Query psy7777
Match_columns 294
No_of_seqs 211 out of 1252
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 18:37:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7777.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7777hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14843 dihydrolipoamide acet 100.0 5.5E-61 1.2E-65 458.9 17.7 260 17-292 46-347 (347)
2 PRK11857 dihydrolipoamide acet 100.0 7.7E-60 1.7E-64 444.3 18.6 202 78-292 76-305 (306)
3 PRK05704 dihydrolipoamide succ 100.0 5.9E-59 1.3E-63 453.4 19.6 253 20-294 113-407 (407)
4 TIGR01347 sucB 2-oxoglutarate 100.0 8E-59 1.7E-63 451.8 19.3 252 19-294 110-403 (403)
5 PF00198 2-oxoacid_dh: 2-oxoac 100.0 2.7E-58 5.9E-63 418.6 15.8 202 76-292 2-231 (231)
6 TIGR02927 SucB_Actino 2-oxoglu 100.0 4.1E-58 8.8E-63 465.5 17.8 258 19-290 276-585 (590)
7 TIGR01349 PDHac_trf_mito pyruv 100.0 1.3E-57 2.9E-62 447.3 18.1 255 19-292 138-435 (435)
8 PLN02528 2-oxoisovalerate dehy 100.0 1.8E-57 3.8E-62 444.2 18.0 203 78-294 185-415 (416)
9 TIGR01348 PDHac_trf_long pyruv 100.0 4.6E-57 9.9E-62 454.4 19.5 202 78-292 318-546 (546)
10 PLN02744 dihydrolipoyllysine-r 100.0 3.9E-57 8.4E-62 451.4 17.4 251 19-292 248-539 (539)
11 PLN02226 2-oxoglutarate dehydr 100.0 3.3E-57 7.2E-62 444.2 15.7 202 78-294 234-463 (463)
12 PTZ00144 dihydrolipoamide succ 100.0 7.5E-57 1.6E-61 438.3 15.8 202 78-294 189-418 (418)
13 PRK11854 aceF pyruvate dehydro 100.0 7.8E-54 1.7E-58 437.6 20.7 202 78-292 403-633 (633)
14 KOG0559|consensus 100.0 1.6E-53 3.6E-58 398.9 11.6 206 74-294 224-457 (457)
15 PRK11855 dihydrolipoamide acet 100.0 5.1E-52 1.1E-56 418.3 19.8 202 78-292 319-547 (547)
16 PRK11856 branched-chain alpha- 100.0 2.6E-51 5.7E-56 400.1 21.1 252 20-293 125-411 (411)
17 COG0508 AceF Pyruvate/2-oxoglu 100.0 2.6E-51 5.7E-56 399.4 14.4 257 18-293 111-404 (404)
18 KOG0557|consensus 100.0 8.7E-50 1.9E-54 384.9 9.9 256 17-292 171-470 (470)
19 KOG0558|consensus 100.0 1.1E-47 2.4E-52 358.4 9.9 260 20-294 171-473 (474)
20 PRK12270 kgd alpha-ketoglutara 100.0 3.8E-45 8.1E-50 376.1 12.6 196 77-285 114-349 (1228)
21 PRK13757 chloramphenicol acety 99.8 1.4E-19 3E-24 163.6 13.7 164 87-286 18-214 (219)
22 PF00302 CAT: Chloramphenicol 99.8 3.4E-19 7.4E-24 159.8 14.5 149 100-281 24-206 (206)
23 COG4845 Chloramphenicol O-acet 99.5 2.8E-13 6E-18 119.9 11.6 158 100-289 27-216 (219)
24 KOG0559|consensus 91.9 0.062 1.3E-06 52.2 0.8 41 8-48 210-250 (457)
25 PF02817 E3_binding: e3 bindin 67.4 2.1 4.5E-05 28.5 0.4 23 18-41 1-23 (39)
26 PF02458 Transferase: Transfer 66.0 8.2 0.00018 37.4 4.3 31 257-287 147-177 (432)
27 PLN00140 alcohol acetyltransfe 64.5 7.7 0.00017 38.5 3.9 30 257-286 148-177 (444)
28 PLN02663 hydroxycinnamoyl-CoA: 63.9 7.9 0.00017 38.0 3.8 30 257-286 145-174 (431)
29 PLN02481 Omega-hydroxypalmitat 59.1 11 0.00024 37.2 3.9 30 257-286 158-187 (436)
30 PF07247 AATase: Alcohol acety 58.6 11 0.00023 37.5 3.7 32 256-287 140-171 (480)
31 PLN03157 spermidine hydroxycin 55.5 13 0.00029 36.7 3.8 30 257-286 146-175 (447)
32 PF07247 AATase: Alcohol acety 54.1 27 0.00059 34.6 5.7 68 207-284 403-480 (480)
33 TIGR02946 acyl_WS_DGAT acyltra 53.8 31 0.00066 33.7 6.0 30 256-287 413-442 (446)
34 PF00668 Condensation: Condens 40.5 32 0.0007 30.4 3.5 32 257-288 129-160 (301)
35 PF07687 M20_dimer: Peptidase 34.5 38 0.00083 25.9 2.7 29 259-287 79-107 (111)
36 PRK09294 acyltransferase PapA5 20.1 88 0.0019 30.3 2.8 26 259-284 113-138 (416)
No 1
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=100.00 E-value=5.5e-61 Score=458.94 Aligned_cols=260 Identities=28% Similarity=0.384 Sum_probs=207.4
Q ss_pred CCCCcCCccchhhccccCCcchhhh--------------hhhhhhcCCcccchhhhcccCCCCCCCCCcCCCCCcceEee
Q psy7777 17 TKEISGTRSEQRVKMNRNGRNLQKR--------------SKYRQSQQPSQLNAIEAATVKLPPADPTKEISGTRSEQRVK 82 (294)
Q Consensus 17 ~~~~~~t~~~~~~~~~~~g~~l~~v--------------~k~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp 82 (294)
.-++.+||..+|. +.+.||||..+ ..|....+.....+ ++++...+...+. .....+.++++|
T Consensus 46 ~~~~~asP~aR~l-A~e~gidl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~v~ 122 (347)
T PRK14843 46 TNVVRISPLAKRI-ALEHNIAWQEIQGTGHRGKIMKKDVLALLPENIENDSIK-SPAQIEKVEEVPD-NVTPYGEIERIP 122 (347)
T ss_pred cccccCCchhhHH-HHHcCCCHhhCCCCCCCCcccHHHHHHHHhccccCcccc-CCCCCccccCCCc-ccccCCcceeee
Confidence 4455699999999 99999999773 23321111000000 0000000000000 001112356789
Q ss_pred CcHHHHHHHHHHHHhhccCcEEEEEEEEeeccccccCCCCCCCcchhhhh----hccccCceehhHHHhhhcCCccccCC
Q psy7777 83 MNRMRQRIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAPCNGIIEE----RFVEDGATVKAGQQLFKIKPTVCTPN 158 (294)
Q Consensus 83 ~s~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~~~~~r~~~n~l~~~----~~~~~~~~ikAva~Al~~~P~l~~~N 158 (294)
+++|||.||++|++||+++||||++.|||+|+|.++ |.+++....+ +++..+|++||++.||++||.| |
T Consensus 123 l~~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~----r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~---N 195 (347)
T PRK14843 123 MTPMRKVIAQRMVESYLTAPTFTLNYEVDMTEMLAL----RKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYI---N 195 (347)
T ss_pred CcHHHHHHHHHHHHHHhhCCeEEEEEEEEchHHHHH----HHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcce---e
Confidence 999999999999999999999999999999997653 3333321111 2333468999999999999999 9
Q ss_pred ceeecccccCCCCeeEeCCCCCceEEEEecCCCeEEeeecC------------------------CCCCCCCCCeeEEee
Q psy7777 159 SKYRAEKKLRPGRELNSGPPECKPSVAVATPKGLVVPVIRN------------------------LAIEDSDGGTFTISN 214 (294)
Q Consensus 159 ~~~~~~~~~~~~~~i~~~~~~vnigvAV~t~~GL~vPvi~d------------------------L~~~d~~ggTftISN 214 (294)
++|+ ++++.+++ ++++||||||++++||+||||+| |+++||+||||||||
T Consensus 196 a~~~-----~~~~~i~~-~~~vnigvAV~~~~GL~vPVIr~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~d~~GgTfTISN 269 (347)
T PRK14843 196 ASLT-----EDGKTIIT-HNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISN 269 (347)
T ss_pred EEEe-----cCCCeEEE-ecccceEEEEecCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeC
Confidence 9998 33567999 99999999999999999999998 999999999999999
Q ss_pred cCCCCCCCceeccCCCCceEEEeeceeeeEEEeCCeEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhhCHHHhhc
Q psy7777 215 GGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKIKAAVEDPRIILA 292 (294)
Q Consensus 215 lG~~G~~~ftpii~~Pq~ail~vG~i~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~lll 292 (294)
+|+||+++|+|||||||+||||+|+++++|++.||++++|++|+||||||||+|||+++|+||++|+++||+|..||+
T Consensus 270 lG~~G~~~~tpIInpPq~aIlgvG~i~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~ll~ 347 (347)
T PRK14843 270 LGMFGVQSFGPIINQPNSAILGVSSTIEKPVVVNGEIVIRPIMSLGLTIDHRVVDGMAGAKFMKDLKELIETPISMLI 347 (347)
T ss_pred CCCCcccceeccccCCceEEEecCCcceeeEEECCeEEEEeEEEEEEecchhhhCcHHHHHHHHHHHHHhcCHHHhhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998874
No 2
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=7.7e-60 Score=444.29 Aligned_cols=202 Identities=32% Similarity=0.460 Sum_probs=182.1
Q ss_pred ceEeeCcHHHHHHHHHHHHhhccCcEEEEEEEEeeccccccCCCCCCCcchhhhh----hccccCceehhHHHhhhcCCc
Q psy7777 78 EQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAPCNGIIEE----RFVEDGATVKAGQQLFKIKPT 153 (294)
Q Consensus 78 ~~~vp~s~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~~~~~r~~~n~l~~~----~~~~~~~~ikAva~Al~~~P~ 153 (294)
.+++|+++||+.||++|++|++++|||+++.|||+|+|+++ |.+++....+ ++...+|++||+++||++||.
T Consensus 76 ~~~~~ls~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~----r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~ 151 (306)
T PRK11857 76 GKREKVAPIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDL----RKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPI 151 (306)
T ss_pred ceeccCcHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHH----HHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcH
Confidence 46789999999999999999999999999999999997653 3333321111 122336799999999999999
Q ss_pred cccCCceeecccccCCCCeeEeCCCCCceEEEEecCCCeEEeeecC------------------------CCCCCCCCCe
Q psy7777 154 VCTPNSKYRAEKKLRPGRELNSGPPECKPSVAVATPKGLVVPVIRN------------------------LAIEDSDGGT 209 (294)
Q Consensus 154 l~~~N~~~~~~~~~~~~~~i~~~~~~vnigvAV~t~~GL~vPvi~d------------------------L~~~d~~ggT 209 (294)
+ |++|+ ++++.|++ ++++||||||++++||++|||+| |+++|++|||
T Consensus 152 ~---Na~~~-----~~~~~i~~-~~~vnigvAv~~~~GL~vPVI~~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~dl~ggT 222 (306)
T PRK11857 152 F---AAKYD-----EATSELVY-PDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGS 222 (306)
T ss_pred h---hEEEe-----CCCCEEEE-cCCccEEEEEECCCCEEeCCcCCcCcCCHHHHHHHHHHHHHHHHcCCCChhhcCCcc
Confidence 9 99998 34668999 99999999999999999999998 9999999999
Q ss_pred eEEeecCCCCCCCceeccCCCCceEEEeeceeeeEEEeCCeEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhhCHHH
Q psy7777 210 FTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKIKAAVEDPRI 289 (294)
Q Consensus 210 ftISNlG~~G~~~ftpii~~Pq~ail~vG~i~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~ 289 (294)
|||||+|++|+.+|+||||+||+||||+|+++++|++.||++++|++|+||||||||+|||+++++||++|+++||+|+.
