BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7778
(117 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|383863773|ref|XP_003707354.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Megachile rotundata]
Length = 310
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/78 (76%), Positives = 67/78 (85%)
Query: 6 FLIGGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNK 65
F GG+LLY++KDP + K +DNEEK+VY IIEEAGNKGIW+RDIRFKSNLMPTQLNK
Sbjct: 71 FKQGGSLLYRLKDPSKAKVAKGADNEEKIVYTIIEEAGNKGIWIRDIRFKSNLMPTQLNK 130
Query: 66 ILKQLETKKIIKAVKSVA 83
ILK LETKK IKAVKSVA
Sbjct: 131 ILKSLETKKFIKAVKSVA 148
>gi|380025937|ref|XP_003696719.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC6-like [Apis florea]
Length = 311
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/78 (76%), Positives = 67/78 (85%)
Query: 6 FLIGGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNK 65
F GG+LLY++KDP + K +DNEEK+VY IIEEAGNKGIW+RDIRFKSNLMPTQLNK
Sbjct: 72 FKQGGSLLYRLKDPSKAKIAKGADNEEKIVYTIIEEAGNKGIWIRDIRFKSNLMPTQLNK 131
Query: 66 ILKQLETKKIIKAVKSVA 83
ILK LETKK IKAVKSVA
Sbjct: 132 ILKSLETKKFIKAVKSVA 149
>gi|66509068|ref|XP_624984.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Apis
mellifera]
Length = 311
Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/78 (76%), Positives = 67/78 (85%)
Query: 6 FLIGGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNK 65
F GG+LLY++KDP + K +DNEEK+VY IIEEAGNKGIW+RDIRFKSNLMPTQLNK
Sbjct: 72 FKQGGSLLYRLKDPSKAKIAKGADNEEKIVYTIIEEAGNKGIWIRDIRFKSNLMPTQLNK 131
Query: 66 ILKQLETKKIIKAVKSVA 83
ILK LETKK IKAVKSVA
Sbjct: 132 ILKSLETKKFIKAVKSVA 149
>gi|156551159|ref|XP_001604309.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Nasonia vitripennis]
Length = 305
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/78 (76%), Positives = 64/78 (82%)
Query: 6 FLIGGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNK 65
F G LLYK+KDP K +DNEE++VY IIEEAGNKGIW RDIRFKSNLMPTQLNK
Sbjct: 65 FKQGETLLYKLKDPTKARTAKGADNEERIVYTIIEEAGNKGIWTRDIRFKSNLMPTQLNK 124
Query: 66 ILKQLETKKIIKAVKSVA 83
ILK LETKKIIKAVKSVA
Sbjct: 125 ILKSLETKKIIKAVKSVA 142
>gi|350410921|ref|XP_003489178.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Bombus impatiens]
Length = 311
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/78 (75%), Positives = 66/78 (84%)
Query: 6 FLIGGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNK 65
F GG+LLY++KDP + K +DNEEK+VY IIEEAGNKGIW+RDIRFKSNLMPTQLNK
Sbjct: 72 FKQGGSLLYRLKDPSKAKIAKGADNEEKIVYTIIEEAGNKGIWIRDIRFKSNLMPTQLNK 131
Query: 66 ILKQLETKKIIKAVKSVA 83
ILK LE KK IKAVKSVA
Sbjct: 132 ILKSLEIKKFIKAVKSVA 149
>gi|340714612|ref|XP_003395820.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Bombus terrestris]
Length = 311
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/78 (75%), Positives = 66/78 (84%)
Query: 6 FLIGGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNK 65
F GG+LLY++KDP + K +DNEEK+VY IIEEAGNKGIW+RDIRFKSNLMPTQLNK
Sbjct: 72 FKQGGSLLYRLKDPSKAKIAKGADNEEKIVYTIIEEAGNKGIWIRDIRFKSNLMPTQLNK 131
Query: 66 ILKQLETKKIIKAVKSVA 83
ILK LE KK IKAVKSVA
Sbjct: 132 ILKSLEIKKFIKAVKSVA 149
>gi|307207698|gb|EFN85335.1| DNA-directed RNA polymerase III subunit RPC6 [Harpegnathos
saltator]
Length = 331
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/75 (73%), Positives = 63/75 (84%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
G +L Y++KD + +K +DNEEK+VY IIEEAGNKGIW+RDIRFKSNL PTQLNKILK
Sbjct: 89 GESLFYRLKDLSKTKAVKGADNEEKIVYTIIEEAGNKGIWIRDIRFKSNLAPTQLNKILK 148
Query: 69 QLETKKIIKAVKSVA 83
LETKK IKAVKSVA
Sbjct: 149 SLETKKCIKAVKSVA 163
>gi|332372876|gb|AEE61580.1| unknown [Dendroctonus ponderosae]
Length = 305
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/74 (77%), Positives = 60/74 (81%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ 69
G L YK KDP K SDNEEKVVYKIIEEAGNKGIW+RDIRFKSN+ TQLNK+LK
Sbjct: 68 GELFYKFKDPTKKSANKGSDNEEKVVYKIIEEAGNKGIWIRDIRFKSNINNTQLNKVLKS 127
Query: 70 LETKKIIKAVKSVA 83
LE KKIIKAVKSVA
Sbjct: 128 LEAKKIIKAVKSVA 141
>gi|242022647|ref|XP_002431750.1| DNA-directed RNA polymerase III subunit F, putative [Pediculus
humanus corporis]
gi|212517075|gb|EEB19012.1| DNA-directed RNA polymerase III subunit F, putative [Pediculus
humanus corporis]
Length = 315
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/78 (67%), Positives = 64/78 (82%)
Query: 6 FLIGGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNK 65
F GG L+YK KD + +K +DNEEKVVY I+E AGNKGIW+RDIR++SNL+PTQLNK
Sbjct: 75 FNQGGKLIYKFKDVAKGDSVKGADNEEKVVYSIVEAAGNKGIWIRDIRYQSNLLPTQLNK 134
Query: 66 ILKQLETKKIIKAVKSVA 83
ILK LE KK+IKAVKSV+
Sbjct: 135 ILKALENKKLIKAVKSVS 152
>gi|291222494|ref|XP_002731250.1| PREDICTED: Polr3f protein-like [Saccoglossus kowalevskii]
Length = 309
Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 66/74 (89%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ 69
L+YK+KDP T+ K+K SDN+EK++Y+IIEEAGNKGIW+RDIR+KSNL+ TQ++KIL+
Sbjct: 69 AGLVYKLKDPQTSSKMKGSDNQEKLIYQIIEEAGNKGIWIRDIRYKSNLLMTQVSKILRN 128
Query: 70 LETKKIIKAVKSVA 83
LE+KK+IKA+KSV
Sbjct: 129 LESKKLIKAIKSVG 142
>gi|405973850|gb|EKC38540.1| DNA-directed RNA polymerase III subunit RPC6 [Crassostrea gigas]
Length = 312
Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 65/75 (86%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
G LLY++KDP + ++K DN+EK+VY+II++AGNKGIW+RDIRFK NL+ TQ+NKILK
Sbjct: 67 GSKLLYRLKDPDSARQVKGGDNQEKLVYQIIKDAGNKGIWIRDIRFKCNLLLTQVNKILK 126
Query: 69 QLETKKIIKAVKSVA 83
LETKK+IKAVKSVA
Sbjct: 127 NLETKKLIKAVKSVA 141
>gi|91094199|ref|XP_971496.1| PREDICTED: similar to AGAP011973-PA [Tribolium castaneum]
gi|270011207|gb|EFA07655.1| hypothetical protein TcasGA2_TC030601 [Tribolium castaneum]
Length = 301
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/72 (75%), Positives = 61/72 (84%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLYK KD ++ +DNEEKVV+KIIEEAGNKGIW+RDIRFKSNL TQLNK+LK LE
Sbjct: 68 LLYKYKDSSKKPAIRGADNEEKVVFKIIEEAGNKGIWIRDIRFKSNLNMTQLNKVLKSLE 127
Query: 72 TKKIIKAVKSVA 83
TKKIIKAVKSV+
Sbjct: 128 TKKIIKAVKSVS 139
>gi|45361485|ref|NP_989319.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Xenopus
(Silurana) tropicalis]
gi|39794390|gb|AAH64209.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Xenopus
(Silurana) tropicalis]
Length = 314
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 69/87 (79%), Gaps = 4/87 (4%)
Query: 1 MLANGFL----IGGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKS 56
+LA G L G LLY++KDP T K+K SDN+EK+VY+IIE+A NKGIW RDIR+KS
Sbjct: 55 LLATGQLDLLRSGAGLLYRLKDPQTAGKMKGSDNQEKLVYQIIEDADNKGIWSRDIRYKS 114
Query: 57 NLMPTQLNKILKQLETKKIIKAVKSVA 83
NL T++NKILK LE+KK+IKAVKSVA
Sbjct: 115 NLPLTEINKILKNLESKKLIKAVKSVA 141
>gi|432948705|ref|XP_004084130.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like,
partial [Oryzias latipes]
Length = 191
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 52/75 (69%), Positives = 63/75 (84%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
LLY++KD T K+K SDN+EK+VY+IIE+AGNKGIW RDIRFKSNL T++NKILK
Sbjct: 69 SSGLLYRLKDSQTASKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRFKSNLPLTEINKILK 128
Query: 69 QLETKKIIKAVKSVA 83
LE+KK+IKAVKSVA
Sbjct: 129 NLESKKLIKAVKSVA 143
>gi|348538120|ref|XP_003456540.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Oreochromis niloticus]
Length = 316
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 63/75 (84%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
LLY++KD + K+K SDN+EK+VY+IIE+AGNKGIW RDIRFKSNL T++NKILK
Sbjct: 69 SAGLLYRLKDSQSTSKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRFKSNLPLTEINKILK 128
Query: 69 QLETKKIIKAVKSVA 83
LE+KK+IKAVKSVA
Sbjct: 129 NLESKKLIKAVKSVA 143
>gi|307174837|gb|EFN65131.1| DNA-directed RNA polymerase III subunit RPC6 [Camponotus
floridanus]
Length = 311
Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 61/74 (82%), Gaps = 2/74 (2%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ 69
G L Y+++DP + +K +DNEEKVVYKIIEEAGNKGIW RDIRFKSNLM TQL KILK
Sbjct: 78 GVLSYRLRDPT--KIVKGADNEEKVVYKIIEEAGNKGIWTRDIRFKSNLMHTQLKKILKS 135
Query: 70 LETKKIIKAVKSVA 83
LETKK IK VKSVA
Sbjct: 136 LETKKFIKVVKSVA 149
>gi|410917566|ref|XP_003972257.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Takifugu rubripes]
Length = 316
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 63/72 (87%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD + K+K SDN+EK+VY+IIE+AGNKGIW RDIRFKSNL T++NKILK LE
Sbjct: 72 LLYRMKDLQSTSKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRFKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>gi|322791297|gb|EFZ15814.1| hypothetical protein SINV_06955 [Solenopsis invicta]
Length = 306
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/87 (63%), Positives = 63/87 (72%), Gaps = 6/87 (6%)
Query: 1 MLANGFL----IGGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKS 56
+L+ G+ G L Y++KDP K +DNEEK+VY+IIEEAGNKGIW RDIRFKS
Sbjct: 60 LLSQGYFDLFKQAGLLFYRLKDPTKLAKC--ADNEEKIVYRIIEEAGNKGIWTRDIRFKS 117
Query: 57 NLMPTQLNKILKQLETKKIIKAVKSVA 83
NLM TQL KILK LETKK IK VK VA
Sbjct: 118 NLMHTQLQKILKSLETKKFIKVVKPVA 144
>gi|195112652|ref|XP_002000886.1| GI22278 [Drosophila mojavensis]
gi|193917480|gb|EDW16347.1| GI22278 [Drosophila mojavensis]
Length = 293
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/75 (72%), Positives = 60/75 (80%), Gaps = 1/75 (1%)
Query: 9 GGNLLYKVKDPVTNEKL-KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKIL 67
G L+Y+ KDP L KD+DNEEKVVY I+EE GNKGIW+RDIR KSNL TQLNKIL
Sbjct: 56 GEKLIYRAKDPEKKSALPKDADNEEKVVYSIVEEGGNKGIWIRDIRMKSNLNMTQLNKIL 115
Query: 68 KQLETKKIIKAVKSV 82
K LETKK+IKAVKSV
Sbjct: 116 KNLETKKLIKAVKSV 130
>gi|224047392|ref|XP_002198916.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6
[Taeniopygia guttata]
Length = 314
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/75 (66%), Positives = 62/75 (82%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK
Sbjct: 67 SAGLLYRIKDSQNASKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILK 126
Query: 69 QLETKKIIKAVKSVA 83
LE+KK+IKAVKSVA
Sbjct: 127 NLESKKLIKAVKSVA 141
>gi|195390233|ref|XP_002053773.1| GJ24071 [Drosophila virilis]
gi|194151859|gb|EDW67293.1| GJ24071 [Drosophila virilis]
Length = 293
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/75 (70%), Positives = 60/75 (80%), Gaps = 1/75 (1%)
Query: 9 GGNLLYKVKDPVTNEKL-KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKIL 67
G L+Y+ KDP L KD+DNEEK+VY I+EE GNKGIW+RDIR KSNL TQLNKIL
Sbjct: 56 GEKLIYRAKDPQKKSALPKDADNEEKIVYSIVEEGGNKGIWIRDIRMKSNLNMTQLNKIL 115
Query: 68 KQLETKKIIKAVKSV 82
K LETKK+IKAVKSV
Sbjct: 116 KNLETKKLIKAVKSV 130
>gi|157821329|ref|NP_001101254.1| DNA-directed RNA polymerase III subunit RPC6 [Rattus norvegicus]
gi|149041225|gb|EDL95158.1| polymerase (RNA) III (DNA directed) polypeptide F (predicted),
isoform CRA_a [Rattus norvegicus]
Length = 371
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 127 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 186
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 187 SKKLIKAVKSVA 198
>gi|195053568|ref|XP_001993698.1| GH19703 [Drosophila grimshawi]
gi|193895568|gb|EDV94434.1| GH19703 [Drosophila grimshawi]
Length = 294
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 53/75 (70%), Positives = 60/75 (80%), Gaps = 1/75 (1%)
Query: 9 GGNLLYKVKDPVTNEKL-KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKIL 67
G L+Y+ KDP L KD+DNEEK+VY I+EE GNKGIW+RDIR KSNL TQLNKIL
Sbjct: 57 GEKLIYRAKDPQKKSALPKDADNEEKIVYSIVEEGGNKGIWIRDIRIKSNLNMTQLNKIL 116
Query: 68 KQLETKKIIKAVKSV 82
K LETKK+IKAVKSV
Sbjct: 117 KNLETKKLIKAVKSV 131
>gi|318037614|ref|NP_001188039.1| DNA-directed RNA polymerase III subunit rpc6 [Ictalurus punctatus]
gi|308324663|gb|ADO29466.1| DNA-directed RNA polymerase III subunit rpc6 [Ictalurus punctatus]
Length = 314
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 63/72 (87%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD + K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 70 LLYRLKDTQSASKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 129
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 130 SKKLIKAVKSVA 141
>gi|226442700|ref|NP_001139930.1| DNA-directed RNA polymerase III subunit RPC6 [Salmo salar]
gi|221220164|gb|ACM08743.1| DNA-directed RNA polymerase III subunit RPC6 [Salmo salar]
Length = 314
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 63/72 (87%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD T K+K SDN+EK+VY++IE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 70 LLYRMKDAQTAGKMKGSDNQEKLVYQVIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 129
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 130 SKKLIKAVKSVA 141
>gi|47210380|emb|CAF95575.1| unnamed protein product [Tetraodon nigroviridis]
Length = 275
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD + K+K SDN+EK+VY+IIE+AGNKGIW RDIRFKSNL T++NKILK LE
Sbjct: 31 LLYRMKDLQSTSKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRFKSNLPLTEINKILKNLE 90
Query: 72 TKKIIKAVKSVA 83
KK+IKAVKSVA
Sbjct: 91 GKKLIKAVKSVA 102
>gi|41055399|ref|NP_957481.1| DNA-directed RNA polymerase III subunit RPC6 [Danio rerio]
gi|30353810|gb|AAH51782.1| Polymerase (RNA) III (DNA directed) polypeptide F [Danio rerio]
Length = 314
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 63/72 (87%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD + K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 70 LLYRLKDTQSASKVKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 129
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 130 SKKLIKAVKSVA 141
>gi|42542458|gb|AAH66497.1| Polr3f protein [Danio rerio]
Length = 314
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 63/72 (87%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD + K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 70 LLYRLKDTQSASKVKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 129
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 130 SKKLIKAVKSVA 141
>gi|157138209|ref|XP_001664177.1| DNA-directed RNA polymerase III, 34kD-subunit, putative [Aedes
aegypti]
gi|108880662|gb|EAT44887.1| AAEL003786-PA [Aedes aegypti]
Length = 328
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/75 (68%), Positives = 60/75 (80%), Gaps = 1/75 (1%)
Query: 9 GGNLLYKVKDPVTNEKL-KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKIL 67
G L+Y++KDP KD DNEEK++Y IIEE GNKGIW+RDIR KSNL+ TQLNK+L
Sbjct: 91 GATLIYRLKDPSKKSTAPKDIDNEEKIIYNIIEEGGNKGIWIRDIRVKSNLIMTQLNKVL 150
Query: 68 KQLETKKIIKAVKSV 82
KQLE KK+IKAVKSV
Sbjct: 151 KQLENKKLIKAVKSV 165
>gi|348581574|ref|XP_003476552.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Cavia
porcellus]
Length = 316
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/74 (67%), Positives = 62/74 (83%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ 69
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK
Sbjct: 70 AGLLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKN 129
Query: 70 LETKKIIKAVKSVA 83
LE+KK+IKAVKSVA
Sbjct: 130 LESKKLIKAVKSVA 143
>gi|2228752|gb|AAB63677.1| RNA polymerase III subunit [Homo sapiens]
Length = 317
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>gi|148696517|gb|EDL28464.1| polymerase (RNA) III (DNA directed) polypeptide F, isoform CRA_d
[Mus musculus]
Length = 287
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 107 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 166
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 167 SKKLIKAVKSVA 178
>gi|47197137|emb|CAF88729.1| unnamed protein product [Tetraodon nigroviridis]
Length = 123
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD + K+K SDN+EK+VY+IIE+AGNKGIW RDIRFKSNL T++NKILK LE
Sbjct: 52 LLYRMKDLQSTSKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRFKSNLPLTEINKILKNLE 111
Query: 72 TKKIIKAVKSVA 83
KK+IKAVKSVA
Sbjct: 112 GKKLIKAVKSVA 123
>gi|114681157|ref|XP_001141875.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 2
[Pan troglodytes]
gi|395751982|ref|XP_003779338.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 2
[Pongo abelii]
gi|397478658|ref|XP_003810659.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 2
[Pan paniscus]
gi|426391057|ref|XP_004061903.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 2
[Gorilla gorilla gorilla]
gi|116284007|gb|AAH16761.1| POLR3F protein [Homo sapiens]
gi|119630646|gb|EAX10241.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa, isoform
CRA_c [Homo sapiens]
Length = 275
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 31 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 90
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 91 SKKLIKAVKSVA 102
>gi|281352669|gb|EFB28253.1| hypothetical protein PANDA_015203 [Ailuropoda melanoleuca]
Length = 296
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 52 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 111
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 112 SKKLIKAVKSVA 123
>gi|148696516|gb|EDL28463.1| polymerase (RNA) III (DNA directed) polypeptide F, isoform CRA_c
[Mus musculus]
Length = 238
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>gi|149041226|gb|EDL95159.1| polymerase (RNA) III (DNA directed) polypeptide F (predicted),
isoform CRA_b [Rattus norvegicus]
Length = 293
Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 127 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 186
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 187 SKKLIKAVKSVA 198
>gi|351715903|gb|EHB18822.1| DNA-directed RNA polymerase III subunit RPC6 [Heterocephalus
glaber]
Length = 316
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>gi|344280110|ref|XP_003411828.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Loxodonta africana]
Length = 316
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>gi|386781237|ref|NP_001247594.1| DNA-directed RNA polymerase III subunit RPC6 [Macaca mulatta]
gi|402883312|ref|XP_003905166.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Papio
anubis]
gi|355563390|gb|EHH19952.1| DNA-directed RNA polymerase III subunit RPC6 [Macaca mulatta]
gi|355784723|gb|EHH65574.1| DNA-directed RNA polymerase III subunit RPC6 [Macaca fascicularis]
gi|380783835|gb|AFE63793.1| DNA-directed RNA polymerase III subunit RPC6 [Macaca mulatta]
gi|383410145|gb|AFH28286.1| DNA-directed RNA polymerase III subunit RPC6 [Macaca mulatta]
Length = 316
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>gi|350594676|ref|XP_003483946.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 1
[Sus scrofa]
Length = 316
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>gi|426240919|ref|XP_004014341.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Ovis
aries]
gi|296481393|tpg|DAA23508.1| TPA: DNA-directed RNA polymerase III subunit RPC6 [Bos taurus]
gi|440911603|gb|ELR61252.1| DNA-directed RNA polymerase III subunit RPC6 [Bos grunniens mutus]
Length = 316
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>gi|195445244|ref|XP_002070239.1| GK11949 [Drosophila willistoni]
gi|194166324|gb|EDW81225.1| GK11949 [Drosophila willistoni]
Length = 295
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/75 (72%), Positives = 60/75 (80%), Gaps = 1/75 (1%)
Query: 9 GGNLLYKVKDPVTNEKL-KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKIL 67
G L+Y+ KDP L KD+DNEEKVVY I+EE GNKGIW+RDIR KSNL TQLNKIL
Sbjct: 58 GEKLIYRAKDPEKVSALPKDADNEEKVVYGIVEEGGNKGIWIRDIRMKSNLNMTQLNKIL 117
Query: 68 KQLETKKIIKAVKSV 82
K LETKK+IKAVKSV
Sbjct: 118 KNLETKKLIKAVKSV 132
>gi|291388976|ref|XP_002710999.1| PREDICTED: DNA-directed RNA polymerase III 39 kDa polypeptide F
[Oryctolagus cuniculus]
Length = 316
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>gi|27754160|ref|NP_084039.2| DNA-directed RNA polymerase III subunit RPC6 [Mus musculus]
gi|20139517|sp|Q921X6.1|RPC6_MOUSE RecName: Full=DNA-directed RNA polymerase III subunit RPC6;
Short=RNA polymerase III subunit C6; AltName:
Full=DNA-directed RNA polymerase III subunit F
gi|14318737|gb|AAH09159.1| Polymerase (RNA) III (DNA directed) polypeptide F [Mus musculus]
gi|26331194|dbj|BAC29327.1| unnamed protein product [Mus musculus]
gi|26345468|dbj|BAC36385.1| unnamed protein product [Mus musculus]
gi|74194833|dbj|BAE26008.1| unnamed protein product [Mus musculus]
gi|126035615|gb|ABN72532.1| DNA-directed RNA polymerase III polypeptide F [Mus spretus]
gi|148696514|gb|EDL28461.1| polymerase (RNA) III (DNA directed) polypeptide F, isoform CRA_a
[Mus musculus]
Length = 316
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>gi|395851941|ref|XP_003798506.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Otolemur
garnettii]
Length = 316
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>gi|84000271|ref|NP_001033237.1| DNA-directed RNA polymerase III subunit RPC6 [Bos taurus]
gi|110816413|sp|Q2T9S3.1|RPC6_BOVIN RecName: Full=DNA-directed RNA polymerase III subunit RPC6;
Short=RNA polymerase III subunit C6; AltName:
Full=DNA-directed RNA polymerase III subunit F
gi|83405748|gb|AAI11293.1| Polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Bos
taurus]
Length = 316
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>gi|33598952|ref|NP_006457.2| DNA-directed RNA polymerase III subunit RPC6 [Homo sapiens]
gi|297706431|ref|XP_002830042.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 1
[Pongo abelii]
gi|332238168|ref|XP_003268274.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Nomascus
leucogenys]
gi|332858027|ref|XP_003316891.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Pan
troglodytes]
gi|397478656|ref|XP_003810658.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 1
[Pan paniscus]
gi|426391055|ref|XP_004061902.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 1
[Gorilla gorilla gorilla]
