Query: 160 PADKVTV 166
P+ + V
Sbjct: 91 PSLGLLV 97
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 96
Score = 49.3 bits (118), Expect = 1e-08
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 87 SGEPRFLMIETRKCSN-LGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
SG+ + + K + G ++ G V + GL GD I+E N ++
Sbjct: 6 SGQAELMTLTIVKGAQGFGFTIADS-PTGQRVKQILDI--QGCPGLCEGDLIVEINQQNV 62
Query: 146 RAATAEEAA 154
+ + E
Sbjct: 63 QNLSHTEVV 71
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 49.2 bits (117), Expect = 1e-08
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 103 LGISLVGGNAVG---IYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK 159
G SL G +YV+SV+ L GL+ GD ILE N A + L++
Sbjct: 22 YGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ 81
Query: 160 PADKVTV 166
P+ + V
Sbjct: 82 PSLGLLV 88
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI, unknown
function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 49.3 bits (118), Expect = 1e-08
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 101 SNLGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEA 153
+ G L GG + + + S++ G A +R GD +L +G + T EA
Sbjct: 15 APWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEA 69
Score = 25.4 bits (56), Expect = 6.3
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDK-YHELEGSGSSS 41
+ T+ A + ++ C S+ M +Q + E SG SS
Sbjct: 61 AQGMTHLEAQNKIKACTGSLNMTLQRASAAAKSEPVSSGPSS 102
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 52.3 bits (124), Expect = 1e-08
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 5/95 (5%)
Query: 72 NTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGL 131
T+ + L+ LG S+ G + S+ G + G+
Sbjct: 279 GLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNG-----IICSLMRGGIAERGGV 333
Query: 132 RTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166
R G RI+E NG + A E+ L+ ++ +
Sbjct: 334 RVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHM 368
Score = 45.0 bits (105), Expect = 3e-06
Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 5/117 (4%)
Query: 55 PTPCNSPGTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGGN--- 111
+ ++ S NT + + S + L +E K LG+ +V
Sbjct: 170 NGINPEDLSQKEYSDIINTQEMYNDDLIHFSNSENCKELQLEKHKGEILGVVVVESGWGS 229
Query: 112 -AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166
+ + ++ +G +G L GD+I+ NGT L + ++ V
Sbjct: 230 ILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQV 286
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 49.4 bits (118), Expect = 1e-08
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 9/92 (9%)
Query: 84 DERSGEPRFLMIETRKCSNLGISLVGG--------NAVGIYVHSVQSGSLGYSAGLRTGD 135
+E E + ++ GI++ GG I + V G L+ D
Sbjct: 9 EEVIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPA-DGLLQEND 67
Query: 136 RILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
R++ NGT + A +L K ++
Sbjct: 68 RVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIV 99
Score = 30.5 bits (69), Expect = 0.12
Identities = 8/40 (20%), Positives = 13/40 (32%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSS 40
M + A LR+ G ++V+ SS
Sbjct: 77 MEDVLHSFAVQQLRKSGKIAAIVVKRPRKVQVAPLSGPSS 116
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 49.5 bits (118), Expect = 2e-08
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 7/87 (8%)
Query: 87 SGEPRFLMIETRKCSNLGISLVGG------NAVGIYVHSVQSGSLGYSAG-LRTGDRILE 139
E +++ + GI L G + + +++ S G L+ GDR++
Sbjct: 13 HTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMA 72
Query: 140 YNGTDLRAATAEEAAYELAKPADKVTV 166
NG +T EEA L + V
Sbjct: 73 INGIPTEDSTFEEANQLLRDSSITSKV 99
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 49.1 bits (117), Expect = 2e-08
Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 14/93 (15%)
Query: 89 EPRFLMIETRKCSNLGISLVGG--------------NAVGIYVHSVQSGSLGYSAGLRTG 134
+ + ++++ + G L G Y+ SV G + + AGLR G
