Query psy7778
Match_columns 117
No_of_seqs 101 out of 170
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 18:39:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yu3_A DNA-directed RNA polyme 100.0 7.6E-31 2.6E-35 183.6 8.8 83 3-85 10-92 (95)
2 2dk5_A DNA-directed RNA polyme 99.8 6.3E-20 2.1E-24 126.0 6.9 67 17-83 7-73 (91)
3 3eco_A MEPR; mutlidrug efflux 97.8 6.3E-05 2.1E-09 50.8 6.9 58 26-83 27-84 (139)
4 3bro_A Transcriptional regulat 97.8 8.1E-05 2.8E-09 50.1 7.1 58 26-83 30-87 (141)
5 1qgp_A Protein (double strande 97.7 7.9E-05 2.7E-09 48.8 6.0 58 31-89 15-73 (77)
6 3u2r_A Regulatory protein MARR 97.6 0.00015 5.1E-09 50.9 5.9 57 26-82 42-98 (168)
7 1p6r_A Penicillinase repressor 97.5 0.00024 8.2E-09 45.3 6.0 56 24-81 3-62 (82)
8 3jw4_A Transcriptional regulat 97.5 0.00013 4.4E-09 50.0 4.9 58 26-83 37-94 (148)
9 1sfx_A Conserved hypothetical 97.5 0.00043 1.5E-08 44.4 6.9 55 26-82 16-70 (109)
10 2frh_A SARA, staphylococcal ac 97.5 0.00026 8.8E-09 48.4 5.9 59 25-83 32-90 (127)
11 2nnn_A Probable transcriptiona 97.4 0.00046 1.6E-08 46.1 7.0 54 27-82 35-88 (140)
12 3nrv_A Putative transcriptiona 97.4 0.00036 1.2E-08 47.5 6.5 55 26-82 36-90 (148)
13 3r0a_A Putative transcriptiona 97.4 0.00046 1.6E-08 47.7 7.1 60 24-83 20-79 (123)
14 3bj6_A Transcriptional regulat 97.4 0.00046 1.6E-08 47.0 6.8 56 26-83 36-91 (152)
15 2vn2_A DNAD, chromosome replic 97.4 0.00041 1.4E-08 48.6 6.6 61 23-83 23-88 (128)
16 1jgs_A Multiple antibiotic res 97.4 0.00055 1.9E-08 45.9 6.9 55 26-82 30-84 (138)
17 3nqo_A MARR-family transcripti 97.4 0.00039 1.3E-08 50.3 6.5 59 24-82 35-93 (189)
18 3ech_A MEXR, multidrug resista 97.4 0.00028 9.5E-09 48.0 5.4 56 26-83 33-88 (142)
19 2rdp_A Putative transcriptiona 97.4 0.0006 2E-08 46.3 6.9 55 26-82 38-92 (150)
20 1lj9_A Transcriptional regulat 97.4 0.00044 1.5E-08 46.7 6.1 55 26-82 25-79 (144)
21 3e6m_A MARR family transcripti 97.4 0.00054 1.9E-08 47.7 6.7 56 26-83 49-104 (161)
22 1z91_A Organic hydroperoxide r 97.4 0.00048 1.6E-08 46.6 6.2 55 26-82 36-90 (147)
23 3oop_A LIN2960 protein; protei 97.3 0.00067 2.3E-08 46.0 6.8 56 26-83 33-88 (143)
24 3g3z_A NMB1585, transcriptiona 97.3 0.00073 2.5E-08 45.9 6.9 57 25-83 26-82 (145)
25 3bdd_A Regulatory protein MARR 97.3 0.0009 3.1E-08 44.8 7.2 55 27-83 28-82 (142)
26 3bpv_A Transcriptional regulat 97.3 0.0008 2.7E-08 44.9 6.9 55 26-82 25-79 (138)
27 1qbj_A Protein (double-strande 97.3 0.00068 2.3E-08 45.1 6.4 60 31-91 11-71 (81)
28 3k0l_A Repressor protein; heli 97.3 0.00045 1.5E-08 48.2 5.8 56 26-83 42-97 (162)
29 2fbi_A Probable transcriptiona 97.3 0.00082 2.8E-08 45.0 6.9 55 26-82 32-86 (142)
30 1ku9_A Hypothetical protein MJ 97.3 0.0011 3.8E-08 44.4 7.5 57 26-83 22-78 (152)
31 4b8x_A SCO5413, possible MARR- 97.3 0.00056 1.9E-08 47.8 6.1 58 26-83 31-88 (147)
32 2a61_A Transcriptional regulat 97.3 0.00088 3E-08 45.1 6.8 55 26-82 29-83 (145)
33 2bv6_A MGRA, HTH-type transcri 97.3 0.00049 1.7E-08 46.5 5.6 55 26-82 33-87 (142)
34 2fu4_A Ferric uptake regulatio 97.3 0.00067 2.3E-08 43.2 5.9 62 27-88 14-80 (83)
35 3cjn_A Transcriptional regulat 97.2 0.00086 3E-08 46.3 6.7 55 26-82 48-102 (162)
36 1okr_A MECI, methicillin resis 97.2 0.00055 1.9E-08 45.8 5.5 56 24-81 4-63 (123)
37 1sd4_A Penicillinase repressor 97.2 0.00074 2.5E-08 45.3 6.1 56 24-81 4-63 (126)
38 2eth_A Transcriptional regulat 97.2 0.00078 2.7E-08 46.4 6.3 56 26-83 40-95 (154)
39 2gxg_A 146AA long hypothetical 97.2 0.0009 3.1E-08 45.1 6.5 55 26-83 33-87 (146)
40 3bja_A Transcriptional regulat 97.2 0.00067 2.3E-08 45.2 5.7 56 26-83 29-84 (139)
41 2g9w_A Conserved hypothetical 97.2 0.00085 2.9E-08 46.7 6.4 57 24-81 3-63 (138)
42 2fbh_A Transcriptional regulat 97.2 0.001 3.4E-08 44.7 6.6 57 26-83 33-89 (146)
43 3f3x_A Transcriptional regulat 97.2 0.00089 3E-08 45.4 6.3 53 27-82 34-86 (144)
44 3hsr_A HTH-type transcriptiona 97.2 0.00048 1.7E-08 46.9 4.9 56 26-83 32-87 (140)
45 1tbx_A ORF F-93, hypothetical 97.2 0.00061 2.1E-08 44.4 5.2 54 26-81 4-61 (99)
46 1s3j_A YUSO protein; structura 97.2 0.0011 3.8E-08 45.2 6.6 55 26-82 33-87 (155)
47 1p4x_A Staphylococcal accessor 97.2 0.00039 1.3E-08 54.0 4.9 57 27-83 31-87 (250)
48 3tgn_A ADC operon repressor AD 97.2 0.00068 2.3E-08 45.8 5.5 55 26-83 34-88 (146)
49 2qww_A Transcriptional regulat 97.2 0.0011 3.6E-08 45.4 6.5 55 27-83 38-94 (154)
50 2fa5_A Transcriptional regulat 97.2 0.0011 3.9E-08 45.6 6.6 55 26-82 45-99 (162)
51 2v79_A DNA replication protein 97.1 0.00092 3.1E-08 47.9 6.1 52 27-78 29-83 (135)
52 2nyx_A Probable transcriptiona 97.1 0.0013 4.5E-08 46.2 6.7 55 27-83 42-96 (168)
53 4hbl_A Transcriptional regulat 97.1 0.0011 3.7E-08 45.6 6.0 56 26-83 37-92 (149)
54 3cdh_A Transcriptional regulat 97.1 0.00098 3.4E-08 45.7 5.7 55 26-82 39-93 (155)
55 2pex_A Transcriptional regulat 97.1 0.0019 6.5E-08 44.2 7.0 56 25-82 42-97 (153)
56 2k4b_A Transcriptional regulat 97.0 0.00071 2.4E-08 46.2 4.5 56 24-81 29-88 (99)
57 4aik_A Transcriptional regulat 97.0 0.0018 6.2E-08 45.5 6.8 57 26-83 27-83 (151)
58 3fm5_A Transcriptional regulat 97.0 0.0015 5.2E-08 44.6 6.1 58 25-83 34-91 (150)
59 1p4x_A Staphylococcal accessor 97.0 0.0012 4E-08 51.3 6.1 59 25-83 153-211 (250)
60 2d1h_A ST1889, 109AA long hypo 97.0 0.0028 9.5E-08 40.6 7.0 57 25-82 16-72 (109)
61 3kp7_A Transcriptional regulat 97.0 0.00088 3E-08 45.9 4.7 52 26-80 34-85 (151)
62 3s2w_A Transcriptional regulat 97.0 0.0014 4.7E-08 45.4 5.6 56 26-83 46-101 (159)
63 2hr3_A Probable transcriptiona 97.0 0.0012 4.2E-08 44.6 5.1 57 26-83 31-87 (147)
64 1hsj_A Fusion protein consisti 96.9 0.0013 4.5E-08 53.0 6.0 58 26-83 400-457 (487)
65 2fxa_A Protease production reg 96.9 0.0024 8.3E-08 47.3 6.7 56 25-82 43-98 (207)
66 3boq_A Transcriptional regulat 96.9 0.0011 3.7E-08 45.6 4.5 56 26-82 43-98 (160)
67 3deu_A Transcriptional regulat 96.9 0.0032 1.1E-07 44.5 6.8 58 25-83 48-105 (166)
68 2fbk_A Transcriptional regulat 96.8 0.001 3.5E-08 47.3 3.8 57 26-82 65-122 (181)
69 2qvo_A Uncharacterized protein 96.7 0.002 6.8E-08 42.1 4.5 50 27-76 9-60 (95)
70 1ub9_A Hypothetical protein PH 96.7 0.0064 2.2E-07 38.7 6.8 51 30-82 16-66 (100)
71 2heo_A Z-DNA binding protein 1 96.7 0.0059 2E-07 38.4 6.5 51 27-78 7-57 (67)
72 3k2z_A LEXA repressor; winged 96.7 0.004 1.4E-07 45.7 6.4 53 27-79 2-57 (196)
73 2obp_A Putative DNA-binding pr 96.6 0.0095 3.3E-07 40.9 7.5 56 26-81 12-71 (96)
74 2xvc_A ESCRT-III, SSO0910; cel 96.6 0.0052 1.8E-07 39.6 5.6 45 32-77 12-56 (59)
75 4fx0_A Probable transcriptiona 96.5 0.0044 1.5E-07 43.4 5.6 56 25-81 28-86 (148)
76 2htj_A P fimbrial regulatory p 96.5 0.0077 2.6E-07 38.3 6.2 46 33-80 3-48 (81)
77 3cuo_A Uncharacterized HTH-typ 96.5 0.009 3.1E-07 38.0 6.4 50 30-81 24-73 (99)
78 2x4h_A Hypothetical protein SS 96.4 0.013 4.4E-07 39.7 7.1 56 25-80 8-65 (139)
79 2cfx_A HTH-type transcriptiona 96.3 0.012 4.1E-07 40.9 6.7 54 27-82 2-55 (144)
80 1fx7_A Iron-dependent represso 96.3 0.0055 1.9E-07 46.0 5.0 56 26-81 2-59 (230)
81 2oqg_A Possible transcriptiona 96.2 0.014 4.8E-07 38.2 6.3 54 25-81 15-69 (114)
82 2y75_A HTH-type transcriptiona 96.2 0.011 3.9E-07 40.3 6.1 56 35-90 14-70 (129)
83 2wte_A CSA3; antiviral protein 96.2 0.012 4.1E-07 45.6 6.8 52 26-79 148-199 (244)
84 2pn6_A ST1022, 150AA long hypo 96.2 0.0085 2.9E-07 41.6 5.2 53 28-82 1-53 (150)
85 2w25_A Probable transcriptiona 96.1 0.017 5.7E-07 40.3 6.6 54 27-82 4-57 (150)
86 3t8r_A Staphylococcus aureus C 96.1 0.019 6.4E-07 40.8 6.9 63 28-90 6-72 (143)
87 2p5v_A Transcriptional regulat 96.0 0.018 6.3E-07 40.6 6.6 54 27-82 7-60 (162)
88 2cyy_A Putative HTH-type trans 96.0 0.016 5.3E-07 40.6 5.9 54 27-82 4-57 (151)
89 2dbb_A Putative HTH-type trans 95.9 0.019 6.5E-07 39.9 6.2 54 27-82 6-59 (151)
90 1on2_A Transcriptional regulat 95.9 0.02 6.8E-07 39.0 6.0 45 35-81 13-57 (142)
91 2ia0_A Putative HTH-type trans 95.9 0.023 8E-07 41.2 6.5 57 24-82 11-67 (171)
92 1y0u_A Arsenical resistance op 95.7 0.029 9.9E-07 36.4 5.9 46 31-80 32-77 (96)
93 1r1u_A CZRA, repressor protein 95.7 0.021 7.1E-07 37.8 5.3 54 24-80 19-73 (106)
94 2jt1_A PEFI protein; solution 95.7 0.051 1.7E-06 35.7 7.0 53 32-85 6-63 (77)
95 1r7j_A Conserved hypothetical 95.6 0.032 1.1E-06 37.4 6.1 47 34-81 9-55 (95)
96 2qq9_A Diphtheria toxin repres 95.6 0.0099 3.4E-07 44.7 3.9 55 27-81 3-59 (226)
97 3lwf_A LIN1550 protein, putati 95.6 0.027 9.1E-07 41.2 6.1 64 27-90 21-88 (159)
98 2lkp_A Transcriptional regulat 95.4 0.043 1.5E-06 36.5 6.1 58 30-91 32-89 (119)
99 2cg4_A Regulatory protein ASNC 95.4 0.041 1.4E-06 38.3 6.2 53 27-81 5-57 (152)
100 1xd7_A YWNA; structural genomi 95.4 0.054 1.9E-06 38.1 6.9 57 31-89 8-65 (145)
101 3b73_A PHIH1 repressor-like pr 95.4 0.052 1.8E-06 37.8 6.6 50 28-79 11-62 (111)
102 1ylf_A RRF2 family protein; st 95.2 0.063 2.2E-06 37.9 6.8 61 27-88 8-71 (149)
103 1i1g_A Transcriptional regulat 95.2 0.033 1.1E-06 37.9 5.1 52 28-81 2-53 (141)
104 1q1h_A TFE, transcription fact 95.2 0.043 1.5E-06 36.2 5.5 48 32-80 20-67 (110)
105 3df8_A Possible HXLR family tr 95.1 0.05 1.7E-06 36.7 5.7 53 34-89 31-84 (111)
106 2h09_A Transcriptional regulat 95.0 0.059 2E-06 37.2 6.0 53 34-90 44-96 (155)
107 3k69_A Putative transcription 95.0 0.026 8.9E-07 41.0 4.2 59 32-90 12-72 (162)