gi|20139728|sp|Q9H1D9.1|RPC6_HUMAN RecName: Full=DNA-directed RNA polymerase III subunit RPC6;
Short=RNA polymerase III subunit C6; AltName:
Full=DNA-directed RNA polymerase III subunit F; AltName:
Full=RNA polymerase III 39 kDa subunit; Short=RPC39
gi|15214899|gb|AAH12588.1| Polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Homo
sapiens]
gi|119630645|gb|EAX10240.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa, isoform
CRA_b [Homo sapiens]
gi|123984551|gb|ABM83621.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa
[synthetic construct]
gi|123999175|gb|ABM87168.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa
[synthetic construct]
gi|158255220|dbj|BAF83581.1| unnamed protein product [Homo sapiens]
gi|208967094|dbj|BAG73561.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa
[synthetic construct]
gi|410211180|gb|JAA02809.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Pan
troglodytes]
gi|410261662|gb|JAA18797.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Pan
troglodytes]
gi|410293744|gb|JAA25472.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Pan
troglodytes]
gi|410330073|gb|JAA33983.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Pan
troglodytes]
Length = 316
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>gi|296200276|ref|XP_002747521.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Callithrix
jacchus]
gi|403283636|ref|XP_003933219.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Saimiri
boliviensis boliviensis]
Length = 316
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>gi|301780510|ref|XP_002925671.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Ailuropoda melanoleuca]
gi|410954415|ref|XP_003983860.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Felis
catus]
Length = 316
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>gi|387915870|gb|AFK11544.1| DNA-directed RNA polymerase III subunit RPC6 [Callorhinchus milii]
Length = 314
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 62/75 (82%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK
Sbjct: 67 AAGLLYRMKDSQIASKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILK 126
Query: 69 QLETKKIIKAVKSVA 83
+E+KK+IKAVKSVA
Sbjct: 127 NMESKKLIKAVKSVA 141
>gi|431894136|gb|ELK03936.1| DNA-directed RNA polymerase III subunit RPC6 [Pteropus alecto]
Length = 316
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>gi|345790127|ref|XP_857138.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 2
[Canis lupus familiaris]
Length = 316
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>gi|417398858|gb|JAA46462.1| Putative rna polymerase iii subunit c34 [Desmodus rotundus]
Length = 316
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>gi|26325236|dbj|BAC26372.1| unnamed protein product [Mus musculus]
Length = 316
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKDSRNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>gi|345329112|ref|XP_001515545.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC6
[Ornithorhynchus anatinus]
Length = 316
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 63/72 (87%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++K+ + K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKESQSTGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>gi|62898157|dbj|BAD97018.1| DNA-directed RNA polymerase III 39 kDa polypeptide F variant [Homo
sapiens]
Length = 316
Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RD+R+KSNL T++NKILK LE
Sbjct: 72 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>gi|49618979|gb|AAT68074.1| RNA polymerase III 39kDa subunit [Danio rerio]
Length = 314
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 63/72 (87%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD + K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSN+ T++NKILK LE
Sbjct: 70 LLYRLKDTQSASKVKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNVPLTEINKILKNLE 129
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 130 SKKLIKAVKSVA 141
>gi|449275236|gb|EMC84159.1| DNA-directed RNA polymerase III subunit RPC6 [Columba livia]
Length = 314
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 62/74 (83%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ 69
LLY++K+ K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK
Sbjct: 68 AGLLYRIKESQNASKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKN 127
Query: 70 LETKKIIKAVKSVA 83
LE+KK+IKAVKSVA
Sbjct: 128 LESKKLIKAVKSVA 141
>gi|313661432|ref|NP_001186330.1| DNA-directed RNA polymerase III subunit RPC6 [Gallus gallus]
Length = 314
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/74 (66%), Positives = 62/74 (83%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ 69
LLY++K+ K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK
Sbjct: 68 AGLLYRIKESQNASKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKN 127
Query: 70 LETKKIIKAVKSVA 83
LE+KK+IKAVKSVA
Sbjct: 128 LESKKLIKAVKSVA 141
>gi|326914992|ref|XP_003203806.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Meleagris gallopavo]
Length = 314
Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 62/75 (82%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
LLY++K+ K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK
Sbjct: 67 SSGLLYRIKESQNASKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILK 126
Query: 69 QLETKKIIKAVKSVA 83
LE+KK+IKAVKSVA
Sbjct: 127 NLESKKLIKAVKSVA 141
>gi|346468447|gb|AEO34068.1| hypothetical protein [Amblyomma maculatum]
Length = 333
Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 61/73 (83%)
Query: 11 NLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQL 70
LLY++KD ++K K SD EEKVVYKI+EEAGNKGIW+RDIR KS L+ T LNKILK L
Sbjct: 70 QLLYRLKDSDADKKCKGSDREEKVVYKIVEEAGNKGIWIRDIRNKSGLVLTSLNKILKSL 129
Query: 71 ETKKIIKAVKSVA 83
E+KK+IKAVKSV+
Sbjct: 130 ESKKLIKAVKSVS 142
>gi|126303656|ref|XP_001374149.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Monodelphis domestica]
Length = 316
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++K+ K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKESQNTGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>gi|194224116|ref|XP_001490686.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC6-like [Equus caballus]
Length = 316
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 61/72 (84%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKDSQNAGKXKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>gi|195572836|ref|XP_002104401.1| GD18467 [Drosophila simulans]
gi|194200328|gb|EDX13904.1| GD18467 [Drosophila simulans]
Length = 280
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/75 (70%), Positives = 59/75 (78%), Gaps = 1/75 (1%)
Query: 9 GGNLLYKVKDPVTNEKL-KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKIL 67
G L+Y+ KDP L KD+DNEEKVVY I+EE GNKGIW+RDIR KSNL QLNKIL
Sbjct: 56 GEKLVYRAKDPEKKSALPKDADNEEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQLNKIL 115
Query: 68 KQLETKKIIKAVKSV 82
K LETKK+IKAVKSV
Sbjct: 116 KNLETKKLIKAVKSV 130
>gi|327270311|ref|XP_003219933.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Anolis carolinensis]
Length = 310
Score = 100 bits (249), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++K+ K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 66 LLYRIKESQNAGKMKGSDNQEKLVYQIIEDAGNKGIWTRDIRYKSNLPLTEINKILKNLE 125
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 126 SKKLIKAVKSVA 137
>gi|195330977|ref|XP_002032179.1| GM23658 [Drosophila sechellia]
gi|194121122|gb|EDW43165.1| GM23658 [Drosophila sechellia]
Length = 293
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/75 (70%), Positives = 59/75 (78%), Gaps = 1/75 (1%)
Query: 9 GGNLLYKVKDPVTNEKL-KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKIL 67
G L+Y+ KDP L KD+DNEEKVVY I+EE GNKGIW+RDIR KSNL QLNKIL
Sbjct: 56 GEKLVYRAKDPEKKSALPKDADNEEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQLNKIL 115
Query: 68 KQLETKKIIKAVKSV 82
K LETKK+IKAVKSV
Sbjct: 116 KNLETKKLIKAVKSV 130
>gi|194911143|ref|XP_001982296.1| GG12523 [Drosophila erecta]
gi|190656934|gb|EDV54166.1| GG12523 [Drosophila erecta]
Length = 293
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/75 (70%), Positives = 59/75 (78%), Gaps = 1/75 (1%)
Query: 9 GGNLLYKVKDPVTNEKL-KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKIL 67
G L+Y+ KDP L KD+DNEEKVVY I+EE GNKGIW+RDIR KSNL QLNKIL
Sbjct: 56 GEKLVYRAKDPEKKSALPKDADNEEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQLNKIL 115
Query: 68 KQLETKKIIKAVKSV 82
K LETKK+IKAVKSV
Sbjct: 116 KNLETKKLIKAVKSV 130
>gi|159164846|pdb|2YU3|A Chain A, Solution Structure Of The Domain Swapped Wingedhelix In
Dna- Directed Rna Polymerase Iii 39 Kda Polypeptide
Length = 95
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RD+R+KSNL T++NKILK LE
Sbjct: 19 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLE 78
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSV+
Sbjct: 79 SKKLIKAVKSVS 90
>gi|24648960|ref|NP_651029.1| CG5380, isoform A [Drosophila melanogaster]
gi|386766236|ref|NP_001247237.1| CG5380, isoform B [Drosophila melanogaster]
gi|20139853|sp|Q9VD25.1|RPC6_DROME RecName: Full=Probable DNA-directed RNA polymerase III subunit
RPC6; Short=DNA-directed RNA polymerase III subunit F;
Short=RNA polymerase III subunit C6
gi|7300836|gb|AAF55978.1| CG5380, isoform A [Drosophila melanogaster]
gi|21430846|gb|AAM51101.1| SD19581p [Drosophila melanogaster]
gi|220950288|gb|ACL87687.1| CG5380-PA [synthetic construct]
gi|220959240|gb|ACL92163.1| CG5380-PA [synthetic construct]
gi|295293321|gb|ADF87926.1| MIP22258p [Drosophila melanogaster]
gi|383292866|gb|AFH06555.1| CG5380, isoform B [Drosophila melanogaster]
Length = 293
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/75 (70%), Positives = 59/75 (78%), Gaps = 1/75 (1%)
Query: 9 GGNLLYKVKDPVTNEKL-KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKIL 67
G L+Y+ KDP L KD+DNEEKVVY I+EE GNKGIW+RDIR KSNL QLNKIL
Sbjct: 56 GEKLVYRAKDPEKKSALPKDADNEEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQLNKIL 115
Query: 68 KQLETKKIIKAVKSV 82
K LETKK+IKAVKSV
Sbjct: 116 KNLETKKLIKAVKSV 130
>gi|357612377|gb|EHJ67947.1| putative DNA-directed RNA polymerase III 39 kDa polypeptide [Danaus
plexippus]
Length = 269
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 61/74 (82%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
GG+LLY++K+ + + +K +DNEEKVVY +IEEAGNKGIW+RDIR +SNL TQL K+LK
Sbjct: 32 GGSLLYRLKNQNSKQAIKGADNEEKVVYNLIEEAGNKGIWIRDIRIRSNLANTQLTKVLK 91
Query: 69 QLETKKIIKAVKSV 82
LE KK+IKAVK V
Sbjct: 92 SLEGKKVIKAVKCV 105
>gi|195502543|ref|XP_002098270.1| GE24046 [Drosophila yakuba]
gi|194184371|gb|EDW97982.1| GE24046 [Drosophila yakuba]
Length = 293
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/75 (70%), Positives = 59/75 (78%), Gaps = 1/75 (1%)
Query: 9 GGNLLYKVKDPVTNEKL-KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKIL 67
G L+Y+ KDP L KD+DNEEKVVY I+EE GNKGIW+RDIR KSNL QLNKIL
Sbjct: 56 GEKLVYRAKDPEKKSALPKDADNEEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQLNKIL 115
Query: 68 KQLETKKIIKAVKSV 82
K LETKK+IKAVKSV
Sbjct: 116 KNLETKKLIKAVKSV 130
>gi|395829733|ref|XP_003788000.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC6-like [Otolemur garnettii]
Length = 310
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/75 (65%), Positives = 63/75 (84%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
G LLY+++D K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KS+L T++NKILK
Sbjct: 64 GTGLLYRIEDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSDLPLTEVNKILK 123
Query: 69 QLETKKIIKAVKSVA 83
LE+KK+IKAVKSVA
Sbjct: 124 NLESKKLIKAVKSVA 138
>gi|118792885|ref|XP_320558.3| AGAP011973-PA [Anopheles gambiae str. PEST]
gi|116117113|gb|EAA00356.3| AGAP011973-PA [Anopheles gambiae str. PEST]
Length = 295
Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/75 (66%), Positives = 61/75 (81%), Gaps = 1/75 (1%)
Query: 9 GGNLLYKVKDPVT-NEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKIL 67
G L+Y++KDP + KD DNEE+V+Y I+EE GNKGIW+RDIR KSNL+ TQLNK+L
Sbjct: 58 GNTLIYRLKDPGKKSSAPKDIDNEERVIYNIVEEGGNKGIWIRDIRVKSNLVMTQLNKVL 117
Query: 68 KQLETKKIIKAVKSV 82
KQLE KK+IKAVKSV
Sbjct: 118 KQLENKKLIKAVKSV 132
>gi|354468114|ref|XP_003496512.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Cricetulus griseus]
Length = 316
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++K+ K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKETQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>gi|390339281|ref|XP_785983.3| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
isoform 1 [Strongylocentrotus purpuratus]
Length = 311
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 61/72 (84%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L+Y++KDP K+K +DN+E++VY+IIE++GNKGIW RDIR KSNL TQLNKILK LE
Sbjct: 69 LVYRLKDPGVVSKIKGADNQERLVYQIIEQSGNKGIWTRDIRLKSNLQLTQLNKILKNLE 128
Query: 72 TKKIIKAVKSVA 83
++K+IKAVKSV
Sbjct: 129 SRKLIKAVKSVG 140
>gi|125775055|ref|XP_001358779.1| GA18836 [Drosophila pseudoobscura pseudoobscura]
gi|195145010|ref|XP_002013489.1| GL24167 [Drosophila persimilis]
gi|54638520|gb|EAL27922.1| GA18836 [Drosophila pseudoobscura pseudoobscura]
gi|194102432|gb|EDW24475.1| GL24167 [Drosophila persimilis]
Length = 293
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/75 (69%), Positives = 59/75 (78%), Gaps = 1/75 (1%)
Query: 9 GGNLLYKVKDPVTNEKL-KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKIL 67
G L+Y+ KDP L KD+DNEEK+VY I+EE NKGIW+RDIR KSNL TQLNKIL
Sbjct: 56 GEKLVYRAKDPEKKSALPKDADNEEKIVYGIVEEGSNKGIWIRDIRMKSNLNMTQLNKIL 115
Query: 68 KQLETKKIIKAVKSV 82
K LETKK+IKAVKSV
Sbjct: 116 KNLETKKLIKAVKSV 130
>gi|170064626|ref|XP_001867603.1| DNA-directed RNA polymerase III subunit F [Culex quinquefasciatus]
gi|167881952|gb|EDS45335.1| DNA-directed RNA polymerase III subunit F [Culex quinquefasciatus]
Length = 305
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/75 (66%), Positives = 60/75 (80%), Gaps = 1/75 (1%)
Query: 9 GGNLLYKVKDPVTNEKL-KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKIL 67
G L+Y++KDP KD DNEEK++Y IIEE GN+GIW+RDIR KSNL+ TQLNK+L
Sbjct: 68 GQTLIYRLKDPGKKSTAPKDIDNEEKIIYAIIEEGGNRGIWIRDIRVKSNLIMTQLNKVL 127
Query: 68 KQLETKKIIKAVKSV 82
KQLE KK+IKAVKSV
Sbjct: 128 KQLENKKLIKAVKSV 142
>gi|344239296|gb|EGV95399.1| Protein transport protein Sec23B [Cricetulus griseus]
Length = 630
Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 49/68 (72%), Positives = 59/68 (86%), Gaps = 2/68 (2%)
Query: 18 DPVT--NEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKI 75
DPV N K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE+KK+
Sbjct: 14 DPVEIENSKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKL 73
Query: 76 IKAVKSVA 83
IKAVKSVA
Sbjct: 74 IKAVKSVA 81
>gi|194743126|ref|XP_001954051.1| GF16937 [Drosophila ananassae]
gi|190627088|gb|EDV42612.1| GF16937 [Drosophila ananassae]
Length = 293
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/75 (69%), Positives = 59/75 (78%), Gaps = 1/75 (1%)
Query: 9 GGNLLYKVKDPVTNEKL-KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKIL 67
G L+Y+ +DP L KD+DNEEKVVY I+EE GNKGIW+RDIR KSNL QLNKIL
Sbjct: 56 GEKLVYRARDPEKKSALPKDADNEEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQLNKIL 115
Query: 68 KQLETKKIIKAVKSV 82
K LETKK+IKAVKSV
Sbjct: 116 KNLETKKLIKAVKSV 130
>gi|260831248|ref|XP_002610571.1| hypothetical protein BRAFLDRAFT_117854 [Branchiostoma floridae]
gi|229295938|gb|EEN66581.1| hypothetical protein BRAFLDRAFT_117854 [Branchiostoma floridae]
Length = 317
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 62/74 (83%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ 69
G L+Y++KD +K +DN+EK+VY+II +AGNKGIW+RDIR++ N+M TQLNKIL+
Sbjct: 73 GGLIYRLKDTQGTNVIKGADNQEKLVYQIITDAGNKGIWIRDIRYRCNIMITQLNKILRN 132
Query: 70 LETKKIIKAVKSVA 83
LE+KK+IK+VKSVA
Sbjct: 133 LESKKLIKSVKSVA 146
>gi|427788023|gb|JAA59463.1| Putative dna-directed rna polymerase iii subunit rpc6
[Rhipicephalus pulchellus]
Length = 335
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 60/72 (83%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++K+ + K K SD EEKVVYKI+EEAGNKGIW+RDIR KS L+ T LNKILK LE
Sbjct: 71 LLYRLKNTDADSKCKGSDREEKVVYKIVEEAGNKGIWIRDIRIKSGLVLTALNKILKNLE 130
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSV+
Sbjct: 131 SKKLIKAVKSVS 142
>gi|289740045|gb|ADD18770.1| putative E3 ubiquitin ligase [Glossina morsitans morsitans]
Length = 294
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/74 (68%), Positives = 59/74 (79%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
G L Y+ K+P + KD+DNEEK+VY IIEE GNKGIW+RDIR +SNL TQLNKILK
Sbjct: 58 GEKLYYRSKEPKKSVLPKDADNEEKIVYGIIEEGGNKGIWIRDIRLQSNLNMTQLNKILK 117
Query: 69 QLETKKIIKAVKSV 82
LETKK+IKAVKSV
Sbjct: 118 NLETKKLIKAVKSV 131
>gi|389612872|dbj|BAM19835.1| DNA-directed RNA polymerase III, 34kD-subunit, partial [Papilio
xuthus]
Length = 286
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 61/74 (82%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
GG+L+Y++K + + +K +DNEEKVVY +IE+AGNKGIW+RDIR +SN+ TQL K+LK
Sbjct: 61 GGSLIYRLKGQTSKQAVKGADNEEKVVYNLIEDAGNKGIWIRDIRLRSNIANTQLTKVLK 120
Query: 69 QLETKKIIKAVKSV 82
LE+KK+IKAVK V
Sbjct: 121 NLESKKVIKAVKCV 134
>gi|350594678|ref|XP_003483947.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 2
[Sus scrofa]
Length = 323
Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 65/79 (82%), Gaps = 7/79 (8%)
Query: 12 LLYKVKD-----PVTN--EKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLN 64
LLY++KD PV+ K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++N
Sbjct: 72 LLYRIKDSQNAGPVSFFLSKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEIN 131
Query: 65 KILKQLETKKIIKAVKSVA 83
KILK LE+KK+IKAVKSVA
Sbjct: 132 KILKNLESKKLIKAVKSVA 150
>gi|355712768|gb|AES04459.1| polymerase III polypeptide F, 39 kDa [Mustela putorius furo]
Length = 298
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 65/79 (82%), Gaps = 7/79 (8%)
Query: 12 LLYKVKD-----PVTN--EKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLN 64
LLY++KD PV+ K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++N
Sbjct: 72 LLYRIKDSQNAGPVSFFLSKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEIN 131
Query: 65 KILKQLETKKIIKAVKSVA 83
KILK LE+KK+IKAVKSVA
Sbjct: 132 KILKNLESKKLIKAVKSVA 150
>gi|312377801|gb|EFR24541.1| hypothetical protein AND_10775 [Anopheles darlingi]
Length = 318
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/87 (59%), Positives = 65/87 (74%), Gaps = 5/87 (5%)
Query: 1 MLANGFL----IGGNLLYKVKDPVTNEKL-KDSDNEEKVVYKIIEEAGNKGIWMRDIRFK 55
+LA+G L G L+Y++KDP + KD D EE+V+Y I+EE GNKGIW+RDIR K
Sbjct: 46 LLADGVLEILKKGTTLIYRLKDPGKKSNVPKDIDAEERVIYTIVEEGGNKGIWIRDIRVK 105
Query: 56 SNLMPTQLNKILKQLETKKIIKAVKSV 82
SNL+ TQL K+LKQLE KK+IKAVKSV
Sbjct: 106 SNLVMTQLTKVLKQLENKKLIKAVKSV 132
>gi|444520451|gb|ELV13003.1| Protein transport protein Sec23B [Tupaia chinensis]
Length = 630
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 45/60 (75%), Positives = 55/60 (91%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83
K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE+KK+IKAVKSVA
Sbjct: 63 KMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVA 122
>gi|198424749|ref|XP_002126762.1| PREDICTED: similar to Polr3f protein [Ciona intestinalis]
Length = 310
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/75 (61%), Positives = 58/75 (77%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
L+Y++K P + DN+EK+VY+IIE AGNKGIW R+IR+K NLM T++NKILK
Sbjct: 68 SSGLIYRIKTPSAVGSISGVDNQEKLVYQIIESAGNKGIWTREIRYKCNLMLTEVNKILK 127
Query: 69 QLETKKIIKAVKSVA 83
LE+KKIIKAVKSVA
Sbjct: 128 NLESKKIIKAVKSVA 142
>gi|443693096|gb|ELT94539.1| hypothetical protein CAPTEDRAFT_19562 [Capitella teleta]
Length = 314
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 60/75 (80%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
G L+YK+KDP K K D +E+++Y+IIE+AGNKGIW+RDIR KSNL T +NK++K
Sbjct: 69 GSQLIYKLKDPDVGNKTKGGDTQEQIMYQIIEDAGNKGIWIRDIRTKSNLPMTAVNKLVK 128
Query: 69 QLETKKIIKAVKSVA 83
LE+KK+IKAVKSV+
Sbjct: 129 SLESKKVIKAVKSVS 143
>gi|156371113|ref|XP_001628610.1| predicted protein [Nematostella vectensis]
gi|156215591|gb|EDO36547.1| predicted protein [Nematostella vectensis]
Length = 315
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/76 (64%), Positives = 60/76 (78%), Gaps = 1/76 (1%)
Query: 9 GGNLLYKVKD-PVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKIL 67
G LLYK KD TN+K K + EEK+VY+ IEE+ NKGIW+RDIR+K NL TQLN+I+
Sbjct: 69 GSQLLYKYKDDQQTNQKTKGFELEEKLVYQTIEESSNKGIWIRDIRYKCNLQMTQLNRII 128
Query: 68 KQLETKKIIKAVKSVA 83
K LE+KK+IKAVKSVA
Sbjct: 129 KTLESKKLIKAVKSVA 144
>gi|322794611|gb|EFZ17619.1| hypothetical protein SINV_07872 [Solenopsis invicta]
Length = 129
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 60/92 (65%), Gaps = 9/92 (9%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L Y +KD + K +DNEEK+VY+IIEEAGN IW +DI+FKSNLM TQL KILK LE
Sbjct: 11 LFYLLKDSIKFAKC--ADNEEKIVYRIIEEAGNTRIWTQDIKFKSNLMHTQLQKILKSLE 68
Query: 72 TKKIIKAVKSVANIEYLTEGTVNAMVLPSRKK 103
KK IK VKSVA I N L SR +
Sbjct: 69 IKKFIKVVKSVAAI-------CNRRCLVSRSR 93
>gi|159164165|pdb|2DK5|A Chain A, Solution Structure Of Winged-Helix Domain In Rna
Polymerase Iii 39kda Polypeptide
Length = 91
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/60 (73%), Positives = 55/60 (91%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83
K+K SDN+EK+VY+IIE+AGNKGIW RD+R+KSNL T++NKILK LE+KK+IKAVKSVA
Sbjct: 14 KMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKSVA 73
>gi|119630644|gb|EAX10239.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa,
isoform CRA_a [Homo sapiens]
Length = 153
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/59 (74%), Positives = 54/59 (91%)
Query: 25 LKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83
