RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7777
(294 letters)
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent
acyltransferase, CAT-like, alpha and beta (2 L mixed
beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP:
c.43.1.1 PDB: 1e2o_A 1c4t_A
Length = 233
Score = 275 bits (706), Expect = 1e-93
Identities = 108/257 (42%), Positives = 140/257 (54%), Gaps = 63/257 (24%)
Query: 76 RSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDM------RKESNTSMPVPAPCNGI 129
RSE+RV M R+R+R+A+RL EA+N AMLTTFNE++M RK+
Sbjct: 2 RSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYG------------ 49
Query: 130 IEERFVED--------GATVKAGQQLFKIKPTVCTPNSKYRAEKKLRPGRELNSGPPECK 181
E F + VKA + K P V N+ + +
Sbjct: 50 --EAFEKRHGIRLGFMSFYVKAVVEALKRYPEV---NASIDGDDVVYHNY--------FD 96
Query: 182 PSVAVATPKGLVVPVIRN------------------------LAIEDSDGGTFTISNGGV 217
S+AV+TP+GLV PV+R+ L +ED GG FTI+NGGV
Sbjct: 97 VSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGV 156
Query: 218 FGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFL 277
FGSL+ TPIINPPQSAILGMH +RP+A+ GQV + PMMY+AL+YDHRLIDGRE+V FL
Sbjct: 157 FGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFL 216
Query: 278 RKIKAAVEDPRIILAGL 294
IK +EDP +L +
Sbjct: 217 VTIKELLEDPTRLLLDV 233
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide
acetyltransferase; 2-oxoacid dehydrogenases
acyltransferase; 2.50A {Listeria monocytogenes}
Length = 256
Score = 250 bits (640), Expect = 2e-83
Identities = 68/266 (25%), Positives = 111/266 (41%), Gaps = 63/266 (23%)
Query: 61 VKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDM------RK 114
+ L A PT + ++ + +N +R+ IA+ + ++ E+D R
Sbjct: 1 MSLKAAMPTPPVRSAAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRN 60
Query: 115 ESNTSMPVPAPCNGIIEERFVED--------GATVKAGQQLFKIKPTVCTPNSKYRAEKK 166
+++ F ++ +KA Q K P + NS + +K
Sbjct: 61 A--------------VKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQL---NSTWAGDKI 103
Query: 167 LRPGRELNSGPPECKPSVAVATPKGLVVPVIRN------------------------LAI 202
+ S+A+A L VPVI+N L+
Sbjct: 104 IEHAN--------INISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQ 155
Query: 203 EDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALT 262
D +GGTFT+++ G FGS+ IIN PQ+AIL + +RPV I + V+ M+ + L+
Sbjct: 156 ADMEGGTFTVNSTGSFGSVQSMGIINHPQAAILQVESIVKRPVIIDDMIAVRDMVNLCLS 215
Query: 263 YDHRLIDGREAVLFLRKIKAAVEDPR 288
DHR++DG A FL+ IKA VE
Sbjct: 216 IDHRILDGLLAGKFLQAIKANVEKIS 241
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics,
PSI-2, protein structure initiative; 2.00A
{Mycobacterium tuberculosis}
Length = 250
Score = 215 bits (549), Expect = 1e-69
Identities = 53/265 (20%), Positives = 94/265 (35%), Gaps = 60/265 (22%)
Query: 66 ADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAP 125
+ ++ + R+A+++ + E+ +
Sbjct: 2 SLAAARGGVGAGPDVRPVHGVHARMAEKMTLSHKEIPTAKASVEVICAE----------- 50
Query: 126 CNGIIEERFVEDGATVKAGQQLFKIKPTVCTPNSKYRAEKKLRPGRELNSGPPECKP--- 182
++ R A + ++ V L+ LNS +
Sbjct: 51 ---LLRLRDRFVSAAPEITPFALTLRLLVIA----------LKHNVILNSTWVDSGEGPQ 97
Query: 183 ---------SVAVATPKGLVVPVIRN------------------------LAIEDSDGGT 209
AT +GL+VPV+ + L + G T
Sbjct: 98 VHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGST 157
Query: 210 FTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLID 269
FT+SN G G G P+IN P++AILG+ RPV + G+VV +P M + +DHR++D
Sbjct: 158 FTVSNFGALGVDDGVPVINHPEAAILGLGAIKPRPVVVGGEVVARPTMTLTCVFDHRVVD 217
Query: 270 GREAVLFLRKIKAAVEDPRIILAGL 294
G + F+ +++ +E P L L
Sbjct: 218 GAQVAQFMCELRDLIESPETALLDL 242
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; oxidoreductase, multienzyme complex;
HET: TPW; 2.35A {Bacillus stearothermophilus} PDB:
3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Length = 428
Score = 219 bits (561), Expect = 4e-69
Identities = 72/290 (24%), Positives = 116/290 (40%), Gaps = 78/290 (26%)
Query: 48 QQPSQLNAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTF 107
++ A P A G E R KM+ +R+ IA+ + +++ +T
Sbjct: 168 AGGAKPAPAAAEEKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLM 227
Query: 108 NEIDM------RKESN----------TSMPVPAPCNGIIEERFVEDGATVKAGQQLFKIK 151
+E D+ RK+ T +P +V VKA +
Sbjct: 228 DEADVTKLVAHRKKFKAIAAEKGIKLTFLP------------YV-----VKALVSALREY 270
Query: 152 PTVCTPNSKYRAEKKLRPGREL------NSGPPECKPSVAVATPKGLVVPVIRN------ 199
P + N+ E E+ N G +A T +GL+VPVI++
Sbjct: 271 PVL---NTSIDDE-----TEEIIQKHYYNIG-------IAADTDRGLLVPVIKHADRKPI 315
Query: 200 ------------------LAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTF 241
L + G + TI+N G G TP+IN P+ AILG+
Sbjct: 316 FALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIA 375
Query: 242 ERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKIKAAVEDPRIIL 291
E+P+ G++V PM+ ++L++DHR+IDG A L IK + DP ++L
Sbjct: 376 EKPIVRDGEIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDPELLL 425
Score = 39.5 bits (93), Expect = 8e-04
