BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7778
(117 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q921X6|RPC6_MOUSE DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus
GN=Polr3f PE=1 SV=1
Length = 316
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>sp|Q9H1D9|RPC6_HUMAN DNA-directed RNA polymerase III subunit RPC6 OS=Homo sapiens
GN=POLR3F PE=1 SV=1
Length = 316
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>sp|Q2T9S3|RPC6_BOVIN DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus
GN=POLR3F PE=2 SV=1
Length = 316
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>sp|Q9VD25|RPC6_DROME Probable DNA-directed RNA polymerase III subunit RPC6 OS=Drosophila
melanogaster GN=CG5380 PE=2 SV=1
Length = 293
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/75 (70%), Positives = 59/75 (78%), Gaps = 1/75 (1%)
Query: 9 GGNLLYKVKDPVTNEKL-KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKIL 67
G L+Y+ KDP L KD+DNEEKVVY I+EE GNKGIW+RDIR KSNL QLNKIL
Sbjct: 56 GEKLVYRAKDPEKKSALPKDADNEEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQLNKIL 115
Query: 68 KQLETKKIIKAVKSV 82
K LETKK+IKAVKSV
Sbjct: 116 KNLETKKLIKAVKSV 130
>sp|P91529|RPC6_CAEEL Probable DNA-directed RNA polymerase III subunit RPC6
OS=Caenorhabditis elegans GN=W09C3.4 PE=3 SV=1
Length = 296
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 51/76 (67%), Gaps = 4/76 (5%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
GG L KV T+E++ ++ EE+V+Y +IEE+ +GIW++++R S L QL K LK
Sbjct: 66 GGVLRLKVN---TSEQIAGTE-EEQVIYSLIEESKTRGIWIKELREGSGLNQLQLRKTLK 121
Query: 69 QLETKKIIKAVKSVAN 84
LETKK+IK +K+V
Sbjct: 122 SLETKKLIKTIKAVGT 137
>sp|Q86JM3|RPC6_DICDI DNA-directed RNA polymerase III subunit rpc6 OS=Dictyostelium
discoideum GN=polr3f PE=3 SV=1
Length = 293
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 44/71 (61%)
Query: 14 YKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK 73
YK +P K + E+ ++Y++IE + N G W R+++ S Q+ KILK LE++
Sbjct: 61 YKEVNPEDQAKFRGLGVEDFLIYQLIEASSNTGAWTRELKNSSGYQQVQITKILKTLESR 120
Query: 74 KIIKAVKSVAN 84
K+IK+VKS+ +
Sbjct: 121 KLIKSVKSIQS 131
>sp|O94553|RPC6_SCHPO Probable DNA-directed RNA polymerase III subunit rpc6
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpc6 PE=2 SV=1
Length = 301
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 40/54 (74%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVAN 84
+E++VY I+ +GN+GIW + + ++NL + +++ LK LE+K ++K++KSV N
Sbjct: 86 DEQIVYSFIKNSGNEGIWRKTLTLRTNLHVSVVDRCLKSLESKNLVKSIKSVKN 139
>sp|P32910|RPC6_YEAST DNA-directed RNA polymerase III subunit RPC6 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPC34 PE=1
SV=1
Length = 317
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
EE +VY IE +G +GIW + I+ ++NL + K LK LE+++ +K+VKSV
Sbjct: 89 EEALVYSYIEASGREGIWSKTIKARTNLHQHVVLKCLKSLESQRYVKSVKSV 140
>sp|Q9D067|MDM1_MOUSE Nuclear protein MDM1 OS=Mus musculus GN=Mdm1 PE=2 SV=2
Length = 708
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 21 TNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPT-QLNKILKQLETKKIIKA- 78
TN L++S+ + + V+K +E+ + R KS ++P Q N + E K+ K
Sbjct: 186 TNNALRNSEYQRQFVWKTSKESAPVFASNQVFRNKSQIIPQFQGNTFTHETEYKRNFKGL 245
Query: 79 --VKSVANIEYLTEGTVNAMVLPSRKKRE 105
VK + EYL + M+ P +K E
Sbjct: 246 TPVKEPKSREYLKGNSSLEMLTPVKKADE 274
>sp|Q1QEK1|G6PI_PSYCK Glucose-6-phosphate isomerase OS=Psychrobacter cryohalolentis
(strain K5) GN=pgi PE=3 SV=1
Length = 555
Score = 29.6 bits (65), Expect = 6.4, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 51 DIRFKSNLMPTQLNKILKQL--ETKKIIKAVKSVANIEYLTEG-TVNAMVLPSRKKREER 107
++ F SN+ TQL+ +LK L ET I + KS I+ L+ T + +L + K R
Sbjct: 182 EVHFVSNMDGTQLDNLLKHLNPETTLFIISSKSFGTIDTLSNAKTALSWLLATAKLRAGT 241
Query: 108 QD 109
+D
Sbjct: 242 ED 243
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,517,080
Number of Sequences: 539616
Number of extensions: 1533066
Number of successful extensions: 5663
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 5648
Number of HSP's gapped (non-prelim): 52
length of query: 117
length of database: 191,569,459
effective HSP length: 84
effective length of query: 33
effective length of database: 146,241,715
effective search space: 4825976595
effective search space used: 4825976595
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)