T Consensus 223 fTISNlG~~G~~~~tpiIn~pq~aILgvG~i~~~pvv~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p~~ 302 (306)
T PRK11857 223 FTITNYGSVGSLYGVPVINYPELAIAGVGAIIDKAIVKNGQIVAGKVMHLTVAADHRWIDGATIGRFASRVKELLEKPEI 302 (306)
T ss_pred EEEeCCCCCCccceecccCCCccceeecccceEEeEEECCEEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred hhc
Q psy7777 290 ILA 292 (294)
Q Consensus 290 lll 292 (294)
|++
T Consensus 303 l~~ 305 (306)
T PRK11857 303 LGV 305 (306)
T ss_pred hhc
Confidence 664
No 3
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=100.00 E-value=5.9e-59 Score=453.38 Aligned_cols=253 Identities=46% Similarity=0.681 Sum_probs=207.6
Q ss_pred CcCCccchhhccccCCcchhh--------------hhhhhhhcCCcccchhhhcccCCCCCCCCCcCCCCCcceEeeCcH
Q psy7777 20 ISGTRSEQRVKMNRNGRNLQK--------------RSKYRQSQQPSQLNAIEAATVKLPPADPTKEISGTRSEQRVKMNR 85 (294)
Q Consensus 20 ~~~t~~~~~~~~~~~g~~l~~--------------v~k~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~ 85 (294)
+.+||.+||. |++.||||+. |.+|....+.+.. .++++...+ .+.. .+....+++|+++
T Consensus 113 ~~asP~aR~l-A~e~gidl~~v~gtG~~GrI~~~DV~~~~~~~~~~~~--~~~~~~~~~--~~~~--~~~~~~~~vpls~ 185 (407)
T PRK05704 113 DALSPAARKL-AAENGLDASAVKGTGKGGRVTKEDVLAALAAAAAAPA--APAAAAPAA--APAP--LGARPEERVPMTR 185 (407)
T ss_pred ccCCchhhhH-HhhcCCChhhCCCCCCCCcccHHHHHHHhhcccccCC--CCCCCCCcC--CCcc--ccCCcceEeeChH
Confidence 5689999999 9999999977 3344321110000 000000000 0000 0111246789999
Q ss_pred HHHHHHHHHHHhhccCcEEEEEEEEeeccccccCCCCCCCcchhhhh----hccccCceehhHHHhhhcCCccccCCcee
Q psy7777 86 MRQRIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAPCNGIIEE----RFVEDGATVKAGQQLFKIKPTVCTPNSKY 161 (294)
Q Consensus 86 ~Rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~~~~~r~~~n~l~~~----~~~~~~~~ikAva~Al~~~P~l~~~N~~~ 161 (294)
|||+||++|++||+++||||++.|||+|+|+++ |.++|....+ ++..++|++||+++||++||.| |++|
T Consensus 186 ~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~~~----r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~---Na~~ 258 (407)
T PRK05704 186 LRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDL----RKQYKDAFEKKHGVKLGFMSFFVKAVVEALKRYPEV---NASI 258 (407)
T ss_pred HHHHHHHHHHHHhhcCCeEEEEEEEeHHHHHHH----HHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHh---hcEE
Confidence 999999999999999999999999999997653 3333322211 1233468999999999999999 9999
Q ss_pred ecccccCCCCeeEeCCCCCceEEEEecCCCeEEeeecC------------------------CCCCCCCCCeeEEeecCC
Q psy7777 162 RAEKKLRPGRELNSGPPECKPSVAVATPKGLVVPVIRN------------------------LAIEDSDGGTFTISNGGV 217 (294)
Q Consensus 162 ~~~~~~~~~~~i~~~~~~vnigvAV~t~~GL~vPvi~d------------------------L~~~d~~ggTftISNlG~ 217 (294)
+ ++++++ ++++|||+||++++||++|||+| |+++|++||||||||+|+
T Consensus 259 ~-------~~~i~~-~~~~nIgiAv~~~~GLivPVI~~a~~~sl~eIa~~~~~l~~~ar~g~L~~~d~~ggTfTiSNlG~ 330 (407)
T PRK05704 259 D-------GDDIVY-HNYYDIGIAVGTPRGLVVPVLRDADQLSFAEIEKKIAELAKKARDGKLSIEELTGGTFTITNGGV 330 (407)
T ss_pred c-------CCeEEE-cCCCCeEEEEECCCceEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCChHHcCCceEEEecCCc
Confidence 9 678999 99999999999999999999998 999999999999999999
Q ss_pred CCCCCceeccCCCCceEEEeeceeeeEEEeCCeEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhhCHHHhhcCC
Q psy7777 218 FGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKIKAAVEDPRIILAGL 294 (294)
Q Consensus 218 ~G~~~ftpii~~Pq~ail~vG~i~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~lll~~ 294 (294)
||+.+|+|||||||+||||+|+++++|++.||++.+|++|+||||||||||||+++|+||++|+++||+|..||++|
T Consensus 331 ~G~~~~tpiIn~pq~aILgvG~i~~~pv~~~g~i~~r~~~~lsls~DHRviDGa~aa~Fl~~l~~~le~p~~ll~~~ 407 (407)
T PRK05704 331 FGSLMSTPIINPPQSAILGMHKIKERPVAVNGQIVIRPMMYLALSYDHRIIDGKEAVGFLVTIKELLEDPERLLLDL 407 (407)
T ss_pred ccccceeccccCCcEEEEEcccceEEeEEECCEEEEEEEEEEEEEechhhhCcHHHHHHHHHHHHHhhCHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876
No 4
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=100.00 E-value=8e-59 Score=451.84 Aligned_cols=252 Identities=50% Similarity=0.718 Sum_probs=207.3
Q ss_pred CCcCCccchhhccccCCcchhhh--------------hhhhhhcCCcccchhhhcccCCCCCCCCCcCCCCCcceEeeCc
Q psy7777 19 EISGTRSEQRVKMNRNGRNLQKR--------------SKYRQSQQPSQLNAIEAATVKLPPADPTKEISGTRSEQRVKMN 84 (294)
Q Consensus 19 ~~~~t~~~~~~~~~~~g~~l~~v--------------~k~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s 84 (294)
++.+||.+||. |++.||||..+ .+|....+.+ +. +++.. +...+ . ......+.+||+
T Consensus 110 ~~~asP~aR~l-A~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~---~~-~~~~~-~~~~~--~-~~~~~~~~~pls 180 (403)
T TIGR01347 110 RPSLSPAARRL-AKEHGIDLSAVPGTGVTGRVTKEDIIKKTEAPASA---QA-PAPAA-AAKAP--A-NFTRPEERVKMT 180 (403)
T ss_pred cccCCchhhhH-HHHcCCChhhCCCCCCCCcccHHHHHHhhhccccc---CC-CCCCc-ccCCc--c-ccCCCceEeeCc
Confidence 45689999999 99999999773 3332110000 00 00000 00000 0 001134578999
Q ss_pred HHHHHHHHHHHHhhccCcEEEEEEEEeeccccccCCCCCCCcchhhhh----hccccCceehhHHHhhhcCCccccCCce
Q psy7777 85 RMRQRIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAPCNGIIEE----RFVEDGATVKAGQQLFKIKPTVCTPNSK 160 (294)
Q Consensus 85 ~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~~~~~r~~~n~l~~~----~~~~~~~~ikAva~Al~~~P~l~~~N~~ 160 (294)
+|||+||++|++||+++||||++.++|+|+|.++ |.+++....+ ++..++|++||+++||++||.| |++
T Consensus 181 ~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~----r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~---Na~ 253 (403)
T TIGR01347 181 RLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMEL----RKRYKEEFEKKHGVKLGFMSFFVKAVVAALKRFPEV---NAE 253 (403)
T ss_pred HHHHHHHHHHHHHhccCCEEEEEEEEEHHHHHHH----HHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHh---heE
Confidence 9999999999999999999999999999997664 3333322111 1333468999999999999999 999
Q ss_pred eecccccCCCCeeEeCCCCCceEEEEecCCCeEEeeecC------------------------CCCCCCCCCeeEEeecC
Q psy7777 161 YRAEKKLRPGRELNSGPPECKPSVAVATPKGLVVPVIRN------------------------LAIEDSDGGTFTISNGG 216 (294)
Q Consensus 161 ~~~~~~~~~~~~i~~~~~~vnigvAV~t~~GL~vPvi~d------------------------L~~~d~~ggTftISNlG 216 (294)
|+ ++++++ ++++|||+||++++||++||||| |+++|++||||||||+|
T Consensus 254 ~~-------~~~i~~-~~~vnIgvAv~~~~GL~vPVIr~ad~~sl~eIa~~~~~l~~~ar~gkL~~~d~~ggTfTISNlG 325 (403)
T TIGR01347 254 ID-------GDDIVY-KDYYDISVAVSTDRGLVVPVVRNADRMSFADIEKEIADLGKKARDGKLTLEDMTGGTFTITNGG 325 (403)
T ss_pred Ec-------CCEEEE-cCCCCeEEEEECCCCeEECcCCCcccCCHHHHHHHHHHHHHHHHcCCCChhhcCCceEEEecCC
Confidence 98 678999 99999999999999999999998 99999999999999999
Q ss_pred CCCCCCceeccCCCCceEEEeeceeeeEEEeCCeEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhhCHHHhhcCC
Q psy7777 217 VFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKIKAAVEDPRIILAGL 294 (294)
Q Consensus 217 ~~G~~~ftpii~~Pq~ail~vG~i~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~lll~~ 294 (294)
+||+.+|+|||||||+||||+|+++++|++.||++.+|++|+||||||||||||+++|+||++|+++||+|..||++|
T Consensus 326 ~~G~~~~tpiin~pq~aILgvG~i~~~pv~~~g~i~~r~~m~lsLt~DHRviDGa~aa~Fl~~l~~~le~p~~ll~~~ 403 (403)
T TIGR01347 326 VFGSLMSTPIINPPQSAILGMHGIKERPVAVNGQIEIRPMMYLALSYDHRLIDGKEAVTFLVTIKELLEDPRRLLLDL 403 (403)
T ss_pred cCcccceeccccCCceEEEecccceEEEEEECCeEEEEEEEEEEEEecchhhChHHHHHHHHHHHHHhcCHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999876
No 5
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=100.00 E-value=2.7e-58 Score=418.61 Aligned_cols=202 Identities=42% Similarity=0.607 Sum_probs=169.7
Q ss_pred CcceEeeCcHHHHHHHHHHHHhhccCcEEEEEEEEeeccccccCCCCCCCcchhhhh---hccccCceehhHHHhhhcCC
Q psy7777 76 RSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAPCNGIIEE---RFVEDGATVKAGQQLFKIKP 152 (294)
Q Consensus 76 ~~~~~vp~s~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~~~~~r~~~n~l~~~---~~~~~~~~ikAva~Al~~~P 152 (294)
++++++|++++||+||++|++|++++||+|++.+||+|+|.++ |+++|..... ++...++++||+++||++||
T Consensus 2 ~~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~----r~~l~~~~~~~~~kis~~~~likAva~AL~~~P 77 (231)
T PF00198_consen 2 GEETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLAL----RKELKEAGEEPGGKISITDFLIKAVALALKEHP 77 (231)
T ss_dssp SSCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHH----HHHHHHHHHHTTST-THHHHHHHHHHHHHHHSG
T ss_pred CCcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHH----HHHhhhHHHhhccCCChhHeeeehHhhhhHHHH
Confidence 4678999999999999999999999999999999999997553 2222211110 12223679999999999999
Q ss_pred ccccCCceeecccccCCCC-eeEeCCCCCceEEEEecCCCeEEeeecC------------------------CCCCCCCC
Q psy7777 153 TVCTPNSKYRAEKKLRPGR-ELNSGPPECKPSVAVATPKGLVVPVIRN------------------------LAIEDSDG 207 (294)
Q Consensus 153 ~l~~~N~~~~~~~~~~~~~-~i~~~~~~vnigvAV~t~~GL~vPvi~d------------------------L~~~d~~g 207 (294)
.| |++|+ ++ .|++ ++++|||+||++++||++|||+| |+++|++|
T Consensus 78 ~l---Na~~~-------~~~~i~~-~~~vnIgvAV~~~~GL~vPVIr~a~~~sl~eIa~e~~~l~~~ar~g~l~~~d~~g 146 (231)
T PF00198_consen 78 EL---NASWD-------GDGEIVL-YERVNIGVAVDTPDGLVVPVIRDADKKSLAEIAKELRDLAERAREGKLTPEDLQG 146 (231)
T ss_dssp GG---SEEEE-------TTSEEEE-ESS--EEEEEEETTEEEEEEETTGGGS-HHHHHHHHHHHHHHHHTT---GGGGSS
T ss_pred Hh---ccccc-------cccceee-eeeEEEEEEEEcCCCEEEEEEeCCccccHHHHHHHHhhhhccchhhhhhhhhhhc
Confidence 99 99999 44 5999 99999999999999999999999 99999999
Q ss_pred CeeEEeecCCCCCCCceeccCCCCceEEEeeceeeeEEEeCCeEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhhCH
Q psy7777 208 GTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKIKAAVEDP 287 (294)
Q Consensus 208 gTftISNlG~~G~~~ftpii~~Pq~ail~vG~i~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P 287 (294)
|||||||+|++|+++|+|||||||+|||++|+++++|++.+|+++++++|++|||||||++||+++++||++|+++||+|
T Consensus 147 ~TftisNlG~~g~~~~~pii~~pq~ail~vG~i~~~p~~~~~~~~~~~~~~lslt~DHRvidG~~aa~Fl~~l~~~le~p 226 (231)
T PF00198_consen 147 GTFTISNLGMFGVESFTPIINPPQVAILGVGAIRDRPVVEDGEVVVRPVMNLSLTFDHRVIDGAEAARFLKDLKELLENP 226 (231)
T ss_dssp -SEEEEEGGGTT-SCEE----TTSSEEEEEEEEEEEEEEETTCEEEEEEEEEEEEEETTTS-HHHHHHHHHHHHHHHHST
T ss_pred cceeeeecCCCCcceeEccCCcccceEEEecceEEEEEEEeccceeeEEEEeEEeccceEEcHHHHHHHHHHHHHHHhCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc
Q psy7777 288 RIILA 292 (294)
Q Consensus 288 ~~lll 292 (294)
++|||
T Consensus 227 ~~lll 231 (231)
T PF00198_consen 227 ERLLL 231 (231)
T ss_dssp HHHCC
T ss_pred HHHhC
Confidence 99986
No 6
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=100.00 E-value=4.1e-58 Score=465.47 Aligned_cols=258 Identities=31% Similarity=0.422 Sum_probs=203.5
Q ss_pred CCcCCccchhhccccCCcchhh--------------hhhhhhhcCCcccchhh----hcccCCCCCCCCCcCC-CCCcce
Q psy7777 19 EISGTRSEQRVKMNRNGRNLQK--------------RSKYRQSQQPSQLNAIE----AATVKLPPADPTKEIS-GTRSEQ 79 (294)
Q Consensus 19 ~~~~t~~~~~~~~~~~g~~l~~--------------v~k~a~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~ 79 (294)
++.+||..||. |+..||||.. |.+|.......+..+.. +++...++..+..... ....++
T Consensus 276 ~~~asP~aR~l-A~e~gvdl~~v~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (590)
T TIGR02927 276 SPYVTPLVRKL-AAEHGIDLNSVKGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAAAPAAAAAASASPAPAKAHLRGT 354 (590)
T ss_pred cccCCchhHHH-HHHcCCCHHHCCCCCCCCeEeHHHHHHHHhccccccccccccccccCccccccccCCCccccccccCc
Confidence 57789999999 9999999977 33443211100000000 0000000000000000 011356
Q ss_pred EeeCcHHHHHHHHHHHHhhccCcEEEEEEEEeeccccccCCCCCCCcchhhhh----hccccCceehhHHHhhhcCCccc