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 12/97 (12%)
Query: 119 SMPVPAPCNGIIEERFVEDGATVKAGQQLFKIKPTVCTPNSKYRAEKKLRPGRELNSGPP 178
+ +P+P G + E V +G GQ L + + E++ E
Sbjct: 45 VVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPGYENMTFKGQEQEEAKKEEKTETVS 104
Query: 179 ECKPSVAVATP------------KGLVVPVIRNLAIE 203
+ + AVA + + +P +R A E
Sbjct: 105 KEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYARE 141
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A
{Thermoplasma acidophilum dsm 1728}
Length = 224
Score = 212 bits (543), Expect = 4e-69
Identities = 64/260 (24%), Positives = 102/260 (39%), Gaps = 76/260 (29%)
Query: 74 GTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDM------RKESNTSMPVPAPCN 127
E+ ++M+ +R+ I ++ +A+ + T E+D+
Sbjct: 2 APGREEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDS------------ 49
Query: 128 GIIEERFVEDGAT---VKAGQQLFKIKPTVCTPNSKYRAEKKLRPGREL------NSGPP 178
+ R + T + + K P + N+ Y R N G
Sbjct: 50 --AKARNRKVTVTGFLARIVPSILKQYPYL---NAIYDET-----RRVYILKKYYNIG-- 97
Query: 179 ECKPSVAVATPKGLVVPVIRN------------------------LAIEDSDGGTFTISN 214
+AV TP GL V VI++ L +++ TFTI+N
Sbjct: 98 -----IAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITN 152
Query: 215 GGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAV 274
G G ++ TPIIN P+ AILG+H ER MY++L+ DHRLIDG A
Sbjct: 153 VGTIGGIMSTPIINYPEVAILGVHRILEREGR--------KYMYLSLSCDHRLIDGAVAT 204
Query: 275 LFLRKIKAAVEDPRIILAGL 294
F+ +K +EDP I+ +
Sbjct: 205 RFIVDLKKVIEDPNAIIYEI 224
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase;
2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB:
1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A
1dpc_A
Length = 243
Score = 185 bits (472), Expect = 4e-58
Identities = 68/270 (25%), Positives = 100/270 (37%), Gaps = 69/270 (25%)
Query: 63 LPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDM------RKES 116
+PP P + + + V M R+ Q A L + +T F D+ R
Sbjct: 1 IPPI-PPVDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQ 59
Query: 117 N----------TSMPVPAPCNGIIEERFVEDGATVKAGQQLFKIKPTVCTPNSKYRAEK- 165
T +P + +KA L K P NS
Sbjct: 60 KAVAEKAGVKLTVLP------------LL-----LKACAYLLKELPDF---NSSLAPSGQ 99
Query: 166 KLRPGRELNSGPPECKPSVAVATPKGLVVPVIRN------------------------LA 201
L + ++ G AV TP GL+VPVIRN L
Sbjct: 100 ALIRKKYVHIG-------FAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLG 152
Query: 202 IEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVAL 261
+ G FTIS+ G G TPI+N P+ AILG+ +PV + M+ ++L
Sbjct: 153 ADAMQGACFTISSLGHIGGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSL 212
Query: 262 TYDHRLIDGREAVLFLRKIKAAVEDPRIIL 291
+YD R+I+G A F +++ + D R IL
Sbjct: 213 SYDCRVINGAAAARFTKRLGDLLADIRAIL 242
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid
dehydrogenase complex...; cubic core, HOMO trimer,
oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus}
PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Length = 262
Score = 173 bits (442), Expect = 2e-53
Identities = 58/280 (20%), Positives = 98/280 (35%), Gaps = 70/280 (25%)
Query: 57 EAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDM---- 112
+ P +K ++ + + + + + A + +E+D+
Sbjct: 10 PKPKDRTIPIPISKPPVFIGKDRTEPVKGFHKAMVKTMSAALKI-PHFGYCDEVDLTELV 68
Query: 113 --RKESN----------TSMPVPAPCNGIIEERFVEDGATVKAGQQLFKIKPTVCTPNSK 160
R+E + MP F +KA P + N+
Sbjct: 69 KLREELKPIAFARGIKLSFMP------------FF-----LKAASLGLLQFPIL---NAS 108
Query: 161 YRAEKK-LRPGRELNSGPPECKPSVAVATPKGLVVPVIRN-------------------- 199
+ + N G +A+ T +GL+VP ++N
Sbjct: 109 VDENCQNITYKASHNIG-------IAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLG 161
Query: 200 ----LAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPV-AIKGQVVVK 254
L+ D GGTFT+SN G G P+I PP+ AI + P KG+V
Sbjct: 162 SAGQLSTNDLIGGTFTLSNIGSIGGTYAKPVILPPEVAIGALGTIKALPRFNEKGEVCKA 221
Query: 255 PMMYVALTYDHRLIDGREAVLFLRKIKAAVEDPRIILAGL 294
+M V+ + DHR+IDG F K+ +E+P +L L
Sbjct: 222 QIMNVSWSADHRIIDGATVSRFSNLWKSYLENPAFMLLDL 261
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central
beta-sheet surrounded by five alpha-helices; 8.80A {Homo
sapiens}
Length = 239
Score = 167 bits (424), Expect = 5e-51
Identities = 65/258 (25%), Positives = 105/258 (40%), Gaps = 55/258 (21%)
Query: 68 PTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDM------RKESNTSMP 121
P T + ++ +R+ IAQRL +++ +++M RKE N +
Sbjct: 2 PGMAPVPTGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILE 61
Query: 122 VPAPC--NGIIEERFVEDGATVKAGQQLFKIKPTVCTPNSKYRAEKKLRPGRELNSGPPE 179
+ N I +KA P NS + + +R ++
Sbjct: 62 GRSKISVNDFI----------IKASALACLKVPEA---NSSW-MDTVIRQNHVVDVS--- 104
Query: 180 CKPSVAVATPKGLVVPVIRN------------------------LAIEDSDGGTFTISNG 215
VAV+TP GL+ P++ N L + GGTFTISN
Sbjct: 105 ----VAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISNL 160
Query: 216 GVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQ--VVVKPMMYVALTYDHRLIDGREA 273
