BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7777
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|B Chain B, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|C Chain C, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1SCZ|A Chain A, Improved Structural Model For The Catalytic Domain Of
E.Coli Dihydrolipoamide Succinyltransferase
pdb|1E2O|A Chain A, Catalytic Domain From Dihydrolipoamide Succinyltransferase
Length = 233
Score = 179 bits (453), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 108/249 (43%), Positives = 144/249 (57%), Gaps = 52/249 (20%)
Query: 76 RSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAPCNGIIEERFV 135
RSE+RV M R+R+R+A+RL EA+N AMLTTFNE++M+ M + E+R
Sbjct: 2 RSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKP----IMDLRKQYGEAFEKRH- 56
Query: 136 EDGATVKAGQQLFKIKPTVCTPNSKYRAEKKLRPGRELNSGPP--------ECKPSVAVA 187
++ G F +K V + L+ E+N+ S+AV+
Sbjct: 57 ----GIRLGFMSFYVKAVV----------EALKRYPEVNASIDGDDVVYHNYFDVSMAVS 102
Query: 188 TPKGLVVPVIRN------------------------LAIEDSDGGTFTISNGGVFGSLLG 223
TP+GLV PV+R+ L +ED GG FTI+NGGVFGSL+
Sbjct: 103 TPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMS 162
Query: 224 TPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKIKAA 283
TPIINPPQSAILGMH +RP+A+ GQV + PMMY+AL+YDHRLIDGRE+V FL IK
Sbjct: 163 TPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKEL 222
Query: 284 VEDP-RIIL 291
+EDP R++L
Sbjct: 223 LEDPTRLLL 231
>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
pdb|3MAE|B Chain B, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
pdb|3MAE|C Chain C, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
Length = 256
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 68/127 (53%), Gaps = 24/127 (18%)
Query: 183 SVAVATPKGLVVPVIRN------------------------LAIEDSDGGTFTISNGGVF 218
S+A+A L VPVI+N L+ D +GGTFT+++ G F
Sbjct: 112 SIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNSTGSF 171
Query: 219 GSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLR 278
GS+ IIN PQ+AIL + +RPV I + V+ M+ + L+ DHR++DG A FL+
Sbjct: 172 GSVQSMGIINHPQAAILQVESIVKRPVIIDDMIAVRDMVNLCLSIDHRILDGLLAGKFLQ 231
Query: 279 KIKAAVE 285
IKA VE
Sbjct: 232 AIKANVE 238
>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|B Chain B, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|C Chain C, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|D Chain D, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|E Chain E, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|F Chain F, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|G Chain G, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
Length = 224
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 106/238 (44%), Gaps = 46/238 (19%)
Query: 78 EQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAPCNGIIEERFVED 137
E+ ++M+ +R+ I ++ +A+ + T E+D+ TSM +
Sbjct: 6 EEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDV-----TSMVSILDSAKARNRKVTVT 60
Query: 138 GATVKAGQQLFKIKPTVCTPNSKYRAEKKLRPGRELNSGPPECKPSVAVATPKGLVVPVI 197
G + + K P + + R L+ + N G +AV TP GL V VI
Sbjct: 61 GFLARIVPSILKQYPYLNAIYDETRRVYILK--KYYNIG-------IAVDTPDGLNVFVI 111
Query: 198 RN------------------------LAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSA 233
++ L +++ TFTI+N G G ++ TPIIN P+ A
Sbjct: 112 KDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITNVGTIGGIMSTPIINYPEVA 171
Query: 234 ILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKIKAAVEDPRIIL 291
ILG+H ER +G + MY++L+ DHRLIDG A F+ +K +EDP I+
Sbjct: 172 ILGVHRILER----EG----RKYMYLSLSCDHRLIDGAVATRFIVDLKKVIEDPNAII 221
>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid
Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis
Length = 250
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 24/132 (18%)
Query: 187 ATPKGLVVPVI--------RNLAIEDSD----------------GGTFTISNGGVFGSLL 222
AT +GL+VPV+ R LA ++ G TFT+SN G G
Sbjct: 111 ATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSNFGALGVDD 170
Query: 223 GTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKIKA 282
G P+IN P++AILG+ RPV + G+VV +P M + +DHR++DG + F+ +++
Sbjct: 171 GVPVINHPEAAILGLGAIKPRPVVVGGEVVARPTMTLTCVFDHRVVDGAQVAQFMCELRD 230