+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE+KK+IKAVKSVA
Sbjct: 1 MKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVA 59
>gi|335775487|gb|AEH58588.1| DNA-directed RNA polymerase III subunit RPC-like protein [Equus
caballus]
Length = 230
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/56 (76%), Positives = 52/56 (92%)
Query: 28 SDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83
SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE+KK+IKAVKSVA
Sbjct: 2 SDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVA 57
>gi|332027979|gb|EGI68030.1| DNA-directed RNA polymerase III subunit RPC6 [Acromyrmex
echinatior]
Length = 306
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 59/86 (68%), Gaps = 6/86 (6%)
Query: 1 MLANGFL----IGGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKS 56
+L+ G+ +L Y++KDP K +DNEEK+VYKIIEEAGN+GIW+RDI+ KS
Sbjct: 60 LLSQGYFDLFKQANSLYYRLKDPTKLAKC--TDNEEKIVYKIIEEAGNQGIWIRDIKTKS 117
Query: 57 NLMPTQLNKILKQLETKKIIKAVKSV 82
NLM L KILK LET K +K VK V
Sbjct: 118 NLMNKPLEKILKSLETSKYVKVVKPV 143
>gi|196007462|ref|XP_002113597.1| hypothetical protein TRIADDRAFT_26289 [Trichoplax adhaerens]
gi|190584001|gb|EDV24071.1| hypothetical protein TRIADDRAFT_26289 [Trichoplax adhaerens]
Length = 307
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Query: 6 FLIGGNLLYKVKDPVTNEKLKDSDN-EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLN 64
F L+YK+KDP K +N +EK+VY++I +AGNKGIW RDIR K NL TQLN
Sbjct: 61 FKSDSQLIYKLKDPDLVSKNAICENTQEKLVYQVIGDAGNKGIWSRDIRLKCNLQMTQLN 120
Query: 65 KILKQLETKKIIKAVKSVA 83
KIL+ LE+KK+IKAVKSV
Sbjct: 121 KILRNLESKKLIKAVKSVT 139
>gi|427797839|gb|JAA64371.1| Putative dna-directed rna polymerase iii subunit rpc6, partial
[Rhipicephalus pulchellus]
Length = 329
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/97 (51%), Positives = 60/97 (61%), Gaps = 25/97 (25%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAG-------------------------NKG 46
LLY++K+ + K K SD EEKVVYKI+EEAG NKG
Sbjct: 71 LLYRLKNTDADSKCKGSDREEKVVYKIVEEAGNKGIWIRDIRIXXXXVVYKIVEEAGNKG 130
Query: 47 IWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83
IW+RDIR KS L+ T LNKILK LE+KK+IKAVKSV+
Sbjct: 131 IWIRDIRIKSGLVLTALNKILKNLESKKLIKAVKSVS 167
>gi|391335259|ref|XP_003742013.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Metaseiulus occidentalis]
Length = 355
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 56/75 (74%), Gaps = 3/75 (4%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
GG LLY+ D +K + + +E+VV+++IE AGNKGIW+RDIR S L+ QL+K+LK
Sbjct: 88 GGKLLYRFVD---QDKTRGCERDERVVFQVIERAGNKGIWIRDIRIFSGLVLAQLSKVLK 144
Query: 69 QLETKKIIKAVKSVA 83
LE KK+IK+VKSV+
Sbjct: 145 SLEVKKLIKSVKSVS 159
>gi|321451182|gb|EFX62917.1| hypothetical protein DAPPUDRAFT_130662 [Daphnia pulex]
Length = 298
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/60 (70%), Positives = 49/60 (81%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83
KLK D+EEK+V +IIEEAGNKGIW RDIR KS+L T LNKILK LE KK+IK+V SV+
Sbjct: 99 KLKGVDSEEKIVMRIIEEAGNKGIWNRDIRTKSSLNQTTLNKILKALEGKKLIKSVSSVS 158
>gi|392333133|ref|XP_003752804.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC6-like [Rattus norvegicus]
gi|392353214|ref|XP_003751428.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC6-like [Rattus norvegicus]
Length = 317
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 52/74 (70%)
Query: 11 NLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQL 70
+ LYK KD K+K SDN+E V +++E+AG KGIW DI KSN T++NKILK L
Sbjct: 145 DXLYKTKDSQNANKMKGSDNQENXVSQVMEDAGKKGIWSTDIXNKSNPPLTEINKILKNL 204
Query: 71 ETKKIIKAVKSVAN 84
E+ K IKA+KSVAN
Sbjct: 205 ESXKPIKALKSVAN 218
>gi|193613196|ref|XP_001944559.1| PREDICTED: probable DNA-directed RNA polymerase III subunit
RPC6-like [Acyrthosiphon pisum]
Length = 318
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 11 NLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQL 70
L YK K P T D++ EE VV+ +I ++G KGIW+RD+R KSNL +L KILK L
Sbjct: 82 TLRYKYKGP-TASTPGDANTEELVVFNLIRDSGRKGIWIRDVRIKSNLGLPRLKKILKSL 140
Query: 71 ETKKIIKAVKSVA 83
ETKK IKAVKSVA
Sbjct: 141 ETKKAIKAVKSVA 153
>gi|452825669|gb|EME32664.1| DNA-directed RNA polymerase III subunit C34 [Galdieria sulphuraria]
Length = 288
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/75 (50%), Positives = 48/75 (64%)
Query: 8 IGGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKIL 67
+ G L Y+ + KL+ EE++VY +EEAGNKGIW RD+R S L TQL KIL
Sbjct: 59 LHGKLFYQAVEEQVANKLQGLSTEERLVYSHVEEAGNKGIWTRDLRNISRLQQTQLTKIL 118
Query: 68 KQLETKKIIKAVKSV 82
K LE KK++K KSV
Sbjct: 119 KNLELKKLVKPFKSV 133
>gi|440800559|gb|ELR21595.1| DNA-directed RNA polymerase III 34kD-subunit family protein,
putative [Acanthamoeba castellanii str. Neff]
Length = 230
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 47/61 (77%)
Query: 23 EKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
EK K EE++VY +IE+ GN G+W RD++F+SNL T +NKILK L+ +K+IKAVKS+
Sbjct: 43 EKFKGLTQEERLVYSLIEKEGNMGLWTRDMKFRSNLQQTTINKILKTLQNRKLIKAVKSI 102
Query: 83 A 83
A
Sbjct: 103 A 103
>gi|170592535|ref|XP_001901020.1| RNA polymerase Rpc34 subunit family protein [Brugia malayi]
gi|158591087|gb|EDP29700.1| RNA polymerase Rpc34 subunit family protein [Brugia malayi]
Length = 325
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 48/61 (78%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83
++ D+ +EE+++Y +IEE+G KGIW+RDIR ++ L TQ+ K+LK LE +K++K++K+V
Sbjct: 107 QIADATHEEQLIYSLIEESGRKGIWIRDIRDRTGLSQTQMRKVLKVLEQRKLVKSIKAVG 166
Query: 84 N 84
Sbjct: 167 T 167
>gi|402590744|gb|EJW84674.1| RNA polymerase Rpc34 subunit family protein [Wuchereria bancrofti]
Length = 296
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 48/61 (78%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83
++ D+ +EE+++Y +IEE+G KGIW+RDIR ++ L TQ+ K+LK LE +K++K++K+V
Sbjct: 78 QIADATHEEQLIYSLIEESGKKGIWIRDIRDRTGLSQTQMRKVLKVLEQRKLVKSIKAVG 137
Query: 84 N 84
Sbjct: 138 T 138
>gi|320168667|gb|EFW45566.1| polymerase III polypeptide F [Capsaspora owczarzaki ATCC 30864]
Length = 349
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 45/64 (70%)
Query: 20 VTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAV 79
+ KL D +E+++Y+ IE N+GIW RD+R K+N+ QLNK LK+ ET K+IKAV
Sbjct: 86 ASASKLAGMDADERLIYQTIESVKNRGIWTRDLRHKTNIGIGQLNKTLKKFETAKLIKAV 145
Query: 80 KSVA 83
KSVA
Sbjct: 146 KSVA 149
>gi|168002808|ref|XP_001754105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694659|gb|EDQ81006.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 361
Score = 69.7 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 6 FLIGGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNK 65
F G N++YK + K K +E+ +VY+ IE A N+GIW D++ ++NL Q+NK
Sbjct: 133 FTQGDNIVYKEQSADVAVKFKGLSSEDMLVYQSIEAAANQGIWTADLKRRTNLQQPQINK 192
Query: 66 ILKQLETKKIIKAVKSVAN 84
LK LE + ++KAVK+V N
Sbjct: 193 ALKNLEGRSLVKAVKTVTN 211
>gi|312083987|ref|XP_003144089.1| RNA polymerase Rpc34 subunit family protein [Loa loa]
gi|307760747|gb|EFO19981.1| RNA polymerase Rpc34 subunit family protein [Loa loa]
Length = 294
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 53/72 (73%), Gaps = 2/72 (2%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83
++ D+ +EE+++Y +IEE+G KGIW+R+IR ++ L TQ+ K+LK LE +K++K++K+V
Sbjct: 76 QITDATHEEQLIYSLIEESGKKGIWIREIRDRTGLSQTQMRKVLKVLEQRKLVKSIKAVG 135
Query: 84 NIE--YLTEGTV 93
+ Y+ G V
Sbjct: 136 TTKKCYMLYGAV 147
>gi|402471876|gb|EJW05385.1| hypothetical protein EDEG_00049 [Edhazardia aedis USNM 41457]
Length = 234
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 52/76 (68%), Gaps = 8/76 (10%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
G +L+YK K S +EE+++Y++I E KG+W+RDI+ KSN+ +NKIL+
Sbjct: 51 GSSLVYK--------KPASSFDEERIIYQLIAETNGKGLWLRDIKMKSNIPQNLINKILQ 102
Query: 69 QLETKKIIKAVKSVAN 84
Q+E KKIIK++KSV N
Sbjct: 103 QMENKKIIKSIKSVKN 118
>gi|224012371|ref|XP_002294838.1| RPC6, dna-directed RNA polymerases III 39 kDa polypeptide
[Thalassiosira pseudonana CCMP1335]
gi|220969277|gb|EED87618.1| RPC6, dna-directed RNA polymerases III 39 kDa polypeptide
[Thalassiosira pseudonana CCMP1335]
Length = 237
Score = 67.4 bits (163), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 44/60 (73%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83
KL+ D + K+VY+++E AGNKGIW D+R ++N+ L KI KQLET+++IK +K+V
Sbjct: 26 KLQGLDGQAKMVYQVVEGAGNKGIWTVDVRVQTNIQQATLTKIFKQLETRRLIKPIKAVT 85
>gi|323447055|gb|EGB03019.1| hypothetical protein AURANDRAFT_34609 [Aureococcus anophagefferens]
gi|323454934|gb|EGB10803.1| hypothetical protein AURANDRAFT_77764 [Aureococcus anophagefferens]
Length = 297
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 50/72 (69%)
Query: 11 NLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQL 70
+L Y+++D EKL + NE+ +V +++E A N G+W+RDI+ +++ LNK LK L
Sbjct: 60 DLTYRLRDKAQAEKLSELTNEQLLVLQVVERAENAGVWLRDIKNATSMQQQTLNKALKVL 119
Query: 71 ETKKIIKAVKSV 82
E++K++K VKSV
Sbjct: 120 ESRKLVKTVKSV 131
>gi|145356015|ref|XP_001422238.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582478|gb|ABP00555.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 259
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 48/79 (60%)
Query: 6 FLIGGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNK 65
F GG L+Y K K E+ +VY+II+ AGN G+W ++++ +SNL Q+ K
Sbjct: 22 FGRGGGLVYARVREAQAAKFKGLSTEDMLVYQIIQHAGNAGMWTKELKQRSNLPVPQITK 81
Query: 66 ILKQLETKKIIKAVKSVAN 84
I K LE +K+IK+VK VA
Sbjct: 82 IFKTLEARKLIKSVKHVAQ 100
>gi|388582803|gb|EIM23107.1| hypothetical protein WALSEDRAFT_44075 [Wallemia sebi CBS 633.66]
Length = 528
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 51/76 (67%)
Query: 7 LIGGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKI 66
L G YK + +K K+ D++E++ Y+ I+ AGN+GIW + ++ K+NL T +N++
Sbjct: 62 LSTGGTGYKAVSKESAKKYKEMDSDEQLAYQYIDAAGNEGIWTKTLKMKTNLHQTVVNRV 121
Query: 67 LKQLETKKIIKAVKSV 82
LK LE++ IKAVKSV
Sbjct: 122 LKSLESRGSIKAVKSV 137
>gi|321463805|gb|EFX74818.1| hypothetical protein DAPPUDRAFT_324023 [Daphnia pulex]
Length = 245
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 45/60 (75%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83
KLK+ D EE VV +IIEEAGNKGI +DIR +S L T +NKILK LE K +IK+V S++
Sbjct: 20 KLKEVDKEENVVMRIIEEAGNKGILNKDIRDQSGLNLTTINKILKALEGKNLIKSVLSIS 79
>gi|422293632|gb|EKU20932.1| DNA-directed RNA polymerase III subunit RPC6 [Nannochloropsis
gaditana CCMP526]
Length = 268
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 48/65 (73%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L+Y+ DP EK+++ E+ +VY+++E+AGNKGIW +DIR +++L L KILK LE
Sbjct: 77 LVYQAVDPNLAEKMRNLGAEQLLVYQVVEKAGNKGIWHKDIRSQTSLQQPALKKILKNLE 136
Query: 72 TKKII 76
+++++
Sbjct: 137 SRQLV 141
>gi|321463822|gb|EFX74835.1| hypothetical protein DAPPUDRAFT_199715 [Daphnia pulex]
Length = 322
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 45/60 (75%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83
KLK+ D EE VV +IIEEAGNKGI +DIR +S L T +NKILK LE K +IK+V S++
Sbjct: 97 KLKEVDKEENVVMRIIEEAGNKGILNKDIRDQSGLNLTTINKILKALEGKNLIKSVLSIS 156
>gi|321463825|gb|EFX74838.1| hypothetical protein DAPPUDRAFT_56706 [Daphnia pulex]
Length = 322
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 45/60 (75%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83
KLK+ D EE VV +IIEEAGNKGI +DIR +S L T +NKILK LE K +IK+V S++
Sbjct: 97 KLKEVDKEENVVMRIIEEAGNKGILNKDIRDQSGLNLTTINKILKALEGKNLIKSVLSIS 156
>gi|255080198|ref|XP_002503679.1| RNA polymerase [Micromonas sp. RCC299]
gi|226518946|gb|ACO64937.1| RNA polymerase [Micromonas sp. RCC299]
Length = 307
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 52/76 (68%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
G ++Y++ K + +E+ +VY+II+++GN GIW ++++ +SNL Q+ KI K
Sbjct: 53 GDTIVYRMVMQEEAVKFRGLASEDLLVYQIIQQSGNSGIWTKELKQRSNLAQAQITKIFK 112
Query: 69 QLETKKIIKAVKSVAN 84
LE++K+IKAVKSV+
Sbjct: 113 SLESRKLIKAVKSVSQ 128
>gi|159485518|ref|XP_001700791.1| hypothetical protein CHLREDRAFT_155892 [Chlamydomonas reinhardtii]
gi|158281290|gb|EDP07045.1| predicted protein [Chlamydomonas reinhardtii]
Length = 285
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 47/73 (64%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ 69
G L+YK K K EE ++Y+ I+ AGN G+W +D+R ++NL Q+ KILK
Sbjct: 62 GKLVYKEVAVEEAAKFKGLSPEELLIYQCIKTAGNTGVWTKDMRIRTNLAQPQITKILKV 121
Query: 70 LETKKIIKAVKSV 82
LE +K++KAVK+V
Sbjct: 122 LEGRKLVKAVKNV 134
>gi|303272183|ref|XP_003055453.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463427|gb|EEH60705.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 294
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 51/76 (67%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
G +L+Y+ K K +E+ +VY+II+ +GN GIW ++++ KSNL TQ+ KI K
Sbjct: 53 GDSLIYREVQKDEAVKFKGLSSEDLLVYQIIQSSGNTGIWTKELKQKSNLPQTQITKIFK 112
Query: 69 QLETKKIIKAVKSVAN 84
LE +K+IK+VK+VA
Sbjct: 113 VLEARKLIKSVKNVAQ 128
>gi|239609703|gb|EEQ86690.1| DNA-directed RNA polymerase III subunit Rpc34 [Ajellomyces
dermatitidis ER-3]
gi|327355362|gb|EGE84219.1| DNA-directed RNA polymerase III subunit Rpc34 [Ajellomyces
dermatitidis ATCC 18188]
Length = 363
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 47/71 (66%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L +K+ EKL++ + EE+++Y ++E G G+W R I+ ++NL T +N+ LK LE
Sbjct: 80 LAWKIIAQSDAEKLQNLNAEERLIYSVVESTGRSGVWTRTIKSRTNLHQTIVNRCLKSLE 139
Query: 72 TKKIIKAVKSV 82
TK IK+V++V
Sbjct: 140 TKNYIKSVRNV 150
>gi|261196936|ref|XP_002624871.1| DNA-directed RNA polymerase III subunit Rpc34 [Ajellomyces
dermatitidis SLH14081]
gi|239596116|gb|EEQ78697.1| DNA-directed RNA polymerase III subunit Rpc34 [Ajellomyces
dermatitidis SLH14081]
Length = 363
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 47/71 (66%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L +K+ EKL++ + EE+++Y ++E G G+W R I+ ++NL T +N+ LK LE
Sbjct: 80 LAWKIIAQSDAEKLQNLNAEERLIYSVVESTGRSGVWTRTIKSRTNLHQTIVNRCLKSLE 139
Query: 72 TKKIIKAVKSV 82
TK IK+V++V
Sbjct: 140 TKNYIKSVRNV 150
>gi|240279468|gb|EER42973.1| RNA polymerase III subunit Rpc34 [Ajellomyces capsulatus H143]
Length = 363
Score = 63.2 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 47/71 (66%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L +K+ EKL++ + EE+++Y ++E G G+W R I+ ++NL T +N+ LK LE
Sbjct: 80 LAWKIIAQSDAEKLQNLNAEERLIYSVVESTGRSGVWTRTIKSRTNLHQTIVNRCLKSLE 139
Query: 72 TKKIIKAVKSV 82
TK IK+V++V
Sbjct: 140 TKNYIKSVRNV 150
>gi|430813513|emb|CCJ29148.1| unnamed protein product [Pneumocystis jirovecii]
Length = 322
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 54/97 (55%), Gaps = 14/97 (14%)
Query: 2 LANGFLIGGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKG--------------I 47
L + F+ G L+YK +K+ D +E +V+ I++A N+G I
Sbjct: 65 LIDAFVQGNQLIYKAVQKDEAKKISSMDGDEAMVFNYIKDASNEGYIVTIKALDLSLLGI 124
Query: 48 WMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVAN 84
W R I+ K+NL T LN+ LK LE+K++IKAVKSV N
Sbjct: 125 WSRTIKIKTNLHTTVLNRALKSLESKQLIKAVKSVKN 161
>gi|225562662|gb|EEH10941.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 363
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 47/71 (66%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L +K+ EKL++ + EE+++Y ++E G G+W R I+ ++NL T +N+ LK LE
Sbjct: 80 LAWKIIAQSDAEKLQNLNAEERLIYSVVESTGRSGVWTRTIKSRTNLHQTIVNRCLKSLE 139
Query: 72 TKKIIKAVKSV 82
TK IK+V++V
Sbjct: 140 TKNYIKSVRNV 150
>gi|325092598|gb|EGC45908.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H88]
Length = 363
Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 47/71 (66%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L +K+ EKL++ + EE+++Y ++E G G+W R I+ ++NL T +N+ LK LE
Sbjct: 80 LAWKIIAQSDAEKLQNLNAEERLIYSVVESTGRSGVWTRTIKSRTNLHQTIVNRCLKSLE 139
Query: 72 TKKIIKAVKSV 82
TK IK+V++V
Sbjct: 140 TKNYIKSVRNV 150
>gi|154279638|ref|XP_001540632.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412575|gb|EDN07962.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 363
Score = 62.8 bits (151), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 47/71 (66%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L +K+ EKL++ + EE+++Y ++E G G+W R I+ ++NL T +N+ LK LE
Sbjct: 80 LAWKIIAQSDAEKLQNLNAEERLIYSVVESTGRSGVWTRTIKSRTNLHQTIVNRCLKSLE 139
Query: 72 TKKIIKAVKSV 82
TK IK+V++V
Sbjct: 140 TKNYIKSVRNV 150
>gi|225680490|gb|EEH18774.1| DNA-directed RNA polymerase III subunit RPC6 [Paracoccidioides
brasiliensis Pb03]
gi|226292874|gb|EEH48294.1| DNA-directed RNA polymerase III subunit RPC6 [Paracoccidioides
brasiliensis Pb18]
Length = 362
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 47/71 (66%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L +K+ EKL++ + EE+++Y ++E G G+W R I+ ++NL T +N+ LK LE
Sbjct: 80 LAWKIIAQADAEKLQNLNAEERLIYSVVESTGRGGVWTRTIKTRTNLHQTIVNRSLKSLE 139
Query: 72 TKKIIKAVKSV 82
TK IK+V++V
Sbjct: 140 TKNYIKSVRNV 150
>gi|258575987|ref|XP_002542175.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237902441|gb|EEP76842.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 361
Score = 61.6 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 47/71 (66%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L +KV + EKL++ + EE++VY +I G +G+W + I+ ++NL T +N+ LK LE
Sbjct: 80 LAWKVVEQSDAEKLQNLNAEERMVYNVIHSTGRQGVWTKTIKARTNLHQTIMNRCLKSLE 139
Query: 72 TKKIIKAVKSV 82
K IK+V++V
Sbjct: 140 AKNYIKSVRNV 150
>gi|295661418|ref|XP_002791264.1| DNA-directed RNA polymerase III subunit RPC6 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226280826|gb|EEH36392.1| DNA-directed RNA polymerase III subunit RPC6 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 362
Score = 61.6 bits (148), Expect = 5e-08, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 47/71 (66%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L +K+ EKL++ + EE+++Y ++E G G+W R I+ ++NL T +N+ LK LE
Sbjct: 80 LAWKIIAQADAEKLQNLNAEERLIYSVVESTGRVGVWTRTIKTRTNLHQTIVNRSLKSLE 139
Query: 72 TKKIIKAVKSV 82
TK IK+V++V
Sbjct: 140 TKNYIKSVRNV 150
>gi|303323527|ref|XP_003071755.1| RNA polymerase Rpc34 subunit family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240111457|gb|EER29610.1| RNA polymerase Rpc34 subunit family protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 362
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 47/71 (66%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L +KV + EKL++ + EE++VY +I G +G+W + I+ ++NL T +N+ LK LE
Sbjct: 80 LAWKVVEQSDAEKLQNLNAEERLVYNVIHSTGRQGVWTKTIKARTNLHQTIMNRCLKSLE 139
Query: 72 TKKIIKAVKSV 82
K IK+V++V
Sbjct: 140 AKNYIKSVRNV 150
>gi|392867939|gb|EAS33659.2| DNA-directed RNA polymerase III subunit Rpc34 [Coccidioides immitis
RS]
Length = 362
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 47/71 (66%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L +KV + EKL++ + EE++VY +I G +G+W + I+ ++NL T +N+ LK LE
Sbjct: 80 LAWKVVEQSDAEKLQNLNAEERLVYNVIHSTGRQGVWTKTIKARTNLHQTIMNRCLKSLE 139
Query: 72 TKKIIKAVKSV 82
K IK+V++V
Sbjct: 140 AKNYIKSVRNV 150
>gi|320035104|gb|EFW17046.1| DNA-directed RNA polymerase III subunit Rpc34 [Coccidioides
posadasii str. Silveira]
Length = 362
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 28/71 (39%), Positives = 47/71 (66%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L +KV + EKL++ + EE++VY +I G +G+W + I+ ++NL T +N+ LK LE
Sbjct: 80 LAWKVVEQSDAEKLQNLNAEERLVYNVIHSTGRQGVWTKTIKARTNLHQTIMNRCLKSLE 139
Query: 72 TKKIIKAVKSV 82
K IK+V++V
Sbjct: 140 AKNYIKSVRNV 150
>gi|219115902|ref|XP_002178746.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409513|gb|EEC49444.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 330
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L Y + + D ++VY+ IE AGN GIW +D+R ++++ LNKI K LE
Sbjct: 110 LFYSLVSEDVASRFHGLDASARMVYQYIERAGNMGIWTKDLRVQTSIQQQALNKIFKTLE 169
Query: 72 TKKIIKAVKSV 82
++++IK VKSV
Sbjct: 170 SRQLIKPVKSV 180
>gi|17509641|ref|NP_491427.1| Protein W09C3.4 [Caenorhabditis elegans]
gi|20139429|sp|P91529.1|RPC6_CAEEL RecName: Full=Probable DNA-directed RNA polymerase III subunit
RPC6; Short=RNA polymerase III subunit C6; AltName:
Full=DNA-directed RNA polymerase III subunit F
gi|373218920|emb|CCD64234.1| Protein W09C3.4 [Caenorhabditis elegans]
Length = 296
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%), Gaps = 4/76 (5%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
GG L KV T+E++ ++ EE+V+Y +IEE+ +GIW++++R S L QL K LK
Sbjct: 66 GGVLRLKVN---TSEQIAGTE-EEQVIYSLIEESKTRGIWIKELREGSGLNQLQLRKTLK 121
Query: 69 QLETKKIIKAVKSVAN 84
LETKK+IK +K+V
Sbjct: 122 SLETKKLIKTIKAVGT 137
>gi|328873437|gb|EGG21804.1| RNA polymerase III subunit [Dictyostelium fasciculatum]
Length = 279
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 44/59 (74%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
K K +E ++Y+IIE++ +KG W +D+R ++NL Q+ KI+K LET+K+IKAVK++
Sbjct: 72 KFKGLSADEMLIYQIIEDSKDKGAWTKDMRGQTNLQQVQITKIIKTLETRKLIKAVKTI 130
>gi|148908665|gb|ABR17440.1| unknown [Picea sitchensis]
Length = 262
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 50/79 (63%)
Query: 6 FLIGGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNK 65
F G ++YK + + + K +E+ ++Y+ I+ AGN GIW +D++ ++NL Q+NK
Sbjct: 29 FKQGDFIVYKQQTKEESVRFKGLSSEDMLIYQAIKNAGNMGIWTKDMKRETNLQQPQVNK 88
Query: 66 ILKQLETKKIIKAVKSVAN 84
LK LE + +IK VK V+N
Sbjct: 89 ALKNLEARGLIKGVKCVSN 107
>gi|307109209|gb|EFN57447.1| hypothetical protein CHLNCDRAFT_59631 [Chlorella variabilis]
Length = 281
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 13 LYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLET 72
+YK + K E+ +VY+ I+ AGN GIW RD++ ++NL ++NKILK LE
Sbjct: 63 IYKASAVGDATRFKGLTAEDMLVYQCIQGAGNMGIWTRDMKQRTNLQQPKINKILKTLEE 122
Query: 73 KKIIKAVKSVAN 84
+ ++K++KSV N
Sbjct: 123 RCLVKSIKSVQN 134
>gi|308813722|ref|XP_003084167.1| RNA polymerase III, subunit C34 (ISS) [Ostreococcus tauri]