G+FG + IINPPQ+ IL + + ++ V + V MM V L+ DHR++DG
Sbjct: 161 GMFGIKNFSAIINPPQACILAIGASEDKLVPADNEKGFDVASMMSVTLSCDHRVVDGAVG 220
Query: 274 VLFLRKIKAAVEDPRIIL 291
+L + + +E P +L
Sbjct: 221 AQWLAEFRKYLEKPITML 238
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid;
HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB:
1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Length = 219
Score = 69.7 bits (170), Expect = 3e-14
Identities = 13/135 (9%), Positives = 32/135 (23%), Gaps = 36/135 (26%)
Query: 182 PSVAVATPKGLVVPVIRN-------------------------LAIEDSDGGTFTISNGG 216
P V + + + + F +S
Sbjct: 90 PCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANP 149
Query: 217 VFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKP---MMYVALTYDHRLIDGREA 273
+ + PV G+ + +M +A+ H + DG
Sbjct: 150 WVSFTSFDLNVANMDNFFA--------PVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFHV 201
Query: 274 VLFLRKIKAAVEDPR 288
L +++ ++ +
Sbjct: 202 GRMLNELQQYCDEWQ 216
>3cla_A Type III chloramphenicol acetyltransferase; transferase
(acyltransferase); HET: CLM; 1.75A {Escherichia coli}
SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A
1qca_A*
Length = 213
Score = 58.9 bits (142), Expect = 1e-10
Identities = 10/138 (7%), Positives = 27/138 (19%), Gaps = 37/138 (26%)
Query: 179 ECKPSVAVATPKGLVVPVIRNLAIED--------------------------SDGGTFTI 212
P V + + D + I
Sbjct: 82 SVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNI 141
Query: 213 SNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKP---MMYVALTYDHRLID 269
S + P+ + + ++ +++ H + D
Sbjct: 142 SALPWVNFDSFNLNVANFTDYFA--------PIITMAKYQQEGDRLLLPLSVQVHHAVCD 193
Query: 270 GREAVLFLRKIKAAVEDP 287
G F+ +++
Sbjct: 194 GFHVARFINRLQELCNSK 211
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI-
protein structure initiative, midwest center for
structural genomics; 2.30A {Bacteroides
thetaiotaomicron}
Length = 217
Score = 52.1 bits (124), Expect = 4e-08
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 198 RNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVV---K 254
N + D D G +S T P+ G+ ++ +
Sbjct: 135 ENEEVADGDYGLILLSATPDLYFTSITGTQEKRSG--------NNYPLLNAGKAIIREGR 186
Query: 255 PMMYVALTYDHRLIDGREAVLFLRKIKAAVE 285
+M +A+T H IDG LF +K++ ++
Sbjct: 187 LVMPIAMTIHHGFIDGHHLSLFYKKVEDFLK 217
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A
{Mycobacterium smegmatis}
Length = 1113
Score = 48.3 bits (116), Expect = 2e-06
Identities = 35/136 (25%), Positives = 53/136 (38%), Gaps = 35/136 (25%)
Query: 186 VATPKG---LVVPVIRN------------------------LAIEDSDGGTFTISNGGVF 218
+ G LVV I+ L ED G T +++N G
Sbjct: 88 LQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTNPGTL 147
Query: 219 GSLLGTPIINPPQSAILGMHGTFERPVAIKG-------QVVVKPMMYVALTYDHRLIDGR 271
G++ P + Q AI+G G E P +G + + ++ + TYDHR+I G
Sbjct: 148 GTVHSVPRLMQGQGAIIGA-GAMEYPAEFQGASEERIADLGIGKLITLTSTYDHRIIQGA 206
Query: 272 EAVLFLRKIKAAVEDP 287
E+ FLR I + D
Sbjct: 207 ESGDFLRTIHQLLLDD 222
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Length = 116
Score = 41.8 bits (99), Expect = 2e-05
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 127 NGIIEERFVEDGATVKAGQQLFKIKP 152
+G+I + + G VK GQ LF I+
Sbjct: 9 SGVIVNKLFKAGDKVKKGQTLFIIEQ 34
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 2e-05
Identities = 45/369 (12%), Positives = 90/369 (24%), Gaps = 149/369 (40%)
Query: 13 PADPTKEISGTRSEQRVKMNRNGRNLQKRSKYRQSQQPSQLNAIEAATVKLPPADPTKEI 72
P+ T+ EQR ++ + + K + R + A ++L P K +
Sbjct: 105 PSMMTRMYI----EQRDRLYNDNQVFAKYNVSR----LQPYLKLRQALLEL---RPAKNV 153
Query: 73 -------SG--------TRSEQRVKMN---------RMRQRIAQRLKEAQNVNAMLTTFN 108
SG S + + L+ Q L
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK----LLYQI 209
Query: 109 EIDMRKESNTSMPVPAPCNGIIEE--RF---------------VEDGATVKAGQQLFKIK 151
+ + S+ S + + I E R V++ A F +
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA----FNLS 265
Query: 152 PTVCTPNSKYRAEKKLRPGRELNSGPPECKPSVAVAT-PKG----LVVPVIRNLAIEDSD 206
CK + + T K L +++++
Sbjct: 266 ----------------------------CK--ILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 207 GGTFTISNG-GVFGSLLGTPI---------INPPQSAILG-----MHGTFER-------- 243
T + L NP + +I+ T++
Sbjct: 296 MT-LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 244 -PVAIKGQV-VVKPM----MYVALTYDHRLIDGREAVLFLR--KIKAAV----------E 285
I+ + V++P M+ L +F I +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRL------------SVFPPSAHIPTILLSLIWFDVIKS 402
Query: 286 DPRIILAGL 294
D +++ L
Sbjct: 403 DVMVVVNKL 411
Score = 31.7 bits (71), Expect = 0.33
Identities = 20/123 (16%), Positives = 44/123 (35%), Gaps = 36/123 (29%)
Query: 2 RAIEAATVKLPPADPTKEISGTRSEQRVKM----NRNGRNLQKRSKYRQSQQPSQLNAIE 57
+ ++ LP E+ T + +R+ + R+G ++ IE
Sbjct: 309 KYLDCRPQDLPR-----EVLTT-NPRRLSIIAESIRDGLATWDN--WKHVNCDKLTTIIE 360
Query: 58 AATVKLPPAD-----------------PTKEIS-----GTRSEQRVKMNRMRQR--IAQR 93