Query: 283 AVEDPRIILAGL 294
+E P L L
Sbjct: 231 LIESPETALLDL 242
>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|B Chain B, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|C Chain C, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|D Chain D, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|E Chain E, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
Length = 242
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 70/132 (53%), Gaps = 24/132 (18%)
Query: 184 VAVATPKGLVVPVIRN--------LAIE----------------DSDGGTFTISNGGVFG 219
+A T +GL+VPVI++ LA E + G + TI+N G G
Sbjct: 110 IAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAG 169
Query: 220 SLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRK 279
TP+IN P+ AILG+ E+P+ G++V PM+ ++L++DHR+IDG A L
Sbjct: 170 GQWFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDHRMIDGATAQKALNH 229
Query: 280 IKAAVEDPRIIL 291
IK + DP ++L
Sbjct: 230 IKRLLSDPELLL 241
>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 428
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 71/132 (53%), Gaps = 24/132 (18%)
Query: 184 VAVATPKGLVVPVIRN--------LAIEDSD----------------GGTFTISNGGVFG 219
+A T +GL+VPVI++ LA E ++ G + TI+N G G
Sbjct: 294 IAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAG 353
Query: 220 SLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRK 279
TP+IN P+ AILG+ E+P+ G++V PM+ ++L++DHR+IDG A L
Sbjct: 354 GQWFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDHRMIDGATAQKALNH 413
Query: 280 IKAAVEDPRIIL 291
IK + DP ++L
Sbjct: 414 IKRLLSDPELLL 425
>pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 63/131 (48%), Gaps = 24/131 (18%)
Query: 185 AVATPKGLVVPVIRN------------------------LAIEDSDGGTFTISNGGVFGS 220
AV TP GL+VPVIRN L + G FTIS+ G G
Sbjct: 112 AVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGG 171
Query: 221 LLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKI 280
TPI+N P+ AILG+ +PV + M+ ++L+YDHR+IDG A F +++
Sbjct: 172 TAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDHRVIDGAAAARFTKRL 231
Query: 281 KAAVEDPRIIL 291
+ D R IL
Sbjct: 232 GDLLADIRAIL 242
>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl
Acetyltransferase (E2)
Length = 239
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 26/135 (19%)
Query: 183 SVAVATPKGLVVPVIRNLAI------------------------EDSDGGTFTISNGGVF 218
SVAV+TP GL+ P++ N I + GGTFTISN G+F
Sbjct: 104 SVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNLGMF 163
Query: 219 GSLLGTPIINPPQSAILGMHGTFERPVAIKGQ--VVVKPMMYVALTYDHRLIDGREAVLF 276
G + IINPPQ+ IL + + ++ V + V MM V L+ DHR++DG +
Sbjct: 164 GIKNFSAIINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVGAQW 223
Query: 277 LRKIKAAVEDPRIIL 291
L + + +E P +L
Sbjct: 224 LAEFRKYLEKPITML 238
>pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAB|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAC|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAD|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAE|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAF|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
Length = 243
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 63/131 (48%), Gaps = 24/131 (18%)
Query: 185 AVATPKGLVVPVIRN------------------------LAIEDSDGGTFTISNGGVFGS 220
AV TP GL+VPVIRN L + G FTIS+ G G
Sbjct: 112 AVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGG 171
Query: 221 LLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKI 280
TPI+N P+ AILG+ +PV + M+ ++L+YDHR+I+G A F +++
Sbjct: 172 TAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDHRVINGAAAARFTKRL 231
Query: 281 KAAVEDPRIIL 291
+ D R IL
Sbjct: 232 GDLLADIRAIL 242
>pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 63/131 (48%), Gaps = 24/131 (18%)
Query: 185 AVATPKGLVVPVIRN------------------------LAIEDSDGGTFTISNGGVFGS 220
AV TP GL+VPVIRN L + G FTI++ G G
Sbjct: 112 AVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTIASLGHIGG 171
Query: 221 LLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKI 280
TPI+N P+ AILG+ +PV + M+ ++L+YDHR+I+G A F +++
Sbjct: 172 TAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDHRVINGAAAARFTKRL 231
Query: 281 KAAVEDPRIIL 291
+ D R IL