gi|116056050|emb|CAL58583.1| RNA polymerase III, subunit C34 (ISS) [Ostreococcus tauri]
Length = 371
Score = 60.1 bits (144), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 47/77 (61%)
Query: 6 FLIGGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNK 65
F G +L+Y K K E+ +VY+II+ AGN G+W ++++ +SNL Q+ K
Sbjct: 134 FKRGDSLVYARVREERAAKFKGLSTEDMLVYQIIQHAGNAGMWTKELKQRSNLPVPQITK 193
Query: 66 ILKQLETKKIIKAVKSV 82
I K LE +K+IKAVK V
Sbjct: 194 IFKTLEARKLIKAVKHV 210
>gi|119188853|ref|XP_001245033.1| hypothetical protein CIMG_04474 [Coccidioides immitis RS]
Length = 289
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 47/71 (66%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L +KV + EKL++ + EE++VY +I G +G+W + I+ ++NL T +N+ LK LE
Sbjct: 80 LAWKVVEQSDAEKLQNLNAEERLVYNVIHSTGRQGVWTKTIKARTNLHQTIMNRCLKSLE 139
Query: 72 TKKIIKAVKSV 82
K IK+V++V
Sbjct: 140 AKNYIKSVRNV 150
>gi|301121919|ref|XP_002908686.1| DNA-directed RNA polymerase III subunit RPC6, putative
[Phytophthora infestans T30-4]
gi|262099448|gb|EEY57500.1| DNA-directed RNA polymerase III subunit RPC6, putative
[Phytophthora infestans T30-4]
Length = 297
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 50/76 (65%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
G L Y + D E+++ E+++V + IE AGNKGIW RDI+ +N+ + K L+
Sbjct: 66 GSVLSYGIVDAEEAERIRGLTLEQRLVLQEIERAGNKGIWTRDIKSHTNIPQQIVTKTLR 125
Query: 69 QLETKKIIKAVKSVAN 84
LET++++K+VKS+++
Sbjct: 126 LLETRRLVKSVKSISS 141
>gi|348684826|gb|EGZ24641.1| hypothetical protein PHYSODRAFT_554736 [Phytophthora sojae]
Length = 301
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 10 GNLL-YKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
GN+L Y + D E+++ E+++V + IE AGNKGIW RDI+ +N+ + K L+
Sbjct: 70 GNVLSYGIVDAEEAERIRGLTLEQRLVLQEIERAGNKGIWTRDIKSHTNIPQQIVTKTLR 129
Query: 69 QLETKKIIKAVKSVAN 84
LET++++K+VKS+++
Sbjct: 130 LLETRRLVKSVKSISS 145
>gi|449666947|ref|XP_002169336.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Hydra
magnipapillata]
Length = 517
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 33/40 (82%)
Query: 44 NKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83
N GIW+RDIRFK NL TQ+NK+LK LE+KK+IK+V SV
Sbjct: 305 NSGIWIRDIRFKCNLPMTQVNKVLKNLESKKLIKSVTSVG 344
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNK 45
G LLYK KD K K + EEK++Y++IE + NK
Sbjct: 71 GTKLLYKYKDSQAASKTKGFEAEEKLIYQVIESSDNK 107
>gi|326477655|gb|EGE01665.1| DNA-directed RNA polymerase III subunit RPC6 [Trichophyton equinum
CBS 127.97]
Length = 357
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 45/71 (63%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L +K+ EKL++ + EE++VY +I G GIW + I+ ++NL T +N+ LK LE
Sbjct: 80 LAWKIIAQSDAEKLQNLNGEERLVYNVIHSTGRNGIWTKIIKTRTNLHQTIMNRCLKSLE 139
Query: 72 TKKIIKAVKSV 82
K +K+V++V
Sbjct: 140 AKNYVKSVRNV 150
>gi|302502965|ref|XP_003013443.1| hypothetical protein ARB_00261 [Arthroderma benhamiae CBS 112371]
gi|291177007|gb|EFE32803.1| hypothetical protein ARB_00261 [Arthroderma benhamiae CBS 112371]
Length = 357
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 45/71 (63%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L +K+ EKL++ + EE++VY +I G GIW + I+ ++NL T +N+ LK LE
Sbjct: 80 LAWKIIAQSDAEKLQNLNGEERLVYNVIHSTGRNGIWTKIIKTRTNLHQTIMNRCLKSLE 139
Query: 72 TKKIIKAVKSV 82
K +K+V++V
Sbjct: 140 AKNYVKSVRNV 150
>gi|327296369|ref|XP_003232879.1| DNA-directed RNA polymerase III subunit Rpc34 [Trichophyton rubrum
CBS 118892]
gi|326465190|gb|EGD90643.1| DNA-directed RNA polymerase III subunit Rpc34 [Trichophyton rubrum
CBS 118892]
Length = 357
Score = 59.7 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 45/71 (63%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L +K+ EKL++ + EE++VY +I G GIW + I+ ++NL T +N+ LK LE
Sbjct: 80 LAWKIIAQSDAEKLQNLNGEERLVYNVIHSTGRNGIWTKVIKTRTNLHQTIMNRCLKSLE 139
Query: 72 TKKIIKAVKSV 82
K +K+V++V
Sbjct: 140 AKNYVKSVRNV 150
>gi|315051752|ref|XP_003175250.1| DNA-directed RNA polymerase III subunit RPC6 [Arthroderma gypseum
CBS 118893]
gi|311340565|gb|EFQ99767.1| DNA-directed RNA polymerase III subunit RPC6 [Arthroderma gypseum
CBS 118893]
Length = 357
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 45/71 (63%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L +K+ EKL++ + EE++VY +I G GIW + I+ ++NL T +N+ LK LE
Sbjct: 80 LAWKIIAQSDAEKLQNLNGEERLVYNVIHSTGRNGIWTKIIKTRTNLHQTIMNRCLKTLE 139
Query: 72 TKKIIKAVKSV 82
K +K+V++V
Sbjct: 140 AKNYVKSVRNV 150
>gi|296810958|ref|XP_002845817.1| DNA-directed RNA polymerase III subunit RPC6 [Arthroderma otae CBS
113480]
gi|238843205|gb|EEQ32867.1| DNA-directed RNA polymerase III subunit RPC6 [Arthroderma otae CBS
113480]
Length = 358
Score = 59.3 bits (142), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 45/71 (63%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L +K+ EKL++ + EE++VY +I G GIW + I+ ++NL T +N+ LK LE
Sbjct: 80 LAWKIIAQSDAEKLQNLNGEERLVYNVIHSTGRNGIWTKIIKTRTNLHQTIMNRCLKSLE 139
Query: 72 TKKIIKAVKSV 82
K +K+V++V
Sbjct: 140 AKNYVKSVRNV 150
>gi|341883104|gb|EGT39039.1| hypothetical protein CAEBREN_20869 [Caenorhabditis brenneri]
Length = 296
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 51/76 (67%), Gaps = 4/76 (5%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
GG L KV T++++ ++ EE+V+Y +IEE+ +GIW++++R S L QL K LK
Sbjct: 66 GGVLRLKVN---TSQQIAGTE-EEQVIYGLIEESKTRGIWIKELRDGSGLNQLQLRKTLK 121
Query: 69 QLETKKIIKAVKSVAN 84
LETKK+IK +K+V
Sbjct: 122 SLETKKLIKTIKAVGT 137
>gi|324511218|gb|ADY44675.1| DNA-directed RNA polymerase III subunit RPC6 [Ascaris suum]
Length = 183
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 43/61 (70%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83
++ D+ EE+++Y +IEE+ GIW+R+IR ++ L Q+ K LK LE +K++K+VK+V
Sbjct: 76 QITDASAEEQLIYSLIEESNKMGIWIREIRSRTGLPQAQVRKALKVLEQRKLVKSVKAVG 135
Query: 84 N 84
Sbjct: 136 T 136
>gi|308497993|ref|XP_003111183.1| hypothetical protein CRE_03668 [Caenorhabditis remanei]
gi|308240731|gb|EFO84683.1| hypothetical protein CRE_03668 [Caenorhabditis remanei]
Length = 296
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 51/76 (67%), Gaps = 4/76 (5%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
GG L KV T++++ ++ EE+V+Y +IEE+ +GIW++++R S L QL K LK
Sbjct: 66 GGLLRLKVN---TSQQIAGTE-EEQVIYGLIEESKTRGIWIKELRDGSGLNQLQLRKTLK 121
Query: 69 QLETKKIIKAVKSVAN 84
LETKK+IK +K+V
Sbjct: 122 SLETKKLIKTIKAVGT 137
>gi|397640426|gb|EJK74113.1| hypothetical protein THAOC_04229 [Thalassiosira oceanica]
Length = 301
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 41/59 (69%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
KL D + K+VY+++E +GNKGIW D+R ++ + + L KI K LE +++IK +KSV
Sbjct: 121 KLLGLDGQAKMVYQVVEASGNKGIWTVDVRSQTGIPQSNLAKIFKALENRRLIKPIKSV 179
>gi|281202585|gb|EFA76787.1| RNA polymerase III subunit [Polysphondylium pallidum PN500]
Length = 301
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 42/52 (80%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
++ +VY++IE++ +KG W ++IR ++NL TQ+ KILK LET+ +IKAVK++
Sbjct: 79 DDMLVYQLIEQSNDKGTWTKEIRTQTNLQQTQVTKILKVLETRNLIKAVKTI 130
>gi|384251133|gb|EIE24611.1| RNA polymerase Rpc34 [Coccomyxa subellipsoidea C-169]
Length = 275
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 43/61 (70%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83
KLK E+ +VY+ I +AG+ GIW +D++ ++NL Q+ KILK L+ + ++K+VKSV
Sbjct: 70 KLKGLSAEDLLVYQHIAQAGDTGIWTKDLKNRTNLQQPQITKILKNLDQRSLVKSVKSVI 129
Query: 84 N 84
N
Sbjct: 130 N 130
>gi|123487163|ref|XP_001324886.1| RNA polymerase Rpc34 subunit family protein [Trichomonas vaginalis
G3]
gi|121907776|gb|EAY12663.1| RNA polymerase Rpc34 subunit family protein [Trichomonas vaginalis
G3]
Length = 285
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 14 YKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK 73
YK P E D++ +Y +I++AGNKGIW RDIR L+ +LK+LET+
Sbjct: 73 YKAVPPKLQESFIGLDDDHHRIYDLIDKAGNKGIWRRDIRKAGGCADKTLSNVLKELETR 132
Query: 74 KIIKAVKSV 82
+IK++ S+
Sbjct: 133 CLIKSITSI 141
>gi|296422853|ref|XP_002840973.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637200|emb|CAZ85164.1| unnamed protein product [Tuber melanosporum]
Length = 303
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 43/60 (71%)
Query: 23 EKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
EK+K+ +E+++Y I+E+ +GIW + ++ KSN+ T +NK LK LE KK IK++KSV
Sbjct: 81 EKVKNMTPDEELLYGYIQESAREGIWTKQLKIKSNMHSTAVNKALKGLERKKFIKSIKSV 140
>gi|378754947|gb|EHY64975.1| hypothetical protein NERG_02031 [Nematocida sp. 1 ERTm2]
Length = 231
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 40/55 (72%)
Query: 28 SDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
S EEK++Y +I+E+G GIW++DIR KS L + KILK LE + +IKAVKS+
Sbjct: 66 SAPEEKIIYLLIKESGVDGIWIKDIRSKSGLHQNLVTKILKTLEQRVLIKAVKSI 120
>gi|268564211|ref|XP_002639044.1| Hypothetical protein CBG22296 [Caenorhabditis briggsae]
Length = 296
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 52/76 (68%), Gaps = 4/76 (5%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
GG L KV +++++ ++ EE+ +Y +IEE+ N+GIW++++R + L QL K LK
Sbjct: 66 GGVLRVKVN---SSQQIAGTE-EEQAIYTLIEESKNRGIWIKELREGTGLNQLQLRKTLK 121
Query: 69 QLETKKIIKAVKSVAN 84
LETKK+IK +K+V +
Sbjct: 122 SLETKKLIKTIKAVGS 137
>gi|395507808|ref|XP_003758211.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6
[Sarcophilus harrisii]
Length = 255
Score = 57.8 bits (138), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 33/37 (89%)
Query: 47 IWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83
IW RDIR+KSNL T++NKILK LE+KK+IKAVKSVA
Sbjct: 46 IWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVA 82
>gi|398408736|ref|XP_003855833.1| hypothetical protein MYCGRDRAFT_64857 [Zymoseptoria tritici IPO323]
gi|339475718|gb|EGP90809.1| hypothetical protein MYCGRDRAFT_64857 [Zymoseptoria tritici IPO323]
Length = 349
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%)
Query: 8 IGGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKIL 67
+GG L + V+ ++ + D +EK +Y+IIEEA GIW RD++ K+++ + K L
Sbjct: 76 VGGKLGWSVRPREAARQIVNLDRDEKTIYEIIEEAHTTGIWTRDLKKKTSIAQNVVQKAL 135
Query: 68 KQLETKKIIKAVKSV 82
++E +IK+VKSV
Sbjct: 136 SKMEKGNLIKSVKSV 150
>gi|326473190|gb|EGD97199.1| DNA-directed RNA polymerase III subunit Rpc34 [Trichophyton
tonsurans CBS 112818]
Length = 348
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L +K+ EKL++ + EE++VY +I G GIW + I+ ++NL T +N+ LK LE
Sbjct: 80 LAWKIIAQSDAEKLQNLNGEERLVYNVIHSTGRNGIWTKIIKTRTNLHQTIMNRCLKSLE 139
Query: 72 TKKIIKAVKSV 82
K +K+V++V
Sbjct: 140 AKNYVKSVRNV 150
>gi|345565560|gb|EGX48509.1| hypothetical protein AOL_s00080g138 [Arthrobotrys oligospora ATCC
24927]
Length = 300
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Query: 1 MLANGFL----IGGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKS 56
+L G+L G +YK ++ ++ +E +VY+ IE A +GIW + ++ ++
Sbjct: 47 LLGRGYLRTLKQGDAYVYKFVSKDEVDRTRNLTPDEALVYQHIESAAREGIWSKTLKART 106
Query: 57 NLMPTQLNKILKQLETKKIIKAVKSV 82
NL PT L + LK LET + IK++KSV
Sbjct: 107 NLHPTVLTRCLKTLETHRYIKSIKSV 132
>gi|403161593|ref|XP_003321906.2| hypothetical protein PGTG_03443 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375171846|gb|EFP77487.2| hypothetical protein PGTG_03443 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 525
Score = 57.0 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 1 MLANGFL----IGGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKS 56
++A G L + L Y D + +EK+VY I AGN GIW + ++ ++
Sbjct: 83 LIARGMLQVKRVQDELFYIAVDKSQQKVNSSMSTDEKLVYDNISNAGNTGIWTKTLKMRT 142
Query: 57 NLMPTQLNKILKQLETKKIIKAVKSV 82
N+ T L K +K LE K +IKAVKSV
Sbjct: 143 NIHQTNLTKCIKALENKNLIKAVKSV 168
>gi|325190908|emb|CCA25394.1| DNAdirected RNA polymerase III subunit RPC6 putative [Albugo
laibachii Nc14]
gi|325190983|emb|CCA25467.1| DNAdirected RNA polymerase III subunit RPC6 putative [Albugo
laibachii Nc14]
Length = 312
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 4/83 (4%)
Query: 6 FLIGGNLLYKVKDPVTNEKLKD----SDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPT 61
F G ++ Y + E+L+ + E++VV IE AGNKGIW RDI+ +SN+
Sbjct: 57 FQKGASISYAIVAQEEAERLRGLTFANSVEQRVVLSEIERAGNKGIWTRDIKMQSNIAQQ 116
Query: 62 QLNKILKQLETKKIIKAVKSVAN 84
+ K L+ LE++++IK+VKS+++
Sbjct: 117 VVVKTLRLLESRQLIKSVKSISS 139
>gi|299473570|emb|CBN77965.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 300
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%)
Query: 11 NLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQL 70
+ YK+ +KL E+ ++Y++IE+AGNKGIW RDI+ +N+ + K LK L
Sbjct: 67 TMWYKLVQEEKAKKLMGLTPEQMMIYQVIEKAGNKGIWTRDIKTATNVNQNTMTKTLKSL 126
Query: 71 ETKKIIKAVKSVAN 84
E + ++K KSV +
Sbjct: 127 EGRHLVKTAKSVTS 140
>gi|449546101|gb|EMD37071.1| hypothetical protein CERSUDRAFT_155527 [Ceriporiopsis subvermispora
B]
Length = 481
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 11/88 (12%)
Query: 6 FLIGGNLLYKVKDP--------VTNEKL---KDSDNEEKVVYKIIEEAGNKGIWMRDIRF 54
FL+G LL +KD V ++L KD +EE +V I+ AGN+GIW + ++
Sbjct: 45 FLLGTGLLKPLKDAKGQLSFRAVQKKELELKKDLTDEESLVLSYIQSAGNEGIWTKHLKA 104
Query: 55 KSNLMPTQLNKILKQLETKKIIKAVKSV 82
K+ L T +++ LK L K++IKAVKSV
Sbjct: 105 KTELHQTVIDRSLKSLTQKQLIKAVKSV 132
>gi|330802412|ref|XP_003289211.1| hypothetical protein DICPUDRAFT_88404 [Dictyostelium purpureum]
gi|325080698|gb|EGC34242.1| hypothetical protein DICPUDRAFT_88404 [Dictyostelium purpureum]
Length = 293
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%)
Query: 14 YKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK 73
Y+ +P K + E+ ++Y++IE +GN G W R+++ +S Q+ KILK LE +
Sbjct: 61 YREVNPEDQMKFRGLGAEDFLIYQLIETSGNNGAWTRELKQQSGYQQVQITKILKILENR 120
Query: 74 KIIKAVKSVAN 84
K+IKAVKS+ +
Sbjct: 121 KLIKAVKSIQS 131
>gi|358374565|dbj|GAA91156.1| DNA-directed RNA polymerase III subunit Rpc34 [Aspergillus kawachii
IFO 4308]
Length = 355
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/71 (40%), Positives = 43/71 (60%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L +K+ EKL+D +E +VY +I G GIW+R I ++NL + L++ LK LE
Sbjct: 74 LAWKIISRDDAEKLRDLSPDESLVYNVIHSTGRSGIWVRAIGNRTNLHKSILDRCLKSLE 133
Query: 72 TKKIIKAVKSV 82
TK IK+V +V
Sbjct: 134 TKSYIKSVHNV 144
>gi|167533399|ref|XP_001748379.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773191|gb|EDQ86834.1| predicted protein [Monosiga brevicollis MX1]
Length = 412
Score = 56.6 bits (135), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 43/59 (72%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
KL +E+++Y IIE+AG KG++ +D++ KS+L P +NKI+K+L+++K IK S+
Sbjct: 121 KLSKLSTQEQLIYGIIEDAGTKGVFHQDLKPKSHLDPRTINKIIKRLKSEKYIKEASSI 179
>gi|213407148|ref|XP_002174345.1| DNA-directed RNA polymerase III subunit RPC6 [Schizosaccharomyces
japonicus yFS275]
gi|212002392|gb|EEB08052.1| DNA-directed RNA polymerase III subunit RPC6 [Schizosaccharomyces
japonicus yFS275]
Length = 301
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 41/54 (75%)
Query: 29 DNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
+ +E++VY I+ +GN+GIW + ++ K+NL T +N+ LK LE+K ++K++KSV
Sbjct: 84 EGDEQIVYNFIKGSGNEGIWTKTLKMKTNLHMTVVNRCLKSLESKNLVKSIKSV 137
>gi|328769882|gb|EGF79925.1| hypothetical protein BATDEDRAFT_12133 [Batrachochytrium
dendrobatidis JAM81]
Length = 233
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 41/55 (74%), Gaps = 1/55 (1%)
Query: 28 SDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
SDNE ++VY+ I+ +GNKG W++DI+ KS L + +++K LE K +IKAVKSV
Sbjct: 13 SDNE-RIVYQFIKASGNKGTWIKDIKVKSGLHAQIVTQMIKNLEKKVLIKAVKSV 66
>gi|395329460|gb|EJF61847.1| hypothetical protein DICSQDRAFT_105558 [Dichomitus squalens
LYAD-421 SS1]
Length = 517
Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 11/93 (11%)
Query: 1 MLANGFLIGGNLLYKVKDP--------VTNEKL---KDSDNEEKVVYKIIEEAGNKGIWM 49
+ A FL+G L ++D VT ++L KD EE ++ I+ +GN+GIW
Sbjct: 43 LAATNFLLGTGLWKALRDSSGALTYRVVTKKELEVKKDMSGEEGMILSYIQASGNEGIWT 102
Query: 50 RDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
+ ++ K+ L T +++ LK L K++IKAVKSV
Sbjct: 103 KHLKAKTELHQTVIDRCLKSLVQKQLIKAVKSV 135
>gi|390605124|gb|EIN14515.1| RNA polymerase Rpc34 [Punctularia strigosozonata HHB-11173 SS5]
Length = 242
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%)
Query: 23 EKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
E+ KD EE +V I+ AGN+GIW + I+ K+ L T +++ LK L K++IK++KSV
Sbjct: 79 EQCKDMSGEESMVLSHIQAAGNEGIWTKHIKAKTELHQTVIDRCLKSLTQKQLIKSIKSV 138
Query: 83 AN 84
+
Sbjct: 139 KH 140
>gi|387592799|gb|EIJ87823.1| hypothetical protein NEQG_01895 [Nematocida parisii ERTm3]
gi|387595420|gb|EIJ93044.1| hypothetical protein NEPG_02000 [Nematocida parisii ERTm1]
Length = 230
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 40/55 (72%)
Query: 28 SDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
S EEK++Y +I+E G +GIW++DIR KS L + K+LK LE + +IK+VKS+
Sbjct: 66 STPEEKIIYLLIKEVGVEGIWIKDIRTKSGLHQNLVTKLLKTLEQRLLIKSVKSI 120
>gi|384496643|gb|EIE87134.1| hypothetical protein RO3G_11845 [Rhizopus delemar RA 99-880]
Length = 296
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 39/60 (65%)
Query: 23 EKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
EK +++ ++VY I AGN GIW +D++ +NL LN+ LKQLE K+ IKAVK V
Sbjct: 79 EKASKLNDDARLVYNTIRAAGNNGIWTKDLKKTTNLHTIVLNRTLKQLEQKQEIKAVKHV 138
>gi|443894276|dbj|GAC71625.1| RNA polymerase III, subunit C34 [Pseudozyma antarctica T-34]
Length = 516
Score = 54.7 bits (130), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 8 IGGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKIL 67
+ G++ Y + D E +VY+ I+++ N+GIW + ++ +S L T +N+ L
Sbjct: 69 LNGSIQYAATAKAEASMMGKLDETENMVYQHIKDSRNEGIWTKQLKARSGLHQTIINRCL 128
Query: 68 KQLETKKIIKAVKSV 82
K LE K+++KAVKSV
Sbjct: 129 KSLEQKQLVKAVKSV 143
>gi|300123760|emb|CBK25032.2| unnamed protein product [Blastocystis hominis]
Length = 170
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 46/62 (74%), Gaps = 3/62 (4%)
Query: 23 EKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
EKL + D +VY+ IE AG++GIW+RDI+ +++L + +N+ ++++ +K+IK+ KS+
Sbjct: 56 EKLGEQD---MIVYQCIEAAGDQGIWIRDIKVQTSLHASAINRAIEKMVKRKLIKSFKSI 112
Query: 83 AN 84
A+
Sbjct: 113 AS 114
>gi|328849993|gb|EGF99164.1| hypothetical protein MELLADRAFT_94867 [Melampsora larici-populina
98AG31]
Length = 511
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 1 MLANGFL----IGGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKS 56
++A G L + L Y D + +EK+VY I +GN G+W + ++ ++
Sbjct: 80 LIARGMLQVKRLQDELFYTAVDKTQQRANSNMTADEKLVYDSIASSGNTGMWTKTLKART 139
Query: 57 NLMPTQLNKILKQLETKKIIKAVKSV 82
N+ + +NK LK LE K +IK+VKSV
Sbjct: 140 NIHQSNINKFLKSLENKNLIKSVKSV 165
>gi|66824061|ref|XP_645385.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|74861297|sp|Q86JM3.1|RPC6_DICDI RecName: Full=DNA-directed RNA polymerase III subunit rpc6;
Short=RNA polymerase III subunit C6; AltName:
Full=DNA-directed RNA polymerase III subunit F
gi|60473501|gb|EAL71445.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
Length = 293
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%)
Query: 14 YKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK 73
YK +P K + E+ ++Y++IE + N G W R+++ S Q+ KILK LE++
Sbjct: 61 YKEVNPEDQAKFRGLGVEDFLIYQLIEASSNTGAWTRELKNSSGYQQVQITKILKTLESR 120
Query: 74 KIIKAVKSVAN 84
K+IK+VKS+ +
Sbjct: 121 KLIKSVKSIQS 131
>gi|358058137|dbj|GAA96023.1| hypothetical protein E5Q_02683 [Mixia osmundae IAM 14324]
Length = 595
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 36/52 (69%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
E K+VY I AGN GIW + ++ K+NL T ++++LKQLE K +K VKSV
Sbjct: 146 ENKLVYDTIRAAGNVGIWTKTLKTKTNLHQTVISRVLKQLEKDKQVKCVKSV 197
>gi|343428974|emb|CBQ72519.1| related to RPC34-DNA-directed RNA polymerase III, 34 KD subunit
[Sporisorium reilianum SRZ2]
Length = 369
Score = 54.3 bits (129), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 8 IGGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKIL 67
+ G++ Y + D E +VY I++A N+GIW + ++ ++ L T +N+ L
Sbjct: 72 LNGSIQYAATAKAEASMMGKLDENETLVYSHIKDARNEGIWTKQLKARTGLHQTIINRCL 131
Query: 68 KQLETKKIIKAVKSV 82
K LE K+++KAVKSV
Sbjct: 132 KSLEQKQLVKAVKSV 146
>gi|260940459|ref|XP_002614529.1| hypothetical protein CLUG_05307 [Clavispora lusitaniae ATCC 42720]
gi|238851715|gb|EEQ41179.1| hypothetical protein CLUG_05307 [Clavispora lusitaniae ATCC 42720]
Length = 322
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 48/77 (62%)
Query: 8 IGGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKIL 67
+G L ++V KL +++E+++Y IE +G +GIW + ++ K+N+ + + L
Sbjct: 58 VGEELRFQVIQASETRKLTSMNDDEQLIYSYIEASGREGIWTKTLKAKTNMHQHVVMRCL 117
Query: 68 KQLETKKIIKAVKSVAN 84
KQLE ++ IK++KSV +
Sbjct: 118 KQLEGQRYIKSIKSVKH 134
>gi|317033273|ref|XP_001395167.2| DNA-directed RNA polymerase III subunit Rpc34 [Aspergillus niger
CBS 513.88]
gi|350637586|gb|EHA25943.1| hypothetical protein ASPNIDRAFT_190142 [Aspergillus niger ATCC
1015]
Length = 356
Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L +K+ EKL+D +E +VY +I G GIW+R I ++NL + L++ LK LE
Sbjct: 74 LAWKIISRDDAEKLRDLSPDESLVYNVIHSTGRSGIWVRAIGNRTNLHKSILDRCLKSLE 133
Query: 72 TKKIIKAVKSV 82
++ IK+V +V
Sbjct: 134 SRSYIKSVHNV 144
>gi|385303565|gb|EIF47629.1| rna polymerase iii subunit c34 [Dekkera bruxellensis AWRI1499]
Length = 321
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 23 EKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
+K+ N+E +VY IE AG +GIW + ++ K+NL + + LK LE++ IKAVKSV
Sbjct: 48 QKVSGMSNDEAMVYSYIEAAGREGIWTKTLKVKTNLHQHVVLRCLKSLESQSYIKAVKSV 107
Query: 83 AN 84
+
Sbjct: 108 KH 109
>gi|299747323|ref|XP_001836956.2| RNA polymerase III subunit Rpc34 [Coprinopsis cinerea okayama7#130]
gi|298407467|gb|EAU84573.2| RNA polymerase III subunit Rpc34 [Coprinopsis cinerea okayama7#130]
Length = 478
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 14/110 (12%)
Query: 3 ANGFLIGGNLLYKVKDPVTN-----------EKLKDSDNEEKVVYKIIEEAGNKGIWMRD 51