++ L PA+ PT +S +S+ V +N++ + + ++
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 94 LKE 96
KE
Sbjct: 421 PKE 423
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain,
beta barrel, transport prote; 2.71A {Escherichia coli}
Length = 277
Score = 41.8 bits (99), Expect = 1e-04
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 127 NGIIEERFVEDGATVKAGQQLFKIKP 152
+GII +R ++G+ ++AG L++I P
Sbjct: 30 SGIILKRNFKEGSDIEAGVSLYQIDP 55
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 2e-04
Identities = 59/342 (17%), Positives = 109/342 (31%), Gaps = 105/342 (30%)
Query: 4 IEAATVKLPPADPTKEISGTRSEQRVKMNRNGRNLQKRSKYRQSQQPSQL-NAIEAATVK 62
I A KL + T + ++++ +K R + KR ++S S L A+ +
Sbjct: 101 IHALAAKLLQENDTTLV---KTKELIKNYITARIMAKRPFDKKS--NSALFRAVGEGNAQ 155
Query: 63 L--------PPADPTKEISG--TRSEQRVK--MNRMRQRIAQRLKEAQNVNAMLT-TFNE 109
L D +E+ V + + +++ ++ + + T N
Sbjct: 156 LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215
Query: 110 ID-MRKESNT-------SMPVPAPCNGIIEERFVEDGATVKAGQQL--FKIKPTVCTPNS 159
++ + SNT S+P+ P G+I QL + +
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISCPLIGVI---------------QLAHYVV---TA---- 253
Query: 160 KYRAEKKLRPGRELNSGPPECKPSVAVAT--PKGLVVPVIRNLAIEDSDGGTFTISNGGV 217
+ L P E + + AT +GLV V +A DS F +
Sbjct: 254 -----------KLLGFTPGELRSYLKGATGHSQGLVTAVA--IAETDSWESFFVSVRKAI 300
Query: 218 ---F--G--SLLGTPIINPP----QSAILGMHGTFERP---VAIKG--QVVVKPMM---- 257
F G P + P + ++ G P ++I Q V+ +
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV---PSPMLSISNLTQEQVQDYVNKTN 357
Query: 258 ---------YVAL--TYDHRLIDG-----REAVLFLRKIKAA 283
++L + ++ G L LRK KA
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Score = 30.8 bits (69), Expect = 0.58
Identities = 45/250 (18%), Positives = 85/250 (34%), Gaps = 55/250 (22%)
Query: 74 GTRSEQRVKMNRMRQRIAQRLKEAQNVNA--MLT----TFNEIDMR-KESNTSMPVPAPC 126
G R + + I + E ML+ T ++ ++N+ +P
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP----- 361
Query: 127 NGIIEERFVEDGATVKAGQQLFKIKPTVCT--PNSKYRAEKKLR-----PGRELNSGP-P 178
+ VE ++ G + V + P S Y LR G + + P
Sbjct: 362 ----AGKQVE--ISLVNGAKNL-----VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
Query: 179 ECKPSVA-----VATP--KGLVVPVIRNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQ 231
E K + VA+P L+VP +L +D + + + P+ +
Sbjct: 411 ERKLKFSNRFLPVASPFHSHLLVPAS-DLINKDLVKNNVSFN-----AKDIQIPVYDTFD 464
Query: 232 SAIL-GMHGTFERPVAIKGQVVVKPMMYVALTYD---HRLID-GREAVLFLRKIKAAVED 286
+ L + G+ I ++ P+ + T H ++D G L + +D
Sbjct: 465 GSDLRVLSGSISE--RIVDCIIRLPVKWETTTQFKATH-ILDFGPGGASGLGVLTHRNKD 521
Query: 287 ---PRIILAG 293
R+I+AG
Sbjct: 522 GTGVRVIVAG 531
Score = 30.0 bits (67), Expect = 1.0
Identities = 29/153 (18%), Positives = 47/153 (30%), Gaps = 47/153 (30%)
Query: 2 RAIEAATVKLPPADPTKEIS---GTRSEQRV---------KMNRNGRNLQKRSKYRQSQQ 49
+ LP EIS G + V +N R + S QS+
Sbjct: 351 DYVNKTNSHLPAGKQV-EISLVNGAK--NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI 407
Query: 50 P-SQLNAIEAATVKLP---P------ADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQN 99
P S+ ++ + LP P + I+ + V N A+ ++
Sbjct: 408 PFSE-RKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN------AKDIQIP-- 458
Query: 100 VNAMLTTFNEIDMRKESN----------TSMPV 122
V TF+ D+R S +PV
Sbjct: 459 VYD---TFDGSDLRVLSGSISERIVDCIIRLPV 488
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel,
membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP:
f.46.1.1 PDB: 2v4d_A 1t5e_A
Length = 369
Score = 41.1 bits (97), Expect = 2e-04
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 127 NGIIEERFVEDGATVKAGQQLFKIKP 152
NGII +R ++G+ VKAGQQL++I P
Sbjct: 51 NGIILKRLFKEGSDVKAGQQLYQIDP 76
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal
transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A
3ow7_A 3h9i_A 3h94_A 3h9t_B
Length = 413
Score = 40.9 bits (96), Expect = 3e-04
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 76 RSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAPCNGIIEERFV 135
+ + I +RL+ A A + + ++ T + AP +G+I +
Sbjct: 167 LLRETGGTATQTEGILERLRLAGMPEADI---RRLIATQKIQTRFTLKAPIDGVITAFDL 223
Query: 136 EDGATVKAGQQLFKI 150
G + + KI
Sbjct: 224 RAGMNIAKDNVVAKI 238
Score = 28.2 bits (63), Expect = 3.6
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 122 VPAPCNGIIEERFV-EDGATVKAGQQLFKI 150
V A G I++ + G V+ G L +
Sbjct: 124 VQARAAGFIDKVYPLTVGDKVQKGTPLLDL 153
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase,
lipoyl domain, complex, glycolysis; NMR {Escherichia
coli} SCOP: b.84.1.1
Length = 80
Score = 36.5 bits (85), Expect = 8e-04
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 122 VPAPCNGIIEERFVEDGATVKAGQQLFKIK 151
VPA +GI++ ++G TV + Q L +++
Sbjct: 48 VPASADGILDAVLEDEGTTVTSRQILGRLR 77
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of
2-oxoglutarate dehydrogenase...; glycolysis,
acyltransferase, lipoyl; NMR {Azotobacter vinelandii}
SCOP: b.84.1.1 PDB: 1ghk_A