Sbjct: 7 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMG 66
Query: 135 DRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
D ++E NG ++ + + + + + V
Sbjct: 67 DFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK 99
Score = 24.8 bits (54), Expect = 9.2
Identities = 5/26 (19%), Positives = 14/26 (53%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQY 26
+ ++ +++RQ GN++ + V
Sbjct: 77 VVKVGHRQVVNMIRQGGNTLMVKVVM 102
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 48.5 bits (116), Expect = 2e-08
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 103 LGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKP 160
G L GG + + + GS +A L GD IL +G + T +A +
Sbjct: 17 WGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAA 76
Query: 161 ADKVTVL 167
+ ++ +
Sbjct: 77 SYQLCLK 83
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; structural genomi consortium, SGC, ATP-binding, cell
junction; 1.60A {Homo sapiens}
Length = 88
Score = 48.0 bits (115), Expect = 2e-08
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 4/66 (6%)
Query: 90 PRFLMIETRKCSN-LGISLVGGNAV-GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRA 147
+ + K G ++ G V + S GL+ GD I+E N +++A
Sbjct: 2 MELITVHIVKGPMGFGFTIADSPGGGGQRVKQIVDS--PRSRGLKEGDLIVEVNKKNVQA 59
Query: 148 ATAEEA 153
T +
Sbjct: 60 LTHNQV 65
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 48.3 bits (115), Expect = 4e-08
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
Query: 85 ERSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTD 144
+R PR + T + +LG +L G + VH + AG + GD I+ G D
Sbjct: 11 KRWSPPRGIHF-TVEEGDLGFTLRGNT--PVQVHFLDPHCSASLAGAKEGDYIVSIQGVD 67
Query: 145 LRAATAEEAAYELAKPADKVTVL 167
+ T E L + +
Sbjct: 68 CKWLTVSEVMKLLKSFGGEEVEM 90
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 47.9 bits (114), Expect = 6e-08
Identities = 13/105 (12%), Positives = 34/105 (32%), Gaps = 5/105 (4%)
Query: 67 SSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSN-LGISLVGGNAVGIYVHSVQSGSL 125
S + + + K S + + + + LG+ ++ + + + +
Sbjct: 3 SGSSGSKNEKEQLSKAKASVSSLNKVIQTKLTVGNLGLGLVVIQNGP-YLQISHLINKGA 61
Query: 126 GYSAG-LRTGDRILEYNGTDLRAATAEEAAYEL--AKPADKVTVL 167
S G L+ GD ++ ++ T E L + +
Sbjct: 62 AASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIK 106
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 47.4 bits (113), Expect = 7e-08
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 2/81 (2%)
Query: 87 SGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLR 146
SG + I+ + ++ + V +V +G L GD+IL+ N
Sbjct: 6 SGVRHTVKID-KDTLLQDYGFHISESLPLTVVAVTAGGSA-HGKLFPGDQILQMNNEPAE 63
Query: 147 AATAEEAAYELAKPADKVTVL 167
+ E A L + D +++
Sbjct: 64 DLSWERAVDILREAEDSLSIT 84
Score = 25.8 bits (57), Expect = 4.2
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 1 MRSATYQLAASVLRQCGNSITMLVQ 25
+++ A +LR+ +S+++ V
Sbjct: 62 AEDLSWERAVDILREAEDSLSITVV 86
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 47.5 bits (113), Expect = 8e-08
Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 6/84 (7%)
Query: 87 SGEPRFLMIETRKCSN-LGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
+ I K G ++ G V + GL+ GD I E ++
Sbjct: 8 KKAGLLVTIPLIKGPKGFGFAIADS-PTGQKVKMILDSQW--CQGLQKGDIIKEIYHQNV 64
Query: 146 RAATAEEAAYEL--AKPADKVTVL 167
+ T + L V +L
Sbjct: 65 QNLTHLQVVEVLKQFPVGADVPLL 88
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 47.0 bits (112), Expect = 1e-07
Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 9/86 (10%)
Query: 89 EPRFLMIETRKCSN-LGISLVGG------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEY 140
P ++E K LG S++ I + S+ + + +G L GDR++
Sbjct: 13 SPEVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSV 72
Query: 141 NGTDLRAATAEEAAYEL-AKPADKVT 165
N L + EA L A P V
Sbjct: 73 NEYCLDNTSLAEAVEILKAVPPGLVH 98
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 47.3 bits (112), Expect = 1e-07
Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 16/117 (13%)
Query: 67 SSIQHNTSTLTRTHVCKDERSG--EPRFLMIETRKCSNLGISLVGG-------------- 110
SS H+ + + + ++++ + G L G
Sbjct: 3 SSHHHHHHSQDPLVPRGSGSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPA 62
Query: 111 NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
Y+ SV G + + AGLR GD ++E NG ++ + + + + + V
Sbjct: 63 FPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK 119
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A {Homo
sapiens}
Length = 95
Score = 46.3 bits (110), Expect = 1e-07
Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 88 GEPRFLMIETRKCSN-LGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL 145
G + + K + LG+++ ++ ++ G + S + GD I NG ++
Sbjct: 4 GIEK--EVNVYKSEDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENI 61
Query: 146 RAATAEEAAYELAKPADKVTV 166
+ A +L + +
Sbjct: 62 VGWRHYDVAKKLKELKKEELF 82
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 46.2 bits (110), Expect = 1e-07
Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 9/87 (10%)
Query: 90 PRFLMIETRKCSNLGISLVGG---------NAVGIYVHSVQSGSLGYSAGLRTGDRILEY 140
R ++ G SL V V SV+ GS AGLR GD I
Sbjct: 2 MRPPIVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHI 61
Query: 141 NGTDLRAATAEEAAYELAKPADKVTVL 167
NG + + L K +K+++
Sbjct: 62 NGESVLGLVHMDVVELLLKSGNKISLR 88
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 46.8 bits (111), Expect = 1e-07
Identities = 13/83 (15%), Positives = 32/83 (38%), Gaps = 4/83 (4%)
Query: 87 SGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSA--GLRTGDRILEYNG 142
+ ++ + G ++ GG + + V V G+ L GD+++ NG
Sbjct: 13 HDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLING 72
Query: 143 TDLRAATAEEAAYELAKPADKVT 165
D+ T ++ + ++ +
Sbjct: 73 RDIAEHTHDQVVLFIKASCERHS 95
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 100
Score = 46.2 bits (110), Expect = 2e-07
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 84 DERSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSL-GYSAGLRTGDRILEY 140
G +++ ++ + + G +L GG + + V ++ G S +RTGD ++
Sbjct: 4 GSSGGSFQYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNI 63
Query: 141 NGTDLRAATAE 151
NGT L + E
Sbjct: 64 NGTPLYGSRQE 74
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper
chaperone for superoxide dismutase, neuronal adaptor,
protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 90
Score = 45.9 bits (109), Expect = 2e-07
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 103 LGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPAD 162
LG S+ G + S+ G + G+R G RI+E NG + A E+ + L+
Sbjct: 26 LGFSVQNG-----IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVG 80
Query: 163 KVTVL 167
++ +
Sbjct: 81 EIHMK 85
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 46.5 bits (110), Expect = 2e-07
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
I+V V+ G + AGL TGDRI++ NG + T + + + +
Sbjct: 62 TIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELS 115
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large
homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 43.6 bits (103), Expect = 1e-06
Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 5/84 (5%)
Query: 87 SGEPRFLMIETRKCSN--LGISLVGGNAVGIYVHSVQSGSLGY-SAGLRTGDRILEYNGT 143
S M+ RK + LG++ + + + G + L GD I E NG
Sbjct: 2 SSGSSGRMVGIRKTAGEHLGVTFRVEGG-ELVIARILHGGMVAQQGLLHVGDIIKEVNGQ 60
Query: 144 DLRAATAEEAAYELAKPADKVTVL 167
+ + L + V +
Sbjct: 61 PVG-SDPRALQELLRNASGSVILK 83
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 45.0 bits (105), Expect = 4e-06
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 108 VGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
+ G+ V +V Y AGL GD+I+ + + + P D VT+
Sbjct: 491 YKASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQATEQSVKRILERY-IPGDTVTIH 549