Q psy7777 80 RVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAPCNGIIEE----RFVEDGATVKAGQQLFKIKPTVC 155 (294)
Q Consensus 80 ~vp~s~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~~~~~r~~~n~l~~~----~~~~~~~~ikAva~Al~~~P~l~ 155 (294)
++||++|||.||++|++||+++||||++.|||+|+|+++ |.++|....+ ++..++||+||++.||++||.|
T Consensus 355 ~~pls~~rk~ia~~m~~S~~~iPh~~~~~evdvt~l~~~----R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~- 429 (590)
T TIGR02927 355 TQKANRIREITAKKTREALQASAQLTQLHEVDMTKIAAL----RARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNV- 429 (590)
T ss_pred eeeccHHHHHHHHHHHHHhccCCeEEEEeEEEcHHHHHH----HHHHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHh-
Confidence 789999999999999999999999999999999998664 4444432221 2333478999999999999999
Q ss_pred cCCceeecccccCCCCeeEeCCCCCceEEEEecCCCeEEeeecC------------------------CCCCCCCCCeeE
Q psy7777 156 TPNSKYRAEKKLRPGRELNSGPPECKPSVAVATPKGLVVPVIRN------------------------LAIEDSDGGTFT 211 (294)
Q Consensus 156 ~~N~~~~~~~~~~~~~~i~~~~~~vnigvAV~t~~GL~vPvi~d------------------------L~~~d~~ggTft 211 (294)
|++|+ .++++|++ ++++||||||++++||+|||||| |+++||+|||||
T Consensus 430 --Na~~~-----~~~~~i~~-~~~vnigvAv~t~~GL~vPvIk~a~~~sl~~ia~~i~~l~~kAr~gkL~p~e~~GgTfT 501 (590)
T TIGR02927 430 --NASYN-----ADTKEITY-HAAEHLGFAVDTDAGLLSPVIHNAGDLSLGEIAKAIADIAARARNGKLKPDDLAGGTFT 501 (590)
T ss_pred --heEEe-----cCCCEEEE-eCCccEEEEEECCCCcEecccCCcccCCHHHHHHHHHHHHHHHHcCCCChHHhCCCeEE
Confidence 99998 34678999 99999999999999999999998 999999999999
Q ss_pred EeecCCCCCCCceeccCCCCceEEEeeceeeeEEEeC---C--eEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhhC
Q psy7777 212 ISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIK---G--QVVVKPMMYVALTYDHRLIDGREAVLFLRKIKAAVED 286 (294)
Q Consensus 212 ISNlG~~G~~~ftpii~~Pq~ail~vG~i~~~pv~~~---g--~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~ 286 (294)
|||+|+||+++||||||+||+||||+|+++++|++.+ | .+.+|++|+||||||||||||+++|+||++|+++||+
T Consensus 502 ISNlG~~G~~~~tpIIn~PqvaILgvG~i~~~pv~~~~~~g~~~~~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~LE~ 581 (590)
T TIGR02927 502 ITNIGSEGALFDTPILIPPQAAILGTGAIVKRPRVITDEDGIDSIAIRQMCHLPLTYDHQLIDGADAGRFLTTIKDRLEE 581 (590)
T ss_pred EECCCCCCccceeceecCCCeEEEEcccceEEEEEeccCCCcccEEEEeeEEEeeeccchhcCcHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999852 3 4999999999999999999999999999999999999
Q ss_pred HHHh
Q psy7777 287 PRII 290 (294)
Q Consensus 287 P~~l 290 (294)
|..+
T Consensus 582 ~~~~ 585 (590)
T TIGR02927 582 AAFE 585 (590)
T ss_pred cccc
Confidence 8643
No 7
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=100.00 E-value=1.3e-57 Score=447.29 Aligned_cols=255 Identities=29% Similarity=0.401 Sum_probs=204.4
Q ss_pred CCcCCccchhhccccCCcchhh--------------hhhhhhhcCCcccchhhhcccCCCCCCCCCcCCCCCcceEeeCc
Q psy7777 19 EISGTRSEQRVKMNRNGRNLQK--------------RSKYRQSQQPSQLNAIEAATVKLPPADPTKEISGTRSEQRVKMN 84 (294)
Q Consensus 19 ~~~~t~~~~~~~~~~~g~~l~~--------------v~k~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s 84 (294)
++.+||..||. |++.||||+. |..|....+.++ +.++++. .++............++++||+
T Consensus 138 ~~~asP~vR~l-A~e~gvdl~~v~gtG~~GrI~~~DV~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~v~ls 213 (435)
T TIGR01349 138 RIFASPLAKKL-AKEKGIDLSAVAGSGPNGRIVKKDIESFVPQSPASA--NFQAAAT-TPATKKAAAPVSTGSYEDVPLS 213 (435)
T ss_pred cccCCHHHHHH-HHHcCCCHhHCCCCCCCCceeHHHHHHHHhcccccC--CCccccc-cccccccCCCccCCcceeeccc
Confidence 45689999999 9999999976 333322110000 0000000 0000000000011225679999
Q ss_pred HHHHHHHHHHHHhhccCcEEEEEEEEeeccccccCCCCCCCcchhhh--hhccccCceehhHHHhhhcCCccccCCceee
Q psy7777 85 RMRQRIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAPCNGIIE--ERFVEDGATVKAGQQLFKIKPTVCTPNSKYR 162 (294)
Q Consensus 85 ~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~~~~~r~~~n~l~~--~~~~~~~~~ikAva~Al~~~P~l~~~N~~~~ 162 (294)
+|||.|+++|++||+++||||++.++|+|+|+++ |.+++.... .++...+||+||+++||++||.| |++|+
T Consensus 214 ~~rk~ia~~m~~S~~~ip~~~~~~evd~t~l~~~----r~~~~~~~~~~~klt~~~~l~kA~a~AL~~~P~~---Na~~~ 286 (435)
T TIGR01349 214 NIRKIIAKRLLESKQTIPHYYVSIECNVDKLLAL----RKELNAMASEVYKLSVNDFIIKASALALREVPEA---NSSWT 286 (435)
T ss_pred HHHHHHHHHHHHHHhhCCeEEEEEEEEhHHHHHH----HHHHHhhhhcCCcccHHHHHHHHHHHHHHhCcHh---heEEe
Confidence 9999999999999999999999999999997654 333322111 12233468999999999999999 99999
Q ss_pred cccccCCCCeeEeCCCCCceEEEEecCCCeEEeeecC------------------------CCCCCCCCCeeEEeecCCC
Q psy7777 163 AEKKLRPGRELNSGPPECKPSVAVATPKGLVVPVIRN------------------------LAIEDSDGGTFTISNGGVF 218 (294)
Q Consensus 163 ~~~~~~~~~~i~~~~~~vnigvAV~t~~GL~vPvi~d------------------------L~~~d~~ggTftISNlG~~ 218 (294)
++.|++ ++++||||||++++||++|||+| |+++|++||||||||+|+|
T Consensus 287 -------~~~i~~-~~~vnigvAv~~~~GL~vPvi~~a~~~sl~eia~~i~~l~~~ar~~~L~~~d~~ggTfTISNlG~~ 358 (435)
T TIGR01349 287 -------DNFIRR-YKNVDISVAVATPDGLITPIVRNADAKGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISNLGMF 358 (435)
T ss_pred -------CCeEEE-eCCeeEEEEEECCCCeEECCCCCcccCCHHHHHHHHHHHHHHHhcCCCChhhcCCCeEEEecCCcc
Confidence 678999 99999999999999999999998 9999999999999999999
Q ss_pred CCCCceeccCCCCceEEEeeceeeeEEEeCCe---EEEEeEEEEEEeecccccchHHHHHHHHHHHHHhhCHHHhhc
Q psy7777 219 GSLLGTPIINPPQSAILGMHGTFERPVAIKGQ---VVVKPMMYVALTYDHRLIDGREAVLFLRKIKAAVEDPRIILA 292 (294)
Q Consensus 219 G~~~ftpii~~Pq~ail~vG~i~~~pv~~~g~---i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~lll 292 (294)
|+.+|+||||+||+||||+|++.++|++.+|+ ++++++|+||||||||||||+++|+||++|+++||+|..||+
T Consensus 359 G~~~~tpiin~pq~aIlgvG~i~~~pv~~~~~~~~i~~~~~m~lsls~DHRviDGa~aa~Fl~~lk~~lE~p~~lll 435 (435)
T TIGR01349 359 GIKDFTAIINPPQACILAVGAVEDVAVVDNDEEKGFAVASIMSVTLSCDHRVIDGAVGAEFLKSFKKYLENPIEMLL 435 (435)
T ss_pred CccceECccCCCceEEEEcccceEEeEEeCCccceeEEeeeEEEeEeecchhhCcHHHHHHHHHHHHHHhCHHhhhC
Confidence 99999999999999999999999999998776 999999999999999999999999999999999999998875
No 8
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=100.00 E-value=1.8e-57 Score=444.24 Aligned_cols=203 Identities=26% Similarity=0.392 Sum_probs=181.6
Q ss_pred ceEeeCcHHHHHHHHHHHHhhccCcEEEEEEEEeeccccccCCCCCCCcchhhhh---hccccCceehhHHHhhhcCCcc
Q psy7777 78 EQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAPCNGIIEE---RFVEDGATVKAGQQLFKIKPTV 154 (294)
Q Consensus 78 ~~~vp~s~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~~~~~r~~~n~l~~~---~~~~~~~~ikAva~Al~~~P~l 154 (294)
.+++||++|||.||++|++|+ ++||||++.+||+|+|.++ |.+++...+. ++...+||+||+++||++||.+
T Consensus 185 ~~~~~l~~~r~~ia~~m~~S~-~ip~~~~~~eid~~~l~~~----r~~~~~~~~~~g~kls~~~~likA~a~aL~~~P~~ 259 (416)
T PLN02528 185 DKTIPLRGFQRAMVKTMTAAA-KVPHFHYVEEINVDALVEL----KASFQENNTDPTVKHTFLPFLIKSLSMALSKYPLL 259 (416)
T ss_pred ceeeccchHHHHHHHHHHhcC-cCCeEEEEEEEEhHHHHHH----HHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCchh
Confidence 467899999999999999998 8999999999999997653 2222211111 1223367999999999999999
Q ss_pred ccCCceeecccccCCCCeeEeCCCCCceEEEEecCCCeEEeeecC------------------------CCCCCCCCCee
Q psy7777 155 CTPNSKYRAEKKLRPGRELNSGPPECKPSVAVATPKGLVVPVIRN------------------------LAIEDSDGGTF 210 (294)
Q Consensus 155 ~~~N~~~~~~~~~~~~~~i~~~~~~vnigvAV~t~~GL~vPvi~d------------------------L~~~d~~ggTf 210 (294)
|++|+ ++++.|++ ++++||||||++++||++|||+| |+++|++||||
T Consensus 260 ---Na~~~-----~~~~~i~~-~~~vnIgiAv~~~~GL~vPvi~~a~~~sl~eI~~~~~~l~~~ar~gkL~~~dl~ggTf 330 (416)
T PLN02528 260 ---NSCFN-----EETSEIRL-KGSHNIGVAMATEHGLVVPNIKNVQSLSLLEITKELSRLQHLAAENKLNPEDITGGTI 330 (416)
T ss_pred ---hEEEe-----cCCceEEE-eCCCCeEEEEeCCCCeEecccCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceE
Confidence 99998 33557999 99999999999999999999998 99999999999
Q ss_pred EEeecCCCCCCCceeccCCCCceEEEeeceeeeEEEe-CCeEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhhCHHH
Q psy7777 211 TISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAI-KGQVVVKPMMYVALTYDHRLIDGREAVLFLRKIKAAVEDPRI 289 (294)
Q Consensus 211 tISNlG~~G~~~ftpii~~Pq~ail~vG~i~~~pv~~-~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~ 289 (294)
||||+|+||+.+|+|||||||+||||+|+++++|++. +|++.+|++|+||||||||||||+++++||++|+++||+|+.
T Consensus 331 tiSNlG~~G~~~~tpIin~pq~aIlgvG~i~~~pv~~~~g~i~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~le~P~~ 410 (416)
T PLN02528 331 TLSNIGAIGGKFGSPVLNLPEVAIIALGRIQKVPRFVDDGNVYPASIMTVTIGADHRVLDGATVARFCNEWKSYVEKPEL 410 (416)
T ss_pred EEeCCccccCCceECcccCCceEEEEcccceEEeEEeCCCcEEEEeEEEEeEeccchhcCcHHHHHHHHHHHHHHhCHHH
Confidence 9999999999999999999999999999999999986 589999999999999999999999999999999999999999
Q ss_pred hhcCC
Q psy7777 290 ILAGL 294 (294)
Q Consensus 290 lll~~ 294 (294)
||+++
T Consensus 411 lll~~ 415 (416)
T PLN02528 411 LMLHM 415 (416)
T ss_pred HHhcc
Confidence 99875
No 9
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=100.00 E-value=4.6e-57 Score=454.41 Aligned_cols=202 Identities=31% Similarity=0.418 Sum_probs=183.6
Q ss_pred ceEeeCcHHHHHHHHHHHHhhccCcEEEEEEEEeeccccccCCCCCCCcchhhhh---hccccCceehhHHHhhhcCCcc
Q psy7777 78 EQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAPCNGIIEE---RFVEDGATVKAGQQLFKIKPTV 154 (294)
Q Consensus 78 ~~~vp~s~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~~~~~r~~~n~l~~~---~~~~~~~~ikAva~Al~~~P~l 154 (294)
++++||++|||.||++|++|++++||||++.|+|+|+|.++ |.++|...++ ++...+||+||++.||++||.|
T Consensus 318 ~~~v~~s~~rk~ia~~m~~S~~~iPh~~~~~evdvt~l~~~----r~~l~~~~~~~g~kls~~~~l~kA~~~AL~~~P~~ 393 (546)
T TIGR01348 318 VEEVDMSRIRKISGANLTRNWTMIPHVTHFDKADITEMEAF----RKQQNAAVEKEGVKLTVLHILMKAVAAALKKFPKF 393 (546)
T ss_pred ceeeecchHHHHHHHHHHHHhhcCCEEEEEEEEEcHHHHHH----HHHHHhhhhhcCCcccHHHHHHHHHHHHHHhCChh
Confidence 56799999999999999999999999999999999997653 4444432221 2233468999999999999999
Q ss_pred ccCCceeecccccCCCCeeEeCCCCCceEEEEecCCCeEEeeecC------------------------CCCCCCCCCee
Q psy7777 155 CTPNSKYRAEKKLRPGRELNSGPPECKPSVAVATPKGLVVPVIRN------------------------LAIEDSDGGTF 210 (294)
Q Consensus 155 ~~~N~~~~~~~~~~~~~~i~~~~~~vnigvAV~t~~GL~vPvi~d------------------------L~~~d~~ggTf 210 (294)
|++|+ ++++.|++ ++++||||||++++||++|||+| |+++||+||||
T Consensus 394 ---Na~~~-----~~~~~i~~-~~~vnigvAv~~~~GL~vPvi~~a~~~sl~~ia~~~~~l~~~ar~g~L~~~d~~ggTf 464 (546)
T TIGR01348 394 ---NASLD-----LGGEQLIL-KKYVNIGVAVDTPNGLLVPVIKDVDRKGITELALELSDLAKKARDGKLTPDEMQGACF 464 (546)
T ss_pred ---hEEEe-----CCCCEEEE-eCCcCEEEEEECCCCeEECCcCCcccCCHHHHHHHHHHHHHHHhcCCCCHHHhCCCeE
Confidence 99998 33668999 99999999999999999999998 89999999999
Q ss_pred EEeecCCCCCCCceeccCCCCceEEEeeceeeeEEEeCCeEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhhCHHHh
Q psy7777 211 TISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKIKAAVEDPRII 290 (294)
Q Consensus 211 tISNlG~~G~~~ftpii~~Pq~ail~vG~i~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~l 290 (294)
||||+|+||+++|+||||+||+||||+|+++++|++.+|+++++++|+||||||||+|||+++++||++|+++||+|..|
T Consensus 465 TiSNlG~~G~~~~~piin~Pq~aIl~vg~~~~~p~~~~~~~~~~~~m~ltls~DHRviDGa~aa~Fl~~~~~~le~P~~l 544 (546)
T TIGR01348 465 TISSLGGIGGTAFTPIVNAPEVAILGVSKSGMEPVWNGKEFEPRLMLPLSLSYDHRVIDGADAARFTTYICESLADIRRL 544 (546)
T ss_pred EEeCCCCCCCcceECCCCCCceEEEEcccceEEeEEECCEEEEEEEEEEeEeccchhcChHHHHHHHHHHHHHHhCHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hc
Q psy7777 291 LA 292 (294)
Q Consensus 291 ll 292 (294)