108 1mzb_A Ferric uptake regulatio 94.9 0.072 2.4E-06 37.1 6.3 63 27-89 15-82 (136)
109 3jth_A Transcription activator 94.9 0.066 2.3E-06 34.5 5.7 54 25-81 17-71 (98)
110 2fe3_A Peroxide operon regulat 94.9 0.1 3.4E-06 36.8 7.1 62 27-89 19-85 (145)
111 2hzt_A Putative HTH-type trans 94.9 0.074 2.5E-06 35.3 6.1 47 34-83 18-65 (107)
112 1sfu_A 34L protein; protein/Z- 94.8 0.12 4.1E-06 34.4 6.7 56 34-90 16-72 (75)
113 2e1c_A Putative HTH-type trans 94.7 0.075 2.5E-06 38.5 6.2 54 27-82 24-77 (171)
114 1u2w_A CADC repressor, cadmium 94.6 0.1 3.6E-06 35.4 6.4 46 33-80 45-90 (122)
115 1oyi_A Double-stranded RNA-bin 94.6 0.11 3.8E-06 34.9 6.3 56 35-94 22-77 (82)
116 1z7u_A Hypothetical protein EF 94.5 0.053 1.8E-06 36.3 4.6 49 32-83 24-73 (112)
117 2jsc_A Transcriptional regulat 94.5 0.08 2.8E-06 35.8 5.6 53 25-80 15-68 (118)
118 1bja_A Transcription regulator 94.3 0.11 3.9E-06 35.6 6.0 50 26-77 12-62 (95)
119 3pqk_A Biofilm growth-associat 94.3 0.081 2.8E-06 34.4 5.1 54 24-80 16-70 (102)
120 2w57_A Ferric uptake regulatio 94.2 0.11 3.8E-06 36.9 6.0 63 27-89 14-81 (150)
121 3i4p_A Transcriptional regulat 94.2 0.087 3E-06 37.4 5.4 53 28-82 1-53 (162)
122 3f6o_A Probable transcriptiona 94.2 0.12 4.2E-06 34.7 6.0 63 23-89 10-73 (118)
123 2pg4_A Uncharacterized protein 94.2 0.068 2.3E-06 34.4 4.4 42 35-77 20-62 (95)
124 1z6r_A MLC protein; transcript 94.1 0.07 2.4E-06 42.5 5.2 48 31-80 17-64 (406)
125 2o03_A Probable zinc uptake re 94.1 0.1 3.4E-06 36.1 5.4 61 28-89 9-74 (131)
126 2kko_A Possible transcriptiona 94.0 0.1 3.4E-06 34.8 5.2 53 25-80 19-72 (108)
127 1z05_A Transcriptional regulat 94.0 0.11 3.7E-06 42.0 6.3 48 31-80 40-87 (429)
128 1uly_A Hypothetical protein PH 93.9 0.088 3E-06 39.1 5.2 50 28-80 18-67 (192)
129 3hrs_A Metalloregulator SCAR; 93.9 0.063 2.1E-06 40.1 4.4 46 34-81 10-55 (214)
130 2xig_A Ferric uptake regulatio 93.9 0.13 4.5E-06 36.5 5.8 62 27-89 24-90 (150)
131 2zcw_A TTHA1359, transcription 93.9 0.19 6.5E-06 35.2 6.6 54 25-78 114-178 (202)
132 3cta_A Riboflavin kinase; stru 93.8 0.096 3.3E-06 39.0 5.3 51 29-79 6-60 (230)
133 3b02_A Transcriptional regulat 93.8 0.17 5.8E-06 35.4 6.2 55 24-78 106-171 (195)
134 2f2e_A PA1607; transcription f 93.7 0.11 3.9E-06 36.5 5.3 46 34-82 28-73 (146)
135 3ryp_A Catabolite gene activat 93.4 0.26 8.8E-06 34.3 6.5 54 25-78 135-199 (210)
136 1r1t_A Transcriptional repress 93.3 0.17 5.9E-06 34.6 5.5 53 34-90 50-102 (122)
137 2fsw_A PG_0823 protein; alpha- 93.1 0.22 7.7E-06 32.8 5.7 46 34-82 29-75 (107)
138 3iwz_A CAP-like, catabolite ac 93.1 0.29 1E-05 34.5 6.6 54 25-78 155-219 (230)
139 3eyy_A Putative iron uptake re 93.1 0.3 1E-05 34.4 6.6 61 27-89 16-81 (145)
140 2lnb_A Z-DNA-binding protein 1 93.1 0.2 6.7E-06 33.9 5.2 51 29-80 18-68 (80)
141 2p4w_A Transcriptional regulat 93.0 0.22 7.7E-06 37.3 6.1 53 26-81 10-63 (202)
142 1mkm_A ICLR transcriptional re 93.0 0.21 7E-06 37.7 5.9 45 34-79 12-56 (249)
143 1v4r_A Transcriptional repress 92.7 0.18 6.3E-06 33.0 4.7 61 33-95 14-82 (102)
144 1jhf_A LEXA repressor; LEXA SO 92.7 0.23 8E-06 35.9 5.7 53 26-78 2-58 (202)
145 2hoe_A N-acetylglucosamine kin 92.6 0.11 3.8E-06 41.3 4.1 47 32-81 22-68 (380)
146 2oz6_A Virulence factor regula 92.5 0.41 1.4E-05 33.2 6.5 54 25-78 132-196 (207)
147 2xrn_A HTH-type transcriptiona 92.3 0.21 7E-06 37.6 5.1 46 34-80 10-55 (241)
148 1zyb_A Transcription regulator 92.2 0.3 1E-05 35.1 5.8 55 24-78 158-218 (232)
149 2pjp_A Selenocysteine-specific 92.1 0.54 1.8E-05 32.0 6.6 61 28-91 1-62 (121)
150 1ft9_A Carbon monoxide oxidati 91.9 0.27 9.1E-06 35.0 5.1 54 25-78 130-195 (222)
151 3neu_A LIN1836 protein; struct 91.8 0.29 1E-05 33.6 5.1 56 33-90 16-79 (125)
152 1xmk_A Double-stranded RNA-spe 91.8 0.22 7.7E-06 32.8 4.2 48 30-79 11-59 (79)
153 3f6v_A Possible transcriptiona 91.7 0.31 1.1E-05 34.7 5.2 53 25-80 52-105 (151)
154 1yyv_A Putative transcriptiona 91.7 0.32 1.1E-05 33.8 5.2 39 44-82 46-85 (131)
155 1tc3_C Protein (TC3 transposas 91.6 0.37 1.3E-05 26.0 4.4 45 26-74 4-49 (51)
156 1xn7_A Hypothetical protein YH 91.5 0.52 1.8E-05 30.7 5.7 44 34-79 6-49 (78)
157 3dv8_A Transcriptional regulat 91.4 0.36 1.2E-05 33.8 5.3 54 25-78 143-201 (220)
158 2zkz_A Transcriptional repress 91.3 0.59 2E-05 30.5 5.9 56 23-81 19-75 (99)
159 3d0s_A Transcriptional regulat 91.3 0.34 1.2E-05 34.3 5.1 54 25-78 144-209 (227)
160 3kcc_A Catabolite gene activat 91.2 0.62 2.1E-05 34.3 6.6 54 25-78 185-249 (260)
161 2k02_A Ferrous iron transport 91.1 0.57 2E-05 31.4 5.8 45 34-80 6-50 (87)
162 3rkx_A Biotin-[acetyl-COA-carb 91.1 0.49 1.7E-05 37.8 6.4 54 28-81 1-55 (323)
163 2ek5_A Predicted transcription 91.1 0.4 1.4E-05 33.3 5.2 55 34-90 8-70 (129)
164 2gau_A Transcriptional regulat 91.0 0.42 1.4E-05 33.9 5.4 54 25-78 148-212 (232)
165 3tqn_A Transcriptional regulat 91.0 0.4 1.4E-05 32.2 5.0 56 34-91 13-76 (113)
166 3l7w_A Putative uncharacterize 91.0 0.4 1.4E-05 32.0 4.9 54 32-85 11-65 (108)
167 3mwm_A ZUR, putative metal upt 91.0 0.3 1E-05 34.2 4.5 62 27-89 11-77 (139)
168 3by6_A Predicted transcription 90.9 0.48 1.6E-05 32.7 5.4 56 33-90 14-77 (126)
169 2fmy_A COOA, carbon monoxide o 90.9 0.29 9.9E-06 34.6 4.4 54 25-78 134-199 (220)
170 3e6c_C CPRK, cyclic nucleotide 90.7 0.44 1.5E-05 34.5 5.3 56 24-79 143-210 (250)
171 3la7_A Global nitrogen regulat 90.5 0.38 1.3E-05 34.9 4.8 54 25-78 160-225 (243)
172 1fse_A GERE; helix-turn-helix 90.4 0.79 2.7E-05 27.4 5.5 46 23-72 7-52 (74)
173 2p8t_A Hypothetical protein PH 90.4 0.47 1.6E-05 36.3 5.4 45 44-91 28-72 (200)
174 2pi2_A Replication protein A 3 90.4 0.051 1.8E-06 42.4 0.0 51 27-77 204-256 (270)
175 3lmm_A Uncharacterized protein 90.0 0.59 2E-05 40.3 6.3 57 26-88 426-487 (583)
176 4ev0_A Transcription regulator 89.9 0.55 1.9E-05 32.7 5.1 51 28-78 140-195 (216)
177 3ulq_B Transcriptional regulat 89.4 0.85 2.9E-05 29.8 5.4 47 23-73 25-71 (90)
178 4a5n_A Uncharacterized HTH-typ 89.4 0.73 2.5E-05 32.5 5.4 38 44-81 37-75 (131)
179 3mq0_A Transcriptional repress 89.0 0.39 1.3E-05 37.0 4.0 46 34-80 34-79 (275)
180 2w48_A Sorbitol operon regulat 89.0 0.95 3.3E-05 35.2 6.3 49 31-79 6-55 (315)
181 3dkw_A DNR protein; CRP-FNR, H 88.8 0.8 2.7E-05 32.1 5.3 51 28-78 151-210 (227)
182 3e97_A Transcriptional regulat 88.6 0.61 2.1E-05 33.0 4.6 47 32-78 150-207 (231)
183 1ku3_A Sigma factor SIGA; heli 88.0 1.5 5.2E-05 26.7 5.6 49 23-71 6-59 (73)
184 1je8_A Nitrate/nitrite respons 88.0 1.1 3.7E-05 28.4 5.1 47 22-72 16-62 (82)
185 3maj_A DNA processing chain A; 88.0 0.81 2.8E-05 38.1 5.6 52 26-80 324-375 (382)
186 2g7u_A Transcriptional regulat 87.7 0.37 1.3E-05 36.5 3.1 36 44-79 27-62 (257)
187 3c57_A Two component transcrip 87.3 1.1 3.8E-05 29.1 4.9 45 23-71 23-67 (95)
188 1o5l_A Transcriptional regulat 87.3 0.11 3.7E-06 37.0 -0.1 54 25-78 138-196 (213)
189 2b0l_A GTP-sensing transcripti 86.9 0.77 2.6E-05 30.8 4.1 42 48-89 45-86 (102)
190 2p7v_B Sigma-70, RNA polymeras 86.8 2 6.7E-05 25.9 5.5 46 25-70 3-49 (68)
191 2xzm_8 RPS25E,; ribosome, tran 86.7 0.67 2.3E-05 34.3 3.9 57 25-81 39-98 (143)
192 3fx3_A Cyclic nucleotide-bindi 86.7 2.2 7.5E-05 30.2 6.6 52 24-75 148-207 (237)
193 4ham_A LMO2241 protein; struct 86.3 0.86 2.9E-05 31.3 4.1 61 27-90 12-80 (134)
194 2o0y_A Transcriptional regulat 85.8 0.96 3.3E-05 34.3 4.5 37 44-80 36-72 (260)
195 3u5c_Z RP45, S31, YS23, 40S ri 85.0 0.89 3E-05 32.1 3.6 66 24-89 35-102 (108)
196 3edp_A LIN2111 protein; APC883 84.9 1.7 6E-05 32.6 5.6 57 33-91 12-76 (236)
197 2rnj_A Response regulator prot 84.8 1.1 3.7E-05 28.7 3.8 46 23-72 25-70 (91)
198 4ets_A Ferric uptake regulatio 84.8 3 0.0001 29.9 6.5 63 26-89 29-98 (162)
199 2qby_A CDC6 homolog 1, cell di 84.4 1.6 5.5E-05 32.7 5.1 57 24-80 280-349 (386)
200 3r4k_A Transcriptional regulat 84.4 1.1 3.7E-05 34.1 4.2 37 44-80 19-55 (260)
201 1tty_A Sigma-A, RNA polymerase 84.3 2.5 8.6E-05 26.8 5.4 46 23-68 14-60 (87)
202 2qlz_A Transcription factor PF 84.2 0.7 2.4E-05 35.5 3.1 51 26-79 7-58 (232)
203 3u1d_A Uncharacterized protein 84.1 3.9 0.00013 29.9 7.0 51 31-81 30-81 (151)
204 4g6q_A Putative uncharacterize 83.6 1.8 6.3E-05 31.4 5.1 57 22-81 14-72 (182)
205 2o0m_A Transcriptional regulat 83.4 0.22 7.7E-06 39.4 0.0 51 28-80 18-69 (345)
206 1xma_A Predicted transcription 83.4 3 0.0001 29.5 6.0 49 31-82 42-98 (145)
207 2ia2_A Putative transcriptiona 83.3 1.2 4E-05 33.9 4.0 36 44-79 34-69 (265)
208 4esb_A Transcriptional regulat 83.3 1.3 4.3E-05 30.2 3.8 47 32-81 11-63 (115)
209 3iz6_V 40S ribosomal protein S 83.2 0.58 2E-05 33.0 2.1 45 45-89 59-103 (108)
210 1p4w_A RCSB; solution structur 82.8 2.4 8.2E-05 28.2 5.0 44 25-72 32-75 (99)
211 3hhh_A Transcriptional regulat 82.6 1.7 5.7E-05 29.7 4.2 47 32-81 15-67 (116)
212 1x3u_A Transcriptional regulat 82.1 1.5 5.2E-05 26.6 3.5 46 23-72 12-57 (79)
213 2esh_A Conserved hypothetical 81.8 0.96 3.3E-05 30.5 2.7 48 32-82 15-71 (118)
214 3ic7_A Putative transcriptiona 81.6 0.67 2.3E-05 31.9 1.9 55 34-90 15-77 (126)
215 4esf_A PADR-like transcription 81.5 1.3 4.4E-05 30.3 3.3 47 32-81 13-65 (117)
216 2o8x_A Probable RNA polymerase 81.0 5.1 0.00017 23.4 5.6 45 23-70 11-55 (70)
217 3qph_A TRMB, A global transcri 80.8 0.032 1.1E-06 44.9 -5.9 53 27-81 15-67 (342)