Length = 79
Score = 35.7 bits (83), Expect = 0.002
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 122 VPAPCNGIIEERFVEDGATVKAGQQLFKIKP 152
V A +G+I E +G TV +G+ L K+
Sbjct: 47 VLAEADGVIAEIVKNEGDTVLSGELLGKLTE 77
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE);
structural genomics, PSI-2, protein structure
initiative; 2.80A {Cupriavidus metallidurans}
Length = 359
Score = 37.8 bits (88), Expect = 0.003
Identities = 12/32 (37%), Positives = 13/32 (40%)
Query: 122 VPAPCNGIIEERFVEDGATVKAGQQLFKIKPT 153
V P G I + G VKAG LF I
Sbjct: 60 VLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSA 91
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic
protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A
2b8f_A 2b8g_A*
Length = 72
Score = 34.1 bits (79), Expect = 0.006
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 121 PVPAPCNGIIEERFVEDGATVKAGQQLFKIKPT 153
P+ A +GI++E ++G V G L ++ +
Sbjct: 38 PIVADRSGIVKEVKKKEGDFVNEGDVLLELSNS 70
Score = 25.6 bits (57), Expect = 6.2
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 122 VPAPCNGIIEERFVEDGATVKAGQQL 147
V G + + V+ G ++ GQ++
Sbjct: 2 VSIQMAGNLWKVHVKAGDQIEKGQEV 27
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic
protein, MEM protein; 3.50A {Aggregatibacter
actinomycetemcomitans} PDB: 4dk1_A
Length = 369
Score = 35.9 bits (83), Expect = 0.013
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 128 GIIEERFVEDGATVKAGQQLFKIKPT 153
G I + +V+ G VK G L +I T
Sbjct: 41 GKITKLYVKLGQQVKKGDLLAEIDST 66
Score = 29.8 bits (67), Expect = 1.1
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 124 APCNGIIEERFVEDGATVKAGQQ---LFKI 150
+P +G + V +G TV + Q + K+
Sbjct: 159 SPIDGTVISTPVSEGQTVNSNQTTPTIIKV 188
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma
acidophilum}
Length = 77
Score = 33.0 bits (76), Expect = 0.017
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 122 VPAPCNGIIEERFVEDGATVKAGQQLFKI 150
+P+P G I + +G V G L +I
Sbjct: 47 IPSPVRGKIVKILYREGQVVPVGSTLLQI 75
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
biotin, disease mutation, gluconeogenesis, ligase, lipid
synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
PDB: 3bg9_A
Length = 718
Score = 35.4 bits (82), Expect = 0.019
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 120 MPVPAPCNGIIEERFVEDGATVKAGQQLFKIK 151
V +P G + + V T++ + +I+
Sbjct: 687 TVVTSPMEGTVRKVHVTKDMTLEGDDLILEIE 718
Score = 30.0 bits (68), Expect = 1.1
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 113 RKESNTSMPVPAPCNGIIEERFVEDGATVKAGQQLFKI 150
+ + + AP G + + V GA V GQ L +
Sbjct: 643 KALKDVKGQIGAPMPGKVIDIKVVAGAKVAKGQPLCVL 680
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid
biosynthesis, hamme structure, selenomethionine, ligase,
transferase; HET: BTN; 1.80A {Escherichia coli} SCOP:
b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Length = 80
Score = 32.6 bits (75), Expect = 0.022
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 13/52 (25%)
Query: 100 VNAMLTTFNEIDMRKESNTSMPVPAPCNGIIEERFVEDGATVKAGQQLFKIK 151
V AM N+I A +G ++ VE G V+ + L I+
Sbjct: 42 VEAM-KMMNQI------------EADKSGTVKAILVESGQPVEFDEPLVVIE 80
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces
lactis}
Length = 1236
Score = 35.0 bits (81), Expect = 0.027
Identities = 15/116 (12%), Positives = 33/116 (28%), Gaps = 8/116 (6%)
Query: 66 ADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAP 125
+ I + Q + R+ Q D+ + + + + +
Sbjct: 1117 NENIDSIVAFQEAQGGEKADEFARLIQVANAEL---KKSGDDKPQDVEEYPDDAELLYSE 1173
Query: 126 CNGIIEERFVEDGATVKAGQQLF-----KIKPTVCTPNSKYRAEKKLRPGRELNSG 176
G + G V+AG + K + V S + + G + +G
Sbjct: 1174 YTGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGDMVEAG 1229
Score = 33.8 bits (78), Expect = 0.073
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 120 MPVPAPCNGIIEERFVEDGATVKAGQQLFKI 150
M V A +G + + ++G V+AG + I
Sbjct: 1205 MVVGATKSGKVYKILHKNGDMVEAGDLVAVI 1235
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl
acid bearing, human BCKD, experimental DATA, average
structure, transferase; NMR {Homo sapiens} SCOP:
b.84.1.1 PDB: 1k8o_A
Length = 93
Score = 32.3 bits (74), Expect = 0.041
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 122 VPAPCNGIIEERFVEDGATVKAGQQLFKI 150
+ + +G+I++ + G+ L I
Sbjct: 50 ITSRYDGVIKKLYYNLDDIAYVGKPLVDI 78
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly,
membrane fusion protein, drug efflux pump, periplasmic
protein; 2.99A {Escherichia coli}
Length = 341
Score = 33.9 bits (78), Expect = 0.047
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 128 GIIEERFVEDGATVKAGQQLFKIKPT 153
G ++ V G VK Q L I P
Sbjct: 40 GQLKTLSVAIGDKVKKDQLLGVIDPE 65
Score = 30.0 bits (68), Expect = 0.84
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 124 APCNGIIEERFVEDGATVKAGQQ---LFKI 150
AP G + + G TV A QQ + +
Sbjct: 158 APMAGEVTQITTLQGQTVIAAQQAPNILTL 187
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead,