|+
T Consensus 545 l~ 546 (546)
T TIGR01348 545 LL 546 (546)
T ss_pred hC
Confidence 75
No 10
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=100.00 E-value=3.9e-57 Score=451.38 Aligned_cols=251 Identities=27% Similarity=0.352 Sum_probs=204.6
Q ss_pred CCcCCccchhhccccCCcchhhhhh----------hhhhcCCcccchhhhcccCCCCCCCCCcCCCCCcceEeeCcHHHH
Q psy7777 19 EISGTRSEQRVKMNRNGRNLQKRSK----------YRQSQQPSQLNAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQ 88 (294)
Q Consensus 19 ~~~~t~~~~~~~~~~~g~~l~~v~k----------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~Rk 88 (294)
++.+||.+||. |++.||||+.+.. +.+...... .+.+++ +.+.+. ..+...++++|+++|||
T Consensus 248 ~i~ASP~aRrL-Are~GVDLs~V~GTGp~GRI~k~DV~a~~~~~-~~~~~~----~~~~~~--~~~~~~~~~vpls~~Rk 319 (539)
T PLN02744 248 RIFASPLARKL-AEDNNVPLSSIKGTGPDGRIVKADIEDYLASG-GKGATA----PPSTDS--KAPALDYTDIPNTQIRK 319 (539)
T ss_pred cccCCchhHHH-HHHcCCCHHHCCCCCCCCcccHHHHHHHhhcc-ccccCC----CCCccc--CCCCCccccccchhHHH
Confidence 46689999999 9999999977422 222110000 000000 000000 00111246789999999
Q ss_pred HHHHHHHHhhccCcEEEEEEEEeeccccccCCCCCCCcchhhhh----hccccCceehhHHHhhhcCCccccCCceeecc
Q psy7777 89 RIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAPCNGIIEE----RFVEDGATVKAGQQLFKIKPTVCTPNSKYRAE 164 (294)
Q Consensus 89 ~ia~~m~~S~~~iP~~~~~~evDvt~l~~~~~~~r~~~n~l~~~----~~~~~~~~ikAva~Al~~~P~l~~~N~~~~~~ 164 (294)
.||++|++||+++||||++.|+|+|+|++ +|.++|...++ ++...+|++||++.||++||.+ |++|+
T Consensus 320 ~IA~~m~~S~~~iPh~t~~~evdvt~L~~----lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~l---Na~~~-- 390 (539)
T PLN02744 320 VTASRLLQSKQTIPHYYLTVDTRVDKLMA----LRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQC---NSSWT-- 390 (539)
T ss_pred HHHHHHHHHHhhCCeEEEEEEEEcHHHHH----HHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHh---heeec--
Confidence 99999999999999999999999999765 34444433221 1233468999999999999999 99998
Q ss_pred cccCCCCeeEeCCCCCceEEEEecCCCeEEeeecC------------------------CCCCCCCCCeeEEeecC-CCC
Q psy7777 165 KKLRPGRELNSGPPECKPSVAVATPKGLVVPVIRN------------------------LAIEDSDGGTFTISNGG-VFG 219 (294)
Q Consensus 165 ~~~~~~~~i~~~~~~vnigvAV~t~~GL~vPvi~d------------------------L~~~d~~ggTftISNlG-~~G 219 (294)
++.|++ ++++||||||++++||+||||+| |+++|++||||||||+| +||
T Consensus 391 -----~~~i~~-~~~vnIgvAV~t~~GL~vPVIr~ad~~sl~eIa~ei~~L~~kAr~~kL~~~dl~GGTfTISNlGg~~G 464 (539)
T PLN02744 391 -----DDYIRQ-YHNVNINVAVQTENGLYVPVVKDADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSNLGGPFG 464 (539)
T ss_pred -----cCcEEE-eCCcceEEEEECCCCeEECcCCCcccCCHHHHHHHHHHHHHHHHcCCCChhhcCCceEEEeCCCcccc
Confidence 678999 99999999999999999999998 99999999999999998 899
Q ss_pred CCCceeccCCCCceEEEeeceeeeEEE--eCCeEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhhCHHHhhc
Q psy7777 220 SLLGTPIINPPQSAILGMHGTFERPVA--IKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKIKAAVEDPRIILA 292 (294)
Q Consensus 220 ~~~ftpii~~Pq~ail~vG~i~~~pv~--~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~lll 292 (294)
+.+|||||||||+||||+|+++++|++ .+|+++++++|+||||||||||||+++|+||++|+++||+|..|||
T Consensus 465 ~~~ftpIInpPqvaILgvG~i~~~pvv~~~~g~i~~r~~m~lsLs~DHRvIDGa~AA~FL~~lk~~LE~P~~lll 539 (539)
T PLN02744 465 IKQFCAIINPPQSAILAVGSAEKRVIPGSGPDQYNFASFMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL 539 (539)
T ss_pred cceeeccccCCcEEEEEcccceeEeEEeccCCeEEEeeeeEEeEecchhhhCcHHHHHHHHHHHHHhcCHHhhhC
Confidence 999999999999999999999999998 4899999999999999999999999999999999999999999875
No 11
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=100.00 E-value=3.3e-57 Score=444.25 Aligned_cols=202 Identities=51% Similarity=0.822 Sum_probs=184.5
Q ss_pred ceEeeCcHHHHHHHHHHHHhhccCcEEEEEEEEeeccccccCCCCCCCcchhhhh----hccccCceehhHHHhhhcCCc
Q psy7777 78 EQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAPCNGIIEE----RFVEDGATVKAGQQLFKIKPT 153 (294)
Q Consensus 78 ~~~vp~s~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~~~~~r~~~n~l~~~----~~~~~~~~ikAva~Al~~~P~ 153 (294)
.+++|+++|||.||++|++||+++||||++.|||+|+|.++ |.++|...++ ++...+|++||+++||++||.
T Consensus 234 ~~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~evDvt~L~~l----R~~l~~~~~~~~g~klS~~~~liKAva~AL~~~P~ 309 (463)
T PLN02226 234 ERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKL----RSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPV 309 (463)
T ss_pred ceeeeChHHHHHHHHHHHHHHhcCCEEEEEEEEEcHHHHHH----HHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCCH
Confidence 46789999999999999999999999999999999997664 3333321111 123346899999999999999
Q ss_pred cccCCceeecccccCCCCeeEeCCCCCceEEEEecCCCeEEeeecC------------------------CCCCCCCCCe
Q psy7777 154 VCTPNSKYRAEKKLRPGRELNSGPPECKPSVAVATPKGLVVPVIRN------------------------LAIEDSDGGT 209 (294)
Q Consensus 154 l~~~N~~~~~~~~~~~~~~i~~~~~~vnigvAV~t~~GL~vPvi~d------------------------L~~~d~~ggT 209 (294)
+ |++|+ ++.|++ ++++||||||++++||+||||+| |+++|++|||
T Consensus 310 l---Na~~~-------~~~i~~-~~~vnIGvAV~t~~GLvVPVIr~ad~~sl~eIa~ei~~L~~kAR~gkL~~~dl~GGT 378 (463)
T PLN02226 310 V---NAVID-------GDDIIY-RDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEKTINGLAKKANEGTISIDEMAGGS 378 (463)
T ss_pred h---heEEc-------CCEEEE-eCcccEEEEEECCCCEEeccCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCe
Confidence 9 99998 678999 99999999999999999999998 9999999999
Q ss_pred eEEeecCCCCCCCceeccCCCCceEEEeeceeeeEEEeCCeEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhhCHHH
Q psy7777 210 FTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKIKAAVEDPRI 289 (294)
Q Consensus 210 ftISNlG~~G~~~ftpii~~Pq~ail~vG~i~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~ 289 (294)
|||||+|+||+++|||||||||+||||+|+++++|++.||++++|++|+||||||||||||+++|+||++|+++||+|..
T Consensus 379 fTISNlG~~Gv~~ftPIInpPqvAILgvG~i~~~pvv~~g~i~~r~~m~lsLs~DHRVIDGa~aA~FL~~lk~~LE~P~~ 458 (463)
T PLN02226 379 FTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPMVVGGSVVPRPMMYVALTYDHRLIDGREAVYFLRRVKDVVEDPQR 458 (463)
T ss_pred EEEECCCcccccceeccccCCcEEEEEcccceEEEEEECCEEEEEeEEEEeEecchhhhCcHHHHHHHHHHHHHhcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCC
Q psy7777 290 ILAGL 294 (294)
Q Consensus 290 lll~~ 294 (294)
||+++
T Consensus 459 LLl~~ 463 (463)
T PLN02226 459 LLLDI 463 (463)
T ss_pred HhhcC
Confidence 99874
No 12
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=100.00 E-value=7.5e-57 Score=438.33 Aligned_cols=202 Identities=58% Similarity=0.836 Sum_probs=184.3
Q ss_pred ceEeeCcHHHHHHHHHHHHhhccCcEEEEEEEEeeccccccCCCCCCCcchhhhh----hccccCceehhHHHhhhcCCc
Q psy7777 78 EQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAPCNGIIEE----RFVEDGATVKAGQQLFKIKPT 153 (294)
Q Consensus 78 ~~~vp~s~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~~~~~r~~~n~l~~~----~~~~~~~~ikAva~Al~~~P~ 153 (294)
.+.+|+++|||+||++|++||+++||||++.|||+|+|.++ |.+++....+ +++..+|++||++.||++||.
T Consensus 189 ~~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~l~~~----r~~~~~~~~~~~g~klS~~~~liKAva~AL~~~P~ 264 (418)
T PTZ00144 189 ETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSALMEL----RKEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPI 264 (418)
T ss_pred ceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechHHHHH----HHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChH
Confidence 45689999999999999999999999999999999997664 3333321111 223346899999999999999
Q ss_pred cccCCceeecccccCCCCeeEeCCCCCceEEEEecCCCeEEeeecC------------------------CCCCCCCCCe
Q psy7777 154 VCTPNSKYRAEKKLRPGRELNSGPPECKPSVAVATPKGLVVPVIRN------------------------LAIEDSDGGT 209 (294)
Q Consensus 154 l~~~N~~~~~~~~~~~~~~i~~~~~~vnigvAV~t~~GL~vPvi~d------------------------L~~~d~~ggT 209 (294)
+ |++|+ ++.|++ ++++|||+||++++||++|||+| |+++|++|||
T Consensus 265 ~---Na~~~-------~~~i~~-~~~vnIgvAV~~~~GL~vPVI~~ad~~sl~eIa~ei~~L~~~ar~g~L~~~e~~GgT 333 (418)
T PTZ00144 265 V---NAYID-------GDEIVY-RNYVDISVAVATPTGLVVPVIRNCENKSFAEIEKELADLAEKARNNKLTLEDMTGGT 333 (418)
T ss_pred h---heEEc-------CCEEEE-ecCCCEEEEEECCCCEEEccCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCce
Confidence 9 99998 678999 99999999999999999999998 8999999999
Q ss_pred eEEeecCCCCCCCceeccCCCCceEEEeeceeeeEEEeCCeEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhhCHHH
Q psy7777 210 FTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKIKAAVEDPRI 289 (294)
Q Consensus 210 ftISNlG~~G~~~ftpii~~Pq~ail~vG~i~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~ 289 (294)
|||||+|++|+++|||||||||+||||+|+++++|++.+|++++|++|+||||||||+|||++||+||++|+++||+|..
T Consensus 334 fTISNlG~~G~~~~tpIInpPq~aILgvG~i~~~pvv~~g~i~~r~~m~lsLs~DHRviDGa~AA~FL~~lk~~LE~P~~ 413 (418)
T PTZ00144 334 FTISNGGVFGSLMGTPIINPPQSAILGMHAIKKRPVVVGNEIVIRPIMYLALTYDHRLIDGRDAVTFLKKIKDLIEDPAR 413 (418)
T ss_pred EEEECCCCCCcceeeeeecCCceEEEecccceeEeEEECCEEEEEeEEEEEEecchhhhChHHHHHHHHHHHHHhcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCC
Q psy7777 290 ILAGL 294 (294)
Q Consensus 290 lll~~ 294 (294)
||++|
T Consensus 414 lll~~ 418 (418)
T PTZ00144 414 MLLDL 418 (418)
T ss_pred HhhcC
Confidence 99876
No 13
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=100.00 E-value=7.8e-54 Score=437.61 Aligned_cols=202 Identities=29% Similarity=0.423 Sum_probs=181.4
Q ss_pred ceEeeCcHHHHHHHHHHHHhhccCcEEEEEEEEeeccccccCCCCCCCcchhhh-h----hccccCceehhHHHhhhcCC
Q psy7777 78 EQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAPCNGIIE-E----RFVEDGATVKAGQQLFKIKP 152 (294)
Q Consensus 78 ~~~vp~s~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~~~~~r~~~n~l~~-~----~~~~~~~~ikAva~Al~~~P 152 (294)
++++||++|||.||++|.+||+++|||+++.++|+|+|.++ |+++|.... + ++...+|++||+++||++||
T Consensus 403 ~~~~~l~~~r~~ia~~m~~S~~~ip~~~~~~evD~t~l~~~----rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P 478 (633)
T PRK11854 403 IEEVELGRIQKISGANLHRNWVMIPHVTQFDKADITELEAF----RKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMP 478 (633)
T ss_pred ceEEeCchHHHHHHHHHHHHHhcCCeEEEEeEEEcHHHHHH----HHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCC
Confidence 46789999999999999999999999999999999997653 222221110 0 12233679999999999999
Q ss_pred ccccCCceeecccccCCCCeeEeCCCCCceEEEEecCCCeEEeeecC------------------------CCCCCCCCC
Q psy7777 153 TVCTPNSKYRAEKKLRPGRELNSGPPECKPSVAVATPKGLVVPVIRN------------------------LAIEDSDGG 208 (294)
Q Consensus 153 ~l~~~N~~~~~~~~~~~~~~i~~~~~~vnigvAV~t~~GL~vPvi~d------------------------L~~~d~~gg 208 (294)
.| |++|+ .+++++++ ++++|||+||++++||++|||+| |+++|++||
T Consensus 479 ~~---Na~~~-----~~~~~i~~-~~~vnigiAV~~~~GL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~gg 549 (633)
T PRK11854 479 RF---NSSLS-----EDGQRLTL-KKYVNIGIAVDTPNGLVVPVFKDVNKKGIIELSRELMDISKKARDGKLTAGDMQGG 549 (633)
T ss_pred Hh---hEEEe-----cCCCEEEE-ecccCEEEEEECCCceEEeeECCCccCCHHHHHHHHHHHHHHHHcCCCChHHcCCc
Confidence 99 99997 33678999 99999999999999999999998 899999999
Q ss_pred eeEEeecCCCCCCCceeccCCCCceEEEeeceeeeEEEeCCeEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhhCHH
Q psy7777 209 TFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKIKAAVEDPR 288 (294)
Q Consensus 209 TftISNlG~~G~~~ftpii~~Pq~ail~vG~i~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~ 288 (294)
||||||+||||+++|+|||||||+|||++|++.++|+|.+|.+.+|++|+||||||||+|||+++|+||++|+++||+|.