218 1hw1_A FADR, fatty acid metabo 80.5 3 0.0001 30.4 5.2 49 34-82 11-67 (239)
219 3ri2_A Transcriptional regulat 80.5 2.1 7.3E-05 29.6 4.2 27 56-82 48-74 (123)
220 3eet_A Putative GNTR-family tr 80.5 2.3 7.9E-05 32.7 4.8 56 34-91 33-96 (272)
221 1stz_A Heat-inducible transcri 80.4 3.9 0.00013 32.8 6.3 52 28-81 15-73 (338)
222 2wv0_A YVOA, HTH-type transcri 80.3 2.1 7.1E-05 32.2 4.4 57 34-92 14-78 (243)
223 3bwg_A Uncharacterized HTH-typ 80.0 2.5 8.7E-05 31.6 4.8 49 34-82 9-65 (239)
224 1yg2_A Gene activator APHA; vi 79.6 5.2 0.00018 28.5 6.2 48 32-82 4-59 (179)
225 3htu_A Vacuolar protein-sortin 79.4 1.2 4.3E-05 29.6 2.5 48 33-80 12-69 (79)
226 2bgc_A PRFA; bacterial infecti 79.1 2.2 7.4E-05 30.6 4.0 55 25-79 135-203 (238)
227 3lmm_A Uncharacterized protein 79.0 0.4 1.4E-05 41.4 0.0 53 25-79 509-563 (583)
228 2v7f_A RPS19, RPS19E SSU ribos 78.9 2.4 8.1E-05 30.8 4.2 45 42-90 65-123 (150)
229 1p2f_A Response regulator; DRR 78.4 5.1 0.00018 27.9 5.7 48 25-72 143-193 (220)
230 1zar_A RIO2 kinase; serine kin 78.4 4.4 0.00015 30.5 5.7 58 21-78 3-62 (282)
231 3f8b_A Transcriptional regulat 78.1 5.2 0.00018 26.9 5.5 49 32-80 14-67 (116)
232 3r0j_A Possible two component 77.9 7.9 0.00027 27.8 6.8 58 25-82 174-242 (250)
233 3q9s_A DNA-binding response re 77.2 3.7 0.00013 30.0 4.9 56 26-81 181-248 (249)
234 3sxy_A Transcriptional regulat 75.8 3.6 0.00012 29.8 4.5 49 34-82 16-71 (218)
235 2v9v_A Selenocysteine-specific 75.6 6.8 0.00023 26.1 5.5 48 32-80 4-51 (135)
236 2di3_A Bacterial regulatory pr 75.5 2.6 8.7E-05 31.1 3.6 59 34-92 8-76 (239)
237 1j5y_A Transcriptional regulat 74.9 6.2 0.00021 28.3 5.5 55 32-90 23-78 (187)
238 2qlz_A Transcription factor PF 74.8 3.7 0.00012 31.5 4.4 38 44-81 176-213 (232)
239 2oqr_A Sensory transduction pr 74.7 5.5 0.00019 27.9 5.1 48 25-72 154-206 (230)
240 3p9c_A Caffeic acid O-methyltr 73.7 5.4 0.00019 31.3 5.3 49 31-79 41-94 (364)
241 2dql_A PEX protein; circadian 72.4 4.8 0.00016 27.2 4.1 49 34-82 26-78 (115)
242 2co5_A Viral protein F93; vira 72.1 4.7 0.00016 27.0 4.0 53 28-80 7-64 (99)
243 3dpl_C Cullin-5; ubiquitin, NE 71.8 4.3 0.00015 32.9 4.4 46 27-72 196-241 (382)
244 3szt_A QCSR, quorum-sensing co 70.7 6.5 0.00022 29.1 4.8 46 24-73 172-217 (237)
245 1kgs_A DRRD, DNA binding respo 70.2 9 0.00031 26.5 5.3 47 25-71 149-200 (225)
246 2gwr_A DNA-binding response re 69.8 10 0.00035 26.9 5.6 57 26-82 152-221 (238)
247 3t72_q RNA polymerase sigma fa 69.7 8.4 0.00029 25.7 4.8 49 23-71 15-68 (99)
248 2z99_A Putative uncharacterize 68.9 19 0.00064 27.8 7.2 59 26-89 96-156 (219)
249 3elk_A Putative transcriptiona 68.8 3.8 0.00013 27.9 2.9 50 32-81 16-68 (117)
250 2vxz_A Pyrsv_GP04; viral prote 68.8 5.4 0.00018 30.0 4.0 52 34-88 15-66 (165)
251 3c7j_A Transcriptional regulat 68.5 5.5 0.00019 29.7 4.1 54 34-89 30-90 (237)
252 2e1n_A PEX, period extender; c 68.3 4 0.00014 28.8 3.1 56 27-82 31-90 (138)
253 3ihu_A Transcriptional regulat 68.0 6.4 0.00022 28.5 4.2 48 34-81 20-74 (222)
254 2o3f_A Putative HTH-type trans 67.4 6.5 0.00022 26.4 3.9 48 24-71 15-64 (111)
255 3klo_A Transcriptional regulat 66.7 10 0.00035 26.6 5.0 45 25-73 157-201 (225)
256 2ra5_A Putative transcriptiona 66.6 1.5 5.1E-05 33.1 0.5 55 34-90 20-82 (247)
257 1fp1_D Isoliquiritigenin 2'-O- 66.1 6.4 0.00022 30.6 4.1 45 35-79 49-101 (372)
258 2p5k_A Arginine repressor; DNA 65.9 17 0.00057 20.9 5.3 49 34-88 9-62 (64)
259 3f8m_A GNTR-family protein tra 65.5 6.5 0.00022 29.6 4.0 42 48-92 38-79 (248)
260 2jpc_A SSRB; DNA binding prote 64.3 9.7 0.00033 21.8 3.8 39 31-73 2-40 (61)
261 2q0o_A Probable transcriptiona 64.2 13 0.00046 27.0 5.4 45 25-73 173-217 (236)
262 3dp7_A SAM-dependent methyltra 64.0 9.5 0.00032 29.6 4.8 45 34-79 39-83 (363)
263 1tw3_A COMT, carminomycin 4-O- 63.9 12 0.00043 28.4 5.3 46 32-80 41-86 (360)
264 3hug_A RNA polymerase sigma fa 63.9 15 0.00052 23.0 5.0 44 23-69 33-76 (92)
265 2dk8_A DNA-directed RNA polyme 63.4 24 0.0008 23.3 6.0 56 32-89 16-72 (81)
266 2hs5_A Putative transcriptiona 63.0 8.4 0.00029 28.6 4.1 48 34-81 32-86 (239)
267 1yio_A Response regulatory pro 62.9 16 0.00054 25.0 5.3 45 25-73 140-184 (208)
268 1l3l_A Transcriptional activat 62.7 15 0.0005 26.8 5.4 44 26-73 172-215 (234)
269 3i53_A O-methyltransferase; CO 62.7 12 0.00043 28.2 5.1 46 31-79 26-71 (332)
270 2qc0_A Uncharacterized protein 62.4 7.7 0.00026 31.1 4.1 43 46-89 311-353 (373)
271 1a04_A Nitrate/nitrite respons 62.2 14 0.00048 25.5 5.0 45 25-73 152-196 (215)
272 3clo_A Transcriptional regulat 61.9 15 0.00051 27.3 5.4 43 23-69 193-235 (258)
273 2zfw_A PEX; five alpha-helices 61.9 8.8 0.0003 27.4 3.9 49 34-82 48-100 (148)
274 2esn_A Probable transcriptiona 61.8 16 0.00056 26.2 5.4 50 25-78 7-59 (310)
275 1w5s_A Origin recognition comp 61.7 37 0.0013 25.7 7.6 57 24-80 302-372 (412)
276 1rp3_A RNA polymerase sigma fa 61.6 18 0.00062 25.3 5.5 41 24-67 184-224 (239)
277 1ixc_A CBNR, LYSR-type regulat 61.3 20 0.00067 25.4 5.7 39 31-73 4-42 (294)
278 1fp2_A Isoflavone O-methyltran 60.5 17 0.00057 27.9 5.5 47 32-79 38-87 (352)
279 2r3s_A Uncharacterized protein 60.4 11 0.00038 28.2 4.4 44 32-78 28-71 (335)
280 1fnn_A CDC6P, cell division co 60.4 14 0.00049 27.7 5.0 58 24-81 282-353 (389)
281 1uss_A Histone H1; DNA binding 60.3 28 0.00096 22.8 5.9 59 28-87 7-77 (88)
282 3qp6_A CVIR transcriptional re 59.7 16 0.00055 27.6 5.3 44 26-73 196-239 (265)
283 2ip2_A Probable phenazine-spec 59.1 15 0.00052 27.6 5.0 46 32-80 30-75 (334)
284 1x19_A CRTF-related protein; m 59.1 13 0.00043 28.6 4.6 35 45-79 63-97 (359)
285 3eyi_A Z-DNA-binding protein 1 59.1 14 0.00047 24.3 4.1 49 27-77 6-56 (72)
286 2qen_A Walker-type ATPase; unk 58.5 28 0.00095 25.5 6.3 48 29-79 281-333 (350)
287 1jhg_A Trp operon repressor; c 58.5 17 0.00057 24.8 4.7 43 27-70 35-82 (101)
288 1qb2_A SRP54, human signal rec 58.4 8.5 0.00029 26.7 3.2 51 24-77 53-107 (109)
289 1pdn_C Protein (PRD paired); p 58.4 24 0.00082 22.2 5.3 48 27-77 17-64 (128)
290 4a6d_A Hydroxyindole O-methylt 58.4 17 0.00057 28.3 5.3 48 32-80 30-77 (353)
291 1bia_A BIRA bifunctional prote 58.4 24 0.00083 27.5 6.2 44 32-77 7-50 (321)
292 1qzz_A RDMB, aclacinomycin-10- 58.2 16 0.00056 27.8 5.1 45 32-79 38-82 (374)
293 2v1u_A Cell division control p 58.2 27 0.00092 26.0 6.2 57 24-80 284-352 (387)
294 3c3w_A Two component transcrip 58.1 18 0.00061 25.5 5.0 45 25-73 147-191 (225)
295 2qby_B CDC6 homolog 3, cell di 58.0 14 0.00047 27.9 4.6 56 24-80 278-340 (384)
296 1k78_A Paired box protein PAX5 57.7 24 0.0008 23.7 5.4 49 26-77 31-79 (149)
297 4gyi_A RIO2 kinase; protein ki 57.3 7.8 0.00027 32.0 3.3 84 21-104 5-93 (397)
298 1zg3_A Isoflavanone 4'-O-methy 57.2 21 0.00073 27.4 5.6 47 32-79 32-81 (358)
299 3iwf_A Transcription regulator 57.2 17 0.00057 24.4 4.5 48 23-70 10-59 (107)
300 3pfi_A Holliday junction ATP-d 56.8 31 0.0011 25.8 6.4 55 26-80 259-314 (338)
301 3mcz_A O-methyltransferase; ad 56.6 11 0.00038 28.6 3.9 35 46-80 56-90 (352)
302 2gqq_A Leucine-responsive regu 55.6 2.8 9.6E-05 29.3 0.3 49 28-78 11-59 (163)
303 2elh_A CG11849-PA, LD40883P; s 55.5 24 0.00083 22.1 4.8 44 26-72 21-64 (87)
304 1uhm_A Histone H1, histone HHO 55.3 37 0.0013 21.5 6.2 54 29-82 5-69 (78)
305 1ys7_A Transcriptional regulat 55.3 14 0.00049 25.6 4.0 47 25-71 157-208 (233)
306 2jn6_A Protein CGL2762, transp 54.2 37 0.0013 21.2 5.7 47 27-75 5-52 (97)
307 1lva_A Selenocysteine-specific 53.4 36 0.0012 25.7 6.3 64 27-93 134-201 (258)
308 3eqx_A FIC domain containing t 53.1 14 0.00047 30.0 4.1 54 46-104 311-364 (373)
309 3p7n_A Sensor histidine kinase 53.0 23 0.00077 25.0 4.8 47 23-73 194-240 (258)
310 2fna_A Conserved hypothetical 52.9 19 0.00066 26.4 4.6 49 27-79 287-341 (357)
311 2hgc_A YJCQ protein; SR346, st 52.6 22 0.00074 24.4 4.5 41 35-80 10-50 (102)
312 2l02_A Uncharacterized protein 51.8 42 0.0014 22.4 5.7 52 34-89 12-63 (82)
313 1s7o_A Hypothetical UPF0122 pr 51.5 32 0.0011 23.0 5.2 42 26-70 21-62 (113)
314 1xsv_A Hypothetical UPF0122 pr 51.5 32 0.0011 22.9 5.2 42 24-68 21-63 (113)
315 1jko_C HIN recombinase, DNA-in 50.8 8.9 0.00031 20.6 1.9 41 27-71 5-46 (52)
316 3anw_B GINS23, putative unchar 50.7 8.1 0.00028 28.9 2.2 23 22-44 143-165 (171)
317 3szp_A Transcriptional regulat 50.1 9.9 0.00034 26.7 2.5 44 31-78 4-50 (291)
318 1lva_A Selenocysteine-specific 49.9 28 0.00096 26.3 5.2 47 33-80 5-51 (258)
319 1mfq_C SRP54, signal recogniti 49.2 12 0.00041 26.8 2.8 58 24-84 66-127 (129)
320 3khy_A Propionate kinase; csgi 48.0 9.9 0.00034 31.8 2.5 46 59-104 59-110 (384)
321 1ldj_A Cullin homolog 1, CUL-1 47.7 30 0.001 30.4 5.7 49 27-77 586-634 (760)
322 3mzy_A RNA polymerase sigma-H 47.1 37 0.0013 22.0 4.9 41 24-68 105-146 (164)
323 2hqr_A Putative transcriptiona 47.0 12 0.0004 26.1 2.4 47 25-71 141-192 (223)
324 1ust_A Histone H1; DNA binding 46.5 43 0.0015 22.2 5.1 57 26-82 5-72 (93)
325 3hhg_A Transcriptional regulat 46.4 12 0.00041 26.7 2.5 42 28-73 3-44 (306)
326 2xzm_7 Plectin/S10 domain cont 46.1 11 0.00037 28.3 2.2 56 32-88 9-67 (162)
327 1u78_A TC3 transposase, transp 44.8 49 0.0017 21.3 5.2 47 26-76 5-52 (141)
328 2ijl_A AGR_C_4647P, molybdenum 44.3 34 0.0012 24.0 4.5 49 28-80 24-75 (135)
