RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7777
(294 letters)
>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase
{Escherichia coli [TaxId: 562]}
Length = 233
Score = 158 bits (400), Expect = 5e-48
Identities = 104/243 (42%), Positives = 136/243 (55%), Gaps = 35/243 (14%)
Query: 76 RSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAPCNGIIEERFV 135
RSE+RV M R+R+R+A+RL EA+N AMLTTFNE++M+ + R
Sbjct: 2 RSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLG 61
Query: 136 EDGATVKAGQQLFKIKPTVCTPNSKYRAEKKLRPGRELNSGPPECKPSVAVATPKGLVVP 195
VKA + K P V + + + S+AV+TP+GLV P
Sbjct: 62 FMSFYVKAVVEALKRYPEVN---ASIDGDDVVYH--------NYFDVSMAVSTPRGLVTP 110
Query: 196 VIRN------------------------LAIEDSDGGTFTISNGGVFGSLLGTPIINPPQ 231
V+R+ L +ED GG FTI+NGGVFGSL+ TPIINPPQ
Sbjct: 111 VLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQ 170
Query: 232 SAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKIKAAVEDPRIIL 291
SAILGMH +RP+A+ GQV + PMMY+AL+YDHRLIDGRE+V FL IK +EDP +L
Sbjct: 171 SAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLL 230
Query: 292 AGL 294
+
Sbjct: 231 LDV 233
>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 242
Score = 141 bits (355), Expect = 3e-41
Identities = 61/243 (25%), Positives = 101/243 (41%), Gaps = 34/243 (13%)
Query: 73 SGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAPCNGIIEE 132
G E R KM+ +R+ IA+ + +++ +T +E D+ +
Sbjct: 9 EGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADV-TKLVAHRKKFKAIAAEKGI 67
Query: 133 RFVEDGATVKAGQQLFKIKPTVCTPNSKYRAEKKLRPGRELNSGPPECKPSVAVATPKGL 192
+ VKA + P + T + E +A T +GL
Sbjct: 68 KLTFLPYVVKALVSALREYPVLNT---------SIDDETEEIIQKHYYNIGIAADTDRGL 118
Query: 193 VVPVIRN------------------------LAIEDSDGGTFTISNGGVFGSLLGTPIIN 228
+VPVI++ L + G + TI+N G G TP+IN
Sbjct: 119 LVPVIKHADRKPIFALAQEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVIN 178
Query: 229 PPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKIKAAVEDPR 288
P+ AILG+ E+P+ G++V PM+ ++L++DHR+IDG A L IK + DP
Sbjct: 179 HPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDHRMIDGATAQKALNHIKRLLSDPE 238
Query: 289 IIL 291
++L
Sbjct: 239 LLL 241
>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase
{Azotobacter vinelandii [TaxId: 354]}
Length = 243
Score = 138 bits (347), Expect = 5e-40
Identities = 60/253 (23%), Positives = 94/253 (37%), Gaps = 35/253 (13%)
Query: 63 LPPADPTKEISGTRSEQRVKMNRMRQRIAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPV 122
+PP P + + + V M R+ Q A L + +T F D+ + +
Sbjct: 1 IPPI-PPVDFAKYGEIEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQ 59
Query: 123 PAPCNGIIEERFVEDGATVKAGQQLFKIKPTVCTPNSKYRAEKKLRPGRELNSGPPECKP 182
A + V L ++ + +A +
Sbjct: 60 KAVAEKAGVKLTVLPLLLKACAYLLKELPDFNSSLAPSGQALIR----------KKYVHI 109
Query: 183 SVAVATPKGLVVPVIRN------------------------LAIEDSDGGTFTISNGGVF 218
AV TP GL+VPVIRN L + G FTIS+ G
Sbjct: 110 GFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISSLGHI 169
Query: 219 GSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLR 278
G TPI+N P+ AILG+ +PV + M+ ++L+YD R+I+G A F +
Sbjct: 170 GGTAFTPIVNAPEVAILGVSKASMQPVWDGKAFQPRLMLPLSLSYDCRVINGAAAARFTK 229
Query: 279 KIKAAVEDPRIIL 291
++ + D R IL
Sbjct: 230 RLGDLLADIRAIL 242
>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT
{Escherichia coli [TaxId: 562]}
Length = 213
Score = 104 bits (260), Expect = 1e-27
Identities = 7/139 (5%), Positives = 26/139 (18%), Gaps = 33/139 (23%)
Query: 177 PPECKPSVAVATPKGLVVPVIRN------------------------LAIEDSDGGTFTI 212
P V + + +
Sbjct: 80 WDSVDPQFTVFHQETETFSALSCPYSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHL 139
Query: 213 SNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVV---KPMMYVALTYDHRLID 269
+ + + P+ + + ++ +++ H + D
Sbjct: 140 NISA-LPWVNFDSFNLNVANFTDYF-----APIITMAKYQQEGDRLLLPLSVQVHHAVCD 193
Query: 270 GREAVLFLRKIKAAVEDPR 288
G F+ +++
Sbjct: 194 GFHVARFINRLQELCNSKL 212
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT
{Escherichia coli [TaxId: 562]}
Length = 214
Score = 101 bits (254), Expect = 1e-26
Identities = 14/138 (10%), Positives = 32/138 (23%), Gaps = 36/138 (26%)