T Consensus 550 TftISnlG~~G~~~~tpii~ppq~aIlgvG~i~~~p~~~~~~~~~r~~m~lslt~DHRviDGa~aa~Fl~~lk~~LE~p~ 629 (633)
T PRK11854 550 CFTISSIGGLGTTHFTPIVNAPEVAILGVSKSAMEPVWNGKEFAPRLMLPLSLSYDHRVIDGADGARFITIINDRLSDIR 629 (633)
T ss_pred EEEEeCCcccCCcceeccccCCceEEEEcccceEEEEEECCEEEEEEEEEEeEEccchhcchHHHHHHHHHHHHHHhCHH
Confidence 99999999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred Hhhc
Q psy7777 289 IILA 292 (294)
Q Consensus 289 ~lll 292 (294)
.|||
T Consensus 630 ~ll~ 633 (633)
T PRK11854 630 RLVL 633 (633)
T ss_pred hhhC
Confidence 8875
No 14
>KOG0559|consensus
Probab=100.00 E-value=1.6e-53 Score=398.88 Aligned_cols=206 Identities=65% Similarity=0.918 Sum_probs=188.1
Q ss_pred CCCcceEeeCcHHHHHHHHHHHHhhccCcEEEEEEEEeeccccccCCCCCCCcch-hhhhhccccC---ceehhHHHhhh
Q psy7777 74 GTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAPCNG-IIEERFVEDG---ATVKAGQQLFK 149 (294)
Q Consensus 74 ~~~~~~~vp~s~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~~~~~r~~~n~-l~~~~~~~~~---~~ikAva~Al~ 149 (294)
+++.++|++|++||+.||+||.+|+++...+|.+.||||+.|.+ +|++++. ++++...+.| +|+||++.||+
T Consensus 224 ~~R~E~RVkMnRmR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~----mRk~ykdaf~kKhGvKlGfMs~F~KA~~~Alq 299 (457)
T KOG0559|consen 224 PSRSERRVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLME----MRKQYKDAFLKKHGVKLGFMSGFSKAAAYALQ 299 (457)
T ss_pred CCcchhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHH----HHHHHHHHHHHHhCceeeehhHHHHHHHHHhh
Confidence 34678999999999999999999999999999999999999654 3444332 2222222223 49999999999
Q ss_pred cCCccccCCceeecccccCCCCeeEeCCCCCceEEEEecCCCeEEeeecC------------------------CCCCCC
Q psy7777 150 IKPTVCTPNSKYRAEKKLRPGRELNSGPPECKPSVAVATPKGLVVPVIRN------------------------LAIEDS 205 (294)
Q Consensus 150 ~~P~l~~~N~~~~~~~~~~~~~~i~~~~~~vnigvAV~t~~GL~vPvi~d------------------------L~~~d~ 205 (294)
+.|.+ |+.++ |+.|+| ++++||||||+|+.||+|||||| |.-+||
T Consensus 300 ~qPvV---NavId-------g~~iVY-RDyvDISvAVaTpkGLVvPViRnae~Mn~adIE~~i~~L~~KAr~g~laiedM 368 (457)
T KOG0559|consen 300 DQPVV---NAVID-------GDDIVY-RDYVDISVAVATPKGLVVPVIRNAESMNFADIEKTIAGLGKKARDGKLAIEDM 368 (457)
T ss_pred hCcce---eeeec-------CCeeEE-eecceeEEEeecCCceeeeeecccccccHHHHHHHHHHHHHhhccCceeeeec
Confidence 99999 99999 889999 99999999999999999999999 888999
Q ss_pred CCCeeEEeecCCCCCCCceeccCCCCceEEEeeceeeeEEEeCCeEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhh
Q psy7777 206 DGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKIKAAVE 285 (294)
Q Consensus 206 ~ggTftISNlG~~G~~~ftpii~~Pq~ail~vG~i~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le 285 (294)
.||||||||-|.||..+.||||||||+||||+..|.+||++.+|++++|+||+|.||||||+|||.+|.-||+.+|+++|
T Consensus 369 ~gGTFTISNGGVfGSL~gTPIINpPQsAILGmHgI~eRPv~v~G~Vv~RPMMYvALTYDHRliDGREAVtFLr~iK~~VE 448 (457)
T KOG0559|consen 369 AGGTFTISNGGVFGSLYGTPIINPPQSAILGMHGIKERPVVVGGQVVPRPMMYVALTYDHRLIDGREAVTFLRKIKEAVE 448 (457)
T ss_pred cCceEEEeCCcEeeeeccCcccCCchhhhhhcccccccceeeCCEeeeccceEEEeeccccccccHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHhhcCC
Q psy7777 286 DPRIILAGL 294 (294)
Q Consensus 286 ~P~~lll~~ 294 (294)
||..|||+|
T Consensus 449 DP~~mll~l 457 (457)
T KOG0559|consen 449 DPRKMLLDL 457 (457)
T ss_pred CHHHHhhcC
Confidence 999999986
No 15
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=5.1e-52 Score=418.27 Aligned_cols=202 Identities=33% Similarity=0.433 Sum_probs=181.3
Q ss_pred ceEeeCcHHHHHHHHHHHHhhccCcEEEEEEEEeeccccccCCCCCCCcchhhhh---hccccCceehhHHHhhhcCCcc
Q psy7777 78 EQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAPCNGIIEE---RFVEDGATVKAGQQLFKIKPTV 154 (294)
Q Consensus 78 ~~~vp~s~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~~~~~r~~~n~l~~~---~~~~~~~~ikAva~Al~~~P~l 154 (294)
++++||++|||.||++|++||+++|||+++.+||+|+|.++ |++++...++ ++...++++||+++||++||+|
T Consensus 319 ~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~----r~~~~~~~~~~g~k~s~~~~likAv~~al~~~P~l 394 (547)
T PRK11855 319 IETKPLSRIKKISAANLHRSWVTIPHVTQFDEADITDLEAL----RKQLKKEAEKAGVKLTMLPFFIKAVVAALKEFPVF 394 (547)
T ss_pred ceEEeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEChHHHHH----HHHhhhhhhhcCCCCCHHHHHHHHHHHHHHhCcHh
Confidence 56799999999999999999999999999999999997653 3333322211 1222357999999999999999
Q ss_pred ccCCceeecccccCCCCeeEeCCCCCceEEEEecCCCeEEeeecC------------------------CCCCCCCCCee
Q psy7777 155 CTPNSKYRAEKKLRPGRELNSGPPECKPSVAVATPKGLVVPVIRN------------------------LAIEDSDGGTF 210 (294)
Q Consensus 155 ~~~N~~~~~~~~~~~~~~i~~~~~~vnigvAV~t~~GL~vPvi~d------------------------L~~~d~~ggTf 210 (294)
|++|+ ++++.+++ ++++|||+||++++||++|||+| |.++|++||||
T Consensus 395 ---n~~~~-----~~~~~i~~-~~~i~i~~Av~~~~gl~vpvi~~~~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggtf 465 (547)
T PRK11855 395 ---NASLD-----EDGDELTY-KKYFNIGFAVDTPNGLVVPVIKDVDKKSLLEIAREIAELAKKARDGKLKPDDMQGGCF 465 (547)
T ss_pred ---hEEEc-----cCCCEEEE-eCCccEEEEEECCCccEeCCcCCCccCCHHHHHHHHHHHHHHHHcCCCChHhcCCceE
Confidence 99998 33668999 99999999999999999999998 88899999999
Q ss_pred EEeecCCCCCCCceeccCCCCceEEEeeceeeeEEEeCCeEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhhCHHHh
Q psy7777 211 TISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKIKAAVEDPRII 290 (294)
Q Consensus 211 tISNlG~~G~~~ftpii~~Pq~ail~vG~i~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~l 290 (294)
||||+||||+++|+|+|||||+||||+|+++++|++.+|.+..|++|+|||+||||+|||+++++||++|+++||+|..|
T Consensus 466 tiSnlg~~g~~~~tpii~~pq~ail~~G~~~~~pv~~~~~~~~r~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~l 545 (547)
T PRK11855 466 TISSLGGIGGTAFTPIINAPEVAILGVGKSQMKPVWDGKEFVPRLMLPLSLSYDHRVIDGATAARFTNYLKQLLADPRRM 545 (547)
T ss_pred EEeCCccccccceecCcCCCceEEEEcccceEeeeeeCCEEEEEeEEEEeEEccchhcCcHHHHHHHHHHHHHHhCHHhh
Confidence 99999999999999999999999999999999998888999999999999999999999999999999999999999998
Q ss_pred hc
Q psy7777 291 LA 292 (294)
Q Consensus 291 ll 292 (294)
|+
T Consensus 546 l~ 547 (547)
T PRK11855 546 LL 547 (547)
T ss_pred hC
Confidence 75
No 16
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=100.00 E-value=2.6e-51 Score=400.09 Aligned_cols=252 Identities=33% Similarity=0.498 Sum_probs=201.9
Q ss_pred CcCCccchhhccccCCcchhhh----------hhhhhhcCC-cccchhhhcccCCCCCCCCCcCCCCCcceEeeCcHHHH
Q psy7777 20 ISGTRSEQRVKMNRNGRNLQKR----------SKYRQSQQP-SQLNAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQ 88 (294)
Q Consensus 20 ~~~t~~~~~~~~~~~g~~l~~v----------~k~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~Rk 88 (294)
+.+||..||. +.+.|+|+..+ .++.+.... .+..+...++ ++... .......++++|++++||
T Consensus 125 ~~asP~~r~l-a~~~gidl~~i~gsG~~Gri~~~Dv~~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~r~ 198 (411)
T PRK11856 125 AKASPAVRKL-ARELGVDLSTVKGSGPGGRITKEDVEAAAAAAAPAAAAAAA---AAAAP--PAAAAEGEERVPLSGMRK 198 (411)
T ss_pred ccCChHHHHH-HHHcCCCHHHCcCCCCCCeEEHHHHHHHHhcccccCCCCCC---CCCCC--CcccCCCceEeeCcHHHH
Confidence 3579999999 99999999773 222221100 0000000000 00000 001122467899999999
Q ss_pred HHHHHHHHhhccCcEEEEEEEEeeccccccCCCCCCCcchhhhhhccccCceehhHHHhhhcCCccccCCceeecccccC
Q psy7777 89 RIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAPCNGIIEERFVEDGATVKAGQQLFKIKPTVCTPNSKYRAEKKLR 168 (294)
Q Consensus 89 ~ia~~m~~S~~~iP~~~~~~evDvt~l~~~~~~~r~~~n~l~~~~~~~~~~~ikAva~Al~~~P~l~~~N~~~~~~~~~~ 168 (294)
.||++|++||.++|||+++.+||+|+|.+++.. ++... .+++..++++||+++||++||+| |++|.
T Consensus 199 ~ia~~m~~s~~~~P~~~~~~~idvt~l~~~~k~----~~~~~-~~ls~~~~~ikav~~Al~~~P~~---n~~~~------ 264 (411)
T PRK11856 199 AIAKRMVESKREIPHFTLTDEVDVTALLALRKQ----LKAIG-VKLTVTDFLIKAVALALKKFPEL---NASWD------ 264 (411)
T ss_pred HHHHHHHHHhhcCCeEEEEEEEEhHHHHHHHHH----HHhhc-cCccHHHHHHHHHHHHHHhCcHh---heEEe------
Confidence 999999999999999999999999997542110 00000 01223367999999999999999 99999
Q ss_pred CCCeeEeCCCCCceEEEEecCCCeEEeeecC------------------------CCCCCCCCCeeEEeecCCCCCCCce
Q psy7777 169 PGRELNSGPPECKPSVAVATPKGLVVPVIRN------------------------LAIEDSDGGTFTISNGGVFGSLLGT 224 (294)
Q Consensus 169 ~~~~i~~~~~~vnigvAV~t~~GL~vPvi~d------------------------L~~~d~~ggTftISNlG~~G~~~ft 224 (294)
++.+++ |+++|||+||++++||++|+|++ |.++|++||||||||+||||+.+|+
T Consensus 265 -~~~i~~-~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei~~~~~~~~~~ar~~~l~~~~~~~gtftiSn~G~~g~~~~~ 342 (411)
T PRK11856 265 -DDAIVL-KKYVNIGIAVATDGGLIVPVIRDADKKSLFELAREIKDLAEKAREGKLKPEELQGGTFTISNLGMFGGDYFT 342 (411)
T ss_pred -CCEEEE-cCCcCEEEEEECCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeCCCccCCCceE
Confidence 777999 99999999999999999999987 7888999999999999999999999
Q ss_pred eccCCCCceEEEeeceeeeEEEeCCeEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhhCHHHhhcC
Q psy7777 225 PIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKIKAAVEDPRIILAG 293 (294)
Q Consensus 225 pii~~Pq~ail~vG~i~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~lll~ 293 (294)
||||+||+|||++|+++++|++.+|+++++.+|||||+||||++||+++++||+.|+++||+|..||+.
T Consensus 343 Pii~~p~~ail~iG~~~~~~~~~~g~~~~~~~m~lslt~DHRviDG~~aa~Fl~~l~~~le~p~~ll~~ 411 (411)
T PRK11856 343 PIINPPEVAILGVGAIVERPVVVDGEIVVRKVMPLSLSFDHRVIDGADAARFLKALKELLENPALLLLE 411 (411)
T ss_pred CccCCCceEEEEcccceEEEEEECCEEEEEEEEEEeEEeehhhcCcHHHHHHHHHHHHHHhCHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999874
No 17
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=2.6e-51 Score=399.39 Aligned_cols=257 Identities=40% Similarity=0.586 Sum_probs=208.3
Q ss_pred CCCcCCccchhhccccCCcchhhhhh----------hhhhcCCcccchhhhcccCCCCCCCCCcCCCCCcceEeeCcHHH
Q psy7777 18 KEISGTRSEQRVKMNRNGRNLQKRSK----------YRQSQQPSQLNAIEAATVKLPPADPTKEISGTRSEQRVKMNRMR 87 (294)
Q Consensus 18 ~~~~~t~~~~~~~~~~~g~~l~~v~k----------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~s~~R 87 (294)
.+..++|..||. +..+|+|+..+.. +.+.....+ .+.+....+. ..........++++|++++|
T Consensus 111 ~~~~asP~~r~l-a~e~gidl~~v~gtG~~gri~~~d~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~r 184 (404)
T COG0508 111 GRVLASPAVRRL-AREAGIDLSKVKGTGPGGRITKKDVEAAVAEK---AAAAAAPAPA--AAAPASAAGEEERVPMSRIR 184 (404)
T ss_pred cccccCcchhhh-hhhcCCCHHHcCCcCCCCceeccchhhhcccc---cccccccccc--cCCcccccCCceeeecccHH
Confidence 346699999999 9999999986331 111111111 0011000010 01111455678999999999
Q ss_pred HHHHHHHHHhhccCcEEEEEEEEeeccccccCCCCCCCcchhhhhh---ccccCceehhHHHhhhcCCccccCCceeecc
Q psy7777 88 QRIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAPCNGIIEER---FVEDGATVKAGQQLFKIKPTVCTPNSKYRAE 164 (294)
Q Consensus 88 k~ia~~m~~S~~~iP~~~~~~evDvt~l~~~~~~~r~~~n~l~~~~---~~~~~~~ikAva~Al~~~P~l~~~N~~~~~~ 164 (294)
|.|+++|.+|+.++||+|.+.++|++.|.++ |++++....++ ++..+|++||++.||++||.+ |++++.