329 1or7_A Sigma-24, RNA polymeras 44.3 29 0.00099 23.6 4.1 46 23-71 136-185 (194)
330 1xb4_A VPS25, hypothetical 23. 43.6 13 0.00046 28.3 2.5 49 32-80 132-190 (202)
331 3isp_A HTH-type transcriptiona 43.4 13 0.00046 26.6 2.3 52 27-82 5-59 (303)
332 3cuq_C Vacuolar protein-sortin 43.1 13 0.00043 27.8 2.2 48 33-80 109-166 (176)
333 3fxq_A LYSR type regulator of 42.9 15 0.00053 26.4 2.6 39 31-73 5-43 (305)
334 3bdn_A Lambda repressor; repre 42.9 28 0.00096 24.9 4.0 44 25-68 4-52 (236)
335 1hst_A Histone H5; chromosomal 42.8 66 0.0022 21.1 5.6 56 27-82 6-69 (90)
336 3lst_A CALO1 methyltransferase 42.0 15 0.00051 28.2 2.5 33 46-78 55-87 (348)
337 2x48_A CAG38821; archeal virus 41.7 24 0.00081 19.8 2.8 35 30-68 19-53 (55)
338 3go5_A Multidomain protein wit 40.8 1.3E+02 0.0044 23.5 8.1 55 25-79 219-278 (285)
339 3cuq_B Vacuolar protein-sortin 40.2 75 0.0026 23.9 6.2 65 27-94 151-215 (218)
340 1lmb_3 Protein (lambda repress 40.1 38 0.0013 20.5 3.8 26 43-68 27-52 (92)
341 1t6s_A Conserved hypothetical 40.1 17 0.00059 26.5 2.5 48 28-80 92-139 (162)
342 3reo_A (ISO)eugenol O-methyltr 39.7 47 0.0016 25.8 5.1 48 32-79 43-96 (368)
343 2r0q_C Putative transposon TN5 39.7 31 0.001 24.8 3.8 41 29-69 158-198 (209)
344 2k27_A Paired box protein PAX- 38.0 26 0.00087 23.9 3.0 49 26-77 24-72 (159)
345 3fzv_A Probable transcriptiona 37.8 12 0.0004 26.8 1.3 48 27-78 3-53 (306)
346 1hlv_A CENP-B, major centromer 37.0 45 0.0016 21.7 4.1 45 25-72 5-51 (131)
347 3gwz_A MMCR; methyltransferase 35.8 22 0.00074 27.6 2.6 34 46-79 71-104 (369)
348 3l4g_A Phenylalanyl-tRNA synth 35.7 7.8 0.00027 33.3 0.0 51 32-83 7-58 (508)
349 3cuq_A Vacuolar-sorting protei 35.2 1.2E+02 0.0039 23.5 6.7 51 25-77 149-199 (234)
350 3mky_B Protein SOPB; partition 35.2 77 0.0026 23.9 5.5 60 23-83 19-80 (189)
351 2vz4_A Tipal, HTH-type transcr 35.1 17 0.00058 23.9 1.7 42 47-92 2-44 (108)
352 3l9f_A Putative uncharacterize 35.0 20 0.00067 26.8 2.1 50 32-81 38-92 (204)
353 3u5c_K 40S ribosomal protein S 34.5 39 0.0013 23.5 3.5 56 32-88 8-67 (105)
354 1hqc_A RUVB; extended AAA-ATPa 32.7 1.3E+02 0.0045 21.9 6.4 53 26-78 243-297 (324)
355 2zhg_A Redox-sensitive transcr 32.2 35 0.0012 24.1 3.0 45 46-94 11-55 (154)
356 3u5c_T 40S ribosomal protein S 31.8 33 0.0011 25.0 2.9 44 35-80 61-118 (144)
357 1hq1_A Signal recognition part 31.7 8.2 0.00028 26.6 -0.4 51 24-79 52-103 (105)
358 3mz1_A Putative transcriptiona 30.2 11 0.00037 26.5 0.0 21 53-73 19-39 (300)
359 3mn2_A Probable ARAC family tr 30.0 1E+02 0.0036 19.3 4.9 38 34-71 6-43 (108)
360 1r71_A Transcriptional repress 29.1 95 0.0033 22.6 5.0 42 26-70 34-76 (178)
361 1r8d_A Transcription activator 28.8 27 0.00092 22.9 1.8 41 49-93 5-46 (109)
362 2xi8_A Putative transcription 28.8 40 0.0014 18.7 2.4 24 45-68 13-36 (66)
363 2hye_C Cullin-4A, CUL-4A; beta 28.5 58 0.002 28.6 4.4 65 27-93 590-660 (759)
364 3hh0_A Transcriptional regulat 28.0 28 0.00095 24.4 1.8 44 46-93 4-48 (146)
365 3ke2_A Uncharacterized protein 27.8 99 0.0034 21.9 4.7 61 37-100 27-93 (117)
366 2q1z_A RPOE, ECF SIGE; ECF sig 27.5 42 0.0015 22.6 2.7 41 24-67 132-172 (184)
367 3kz3_A Repressor protein CI; f 27.2 91 0.0031 18.4 4.0 34 35-68 13-47 (80)
368 2h9b_A HTH-type transcriptiona 27.1 13 0.00045 27.0 0.0 21 53-73 22-42 (312)
369 1u5t_A Appears to BE functiona 26.2 1E+02 0.0036 23.7 5.0 50 25-76 162-211 (233)
370 3iz6_S 40S ribosomal protein S 25.9 42 0.0014 24.6 2.5 56 23-80 43-120 (146)
371 1z6t_A APAF-1, apoptotic prote 25.9 58 0.002 26.3 3.6 55 24-78 371-426 (591)
372 3r9p_A ACKA; ssgcid, seattle s 25.7 38 0.0013 28.3 2.5 46 59-104 55-109 (391)
373 3hi2_B Motility quorum-sensing 25.5 46 0.0016 22.9 2.5 52 37-89 18-72 (101)
374 2h98_A HTH-type transcriptiona 25.1 15 0.00052 27.1 0.0 21 53-73 22-42 (313)
375 2j37_W Signal recognition part 24.9 74 0.0025 26.8 4.2 56 25-83 379-438 (504)
376 3oou_A LIN2118 protein; protei 24.9 1.3E+02 0.0045 18.8 4.9 39 34-72 9-47 (108)
377 1uxc_A FRUR (1-57), fructose r 24.9 58 0.002 19.8 2.7 20 49-68 3-22 (65)
378 4asn_A TUBR; transcription, tu 24.7 1.7E+02 0.0058 19.9 6.4 59 25-83 9-71 (101)
379 1al3_A Cys regulon transcripti 24.3 16 0.00055 26.8 0.0 21 53-73 23-43 (324)
380 1uth_A LYSR-type regulatory pr 23.9 16 0.00056 26.6 0.0 44 26-73 12-55 (315)
381 1q06_A Transcriptional regulat 23.6 39 0.0013 23.2 1.9 41 49-93 3-44 (135)
382 3tdu_C Cullin-1, CUL-1; E2:E3, 23.5 1.1E+02 0.0037 19.6 3.9 30 52-81 39-68 (77)
383 3qao_A LMO0526 protein, MERR-l 23.2 48 0.0016 25.2 2.5 46 45-94 2-48 (249)
384 2l01_A Uncharacterized protein 23.1 88 0.003 20.6 3.5 38 34-73 14-52 (77)
385 3gp4_A Transcriptional regulat 23.0 44 0.0015 23.2 2.1 44 47-94 3-47 (142)
386 2rqp_A Heterochromatin protein 22.9 75 0.0026 20.5 3.1 56 27-82 8-73 (88)
387 2lfw_A PHYR sigma-like domain; 22.9 58 0.002 22.0 2.7 46 23-71 89-138 (157)
388 1u8b_A ADA polyprotein; protei 22.8 69 0.0024 21.1 3.0 35 36-72 85-119 (133)
389 4h0o_A Acetate kinase; askha ( 22.7 49 0.0017 27.8 2.6 46 59-104 73-122 (404)
390 1dul_A Signal recognition part 22.6 19 0.00066 23.1 0.1 48 25-77 19-67 (69)
391 2v9v_A Selenocysteine-specific 22.4 1.2E+02 0.0041 19.8 4.1 37 43-79 84-122 (135)
392 1vz0_A PARB, chromosome partit 22.3 1.4E+02 0.0048 22.2 5.0 42 26-70 116-158 (230)
393 2jqe_A SRP54, signal recogniti 22.2 16 0.00056 25.6 -0.3 52 24-80 61-113 (119)
394 3oio_A Transcriptional regulat 22.1 1.5E+02 0.005 18.7 4.5 38 34-71 11-48 (113)
395 4b1v_M Phosphatase and actin r 22.1 20 0.00067 20.1 0.1 20 98-117 12-31 (32)
396 2l0k_A Stage III sporulation p 21.5 1.5E+02 0.0051 19.4 4.4 33 34-69 11-43 (93)
397 4avp_A ETS translocation varia 21.2 65 0.0022 22.2 2.6 28 54-81 57-84 (106)
398 1bc8_C SAP-1, protein (SAP-1 E 21.1 74 0.0025 21.5 2.8 29 53-81 49-77 (93)
399 2ip6_A PAPB, PEDB; immunity pr 20.6 66 0.0022 22.7 2.5 21 28-48 76-97 (112)
400 1zug_A Phage 434 CRO protein; 20.5 71 0.0024 17.9 2.4 24 45-68 15-38 (71)
401 3anw_A GINS51, putative unchar 20.5 63 0.0021 23.7 2.6 22 24-45 86-107 (188)
402 4ijn_A Acetate kinase, acetoki 20.4 54 0.0018 27.4 2.4 46 59-104 64-118 (398)
403 1r8e_A Multidrug-efflux transp 20.3 82 0.0028 23.1 3.2 51 47-101 6-59 (278)
404 1r69_A Repressor protein CI; g 20.2 73 0.0025 17.8 2.4 24 45-68 13-36 (69)
405 3mkl_A HTH-type transcriptiona 20.0 1.8E+02 0.0062 18.5 4.6 37 33-69 10-46 (120)
406 1l0o_C Sigma factor; bergerat 20.0 22 0.00075 24.7 0.0 43 23-68 194-236 (243)
No 1
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.97 E-value=7.6e-31 Score=183.64 Aligned_cols=83 Identities=58% Similarity=0.861 Sum_probs=79.9
Q ss_pred ccceecCCeEEEEEeCccccccccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 3 ANGFLIGGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 3 ~~~~~~~~~l~yk~~~~e~a~k~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
..+|+.+++++|+++++++|.++++||++|++||++|++|||+|||++||+.++|||+++|+||||.||+++|||+|+||
T Consensus 10 ~~l~k~~~~l~~~~~~~~~a~k~~~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~k~lIK~Vksv 89 (95)
T 2yu3_A 10 LDLLRSNTGLLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKSV 89 (95)
T ss_dssp CCCCCCCCCCEEEECCSSSCCCCCSCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEECCS
T ss_pred EEEEEcCCEEEEEEeCHHHHhhhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEecCc
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q psy7778 83 ANI 85 (117)
Q Consensus 83 ~gg 85 (117)
++.
T Consensus 90 ~~~ 92 (95)
T 2yu3_A 90 SGP 92 (95)
T ss_dssp CSS
T ss_pred cCC
Confidence 864
No 2
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=99.80 E-value=6.3e-20 Score=126.04 Aligned_cols=67 Identities=67% Similarity=0.983 Sum_probs=65.3
Q ss_pred eCccccccccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 17 KDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 17 ~~~e~a~k~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
+++++|.++.+||++|.+||++|++|||+|||+++|+.++||+++++++||+.||+++|||.+++++
T Consensus 7 ~~~~~~~k~~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~~~~~ 73 (91)
T 2dk5_A 7 GDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVKSVA 73 (91)
T ss_dssp CCCCCCCCCCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECCSS
T ss_pred cCHHHHhhhcCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCC
Confidence 4789999999999999999999999999999999999999999999999999999999999999998
No 3
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=97.81 E-value=6.3e-05 Score=50.79 Aligned_cols=58 Identities=21% Similarity=0.211 Sum_probs=54.1
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
-+||..|..|+..|...+..|+-..+|...++++.+.++++|+.||.+|||....+-.
T Consensus 27 ~~lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~ 84 (139)
T 3eco_A 27 FDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQ 84 (139)
T ss_dssp GTCCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC
T ss_pred cCCCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCC
Confidence 5799999999999999988899999999999999999999999999999999887654
No 4
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=97.79 E-value=8.1e-05 Score=50.05 Aligned_cols=58 Identities=17% Similarity=0.248 Sum_probs=53.4
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
-+|+..|..|+..|...++.|+-..+|...++++.+.++++|+.||.+|||....+-.