Sbjct: 232 GDLLADIRAIL 242
>pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 62/131 (47%), Gaps = 24/131 (18%)
Query: 185 AVATPKGLVVPVIRN------------------------LAIEDSDGGTFTISNGGVFGS 220
AV TP GL+VPVIRN L + G FTIS+ G G
Sbjct: 112 AVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHIGG 171
Query: 221 LLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKI 280
TPI+N P+ AILG+ +PV + M+ ++L+YD R+I+G A F +++
Sbjct: 172 TAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDCRVINGAAAARFTKRL 231
Query: 281 KAAVEDPRIIL 291
+ D R IL
Sbjct: 232 GDLLADIRAIL 242
>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2II3|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II4|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II5|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
Length = 262
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 64/137 (46%), Gaps = 27/137 (19%)
Query: 184 VAVATPKGLVVPVIRN------------------------LAIEDSDGGTFTISNGGVFG 219
+A+ T +GL+VP ++N L+ D GGTFT+SN G G
Sbjct: 126 IAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSNIGSIG 185
Query: 220 SLLGTPIINPPQSAILGMHGTFERPVAI--KGQVVVKPMMYVALTYDHRLIDGREAVLFL 277
P+I PP+ AI G GT + KG+V +M V+ + DHR+IDG F
Sbjct: 186 GTYAKPVILPPEVAI-GALGTIKALPRFNEKGEVCKAQIMNVSWSADHRIIDGATVSRFS 244
Query: 278 RKIKAAVEDPRIILAGL 294
K+ +E+P +L L
Sbjct: 245 NLWKSYLENPAFMLLDL 261
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
pdb|2XT6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Alpha-Ketoglutarate Decarboxylase Homodimer
(Orthorhombic Form)
Length = 1113
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 200 LAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKG-------QVV 252
L ED G T +++N G G++ P + Q AI+G G E P +G +
Sbjct: 129 LTAEDFSGVTISLTNPGTLGTVHSVPRLMQGQGAIIGA-GAMEYPAEFQGASEERIADLG 187
Query: 253 VKPMMYVALTYDHRLIDGREAVLFLRKIKAAVED 286
+ ++ + TYDHR+I G E+ FLR I + D
Sbjct: 188 IGKLITLTSTYDHRIIQGAESGDFLRTIHQLLLD 221
>pdb|2V4D|A Chain A, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|B Chain B, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|C Chain C, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|D Chain D, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|E Chain E, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|F Chain F, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|G Chain G, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|H Chain H, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|I Chain I, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|J Chain J, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|K Chain K, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|L Chain L, Re-Refinement Of Mexa Adaptor Protein
pdb|2V4D|M Chain M, Re-Refinement Of Mexa Adaptor Protein
Length = 360
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 126 CNGIIEERFVEDGATVKAGQQLFKIKPTVCTPNSKYRA 163
NGII +R ++G+ VKAGQQL++I P T + Y++
Sbjct: 47 VNGIILKRLFKEGSDVKAGQQLYQIDP--ATYEADYQS 82
>pdb|1VF7|A Chain A, Crystal Structure Of The Membrane Fusion Protein, Mexa Of
The Multidrug Transporter
pdb|1VF7|B Chain B, Crystal Structure Of The Membrane Fusion Protein, Mexa Of
The Multidrug Transporter
pdb|1VF7|C Chain C, Crystal Structure Of The Membrane Fusion Protein, Mexa Of
The Multidrug Transporter
pdb|1VF7|D Chain D, Crystal Structure Of The Membrane Fusion Protein, Mexa Of
The Multidrug Transporter
pdb|1VF7|E Chain E, Crystal Structure Of The Membrane Fusion Protein, Mexa Of
The Multidrug Transporter
pdb|1VF7|F Chain F, Crystal Structure Of The Membrane Fusion Protein, Mexa Of
The Multidrug Transporter
pdb|1VF7|G Chain G, Crystal Structure Of The Membrane Fusion Protein, Mexa Of
The Multidrug Transporter
pdb|1VF7|H Chain H, Crystal Structure Of The Membrane Fusion Protein, Mexa Of
The Multidrug Transporter
pdb|1VF7|I Chain I, Crystal Structure Of The Membrane Fusion Protein, Mexa Of
The Multidrug Transporter
pdb|1VF7|J Chain J, Crystal Structure Of The Membrane Fusion Protein, Mexa Of
The Multidrug Transporter
pdb|1VF7|K Chain K, Crystal Structure Of The Membrane Fusion Protein, Mexa Of
The Multidrug Transporter