T Consensus 185 k~ia~~m~~s~~~~p~~t~~~evd~t~l~~l----r~~~~~~~~~~g~klt~~~f~~kA~~~Alk~~P~~---Na~~~~- 256 (404)
T COG0508 185 KAIAERMVESKQTIPHLTLFNEVDMTKLMAL----RKKLKEEFEKKGVKLTFLSFLVKAVVKALKKFPEV---NASIDG- 256 (404)
T ss_pred HHHHHHHHHHHhhCCeEEEEeeecHHHHHHH----HHHhhhhhcccCccccHHHHHHHHHHHHHHhCCcc---ceeecc-
Confidence 9999999999999999999999999997653 43333322111 112357999999999999999 988872
Q ss_pred cccCCCCeeEeCCCCCceEEEEecCCCeEEeeecC------------------------CCCCCCCCCeeEEeecCCCCC
Q psy7777 165 KKLRPGRELNSGPPECKPSVAVATPKGLVVPVIRN------------------------LAIEDSDGGTFTISNGGVFGS 220 (294)
Q Consensus 165 ~~~~~~~~i~~~~~~vnigvAV~t~~GL~vPvi~d------------------------L~~~d~~ggTftISNlG~~G~ 220 (294)
++..+++ ++++|||+||++++||++|||+| |+++||+||||||||+|+||+
T Consensus 257 ----~~~~iv~-~~~~~igiAv~t~~GLvvpVir~a~~~~~~~i~~~i~~la~~aR~~kl~~~e~~ggtftisn~G~~g~ 331 (404)
T COG0508 257 ----DGEEIVY-HKYVNIGIAVDTPRGLVVPVIRDADKKSLAEIAKEIKDLAKKARDGKLTPEEMQGGTFTISNLGMFGS 331 (404)
T ss_pred ----ccceEEE-eccccEEEEEecCCCeEecceeecccCCHHHHHHHHHHHHHHHHhcCcCHHHhCCceEEeecCCcccc
Confidence 1118999 99999999999999999999998 999999999999999999999
Q ss_pred CCceeccCCCCceEEEeeceeeeEEEeCCeEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhhCHHHhhcC
Q psy7777 221 LLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKIKAAVEDPRIILAG 293 (294)
Q Consensus 221 ~~ftpii~~Pq~ail~vG~i~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~lll~ 293 (294)
..|+||||+||+||||+|++.++|+|.++++.+|++|+||||||||++||+++++||.+++++||+|..|+++
T Consensus 332 ~~~tpiin~Pq~aILgv~~~~~rpv~~~~~i~~~~mm~lsls~DHRviDGa~aa~Fl~~ik~~le~p~~ll~~ 404 (404)
T COG0508 332 LMFTPIINPPQVAILGVGAIEERPVVVGGEIVVRPMMYLSLSYDHRVIDGAEAARFLVALKELLEDPERLLLE 404 (404)
T ss_pred ceecccccChhHheeeccccccCceEecCceeeEeeEeecccccccccccHHHHHHHHHHHHHhcChhhhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999874
No 18
>KOG0557|consensus
Probab=100.00 E-value=8.7e-50 Score=384.93 Aligned_cols=256 Identities=28% Similarity=0.370 Sum_probs=209.1
Q ss_pred CCCCcCCccchhhccccCCcchhh--------------hhhhhhh-cCCcccchhhhcccCCCCCCCCCcCCCCCcceEe
Q psy7777 17 TKEISGTRSEQRVKMNRNGRNLQK--------------RSKYRQS-QQPSQLNAIEAATVKLPPADPTKEISGTRSEQRV 81 (294)
Q Consensus 17 ~~~~~~t~~~~~~~~~~~g~~l~~--------------v~k~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (294)
..|++.+|.++.+ +...|+|+.. +.++..+ +..++.+.++.++..+++ ....+...|+++
T Consensus 171 ~~r~~asP~Ak~l-a~e~~l~ls~i~gtGP~Gri~k~Di~~~v~~~~~k~~~~~~~~~~~~~~~----a~~~~~~~~~di 245 (470)
T KOG0557|consen 171 GGRVFASPLAKKL-AEEKGLELSSIPGTGPHGRILKGDIEKHVGSGKKKSAKAPKASAPPPAPA----APPVSLPGYEDI 245 (470)
T ss_pred CCceecChHHHHH-HHHhCCccccCcCcCCCceeehhhHHHhhcccccccccCCCccCCCcCcc----CCcCCCCccccc
Confidence 4599999999999 9999999976 2333222 111111111111111111 122333449999
Q ss_pred eCcHHHHHHHHHHHHhhccCcEEEEEEEEeeccccccCCCCCCCcchhhh--hhccccCceehhHHHhhhcCCccccCCc
Q psy7777 82 KMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAPCNGIIE--ERFVEDGATVKAGQQLFKIKPTVCTPNS 159 (294)
Q Consensus 82 p~s~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~~~~~r~~~n~l~~--~~~~~~~~~ikAva~Al~~~P~l~~~N~ 159 (294)
|+++||+.|++||.+|+.++||||++.++++++|..+ |+.+| ..+ .+.+-++|++||++.||+++|++ |+
T Consensus 246 P~s~mr~viakrl~eSk~~IPh~yvt~~~~~d~ll~~----r~~ln-~~~~~~~vsvndliiKAaa~al~~vPev---Ns 317 (470)
T KOG0557|consen 246 PVSNMRRVIAKRLLESKQTIPHYYVTVDVNLDKLLAL----REKLN-FEKSIKKVSLNDLIAKAAALALAKVPEV---NS 317 (470)
T ss_pred ccchhhhhhhhhhhhhhcCCCeEEEeeeeehHHHHHH----HHHhh-hcccCcccchhHHHHHHHHHHHhcCCcc---cc
Confidence 9999999999999999999999999999999997542 33333 101 22344589999999999999999 99
Q ss_pred eeecccccCCCCeeEeCCCCCceEEEEecCCCeEEeeecC------------------------CCCCCCCCCeeEEeec
Q psy7777 160 KYRAEKKLRPGRELNSGPPECKPSVAVATPKGLVVPVIRN------------------------LAIEDSDGGTFTISNG 215 (294)
Q Consensus 160 ~~~~~~~~~~~~~i~~~~~~vnigvAV~t~~GL~vPvi~d------------------------L~~~d~~ggTftISNl 215 (294)
+|.. +..|++ ++.|||++||+|++||++|+|+| |.|++|+|||||||||
T Consensus 318 ~w~~------~~~i~~-~~~VdisvAVat~~GLitPii~na~~kgl~~is~~vkel~~kAr~~kL~Pee~qgGtftiSNL 390 (470)
T KOG0557|consen 318 SWMD------ELVIRQ-LSSVDISVAVATPNGLITPIIQNADAKGLSTISSKVKELAQKAREGKLQPEEFQGGTFTLSNL 390 (470)
T ss_pred eecC------Cccccc-cCcCChhheeeccCcccchhhhhcccccHHHHHHHHHHHHHHHhhccCCcccccCCceeHhhc
Confidence 9992 378888 99999999999999999999998 9999999999999999
Q ss_pred CCCCCCCceeccCCCCceEEEeeceeeeEEE---eCCeEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhhCHHHhhc
Q psy7777 216 GVFGSLLGTPIINPPQSAILGMHGTFERPVA---IKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKIKAAVEDPRIILA 292 (294)
Q Consensus 216 G~~G~~~ftpii~~Pq~ail~vG~i~~~pv~---~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~lll 292 (294)
||||++.|+.||||||.|||++|..+...|. .++++.....|+||||+|||++||+.+++||+.|+++||||+.|||
T Consensus 391 Gmf~V~~F~AiinPpq~~ILavg~~~~~~v~d~~~~~~~~~~~~m~VTls~DhRvvdga~aa~Fl~~fk~~~EnP~~~ll 470 (470)
T KOG0557|consen 391 GMFGVDMFTAIINPPQADILAVGAATPSVVPDANGPEKFSVINAMTVTLSADHRVVDGAVAARFLDEFKENLENPEFLLL 470 (470)
T ss_pred cCcCccccccccCCchhhhhhcccCccccccCCCcccccceeeeeEEEEecCcceecHHHHHHHHHHHHHHhhCHHhhhC
Confidence 9999999999999999999999999887764 2467999999999999999999999999999999999999999986
No 19
>KOG0558|consensus
Probab=100.00 E-value=1.1e-47 Score=358.45 Aligned_cols=260 Identities=27% Similarity=0.367 Sum_probs=210.1
Q ss_pred CcCCccchhhccccCCcchhhhhhhh-------------hhcCCcccchhhhcc-cCCCCCCCCCcCC-CCCcceEeeCc
Q psy7777 20 ISGTRSEQRVKMNRNGRNLQKRSKYR-------------QSQQPSQLNAIEAAT-VKLPPADPTKEIS-GTRSEQRVKMN 84 (294)
Q Consensus 20 ~~~t~~~~~~~~~~~g~~l~~v~k~a-------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~vp~s 84 (294)
.-+||.-||. |-.+|+||+++..-+ ..|++.......+.. ..-|++.|....+ .-...+.+|+.
T Consensus 171 tlaTPaVRrl-A~e~~idla~v~gtGKdGRvLKeDvL~fl~q~pg~~~~~~~~~~a~~~~~~ps~~a~~~~~~Dkt~plr 249 (474)
T KOG0558|consen 171 TLATPAVRRL-AKENGIDLAEVTGTGKDGRVLKEDVLRFLGQVPGFVTDPSPSEHAVIPGPSPSTKASSNLEADKTVPLR 249 (474)
T ss_pred cccCHHHHHH-HHHhCCceEeeeccCCCCcchHHHHHHHhccCCCCccCCCCceeecCCCCCCcccccCcccccceeech
Confidence 4478888898 999999998843322 234444433322211 1112222222222 22346789999
Q ss_pred HHHHHHHHHHHHhhccCcEEEEEEEEeeccccccCCCCCCCcchhhhhhcccc---CceehhHHHhhhcCCccccCCcee
Q psy7777 85 RMRQRIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAPCNGIIEERFVED---GATVKAGQQLFKIKPTVCTPNSKY 161 (294)
Q Consensus 85 ~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~~~~~r~~~n~l~~~~~~~~---~~~ikAva~Al~~~P~l~~~N~~~ 161 (294)
+++|+|-+.|+++. .||||.+.+|||+|.|.++ |.+++....++--+. .|+|||++.||.+||.+ |+++
T Consensus 250 Gf~rAMvKtMt~al-kiPHF~y~dEIn~~sLvkl----r~elk~~a~e~~IKltfmPf~iKaaSlaL~kyP~v---Nss~ 321 (474)
T KOG0558|consen 250 GFSRAMVKTMTEAL-KIPHFGYVDEINCDSLVKL----RQELKENAKERGIKLTFMPFFIKAASLALLKYPIV---NSSF 321 (474)
T ss_pred hHHHHHHHHHHHHh-cCCccccccccChHHHHHH----HHHHhhhhhhcCceeeehHHHHHHHHHHHhhCccc---cchh
Confidence 99999999999998 5999999999999997664 222221111111111 46999999999999999 9999
Q ss_pred ecccccCCCCeeEeCCCCCceEEEEecCCCeEEeeecC------------------------CCCCCCCCCeeEEeecCC
Q psy7777 162 RAEKKLRPGRELNSGPPECKPSVAVATPKGLVVPVIRN------------------------LAIEDSDGGTFTISNGGV 217 (294)
Q Consensus 162 ~~~~~~~~~~~i~~~~~~vnigvAV~t~~GL~vPvi~d------------------------L~~~d~~ggTftISNlG~ 217 (294)
+ ++-..|++ +..+|||+|++||+||+||.|+| |+|+|+.|||||+||+|.