T Consensus 30 ~~lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~ 87 (141)
T 3bro_A 30 YDLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGK 87 (141)
T ss_dssp TTCCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred cCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCc
Confidence 4799999999999999888899999999999999999999999999999999887643
No 5
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=97.72 E-value=7.9e-05 Score=48.79 Aligned_cols=58 Identities=21% Similarity=0.259 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhc-CCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCcccc
Q psy7778 31 EEKVVYKIIEEAG-NKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLT 89 (117)
Q Consensus 31 eE~lVY~~Ie~AG-n~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYt 89 (117)
.|+.|+.++.+.| .+++-.++|-.+.|++.++|++.|+.||..|+|..+-+ +.|.|+-
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~-~~~~W~i 73 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAG-TPPLWKI 73 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECS-SSCEEEE
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCC-CCCceEe
Confidence 4678999999999 68899999999999999999999999999999998864 5688864
No 6
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=97.55 E-value=0.00015 Score=50.91 Aligned_cols=57 Identities=5% Similarity=0.168 Sum_probs=50.6
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
-+|+..|..|+..|...|+.|+-..+|...+++..+.++++|+.||.+|||....+-
T Consensus 42 ~glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 98 (168)
T 3u2r_A 42 FELSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKP 98 (168)
T ss_dssp TTCCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEET
T ss_pred cCCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCC
Confidence 479999999999999999999999999999999999999999999999999987764
No 7
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=97.52 E-value=0.00024 Score=45.32 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=49.8
Q ss_pred cccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcC----CChHHHHHHHHHHhhcCCeeeecc
Q psy7778 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSN----LMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 24 k~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktn----L~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
+..+||+.|..|+.+|.. +.++-..+|-...+ ++.+++++.|+.||.+|+|...++
T Consensus 3 ~~~~lt~~e~~vL~~L~~--~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~~ 62 (82)
T 1p6r_A 3 KIPQISDAELEVMKVIWK--HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKE 62 (82)
T ss_dssp CCCCCCHHHHHHHHHHHT--SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred ccCCCCHHHHHHHHHHHc--CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEec
Confidence 356899999999999987 56899999999986 789999999999999999998864
No 8
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=97.51 E-value=0.00013 Score=50.02 Aligned_cols=58 Identities=17% Similarity=0.149 Sum_probs=45.5
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
-+||..|..|+..|...++.|+-..+|...++++.+.++++|+.||.+|||....+-.
T Consensus 37 ~glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~ 94 (148)
T 3jw4_A 37 LGLNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPEN 94 (148)
T ss_dssp TTCCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC----
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCC
Confidence 4799999999999999888899999999999999999999999999999999887643
No 9
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=97.48 E-value=0.00043 Score=44.37 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=49.0
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
-+|++.+..|+.+|... .++-..+|-..++++.++++++|+.|+.+|+|....+-
T Consensus 16 ~~l~~~~~~il~~l~~~--~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~ 70 (109)
T 1sfx_A 16 LSFKPSDVRIYSLLLER--GGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVE 70 (109)
T ss_dssp TCCCHHHHHHHHHHHHH--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred cCCCHHHHHHHHHHHHc--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeec
Confidence 46888899999999764 46889999999999999999999999999999988764
No 10
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=97.45 E-value=0.00026 Score=48.41 Aligned_cols=59 Identities=22% Similarity=0.187 Sum_probs=53.0
Q ss_pred ccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
--+|+..|..|...|...+..|+-..+|...++++.+.++++|+.||.+|||....+-.
T Consensus 32 ~~~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~ 90 (127)
T 2frh_A 32 EFSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEH 90 (127)
T ss_dssp TTCCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSS
T ss_pred HcCCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCC
Confidence 34799999999999988766899999999999999999999999999999998876654
No 11
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=97.45 E-value=0.00046 Score=46.09 Aligned_cols=54 Identities=7% Similarity=0.116 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
+|+..|..|+..|...| |+-..+|...++++.+.++++|+.||.+|+|....+-
T Consensus 35 ~l~~~~~~iL~~l~~~~--~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~ 88 (140)
T 2nnn_A 35 GLTPTQWAALVRLGETG--PCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADP 88 (140)
T ss_dssp CCCHHHHHHHHHHHHHS--SBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEET
T ss_pred CCCHHHHHHHHHHHHcC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCC
Confidence 89999999999998766 8999999999999999999999999999999987553
No 12
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=97.45 E-value=0.00036 Score=47.49 Aligned_cols=55 Identities=18% Similarity=0.144 Sum_probs=48.1
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
-+|+..|..|+..|...| |+-..+|...++++++.++++|+.||.+|||....+-
T Consensus 36 ~~l~~~~~~iL~~l~~~~--~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 90 (148)
T 3nrv_A 36 FGIGMTEWRIISVLSSAS--DCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHS 90 (148)
T ss_dssp GTCCHHHHHHHHHHHHSS--SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----
T ss_pred cCCCHHHHHHHHHHHcCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCC
Confidence 379999999999998876 9999999999999999999999999999999987654
No 13
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=97.44 E-value=0.00046 Score=47.72 Aligned_cols=60 Identities=13% Similarity=0.092 Sum_probs=52.6
Q ss_pred cccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 24 k~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
..-+|++.|..||.++..++...+-..+|..+++++.+++.+.|+.|+.+|+|.......
T Consensus 20 ~~~gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~~ 79 (123)
T 3r0a_A 20 CALNLTKADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQNL 79 (123)
T ss_dssp HHHTCCHHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred HHcCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCcc
Confidence 356899999999999987765449999999999999999999999999999999876543
No 14
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=97.42 E-value=0.00046 Score=47.00 Aligned_cols=56 Identities=7% Similarity=0.138 Sum_probs=50.8
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
.+|+..+..|+..|...| |+-..+|...++++.+.++++|+.||.+|||....+-.
T Consensus 36 ~~lt~~~~~iL~~l~~~~--~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~ 91 (152)
T 3bj6_A 36 EGVTVGQRAILEGLSLTP--GATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPE 91 (152)
T ss_dssp TTCCHHHHHHHHHHHHST--TEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSS
T ss_pred cCCCHHHHHHHHHHHhCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcc
Confidence 479999999999998765 89999999999999999999999999999999987643
No 15
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=97.41 E-value=0.00041 Score=48.60 Aligned_cols=61 Identities=11% Similarity=0.073 Sum_probs=51.6
Q ss_pred cccc--CCCHHHHHHHHHHHHh---cCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 23 EKLK--DSDNEEKVVYKIIEEA---GNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 23 ~k~~--~L~~eE~lVY~~Ie~A---Gn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
..++ +|++.|..||-.|... |+.++-..+|..++|+..+.++++|+.||++|||.-..+-.
T Consensus 23 ~~y~~lgLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~ 88 (128)
T 2vn2_A 23 GHYKQLGLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHTD 88 (128)
T ss_dssp TTTTTTTCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC---
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEEC
Confidence 4455 8999999999999876 56669999999999999999999999999999998876643
No 16
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=97.40 E-value=0.00055 Score=45.87 Aligned_cols=55 Identities=16% Similarity=0.082 Sum_probs=49.4
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
-+|+..|..|+..|...| |+-..+|...++++++.++++|+.||.+|||....+-
T Consensus 30 ~~lt~~~~~iL~~l~~~~--~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~ 84 (138)
T 1jgs_A 30 LDITAAQFKVLCSIRCAA--CITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNP 84 (138)
T ss_dssp TTSCHHHHHHHHHHHHHS--SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECT
T ss_pred cCCCHHHHHHHHHHHhcC--CCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCc
Confidence 479999999999997644 7899999999999999999999999999999987654
No 17
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=97.39 E-value=0.00039 Score=50.34 Aligned_cols=59 Identities=12% Similarity=0.112 Sum_probs=54.3
Q ss_pred cccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 24 k~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
.+.+||..|..|...|....+.|+-..+|...++++.+.++++|+.||.+|||....+-
T Consensus 35 ~~~~lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~ 93 (189)
T 3nqo_A 35 YFGILTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSP 93 (189)
T ss_dssp HHCSSCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHccCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCC
Confidence 45579999999999999887889999999999999999999999999999999988764
No 18
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=97.39 E-value=0.00028 Score=47.98 Aligned_cols=56 Identities=16% Similarity=0.309 Sum_probs=45.0
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
-+||+.|..|...|...| |+-..+|...++++.+.++++|+.||.+|||....+-.
T Consensus 33 ~~lt~~~~~vL~~l~~~~--~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~ 88 (142)
T 3ech_A 33 LDLTPPDVHVLKLIDEQR--GLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPS 88 (142)
T ss_dssp CCCCHHHHHHHHHHHHTT--TCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC-----
T ss_pred CCCCHHHHHHHHHHHhCC--CcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCC
Confidence 579999999999998866 89999999999999999999999999999999887653
No 19
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=97.37 E-value=0.0006 Score=46.31 Aligned_cols=55 Identities=13% Similarity=0.195 Sum_probs=49.9
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
-+|+..|..|+..|...| |+-..+|...++++.+.++++|+.||.+|||....+-
T Consensus 38 ~~l~~~~~~iL~~l~~~~--~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 92 (150)
T 2rdp_A 38 YPITPPQFVALQWLLEEG--DLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDE 92 (150)
T ss_dssp SSSCHHHHHHHHHHHHHC--SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred CCCCHHHHHHHHHHHHcC--CCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCC
Confidence 479999999999998865 7999999999999999999999999999999987654
No 20
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=97.36 E-value=0.00044 Score=46.68 Aligned_cols=55 Identities=16% Similarity=0.109 Sum_probs=49.8
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
-+||..+..|+..|...| |+-..+|...++++++.++++|+.||.+|+|....+-
T Consensus 25 ~~lt~~~~~iL~~l~~~~--~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~ 79 (144)
T 1lj9_A 25 LSLTRGQYLYLVRVCENP--GIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDA 79 (144)
T ss_dssp GTCTTTHHHHHHHHHHST--TEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred cCCCHHHHHHHHHHHHCc--CcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCC
Confidence 479999999999998754 8999999999999999999999999999999987654
No 21
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=97.36 E-value=0.00054 Score=47.68 Aligned_cols=56 Identities=9% Similarity=0.063 Sum_probs=49.6
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
-+|+..|..|+..|...| |+-..+|-..++++.+.++++|+.||.+|||....+-.
T Consensus 49 ~glt~~q~~vL~~l~~~~--~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~ 104 (161)
T 3e6m_A 49 EKLPTPKLRLLSSLSAYG--ELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDA 104 (161)
T ss_dssp HTCCHHHHHHHHHHHHHS--EEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---
T ss_pred cCCCHHHHHHHHHHHhCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcc
Confidence 479999999999998876 89999999999999999999999999999999887643
No 22
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=97.35 E-value=0.00048 Score=46.65 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=50.2
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
-+|+..|..|+..|...| ++-..+|...++++++.++++|+.||.+|||....+-
T Consensus 36 ~~l~~~~~~iL~~l~~~~--~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~ 90 (147)
T 1z91_A 36 LNITYPQYLALLLLWEHE--TLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSE 90 (147)
T ss_dssp TCCCHHHHHHHHHHHHHS--EEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCS
T ss_pred cCCCHHHHHHHHHHHHCC--CCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCC
Confidence 479999999999998876 8999999999999999999999999999999987663
No 23
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=97.34 E-value=0.00067 Score=45.97 Aligned_cols=56 Identities=23% Similarity=0.205 Sum_probs=49.2
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
-+|++.|..|+..|... .|+-..+|...++++.+.++++|+.||.+|||....+-.
T Consensus 33 ~~lt~~~~~iL~~l~~~--~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~ 88 (143)
T 3oop_A 33 YDVTPEQWSVLEGIEAN--EPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTE 88 (143)
T ss_dssp SSSCHHHHHHHHHHHHH--SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC---
T ss_pred CCCCHHHHHHHHHHHHc--CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCc
Confidence 47999999999999876 689999999999999999999999999999999887654
No 24
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=97.33 E-value=0.00073 Score=45.89 Aligned_cols=57 Identities=16% Similarity=0.106 Sum_probs=51.2
Q ss_pred ccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
-.+||..|..|...|...| |+-..+|...++++.+.++++|+.||.+|||....+-.
T Consensus 26 ~~~lt~~q~~iL~~l~~~~--~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~ 82 (145)
T 3g3z_A 26 QQDLNYNLFAVLYTLATEG--SRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQ 82 (145)
T ss_dssp TTTCCHHHHHHHHHHHHHC--SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSS
T ss_pred HcCCCHHHHHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCC
Confidence 4579999999999998877 59999999999999999999999999999999876643
No 25
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=97.31 E-value=0.0009 Score=44.75 Aligned_cols=55 Identities=9% Similarity=0.073 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
+|+..+..|+..|...| ++-..+|...++++++.++++|+.||.+|+|....+-.
T Consensus 28 ~l~~~~~~iL~~l~~~~--~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~ 82 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDA--PLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPD 82 (142)
T ss_dssp SSCHHHHHHHHHHHHHC--SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred CCCHHHHHHHHHHHhCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCC
Confidence 89999999999998765 79999999999999999999999999999999887643
No 26
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=97.31 E-value=0.0008 Score=44.92 Aligned_cols=55 Identities=13% Similarity=0.147 Sum_probs=49.8
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
-+|++.|..|+..|... .|+-..+|...++++.+.++++|+.||.+|+|....+-
T Consensus 25 ~~l~~~~~~iL~~l~~~--~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~ 79 (138)
T 3bpv_A 25 LNLTDAQVACLLRIHRE--PGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDP 79 (138)
T ss_dssp GTCCHHHHHHHHHHHHS--TTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred cCCCHHHHHHHHHHHHc--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCC
Confidence 47999999999999874 68999999999999999999999999999999987654
No 27
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=97.31 E-value=0.00068 Score=45.08 Aligned_cols=60 Identities=20% Similarity=0.232 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhc-CCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCcccccC
Q psy7778 31 EEKVVYKIIEEAG-NKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLTEG 91 (117)
Q Consensus 31 eE~lVY~~Ie~AG-n~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYtdg 91 (117)
-++.|+.++.+.| .+++-..+|-.+.|++.+.|++.|+.|+..|+|..+-+ +.|.|+--.
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~-~~~~W~i~~ 71 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAG-TPPLWKIAV 71 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESS-SSCEEEEC-
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCC-CCCeeEEeC
Confidence 4677889999887 68899999999999999999999999999999998853 568887543
No 28
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=97.30 E-value=0.00045 Score=48.15 Aligned_cols=56 Identities=14% Similarity=0.149 Sum_probs=51.2
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
-+|+..|..|+..|...| |+-..+|...++++.+.++++|+.||.+|||....+-.