A FL+G L +KDP N KD EE +V I+ +GN+GIW +
Sbjct: 45 ALNFLLGVGLFKSLKDPKGNLLFRAVSKGELVATKDLSGEENLVLSHIKNSGNEGIWTKH 104
Query: 52 IRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIE---YLTEGTVNAMVL 98
++ K+NL T +++ LK L K++IK V SV + Y+ EG ++ L
Sbjct: 105 LKAKTNLHQTIIDRCLKTLIQKRLIKRVPSVQHPTRKIYMLEGLEPSIAL 154
>gi|378730779|gb|EHY57238.1| DNA-directed RNA polymerase III subunit C34 [Exophiala dermatitidis
NIH/UT8656]
Length = 453
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 45/76 (59%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
GG + +++ D + +EK+V I++ AG G+W + I+F+S+L L+++ K
Sbjct: 80 GGTIGWELVDQEKAKNYTGLTRDEKIVLFIVDAAGTAGVWTKTIKFRSSLHGRVLDRVYK 139
Query: 69 QLETKKIIKAVKSVAN 84
LETK +IK +K V N
Sbjct: 140 SLETKGLIKPMKHVKN 155
>gi|190345971|gb|EDK37952.2| hypothetical protein PGUG_02050 [Meyerozyma guilliermondii ATCC
6260]
Length = 306
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
GG L ++ V K ++E ++Y IE +G +GIW + I+ K+NL + + LK
Sbjct: 60 GGELRFQAISIVEASKFTSMSDDEAMIYSYIEASGREGIWTKTIKAKTNLHQHIVARCLK 119
Query: 69 QLETKKIIKAVKSV 82
LE ++ IK++KSV
Sbjct: 120 SLENQRYIKSIKSV 133
>gi|146420852|ref|XP_001486379.1| hypothetical protein PGUG_02050 [Meyerozyma guilliermondii ATCC
6260]
Length = 306
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
GG L ++ V K ++E ++Y IE +G +GIW + I+ K+NL + + LK
Sbjct: 60 GGELRFQAISIVEASKFTSMSDDEAMIYSYIEASGREGIWTKTIKAKTNLHQHIVARCLK 119
Query: 69 QLETKKIIKAVKSV 82
LE ++ IK++KSV
Sbjct: 120 SLENQRYIKSIKSV 133
>gi|320591601|gb|EFX04040.1| DNA-directed RNA polymerase 3 subunit [Grosmannia clavigera kw1407]
Length = 453
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L ++ + V K K + ++ +VY++I++AG GIW R ++ + N+ + L + +K LE
Sbjct: 77 LCWRYRPAVDAAKYKQLNQDQIMVYELIDDAGADGIWARSLKHRLNMHDSVLKQCIKHLE 136
Query: 72 TKKIIKAVKSVANI 85
K I+ +KSV NI
Sbjct: 137 VKGYIRDMKSVENI 150
>gi|342321651|gb|EGU13583.1| Hypothetical Protein RTG_00013 [Rhodotorula glutinis ATCC 204091]
Length = 581
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 42/73 (57%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ 69
G +L++ + + D+EEK+V I+EAGN GIW R + K+ L + K LK
Sbjct: 81 GQILFRFMGKEEAKAMSSMDSEEKLVLDHIKEAGNMGIWSRTLNAKTGLPRATVEKALKV 140
Query: 70 LETKKIIKAVKSV 82
LE +K IK VKSV
Sbjct: 141 LEGRKTIKRVKSV 153
>gi|424513015|emb|CCO66599.1| DNA-directed RNA polymerase III subunit RPC6 [Bathycoccus prasinos]
Length = 463
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 40/54 (74%)
Query: 30 NEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83
+E+++V ++IE AGN G+W ++++ K+N ++ KI K LE +K+IK+VK VA
Sbjct: 120 SEDRLVLQVIETAGNSGMWTKEVKQKTNFPQVKVTKIFKTLEQRKLIKSVKHVA 173
>gi|302652784|ref|XP_003018234.1| hypothetical protein TRV_07755 [Trichophyton verrucosum HKI 0517]
gi|291181855|gb|EFE37589.1| hypothetical protein TRV_07755 [Trichophyton verrucosum HKI 0517]
Length = 365
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 38/58 (65%)
Query: 25 LKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
+ + + EE++VY +I G GIW + I+ ++NL T +N+ LK LE K +K+V++V
Sbjct: 101 INNLNGEERLVYNVIHSTGRNGIWTKIIKTRTNLHQTIMNRCLKSLEAKNYVKSVRNV 158
>gi|19075898|ref|NP_588398.1| DNA-directed RNA polymerase III complex subunit Rpc34 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|9297041|sp|O94553.1|RPC6_SCHPO RecName: Full=Probable DNA-directed RNA polymerase III subunit
rpc6; Short=RNA polymerase III subunit C6; AltName:
Full=DNA-directed RNA polymerase III 34 kDa polypeptide;
AltName: Full=RNA polymerase III subunit C34
gi|4176538|emb|CAA22872.1| DNA-directed RNA polymerase III complex subunit Rpc34 (predicted)
[Schizosaccharomyces pombe]
gi|76782161|gb|ABA54851.1| RNA polymerase III subunit Rpc34 [Schizosaccharomyces pombe]
Length = 301
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 40/54 (74%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVAN 84
+E++VY I+ +GN+GIW + + ++NL + +++ LK LE+K ++K++KSV N
Sbjct: 86 DEQIVYSFIKNSGNEGIWRKTLTLRTNLHVSVVDRCLKSLESKNLVKSIKSVKN 139
>gi|320581571|gb|EFW95791.1| RNA polymerase III subunit C34 [Ogataea parapolymorpha DL-1]
Length = 326
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Query: 19 PVTNE---KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKI 75
P+T K+ + ++E +VY IE AG +GIW + I+ K+NL + + LK LE++
Sbjct: 80 PITEAEAVKINNMSSDEAMVYSYIEAAGREGIWTKTIKAKTNLHQHVVQRCLKSLESQSY 139
Query: 76 IKAVKSV 82
IK+VKSV
Sbjct: 140 IKSVKSV 146
>gi|154320538|ref|XP_001559585.1| hypothetical protein BC1G_01741 [Botryotinia fuckeliana B05.10]
gi|347838876|emb|CCD53448.1| similar to DNA-directed RNA polymerase III subunit Rpc34
[Botryotinia fuckeliana]
Length = 370
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 14 YKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK 73
+K++ + + +E+++VY +I+EAG +GIW + I+ +SNL LK LETK
Sbjct: 81 WKLRTQEEAKNYRSLSSEQEIVYALIDEAGQEGIWTKTIKARSNLHDAVFRTALKHLETK 140
Query: 74 KIIKAVKSV 82
+I +KSV
Sbjct: 141 HLISEMKSV 149
>gi|401827607|ref|XP_003888096.1| DNA-directed RNA polymerase III subunit C34 [Encephalitozoon hellem
ATCC 50504]
gi|392999296|gb|AFM99115.1| DNA-directed RNA polymerase III subunit C34 [Encephalitozoon hellem
ATCC 50504]
Length = 236
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 47/73 (64%), Gaps = 6/73 (8%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
+LY PV + DN E +Y ++ ++GN+G+W++ I+ K+N+ + K+L+ +E
Sbjct: 54 VLYYKPSPV------NVDNYELTIYNLVSQSGNEGVWLKVIKDKTNMPHNLIGKVLRTME 107
Query: 72 TKKIIKAVKSVAN 84
+K+IIK+VK + N
Sbjct: 108 SKRIIKSVKCLKN 120
>gi|70982438|ref|XP_746747.1| DNA-directed RNA polymerase III subunit Rpc34 [Aspergillus
fumigatus Af293]
gi|66844371|gb|EAL84709.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Aspergillus fumigatus Af293]
gi|159123012|gb|EDP48132.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Aspergillus fumigatus A1163]
Length = 352
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L +K+ EKL++ +E +VY +I G GIW+R I+ ++NL + L++ LK LE
Sbjct: 74 LAWKIISREDAEKLQNLSPDESLVYNVIHSTGRNGIWVRAIQSRTNLHKSILDRCLKSLE 133
Query: 72 TKKIIKAVKSV 82
K IK+V +V
Sbjct: 134 GKSYIKSVHNV 144
>gi|384493398|gb|EIE83889.1| hypothetical protein RO3G_08594 [Rhizopus delemar RA 99-880]
Length = 304
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%)
Query: 15 KVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKK 74
K D EK +++ ++VY I +GN GIW +D++ +NL LN+ LKQLE K+
Sbjct: 67 KAIDLTDAEKASKLNDDARLVYNAIRSSGNTGIWTKDLKKATNLHTIVLNRTLKQLEQKR 126
Query: 75 IIKAVKSV 82
IK+VK V
Sbjct: 127 EIKSVKHV 134
>gi|156054874|ref|XP_001593363.1| hypothetical protein SS1G_06285 [Sclerotinia sclerotiorum 1980]
gi|154704065|gb|EDO03804.1| hypothetical protein SS1G_06285 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 370
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 14 YKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK 73
+K++ + + +E+++VY +I+EA +GIW + I+ +SNL LK LETK
Sbjct: 81 WKLRTQEEAKNYRSLSSEQEIVYALIDEAAEEGIWTKTIKARSNLHDAVFRTALKHLETK 140
Query: 74 KIIKAVKSVAN 84
+I +KSV N
Sbjct: 141 HLISEMKSVEN 151
>gi|388857894|emb|CCF48559.1| related to RPC34-DNA-directed RNA polymerase III, 34 KD subunit
[Ustilago hordei]
Length = 533
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 39/54 (72%)
Query: 29 DNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
D E +VY+ I+++ N+GIW + ++ ++ L T +N+ LK LE K+++KAVKSV
Sbjct: 92 DENETMVYQHIKDSRNEGIWTKQLKVRTGLHQTIINRCLKSLEQKQLVKAVKSV 145
>gi|119489044|ref|XP_001262822.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Neosartorya fischeri NRRL 181]
gi|119410980|gb|EAW20925.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Neosartorya fischeri NRRL 181]
Length = 352
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L +K+ EKL++ +E +VY +I G GIW+R I+ ++NL + L++ LK LE
Sbjct: 74 LAWKIISREDAEKLQNLSPDESLVYNVIHSTGRNGIWVRAIQNRTNLHKSILDRCLKSLE 133
Query: 72 TKKIIKAVKSV 82
K IK+V +V
Sbjct: 134 GKSYIKSVHNV 144
>gi|269860596|ref|XP_002650018.1| DNA-directed RNA polymerase III, subunit 14 [Enterocytozoon
bieneusi H348]
gi|220066569|gb|EED44046.1| DNA-directed RNA polymerase III, subunit 14 [Enterocytozoon
bieneusi H348]
Length = 240
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 42/59 (71%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
K D N E ++ ++E++G KG+W++DIR K+N+ L KILK+LE +++IK+VK +
Sbjct: 61 KFIDQSNYENLILSLLEKSGPKGLWIKDIRIKANIPYNFLVKILKKLEQEQLIKSVKGI 119
>gi|50306581|ref|XP_453264.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642398|emb|CAH00360.1| KLLA0D04532p [Kluyveromyces lactis]
Length = 363
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L ++ D EK ++E +VY IE +G +GIW + I+ K+NL + K LK LE
Sbjct: 121 LKFQAVDAAEAEKKSGMSSDEALVYSYIEASGREGIWTKTIKAKTNLHQHVVLKCLKSLE 180
Query: 72 TKKIIKAVKSV 82
+++ +K+VKSV
Sbjct: 181 SQRYVKSVKSV 191
>gi|67904276|ref|XP_682394.1| hypothetical protein AN9125.2 [Aspergillus nidulans FGSC A4]
gi|40742768|gb|EAA61958.1| hypothetical protein AN9125.2 [Aspergillus nidulans FGSC A4]
gi|259485459|tpe|CBF82499.1| TPA: DNA-directed RNA polymerase III subunit Rpc34, putative
(AFU_orthologue; AFUA_7G01850) [Aspergillus nidulans
FGSC A4]
Length = 359
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 23 EKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
EKL++ +E +VY +I G GIW+R I+ ++NL + L++ LK LE K IK+V +V
Sbjct: 85 EKLQNLSPDESLVYNVIHSTGRSGIWVRAIQNRTNLHKSILDRCLKSLEGKNYIKSVHNV 144
>gi|402221227|gb|EJU01296.1| hypothetical protein DACRYDRAFT_52685 [Dacryopinax sp. DJM-731 SS1]
Length = 503
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 38/52 (73%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
+E +VY I +G +GIW + ++ K+NL T +N+ LKQLE ++++K+VK+V
Sbjct: 89 DESMVYTHIRNSGTEGIWTKSLKAKTNLHATVINRCLKQLEQRQLVKSVKNV 140
>gi|71024497|ref|XP_762478.1| hypothetical protein UM06331.1 [Ustilago maydis 521]
gi|46097727|gb|EAK82960.1| hypothetical protein UM06331.1 [Ustilago maydis 521]
Length = 540
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 38/54 (70%)
Query: 29 DNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
D E +VY I+++ N+GIW + ++ ++ L T +N+ LK LE K+++KAVKSV
Sbjct: 94 DENETLVYSHIKDSRNEGIWTKQLKARTGLHQTIINRCLKSLEQKQLVKAVKSV 147
>gi|396082216|gb|AFN83826.1| DNA-directed RNA polymerase III subunit C34 [Encephalitozoon
romaleae SJ-2008]
Length = 235
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 41/56 (73%)
Query: 29 DNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVAN 84
D+ E +Y ++ ++GN+G+W++ I+ K+N+ + K+L+ +E+K+IIK+VK + N
Sbjct: 64 DDYELTIYNLVSQSGNEGVWLKVIKDKTNMPHNLIGKVLRSMESKRIIKSVKCLKN 119
>gi|294948682|ref|XP_002785842.1| DNA-directed RNA polymerases iii 39 Kd polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239899950|gb|EER17638.1| DNA-directed RNA polymerases iii 39 Kd polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 316
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNL----MPTQLN 64
G LLY +KL+ D +++YK+I+ AG +GIW +D+ ++N+ +
Sbjct: 56 AGKLLYTAVPAEIAQKLRGLDQTFRMIYKLIKMAGTQGIWNKDLATRANMEHRIASGSVT 115
Query: 65 KILKQLETKKIIKAVKSVAN 84
KI QLE +++IK V SV +
Sbjct: 116 KICSQLEARRLIKKVTSVQH 135
>gi|409046766|gb|EKM56245.1| hypothetical protein PHACADRAFT_117896 [Phanerochaete carnosa
HHB-10118-sp]
Length = 501
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 11/88 (12%)
Query: 3 ANGFLIGGNLLYKVKD--------PVTNEKL---KDSDNEEKVVYKIIEEAGNKGIWMRD 51
A FL+G L +KD V ++L KD EE +V I+ AGN+GIW +
Sbjct: 43 ATNFLLGAGLFKVLKDGSGKLMFRAVVKKELDACKDLSGEESLVLSHIQAAGNEGIWTKH 102
Query: 52 IRFKSNLMPTQLNKILKQLETKKIIKAV 79
I+ K+ L T +++ LK L KK++K +
Sbjct: 103 IKVKTELHQTVIDRCLKSLTQKKLVKCI 130
>gi|407919972|gb|EKG13191.1| RNA polymerase Rpc34 [Macrophomina phaseolina MS6]
Length = 267
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 29 DNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
D E++VY I A ++G+W R I+ K+N T +NK LK LE K+++K++ SV
Sbjct: 2 DPNERLVYSHISSAEDQGMWTRTIKAKTNFHQTVINKALKSLEGKRLVKSITSV 55
>gi|255720276|ref|XP_002556418.1| KLTH0H12738p [Lachancea thermotolerans]
gi|238942384|emb|CAR30556.1| KLTH0H12738p [Lachancea thermotolerans CBS 6340]
Length = 310
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 37/52 (71%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
+E +VY IE +G +GIW + I+ ++NL ++K LK LE+++ +K+VKSV
Sbjct: 89 DEALVYSYIEASGREGIWTKTIKARTNLHTVVVSKCLKSLESQRYVKSVKSV 140
>gi|170095840|ref|XP_001879140.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645508|gb|EDR09755.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 462
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 57/110 (51%), Gaps = 14/110 (12%)
Query: 3 ANGFLIGGNLLYKVKDP--------VTNEKL---KDSDNEEKVVYKIIEEAGNKGIWMRD 51
A FL+G L +KDP VT +L KD EE +V I+ A +GIW +
Sbjct: 43 ALNFLLGVGLFKSLKDPKGHILFRAVTKNELVATKDLTGEENLVLSHIKIAATEGIWTKH 102
Query: 52 IRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIE---YLTEGTVNAMVL 98
++ K+NL T +++ LK L K++IK V SV + Y+ EG ++ L
Sbjct: 103 LKAKTNLHQTVIDRCLKTLVQKRLIKRVPSVQHPTRKIYMLEGLEPSIAL 152
>gi|242776068|ref|XP_002478769.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Talaromyces stipitatus ATCC 10500]
gi|218722388|gb|EED21806.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Talaromyces stipitatus ATCC 10500]
Length = 353
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L +KV EK++ ++ EK+VY +I G GIW+R + +++L T L+K LK LE
Sbjct: 70 LAWKVIAEEDAEKIQSLNDTEKLVYNVIHSTGRTGIWIRQLGKRTDLHKTSLDKALKSLE 129
Query: 72 TKKIIKAVKSVAN 84
K IK++ +V +
Sbjct: 130 GKNFIKSIVNVKH 142
>gi|452845009|gb|EME46943.1| hypothetical protein DOTSEDRAFT_70771 [Dothistroma septosporum
NZE10]
Length = 378
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 44/73 (60%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ 69
G L + V+ ++K D +EK VY+ IE A G+W+RDI+ K+N+ + + K + +
Sbjct: 69 GKLGWSVRPRDAARQIKGLDRDEKAVYEEIEAAHTDGVWVRDIKKKTNIGDSGMKKAISK 128
Query: 70 LETKKIIKAVKSV 82
LE +IK++ ++
Sbjct: 129 LEGTNLIKSITNI 141
>gi|344300161|gb|EGW30501.1| 34-kDa subunit of RNA polymerase III (C) [Spathaspora passalidarum
NRRL Y-27907]
Length = 317
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
G L ++ K+ +EE +VY IE +G +GIW + I+ ++NL + K LK
Sbjct: 61 GEELKFQAVSVTEASKITQMTDEEAMVYSYIEASGREGIWTKTIKARTNLHQHVVAKCLK 120
Query: 69 QLETKKIIKAVKSVAN 84
LE ++ IK++KSV +
Sbjct: 121 SLEGQRYIKSIKSVKH 136
>gi|212532631|ref|XP_002146472.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Talaromyces marneffei ATCC 18224]
gi|210071836|gb|EEA25925.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Talaromyces marneffei ATCC 18224]
Length = 359
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L +KV EK++ ++ EK+VY +I G GIW+R + +++L T L+K LK LE
Sbjct: 70 LAWKVIAEEDAEKIQSLNDTEKLVYNVIHSTGRTGIWIRQLGKRTDLHKTSLDKALKSLE 129
Query: 72 TKKIIKAVKSV 82
K IK++ +V
Sbjct: 130 GKNFIKSIFNV 140
>gi|294889371|ref|XP_002772779.1| DNA-directed RNA polymerases iii 39 Kd polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239877329|gb|EER04595.1| DNA-directed RNA polymerases iii 39 Kd polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 438
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNL----MPTQLN 64
G LLY +KL+ D +++YK+I+ AG +GIW +D+ ++N+ +
Sbjct: 56 AGKLLYTAVPAEIAQKLRGLDQTFRMIYKLIKMAGTQGIWNKDLATRANMEHRIASGSVT 115
Query: 65 KILKQLETKKIIKAVKSV 82
KI QLE +++IK V SV
Sbjct: 116 KICSQLEARRLIKKVTSV 133
>gi|134079876|emb|CAK41008.1| unnamed protein product [Aspergillus niger]
Length = 366
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
+L+D +E +VY +I G GIW+R I ++NL + L++ LK LE++ IK+V +V
Sbjct: 96 RLRDLSPDESLVYNVIHSTGRSGIWVRAIGNRTNLHKSILDRCLKSLESRSYIKSVHNV 154
>gi|449015431|dbj|BAM78833.1| RNA polymerase III subunit C34 [Cyanidioschyzon merolae strain 10D]
Length = 371
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 23 EKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
++L N E+ VY+ I AG GIW+R IR + L +N+ LK+L+ ++++K V+S+
Sbjct: 106 KRLAGLTNTERAVYEQIRAAGEHGIWVRHIRGRLGLPLADVNRTLKELQRRELVKQVQSI 165
Query: 83 AN 84
N
Sbjct: 166 RN 167
>gi|367010832|ref|XP_003679917.1| hypothetical protein TDEL_0B05770 [Torulaspora delbrueckii]
gi|359747575|emb|CCE90706.1| hypothetical protein TDEL_0B05770 [Torulaspora delbrueckii]
Length = 309
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 36/52 (69%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
EE +VY IE +G +GIW + I+ K+NL + K LK LE+++ +K+VKSV
Sbjct: 89 EEALVYSYIEASGREGIWTKTIKAKTNLHQHVVLKCLKSLESQRYVKSVKSV 140
>gi|164660610|ref|XP_001731428.1| hypothetical protein MGL_1611 [Malassezia globosa CBS 7966]
gi|159105328|gb|EDP44214.1| hypothetical protein MGL_1611 [Malassezia globosa CBS 7966]
Length = 507
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 40/58 (68%)
Query: 25 LKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
L D+ E ++Y I++A N+GIW + I+ ++NL T + + L+ LE K+++K+VKSV
Sbjct: 83 LGSMDSNELIIYNHIKDARNEGIWTKLIKARTNLHQTIMTRCLRTLEQKQLVKSVKSV 140
>gi|403217351|emb|CCK71845.1| hypothetical protein KNAG_0I00540 [Kazachstania naganishii CBS
8797]
Length = 335
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 30 NEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
+EE +VY IE +G +GIW + I+ ++NL + K LK LE+++ +K+VKSV
Sbjct: 101 SEESLVYSYIEASGREGIWSKTIKARTNLHQHVVLKCLKSLESQRYVKSVKSV 153
>gi|254582765|ref|XP_002499114.1| ZYRO0E04114p [Zygosaccharomyces rouxii]
gi|186703770|emb|CAQ43460.1| DNA-directed RNA polymerase III subunit RPC6 [Zygosaccharomyces
rouxii]
gi|238942688|emb|CAR30859.1| ZYRO0E04114p [Zygosaccharomyces rouxii]
Length = 312
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 36/52 (69%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
EE +VY IE +G +GIW + I+ K+NL + K LK LE+++ +K+VKSV
Sbjct: 89 EESLVYSYIEASGREGIWTKTIKAKTNLHQHVVLKCLKSLESQRYVKSVKSV 140
>gi|226494183|ref|NP_001147652.1| LOC100281261 [Zea mays]
gi|194702730|gb|ACF85449.1| unknown [Zea mays]
gi|195612858|gb|ACG28259.1| RNA polymerase Rpc34 subunit family protein [Zea mays]
Length = 257
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 30 NEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
N+E++VYK+I EAGNKG+WM DIR K + P K+++ L ++K V V
Sbjct: 48 NQERLVYKLIFEAGNKGMWMLDIRKKLLMAPNVATKVVRTLVASGLLKEVSDV 100
>gi|451995926|gb|EMD88393.1| hypothetical protein COCHEDRAFT_1181344 [Cochliobolus
heterostrophus C5]
Length = 370
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 46/75 (61%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ 69
G +K++ +KL+ +E+++Y I++A +G+W + +R ++N+ L K LK
Sbjct: 84 GVTCWKLRTREEADKLRRLTPDERLIYSYIDQAQTEGVWSKALRSRANVTQQTLTKCLKS 143
Query: 70 LETKKIIKAVKSVAN 84
LE+K ++++V SV N
Sbjct: 144 LESKDLVQSVMSVKN 158
>gi|410080596|ref|XP_003957878.1| hypothetical protein KAFR_0F01470 [Kazachstania africana CBS 2517]
gi|372464465|emb|CCF58743.1| hypothetical protein KAFR_0F01470 [Kazachstania africana CBS 2517]
Length = 310
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 22 NEKLKDS--DNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAV 79
NE K S +EE +VY IE +G +GIW + I+ ++NL + K LK LE+++ +K+V
Sbjct: 78 NEASKKSAMSSEEALVYSYIEASGREGIWSKTIKMRTNLHQHVVLKCLKSLESQRYVKSV 137
Query: 80 KSV 82
KSV
Sbjct: 138 KSV 140
>gi|303390946|ref|XP_003073703.1| DNA-directed RNA polymerase III subunit C34 [Encephalitozoon
intestinalis ATCC 50506]
gi|303302851|gb|ADM12343.1| DNA-directed RNA polymerase III subunit C34 [Encephalitozoon
intestinalis ATCC 50506]
Length = 235
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 42/56 (75%)
Query: 29 DNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVAN 84
D+ E ++Y ++ ++G++G+W++ I+ K+N+ + K+L+ +ETK+IIK+VK + N
Sbjct: 64 DDYELMIYNLVNQSGSEGVWLKVIKDKTNMPHNLVGKVLRNMETKRIIKSVKCLKN 119
>gi|150865268|ref|XP_001384413.2| 34-kDa subunit of RNA polymerase III (C) [Scheffersomyces stipitis
CBS 6054]
gi|149386524|gb|ABN66384.2| 34-kDa subunit of RNA polymerase III (C) [Scheffersomyces stipitis
CBS 6054]
Length = 322
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ 69
G+L ++ K+ ++E +VY IE +G +GIW + I+ K+NL + + LK
Sbjct: 61 GDLKFQAVSTTEANKITQMTDDEAMVYSYIEASGREGIWTKTIKAKTNLHQHVVVRCLKA 120
Query: 70 LETKKIIKAVKSV 82
LE ++ IK++KSV
Sbjct: 121 LENQRYIKSIKSV 133
>gi|50294173|ref|XP_449498.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528812|emb|CAG62474.1| unnamed protein product [Candida glabrata]
Length = 317
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
EE +VY IE +G +GIW + I+ ++NL + K LK LE+++ +K+VKSV
Sbjct: 89 EEALVYSYIESSGREGIWSKTIKARTNLHQHVVLKCLKSLESQRYVKSVKSV 140
>gi|410730683|ref|XP_003980162.1| hypothetical protein NDAI_0G05030 [Naumovozyma dairenensis CBS 421]
gi|401780339|emb|CCK73486.1| hypothetical protein NDAI_0G05030 [Naumovozyma dairenensis CBS 421]
Length = 330
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 29 DNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
+EE +VY IE +G +GIW + I+ ++NL + K LK LE+++ +K+VKSV
Sbjct: 84 SSEEALVYSYIEASGREGIWSKTIKARTNLHQHVVLKCLKSLESQRYVKSVKSV 137
>gi|400602056|gb|EJP69681.1| RNA polymerase Rpc34 subunit [Beauveria bassiana ARSEF 2860]
Length = 383
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKV-VYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
G +L+K +D K K +E+V VY ++++AG GIW + ++ + N+ + L LK
Sbjct: 75 GQVLWKWRDAQEAHKYKQCTTDEQVLVYSLVDDAGGDGIWSQTLQKRLNMHDSVLKNALK 134
Query: 69 QLETKKIIKAVKSV 82
QL+TK +I K+V
Sbjct: 135 QLQTKGLIAPFKNV 148
>gi|363750075|ref|XP_003645255.1| hypothetical protein Ecym_2738 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888888|gb|AET38438.1| Hypothetical protein Ecym_2738 [Eremothecium cymbalariae
DBVPG#7215]
Length = 315
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 30 NEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
++E +VY IE +G +GIW + I+ K+NL + K LK LE+++ +K+VKSV
Sbjct: 88 SDESLVYSYIEASGREGIWTKTIKAKTNLHQHVVLKCLKSLESQRYVKSVKSV 140