biocytin, transferase; NMR {Propionibacterium
freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Length = 77
Score = 31.1 bits (71), Expect = 0.067
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 121 PVPAPCNGIIEERFVEDGATVKAGQQLFKI 150
+ AP +G +E+ V++ V+ GQ L KI
Sbjct: 47 EINAPTDGKVEKVLVKERDAVQGGQGLIKI 76
Score = 26.8 bits (60), Expect = 2.0
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 122 VPAPCNGIIEERFVEDGATVKAGQQL 147
+PAP G + + V++G TVKAGQ +
Sbjct: 11 IPAPLAGTVSKILVKEGDTVKAGQTV 36
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring
enzyme, biotin, actyl COA carboxylase, fatty acid
synthesis, structural genomics; NMR {Homo sapiens}
Length = 99
Score = 31.2 bits (71), Expect = 0.087
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 121 PVPAPCNGIIEERFVEDGATVKAGQQLFKIKP 152
+ +P +G +++ F +GA L + +
Sbjct: 53 TIKSPKDGTVKKVFYREGAQANRHTPLVEFEE 84
Score = 28.5 bits (64), Expect = 0.92
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 122 VPAPCNGIIEERFVEDGATVKAGQQL 147
AP G IE+ FV+ G VKAG L
Sbjct: 17 PLAPMTGTIEKVFVKAGDKVKAGDSL 42
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP,
structural genomics, NPPSFA; 1.55A {Pyrococcus
horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Length = 74
Score = 30.3 bits (69), Expect = 0.11
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 121 PVPAPCNGIIEERFVEDGATVKAGQQLFKI 150
+P+P +G+++ V++G V GQ L ++
Sbjct: 44 EIPSPRDGVVKRILVKEGEAVDTGQPLIEL 73
Score = 26.8 bits (60), Expect = 2.2
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 122 VPAPCNGIIEERFVEDGATVKAGQQL 147
V AP G + V G V+ GQ L
Sbjct: 8 VSAPMPGKVLRVLVRVGDRVRVGQGL 33
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
{Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
3hb9_A*
Length = 1150
Score = 32.7 bits (75), Expect = 0.14
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 120 MPVPAPCNGIIEERFVEDGATVKAGQQLFKIKPT 153
+ AP +G+I++ V +G T+ G L +I+
Sbjct: 1115 TTIQAPFDGVIKQVTVNNGDTIATGDLLIEIEKA 1148
Score = 31.9 bits (73), Expect = 0.26
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 122 VPAPCNGIIEERFVEDGATVKAGQQLFKI 150
+ A G + E V G TVKA Q L
Sbjct: 1080 IGAQMPGSVTEVKVSVGETVKANQPLLIT 1108
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate
dehydrogenase...; misfolded dimer, acyltransferase,
glycolysis; NMR {Escherichia coli}
Length = 85
Score = 29.6 bits (67), Expect = 0.23
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 119 SMPVPAPCNGIIEERFVEDGATVKAGQQLFKIKPTVCTPNSKYRAEK 165
SM VPAP G+++E V G VK G + + P + ++
Sbjct: 39 SMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEVEGAAPAAAPAKQE 85
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA,
biotinylation, alternative splicing, ATP-binding,
biotin, fatty acid biosynthesis, ligase; NMR {Homo
sapiens}
Length = 84
Score = 29.6 bits (67), Expect = 0.24
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 120 MPVPAPCNGIIEERFVEDGATVKAGQQLFKI 150
M + G ++ GA ++AG + ++
Sbjct: 43 MTLNVQERGRVKYI-KRPGAVLEAGCVVARL 72
Score = 27.3 bits (61), Expect = 1.9
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 122 VPAPCNGIIEERFVEDGATVKAGQQL 147
+ +P G + + VEDG V+AG
Sbjct: 8 LRSPSAGKLTQYTVEDGGHVEAGSSY 33
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.27
Identities = 8/25 (32%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 165 KKLRPGRELNSGPPECKPSVAV-AT 188
KKL+ +L + + P++A+ AT
Sbjct: 23 KKLQASLKLYA--DDSAPALAIKAT 45
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
{Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Length = 1165
Score = 31.9 bits (73), Expect = 0.30
Identities = 13/29 (44%), Positives = 14/29 (48%)
Query: 122 VPAPCNGIIEERFVEDGATVKAGQQLFKI 150
V AP G+I FV G V AG L I
Sbjct: 1098 VGAPMPGVISRVFVSSGQAVNAGDVLVSI 1126
Score = 28.8 bits (65), Expect = 2.5
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 120 MPVPAPCNGIIEERFVEDGATVKAGQQLFKIK 151
+ A +G I E V+ G + A L
Sbjct: 1133 TAIHAEKDGTIAEVLVKAGDQIDAKDLLAVYG 1164
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase,
biotin, ATP-binding, disease mutation,
nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo
sapiens}
Length = 94
Score = 29.7 bits (67), Expect = 0.30
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 112 MRKESNTSMPVPAPCNGIIEERFVEDGATVKAGQQL 147
+ +S TS + +P G++ V+ G V GQ++
Sbjct: 18 LYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEI 53
Score = 28.1 bits (63), Expect = 1.2
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 121 PVPAPCNGIIEERFVEDGATVKAGQQLFKIK 151
+ A G ++ + G TV G L +++
Sbjct: 64 SMTAGKTGTVKSVHCQAGDTVGEGDLLVELE 94
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin
carboxylase, carboxyltransferase, BT domain, BCCP DOM
ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Length = 675
Score = 31.5 bits (72), Expect = 0.32