T Consensus 42 ~glt~~q~~iL~~l~~~~--~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~ 97 (162)
T 3k0l_A 42 LEISLPQFTALSVLAAKP--NLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPT 97 (162)
T ss_dssp TTCCHHHHHHHHHHHHCT--TCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCS
T ss_pred cCCCHHHHHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCC
Confidence 489999999999998765 89999999999999999999999999999999887654
No 29
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=97.30 E-value=0.00082 Score=44.95 Aligned_cols=55 Identities=15% Similarity=0.271 Sum_probs=49.6
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
.+|+..|..|+..|...| |+-..+|...++++.+.++++|+.||.+|+|....+-
T Consensus 32 ~~lt~~~~~iL~~l~~~~--~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~ 86 (142)
T 2fbi_A 32 HGLTEQQWRVIRILRQQG--EMESYQLANQACILRPSMTGVLARLERDGIVRRWKAP 86 (142)
T ss_dssp HTCCHHHHHHHHHHHHHC--SEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred cCCCHHHHHHHHHHHHcC--CCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCC
Confidence 479999999999998765 6999999999999999999999999999999987654
No 30
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=97.30 E-value=0.0011 Score=44.38 Aligned_cols=57 Identities=19% Similarity=0.217 Sum_probs=49.6
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
-++++.+..|+.++..+ +.++-..+|..+++++.++++++|+.||.+|+|...++-.
T Consensus 22 ~gl~~~~~~il~~L~~~-~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~ 78 (152)
T 1ku9_A 22 HGLNKSVGAVYAILYLS-DKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKG 78 (152)
T ss_dssp TTCCHHHHHHHHHHHHC-SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTT
T ss_pred cCCChhHHHHHHHHHHc-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCC
Confidence 47999888899888433 4689999999999999999999999999999999887543
No 31
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=97.29 E-value=0.00056 Score=47.78 Aligned_cols=58 Identities=9% Similarity=0.045 Sum_probs=53.0
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
-+||..|..|..+|..+.+.++-..+|-..+++..+.++++++.||.+|||....+-.
T Consensus 31 ~gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~ 88 (147)
T 4b8x_A 31 YGLTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPN 88 (147)
T ss_dssp GTCCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC-
T ss_pred cCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCC
Confidence 4799999999999988888889999999999999999999999999999999988754
No 32
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=97.28 E-value=0.00088 Score=45.08 Aligned_cols=55 Identities=9% Similarity=0.056 Sum_probs=49.6
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
.+|+..|..|+..|...| |+-..+|...++++.+.++++|+.||.+|+|....+-
T Consensus 29 ~~l~~~~~~iL~~l~~~~--~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~ 83 (145)
T 2a61_A 29 FGITPAQFDILQKIYFEG--PKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDP 83 (145)
T ss_dssp HTCCHHHHHHHHHHHHHC--CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred cCCCHHHHHHHHHHHHcC--CCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCC
Confidence 379999999999998754 7999999999999999999999999999999987654
No 33
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=97.28 E-value=0.00049 Score=46.48 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=49.6
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
-+|++.|..|+..|...| ++-..+|...++++.+.++++|+.||.+|||....+-
T Consensus 33 ~~l~~~~~~iL~~l~~~~--~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~ 87 (142)
T 2bv6_A 33 YNLTYPQFLVLTILWDES--PVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSE 87 (142)
T ss_dssp HTCCHHHHHHHHHHHHSS--EEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECS
T ss_pred cCCCHHHHHHHHHHHHcC--CcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCC
Confidence 379999999999998755 7999999999999999999999999999999987764
No 34
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=97.27 E-value=0.00067 Score=43.18 Aligned_cols=62 Identities=10% Similarity=0.163 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHhhc-----CCChHHHHHHHHHHhhcCCeeeeccccCCccc
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIRFKS-----NLMPTQLNKILKQLETKKIIKAVKSVANIEYL 88 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk~kt-----nL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wY 88 (117)
.+|+....|+.++.+++...+-..+|-... +++.++|.+.|+.|+..|+|..+..-.+..+|
T Consensus 14 ~~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y 80 (83)
T 2fu4_A 14 KVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVF 80 (83)
T ss_dssp CCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred CcCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEe
Confidence 377888899999987643578899999998 99999999999999999999998876666666
No 35
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=97.25 E-value=0.00086 Score=46.31 Aligned_cols=55 Identities=9% Similarity=0.162 Sum_probs=49.2
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
.+|+..|..|+..|...| |+-..+|...++++.+.++++|+.||.+|||....+-
T Consensus 48 ~~lt~~~~~iL~~l~~~~--~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~ 102 (162)
T 3cjn_A 48 LGLSTAKMRALAILSAKD--GLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDS 102 (162)
T ss_dssp HTCCHHHHHHHHHHHHSC--SEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-
T ss_pred cCCCHHHHHHHHHHHHCC--CCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCC
Confidence 479999999999998754 7999999999999999999999999999999987654
No 36
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=97.24 E-value=0.00055 Score=45.77 Aligned_cols=56 Identities=21% Similarity=0.168 Sum_probs=50.5
Q ss_pred cccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcC----CChHHHHHHHHHHhhcCCeeeecc
Q psy7778 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSN----LMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 24 k~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktn----L~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
++.+||+.|..|+.+|.. +.++-..+|-...+ ++.++++++|+.||.+|||...++
T Consensus 4 ~~~~lt~~~~~vL~~l~~--~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~ 63 (123)
T 1okr_A 4 KTYEISSAEWEVMNIIWM--KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKD 63 (123)
T ss_dssp CCCCCCHHHHHHHHHHHH--HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred ccccCCHHHHHHHHHHHh--CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEec
Confidence 356899999999999987 45899999999998 889999999999999999999876
No 37
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=97.24 E-value=0.00074 Score=45.32 Aligned_cols=56 Identities=25% Similarity=0.270 Sum_probs=49.6
Q ss_pred cccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcC----CChHHHHHHHHHHhhcCCeeeecc
Q psy7778 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSN----LMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 24 k~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktn----L~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
+..+||+.|..|+.+|-+. .|+-.++|-.+++ +..++++++|+.||.+|||...++
T Consensus 4 ~~~~Lt~~q~~vL~~L~~~--~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~~ 63 (126)
T 1sd4_A 4 KQVEISMAEWDVMNIIWDK--KSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKS 63 (126)
T ss_dssp -CCCCCHHHHHHHHHHHHS--SSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHhc--CCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEeC
Confidence 3458999999999999885 4899999999997 589999999999999999999875
No 38
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=97.24 E-value=0.00078 Score=46.44 Aligned_cols=56 Identities=13% Similarity=0.157 Sum_probs=50.3
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
.+|+..|..|+..|...+ ++-..+|...++++.+.++++|+.||.+|||....+-.
T Consensus 40 ~~lt~~~~~iL~~l~~~~--~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~ 95 (154)
T 2eth_A 40 SDMKTTELYAFLYVALFG--PKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPV 95 (154)
T ss_dssp HHSBHHHHHHHHHHHHHC--CBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTT
T ss_pred cCCCHHHHHHHHHHHHcC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCC
Confidence 368899999999998766 79999999999999999999999999999999887543
No 39
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=97.23 E-value=0.0009 Score=45.09 Aligned_cols=55 Identities=9% Similarity=0.077 Sum_probs=49.6
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
.+|+..|..|...|. +.|+-..+|...++++.+.++++|+.||.+|||....+-.
T Consensus 33 ~~l~~~~~~iL~~l~---~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~ 87 (146)
T 2gxg_A 33 LNLSYLDFLVLRATS---DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDRE 87 (146)
T ss_dssp TTCCHHHHHHHHHHT---TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred cCCCHHHHHHHHHHh---cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCC
Confidence 469999999998886 6789999999999999999999999999999999887643
No 40
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=97.22 E-value=0.00067 Score=45.22 Aligned_cols=56 Identities=9% Similarity=0.183 Sum_probs=49.8
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
-+|+..|..|+..|... .++-..+|...++++.+.++++|+.||.+|+|....+-.
T Consensus 29 ~~l~~~~~~iL~~l~~~--~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~ 84 (139)
T 3bja_A 29 YDISYVQFGVIQVLAKS--GKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPN 84 (139)
T ss_dssp GTCCHHHHHHHHHHHHS--CSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSS
T ss_pred cCCCHHHHHHHHHHHHc--CCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCC
Confidence 47999999999999764 479999999999999999999999999999999876543
No 41
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=97.22 E-value=0.00085 Score=46.70 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=50.7
Q ss_pred cccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcC----CChHHHHHHHHHHhhcCCeeeecc
Q psy7778 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSN----LMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 24 k~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktn----L~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
+..+||+.|..|+.+|-.. +.++-.++|-..++ +..+++++.|+.||.+|||...++
T Consensus 3 ~~~~lt~~e~~vL~~L~~~-~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~~ 63 (138)
T 2g9w_A 3 KLTRLGDLERAVMDHLWSR-TEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRD 63 (138)
T ss_dssp CGGGCCHHHHHHHHHHHTC-SSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC-
T ss_pred ccccCCHHHHHHHHHHHhc-CCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 3568999999999999875 35899999999997 899999999999999999999875
No 42
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=97.21 E-value=0.001 Score=44.71 Aligned_cols=57 Identities=11% Similarity=0.156 Sum_probs=49.8
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
-+|++.|..|+..|.. .+.++-..+|...++++.+.++++|+.||.+|||....+-.
T Consensus 33 ~~l~~~~~~iL~~l~~-~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~ 89 (146)
T 2fbh_A 33 LGLSQARWLVLLHLAR-HRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAE 89 (146)
T ss_dssp GCCTTTHHHHHHHHHH-CSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBT
T ss_pred CCCCHHHHHHHHHHHH-cCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCc
Confidence 4789999999988832 45689999999999999999999999999999999887653
No 43
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=97.21 E-value=0.00089 Score=45.39 Aligned_cols=53 Identities=11% Similarity=0.172 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
+||+.|..|+..|...+. -..+|...++++++.+++.|+.||.+|||....+-
T Consensus 34 ~lt~~~~~iL~~l~~~~~---~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~ 86 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR---SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDS 86 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE---EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCHHHHHHHHHHHHCCC---CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCC
Confidence 899999999999987654 89999999999999999999999999999987664
No 44
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=97.20 E-value=0.00048 Score=46.91 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=48.7
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
-+||+.|..|...|.. +.|+-..+|...++++.+.++++++.||.+|||....+-.
T Consensus 32 ~glt~~q~~vL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~ 87 (140)
T 3hsr_A 32 YDLTYTGYIVLMAIEN--DEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEK 87 (140)
T ss_dssp GTCCHHHHHHHHHSCT--TCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC---
T ss_pred cCCCHHHHHHHHHHHH--cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCC
Confidence 4799999999988865 5689999999999999999999999999999999887654
No 45
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=97.20 E-value=0.00061 Score=44.40 Aligned_cols=54 Identities=17% Similarity=0.147 Sum_probs=46.9
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHH----HhhcCCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDI----RFKSNLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdI----k~ktnL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
.+|+..|..|+..|.. +.|+-..+| ...++++.+.++++|+.||.+|||....+
T Consensus 4 ~~lt~~q~~iL~~l~~--~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~ 61 (99)
T 1tbx_A 4 TPFFYPEAIVLAYLYD--NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQE 61 (99)
T ss_dssp CSSBCHHHHHHHHHTT--CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHHHHH--cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 3688888888888865 567889999 88999999999999999999999988755
No 46
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=97.19 E-value=0.0011 Score=45.21 Aligned_cols=55 Identities=15% Similarity=0.297 Sum_probs=49.8
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
.+|+..|..|+..|...| |+-..+|...++++.+.++++|+.||.+|||....+-
T Consensus 33 ~~l~~~~~~iL~~l~~~~--~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~ 87 (155)
T 1s3j_A 33 QGVTPAQLFVLASLKKHG--SLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNT 87 (155)
T ss_dssp TTCCHHHHHHHHHHHHHS--EEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred cCCCHHHHHHHHHHHHcC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCC
Confidence 489999999999998754 7999999999999999999999999999999987654
No 47
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=97.19 E-value=0.00039 Score=53.97 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
+||..|..|...|.+.++.|+-.++|..+.++..+.++++|+.||.+|||....+-+
T Consensus 31 ~lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~~~~~ 87 (250)
T 1p4x_A 31 DMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSKI 87 (250)
T ss_dssp SSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEECSS
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEecCCCC
Confidence 799999999999999888999999999999999999999999999999999988875
No 48
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=97.18 E-value=0.00068 Score=45.83 Aligned_cols=55 Identities=13% Similarity=0.227 Sum_probs=46.3
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
-+||+.+..|...|...| +-..+|...++++.+.++++|+.||.+|||....+-.
T Consensus 34 ~~lt~~~~~iL~~l~~~~---~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~ 88 (146)
T 3tgn_A 34 VALTNTQEHILMLLSEES---LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSK 88 (146)
T ss_dssp SCCCHHHHHHHHHHTTCC---CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-----
T ss_pred cCCCHHHHHHHHHHHhCC---CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCC
Confidence 478999999999997654 9999999999999999999999999999999887643
No 49
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=97.18 E-value=0.0011 Score=45.36 Aligned_cols=55 Identities=9% Similarity=0.062 Sum_probs=48.1
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeee--ecccc
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKA--VKSVA 83 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~--VKsV~ 83 (117)
+|+..|..|+..|... .|+-..+|...++++.+.++++|+.||.+|||.. ..+-.
T Consensus 38 ~lt~~~~~iL~~l~~~--~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~ 94 (154)
T 2qww_A 38 GLTIQQLAMINVIYST--PGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPN 94 (154)
T ss_dssp TCCHHHHHHHHHHHHS--TTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CT
T ss_pred CCCHHHHHHHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCC
Confidence 7999999999999875 4799999999999999999999999999999998 65543
No 50
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=97.17 E-value=0.0011 Score=45.59 Aligned_cols=55 Identities=11% Similarity=0.078 Sum_probs=47.2
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
-+|+..|..|+..|.. +.|+-..+|...++++.+.++++|+.||.+|||....+-
T Consensus 45 ~~lt~~~~~iL~~l~~--~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~ 99 (162)
T 2fa5_A 45 YGMAIPEWRVITILAL--YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHG 99 (162)
T ss_dssp HCCCHHHHHHHHHHHH--STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----
T ss_pred cCCCHHHHHHHHHHHh--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCC
Confidence 4799999999999987 458999999999999999999999999999999987654
No 51
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=97.14 E-value=0.00092 Score=47.91 Aligned_cols=52 Identities=10% Similarity=0.020 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHHh---cCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeee
Q psy7778 27 DSDNEEKVVYKIIEEA---GNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKA 78 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~A---Gn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~ 78 (117)
+||+.|.+|+-.|... |+.++-..+|..++|+..+.+.++|..|++||+|.-
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEE
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 7999999988888775 778899999999999999999999999999999985
No 52
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=97.13 E-value=0.0013 Score=46.25 Aligned_cols=55 Identities=11% Similarity=0.176 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
+|+..|..|+..|...| |+-..+|...++++.+.++++|+.||.+|||....+-.