Query: 179 ECKPSVAVATPKGLVVPVIRN-------------------------LAIEDSDGGTFTIS 213
P V + + + + F +S
Sbjct: 83 SVHPCYTVFHEQTETFSSLWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVS 142
Query: 214 NGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVV---KPMMYVALTYDHRLIDG 270
+ + PV G+ K +M +A+ H + DG
Sbjct: 143 ANPWVSFTSFDLNVANMDNFFA--------PVFTMGKYYTQGDKVLMPLAIQVHHAVCDG 194
Query: 271 REAVLFLRKIKAAVEDPR 288
L +++ ++ +
Sbjct: 195 FHVGRMLNELQQYCDEWQ 212
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Bacillus stearothermophilus [TaxId:
1422]}
Length = 80
Score = 39.0 bits (91), Expect = 4e-05
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 95 KEAQNVNAMLTTFNEIDMRKESNTSMPVPAPCNGIIEERFVEDGATVKAGQQLFKI 150
K VN E+ + +P+P G + E V +G GQ L +
Sbjct: 24 KPGDEVNEDDVLC-EVQN---DKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITL 75
>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase
{Escherichia coli [TaxId: 562]}
Length = 80
Score = 37.6 bits (87), Expect = 2e-04
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 117 NTSMPVPAPCNGIIEERFVEDGATVKAGQQLFKIK 151
+ A +G ++ VE G V+ + L I+
Sbjct: 46 KMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE 80
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial
branched-chain alpha-ketoacid dehydrogenase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 87
Score = 35.9 bits (83), Expect = 6e-04
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 116 SNTSMPVPAPCNGIIEERFVEDGATVKAGQQLFKI 150
S+ + + +G+I++ + G+ L I
Sbjct: 44 DKASVTITSRYDGVIKKLYYNLDDIAYVGKPLVDI 78
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of
transcarboxylase (TC 1.3S) {Propionibacterium
freudenreichii, subsp. shermanii [TaxId: 1744]}
Length = 77
Score = 35.6 bits (82), Expect = 6e-04
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 116 SNTSMPVPAPCNGIIEERFVEDGATVKAGQQLFKI 150
+ AP +G +E+ V++ V+ GQ L KI
Sbjct: 42 MKMETEINAPTDGKVEKVLVKERDAVQGGQGLIKI 76
Score = 25.6 bits (56), Expect = 2.0
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 122 VPAPCNGIIEERFVEDGATVKAGQQLFKI 150
+PAP G + + V++G TVKAGQ + +
Sbjct: 11 IPAPLAGTVSKILVKEGDTVKAGQTVLVL 39
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 237
Score = 38.2 bits (87), Expect = 6e-04
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 104 LTTFNEIDMRKESNTSMPVPAPCNGIIEERFVEDGATVKAGQQLFKIKPT 153
L T E+ R + V NGII +R ++G+ VKAGQQL++I P
Sbjct: 2 LNT--ELPGRTNAFRIAEVRPQVNGIILKRLFKEGSDVKAGQQLYQIDPA 49
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate
dehydrogenase complex {Escherichia coli [TaxId: 562]}
Length = 80
Score = 34.4 bits (79), Expect = 0.002
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 117 NTSMPVPAPCNGIIEERFVEDGATVKAGQQLFKIK 151
+ VPA +GI++ ++G TV + Q L +++
Sbjct: 43 KVVLEVPASADGILDAVLEDEGTTVTSRQILGRLR 77
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate
dehydrogenase complex {Azotobacter vinelandii [TaxId:
354]}
Length = 79
Score = 32.9 bits (75), Expect = 0.006
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 117 NTSMPVPAPCNGIIEERFVEDGATVKAGQQLFKI 150
M V A +G+I E +G TV +G+ L K+
Sbjct: 42 KVVMEVLAEADGVIAEIVKNEGDTVLSGELLGKL 75
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Azotobacter vinelandii [TaxId: 354]}
Length = 79
Score = 30.6 bits (69), Expect = 0.037
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 118 TSMPVPAPCNGIIEERFVEDGATVKAGQQLFKIKP 152
SM VP+P G+++ V+ G +K G + +++P
Sbjct: 40 ASMEVPSPKAGVVKSVSVKLGDKLKEGDAIIELEP 74
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Escherichia coli [TaxId: 562]}
Length = 80
Score = 29.8 bits (67), Expect = 0.078
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 117 NTSMPVPAPCNGIIEERFVEDGATVKAGQQLFKIKP 152
SM VPAP G+++E V G VK G + +
Sbjct: 41 KASMEVPAPFAGVVKELKVNVGDKVKTGSLIMIFEV 76
>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide
acetyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 28.7 bits (64), Expect = 0.27
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 90 IAQRLKEAQNVNAMLTTFNEIDMRKESNTSMPVPAPCNGIIEERFVEDGA-TVKAGQQLF 148