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 124 APCNGIIEERFVEDGATVKAGQQLFKIKPT 153
AP G+++ + +G V+ G L ++
Sbjct: 644 APHAGVVKALYCSEGELVEEGTPLVELDEN 673
Score = 30.7 bits (70), Expect = 0.59
Identities = 13/24 (54%), Positives = 14/24 (58%)
Query: 124 APCNGIIEERFVEDGATVKAGQQL 147
AP NG I VE G TV+AG L
Sbjct: 607 APMNGSIVRVLVEPGQTVEAGATL 630
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate
dehydrogenase complex; glycolysis, acyltransferase,
lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB:
1iyv_A
Length = 79
Score = 28.3 bits (64), Expect = 0.65
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 119 SMPVPAPCNGIIEERFVEDGATVKAGQQLFKIKPT 153
SM VP+P G+++ V+ G +K G + +++P
Sbjct: 41 SMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEPA 75
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 29.0 bits (65), Expect = 0.66
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 120 MPVPAPCNGIIEERFVEDGATVKAGQQLFKI 150
M + G ++ GA ++AG + ++
Sbjct: 55 MTLNVQERGRVKYI-KRPGAVLEAGCVVARL 84
Score = 29.0 bits (65), Expect = 0.70
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 110 IDMRKESNTSMPVPAPCNGIIEERFVEDGATVKAGQQL 147
KE++ + + +P G + + VEDG V+AG
Sbjct: 9 CVFEKENDPT-VLRSPSAGKLTQYTVEDGGHVEAGSSY 45
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate
dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Length = 80
Score = 28.4 bits (64), Expect = 0.71
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 119 SMPVPAPCNGIIEERFVEDGATVKAGQQLFKIK 151
SM VPAP G+++E V G VK G + +
Sbjct: 43 SMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFE 75
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain,
dihydrolipoyl dehydrogenase, multienzyme complex,
post-translational modification; NMR {Neisseria
meningitidis} SCOP: b.84.1.1
Length = 81
Score = 28.0 bits (63), Expect = 0.86
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 119 SMPVPAPCNGIIEERFVEDGATVKAGQQLFKI 150
+M VPA G+++E V+ G + G + +
Sbjct: 44 TMDVPAEVAGVVKEVKVKVGDKISEGGLIVVV 75
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex,
biotin-dependent carboxylase, ligase; HET: BTI; 3.20A
{Ruegeria pomeroyi}
Length = 681
Score = 30.0 bits (68), Expect = 1.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 124 APCNGIIEERFVEDGATVKAGQQL 147
P G+I + VE G V+ GQ L
Sbjct: 617 CPMPGLIVKVDVEVGQEVQEGQAL 640
Score = 28.8 bits (65), Expect = 2.3
Identities = 3/28 (10%), Positives = 11/28 (39%)
Query: 124 APCNGIIEERFVEDGATVKAGQQLFKIK 151
A G++ + G ++ + + +
Sbjct: 654 AEKKGVVAKINASAGNSLAVDDVIMEFE 681
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.6 bits (63), Expect = 2.0
Identities = 14/90 (15%), Positives = 33/90 (36%), Gaps = 18/90 (20%)
Query: 49 QPSQLNAIEAATVKLPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFN 108
Q +L E +++ + K + + +V R++ A++ E N +
Sbjct: 76 QADRLTQ-EPESIRKWREEQRKRLQELDAASKVMEQEWREK-AKKDLEEWNQR-----QS 128
Query: 109 E-IDMRKESNTSMPVPAPCNGIIEERFVED 137
E ++ K + N I ++ F +
Sbjct: 129 EQVEKNKIN----------NRIADKAFYQQ 148
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase,
transferase; 2.62A {Francisella tularensis subsp}
Length = 287
Score = 27.8 bits (63), Expect = 4.0
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 132 ERFVEDGATVKAGQQLFKIK 151
D V A ++F++K
Sbjct: 78 TWLYSDAQKVPANARIFELK 97
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 27.8 bits (62), Expect = 4.3
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 179 ECKPSVAVATPKGLVVPVIRNLAIEDSDGGTFTISN 214
+ P++ +P+ +V N + GT +
Sbjct: 412 DPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRY 447
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures,
ssgcid, niaid, SBRI, UWPPG, glycosyltransferase,
transferase, structural genomics; 2.25A {Burkholderia
pseudomallei}
Length = 298
Score = 27.5 bits (62), Expect = 4.9
Identities = 2/20 (10%), Positives = 9/20 (45%)
Query: 132 ERFVEDGATVKAGQQLFKIK 151
+ +G + A + +++
Sbjct: 89 DWRHREGDRMSADSTVCELR 108
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD
biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium}
SCOP: c.1.17.1 d.41.2.1
Length = 296
Score = 27.5 bits (62), Expect = 5.5
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 132 ERFVEDGATVKAGQQLFKIK 151
V+DG + A Q +F+++
Sbjct: 88 TWHVDDGDAIHANQTVFELQ 107
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel,
pyridin dicarboxylate, 5-phospho-alpha-D-ribose
1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Length = 320
Score = 27.6 bits (62), Expect = 5.6
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 132 ERFVEDGATVKAGQQLFKIK 151
E V+DG T+ Q L +
Sbjct: 111 EWHVQDGDTLTPNQTLCTLT 130
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural
genomics, NPPSFA, national project O structural and
functional analyses; 1.90A {Thermus thermophilus}
Length = 286
Score = 27.5 bits (62), Expect = 5.7
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 132 ERFVEDGATVKAGQQLFKIK 151