T Consensus 42 ~lt~~~~~iL~~L~~~~--~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~ 96 (168)
T 2nyx_A 42 NITIPQFRTLVILSNHG--PINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPT 96 (168)
T ss_dssp SCCHHHHHHHHHHHHHC--SEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred CCCHHHHHHHHHHHHcC--CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCC
Confidence 89999999999998755 79999999999999999999999999999998876643
No 53
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=97.11 E-value=0.0011 Score=45.59 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=47.4
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
-+||..|..|...|... .|+-..+|...++++.+.++++|+.||.+|||....+-.
T Consensus 37 ~~lt~~q~~iL~~l~~~--~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~ 92 (149)
T 4hbl_A 37 FGITYSQYLVMLTLWEE--NPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQS 92 (149)
T ss_dssp TTCCHHHHHHHHHHHHS--SSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC-----
T ss_pred cCCCHHHHHHHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCC
Confidence 57999999999999765 689999999999999999999999999999999887643
No 54
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=97.10 E-value=0.00098 Score=45.71 Aligned_cols=55 Identities=11% Similarity=0.218 Sum_probs=48.1
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
.+|+..|..|+..|... .|+-..+|...++++.+.++++|+.||.+|||....+-
T Consensus 39 ~~lt~~~~~iL~~l~~~--~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~ 93 (155)
T 3cdh_A 39 QGLRVPEWRVLACLVDN--DAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADA 93 (155)
T ss_dssp TTCCHHHHHHHHHHSSC--SCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC--
T ss_pred cCCCHHHHHHHHHHHHC--CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCC
Confidence 47999999999998654 48999999999999999999999999999999987654
No 55
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=97.08 E-value=0.0019 Score=44.16 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=48.8
Q ss_pred ccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
--+|+..|..|+..|... .++-..+|...++++.+.++++|+.||.+|||....+-
T Consensus 42 ~~~l~~~~~~iL~~l~~~--~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~ 97 (153)
T 2pex_A 42 ALDLTYPQYLVMLVLWET--DERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAA 97 (153)
T ss_dssp TTTCCHHHHHHHHHHHHS--CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC--
T ss_pred HCCCCHHHHHHHHHHHhC--CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCc
Confidence 347999999999999764 57999999999999999999999999999999987753
No 56
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=97.05 E-value=0.00071 Score=46.25 Aligned_cols=56 Identities=18% Similarity=0.218 Sum_probs=48.1
Q ss_pred cccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcC----CChHHHHHHHHHHhhcCCeeeecc
Q psy7778 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSN----LMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 24 k~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktn----L~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
+..+||+.|..|+.+|-+.| ++-.++|-.+.+ +..++|+++|+.||.||+|...++
T Consensus 29 ~~~~LT~~e~~VL~~L~~~~--~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~~ 88 (99)
T 2k4b_A 29 VEFNVSNAELIVMRVIWSLG--EARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEKE 88 (99)
T ss_dssp --CCCCCSCSHHHHHHHHHS--CEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEEE
T ss_pred cCCCCCHHHHHHHHHHHhCC--CCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEeC
Confidence 45579999999999998744 899999999987 568999999999999999998764
No 57
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=97.05 E-value=0.0018 Score=45.55 Aligned_cols=57 Identities=18% Similarity=0.077 Sum_probs=49.8
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
-+||..+..|...|..+|. |+-..+|-..+++..+.++++++.||.+|||....+-.
T Consensus 27 ~gLt~~q~~vL~~L~~~~~-~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~ 83 (151)
T 4aik_A 27 LELTQTHWVTLYNINRLPP-EQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSAN 83 (151)
T ss_dssp GCCCHHHHHHHHHHHHSCT-TSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred cCCCHHHHHHHHHHHHcCC-CCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCC
Confidence 4799999988888877654 67668999999999999999999999999999887754
No 58
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=97.03 E-value=0.0015 Score=44.63 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=47.3
Q ss_pred ccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
--+||..|..|...|...+ .++-..+|...++++.+.++++|+.||.+|||....+-.
T Consensus 34 ~~glt~~q~~vL~~l~~~~-~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~ 91 (150)
T 3fm5_A 34 PTGLRVRSYSVLVLACEQA-EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPS 91 (150)
T ss_dssp GGTCCHHHHHHHHHHHHST-TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-----
T ss_pred HcCCCHHHHHHHHHHHhCC-CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCcc
Confidence 3479999999998886543 469999999999999999999999999999999877653
No 59
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=97.03 E-value=0.0012 Score=51.30 Aligned_cols=59 Identities=14% Similarity=0.087 Sum_probs=54.2
Q ss_pred ccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
--+||..|..|...|...++.|+-..+|...+++..+.++++++.||.+|||....+-.
T Consensus 153 ~~gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~~~~~ 211 (250)
T 1p4x_A 153 HLTLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKERSTE 211 (250)
T ss_dssp HCSSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEEECSS
T ss_pred hCCCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeeCCCC
Confidence 34799999999999998887789999999999999999999999999999999988764
No 60
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=97.02 E-value=0.0028 Score=40.59 Aligned_cols=57 Identities=18% Similarity=0.110 Sum_probs=46.6
Q ss_pred ccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
..+|++.+..+...+-.+ +.++-..+|-..+|++.++++++|+.|+.+|+|....+-
T Consensus 16 ~~~l~~~~~~~l~~l~~~-~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~ 72 (109)
T 2d1h_A 16 CYKITDTDVAVLLKMVEI-EKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTE 72 (109)
T ss_dssp HHTCCHHHHHHHHHHHHH-CSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-
T ss_pred hhcCCHHHHHHHHHHHHc-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccc
Confidence 468888777655444432 567999999999999999999999999999999988654
No 61
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=97.00 E-value=0.00088 Score=45.89 Aligned_cols=52 Identities=15% Similarity=0.218 Sum_probs=46.4
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
-+||+.|..|+..| .+.|+-..+|...++++.+.++++|+.||.+|||...+
T Consensus 34 ~~lt~~q~~iL~~l---~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~ 85 (151)
T 3kp7_A 34 YGISAEQSHVLNML---SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEK 85 (151)
T ss_dssp HTCCHHHHHHHHHH---HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC--
T ss_pred CCCCHHHHHHHHHH---HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeC
Confidence 47999999999999 45789999999999999999999999999999999854
No 62
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=96.98 E-value=0.0014 Score=45.38 Aligned_cols=56 Identities=5% Similarity=-0.020 Sum_probs=49.7
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
-+|+..|..|+..|... .|+-..+|...++++.+.++++|+.||.+|||....+-.
T Consensus 46 ~~lt~~q~~vL~~l~~~--~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~ 101 (159)
T 3s2w_A 46 YGIGSGQFPFLMRLYRE--DGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEK 101 (159)
T ss_dssp GTCCTTTHHHHHHHHHS--CSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC-
T ss_pred cCCCHHHHHHHHHHHHC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCC
Confidence 47999899999898764 689999999999999999999999999999999887653
No 63
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.96 E-value=0.0012 Score=44.58 Aligned_cols=57 Identities=14% Similarity=0.179 Sum_probs=48.1
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
.+|+..+..|+..|..+ +.|+-..+|...++++.+.++++|+.||.+|||....+-.
T Consensus 31 ~~l~~~~~~iL~~l~~~-~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~ 87 (147)
T 2hr3_A 31 DPVQFSQLVVLGAIDRL-GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQ 87 (147)
T ss_dssp CHHHHHHHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC---
T ss_pred cCCCHHHHHHHHHHHHc-CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCC
Confidence 35778888898888873 4589999999999999999999999999999999886643
No 64
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=96.94 E-value=0.0013 Score=52.98 Aligned_cols=58 Identities=22% Similarity=0.267 Sum_probs=53.2
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
-+||..|..|...|.+....|+-.++|..++++..+.++++|+.||.+|||....+-+
T Consensus 400 ~~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~~~~~ 457 (487)
T 1hsj_A 400 FNLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQ 457 (487)
T ss_dssp CCCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCEECCS
T ss_pred cCCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCC
Confidence 4799999999999988766899999999999999999999999999999999888765
No 65
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=96.90 E-value=0.0024 Score=47.27 Aligned_cols=56 Identities=16% Similarity=0.126 Sum_probs=50.4
Q ss_pred ccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
--+|+..|..|+..|...| |+-..+|...+++..+.++++|+.||.+|||....+-
T Consensus 43 ~~gLt~~q~~iL~~L~~~~--~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~ 98 (207)
T 2fxa_A 43 PYDLNINEHHILWIAYQLN--GASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRL 98 (207)
T ss_dssp GGTCCHHHHHHHHHHHHHT--SEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC-
T ss_pred HcCCCHHHHHHHHHHHHCC--CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 3489999999999998765 8999999999999999999999999999999988764
No 66
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=96.90 E-value=0.0011 Score=45.57 Aligned_cols=56 Identities=7% Similarity=0.066 Sum_probs=47.7
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
-+|+..|..|+..|.. .+.|+-..+|...++++.+.+++.|+.||.+|||....+-
T Consensus 43 ~~l~~~~~~iL~~L~~-~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~ 98 (160)
T 3boq_A 43 TGLSLAKFDAMAQLAR-NPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSA 98 (160)
T ss_dssp HSCCHHHHHHHHHHHH-CTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC---
T ss_pred cCCCHHHHHHHHHHHH-cCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCC
Confidence 4799999999999943 3458999999999999999999999999999999987654
No 67
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=96.86 E-value=0.0032 Score=44.51 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=48.7
Q ss_pred ccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
--+|+..|..|+..|..+ +.|+-..+|...+++..+.++++|+.||.+|||....+-.
T Consensus 48 ~~glt~~q~~vL~~L~~~-~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~ 105 (166)
T 3deu_A 48 PLELTQTHWVTLHNIHQL-PPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCAS 105 (166)
T ss_dssp TTTCCHHHHHHHHHHHHS-CSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC----
T ss_pred hcCCCHHHHHHHHHHHHc-CCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCC
Confidence 347999999999999774 3579999999999999999999999999999999887653
No 68
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=96.80 E-value=0.001 Score=47.33 Aligned_cols=57 Identities=7% Similarity=0.063 Sum_probs=50.9
Q ss_pred cCCCHHHHHHHHHHHHhcC-CcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGN-KGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn-~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
.+|+..|..|+..|...|. .|+-..+|...++++.+.+++.|+.||.+|||....+-
T Consensus 65 ~glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~ 122 (181)
T 2fbk_A 65 SGLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDE 122 (181)
T ss_dssp TTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC--
T ss_pred cCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCC
Confidence 4799999999999998876 48999999999999999999999999999999987653
No 69
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=96.72 E-value=0.002 Score=42.10 Aligned_cols=50 Identities=18% Similarity=0.203 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHh--cCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCe
Q psy7778 27 DSDNEEKVVYKIIEEA--GNKGIWMRDIRFKSNLMPTQLNKILKQLETKKII 76 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~A--Gn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LI 76 (117)
+|+.-+..|...|-.. ++..+-..+|-..++++.+.++++|+.||.+|||
T Consensus 9 ~l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 9 LFKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp HSCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSE
T ss_pred CCchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCc
Confidence 4777665555555333 2334999999999999999999999999999999
No 70
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=96.71 E-value=0.0064 Score=38.71 Aligned_cols=51 Identities=16% Similarity=0.206 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 30 NEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 30 ~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
+-...|+..+... .++-..+|...+|++++++++.|+.||..|+|...++.
T Consensus 16 ~~~~~iL~~L~~~--~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~ 66 (100)
T 1ub9_A 16 PVRLGIMIFLLPR--RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVI 66 (100)
T ss_dssp HHHHHHHHHHHHH--SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred hHHHHHHHHHHhc--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 3455677777654 47899999999999999999999999999999976643
No 71
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=96.71 E-value=0.0059 Score=38.41 Aligned_cols=51 Identities=18% Similarity=0.337 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeee
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKA 78 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~ 78 (117)
.|++-+..|+.++.+.+ ..+-..+|-.++|++.+++.++|+.|+..|+|.+
T Consensus 7 ~m~~~~~~IL~~L~~~~-~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 7 TGDNLEQKILQVLSDDG-GPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp --CHHHHHHHHHHHHHC-SCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred cccHHHHHHHHHHHHcC-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 46665567888887643 4689999999999999999999999999999865
No 72
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=96.69 E-value=0.004 Score=45.72 Aligned_cols=53 Identities=25% Similarity=0.204 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHh---cCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeee
Q psy7778 27 DSDNEEKVVYKIIEEA---GNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAV 79 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~A---Gn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~V 79 (117)
+||+-|+.|+..|.+. .......++|-...|++.+.+.+.|+.||.+|+|..-
T Consensus 2 ~lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEec
Confidence 6899899999999764 2345899999999999999999999999999999864
No 73
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=96.61 E-value=0.0095 Score=40.94 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=48.5
Q ss_pred cCCCHHHHHHHHHHHHh----cCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 26 KDSDNEEKVVYKIIEEA----GNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~A----Gn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
.+|++-+..||..+.++ ....+-..+|..++.|+++.++|.|+.||.+|||....+
T Consensus 12 ~gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r~~~ 71 (96)
T 2obp_A 12 DGIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVSVE 71 (96)
T ss_dssp -CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHHHCCCEEeecC
Confidence 57999999999988766 445578899999999999999999999999999996554
No 74
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=96.60 E-value=0.0052 Score=39.61 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCee
Q psy7778 32 EKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIK 77 (117)
Q Consensus 32 E~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK 77 (117)
|..+|+.|.++|.= |=..+.-.+.+.+...+-.+|+.||+||||+
T Consensus 12 e~~lL~yIr~sGGi-ldI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 12 ERELLDYIVNNGGF-LDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHHHHTTSE-EEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCE-EeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 66899999998742 4578889999999999999999999999997
No 75
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=96.54 E-value=0.0044 Score=43.38 Aligned_cols=56 Identities=13% Similarity=0.184 Sum_probs=43.2
Q ss_pred ccCCCHHHHHHHHHHHHhc---CCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 25 LKDSDNEEKVVYKIIEEAG---NKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AG---n~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
--+||..|..|...|...+ +.++-..+|-..+++..+.++++|+.||.+|||. ..+
T Consensus 28 ~~gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr-~~~ 86 (148)
T 4fx0_A 28 PSGLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRDGLVR-VMA 86 (148)
T ss_dssp GGTCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC----
T ss_pred HcCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE-eeC
Confidence 3579999998888887654 3569999999999999999999999999999994 444
No 76
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=96.53 E-value=0.0077 Score=38.33 Aligned_cols=46 Identities=13% Similarity=0.101 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 33 KVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 33 ~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
..|+.++...| ++-..+|-..+|++.+++.+.|+.|+..|+|....