pdb|1VF7|L Chain L, Crystal Structure Of The Membrane Fusion Protein, Mexa Of
The Multidrug Transporter
pdb|1VF7|M Chain M, Crystal Structure Of The Membrane Fusion Protein, Mexa Of
The Multidrug Transporter
Length = 369
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 126 CNGIIEERFVEDGATVKAGQQLFKIKPTVCTPNSKYRA 163
NGII +R ++G+ VKAGQQL++I P T + Y++
Sbjct: 50 VNGIILKRLFKEGSDVKAGQQLYQIDP--ATYEADYQS 85
>pdb|1T5E|A Chain A, The Structure Of Mexa
pdb|1T5E|B Chain B, The Structure Of Mexa
pdb|1T5E|C Chain C, The Structure Of Mexa
pdb|1T5E|D Chain D, The Structure Of Mexa
pdb|1T5E|E Chain E, The Structure Of Mexa
pdb|1T5E|F Chain F, The Structure Of Mexa
pdb|1T5E|G Chain G, The Structure Of Mexa
pdb|1T5E|H Chain H, The Structure Of Mexa
pdb|1T5E|I Chain I, The Structure Of Mexa
pdb|1T5E|J Chain J, The Structure Of Mexa
pdb|1T5E|K Chain K, The Structure Of Mexa
pdb|1T5E|L Chain L, The Structure Of Mexa
pdb|1T5E|M Chain M, The Structure Of Mexa
Length = 360
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 126 CNGIIEERFVEDGATVKAGQQLFKIKPTVCTPNSKYRA 163
NGII +R ++G+ VKAGQQL++I P T + Y++
Sbjct: 47 VNGIILKRLFKEGSDVKAGQQLYQIDP--ATYEADYQS 82
>pdb|1O78|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (1.3s)
[10-48] Deletion Mutant
Length = 84
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 122 VPAPCNGIIEERFVEDGATVKAGQQLF 148
+PAP G + + V++G TVKAGQ +
Sbjct: 18 IPAPLAGTVSKILVKEGDTVKAGQTVL 44
>pdb|1DCZ|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (Tc
1.3s)
pdb|1DD2|A Chain A, Biotin Carboxyl Carrier Domain Of Transcarboxylase (Tc
1.3s)
Length = 77
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 122 VPAPCNGIIEERFVEDGATVKAGQQLF 148
+PAP G + + V++G TVKAGQ +
Sbjct: 11 IPAPLAGTVSKILVKEGDTVKAGQTVL 37
>pdb|2EJM|A Chain A, Solution Structure Of Ruh-072, An Apo-Biotnyl Domain Form
Human Acetyl Coenzyme A Carboxylase
Length = 99
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 124 APCNGIIEERFVEDGATVKAGQQL-----FKIKPTVCTPNSKYRAEKKLRPGRELNSGPP 178
AP G IE+ FV+ G VKAG L K++ T+ +P + R G + N P
Sbjct: 19 APMTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHTP 78
>pdb|3ZLI|A Chain A, Crystal Structure Of Jmjc Domain Of Human Histone
Demethylase Uty
pdb|3ZLI|B Chain B, Crystal Structure Of Jmjc Domain Of Human Histone
Demethylase Uty
Length = 478
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 2 RAIEAATVKLPPADPTKEISGTRSEQRVKMNRNGRNLQKRSKYRQS 47
+E T L PAD + +GT+ R + NR+ + K ++Y+ S
Sbjct: 67 HMVEVRTQLLQPADENWDPTGTKKIWRCESNRSHTTIAKYAQYQAS 112
>pdb|2D5D|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii
pdb|2D5D|B Chain B, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form Ii
pdb|2EVB|A Chain A, Structure Of Biotin Carboxyl Carrier Protein (74val Start)
From Pyrococcus Horikoshi Ot3 Ligand Free Form I
pdb|2EJF|C Chain C, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJF|D Chain D, Crystal Structure Of The Biotin Protein Ligase (Mutations
R48a And K111a) And Biotin Carboxyl Carrier Protein
Complex From Pyrococcus Horikoshii Ot3
pdb|2EJG|C Chain C, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
pdb|2EJG|D Chain D, Crystal Structure Of The Biotin Protein Ligase (Mutation
R48a) And Biotin Carboxyl Carrier Protein Complex From
Pyrococcus Horikoshii Ot3
Length = 74
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 82 KMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAPCNGIIEERFVEDGATV 141
K+ R+ R+ R++ Q L + M E +P+P +G+++ V++G V
Sbjct: 15 KVLRVLVRVGDRVRVGQG----LLVLEAMKMENE------IPSPRDGVVKRILVKEGEAV 64
Query: 142 KAGQQLFKI 150
GQ L ++
Sbjct: 65 DTGQPLIEL 73
>pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer
Length = 419
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 54 NAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTT 106
+A+ +K ++ KE+ R E RVK + ++++++ K+A+N A L +
Sbjct: 32 DALSDLEIKDSKSNLNKELETLREENRVKSDMLKEKLS---KDAENHKAYLKS 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,305,396
Number of Sequences: 62578
Number of extensions: 339071
Number of successful extensions: 691
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 652
Number of HSP's gapped (non-prelim): 27
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)