V +GA V G ++ +++
Sbjct: 75 TPLVAEGARVAEGTEVARVR 94
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de
novo NAD biosynthesis, PRPP, phosphoribos transferase;
2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1
d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Length = 284
Score = 27.1 bits (61), Expect = 6.1
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 125 PCNGIIEERFVEDGATVKAGQQLFKIK 151
NG VEDGA V G+ L ++
Sbjct: 67 GTNGYRVLDRVEDGARVPPGEALMTLE 93
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate
phosphoribosyltransferase, quinolinic acid, HELI pylori,
transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB:
2b7p_A* 2b7q_A*
Length = 273
Score = 27.0 bits (61), Expect = 6.3
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 132 ERFVEDGATVKAGQQLFKIK 151
+ ++D K L +I+
Sbjct: 61 VQTIKDKERFKPKDALMEIR 80
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI,
UW, emerald biostructures, ALS collaborative
crystallography; 2.05A {Ehrlichia chaffeensis}
Length = 300
Score = 27.1 bits (61), Expect = 6.9
Identities = 4/20 (20%), Positives = 6/20 (30%)
Query: 132 ERFVEDGATVKAGQQLFKIK 151
E +DG L +
Sbjct: 87 EIHKKDGDITGKNSTLVSGE 106
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural
genomics, joint center for structural genomics, J
protein structure initiative; 2.50A {Thermotoga
maritima} SCOP: c.1.17.1 d.41.2.1
Length = 285
Score = 27.1 bits (61), Expect = 7.0
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 132 ERFVEDGATVKAGQQLFKIK 151
+ VEDG ++ + +I+
Sbjct: 74 KFNVEDGEYLEGTGVIGEIE 93
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase,
signal transduction, sugar transport; 1.98A {Escherichia
coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F*
1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Length = 161
Score = 26.4 bits (59), Expect = 7.4
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 132 ERFVEDGATVKAGQQLFKI 150
+R E+G VK G + +
Sbjct: 97 KRIAEEGQRVKVGDTVIEF 115
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics,
center for structural genomics of infec diseases, csgid;
HET: FAD; 2.69A {Listeria monocytogenes}
Length = 322
Score = 27.1 bits (61), Expect = 7.6
Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 19/74 (25%)
Query: 31 MNRNGRNLQKRSK------YRQSQQPSQLNAIEAATVKLPPADPTKEISGTRSEQRVKMN 84
+ + G L+K + YR S + + AT L + I
Sbjct: 175 LTQTG-ELKKLKRSELKAAYRFSTIAEKNYIVLDATFSLALEEK-NLI----------QA 222
Query: 85 RMRQRIAQRLKEAQ 98
+M + A R + Q
Sbjct: 223 KMDELTAAR-EAKQ 235
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system,
sugar transport, transferase, phosphorylation,
transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1
PDB: 1gpr_A
Length = 162
Score = 26.5 bits (59), Expect = 8.4
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 132 ERFVEDGATVKAGQQLFKI 150
FV +G V+ GQ+L ++
Sbjct: 97 TSFVSEGDRVEPGQKLLEV 115
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA;
2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Length = 154
Score = 26.4 bits (59), Expect = 8.7
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 132 ERFVEDGATVKAGQQLFKI 150
E FV V AG +L +
Sbjct: 92 ESFVTQDQEVNAGDKLVTV 110
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit;
HET: MES; 2.60A {Homo sapiens}
Length = 326
Score = 26.8 bits (60), Expect = 8.8
Identities = 5/41 (12%), Positives = 14/41 (34%)
Query: 75 TRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMRKE 115
+R V M + ++ A++ + + F +
Sbjct: 285 SRKASAVNMEKFKKFAARKKSNNGSGGGLNDIFEAQKIEWH 325
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid
motif, transferase; 2.30A {Escherichia coli}
Length = 190
Score = 26.6 bits (59), Expect = 9.6
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 134 FVEDGATVKAGQQLFKIKP 152
DG V G+ + P
Sbjct: 65 AKGDGEQVAGGETVANWDP 83
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 27.0 bits (60), Expect = 9.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 134 FVEDGATVKAGQQLFK 149
V+DG V+AGQ L +
Sbjct: 1312 LVKDGDYVEAGQPLTR 1327
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase
activity1, lyase-transferase complex; 2.20A {Vibrio
vulnificus}
Length = 183
Score = 26.1 bits (58), Expect = 10.0
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 132 ERFVEDGATVKAGQQLFKI 150
R E+G TVKAG + +
Sbjct: 119 TRIAEEGQTVKAGDTVIEF 137
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.373
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,542,225
Number of extensions: 281078
Number of successful extensions: 664
Number of sequences better than 10.0: 1
Number of HSP's gapped: 647
Number of HSP's successfully gapped: 111
Length of query: 294
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 201
Effective length of database: 4,105,140
Effective search space: 825133140
Effective search space used: 825133140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.9 bits)