>gi|366988061|ref|XP_003673797.1| hypothetical protein NCAS_0A08580 [Naumovozyma castellii CBS 4309]
gi|342299660|emb|CCC67416.1| hypothetical protein NCAS_0A08580 [Naumovozyma castellii CBS 4309]
Length = 339
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
EE +VY IE +G +GIW + I+ ++NL + K LK LE+++ +K+VKSV
Sbjct: 107 EEALVYSYIEASGREGIWSKTIKARTNLHQHVVLKCLKSLESQRYVKSVKSV 158
>gi|45190794|ref|NP_985048.1| AER191Wp [Ashbya gossypii ATCC 10895]
gi|44983836|gb|AAS52872.1| AER191Wp [Ashbya gossypii ATCC 10895]
gi|374108272|gb|AEY97179.1| FAER191Wp [Ashbya gossypii FDAG1]
Length = 314
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 30 NEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
++E +VY IE +G +GIW + I+ K+NL + K LK LE+++ +K+VKSV
Sbjct: 88 SDEALVYSYIEASGREGIWTKTIKAKTNLHQHVVLKCLKSLESQRYVKSVKSV 140
>gi|238498852|ref|XP_002380661.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Aspergillus flavus NRRL3357]
gi|220693935|gb|EED50280.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Aspergillus flavus NRRL3357]
gi|391868106|gb|EIT77329.1| RNA polymerase III, subunit C34 [Aspergillus oryzae 3.042]
Length = 355
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L +K+ EKL++ +E +VY +I G GIW+R I ++ L + L++ LK LE
Sbjct: 74 LAWKIISREDAEKLQNLSPDESLVYNVIHSTGRNGIWVRAIGTRTGLHKSILDRCLKSLE 133
Query: 72 TKKIIKAVKSV 82
K IK+V +V
Sbjct: 134 GKNYIKSVHNV 144
>gi|255955101|ref|XP_002568303.1| Pc21g12760 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590014|emb|CAP96173.1| Pc21g12760 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 350
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ 69
G L +K+ D EKL++ +E +VY +I GIW+R I ++NL + L++ LK
Sbjct: 68 GKLTWKLIDREDAEKLRNLTPDEAMVYNVIHSTERTGIWVRHIGNRTNLHKSILDRCLKS 127
Query: 70 LETKKIIKAVKSV 82
LE K IK++ +V
Sbjct: 128 LEGKNYIKSLHNV 140
>gi|169782002|ref|XP_001825464.1| DNA-directed RNA polymerase III subunit Rpc34 [Aspergillus oryzae
RIB40]
gi|83774206|dbj|BAE64331.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 355
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L +K+ EKL++ +E +VY +I G GIW+R I ++ L + L++ LK LE
Sbjct: 74 LAWKIISREDAEKLQNLSPDESLVYNVIHSTGRNGIWVRAIGTRTGLHKSILDRCLKSLE 133
Query: 72 TKKIIKAVKSV 82
K IK+V +V
Sbjct: 134 GKNYIKSVHNV 144
>gi|346325877|gb|EGX95473.1| DNA-directed RNA polymerase III subunit Rpc34 [Cordyceps militaris
CM01]
Length = 383
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKV-VYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
G +L+K +D K K +E+V VY ++++AG GIW + ++ + N+ + L LK
Sbjct: 75 GQVLWKWRDAQEAHKYKQCTTDEQVLVYSLVDDAGGDGIWSQTLQKRLNMHDSVLKNALK 134
Query: 69 QLETKKIIKAVKSV 82
QL+TK +I K+V
Sbjct: 135 QLQTKGLIAPFKNV 148
>gi|392560402|gb|EIW53585.1| hypothetical protein TRAVEDRAFT_134281 [Trametes versicolor
FP-101664 SS1]
Length = 498
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 11/91 (12%)
Query: 3 ANGFLIGGNLLYKVKDP--------VTNEKL---KDSDNEEKVVYKIIEEAGNKGIWMRD 51
A FL+G LL +K+ V ++L KD EE ++ I+ A +GIW +
Sbjct: 43 ALNFLLGTGLLKALKNAKGAVSFRAVMKKELDVKKDMSGEESMILSYIQAAATEGIWTKH 102
Query: 52 IRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
++ K+ L T +++ LK L K +IKAVKSV
Sbjct: 103 LKAKTELHQTVIDRCLKSLTQKALIKAVKSV 133
>gi|121709264|ref|XP_001272362.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Aspergillus clavatus NRRL 1]
gi|119400511|gb|EAW10936.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Aspergillus clavatus NRRL 1]
Length = 355
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L +K+ EKL++ +E +VY +I G GIW+R I ++ L + L++ LK LE
Sbjct: 74 LAWKIISREDAEKLQNLSPDESLVYNVIHSTGRNGIWVRQIVTRTGLHKSILDRCLKSLE 133
Query: 72 TKKIIKAVKSV 82
K IK+V +V
Sbjct: 134 GKNYIKSVHNV 144
>gi|46107790|ref|XP_380954.1| hypothetical protein FG00778.1 [Gibberella zeae PH-1]
Length = 383
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKV-VYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
G +L+K +D K K +E+V VY +I+++G GIW + ++ + N+ + L LK
Sbjct: 75 GQVLWKWRDSQEAHKYKQCSTDEQVMVYSLIDDSGGDGIWSQTLQKRLNMHDSVLKNALK 134
Query: 69 QLETKKIIKAVKSV 82
QL+TK +I K+V
Sbjct: 135 QLQTKGLIAPFKNV 148
>gi|425773182|gb|EKV11551.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Penicillium digitatum Pd1]
gi|425778785|gb|EKV16890.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Penicillium digitatum PHI26]
Length = 351
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ 69
G L +K+ D EKL++ +E +VY +I GIW+R I ++NL + L++ LK
Sbjct: 68 GKLTWKLIDREDAEKLRNLTPDEAMVYNVIHSTERTGIWVRHIGNRTNLHKSILDRCLKA 127
Query: 70 LETKKIIKAVKSV 82
LE K IK++ +V
Sbjct: 128 LEGKNYIKSLHNV 140
>gi|366999516|ref|XP_003684494.1| hypothetical protein TPHA_0B03880 [Tetrapisispora phaffii CBS 4417]
gi|357522790|emb|CCE62060.1| hypothetical protein TPHA_0B03880 [Tetrapisispora phaffii CBS 4417]
Length = 360
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
EE +VY IE +G +GIW + I+ ++NL + K LK LE+++ +K+VKSV
Sbjct: 93 EESLVYSYIEASGREGIWTKTIKARTNLHQHVVLKCLKSLESQRYVKSVKSV 144
>gi|342883338|gb|EGU83852.1| hypothetical protein FOXB_05634 [Fusarium oxysporum Fo5176]
Length = 383
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKV-VYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
G +L+K +D K K +E+V VY +I+++G GIW + ++ + N+ + L LK
Sbjct: 75 GQVLWKWRDSEEAHKYKQCSTDEQVMVYSLIDDSGGDGIWSQTLQKRLNMHDSVLKNALK 134
Query: 69 QLETKKIIKAVKSV 82
QL+TK +I K+V
Sbjct: 135 QLQTKGLIAPFKNV 148
>gi|401837479|gb|EJT41403.1| RPC34-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 317
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
EE +VY IE +G +GIW + I+ ++NL + K LK LE+++ +K+VKSV
Sbjct: 89 EESLVYSYIEASGREGIWSKTIKARTNLHQHVVLKCLKSLESQRYVKSVKSV 140
>gi|365758618|gb|EHN00452.1| Rpc34p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 232
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
EE +VY IE +G +GIW + I+ ++NL + K LK LE+++ +K+VKSV
Sbjct: 4 EESLVYSYIEASGREGIWSKTIKARTNLHQHVVLKCLKSLESQRYVKSVKSV 55
>gi|223975579|gb|ACN31977.1| unknown [Zea mays]
gi|413935838|gb|AFW70389.1| RNA polymerase Rpc34 subunit family protein [Zea mays]
gi|413954528|gb|AFW87177.1| RNA polymerase Rpc34 subunit family protein [Zea mays]
Length = 260
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVAN 84
+E++ YK+I EAGNKG+WM DIR K + P K+++ L T++++K V V +
Sbjct: 52 QERLAYKLIFEAGNKGMWMLDIRKKLLMGPNIATKVVRTLVTRRLLKEVSDVRH 105
>gi|226530096|ref|NP_001151058.1| RNA polymerase Rpc34 subunit family protein [Zea mays]
gi|195643984|gb|ACG41460.1| RNA polymerase Rpc34 subunit family protein [Zea mays]
Length = 260
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 37/54 (68%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVAN 84
+E++ YK+I EAGNKG+WM DIR K + P K+++ L T++++K V V +
Sbjct: 52 QERLAYKLIFEAGNKGMWMLDIRKKLLMGPNIATKVVRTLVTRRLLKEVSDVRH 105
>gi|50555584|ref|XP_505200.1| YALI0F09295p [Yarrowia lipolytica]
gi|49651070|emb|CAG78007.1| YALI0F09295p [Yarrowia lipolytica CLIB122]
Length = 282
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
GG ++ + T + + ++E +VY I E+ GIW+R I +SNL +++ LK
Sbjct: 54 GGQVMLQAVSIETADIVSKLTSDEYIVYNYIAESERDGIWVRTITARSNLHINVVHRCLK 113
Query: 69 QLETKKIIKAVKSV 82
LE + IIK VKSV
Sbjct: 114 SLEQQHIIKMVKSV 127
>gi|401623803|gb|EJS41887.1| rpc34p [Saccharomyces arboricola H-6]
Length = 317
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
EE +VY IE +G +GIW + I+ ++NL + K LK LE+++ +K+VKSV
Sbjct: 89 EEALVYSYIEASGREGIWSKTIKARTNLHQHVVLKCLKSLESQRYVKSVKSV 140
>gi|344232616|gb|EGV64489.1| RNA polymerase Rpc34 [Candida tenuis ATCC 10573]
Length = 321
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
G +L+++ K+ +E ++Y IE +G +GIW + I+ K+NL + + LK
Sbjct: 64 GEDLMFQAISVSEANKITSMSEDEAMIYSYIEASGREGIWTKTIKAKTNLHQHIVVRCLK 123
Query: 69 QLETKKIIKAVKSV 82
LE ++ IK++KSV
Sbjct: 124 TLENQRYIKSIKSV 137
>gi|323352456|gb|EGA84957.1| Rpc34p [Saccharomyces cerevisiae VL3]
Length = 317
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
EE +VY IE +G +GIW + I+ ++NL + K LK LE+++ +K+VKSV
Sbjct: 89 EEALVYSYIEASGREGIWSKTIKARTNLHQHVVLKCLKSLESQRYVKSVKSV 140
>gi|323303202|gb|EGA57001.1| Rpc34p [Saccharomyces cerevisiae FostersB]
Length = 241
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
EE +VY IE +G +GIW + I+ ++NL + K LK LE+++ +K+VKSV
Sbjct: 86 EEALVYSYIEASGREGIWSKTIKARTNLHQHVVLKCLKSLESQRYVKSVKSV 137
>gi|6324330|ref|NP_014400.1| Rpc34p [Saccharomyces cerevisiae S288c]
gi|417698|sp|P32910.1|RPC6_YEAST RecName: Full=DNA-directed RNA polymerase III subunit RPC6;
Short=RNA polymerase III subunit C6; AltName: Full=C34;
AltName: Full=DNA-directed RNA polymerase III 36 kDa
polypeptide
gi|4379|emb|CAA45278.1| DNA dependent RNA polymerase c(III) subunit c34 [Saccharomyces
cerevisiae]
gi|496721|emb|CAA54572.1| RNA polymerase III [Saccharomyces cerevisiae]
gi|1302473|emb|CAA96279.1| RPC34 [Saccharomyces cerevisiae]
gi|190408995|gb|EDV12260.1| RNA polymerase III 34 kDa subunit [Saccharomyces cerevisiae
RM11-1a]
gi|207341597|gb|EDZ69606.1| YNR003Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259148951|emb|CAY82195.1| Rpc34p [Saccharomyces cerevisiae EC1118]
gi|285814651|tpg|DAA10545.1| TPA: Rpc34p [Saccharomyces cerevisiae S288c]
gi|323331758|gb|EGA73171.1| Rpc34p [Saccharomyces cerevisiae AWRI796]
gi|323335724|gb|EGA77005.1| Rpc34p [Saccharomyces cerevisiae Vin13]
gi|349580938|dbj|GAA26097.1| K7_Rpc34p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365763395|gb|EHN04924.1| Rpc34p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296990|gb|EIW08091.1| Rpc34p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 317
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
EE +VY IE +G +GIW + I+ ++NL + K LK LE+++ +K+VKSV
Sbjct: 89 EEALVYSYIEASGREGIWSKTIKARTNLHQHVVLKCLKSLESQRYVKSVKSV 140
>gi|256273367|gb|EEU08305.1| Rpc34p [Saccharomyces cerevisiae JAY291]
Length = 317
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
EE +VY IE +G +GIW + I+ ++NL + K LK LE+++ +K+VKSV
Sbjct: 89 EEALVYSYIEASGREGIWSKTIKARTNLHQHVVLKCLKSLESQRYVKSVKSV 140
>gi|451850732|gb|EMD64033.1| hypothetical protein COCSADRAFT_116947 [Cochliobolus sativus
ND90Pr]
Length = 368
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 45/75 (60%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ 69
G +K++ +KL+ +E+++Y I++ +GIW + +R ++N+ L K LK
Sbjct: 82 GVTCWKLRTREEADKLRRLTPDERLIYSYIDQVQTEGIWSKALRSRTNVTQQTLTKCLKS 141
Query: 70 LETKKIIKAVKSVAN 84
LE+K ++++V SV N
Sbjct: 142 LESKDLVQSVMSVKN 156
>gi|151944532|gb|EDN62810.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
Length = 317
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
EE +VY IE +G +GIW + I+ ++NL + K LK LE+++ +K+VKSV
Sbjct: 89 EEALVYSYIEASGREGIWSKTIKARTNLHQHVVLKCLKSLESQRYVKSVKSV 140
>gi|156841355|ref|XP_001644051.1| hypothetical protein Kpol_1014p11 [Vanderwaltozyma polyspora DSM
70294]
gi|156114685|gb|EDO16193.1| hypothetical protein Kpol_1014p11 [Vanderwaltozyma polyspora DSM
70294]
Length = 321
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
EE +VY IE +G +GIW + I+ ++NL + K LK LE+++ +K+VKSV
Sbjct: 91 EEALVYSHIEASGREGIWTKTIKARTNLHQHVVLKCLKSLESQRYVKSVKSV 142
>gi|19074630|ref|NP_586136.1| DNA-DIRECTED RNA POLYMERASE III 34kDa SUBUNIT [Encephalitozoon
cuniculi GB-M1]
gi|19069272|emb|CAD25740.1| DNA-DIRECTED RNA POLYMERASE III 34kDa SUBUNIT [Encephalitozoon
cuniculi GB-M1]
gi|449330226|gb|AGE96487.1| DNA-directed RNA polymerase III 34kDa subunit [Encephalitozoon
cuniculi]
Length = 236
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 40/56 (71%)
Query: 29 DNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVAN 84
D+ E +Y ++ ++G +G+W++ I+ K+N+ + K+L+ +E+K+IIK+VK + N
Sbjct: 65 DDYELTIYNLVSQSGGEGVWLKVIKDKTNMPHNLVGKVLRSMESKRIIKSVKCLKN 120
>gi|444317567|ref|XP_004179441.1| hypothetical protein TBLA_0C01070 [Tetrapisispora blattae CBS 6284]
gi|387512482|emb|CCH59922.1| hypothetical protein TBLA_0C01070 [Tetrapisispora blattae CBS 6284]
Length = 334
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
EE +VY IE +G +GIW + I+ ++NL + K LK LE+++ +K+VKSV
Sbjct: 88 EESLVYSYIEASGREGIWSKTIKARTNLHQHIVLKCLKSLESQRYVKSVKSV 139
>gi|323307394|gb|EGA60670.1| Rpc34p [Saccharomyces cerevisiae FostersO]
gi|323346740|gb|EGA81021.1| Rpc34p [Saccharomyces cerevisiae Lalvin QA23]
Length = 295
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
EE +VY IE +G +GIW + I+ ++NL + K LK LE+++ +K+VKSV
Sbjct: 67 EEALVYSYIEASGREGIWSKTIKARTNLHQHVVLKCLKSLESQRYVKSVKSV 118
>gi|255732355|ref|XP_002551101.1| hypothetical protein CTRG_05399 [Candida tropicalis MYA-3404]
gi|240131387|gb|EER30947.1| hypothetical protein CTRG_05399 [Candida tropicalis MYA-3404]
Length = 331
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 30 NEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
++E ++Y IE +G +GIW + I+ K+NL + K LK LE + IK++KSV
Sbjct: 82 DDEAMIYSYIENSGREGIWTKTIKAKTNLHQHIVQKCLKSLENNRYIKSIKSV 134
>gi|302927723|ref|XP_003054557.1| hypothetical protein NECHADRAFT_75405 [Nectria haematococca mpVI
77-13-4]
gi|256735498|gb|EEU48844.1| hypothetical protein NECHADRAFT_75405 [Nectria haematococca mpVI
77-13-4]
Length = 352
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKV-VYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
G +L+K +D K K +E+V VY +I+++G GIW + ++ + N+ + L LK
Sbjct: 72 GQVLWKWRDAQEAHKYKQCSTDEQVMVYSLIDDSGGDGIWSQTLQKRLNMHDSVLKNALK 131
Query: 69 QLETKKIIKAVKSV 82
QL+TK +I K+V
Sbjct: 132 QLQTKGLIAPFKNV 145
>gi|448119652|ref|XP_004203785.1| Piso0_000805 [Millerozyma farinosa CBS 7064]
gi|359384653|emb|CCE78188.1| Piso0_000805 [Millerozyma farinosa CBS 7064]
Length = 322
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
G L+++ K+ +E ++Y IE +G +GIW + ++ K+NL + + LK
Sbjct: 59 GDELMFQATSMSEASKITSMSEDEAMIYSYIEASGREGIWTKTLKAKTNLHQHIVVRCLK 118
Query: 69 QLETKKIIKAVKSV 82
LE ++ IK++KSV
Sbjct: 119 SLEGQRYIKSIKSV 132
>gi|241956760|ref|XP_002421100.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
gi|223644443|emb|CAX41258.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
Length = 330
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
K+ ++E ++Y IE +G +GIW + I+ K+NL + K LK LE + IK++KSV
Sbjct: 77 KVSSMSDDEAMIYSYIEASGREGIWTKTIKAKTNLHQHIVQKCLKNLENNRYIKSIKSV 135
>gi|68473450|ref|XP_719283.1| hypothetical protein CaO19.13051 [Candida albicans SC5314]
gi|68473689|ref|XP_719169.1| hypothetical protein CaO19.5608 [Candida albicans SC5314]
gi|46440974|gb|EAL00275.1| hypothetical protein CaO19.5608 [Candida albicans SC5314]
gi|46441094|gb|EAL00394.1| hypothetical protein CaO19.13051 [Candida albicans SC5314]
Length = 330
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
K+ ++E ++Y IE +G +GIW + I+ K+NL + K LK LE + IK++KSV
Sbjct: 77 KVSSMSDDEAMIYSYIEASGREGIWTKTIKAKTNLHQHIVQKCLKNLENNRYIKSIKSV 135
>gi|238883048|gb|EEQ46686.1| hypothetical protein CAWG_05049 [Candida albicans WO-1]
Length = 330
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
K+ ++E ++Y IE +G +GIW + I+ K+NL + K LK LE + IK++KSV
Sbjct: 77 KVSSMSDDEAMIYSYIEASGREGIWTKTIKAKTNLHQHIVQKCLKNLENNRYIKSIKSV 135
>gi|409080140|gb|EKM80501.1| hypothetical protein AGABI1DRAFT_58346 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 464
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANI 85
KD + EE +V+ I+ AG++GIW + ++ K+NL T +++ LK L K+++K V SV +
Sbjct: 77 KDLNGEENLVFSHIKAAGSEGIWTKHLKTKTNLHQTIIDRSLKTLTQKRLVKRVPSVQHP 136
Query: 86 E---YLTEG 91
Y+ EG
Sbjct: 137 TRKIYMLEG 145
>gi|403367656|gb|EJY83651.1| DNA-directed RNA polymerase III, subunit C34 [Oxytricha trifallax]
Length = 289
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 7/79 (8%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLN---- 64
G NL+Y+ + KL+D E+ +VY++IEE+G+ G ++D++ K L P N
Sbjct: 57 GQNLVYRYQSEEQAHKLRDLLPEDVLVYQMIEESGDNGTQIQDLKIK--LTPQGFNSVIL 114
Query: 65 -KILKQLETKKIIKAVKSV 82
KILK++E K +IK +KS+
Sbjct: 115 TKILKKIEKKGLIKKIKSL 133
>gi|322707597|gb|EFY99175.1| DNA-directed RNA polymerase III subunit RPC6 [Metarhizium
anisopliae ARSEF 23]
Length = 397
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKV-VYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
G +L+K +D K K +E+V VY +I+++G GIW + ++ + N+ + L +K
Sbjct: 81 GQVLWKWRDAQEAHKYKQCSTDEQVMVYSLIDDSGGDGIWSQTLQKRLNMHDSVLKNAIK 140
Query: 69 QLETKKIIKAVKSV 82
QL+TK +I K+V
Sbjct: 141 QLQTKGLIAPFKNV 154
>gi|426198093|gb|EKV48019.1| hypothetical protein AGABI2DRAFT_202311 [Agaricus bisporus var.
bisporus H97]
Length = 464
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANI 85
KD + EE +V+ I+ AG++GIW + ++ K+NL T +++ LK L K+++K V SV +
Sbjct: 77 KDLNGEENLVFSHIKAAGSEGIWTKHLKTKTNLHQTIIDRSLKTLTQKRLVKRVPSVQHP 136
Query: 86 E---YLTEG 91
Y+ EG
Sbjct: 137 TRKIYMLEG 145
>gi|149236305|ref|XP_001524030.1| hypothetical protein LELG_04843 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452406|gb|EDK46662.1| hypothetical protein LELG_04843 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 326
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
G LL++ K+ + +E ++Y IE G +GIW + ++ K+NL + K LK
Sbjct: 60 GDELLFQAVSADDARKVANMTTDEAMIYAHIEALGREGIWTKTLKSKTNLHQHIVAKCLK 119
Query: 69 QLETKKIIKAVKSV 82
LE ++ IK++KSV
Sbjct: 120 NLENQRYIKSIKSV 133
>gi|297743442|emb|CBI36309.3| unnamed protein product [Vitis vinifera]
Length = 493
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
L K K P TN + + E+V+Y +I + GIW RD++ ++NL + K LK L+
Sbjct: 97 LSLKRKRPDTNAASQPLLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDNVVTKSLKALQ 156
Query: 72 TKKIIKAVKSV 82
KK+IK V ++
Sbjct: 157 VKKLIKEVVNI 167
>gi|393221910|gb|EJD07394.1| hypothetical protein FOMMEDRAFT_164375 [Fomitiporia mediterranea
MF3/22]
Length = 417
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
GG + Y+ E KD EE +V I+ A N+GIW + ++ K+ L T +++ LK
Sbjct: 62 GGGISYRAVGKNEIEAKKDLAGEELLVLNHIQAASNEGIWTKHLKTKTELHQTVIDRCLK 121
Query: 69 QLETKKIIKAVKSVANIEYLTEGT 92
L K++I KS+ NI+Y T T
Sbjct: 122 SLVHKQLI---KSITNIKYPTRKT 142
>gi|149041227|gb|EDL95160.1| polymerase (RNA) III (DNA directed) polypeptide F (predicted),
isoform CRA_c [Rattus norvegicus]
Length = 193
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 33/44 (75%), Gaps = 3/44 (6%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNK---GIWMRDI 52
LLY++KD K+K SDN+EK+VY+IIE+AGNK G++ R I
Sbjct: 127 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKAQDGLYSRCI 170
>gi|443918030|gb|ELU38618.1| RNA polymerase rpc34 subunit domain-containing protein [Rhizoctonia
solani AG-1 IA]
Length = 491
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 29 DNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
D +E +VYK I+EA N+GIW + ++ + L + + + LK LE K ++K++KSV
Sbjct: 70 DADESIVYKKIQEAKNEGIWTKHLK-STELHQSIITRALKSLEKKGLVKSIKSV 122
>gi|406606568|emb|CCH42067.1| DNA-directed RNA polymerase III subunit [Wickerhamomyces ciferrii]
Length = 300
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 36/53 (67%)
Query: 30 NEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
++E ++Y IE +G +GIW + I+ ++NL + + LK LE ++ IK+VKSV
Sbjct: 82 SDESIIYSYIEASGREGIWTKTIKARTNLHQHVVLRCLKSLEGQRFIKSVKSV 134
>gi|408391211|gb|EKJ70592.1| hypothetical protein FPSE_09237 [Fusarium pseudograminearum CS3096]
Length = 383
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKV-VYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
G +L+K +D K K +E+V VY +I+++G GIW + ++ + N+ + L LK
Sbjct: 75 GQVLWKWRDSQEAHKYKQCSTDEQVMVYSLIDDSGGDGIWSQTLQKRLNMHDSVLKNALK 134
Query: 69 QLETKKIIKAVKSV 82
QL+ K +I K+V
Sbjct: 135 QLQAKGLIAPFKNV 148
>gi|254574058|ref|XP_002494138.1| RNA polymerase III subunit C34 [Komagataella pastoris GS115]
gi|238033937|emb|CAY71959.1| RNA polymerase III subunit C34 [Komagataella pastoris GS115]
gi|328354043|emb|CCA40440.1| DNA-directed RNA polymerase III subunit C34 [Komagataella pastoris
CBS 7435]
Length = 317
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
K+ + +E ++Y IE +G +GIW + I+ K+NL + + LK LE + IK+VKSV
Sbjct: 82 KISNMSQDEAMIYSYIEGSGREGIWTKTIKAKTNLHQHIVLRCLKSLENQSFIKSVKSV 140
>gi|169595432|ref|XP_001791140.1| hypothetical protein SNOG_00455 [Phaeosphaeria nodorum SN15]
gi|111070830|gb|EAT91950.1| hypothetical protein SNOG_00455 [Phaeosphaeria nodorum SN15]
Length = 364
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 44/73 (60%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ 69
G +K++ +KL+ +E+++Y I++ +GIW + +R ++N+ L K LK
Sbjct: 82 GEPCWKLRSRTDADKLRRLTPDERLLYHHIDQVQAEGIWSKALRMRTNVTQQVLTKCLKS 141
Query: 70 LETKKIIKAVKSV 82
LE+K ++++V SV
Sbjct: 142 LESKDLVQSVMSV 154
>gi|440632371|gb|ELR02290.1| hypothetical protein GMDG_05359 [Geomyces destructans 20631-21]
Length = 333
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 38/55 (69%)
Query: 30 NEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVAN 84
+E+++VY +I+E+ +GIW + I+ K+ L + + LK LETK++I +KSV +
Sbjct: 91 HEQEMVYSLIDESSTEGIWSKTIKNKTALHESLMRSALKALETKRLISDMKSVEH 145
>gi|340518110|gb|EGR48352.1| predicted protein [Trichoderma reesei QM6a]
Length = 352
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKV-VYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
G +L+K +D K K +E+V VY +I+++G GIW + ++ + N+ + L +K
Sbjct: 79 GQVLWKWRDKQEAHKYKQCTTDEQVMVYSLIDDSGGDGIWTQTLQKRLNMHDSVLKNAIK 138
Query: 69 QLETKKIIKAVKSV 82
QL+ K +I K+V
Sbjct: 139 QLQAKGLIAPFKNV 152
>gi|448533304|ref|XP_003870604.1| Rpc34 protein [Candida orthopsilosis Co 90-125]
gi|380354959|emb|CCG24475.1| Rpc34 protein [Candida orthopsilosis]
Length = 322
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 40/61 (65%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83
KL ++E+++Y IE + +GIW + ++ K+NL ++K LK LE ++ IK++KSV
Sbjct: 75 KLVSMSDDERMIYSYIEASQREGIWTKTLKAKTNLHQHIVSKCLKNLEHQRYIKSIKSVK 134
Query: 84 N 84
+
Sbjct: 135 H 135
>gi|300708286|ref|XP_002996325.1| hypothetical protein NCER_100585 [Nosema ceranae BRL01]
gi|239605618|gb|EEQ82654.1| hypothetical protein NCER_100585 [Nosema ceranae BRL01]
Length = 233