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 41.5 bits (98), Expect = 8e-06
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166
GIY SV + GD+I+ +G + ++A K DKVT+
Sbjct: 2 GIYASSVVENM-PAKGKIEVGDKIISADGKNYQSAEKLIDYISSKKAGDKVTL 53
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics,
PSI, protein structure initiative; 2.00A {Mycobacterium
tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Length = 324
Score = 43.8 bits (104), Expect = 9e-06
Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 103 LGISLVGGN-AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPA 161
LG+ + +G + V +G +AG+ G + + + + +A A AA P
Sbjct: 231 LGVQVTNDKDTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSADALVAAVRSKAPG 290
Query: 162 DKVTV 166
V +
Sbjct: 291 ATVAL 295
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 41.5 bits (98), Expect = 9e-06
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTV 166
G+YV SV + L GDRI +G + T+E+ + + D+V V
Sbjct: 6 GVYVMSVLPNM-PAAGRLEAGDRIAAIDGQPIN--TSEQIVSYVREKQAGDRVRV 57
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 41.0 bits (97), Expect = 2e-05
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 13/59 (22%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGT------DLRAATAEEAAYELAKPADKVTV 166
G+ V SVQS + L D I + + DL++A D + +
Sbjct: 58 GVIVRSVQSNM-PANGHLEKYDVITKVDDKEIASSTDLQSALYN------HSIGDTIKI 109
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid
module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Length = 113
Score = 40.8 bits (96), Expect = 2e-05
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166
G+ +H V GS + AGLR GD IL ++ A E YE + ++ V
Sbjct: 36 GVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA---EDVYEAVRTQSQLAV 85
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 40.0 bits (94), Expect = 5e-05
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
GIYV V S G++ GD I++ NG L ++ + A P + V
Sbjct: 36 GIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDSSELQEAVLTESPL-LLEVR 88
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 40.7 bits (96), Expect = 8e-05
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166
G+ +H V GS + AGLR GD IL ++ A YE + ++ V
Sbjct: 257 GVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAE---DVYEAVRTQSQLAV 306
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane
protein; 1.65A {Homo sapiens}
Length = 209
Score = 40.5 bits (94), Expect = 8e-05
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 101 SNLGISLVGGNAVGIYVHSVQSGSLGYSAGLR-TGDRILEYNGTDLRAATAEEAAYELAK 159
S+ + + GG G +V VQ S G+ AGL D I+ NG+ L A
Sbjct: 4 SSQSVEIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKAN 63
Query: 160 PADKVTVLAHSD 171
V +L +S
Sbjct: 64 VEKPVKMLIYSS 75
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 39.1 bits (91), Expect = 1e-04
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166
G+ + SV GS L G I NG T AA + + + +
Sbjct: 26 GVQIDSVVPGSPASKV-LTPGLVIESINGMPTSNLTTYSAALKTISVGEVINI 77
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes} PDB:
2kjk_A 3i1e_A
Length = 100
Score = 38.1 bits (89), Expect = 2e-04
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166
G+YV SV+ L GD I E +G +++ K D V +
Sbjct: 8 GVYVMSVKDDVPAADV-LHAGDLITEIDGNAFKSSQEFIDYIHSKKVGDTVKI 59
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 38.8 bits (91), Expect = 4e-04
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAAT 149
G Y+ V + + GL+ D I+ NG + +A
Sbjct: 255 GAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSAN 290
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein,
PDZ domain, hydrolase, inner membrane, membrane,
metal-binding; HET: MLY MSE; 0.98A {Escherichia coli}
PDB: 3id2_A 3id3_A 3id4_A
Length = 91
Score = 35.9 bits (83), Expect = 9e-04
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 117 VHSVQSGSLGYSAGLRTGDRILEYNGTDLR 146
+ +VQ S AGL+ GDRI+ +G L
Sbjct: 8 LENVQPNSAASXAGLQAGDRIVXVDGQPLT 37