T Consensus 322 d-----~~~e~ii~-K~sHNIgvAmdT~~GLvVPNiKN~q~~si~eIakeLnrLq~~g~~~qls~~D~t~GTftLSNIG~ 395 (474)
T KOG0558|consen 322 D-----EESENIIL-KGSHNIGVAMDTEQGLVVPNIKNVQSLSIFEIAKELNRLQELGANGQLSPEDLTGGTFTLSNIGA 395 (474)
T ss_pred h-----hhhhhhhh-hcccceeEEecCCCceeccCccccchhhHHHHHHHHHHHHHhhhcCCcChhhccCceEEeeeccc
Confidence 9 45788999 99999999999999999999999 899999999999999999
Q ss_pred CCCCCceeccCCCCceEEEeeceeeeEEEe-CCeEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhhCHHHhhcCC
Q psy7777 218 FGSLLGTPIINPPQSAILGMHGTFERPVAI-KGQVVVKPMMYVALTYDHRLIDGREAVLFLRKIKAAVEDPRIILAGL 294 (294)
Q Consensus 218 ~G~~~ftpii~~Pq~ail~vG~i~~~pv~~-~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~lll~~ 294 (294)
+|+++.+|+|++||+||.++|+|+..|.++ .|++....+|.++|++||||+||+..|||-+.||+|||+|..|||+|
T Consensus 396 IGGtf~~P~i~~PeVAIgAlGrie~vPrFnkk~~V~~a~IM~VswsADHRViDGaTmarFsn~WK~YlE~Pa~mll~l 473 (474)
T KOG0558|consen 396 IGGTFASPVIMPPEVAIGALGRIEKVPRFNKKGEVYPASIMMVSWSADHRVIDGATMARFSNQWKEYLENPALMLLQL 473 (474)
T ss_pred ccccccCcccccchhhhhhccccccccccCCCCCEEEeEEEEEEeecCceeeccHHHHHHHHHHHHHhhCHHHHhhcc
Confidence 999999999999999999999999999996 58999999999999999999999999999999999999999999986
No 20
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=3.8e-45 Score=376.10 Aligned_cols=196 Identities=23% Similarity=0.318 Sum_probs=172.2
Q ss_pred cceEeeCcHHHHHHHHHHHHhhccCcEEEEEEEEeeccccccCCCCCCCcchhhh-hhccc---cCceehhHHHhhhcCC
Q psy7777 77 SEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAPCNGIIE-ERFVE---DGATVKAGQQLFKIKP 152 (294)
Q Consensus 77 ~~~~vp~s~~Rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~~~~~r~~~n~l~~-~~~~~---~~~~ikAva~Al~~~P 152 (294)
+.+.+||++++++||++|..|+ ++|++|...+|+++.|.+ +|..+|.-++ .+-.+ .++++||+++||++||
T Consensus 114 ~~~~~~LrG~a~aiAkNM~aSL-~vPtaTsvr~Ip~k~L~d----nR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P 188 (1228)
T PRK12270 114 EDEVTPLRGAAAAVAKNMDASL-EVPTATSVRAVPAKLLID----NRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFP 188 (1228)
T ss_pred CcceeecccHHHHHHHHHHhhh-ccCceeeeecccHHHHHH----HHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCc
Confidence 3478999999999999999998 599999999999999755 3444443222 11122 2579999999999999
Q ss_pred ccccCCceeecccccCCCC-eeEeCCCCCceEEEEecC-----CCeEEeeecC------------------------CCC
Q psy7777 153 TVCTPNSKYRAEKKLRPGR-ELNSGPPECKPSVAVATP-----KGLVVPVIRN------------------------LAI 202 (294)
Q Consensus 153 ~l~~~N~~~~~~~~~~~~~-~i~~~~~~vnigvAV~t~-----~GL~vPvi~d------------------------L~~ 202 (294)
.+ |++|.+ .+|. .|++ +++||||+||+++ +||+||+||| |++
T Consensus 189 ~m---Nasy~~----~DGKp~iv~-~~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~ay~dLV~KAR~gKLt~ 260 (1228)
T PRK12270 189 NM---NRHYAE----VDGKPTLVT-PAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLTA 260 (1228)
T ss_pred hh---hceeec----cCCCceeec-cCCcceEEEEecCCCCCCcceeeccccccccCCHHHHHHHHHHHHHHHHcCCCCH
Confidence 99 999983 1233 4889 9999999999998 5899999998 999
Q ss_pred CCCCCCeeEEeecCCCCCCCceeccCCCCceEEEeeceeeeEEEe------CCeEEEEeEEEEEEeecccccchHHHHHH
Q psy7777 203 EDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAI------KGQVVVKPMMYVALTYDHRLIDGREAVLF 276 (294)
Q Consensus 203 ~d~~ggTftISNlG~~G~~~ftpii~~Pq~ail~vG~i~~~pv~~------~g~i~~r~~m~lsls~DHRviDGa~aa~F 276 (294)
+||+||||||||+|+||+.+|+||||+||+||||+|++...|++. ++++.++++|+||+|||||+|||+++++|
T Consensus 261 eD~~GgTFTISN~G~iGt~~ftPILnppQ~AILGVGAi~~p~~f~gas~~~l~~i~i~kvMtLTlTyDHRVIdGA~sg~F 340 (1228)
T PRK12270 261 DDFQGTTISLTNPGGIGTVHSVPRLMKGQGAIIGVGAMEYPAEFQGASEERLAELGISKVMTLTSTYDHRIIQGAESGEF 340 (1228)
T ss_pred HHhCCceEEEecCCcccccceeeeecCCceEEEeccccccCceecCcccccccccceeeeEEeeeeccceeeccHhHHHH
Confidence 999999999999999999999999999999999999999888874 35899999999999999999999999999
Q ss_pred HHHHHHHhh
Q psy7777 277 LRKIKAAVE 285 (294)
Q Consensus 277 l~~lk~~Le 285 (294)
|+.|+++||
T Consensus 341 L~~ik~lLe 349 (1228)
T PRK12270 341 LRTIHQLLL 349 (1228)
T ss_pred HHHHHHHHh
Confidence 999999998
No 21
>PRK13757 chloramphenicol acetyltransferase; Provisional
Probab=99.82 E-value=1.4e-19 Score=163.63 Aligned_cols=164 Identities=12% Similarity=0.124 Sum_probs=127.6
Q ss_pred HHHHHHHHHHhhccCcEEEEEEEEeeccccccCCCCCCCcchhhhhhccccC-----ceehhHHHhhhcCCccccCCcee
Q psy7777 87 RQRIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAPCNGIIEERFVEDG-----ATVKAGQQLFKIKPTVCTPNSKY 161 (294)
Q Consensus 87 Rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~~~~~r~~~n~l~~~~~~~~~-----~~ikAva~Al~~~P~l~~~N~~~ 161 (294)
||.-.+.-... .-|+|+++.+||+|+| ++ .+++++ .+++|+++|++++|+| +.++
T Consensus 18 RkehF~~f~~~--~~~~fsiT~~iDiT~l--------------~~-~~K~~~~~fy~~~ly~v~kavN~~~eF---R~r~ 77 (219)
T PRK13757 18 RKEHFEAFQSV--AQCTYNQTVQLDITAF--------------LK-TVKKNKHKFYPAFIHILARLMNAHPEF---RMAM 77 (219)
T ss_pred cHHHHHHHhcC--CCCceEEEEEEEHHHH--------------HH-HHHHcCCChHHHHHHHHHHHHhcCHhH---heEE
Confidence 44444444332 2455999999999994 43 233443 4999999999999999 9999
Q ss_pred ecccccCCCCeeEeCCCCCceEEEEecCCC-----eEEeeecC--------------------CCCCCCCCCeeEEeecC
Q psy7777 162 RAEKKLRPGRELNSGPPECKPSVAVATPKG-----LVVPVIRN--------------------LAIEDSDGGTFTISNGG 216 (294)
Q Consensus 162 ~~~~~~~~~~~i~~~~~~vnigvAV~t~~G-----L~vPvi~d--------------------L~~~d~~ggTftISNlG 216 (294)
. +++++. ++.++.+.+|..+++ +++|.-.| +.++......|.||+++
T Consensus 78 ~-------~~~v~~-~D~i~ps~Ti~~~~~~tFs~~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~iP 149 (219)
T PRK13757 78 K-------DGELVI-WDSVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANP 149 (219)
T ss_pred E-------CCeEEE-EeEEeeeEEEEeCCCceEEEEEecCcCCHHHHHHHHHHHHHHHhcCccccCCCCCCCeEEeeccc
Confidence 8 788888 999999999997663 45677666 33444466899999999
Q ss_pred CCCCCCceeccC-CCC--ceEEEeeceeeeEEEeCCeEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhhC
Q psy7777 217 VFGSLLGTPIIN-PPQ--SAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKIKAAVED 286 (294)
Q Consensus 217 ~~G~~~ftpii~-~Pq--~ail~vG~i~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~ 286 (294)
|+..+.++.-++ ... +.++++|++.++ +| |.+||||+.++|.++||.|+++|++.|+++|++
T Consensus 150 W~sFTs~~~~~~~~~~~~~P~it~GKy~~~----~g----r~~mPvSvqvHHa~~DG~Hv~~F~~~lQ~~~~~ 214 (219)
T PRK13757 150 WVSFTSFDLNVANMDNFFAPVFTMGKYYTQ----GD----KVLMPLAIQVHHAVCDGFHVGRMLNELQQYCDE 214 (219)
T ss_pred CcCccccccccccCCCCcCcEEEeeceEEE----CC----EEEEEEEEEEehhccchHHHHHHHHHHHHHHHH
Confidence 987776644333 332 459999999863 77 678999999999999999999999999999976
No 22
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2.3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....
Probab=99.81 E-value=3.4e-19 Score=159.79 Aligned_cols=149 Identities=16% Similarity=0.101 Sum_probs=109.2
Q ss_pred cCcEEEEEEEEeeccccccCCCCCCCcchhhhhhccccC-----ceehhHHHhhhcCCccccCCceeecccccCCCCeeE
Q psy7777 100 VNAMLTTFNEIDMRKESNTSMPVPAPCNGIIEERFVEDG-----ATVKAGQQLFKIKPTVCTPNSKYRAEKKLRPGRELN 174 (294)
Q Consensus 100 ~iP~~~~~~evDvt~l~~~~~~~r~~~n~l~~~~~~~~~-----~~ikAva~Al~~~P~l~~~N~~~~~~~~~~~~~~i~ 174 (294)
..|+|+++.+||+|+| ++ ..++.+ .+++++++|++++|+| +.++.+ +++++
T Consensus 24 ~~p~~svT~~lDvT~l--------------~~-~~K~~~~~Ff~~~ly~i~ka~N~~~ef---R~ri~~------~g~v~ 79 (206)
T PF00302_consen 24 DNPYFSVTVNLDVTNL--------------YK-YAKEKGLSFFPAYLYAIMKAANEIPEF---RYRIVD------DGEVV 79 (206)
T ss_dssp SBEEEEEEEEEE-HHH--------------HH-HHHHTT--HHHHHHHHHHHHHTTSGGG---CEEEET------TSCEE
T ss_pred CCceEecceeEEhHHH--------------HH-HHHHcCCCcHHHHHHHHHHHHhcCHHH---heeeeC------CCcEE
Confidence 5799999999999994 44 233443 4999999999999999 999992 44999
Q ss_pred eCCCCCceEEEEecCC-C----eEEeeecC--------------------CCCCC-CCCCeeEEeecCCCCCCCceeccC
Q psy7777 175 SGPPECKPSVAVATPK-G----LVVPVIRN--------------------LAIED-SDGGTFTISNGGVFGSLLGTPIIN 228 (294)
Q Consensus 175 ~~~~~vnigvAV~t~~-G----L~vPvi~d--------------------L~~~d-~~ggTftISNlG~~G~~~ftpii~ 228 (294)
+ ++.++++.+|..++ + +++|+..| +.+++ .....|.+|+++|+.-+.++.-++
T Consensus 80 ~-~d~i~ps~Tv~~~~~~tFs~~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~S~lPW~~FTs~~~~~~ 158 (206)
T PF00302_consen 80 Y-YDRIDPSYTVFHKDDETFSFCWTEYDEDFEEFYANYEADIERYKESKGLFPKPNDPDNLIYISCLPWVSFTSFSHPVP 158 (206)
T ss_dssp E-ESS-EEEEEEEETTTTEEEEEEE---SSHHHHHHHHHHHHHHHTTS-SSSTTCCHHSSEEEEEEETTS--SEEEEEES
T ss_pred E-ECCcceeeeEEeCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHhccccccCCCCCCcCEEEEecccceeccccccccc
Confidence 9 99999999999754 4 45777776 43333 345799999999987777644333
Q ss_pred -CCC--ceEEEeeceeeeEEEeCCeEEEEeEEEEEEeecccccchHHHHHHHHHHH
Q psy7777 229 -PPQ--SAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKIK 281 (294)
Q Consensus 229 -~Pq--~ail~vG~i~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk 281 (294)
.+. ..++++|++.++ +| |.+||||+.++|.++||.|+++|++.|+
T Consensus 159 ~~~~~~~P~it~GK~~~~----~g----r~~mPvsiqvhHa~~DG~Hv~~F~~~lQ 206 (206)
T PF00302_consen 159 NGKDDSIPRITWGKYFEE----NG----RLLMPVSIQVHHALVDGYHVGQFFEELQ 206 (206)
T ss_dssp STTT-SS-EEEEE--EEE----TT----EEEEEEEEEEETTT--HHHHHHHHHHHH
T ss_pred CCCcccccEEEeeeeEeE----CC----EEEEEEEEEEecccccHHHHHHHHHHhC
Confidence 222 469999999874 78 6789999999999999999999999986
No 23
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]
Probab=99.48 E-value=2.8e-13 Score=119.92 Aligned_cols=158 Identities=12% Similarity=0.057 Sum_probs=119.2
Q ss_pred cCcEEEEEEEEeeccccccCCCCCCCcchhhhhhccccC---ceehhHHHhhhcCCccccCCceeecccccCCCCeeEeC
Q psy7777 100 VNAMLTTFNEIDMRKESNTSMPVPAPCNGIIEERFVEDG---ATVKAGQQLFKIKPTVCTPNSKYRAEKKLRPGRELNSG 176 (294)
Q Consensus 100 ~iP~~~~~~evDvt~l~~~~~~~r~~~n~l~~~~~~~~~---~~ikAva~Al~~~P~l~~~N~~~~~~~~~~~~~~i~~~ 176 (294)
..||+.++-+.|+|.+.. .+++. ... .+|+|+.+++++|++| +.++. ++.+.+
T Consensus 27 ~~p~y~i~~~LDvtn~~~-----------~vk~~--~l~Ff~a~l~avtr~~n~~~EF---Rlr~~-------~~~~~~- 82 (219)
T COG4845 27 QYPHYDINLQLDVTNFYG-----------YVKEN--GLSFFPALLYAVTRCANRHQEF---RLRIQ-------NGQLGY- 82 (219)
T ss_pred ccceEeeeeeeehhHHHH-----------HHHHc--CCcchHHHHHHHHHHhcccHHh---Hhhhc-------CCeeEE-
Confidence 589999999999999321 22211 112 3999999999999999 99999 899999
Q ss_pred CCCCceEEEEecCCC-----eEEeeecC--------------------CCCCCC-CCCeeEEeecCCCCCCCceeccCC-
Q psy7777 177 PPECKPSVAVATPKG-----LVVPVIRN--------------------LAIEDS-DGGTFTISNGGVFGSLLGTPIINP- 229 (294)
Q Consensus 177 ~~~vnigvAV~t~~G-----L~vPvi~d--------------------L~~~d~-~ggTftISNlG~~G~~~ftpii~~- 229 (294)
++.+++.++|.++++ |.++...| +.+++- ......+||++|+.-+.++--++.
T Consensus 83 ~d~v~p~~tv~~~~~e~Fs~l~~e~~~~~~dF~q~y~~~ie~~~~~~~~~~k~~~~~~~~~~s~lPWlsFtslS~~~~~~ 162 (219)
T COG4845 83 WDNVPPMYTVFHGETETFSVLWTEYQEDYEDFAQLYIEDIEQYGANNYERAKDPTPCDVYIFSNLPWLSFTSLSHHYRRN 162 (219)
T ss_pred eecCCcceEEEcCCCcEEEEEeccccccHHHHHHHHHHHHHHhccCcccccCCCCcceeEEeccccccceeeeeeeccCC
Confidence 999999999999664 45666655 222222 235678999988644433222221
Q ss_pred -C-CceEEEeeceeeeEEEeCCeEEEEeEEEEEEeecccccchHHHHHHHHHHHHHhhCHHH
Q psy7777 230 -P-QSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKIKAAVEDPRI 289 (294)
Q Consensus 230 -P-q~ail~vG~i~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~~ 289 (294)
- -..|+.+|+..++ ||+ .+||+++.++|..+||.|+++|+..|++++++|..