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 41/57 (71%)
Query: 28 SDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVAN 84
SD+ E ++ +I ++G +G+W+++IR K+N+ + KIL +E +++IK++K++ N
Sbjct: 63 SDDYETLIINLIAQSGTEGMWIKEIREKTNMPQNLILKILSSMENRRVIKSIKNIKN 119
>gi|294654533|ref|XP_456595.2| DEHA2A06248p [Debaryomyces hansenii CBS767]
gi|199428958|emb|CAG84551.2| DEHA2A06248p [Debaryomyces hansenii CBS767]
Length = 323
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
K+ +E ++Y IE +G +GIW + I+ K+NL + + LK LE ++ IK++KSV
Sbjct: 75 KITSMSEDEAMIYSYIEASGREGIWTKTIKAKTNLHQHIVVRCLKALENQRYIKSIKSV 133
>gi|452983857|gb|EME83615.1| hypothetical protein MYCFIDRAFT_203692 [Pseudocercospora
fijiensis CIRAD86]
Length = 327
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQ-LNKILK 68
G L + + ++ D +EK VY I+EEA ++GIW+++I+ K+ + Q + K +
Sbjct: 20 GRLAWNARPQDAARQITALDRDEKAVYVIVEEAHDRGIWVKEIKKKATGVAQQTVQKAVN 79
Query: 69 QLETKKIIKAVKSV 82
++E +IK+VKSV
Sbjct: 80 KMEKANLIKSVKSV 93
>gi|353238962|emb|CCA70891.1| related to RPC34-DNA-directed RNA polymerase III, 34 KD subunit
[Piriformospora indica DSM 11827]
Length = 468
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ 69
G LLYK + D + + V +IEEA N+G+W + + +++L + + LKQ
Sbjct: 64 GKLLYKGVQVKEAKSKSSMDKDTQAVLALIEEAKNEGVWTKTLERRTDLPQKVVTRSLKQ 123
Query: 70 LETKKIIKAVKSV 82
LE + +IK +KSV
Sbjct: 124 LEKQGLIKPIKSV 136
>gi|393244532|gb|EJD52044.1| hypothetical protein AURDEDRAFT_111548 [Auricularia delicata
TFB-10046 SS5]
Length = 464
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 11/93 (11%)
Query: 1 MLANGFLIGGNLLYKVKD--------PVTNEKL---KDSDNEEKVVYKIIEEAGNKGIWM 49
M A FL+ ++ + D VT ++L K+ +E +V + I+ A N GIW
Sbjct: 40 MDALNFLLKAGMIVALTDKNGTVSYRAVTKKELDVKKEISGDENLVLQAIQAAKNDGIWT 99
Query: 50 RDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
+ ++ K++L T + + LK LE K +IK +KSV
Sbjct: 100 KHLKSKTDLHQTIITRCLKSLEQKGLIKPIKSV 132
>gi|322696633|gb|EFY88422.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Metarhizium acridum CQMa 102]
Length = 395
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKV-VYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
G +L+K +D K K +E+V VY +I+++G GIW + ++ + N+ + L +K
Sbjct: 81 GQVLWKWRDAQEAHKYKQCSTDEQVMVYSLIDDSGGDGIWSQTLQKRLNMHDSVLKNAIK 140
Query: 69 QLETKKIIKAVKSV 82
QL+ K +I K+V
Sbjct: 141 QLQAKGLIAPFKNV 154
>gi|354543012|emb|CCE39730.1| hypothetical protein CPAR2_601500 [Candida parapsilosis]
Length = 319
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 40/61 (65%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83
KL ++E+++Y IE + +GIW + ++ K+NL ++K LK LE ++ IK++KSV
Sbjct: 75 KLVSMTDDERMIYSYIEASQREGIWTKTLKAKTNLHQHIVSKCLKNLEHQRYIKSIKSVK 134
Query: 84 N 84
+
Sbjct: 135 H 135
>gi|453086184|gb|EMF14226.1| RNA polymerase Rpc34 [Mycosphaerella populorum SO2202]
Length = 396
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSN-LMPTQLNKILKQL 70
L + V+ + +K D +E++VY++IE + GIW++ I+ K N + + KI K L
Sbjct: 78 LGWSVRPREAAKAIKALDKDERMVYEVIEASHTTGIWLKSIKNKLNGIAQPVVAKITKTL 137
Query: 71 ETKKIIKAVKSV 82
E++++IK VKS+
Sbjct: 138 ESQRLIKPVKSI 149
>gi|12850226|dbj|BAB28638.1| unnamed protein product [Mus musculus]
gi|148696515|gb|EDL28462.1| polymerase (RNA) III (DNA directed) polypeptide F, isoform CRA_b
[Mus musculus]
Length = 141
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/34 (61%), Positives = 28/34 (82%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNK 45
LLY++KD K+K SDN+EK+VY+IIE+AGNK
Sbjct: 72 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNK 105
>gi|448117225|ref|XP_004203204.1| Piso0_000805 [Millerozyma farinosa CBS 7064]
gi|359384072|emb|CCE78776.1| Piso0_000805 [Millerozyma farinosa CBS 7064]
Length = 322
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
G L ++ K+ +E ++Y IE +G +GIW + ++ K+NL + + LK
Sbjct: 59 GDELKFQATSMSEASKITSMSEDEAMIYSYIEASGREGIWTKTLKAKTNLHQHIVVRCLK 118
Query: 69 QLETKKIIKAVKSV 82
LE ++ IK++KSV
Sbjct: 119 SLEGQRYIKSIKSV 132
>gi|189208642|ref|XP_001940654.1| DNA-directed rna polymerase III subunit [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187976747|gb|EDU43373.1| DNA-directed rna polymerase III subunit [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 362
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 44/73 (60%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ 69
G+ +K++ +KL+ +E+++Y I++ GIW + +R K+N+ L K LK
Sbjct: 80 GDPCWKLRTREDADKLRRLTPDERLLYHHIDQVQADGIWSKALRNKTNVTQQTLTKCLKS 139
Query: 70 LETKKIIKAVKSV 82
LE+K ++++V SV
Sbjct: 140 LESKDLVQSVMSV 152
>gi|358390496|gb|EHK39901.1| hypothetical protein TRIATDRAFT_295978 [Trichoderma atroviride IMI
206040]
Length = 407
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKV-VYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
G +L+K +D K K +E+V VY +I+++G GIW + ++ + N+ + L +K
Sbjct: 81 GQVLWKWRDKQEAHKYKQCTTDEQVMVYSLIDDSGGDGIWTQTLQKRLNMHDSVLKNAIK 140
Query: 69 QLETKKIIKAVKSV 82
QL+ K +I K+V
Sbjct: 141 QLQAKGLIAPFKNV 154
>gi|326504832|dbj|BAK06707.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326519883|dbj|BAK03866.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 267
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%)
Query: 30 NEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVAN 84
E+ VYK I EAGNKG+W +DIR+ L L K+ + L + I+K V V +
Sbjct: 59 GPEREVYKRIYEAGNKGMWSQDIRYTMKLAAPTLTKLTRALVQRGILKEVTDVRH 113
>gi|449303850|gb|EMC99857.1| hypothetical protein BAUCODRAFT_63420 [Baudoinia compniacensis UAMH
10762]
Length = 377
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 37/51 (72%)
Query: 32 EKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
++++Y+ +E+A KGIW+RD+R +S + ++K + +LE +++K +++V
Sbjct: 77 DRMLYEYVEDAHRKGIWLRDLRKRSGIQGQSVDKAMNRLENARLVKVIRNV 127
>gi|242096318|ref|XP_002438649.1| hypothetical protein SORBIDRAFT_10g023580 [Sorghum bicolor]
gi|241916872|gb|EER90016.1| hypothetical protein SORBIDRAFT_10g023580 [Sorghum bicolor]
Length = 260
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 30 NEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
+E++ YK+I EAGNKG+WM DIR K + P K+++ L + ++K V V
Sbjct: 51 TQERLAYKLIFEAGNKGMWMLDIRKKLLMGPNIATKVVRTLVGRGLLKEVSDV 103
>gi|340924020|gb|EGS18923.1| DNA-directed RNA polymerase III-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 400
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 29 DNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
++E +VY II+EAG GIW R I+ K N+ + + +K LE+K I A+K+V
Sbjct: 94 NDETMMVYSIIDEAGADGIWNRTIKNKLNMHESVVKNCIKYLESKGYITAMKNV 147
>gi|358381396|gb|EHK19071.1| hypothetical protein TRIVIDRAFT_181834 [Trichoderma virens Gv29-8]
Length = 400
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKV-VYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
G +L+K +D K K +E+V VY +I+++G GIW + ++ + N+ + L +K
Sbjct: 81 GQVLWKWRDKQEAHKYKQCTTDEQVMVYSLIDDSGGDGIWTQTLQKRLNMHDSVLKNAIK 140
Query: 69 QLETKKIIKAVKSV 82
QL+ K +I K+V
Sbjct: 141 QLQAKGLIAPFKNV 154
>gi|396459996|ref|XP_003834610.1| similar to DNA-directed RNA polymerase III subunit Rpc34
[Leptosphaeria maculans JN3]
gi|312211160|emb|CBX91245.1| similar to DNA-directed RNA polymerase III subunit Rpc34
[Leptosphaeria maculans JN3]
Length = 363
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 44/73 (60%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ 69
G +K++ +KL+ +E+++Y I++ +GIW + +R ++N+ L K LK
Sbjct: 79 GEPCWKLRSRSDADKLRRLTADERLLYHHIDQVQAEGIWSKALRSRTNVTQQVLTKCLKS 138
Query: 70 LETKKIIKAVKSV 82
LE+K ++++V SV
Sbjct: 139 LESKDLVQSVMSV 151
>gi|317106726|dbj|BAJ53222.1| JHL06P13.1 [Jatropha curcas]
Length = 235
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 15 KVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKK 74
K K P +N + E+ +Y I + GIW RD++ ++NL T +NK LK L+ K
Sbjct: 8 KRKQPESNSSAQSLTEHEQALYNAIRSKQDMGIWTRDMKRETNLPDTVVNKSLKVLQAKN 67
Query: 75 IIKAVKSVAN 84
+IK V ++ N
Sbjct: 68 LIKEVVNIQN 77
>gi|380480792|emb|CCF42228.1| RNA polymerase Rpc34 subunit [Colletotrichum higginsianum]
Length = 394
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 35/55 (63%)
Query: 28 SDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
S +E+++VY I+EAG GIW + I+ + N+ + L LKQL+ K +I K+V
Sbjct: 101 STDEQRMVYGAIDEAGGDGIWSKSIQNRLNMHDSVLKTALKQLQGKGLIAPFKNV 155
>gi|310790201|gb|EFQ25734.1| RNA polymerase Rpc34 subunit [Glomerella graminicola M1.001]
Length = 396
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 35/55 (63%)
Query: 28 SDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
S +E+++VY I+EAG GIW + I+ + N+ + L LKQL+ K +I K+V
Sbjct: 101 STDEQRMVYGAIDEAGGDGIWSKSIQNRLNMHDSVLKTALKQLQGKGLIAPFKNV 155
>gi|389746352|gb|EIM87532.1| hypothetical protein STEHIDRAFT_168250 [Stereum hirsutum FP-91666
SS1]
Length = 544
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ 69
G LLY+ + K EE +V I+ AGN GIW + ++ K+ L T +++ LK
Sbjct: 63 GTLLYRAVQKGEMDLKKGMSGEEDMVLSHIQAAGNLGIWTKHLKAKTELHQTVIDRCLKS 122
Query: 70 LETKKIIK 77
L K+IIK
Sbjct: 123 LTQKQIIK 130
>gi|116181350|ref|XP_001220524.1| hypothetical protein CHGG_01303 [Chaetomium globosum CBS 148.51]
gi|88185600|gb|EAQ93068.1| hypothetical protein CHGG_01303 [Chaetomium globosum CBS 148.51]
Length = 430
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 29 DNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
++E +VY II+EAG GIW R I+ K N+ + +K LETK I ++K+V
Sbjct: 94 NDEAVMVYSIIDEAGADGIWNRTIKNKLNMHEAVVKNCIKFLETKGYIASMKNV 147
>gi|392590466|gb|EIW79795.1| hypothetical protein CONPUDRAFT_144945 [Coniophora puteana
RWD-64-598 SS2]
Length = 562
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 37/57 (64%)
Query: 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
KD EE +V I+ A N+GIW + ++ K+ L T +++ LK L K+++K++K+V
Sbjct: 77 KDMSGEEAMVLGHIKAAANEGIWTKHLKAKTELHQTVIDRCLKSLVQKQLVKSIKAV 133
>gi|403221005|dbj|BAM39138.1| DNA-directed RNA polymerase III [Theileria orientalis strain
Shintoku]
Length = 260
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 16 VKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQL-ETKK 74
++D EKLK + E V+ IE AGNKGIW DIR + L+ Q+ + +K L E +
Sbjct: 44 LRDSYLVEKLKLLQDFEYSVFCTIETAGNKGIWTADIRKITGLLIHQVQRAVKNLCEVAR 103
Query: 75 IIKAVKSVAN 84
+IK + + +
Sbjct: 104 LIKPLTDIHH 113
>gi|302697035|ref|XP_003038196.1| hypothetical protein SCHCODRAFT_46068 [Schizophyllum commune H4-8]
gi|300111893|gb|EFJ03294.1| hypothetical protein SCHCODRAFT_46068 [Schizophyllum commune H4-8]
Length = 483
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 6/85 (7%)
Query: 20 VTNEKL---KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKII 76
VT E++ KD EE +V I+ + N+GIW + ++ K+NL ++K LK L KK+I
Sbjct: 68 VTKEEITVTKDLTAEEGLVLSHIKASKNEGIWTKHLKAKTNLAQALIDKCLKVLTQKKLI 127
Query: 77 KAVKSVANIE---YLTEGTVNAMVL 98
K V+SV + Y+ EG ++ L
Sbjct: 128 KRVQSVQHPTRKIYMLEGVEPSVAL 152
>gi|402083524|gb|EJT78542.1| DNA-directed RNA polymerase III subunit RPC6 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 413
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 34 VVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVAN 84
+VY II+EAG GIW R + + + L + LKQLE+K I +KSV +
Sbjct: 103 LVYSIIDEAGADGIWSRAVLRRLGMHDATLKQALKQLESKGFISEMKSVEH 153
>gi|361124834|gb|EHK96901.1| putative DNA-directed RNA polymerase III subunit rpc6 [Glarea
lozoyensis 74030]
Length = 393
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 36/54 (66%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVAN 84
++++VY +I+E+ +GIW + I+ + NL T L LKQL+ K ++ +KSV N
Sbjct: 122 DQELVYGLIDESEAEGIWHKTIKARLNLHETALTLCLKQLQQKGLVGEMKSVQN 175
>gi|429961896|gb|ELA41440.1| hypothetical protein VICG_01545 [Vittaforma corneae ATCC 50505]
Length = 236
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 7/76 (9%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
G LLYK + + E +V +I ++G+ G+W++DI+ K+N+ + KIL+
Sbjct: 51 GTTLLYKCIQS-------RNSSYEALVLNLIAQSGSSGLWLKDIKNKTNIPHNLILKILR 103
Query: 69 QLETKKIIKAVKSVAN 84
LE + IK++KSV N
Sbjct: 104 VLEETRRIKSIKSVKN 119
>gi|389631391|ref|XP_003713348.1| DNA-directed RNA polymerase III subunit RPC6 [Magnaporthe oryzae
70-15]
gi|351645681|gb|EHA53541.1| DNA-directed RNA polymerase III subunit RPC6 [Magnaporthe oryzae
70-15]
gi|440474129|gb|ELQ42893.1| DNA-directed RNA polymerase III subunit RPC6 [Magnaporthe oryzae
Y34]
gi|440487009|gb|ELQ66821.1| DNA-directed RNA polymerase III subunit RPC6 [Magnaporthe oryzae
P131]
Length = 415
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 30 NEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
+E +VY +I+EAG GIW R I + + L + LKQLE+K I +KSV
Sbjct: 100 SEAMLVYTLIDEAGADGIWSRAILRRLGMHDATLKQALKQLESKGFISEMKSV 152
>gi|336372678|gb|EGO01017.1| hypothetical protein SERLA73DRAFT_167202 [Serpula lacrymans var.
lacrymans S7.3]
Length = 481
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 38/60 (63%)
Query: 23 EKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
E KD EE +V I+ + N+GIW + ++ K+ L T +++ LK L K+++K++K+V
Sbjct: 74 EVKKDMTGEEAMVLSHIQVSANEGIWTKHLKAKTELHQTVIDRCLKSLVQKQLVKSIKAV 133
>gi|399217542|emb|CCF74429.1| unnamed protein product [Babesia microti strain RI]
Length = 296
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 23 EKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQL-ETKKIIKAVKS 81
+KL D D VY IE+AGN GIW DIR + L+ Q+ K +K L E K +IK VK
Sbjct: 87 DKLDDVDYR---VYCAIEQAGNVGIWTADIRKFTGLLIHQVQKAIKMLAEEKGLIKPVKD 143
Query: 82 VAN 84
+ +
Sbjct: 144 IHH 146
>gi|225442989|ref|XP_002266428.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Vitis vinifera]
Length = 239
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 11 NLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQL 70
L K K P TN + + E+V+Y +I + GIW RD++ ++NL + K LK L
Sbjct: 6 GLSLKRKRPDTNAASQPLLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDNVVTKSLKAL 65
Query: 71 ETKKIIKAV 79
+ KK+IK V
Sbjct: 66 QVKKLIKEV 74
>gi|357123938|ref|XP_003563664.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like
[Brachypodium distachyon]
Length = 258
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 19 PVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKA 78
P++ L + E+ VYK + AGNKGIW +D+R L + K+ + L + I+K
Sbjct: 39 PISAAILNNLPGPEREVYKRVYAAGNKGIWSQDLRHSMQLAAPTVTKLTRALVQRGILKE 98
Query: 79 VKSV 82
V V
Sbjct: 99 VTDV 102
>gi|392558473|gb|EIW51661.1| hypothetical protein TRAVEDRAFT_137014 [Trametes versicolor
FP-101664 SS1]
Length = 423
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 11/93 (11%)
Query: 1 MLANGFLIGGNLLYKVKD--------PVTNEKL---KDSDNEEKVVYKIIEEAGNKGIWM 49
+ A FL+G L +K V+ E+L K D+EE +V I AG +GIW
Sbjct: 41 LAAINFLLGTGLFVLLKGEQSQITYRAVSQEELSLKKGLDSEEGLVLDRIRTAGVEGIWT 100
Query: 50 RDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
+ I+ K+ L T +++ LK L +++IK V V
Sbjct: 101 KHIKAKTQLHQTVVDRCLKSLTKRQLIKTVPDV 133
>gi|296087021|emb|CBI33284.3| unnamed protein product [Vitis vinifera]
Length = 300
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 15 KVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKK 74
K K P TN + + E+V+Y +I + GIW RD++ ++NL + K LK L+ KK
Sbjct: 71 KRKRPDTNTASQPLLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDNVVTKSLKALQVKK 130
Query: 75 IIKAV 79
+IK V
Sbjct: 131 LIKEV 135
>gi|118352502|ref|XP_001009522.1| RNA polymerase Rpc34 subunit family protein [Tetrahymena
thermophila]
gi|89291289|gb|EAR89277.1| RNA polymerase Rpc34 subunit family protein [Tetrahymena
thermophila SB210]
Length = 286
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 1 MLANGFL----IGGNLLYKVKDPVTNEKL----KDSDNEEKVVYKIIEEAGNKGIWMRDI 52
+L G+L +G + + DP ++L D +E VYKII +A NKGI +DI
Sbjct: 43 LLKEGYLTCTNVGNEQIVEYHDPQDQKQLNVAASDLPQQEFQVYKIIFQAKNKGIDRKDI 102
Query: 53 RFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
K+ + L KIL QL+ K IK+VK
Sbjct: 103 GNKTGIATGTLTKILNQLKKKNWIKSVKGA 132
>gi|359497031|ref|XP_003635403.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Vitis vinifera]
Length = 239
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 15 KVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKK 74
K K P TN + + E+V+Y +I + GIW RD++ ++NL + K LK L+ KK
Sbjct: 10 KRKRPDTNTASQPLLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDNVVTKSLKALQVKK 69
Query: 75 IIKAV 79
+IK V
Sbjct: 70 LIKEV 74
>gi|224142730|ref|XP_002324707.1| predicted protein [Populus trichocarpa]
gi|222866141|gb|EEF03272.1| predicted protein [Populus trichocarpa]
Length = 239
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 15 KVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKK 74
K K P N + E+++Y +I + GIW RD++ ++ L +NK LK L+ KK
Sbjct: 11 KRKRPEVNSPAQSLTEHERLLYDVIRSKQDIGIWTRDMKKEAKLPDNVVNKSLKALQVKK 70
Query: 75 IIKAVKSVAN 84
+IK V ++ N
Sbjct: 71 LIKEVVNIQN 80
>gi|359497533|ref|XP_003635557.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Vitis vinifera]
Length = 239
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%)
Query: 15 KVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKK 74
K K P TN + + E+V+Y +I + GIW RD++ ++NL + K LK L+ KK
Sbjct: 10 KRKRPDTNTASQPLLDAERVLYDLIRSKEDMGIWTRDMKRETNLPDNVVTKSLKALQVKK 69
Query: 75 IIKAV 79
+IK V
Sbjct: 70 LIKEV 74
>gi|367019296|ref|XP_003658933.1| hypothetical protein MYCTH_2295366 [Myceliophthora thermophila ATCC
42464]
gi|347006200|gb|AEO53688.1| hypothetical protein MYCTH_2295366 [Myceliophthora thermophila ATCC
42464]
Length = 425
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 29 DNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
++E +VY II+EAG GIW R I+ K N+ + +K LE+K I ++K+V
Sbjct: 94 NDETVMVYSIIDEAGADGIWNRTIKNKLNMHEAVVKNCIKFLESKGYIASMKNV 147
>gi|367053057|ref|XP_003656907.1| hypothetical protein THITE_2122199 [Thielavia terrestris NRRL 8126]
gi|347004172|gb|AEO70571.1| hypothetical protein THITE_2122199 [Thielavia terrestris NRRL 8126]
Length = 376
Score = 43.1 bits (100), Expect = 0.020, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 29 DNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
++E +VY II+EAG GIW R I+ + N+ + +K LE+K I ++K+V
Sbjct: 94 NDETVMVYSIIDEAGADGIWNRTIKNRLNMHEAVVKSCIKFLESKGYIASMKNV 147
>gi|291001191|ref|XP_002683162.1| predicted protein [Naegleria gruberi]
gi|284096791|gb|EFC50418.1| predicted protein [Naegleria gruberi]
Length = 245
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%)
Query: 6 FLIGGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNK 65
F +G N++++ + K K +E+ +Y++IE +GNKGIW + I K+ L K
Sbjct: 16 FKVGKNIIFQHVSKEDSVKYKGLTDEQIGIYQMIELSGNKGIWKKSISKKAKKNEKDLEK 75
Query: 66 ILKQLETKKIIKAVKSVA 83
ILK LE+K++I+ + +
Sbjct: 76 ILKALESKQLIRKISDIT 93
>gi|357502651|ref|XP_003621614.1| DNA-directed RNA polymerase III subunit RPC6 [Medicago
truncatula]
gi|355496629|gb|AES77832.1| DNA-directed RNA polymerase III subunit RPC6 [Medicago
truncatula]
Length = 456
Score = 42.7 bits (99), Expect = 0.025, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 23 EKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
+KL EE+++Y +I N GI D+R ++NL LNK +K L K ++K + S+
Sbjct: 17 QKLSALPTEERILYDLILSKENSGISKTDMRRETNLPIAALNKHMKALMNKSMVKELPSI 76
Query: 83 AN 84
N
Sbjct: 77 KN 78
>gi|330927997|ref|XP_003302086.1| hypothetical protein PTT_13779 [Pyrenophora teres f. teres 0-1]
gi|311322744|gb|EFQ89810.1| hypothetical protein PTT_13779 [Pyrenophora teres f. teres 0-1]
Length = 400
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
+E+++Y I++ GIW + +R K+N+ L K LK LE K ++++V SV
Sbjct: 126 DERLLYHHIDQVQADGIWSKALRNKTNVTQQTLTKCLKSLEAKDLVQSVMSV 177
>gi|67623655|ref|XP_668110.1| DNA-directed RNA polymerases iii 39 Kd polypeptide [Cryptosporidium
hominis TU502]
gi|54659309|gb|EAL37892.1| DNA-directed RNA polymerases iii 39 Kd polypeptide [Cryptosporidium
hominis]
Length = 319
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK-KIIKAVKSV 82
KL NEE +V+ IE+AGN+GIW DIR + L + + +K L +I+ VKS+
Sbjct: 91 KLNKLSNEEYIVFCSIEDAGNQGIWTADIRKNTGLQTHVVQRAVKLLCNDWNLIRPVKSI 150
>gi|171695538|ref|XP_001912693.1| hypothetical protein [Podospora anserina S mat+]
gi|170948011|emb|CAP60175.1| unnamed protein product [Podospora anserina S mat+]
Length = 403
Score = 42.4 bits (98), Expect = 0.040, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 7 LIGGNLLYKVKDPVTNEKLKD-SDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNK 65
L GG L +K + +K D ++VY I++AG G+W+R I+ + N+ L
Sbjct: 71 LPGGELGWKWRSREDAKKYTSLPDEPTRLVYGEIDQAGQDGVWIRHIKLRINIQDATLKA 130
Query: 66 ILKQLETKKIIKAVKSV 82
+K LE+K I ++ +V
Sbjct: 131 CIKFLESKGFISSMTNV 147
>gi|403418720|emb|CCM05420.1| predicted protein [Fibroporia radiculosa]
Length = 494
Score = 42.0 bits (97), Expect = 0.050, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 12/93 (12%)
Query: 1 MLANGFLIGGNLLYKVKD--------PVTNEKL---KDSDNEEKVVYKIIEEAGNKGIWM 49
M A FL+G L +KD V +++ KD EE +V I+ +GN+G
Sbjct: 41 MEAINFLLGTGLFKAMKDTKGIVSFRAVMKKEMEVKKDMSGEESMVLSHIQVSGNEGKAP 100
Query: 50 RDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
RD K+ L T +++ LK L K++IKAVKSV
Sbjct: 101 RD-HAKTELHQTVIDRCLKSLVQKQLIKAVKSV 132
>gi|224052869|ref|XP_002297621.1| predicted protein [Populus trichocarpa]
gi|222844879|gb|EEE82426.1| predicted protein [Populus trichocarpa]
Length = 239
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 15 KVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKK 74
K K P N ++ E+++Y +I + GIW RD++ ++ L +NK LK L K
Sbjct: 11 KRKRPELNSPVQSLTEHERILYDVIRSKQDIGIWTRDMKKEAKLPDNVVNKSLKALRVKN 70
Query: 75 IIKAVKSVAN 84
+IK V ++ N
Sbjct: 71 LIKEVVNIQN 80
>gi|401412778|ref|XP_003885836.1| putative DNA-directed RNA polymerases III, 39 kDa polypeptide
[Neospora caninum Liverpool]
gi|325120256|emb|CBZ55810.1| putative DNA-directed RNA polymerases III, 39 kDa polypeptide
[Neospora caninum Liverpool]
Length = 311
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQL-ETKKIIKAVKSV 82
KLK D + VY IE+AG G+W D+R + L + + +KQL + K+IK VKS+