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 37.2 bits (85), Expect = 0.001
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 11/75 (14%)
Query: 103 LGISLVGG----------NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEE 152
LG S+ GG + GI+V VQ L+ GD+I++ NG +
Sbjct: 4 LGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQ 62
Query: 153 AAYELAKPADKVTVL 167
A L + V ++
Sbjct: 63 AVSLLKTFQNTVELI 77
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell
membrane, membrane, metal-binding, metalloprotease,
transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Length = 95
Score = 35.3 bits (81), Expect = 0.001
Identities = 7/50 (14%), Positives = 16/50 (32%)
Query: 117 VHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166
V + + S+ A + G + +G + A + T+
Sbjct: 6 VGEIAANSIAAEAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTI 55
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 37.3 bits (87), Expect = 0.001
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 111 NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166
G +V V GS AG++ GD I NG L + + +P KV +
Sbjct: 261 VQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKL 316
Score = 36.9 bits (86), Expect = 0.002
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 5/85 (5%)
Query: 83 KDERSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNG 142
S E +E S+ + GI + V GS AGL+ D I+ N
Sbjct: 336 SSSASAEMITPALEGATLSDGQLK---DGGKGIKIDEVVKGSPAAQAGLQKDDVIIGVNR 392
Query: 143 TDLRAATAEEAAYELAKPADKVTVL 167
+ + E LA + +
Sbjct: 393 DRVN--SIAEMRKVLAAKPAIIALQ 415
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 37.1 bits (86), Expect = 0.002
Identities = 14/59 (23%), Positives = 19/59 (32%)
Query: 102 NLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKP 160
L L A + V GS AGL+ G I+ NG + E +
Sbjct: 79 TLYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKVESELLQGSTRQ 137
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone,
DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Length = 345
Score = 36.8 bits (86), Expect = 0.002
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 111 NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166
G +V V GS AG++ GD I NG L + + +P KV +
Sbjct: 261 VQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKL 316
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 36.9 bits (86), Expect = 0.002
Identities = 16/56 (28%), Positives = 23/56 (41%)
Query: 111 NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166
+ G V V S AGL+ GD I + N T + AT + L + V +
Sbjct: 280 DFQGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKI 335
Score = 36.5 bits (85), Expect = 0.002
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 110 GNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGT------DLRAATAE 151
GN +G+ V S G+ AG+R GD I+ N L+ E
Sbjct: 383 GNVIGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDVKSLQTIAQE 430
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 36.9 bits (86), Expect = 0.002
Identities = 15/56 (26%), Positives = 22/56 (39%)
Query: 111 NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166
G +V V S AG++ GD I NG + + A A K+T+
Sbjct: 284 AQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTL 339
Score = 36.5 bits (85), Expect = 0.002
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
G+ V++V++G+ GL+ GD I+ N ++ E L + +
Sbjct: 384 GVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVK--NIAELRKVLDSKPSVLALN 435
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta
protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4
b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A*
1sot_A 1soz_A 1vcw_A 2r3y_A
Length = 318
Score = 36.4 bits (85), Expect = 0.002
Identities = 11/53 (20%), Positives = 20/53 (37%)
Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166
GI V+ V +AG++ D I+ + +A +P + V