+ + K+ + EI+ K ++ G + + V +G V G L
Sbjct: 22 VQRWEKKVGEKLSEGDLLAEIETDK---ATIGFEVQEEGYLAKILVPEGTRDVPLGTPLC 78
Query: 149 KI 150
I
Sbjct: 79 II 80
>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC
{Amphibacillus xylanus [TaxId: 1449]}
Length = 166
Score = 27.6 bits (60), Expect = 1.2
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 242 ERPVAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKIKAA 283
E +A +G ++ P + + GR+A + K+KAA
Sbjct: 114 ETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKVKAA 155
>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc
{Bacillus subtilis [TaxId: 1423]}
Length = 158
Score = 27.1 bits (60), Expect = 1.7
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 127 NGIIEERFVEDGATVKAGQQLFKI 150
G FV +G V+ GQ+L ++
Sbjct: 89 KGEGFTSFVSEGDRVEPGQKLLEV 112
>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin
peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}
Length = 194
Score = 27.4 bits (60), Expect = 1.8
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 245 VAIKGQVVVKPMMYVALTYDHRLIDGREAVLFLRKIKAA 283
VA +G ++ P + + L GR+ LR +KA
Sbjct: 122 VAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRLVKAF 160
>d2bjqa2 b.169.1.1 (A:5-174) Sperm motility protein MFP2 {Pig
roundworm (Ascaris suum), isoform A [TaxId: 6253]}
Length = 170
Score = 27.1 bits (60), Expect = 2.1
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 242 ERPVAIKGQVVVKPMMYVALTYDH-RLIDGR 271
+ PV +KGQ MYVAL Y + I GR
Sbjct: 17 DNPVRVKGQ----QNMYVALWYKFGKPIHGR 43
>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII)
{Escherichia coli [TaxId: 562]}
Length = 150
Score = 26.6 bits (59), Expect = 2.8
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 127 NGIIEERFVEDGATVKAGQQLFKI 150
G +R E+G VK G + +
Sbjct: 81 KGEGFKRIAEEGQRVKVGDTVIEF 104
>d2bjra1 b.169.1.1 (A:6-184) Sperm motility protein MFP2 {Pig
roundworm (Ascaris suum), isoform B [TaxId: 6253]}
Length = 179
Score = 26.3 bits (58), Expect = 3.1
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 4/24 (16%)
Query: 242 ERPVAIKGQVVVKPMMYVALTYDH 265
+ PV GQ MYVAL Y +
Sbjct: 17 DNPVKALGQ----QNMYVALWYKN 36
>d1tzaa_ b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId: 70863]}
Length = 132
Score = 25.9 bits (57), Expect = 3.4
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 14/56 (25%)
Query: 198 RNLAIEDSDGGTFTISNGGVFGSLLGTPIINPPQS------AILG-----MHGTFE 242
R+ I D++G T + GV G TP I P + +L M+GT+
Sbjct: 47 RHWIITDANGKTSEVQGAGVVG---ETPTIPPNTAYQYTSGTVLDTPFGIMYGTYG 99
>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase
{Escherichia coli [TaxId: 562]}
Length = 144
Score = 26.0 bits (57), Expect = 4.3
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 201 AIEDSDGGTFTISNGGVFGSLLGTPIINPPQSAILGMHGTFERPVAIKGQVVV 253
A+E DG F+ G + P + P Q A++ ++ I+ V+
Sbjct: 64 ALECKDGRIFS---GSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLA 113
>d2gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc
{Mycoplasma capricolum [TaxId: 2095]}
Length = 154
Score = 25.1 bits (55), Expect = 6.9
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 127 NGIIEERFVEDGATVKAGQQLFKI 150
+G E FV V AG +L +
Sbjct: 87 DGNGFESFVTQDQEVNAGDKLVTV 110
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide
acetyltransferase {Neisseria meningitidis [TaxId: 487]}
Length = 81
Score = 24.0 bits (52), Expect = 8.1
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 127 NGIIEERFVEDGATVKAGQQLFKIKPTVCT 156
N I V G T+ L ++ T
Sbjct: 15 NVDIIAVEVNVGDTIAVDDTLITLETDKAT 44
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.373
Gapped
Lambda K H
0.267 0.0601 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,082,950
Number of extensions: 51480
Number of successful extensions: 144
Number of sequences better than 10.0: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 30
Length of query: 294
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 209
Effective length of database: 1,240,546
Effective search space: 259274114
Effective search space used: 259274114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.1 bits)