Sbjct: 86 KLKTLDAFDYKVYCAIEQAGTTGVWTADLRKSTGLQTHIIQRSVKQLCDFLKLIKPVKSI 145
>gi|66475946|ref|XP_627789.1| RNA polymerase III C34 subunit; rpc34p ortholog [Cryptosporidium
parvum Iowa II]
gi|32399034|emb|CAD98274.1| DNA-directed RNA polymerases iii 39 Kd polypeptide, possible
[Cryptosporidium parvum]
gi|46229200|gb|EAK90049.1| RNA polymerase III C34 subunit; rpc34p ortholog [Cryptosporidium
parvum Iowa II]
gi|323508939|dbj|BAJ77362.1| cgd6_4580 [Cryptosporidium parvum]
gi|323510447|dbj|BAJ78117.1| cgd6_4580 [Cryptosporidium parvum]
Length = 319
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK-KIIKAVKSV 82
KL NEE +V+ IE+AGN+GIW DIR + L + + +K L +I+ VKS+
Sbjct: 91 KLNKLSNEEYLVFCSIEDAGNQGIWTADIRKNTGLQTHVVQRAVKVLCNDWNLIRPVKSI 150
>gi|255536881|ref|XP_002509507.1| DNA-directed RNA polymerase III subunit F, putative [Ricinus
communis]
gi|223549406|gb|EEF50894.1| DNA-directed RNA polymerase III subunit F, putative [Ricinus
communis]
Length = 236
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%)
Query: 15 KVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKK 74
K K P ++ + E +Y +I + GIW RD++ ++NL +NK LK L+ K
Sbjct: 8 KRKQPESSSPAQSLTEHECTLYNVIWSKQDMGIWTRDMKRETNLPDNVVNKSLKVLQAKN 67
Query: 75 IIKAVKSVAN 84
+IK V ++ N
Sbjct: 68 LIKEVVNIQN 77
>gi|237844055|ref|XP_002371325.1| DNA-directed RNA polymerases III, 39 kDa polypeptide, putative
[Toxoplasma gondii ME49]
gi|211968989|gb|EEB04185.1| DNA-directed RNA polymerases III, 39 kDa polypeptide, putative
[Toxoplasma gondii ME49]
gi|221485540|gb|EEE23821.1| DNA-directed RNA polymerases III, 39 kDa polypeptide, putative
[Toxoplasma gondii GT1]
gi|221506390|gb|EEE32025.1| DNA-directed RNA polymerases III, 39 kDa polypeptide, putative
[Toxoplasma gondii VEG]
Length = 325
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQL-ETKKIIKAVKSV 82
KLK D + VY IE+AG G+W D+R + L + + +KQL + K+IK VKS+
Sbjct: 94 KLKTLDAFDYKVYCAIEQAGTTGVWTADLRKSTGLQTHIIQRSVKQLCDFLKLIKPVKSI 153
>gi|156087256|ref|XP_001611035.1| RNA polymerase rpc34 subunit containing protein [Babesia bovis
T2Bo]
gi|154798288|gb|EDO07467.1| RNA polymerase rpc34 subunit containing protein [Babesia bovis]
Length = 293
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 15 KVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ-LETK 73
K++D V+ +++ + E V+ IE AG++GIW DI+ + QL + LK LE
Sbjct: 75 KLRDSVSRQQVSRLHDLEYAVFCAIETAGDRGIWTADIKKICEITGNQLTRSLKVLLEQH 134
Query: 74 KIIKAVKSV 82
++K V +V
Sbjct: 135 GLVKQVTNV 143
>gi|356530565|ref|XP_003533851.1| PREDICTED: probable DNA-directed RNA polymerase III subunit
RPC6-like [Glycine max]
Length = 237
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 29 DNEEKVVYKIIEEAGNKGIWMRDIRFKSNL-MP-TQLNKILKQLETKKIIKAVKSVAN 84
+NEE+ VY II E GIW DI+ + N+ +P + L K LK L TK +IK V +V N
Sbjct: 23 NNEERAVYTIIRERKEMGIWQGDIKREKNIHIPDSLLKKTLKMLITKNLIKEVVNVHN 80
>gi|85112653|ref|XP_964380.1| hypothetical protein NCU00727 [Neurospora crassa OR74A]
gi|28926160|gb|EAA35144.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 410
Score = 41.2 bits (95), Expect = 0.077, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 29 DNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
++E +VY +++EAG GIW R I+ K N+ + + +K LE K I ++K+V
Sbjct: 87 NSEIMMVYAMVDEAGADGIWNRTIKNKLNMADSLMKHCIKYLEQKGYIASMKNV 140
>gi|336463706|gb|EGO51946.1| hypothetical protein NEUTE1DRAFT_89784 [Neurospora tetrasperma FGSC
2508]
Length = 398
Score = 41.2 bits (95), Expect = 0.080, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 29 DNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
++E +VY +++EAG GIW R I+ K N+ + + +K LE K I ++K+V
Sbjct: 87 NSEIMMVYAMVDEAGADGIWNRTIKNKLNMADSLMKHCIKYLEQKGYIASMKNV 140
>gi|350295771|gb|EGZ76748.1| RNA polymerase Rpc34 [Neurospora tetrasperma FGSC 2509]
Length = 399
Score = 41.2 bits (95), Expect = 0.081, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 29 DNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
++E +VY +++EAG GIW R I+ K N+ + + +K LE K I ++K+V
Sbjct: 87 NSEIMMVYAMVDEAGADGIWNRTIKNKLNMADSLMKHCIKYLEQKGYIASMKNV 140
>gi|336275631|ref|XP_003352569.1| hypothetical protein SMAC_01403 [Sordaria macrospora k-hell]
gi|380094459|emb|CCC07838.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 411
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%)
Query: 34 VVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVAN 84
+VY +++EAG GIW R I+ K N+ + + + +K LE K I ++K+V +
Sbjct: 92 MVYAMVDEAGADGIWNRTIKNKLNMADSLMKQCIKYLEQKGYIASMKNVEH 142
>gi|356522416|ref|XP_003529842.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Glycine max]
Length = 229
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 29 DNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVAN 84
+NEE VY II GIW DI+ ++N+ + L K +K L TKK++K V +V N
Sbjct: 23 NNEEGRVYNIIRGRKEMGIWQGDIKREANIPDSLLKKSIKMLITKKLVKEVVNVQN 78
>gi|224134951|ref|XP_002327530.1| predicted protein [Populus trichocarpa]
gi|222836084|gb|EEE74505.1| predicted protein [Populus trichocarpa]
Length = 127
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 30 NEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVAN 84
+ E+ +Y +I + GIW RD++ ++NL +NK LK L K +IK V ++ N
Sbjct: 27 DHERKLYDVIRSKKDMGIWTRDMKKETNLPDNVVNKSLKALHAKNLIKEVVNIQN 81
>gi|256086074|ref|XP_002579231.1| rna polymerase III (DNA directed) 39kD subunit-related [Schistosoma
mansoni]
gi|353228962|emb|CCD75133.1| rna polymerase III (DNA directed), 39kD subunit-related
[Schistosoma mansoni]
Length = 305
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 11 NLLYKVKDPVTNEKLKD-SDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ 69
L ++++D + EKLK SD EE++VY I AG ++ I ++ L ++ +ILK
Sbjct: 62 TLSWQLRDQDSTEKLKSLSDLEERLVYNAIRNAGEDAASLKLISSETKLPQNRIPRILKS 121
Query: 70 LETKKIIKAV 79
L +KK+IK V
Sbjct: 122 LISKKMIKEV 131
>gi|51090893|dbj|BAD35466.1| unknown protein [Oryza sativa Japonica Group]
gi|125597789|gb|EAZ37569.1| hypothetical protein OsJ_21900 [Oryza sativa Japonica Group]
gi|215717140|dbj|BAG95503.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765565|dbj|BAG87262.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 260
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 30 NEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
E+ +YK++ G+KG+ +IR K+ + + L K L+ L +K ++K V SV
Sbjct: 52 QHERPIYKLVFAGGDKGMSQTEIRIKTGMPTSTLTKHLRGLTSKGVLKVVNSV 104
>gi|440491159|gb|ELQ73828.1| RNA polymerase III, subunit C34 [Trachipleistophora hominis]
Length = 235
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 40/60 (66%)
Query: 25 LKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVAN 84
+++++++EK V +++++ +G +RDIR + L + KIL++++ K++KAVK N
Sbjct: 59 VRNTEDDEKSVLDVLKKSKGQGCTIRDIRLTTKLSQNLITKILRKMQDMKMVKAVKGQKN 118
>gi|346971954|gb|EGY15406.1| DNA-directed RNA polymerase III subunit RPC6 [Verticillium dahliae
VdLs.17]
Length = 393
Score = 38.9 bits (89), Expect = 0.35, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 34/55 (61%)
Query: 28 SDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
+ +E+++VY +I++AG GIW + I + ++ T + +KQL K +I K+V
Sbjct: 102 TTDEQRMVYGMIDDAGGDGIWSKTIINRLSMNDTVMKAAIKQLHIKGLIVPFKNV 156
>gi|302404176|ref|XP_002999926.1| DNA-directed RNA polymerase III subunit RPC6 [Verticillium
albo-atrum VaMs.102]
gi|261361428|gb|EEY23856.1| DNA-directed RNA polymerase III subunit RPC6 [Verticillium
albo-atrum VaMs.102]
Length = 390
Score = 38.9 bits (89), Expect = 0.38, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 34/55 (61%)
Query: 28 SDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
+ +E+++VY +I++AG GIW + I + ++ T + +KQL K +I K+V
Sbjct: 102 TTDEQRMVYGMIDDAGGDGIWSKTIINRLSMNDTVMKAAIKQLHIKGLIVPFKNV 156
>gi|388504992|gb|AFK40562.1| unknown [Lotus japonicus]
Length = 232
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAV 79
K D + E VVYK+I N GIW+ DI+ ++ + + K +K L+ K ++K V
Sbjct: 13 KRPDLTDGEDVVYKLIHSKENMGIWIADIKRETKMPDNMVKKCIKSLQDKNLVKEV 68
>gi|429966147|gb|ELA48144.1| hypothetical protein VCUG_00382 [Vavraia culicis 'floridensis']
Length = 229
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 41/60 (68%)
Query: 25 LKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVAN 84
+++++++E+ V + +++A N+G +RDIR + L ++KIL++++ K++KA K N
Sbjct: 53 VRNAEDDERSVLEQLKKATNQGCTIRDIRLATKLPQNLVSKILRKMQDMKVVKAFKGQKN 112
>gi|209882502|ref|XP_002142687.1| DNA-directed RNA polymerase III subunit RPC6 [Cryptosporidium muris
RN66]
gi|209558293|gb|EEA08338.1| DNA-directed RNA polymerase III subunit RPC6, putative
[Cryptosporidium muris RN66]
Length = 312
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 7 LIGGN----LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQ 62
L GN + + ++ + KL +E VY IE AGN+GIW DIR + L
Sbjct: 62 LTSGNNQNKVFFILRSEIIASKLNKLTPDEYQVYCCIENAGNQGIWTADIRKVTGLQTHI 121
Query: 63 LNKILKQLETK-KIIKAVKSV 82
+ + +K L + +IK +KS+
Sbjct: 122 VQRAVKLLCNELNLIKPIKSI 142
>gi|406865342|gb|EKD18384.1| DNA-directed RNA polymerase III subunit RPC6 [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 358
Score = 38.1 bits (87), Expect = 0.63, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
E+++VY I+EA G W + I+ +SNL + +K L + +I +KSV
Sbjct: 94 EQEIVYMQIDEAAADGAWSKIIKNRSNLHDSLFQSAIKHLRARNLITEMKSV 145
>gi|356567166|ref|XP_003551792.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Glycine max]
Length = 239
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 32 EKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVAN 84
E+V+Y +I + GIW D++ ++NL + + K LK L++K +IK V ++ N
Sbjct: 28 ERVLYNLIHSKKDMGIWTGDMKRETNLPDSIVKKSLKLLQSKNLIKEVVNIQN 80
>gi|56756084|gb|AAW26220.1| SJCHGC02354 protein [Schistosoma japonicum]
Length = 305
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 11 NLLYKVKDPVTNEKLKD-SDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ 69
L + ++D + E LK SD EE++VY I AG + ++ I ++ L ++ +ILK
Sbjct: 62 TLSWLLRDQKSTETLKSLSDLEERLVYNAIRNAGEEAASLKLISSETKLPQNRIPRILKS 121
Query: 70 LETKKIIKAV 79
L +KK+IK V
Sbjct: 122 LISKKMIKEV 131
>gi|170106545|ref|XP_001884484.1| O-methyltransferase [Laccaria bicolor S238N-H82]
gi|164640830|gb|EDR05094.1| O-methyltransferase [Laccaria bicolor S238N-H82]
Length = 471
Score = 38.1 bits (87), Expect = 0.76, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 32 EKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80
E V +I+ EAG G+ +RDI KSN+ T+L ++++ L T + K ++
Sbjct: 93 EANVTEILREAGPSGLHVRDIAAKSNISSTKLARLMRYLATHHVYKELQ 141
>gi|401888712|gb|EJT52664.1| DNA-directed RNA polymerase iii 34 kda polypeptide [Trichosporon
asahii var. asahii CBS 2479]
gi|406696770|gb|EKD00046.1| DNA-directed RNA polymerase iii 34 kda polypeptide [Trichosporon
asahii var. asahii CBS 8904]
Length = 568
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDI--RFKSNLMP-TQLNKILKQLETKKIIKAVKSV 82
E++ V I+E+AGNKGI I + +MP +Q+NK L+ LE ++K KSV
Sbjct: 70 EQQFVLSIVEKAGNKGISRPSISNQIPPEVMPRSQVNKALEALEKNMLVKTFKSV 124
>gi|71033063|ref|XP_766173.1| RNA polymerase subunit [Theileria parva strain Muguga]
gi|68353130|gb|EAN33890.1| RNA polymerase subunit, putative [Theileria parva]
Length = 295
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQL-ETKKIIKAVKSV 82
KLKD D + ++ IE AGNKGIW DIR L Q+ + +K L E+ ++I+ + V
Sbjct: 86 KLKDIDYK---IFCTIETAGNKGIWTADIRKILGLHINQVQRGVKYLYESNRLIRPITDV 142
>gi|219116534|ref|XP_002179062.1| diatom PHytochrome 1 [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409829|gb|EEC49760.1| diatom PHytochrome 1 [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1010
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 11 NLLYKVKDPVTNEKLKDSDNEEKVVYKIIE----EAGNKGIWMRDIRFKSNLMPTQLNKI 66
NLL + D N+ L ++KV+Y+ + + R I +S++ P L K+
Sbjct: 632 NLLNDILDISKNKHLSHISAQDKVIYQTLAFETIDCMKSLATSRKIEMRSSIEPKGLEKV 691
Query: 67 LKQLETKKIIKAVKSVAN--IEYLTEGTVNAM 96
+ + KII+ V +V N I++ EGTV+ +
Sbjct: 692 VIVTDRTKIIQIVSNVVNNAIKFTGEGTVDVV 723
>gi|82754289|gb|ABB89942.1| phytochrome-like protein [Phaeodactylum tricornutum]
Length = 1010
Score = 37.0 bits (84), Expect = 1.4, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 11 NLLYKVKDPVTNEKLKDSDNEEKVVYKIIE----EAGNKGIWMRDIRFKSNLMPTQLNKI 66
NLL + D N+ L ++KV+Y+ + + R I +S++ P L K+
Sbjct: 632 NLLNDILDISKNKHLSHISAQDKVIYQTLAFETIDCMKSLATSRKIEMRSSIEPKGLEKV 691
Query: 67 LKQLETKKIIKAVKSVAN--IEYLTEGTVNAM 96
+ + KII+ V +V N I++ EGTV+ +
Sbjct: 692 VIVTDRTKIIQIVSNVVNNAIKFTGEGTVDVV 723
>gi|336372675|gb|EGO01014.1| hypothetical protein SERLA73DRAFT_159591 [Serpula lacrymans var.
lacrymans S7.3]
gi|336385533|gb|EGO26680.1| hypothetical protein SERLADRAFT_414613 [Serpula lacrymans var.
lacrymans S7.9]
Length = 467
Score = 35.8 bits (81), Expect = 3.0, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 32 EKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAV 79
E +I+ EAG +G+ ++DI K+N+ T+L++ L+ L T I K V
Sbjct: 93 ETNTVEILREAGPQGLHVKDIASKANVDSTKLSRFLRYLATYHIFKEV 140
>gi|449542502|gb|EMD33481.1| hypothetical protein CERSUDRAFT_87325 [Ceriporiopsis subvermispora
B]
Length = 471
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 32 EKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAV 79
E +I+ EAG +G+ + DI K+N+ P +L ++L+ L T I K V
Sbjct: 96 ETNTVEILREAGVQGLHVNDIAAKNNVDPIKLGRLLRFLATSHIFKEV 143
>gi|313224681|emb|CBY20472.1| unnamed protein product [Oikopleura dioica]
Length = 301
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ 69
G++ Y KD +T + E+ VY++I E N G+ +I + ++ L + L +
Sbjct: 74 GSMTYSYKDEITIPSTVSA--TEEPVYRLIAEGKNMGVLKSEIMAQVDVKKRDLTRTLAE 131
Query: 70 LETKKIIKAVKSVANIEYLTEGTVNAMV 97
E KK+IK V S +L + T + V
Sbjct: 132 FERKKLIKKVGSPKQKYFLYDVTPDHTV 159
>gi|302845389|ref|XP_002954233.1| hypothetical protein VOLCADRAFT_118667 [Volvox carteri f.
nagariensis]
gi|300260438|gb|EFJ44657.1| hypothetical protein VOLCADRAFT_118667 [Volvox carteri f.
nagariensis]
Length = 271
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 13/61 (21%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83
K K EE ++Y+ I+ AGN G MP + KILK LE+++++K+VK+V
Sbjct: 74 KFKGLSTEELLLYQCIKAAGNTG------------MPG-ITKILKVLESRRLVKSVKNVN 120
Query: 84 N 84
N
Sbjct: 121 N 121
>gi|428672752|gb|EKX73665.1| DNA-directed RNA polymerase III, putative [Babesia equi]
Length = 295
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 16 VKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNL-MPTQLNKILKQL-ETK 73
++D T +L+ E VY ++E AGNK IW DI+ + L + + +I K L E
Sbjct: 74 LRDQETINQLQKLQPAEYSVYCLVETAGNKSIWSADIKRITGLSVSLMVQRITKNLSEGL 133
Query: 74 KIIKAVKSV 82
++IK V+S+
Sbjct: 134 RLIKPVRSI 142
>gi|188584785|ref|YP_001916330.1| transcriptional repressor CtsR [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179349472|gb|ACB83742.1| transcriptional repressor, CtsR [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 154
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 28 SDNEEKVVYKIIEEAGNKGIWMR--DIRFKSNLMPTQLNKIL 67
SDN EK + +IEE+ NK I ++ D+ +K N +P+Q+N +L
Sbjct: 5 SDNIEKYLKNLIEESPNKAIVVKRCDLAYKFNCVPSQINYVL 46
>gi|258597706|ref|XP_001348381.2| RNA polymerase subunit, putative [Plasmodium falciparum 3D7]
gi|255528800|gb|AAN36820.2| RNA polymerase subunit, putative [Plasmodium falciparum 3D7]
Length = 311
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 41/68 (60%)
Query: 15 KVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKK 74
++++ +KLK+ + + +++ +E + N GIW D+R ++ L+ Q+ K +K L K
Sbjct: 70 RMRNEQVTKKLKELSDIDFLIFTKVENSQNNGIWTADLRKQTKLLIHQVQKGVKLLCENK 129
Query: 75 IIKAVKSV 82
+IK V ++
Sbjct: 130 LIKQVNNI 137
>gi|339240557|ref|XP_003376204.1| RNA polymerase Rpc34 subunit family protein [Trichinella spiralis]
gi|316975092|gb|EFV58551.1| RNA polymerase Rpc34 subunit family protein [Trichinella spiralis]
Length = 237
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 9 GGNLLYK-VKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNK 65
G + YK + + + + D EK++Y++I +A N GIW+ D++ KSN+ +L K
Sbjct: 107 GNEIYYKFISESAVVDSMIPLDPLEKLLYQLIADAKNMGIWIGDLKTKSNIPHRRLMK 164
>gi|393214237|gb|EJC99730.1| S-adenosyl-L-methionine-dependent methyltransferase [Fomitiporia
mediterranea MF3/22]
Length = 470
Score = 35.4 bits (80), Expect = 4.2, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAV 79
E V +II AG KG+ + +I KSN+ P +L +IL+ L T K V
Sbjct: 95 ERANVAEIIRSAGPKGLHVNEIASKSNIDPKKLARILRFLATNHWFKEV 143
>gi|187764105|ref|YP_001876554.1| NADH dehydrogenase subunit 11 [Dictyostelium fasciculatum]
gi|160688813|gb|ABX45228.1| NADH dehydrogenase subunit 11 [Dictyostelium fasciculatum]
Length = 682
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 49/81 (60%), Gaps = 8/81 (9%)
Query: 6 FLIGGNLLYKVKDPVTNEKLKDSD-NEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLN 64
FLIG NL +V+ P+ N +L++ + NEE+V K I GNK W D ++ + ++++
Sbjct: 381 FLIGSNL--RVESPLLNIRLRNLNFNEEQVKSKKIIILGNKFFWKADSKY----IGSKIS 434
Query: 65 KILKQLETK-KIIKAVKSVAN 84
+LK LE + +I K++ + N
Sbjct: 435 TLLKVLEGRHEICKSLSTAKN 455
>gi|156102106|ref|XP_001616746.1| DNA-directed RNA polymerases III 39 kDa polypeptide [Plasmodium
vivax Sal-1]
gi|148805620|gb|EDL47019.1| DNA-directed RNA polymerases III 39 kDa polypeptide, putative
[Plasmodium vivax]
Length = 303
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
KLK+ + + +++ +E + N GIW D+R ++ L+ Q+ K +K L K+IK V ++
Sbjct: 87 KLKELSDIDFLIFTKVENSQNNGIWTADLRKQTKLLIHQVQKGVKLLCECKLIKQVNNI 145
>gi|405121157|gb|AFR95926.1| DNA-directed RNA polymerase III 34 kda polypeptide [Cryptococcus
neoformans var. grubii H99]
Length = 561
Score = 35.0 bits (79), Expect = 5.8, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDI--RFKSNLMP-TQLNKILK 68
++Y + P ++ E+ ++ II AGN+GI I ++ MP + L K+LK
Sbjct: 65 MVYHAQTPEEAKQKATLTQEQSIILSIIRSAGNRGIASAQITRTIGTDTMPISMLRKVLK 124
Query: 69 QLETKKIIKAVKSV 82
LE++ IK K V
Sbjct: 125 TLESEGHIKQFKPV 138
>gi|321259858|ref|XP_003194649.1| DNA-directed RNA polymerase iii 34 kDa polypeptide [Cryptococcus
gattii WM276]
gi|317461121|gb|ADV22862.1| DNA-directed RNA polymerase iii 34 kDa polypeptide, putative
[Cryptococcus gattii WM276]
Length = 557
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDI--RFKSNLMP-TQLNKILK 68
++Y P ++ E+ ++ II AGN+GI I ++ MP + L K+LK
Sbjct: 65 MVYHAHTPEEAKQKATLTQEQSIILSIIRSAGNRGIASAQITRTIGTDTMPISMLRKVLK 124
Query: 69 QLETKKIIKAVKSV 82
LE++ IK K V
Sbjct: 125 TLESEGHIKQFKPV 138
>gi|393214736|gb|EJD00229.1| S-adenosyl-L-methionine-dependent methyltransferase [Fomitiporia
mediterranea MF3/22]
Length = 466
Score = 35.0 bits (79), Expect = 6.0, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 28/39 (71%)
Query: 35 VYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK 73
V +I+ +AG +G+ + +I KSN+ P +L++IL+ L T+
Sbjct: 99 VAEILRDAGPEGLHINEIAAKSNMQPQKLSRILRYLATE 137
>gi|58268956|ref|XP_571634.1| DNA-directed RNA polymerase iii 34 kda polypeptide [Cryptococcus
neoformans var. neoformans JEC21]
gi|134112798|ref|XP_774942.1| hypothetical protein CNBF1070 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257590|gb|EAL20295.1| hypothetical protein CNBF1070 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227869|gb|AAW44327.1| DNA-directed RNA polymerase iii 34 kda polypeptide, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 559
Score = 35.0 bits (79), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDI--RFKSNLMP-TQLNKILK 68
++Y + P ++ E+ ++ II AGN+GI I ++ MP + L K+LK
Sbjct: 65 MVYHAQTPEEAKQKATLTQEQSIILSIIRSAGNRGIASAQITRTIGTDTMPISMLRKVLK 124
Query: 69 QLETKKIIKAVKSV 82
LE++ IK K V
Sbjct: 125 TLESEGHIKQFKPV 138
>gi|221060302|ref|XP_002260796.1| RNA polymerase subunit [Plasmodium knowlesi strain H]
gi|193810870|emb|CAQ42768.1| RNA polymerase subunit, putative [Plasmodium knowlesi strain H]
Length = 301
Score = 35.0 bits (79), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
KLK+ + + +++ +E + N GIW D+R ++ L+ Q+ K +K L K+IK V ++
Sbjct: 69 KLKELSDIDFLIFTKVENSQNNGIWTADLRKQTKLLIHQVQKGVKLLCECKLIKQVNNI 127
>gi|389585754|dbj|GAB68484.1| DNA-directed RNA polymerases III 39 kDa polypeptide, partial
[Plasmodium cynomolgi strain B]
Length = 286
Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
KLK+ + + +++ +E + N GIW D+R ++ L+ Q+ K +K L K+IK V ++
Sbjct: 79 KLKELSDIDFLIFTKVENSQNNGIWTADLRKQTKLLIHQVQKGVKLLCECKLIKQVNNI 137
>gi|84998828|ref|XP_954135.1| DNA-directed RNA polymerase III (-specific) subunit (RPC34 )
[Theileria annulata]
gi|65305133|emb|CAI73458.1| DNA-directed RNA polymerase III (-specific) subunit (RPC34
homologue), putative [Theileria annulata]
Length = 476
Score = 34.7 bits (78), Expect = 7.9, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQL-ETKKIIKAVKSV 82
KLKD D + ++ IE AG+KG+W DIR L Q+ + +K L E+ ++I+ + V
Sbjct: 86 KLKDIDYK---IFCTIETAGDKGLWTADIRKILGLHINQVQRGVKYLYESNRLIRPITDV 142
>gi|392573780|gb|EIW66918.1| hypothetical protein TREMEDRAFT_74612 [Tremella mesenterica DSM
1558]
Length = 583
Score = 34.7 bits (78), Expect = 7.9, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 10 GNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIR--FKSNLMP-TQLNKI 66
G +Y P +K +++KVV +I+ AGN+GI IR MP L K
Sbjct: 60 GTSIYHASSPDDAKKKTILTDQQKVVLNVIKSAGNRGISQVTIRNQIGREAMPVVTLRKT 119
Query: 67 LKQLETKKIIKAVKSVA 83
L QLE +K K ++
Sbjct: 120 LDQLEKDGHVKTFKGIS 136
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.135 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,705,035,914
Number of Sequences: 23463169
Number of extensions: 61457062
Number of successful extensions: 211397
Number of sequences better than 100.0: 419
Number of HSP's better than 100.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 210988
Number of HSP's gapped (non-prelim): 431
length of query: 117
length of database: 8,064,228,071
effective HSP length: 84
effective length of query: 33
effective length of database: 6,093,321,875
effective search space: 201079621875
effective search space used: 201079621875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)