Sbjct: 245 GIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPV 297
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 33.6 bits (76), Expect = 0.010
Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 91 RFLMIETRKCSNLGISLVGGNAVGIYVHSVQ-------SGSLGYSAGLRTGDRILEYNGT 143
+ + G S+ +A Y +VQ S + GDRILE NGT
Sbjct: 17 TLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGT 76
Query: 144 DLRAATAEEAAYELAKPADKVTVL 167
+R EE + + + + +L
Sbjct: 77 PVRTLRVEEVEDAIKQTSQTLQLL 100
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 34.2 bits (79), Expect = 0.013
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 103 LGI--SLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAA 154
+G+ + GG+ + V + G AG R GD I+ +GT ++ + + +
Sbjct: 87 VGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVS 140
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor,
hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Length = 348
Score = 33.4 bits (77), Expect = 0.028
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 11/64 (17%)
Query: 114 GIYVHSVQSGSLGYSAGLR-----------TGDRILEYNGTDLRAATAEEAAYELAKPAD 162
G+ V AGL+ GD I NGT + + + K D
Sbjct: 252 GVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGSDLYRILDQCKVGD 311
Query: 163 KVTV 166
+VTV
Sbjct: 312 EVTV 315
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.16
Identities = 33/172 (19%), Positives = 51/172 (29%), Gaps = 72/172 (41%)
Query: 37 SGSSSAENESVSGRGSGSPTP------------------CNS--PGTNRKSSIQ-HNTST 75
S S +S+ G P+P NS P ++ I N +
Sbjct: 318 SLPPSILEDSLEN-NEGVPSPMLSISNLTQEQVQDYVNKTNSHLP-AGKQVEISLVNGA- 374
Query: 76 LTRTHVCKDERSGEPRFLM---IETRK---CSNLGIS--------LVGGN---AVGIYVH 118
+ V SG P+ L + RK S L S L N V H
Sbjct: 375 --KNLVV----SGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH 428
Query: 119 S-------------VQSGSLGYSAG-LR-----TGDRILEYNGTDLRAATAE 151
S + ++ ++A ++ T D G+DLR +
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD------GSDLRVLSGS 474
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.21
Identities = 21/121 (17%), Positives = 35/121 (28%), Gaps = 42/121 (34%)
Query: 63 TNRKSSIQHNTSTLTRTHVCKDERSG--EP--------RFLMI-------ETRKCSNLGI 105
T R + S T TH+ D S P ++L E + +
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 106 SLVGGNAVGIYVHSVQSGSLGYSAGLRTG----DRILEYNGTDLRAATAEEAAYELAKPA 161
S++ +R G D N L T E++ + +PA
Sbjct: 331 SIIA-------------------ESIRDGLATWDNWKHVNCDKLT--TIIESSLNVLEPA 369
Query: 162 D 162
+
Sbjct: 370 E 370
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken
structural genomics/proteomics in RSGI, polxc, PHP, DRP
lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB:
3au2_A* 3au6_A* 3auo_A* 3b0y_A*
Length = 575
Score = 29.7 bits (66), Expect = 0.58
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 2 RSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAE 43
R Y AA L I + + + EL G G AE
Sbjct: 26 RVRAYHQAARTLYDLDTPIEEIAEKGKEALMELPGVGPDLAE 67
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 1.0
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 10/35 (28%)
Query: 13 LRQCGNSITMLVQYSPDKYHELEGSGSSSAENESV 47
L++ S+ + Y+ D S + A ++
Sbjct: 22 LKKLQASLKL---YADD-------SAPALAIKATM 46
>3d01_A Uncharacterized protein; protein with unknown function, structural
genomics, PSI, MCS protein structure initiative; HET:
PG5; 1.70A {Agrobacterium tumefaciens str}
Length = 165
Score = 27.9 bits (63), Expect = 1.1
Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 16/71 (22%)
Query: 94 MIETRKCSNLGISL-VGGNAVGIYVHSVQSGSLGYSAG---------LRTGDRILEYNGT 143
+IE R LG +L V YV SG+L Y +G TG + G
Sbjct: 13 VIEGR-LKELGFTLPVAAAPAANYVPFTISGNLLYVSGQLPMESGKIAVTG-LV----GR 66
Query: 144 DLRAATAEEAA 154
D+ A+A+ AA
Sbjct: 67 DVDVASAQRAA 77
>1ywh_A Urokinase plasminogen activator surface receptor; UPAR,
three-finger fold, protein-peptide complex, hydrolase;