T Consensus 163 k~~~~PiF~~Grf~~~----~Gk----l~lPlavq~hHA~vDG~Hi~~l~~~lQ~~~~~~~~ 216 (219)
T COG4845 163 KIYGQPIFYAGRFYEE----DGK----LTLPLAVQAHHANVDGFHIGQLFDQLQTLFSPPPC 216 (219)
T ss_pred ccccceeEeecceecc----CCe----EEEeEEEEecccccchhhHHHHHHHHHHHhcCCCC
Confidence 0 1348899988764 885 47999999999999999999999999999999854
No 24
>KOG0559|consensus
Probab=91.92 E-value=0.062 Score=52.23 Aligned_cols=41 Identities=37% Similarity=0.495 Sum_probs=33.6
Q ss_pred ccccCCCCCCCCCcCCccchhhccccCCcchhhhhhhhhhc
Q psy7777 8 TVKLPPADPTKEISGTRSEQRVKMNRNGRNLQKRSKYRQSQ 48 (294)
Q Consensus 8 ~~~~~~~~~~~~~~~t~~~~~~~~~~~g~~l~~v~k~a~~~ 48 (294)
.|++|.-+...+...+|+|+|+|||||+.+++++.|++|+.
T Consensus 210 ~v~~~~~~p~~~~~~~R~E~RVkMnRmR~RIA~RLKdsQNt 250 (457)
T KOG0559|consen 210 SVAQPKPPPSEGATPSRSERRVKMNRMRLRIAERLKDSQNT 250 (457)
T ss_pred cccCCCCCcccccCCCcchhhhhhHHHHHHHHHHHHhhhhh
Confidence 45666666666677799999999999999999999997654
No 25
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=67.43 E-value=2.1 Score=28.51 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=17.7
Q ss_pred CCCcCCccchhhccccCCcchhhh
Q psy7777 18 KEISGTRSEQRVKMNRNGRNLQKR 41 (294)
Q Consensus 18 ~~~~~t~~~~~~~~~~~g~~l~~v 41 (294)
+++.+||.++++ +.+.|||+..+
T Consensus 1 ~~i~asP~ar~l-a~e~gidl~~v 23 (39)
T PF02817_consen 1 GRIKASPAARKL-AAELGIDLSQV 23 (39)
T ss_dssp -SCCCSHHHHHH-HHHTT--GGGS
T ss_pred CCcccCHHHHHH-HHHcCCCcccc
Confidence 368899999999 99999999763
No 26
>PF02458 Transferase: Transferase family; InterPro: IPR003480 This family includes a number of transferase enzymes. These include anthranilate N-hydroxycinnamoyl/benzoyltransferase that catalyzes the first committed reaction of phytoalexin biosynthesis []. Deacetylvindoline 4-O-acetyltransferase (2.3.1.107 from EC) catalyzes the last step in vindoline biosynthesis is also a member of this family []. The motif HXXXD is probably part of the active site. The family also includes trichothecene 3-O-acetyltransferase.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 2BGH_B 2E1U_B 2E1T_A 2E1V_A 2XR7_A 3B30_A 2RKT_A 3B2S_A 2RKV_A 2ZBA_C ....
Probab=65.98 E-value=8.2 Score=37.43 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=26.4
Q ss_pred EEEEEeecccccchHHHHHHHHHHHHHhhCH
Q psy7777 257 MYVALTYDHRLIDGREAVLFLRKIKAAVEDP 287 (294)
Q Consensus 257 m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P 287 (294)
+-|+++++|.++||.-...|++.|.+.+...
T Consensus 147 ~~lg~~~~H~v~Dg~~~~~fl~~wa~~~rg~ 177 (432)
T PF02458_consen 147 LALGVSFHHAVADGTGFSQFLKAWAEICRGG 177 (432)
T ss_dssp EEEEEEEETTT--HHHHHHHHHHHHHHHHTT
T ss_pred eeeeeeceeccCcccchhHHHHHHHhhhcCC
Confidence 6789999999999999999999999988653
No 27
>PLN00140 alcohol acetyltransferase family protein; Provisional
Probab=64.50 E-value=7.7 Score=38.51 Aligned_cols=30 Identities=27% Similarity=0.480 Sum_probs=27.9
Q ss_pred EEEEEeecccccchHHHHHHHHHHHHHhhC
Q psy7777 257 MYVALTYDHRLIDGREAVLFLRKIKAAVED 286 (294)
Q Consensus 257 m~lsls~DHRviDGa~aa~Fl~~lk~~Le~ 286 (294)
+-|.++++|.+.||.-+..|++.|.+....
T Consensus 148 ~~lG~~~~H~v~Dg~s~~~Fl~~WA~~~rg 177 (444)
T PLN00140 148 IALGLCFSHKIIDAATASAFLDSWAANTRG 177 (444)
T ss_pred EEEEeeeceEcccHHHHHHHHHHHHHHhcC
Confidence 778999999999999999999999998865
No 28
>PLN02663 hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase
Probab=63.90 E-value=7.9 Score=38.05 Aligned_cols=30 Identities=13% Similarity=0.277 Sum_probs=27.8
Q ss_pred EEEEEeecccccchHHHHHHHHHHHHHhhC
Q psy7777 257 MYVALTYDHRLIDGREAVLFLRKIKAAVED 286 (294)
Q Consensus 257 m~lsls~DHRviDGa~aa~Fl~~lk~~Le~ 286 (294)
+-|+++++|.++||.-+..|++.|.+.+..
T Consensus 145 ~~lg~~~~H~v~Dg~g~~~fl~awa~~~rg 174 (431)
T PLN02663 145 VSLGVGMQHHAADGFSGLHFINTWSDMARG 174 (431)
T ss_pred EEEEEEecccccchHHHHHHHHHHHHHhcC
Confidence 678999999999999999999999998765
No 29
>PLN02481 Omega-hydroxypalmitate O-feruloyl transferase
Probab=59.14 E-value=11 Score=37.19 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=28.0
Q ss_pred EEEEEeecccccchHHHHHHHHHHHHHhhC
Q psy7777 257 MYVALTYDHRLIDGREAVLFLRKIKAAVED 286 (294)
Q Consensus 257 m~lsls~DHRviDGa~aa~Fl~~lk~~Le~ 286 (294)
+-|+++++|.++||.-+..|++.|.+.+..
T Consensus 158 ~~lg~~~~H~v~Dg~g~~~fl~~WA~~~rg 187 (436)
T PLN02481 158 FVLGLCMNHCMFDGIGAMEFVNSWGETARG 187 (436)
T ss_pred EEEEEEeccccccHHHHHHHHHHHHHHhcC
Confidence 779999999999999999999999998865
No 30
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=58.56 E-value=11 Score=37.48 Aligned_cols=32 Identities=16% Similarity=0.490 Sum_probs=29.4
Q ss_pred EEEEEEeecccccchHHHHHHHHHHHHHhhCH
Q psy7777 256 MMYVALTYDHRLIDGREAVLFLRKIKAAVEDP 287 (294)
Q Consensus 256 ~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P 287 (294)
...|.+.+||-+.||.-+..|.+.|-+.|..+
T Consensus 140 ~~~i~f~~~H~i~DG~Sg~~Fh~~ll~~L~~~ 171 (480)
T PF07247_consen 140 FQFIVFVFHHAIFDGMSGKIFHEDLLEALNSL 171 (480)
T ss_pred ceEEEEEecccccccHHHHHHHHHHHHHHhhc
Confidence 46789999999999999999999999999864
No 31
>PLN03157 spermidine hydroxycinnamoyl transferase; Provisional
Probab=55.51 E-value=13 Score=36.70 Aligned_cols=30 Identities=20% Similarity=0.391 Sum_probs=27.6
Q ss_pred EEEEEeecccccchHHHHHHHHHHHHHhhC
Q psy7777 257 MYVALTYDHRLIDGREAVLFLRKIKAAVED 286 (294)
Q Consensus 257 m~lsls~DHRviDGa~aa~Fl~~lk~~Le~ 286 (294)
+-|+++++|.++||.-...|++.|.+....
T Consensus 146 ~~lg~~~~H~v~Dg~~~~~fl~aWA~~~rg 175 (447)
T PLN03157 146 ISLGLGISHAVADGQSALHFISEWARIARG 175 (447)
T ss_pred EEEEEEeeccccchHhHHHHHHHHHHHhcC
Confidence 778999999999999999999999998754
No 32
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=54.10 E-value=27 Score=34.56 Aligned_cols=68 Identities=16% Similarity=0.263 Sum_probs=39.8
Q ss_pred CCeeEEeecCCCCCC-----CceeccC-CCC---ceEEEeeceeeeEEEeCCeEEEEeEEEEEEeecccccchHHH-HHH
Q psy7777 207 GGTFTISNGGVFGSL-----LGTPIIN-PPQ---SAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREA-VLF 276 (294)
Q Consensus 207 ggTftISNlG~~G~~-----~ftpii~-~Pq---~ail~vG~i~~~pv~~~g~i~~r~~m~lsls~DHRviDGa~a-a~F 276 (294)
++||.|||+|.+... ...-++. .++ .+.+.++-+.- .+| -|.+++|+=.-+++-.+. -.|
T Consensus 403 ~~t~evSNLG~~~~~~~~~~~I~~~~Fsq~~~~~~~~f~~~viS~----~~G------~L~i~~s~~~~~~~~~~~~~~~ 472 (480)
T PF07247_consen 403 RSTFEVSNLGVFDFEENGKWKIEDMVFSQSAGVIGSAFSFNVIST----KGG------GLNISISWQEGIVEDEEMEDEF 472 (480)
T ss_pred CCcEEEEeCCcccCCCCCCeEEEEEEEeCCCCCCcCCEEEEEEEc----CCC------ceEEEEEEeCCcccccchHHHH
Confidence 689999999999731 0111111 111 11233332321 234 388888888877776666 488
Q ss_pred HHHHHHHh
Q psy7777 277 LRKIKAAV 284 (294)
Q Consensus 277 l~~lk~~L 284 (294)
++.|++.|
T Consensus 473 ~~~~~~~~ 480 (480)
T PF07247_consen 473 MELFKQNL 480 (480)
T ss_pred HHHHHhhC
Confidence 88888764
No 33
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This bacteria-specific protein family includes a characterized, homodimeric, broad specificity acyltransferase from Acinetobacter sp. strain ADP1, active as wax ester synthase, as acyl coenzyme A:diacylglycerol acyltransferase, and as acyl-CoA:monoacylglycerol acyltransferase.
Probab=53.80 E-value=31 Score=33.73 Aligned_cols=30 Identities=17% Similarity=0.192 Sum_probs=24.2
Q ss_pred EEEEEEeecccccchHHHHHHHHHHHHHhhCH
Q psy7777 256 MMYVALTYDHRLIDGREAVLFLRKIKAAVEDP 287 (294)
Q Consensus 256 ~m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P 287 (294)
.|.+++++|-.++.. ..+|.+.+++.|++-
T Consensus 413 ~l~~~~~~d~~~~~d--~~~l~~~~~~~l~~l 442 (446)
T TIGR02946 413 QLDFGLLADRDAVPD--PQELADALEAALEEL 442 (446)
T ss_pred eEEEEEeechhhCCC--HHHHHHHHHHHHHHH
Confidence 589999999998884 777888888777653
No 34
>PF00668 Condensation: Condensation domain; InterPro: IPR001242 This domain is found in many multi-domain enzymes which synthesize peptide antibiotics. This domain catalyses a condensation reaction to form peptide bonds in non-ribosomal peptide biosynthesis. It is usually found to the carboxy side of a phosphopantetheine binding domain (pp-binding). It has been shown that mutations in the HHXXXDG motif abolish activity suggesting this is part of the active site []. ; PDB: 2JGP_A 2VSQ_A 1L5A_A 2JUG_A 1Q9J_A.
Probab=40.48 E-value=32 Score=30.39 Aligned_cols=32 Identities=19% Similarity=0.430 Sum_probs=26.5
Q ss_pred EEEEEeecccccchHHHHHHHHHHHHHhhCHH
Q psy7777 257 MYVALTYDHRLIDGREAVLFLRKIKAAVEDPR 288 (294)
Q Consensus 257 m~lsls~DHRviDGa~aa~Fl~~lk~~Le~P~ 288 (294)
..|-+.+||=++||.-...|+++|.+++++..
T Consensus 129 ~~l~~~~hH~i~Dg~S~~~l~~~l~~~y~~~~ 160 (301)
T PF00668_consen 129 YFLLISFHHIICDGWSLNILLRELLQAYAGLS 160 (301)
T ss_dssp EEEEEEEEGGG--HHHHHHHHHHHHHHHHHHH
T ss_pred chhcccccccccccccchhhhhhhHHhhhccc
Confidence 56788899999999999999999999887654
No 35
>PF07687 M20_dimer: Peptidase dimerisation domain This family only corresponds to M20 family; InterPro: IPR011650 This domain consists of 4 beta strands and two alpha helices which make up the dimerisation surface of members of the MEROPS peptidase family M20 []. This family includes a range of zinc exopeptidases: carboxypeptidases, dipeptidases and specialised aminopeptidases [].; GO: 0016787 hydrolase activity; PDB: 3GB0_A 2F7V_A 1R3N_C 2VL1_D 2V8V_C 1R43_B 2V8G_B 2V8H_D 2V8D_A 3PFE_A ....
Probab=34.48 E-value=38 Score=25.92 Aligned_cols=29 Identities=34% Similarity=0.326 Sum_probs=26.1
Q ss_pred EEEeecccccchHHHHHHHHHHHHHhhCH
Q psy7777 259 VALTYDHRLIDGREAVLFLRKIKAAVEDP 287 (294)
Q Consensus 259 lsls~DHRviDGa~aa~Fl~~lk~~Le~P 287 (294)
.++.+|-|+.++....++.+.+++.+++-
T Consensus 79 a~~~~~~R~~p~~~~~~i~~~i~~~~~~~ 107 (111)
T PF07687_consen 79 ATLTVDIRYPPGEDLEEIKAEIEAAVEKI 107 (111)
T ss_dssp EEEEEEEEESTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEECCCcchHHHHHHHHHHHHHHh
Confidence 67788999999999999999999999853
No 36
>PRK09294 acyltransferase PapA5; Provisional
Probab=20.09 E-value=88 Score=30.29 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=23.2
Q ss_pred EEEeecccccchHHHHHHHHHHHHHh
Q psy7777 259 VALTYDHRLIDGREAVLFLRKIKAAV 284 (294)
Q Consensus 259 lsls~DHRviDGa~aa~Fl~~lk~~L 284 (294)
+.+.+||=++||..+..|+++|.++.
T Consensus 113 l~l~~hH~i~DG~S~~~ll~el~~~Y 138 (416)
T PRK09294 113 VTLYIHHSIADAHHSASLLDELWSRY 138 (416)
T ss_pred EEEEeccEeEccccHHHHHHHHHHHH
Confidence 66788999999999999999998755
Done!