HET: ALC NAG FUC NDG BMA MAN; 2.70A {Homo sapiens} SCOP:
g.7.1.3 g.7.1.3 g.7.1.3
Length = 313
Score = 28.4 bits (62), Expect = 1.2
Identities = 13/67 (19%), Positives = 23/67 (34%)
Query: 16 CGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGSPTPCNSPGTNRKSSIQHNTST 75
C + T L+ L +G+ +N+S RG + + C S+ H +
Sbjct: 205 CSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRGCATASMCQHAHLGDAFSMNHIDVS 264
Query: 76 LTRTHVC 82
C
Sbjct: 265 CCTKSGC 271
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein
biosynthesis, AMI tRNA synthetase, ATP-binding,
magnesium; HET: B4P LYN; 1.80A {Geobacillus
stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Length = 493
Score = 27.9 bits (63), Expect = 2.0
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 135 DRILEYNGTDLRAATAEEAAYELAK 159
D I EY G D ++E A ELAK
Sbjct: 321 DAIKEYVGVDFWRQMSDEEARELAK 345
>2otm_A Hypothetical protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, unknown function; 1.85A {Shewanella oneidensis}
SCOP: d.79.1.1
Length = 154
Score = 27.1 bits (61), Expect = 2.3
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 15/66 (22%)
Query: 99 KCSNLGISL-VGGNAVGIYVHSVQSGSLGYSAG---------LRTGDRILEYNGTDLRAA 148
+ G+ L A+G Y GS ++G L G ++ G D +
Sbjct: 9 RLVAAGLELPEVAAALGNYEPYSIVGSQLMTSGQFPYLQGKLLYQG-QL----GADYTVS 63
Query: 149 TAEEAA 154
A
Sbjct: 64 EGYAAC 69
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 26.6 bits (58), Expect = 4.9
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 153 AAYELAKPADKVTVL 167
AAY+L VTV
Sbjct: 28 AAYKLKIHGLNVTVF 42
>2fd6_U Urokinase plasminogen activator surface receptor; UPAR, ATF,
ATN-615 antibody, FAB, ternary complex, immune SY
hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo
sapiens} SCOP: g.7.1.3 g.7.1.3 g.7.1.3 PDB: 3bt2_U*
3bt1_U* 2i9b_E* 3u74_U* 3u73_U*
Length = 276
Score = 26.5 bits (57), Expect = 5.0
Identities = 12/56 (21%), Positives = 21/56 (37%)
Query: 16 CGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGSPTPCNSPGTNRKSSIQH 71
C + T L+ L +G+ +N+S RG + + C S+ H
Sbjct: 206 CSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRGCATASMCQHAHLGDAFSMNH 261
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
{Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Length = 830
Score = 26.6 bits (59), Expect = 6.1
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 9 AASVLRQCGNSITM--LVQYSPDKYHELEGSGSS 40
A ++ Q S TM +Y+ +K L G S
Sbjct: 49 APGLVFQTNPSKTMASFAKYTVEKLLSLTEDGVS 82
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication;
2.46A {Deinococcus radiodurans}
Length = 578
Score = 25.8 bits (56), Expect = 8.2
Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 2 RSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAE 43
+S Y+ AA L + + ++ + G A
Sbjct: 33 KSRAYRSAARSLEELNEETP---ELLAREFTGIPKVGKGIAA 71
>3laq_U UPAR, U-PAR, urokinase plasminogen activator surface receptor; ATF,
supar, smupar, MATF, disulfide bond, EGF-LIK hydrolase,
kringle; HET: NAG; 3.20A {Mus musculus}
Length = 277
Score = 25.7 bits (55), Expect = 9.0
Identities = 11/61 (18%), Positives = 17/61 (27%)
Query: 14 RQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGSPTPCNSPGTNRKSSIQHNT 73
C + L+ L +G N S + RG + + C N
Sbjct: 201 LGCSSEEASLINCRGPMNQCLVATGLDVLGNRSYTVRGCATASWCQGSHVADSFPTHLNV 260
Query: 74 S 74
S
Sbjct: 261 S 261
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.125 0.352
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,412,690
Number of extensions: 130964
Number of successful extensions: 594
Number of sequences better than 10.0: 1
Number of HSP's gapped: 518
Number of HSP's successfully gapped: 285
Length of query: 173
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 86
Effective length of database: 4,272,666
Effective search space: 367449276
Effective search space used: 367449276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)