T Consensus 3 ~~Il~~L~~~~--~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~~ 48 (81)
T 2htj_A 3 NEILEFLNRHN--GGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSP 48 (81)
T ss_dssp HHHHHHHHHSC--CCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHcC--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEec
Confidence 35677776654 58999999999999999999999999999998543
No 77
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=96.49 E-value=0.009 Score=38.04 Aligned_cols=50 Identities=8% Similarity=0.203 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 30 NEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 30 ~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
+....|+..|.. +.++-..+|...+|++++++++.|+.|+..|+|...+.
T Consensus 24 ~~~~~il~~l~~--~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~ 73 (99)
T 3cuo_A 24 PKRLLILCMLSG--SPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRD 73 (99)
T ss_dssp HHHHHHHHHHTT--CCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred hHHHHHHHHHHh--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec
Confidence 345567777743 45789999999999999999999999999999998763
No 78
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=96.40 E-value=0.013 Score=39.74 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=43.0
Q ss_pred ccCCCHHHHHHHHHHHH-h-cCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 25 LKDSDNEEKVVYKIIEE-A-GNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~-A-Gn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
+.+|++.+..+...|.. + .+.++-.++|..++|++.+.++++|+.||.+|||....
T Consensus 8 ~~~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~~ 65 (139)
T 2x4h_A 8 MSNLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKKE 65 (139)
T ss_dssp ---CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HhhcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEecC
Confidence 34678755444445543 2 35689999999999999999999999999999998765
No 79
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=96.31 E-value=0.012 Score=40.91 Aligned_cols=54 Identities=22% Similarity=0.285 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
.|++-++.|+.++... ..+-.++|-.++|++.+++.+.|+.|+.+|+|+.+..+
T Consensus 2 ~ld~~d~~il~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~ 55 (144)
T 2cfx_A 2 KLDQIDLNIIEELKKD--SRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLE 55 (144)
T ss_dssp CCCHHHHHHHHHHHHC--SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred CCCHHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEecc
Confidence 3788888888888764 45889999999999999999999999999999976543
No 80
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=96.27 E-value=0.0055 Score=46.03 Aligned_cols=56 Identities=7% Similarity=0.178 Sum_probs=46.2
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccH--HHHHhhcCCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWM--RDIRFKSNLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWt--kdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
++||+-+..++..|...+..|+-. .+|..++++..+.++++|+.||.+|||....+
T Consensus 2 ~~lt~~~e~~L~~L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~Le~~GlV~r~~~ 59 (230)
T 1fx7_A 2 NELVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRMERDGLLRVAGD 59 (230)
T ss_dssp CTTSSHHHHHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC
Confidence 467776656666665555468877 99999999999999999999999999998876
No 81
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.23 E-value=0.014 Score=38.25 Aligned_cols=54 Identities=9% Similarity=0.107 Sum_probs=43.3
Q ss_pred ccCCCH-HHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 25 LKDSDN-EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 25 ~~~L~~-eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
++.|++ -...|+.++ ..| ++-..+|...++++.+++++.|+.|+..|+|...+.
T Consensus 15 ~~~l~~~~r~~IL~~L-~~~--~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 15 FAALSDETRWEILTEL-GRA--DQSASSLATRLPVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp HHHTTCHHHHHHHHHH-HHS--CBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHhCChHHHHHHHHH-HcC--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec
Confidence 444554 345677777 333 588999999999999999999999999999988765
No 82
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=96.23 E-value=0.011 Score=40.32 Aligned_cols=56 Identities=14% Similarity=0.229 Sum_probs=40.9
Q ss_pred HHHHHHHh-cCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCccccc
Q psy7778 35 VYKIIEEA-GNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLTE 90 (117)
Q Consensus 35 VY~~Ie~A-Gn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYtd 90 (117)
+...+... ++..+-.++|..++|+|.+.+.|+|..|+..|||.+..+..||-....
T Consensus 14 iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~ 70 (129)
T 2y75_A 14 IMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGS 70 (129)
T ss_dssp HHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEEESS
T ss_pred HHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceEeCC
Confidence 33344443 345688899999999999999999999999999999887666544443
No 83
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=96.21 E-value=0.012 Score=45.61 Aligned_cols=52 Identities=17% Similarity=0.221 Sum_probs=46.9
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeee
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAV 79 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~V 79 (117)
.+|++.+..|...+.+. .|+-..+|-.++|++.+++++.|+.|+.+|+|...
T Consensus 148 ~~L~~~~~~IL~~L~~~--~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~ 199 (244)
T 2wte_A 148 RDYSREEMKLLNVLYET--KGTGITELAKMLDKSEKTLINKIAELKKFGILTQK 199 (244)
T ss_dssp SCCCHHHHHHHHHHHHH--TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 38999898888888654 47899999999999999999999999999999987
No 84
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=96.16 E-value=0.0085 Score=41.58 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 28 SDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 28 L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
|++-+..|...+... .++-..+|..+.|++.+++.+.|+.|+..|+|+.+..+
T Consensus 1 ld~~~~~il~~L~~~--~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~ 53 (150)
T 2pn6_A 1 MDEIDLRILKILQYN--AKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYYAY 53 (150)
T ss_dssp CCHHHHHHHHHHTTC--TTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCC
T ss_pred CChHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEee
Confidence 466677777777654 36899999999999999999999999999999976544
No 85
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=96.12 E-value=0.017 Score=40.26 Aligned_cols=54 Identities=7% Similarity=0.260 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
.|++-++.|..++... ..+-..+|-.++|++.+.+.+.|+.||..|+|..+..+
T Consensus 4 ~ld~~~~~iL~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~ 57 (150)
T 2w25_A 4 ALDDIDRILVRELAAD--GRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSAR 57 (150)
T ss_dssp CCCHHHHHHHHHHHHC--TTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred ccCHHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEec
Confidence 3788888888888654 46889999999999999999999999999999876654
No 86
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=96.10 E-value=0.019 Score=40.75 Aligned_cols=63 Identities=17% Similarity=0.152 Sum_probs=47.4
Q ss_pred CCH-HHHHHHHHHHHhcC---CcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCccccc
Q psy7778 28 SDN-EEKVVYKIIEEAGN---KGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLTE 90 (117)
Q Consensus 28 L~~-eE~lVY~~Ie~AGn---~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYtd 90 (117)
+|. .+..+--++.-|.+ .-+-.++|-.+.|+|.+.|.|+|..|...|||.++.+.+||-...-
T Consensus 6 ls~~~~yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar 72 (143)
T 3t8r_A 6 ISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRV 72 (143)
T ss_dssp -CHHHHHHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEEESS
T ss_pred cChHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCeeecC
Confidence 444 34444444444432 3488999999999999999999999999999999999987755543
No 87
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=96.04 E-value=0.018 Score=40.63 Aligned_cols=54 Identities=20% Similarity=0.344 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
.|++-++.|+.++...| .+-.++|-.+.|++.+++.+.|+.|+..|+|+.+..+
T Consensus 7 ~ld~~~~~il~~L~~~~--~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~ 60 (162)
T 2p5v_A 7 TLDKTDIKILQVLQENG--RLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAAL 60 (162)
T ss_dssp CCCHHHHHHHHHHHHCT--TCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred CCCHHHHHHHHHHHHcC--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeeeccc
Confidence 58888888888887755 4889999999999999999999999999999976654
No 88
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=95.97 E-value=0.016 Score=40.55 Aligned_cols=54 Identities=20% Similarity=0.377 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
.|++-++.|+.++...| .+-..+|..++|++.+++.+.|+.|+..|+|+.+..+
T Consensus 4 ~ld~~~~~il~~L~~~~--~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~ 57 (151)
T 2cyy_A 4 PLDEIDKKIIKILQNDG--KAPLREISKITGLAESTIHERIRKLRESGVIKKFTAI 57 (151)
T ss_dssp CCCHHHHHHHHHHHHCT--TCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCC
T ss_pred CcCHHHHHHHHHHHHcC--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEE
Confidence 48888888888887754 6889999999999999999999999999999876543
No 89
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=95.95 E-value=0.019 Score=39.91 Aligned_cols=54 Identities=17% Similarity=0.240 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
.|++-++.|+.++... ..+-.++|-.++|++.+++.+.|+.|+..|+|+.+..+
T Consensus 6 ~ld~~d~~il~~L~~~--~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~ 59 (151)
T 2dbb_A 6 KLDRVDMQLVKILSEN--SRLTYRELADILNTTRQRIARRIDKLKKLGIIRKFTII 59 (151)
T ss_dssp CCCHHHHHHHHHHHHC--TTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEEEE
T ss_pred hCCHHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEec
Confidence 4888788888888764 46899999999999999999999999999999976554
No 90
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=95.90 E-value=0.02 Score=39.02 Aligned_cols=45 Identities=22% Similarity=0.356 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 35 VYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 35 VY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
||.++.. +.++-..+|...++++.+.++++|+.||.+|||....+
T Consensus 13 i~~l~~~--~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~~~ 57 (142)
T 1on2_A 13 IYMLIEE--KGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYEKY 57 (142)
T ss_dssp HHHHHHH--HSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHhh--cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeeC
Confidence 4444443 34789999999999999999999999999999988764
No 91
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=95.85 E-value=0.023 Score=41.15 Aligned_cols=57 Identities=7% Similarity=0.204 Sum_probs=47.7
Q ss_pred cccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 24 k~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
....|++-++.|+.++...| .+-.++|-.++|++.+++.+.|+.|+..|+|+.+..+
T Consensus 11 ~~~~ld~~d~~IL~~L~~~~--~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~~~ 67 (171)
T 2ia0_A 11 SEIHLDDLDRNILRLLKKDA--RLTISELSEQLKKPESTIHFRIKKLQERGVIERYTII 67 (171)
T ss_dssp ---CCCHHHHHHHHHHHHCT--TCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred CcCCCCHHHHHHHHHHHHcC--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeccc
Confidence 44568888888888887654 5899999999999999999999999999999876554
No 92
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=95.68 E-value=0.029 Score=36.40 Aligned_cols=46 Identities=26% Similarity=0.281 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 31 eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
....|+.+| +.++-..+|..+++++++++++.|+.|+..|+|....
T Consensus 32 ~r~~Il~~L----~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~ 77 (96)
T 1y0u_A 32 VRRKILRML----DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG 77 (96)
T ss_dssp HHHHHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHH----cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC
Confidence 345677777 2458889999999999999999999999999999876
No 93
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=95.68 E-value=0.021 Score=37.83 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=44.1
Q ss_pred cccCCCHH-HHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 24 KLKDSDNE-EKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 24 k~~~L~~e-E~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
-++.|.++ ...|+..+. +.++-..+|...+|++++.+++.|+.|+..|+|...+
T Consensus 19 ~~~~l~~~~r~~IL~~L~---~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~ 73 (106)
T 1r1u_A 19 IFKALGDYNRIRIMELLS---VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKR 73 (106)
T ss_dssp HHHHTCSHHHHHHHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHhCCHHHHHHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 35556654 446777775 3467889999999999999999999999999999876
No 94
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=95.65 E-value=0.051 Score=35.66 Aligned_cols=53 Identities=23% Similarity=0.287 Sum_probs=45.1
Q ss_pred HHHHHHHHHHh-----cCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCC
Q psy7778 32 EKVVYKIIEEA-----GNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANI 85 (117)
Q Consensus 32 E~lVY~~Ie~A-----Gn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg 85 (117)
...|+++|.+. |. -+-.++|-...|+..+++.+-|+.||.+|+|+.+.+-.+.
T Consensus 6 ~~~IL~~I~~~i~~~~g~-~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~~ggr~~ 63 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGA-PVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVNAGKGV 63 (77)
T ss_dssp HHHHHHHHHHHHHHHTTS-CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESCSSSS
T ss_pred HHHHHHHHHHHHhhccCC-CcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCCCCCc
Confidence 45788888887 33 4899999999999999999999999999999998765443
No 95
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=95.65 E-value=0.032 Score=37.35 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 34 VVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 34 lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
.||.++..-.+ |+=..+|-..+||+...+++.+..|+.+|||....+
T Consensus 9 Ii~~IL~~i~~-~~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~~~ 55 (95)
T 1r7j_A 9 IIQAILEACKS-GSPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEGK 55 (95)
T ss_dssp HHHHHHHHHTT-CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHc-CCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEECC
Confidence 68888888774 489999999999999999999999999999998743
No 96
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=95.62 E-value=0.0099 Score=44.69 Aligned_cols=55 Identities=11% Similarity=0.151 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHhcCCcccH--HHHHhhcCCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWM--RDIRFKSNLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWt--kdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
+||+-+..++..|...+..|+.. .+|..+.++..+.++++|+.||.+|||....+
T Consensus 3 ~lt~~~e~yL~~i~~l~~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~GlV~r~~~ 59 (226)
T 2qq9_A 3 DLVATTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARMERDGLVVVASD 59 (226)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT
T ss_pred CCCHHHHHHHHHHHHHhhcCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 46664444445555544457776 99999999999999999999999999998775
No 97
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=95.62 E-value=0.027 Score=41.15 Aligned_cols=64 Identities=20% Similarity=0.228 Sum_probs=49.6
Q ss_pred CCCH-HHHHHHHHHHHh---cCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCccccc
Q psy7778 27 DSDN-EEKVVYKIIEEA---GNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLTE 90 (117)
Q Consensus 27 ~L~~-eE~lVY~~Ie~A---Gn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYtd 90 (117)
.+|. .+..+--++.-| ++.-+-.++|..+.|+|.+.+.|+|..|...|||.++.+..||-+..-
T Consensus 21 ~lS~~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar 88 (159)
T 3lwf_A 21 KITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNG 88 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECS
T ss_pred eCchHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEecC
Confidence 3555 344554444444 334488999999999999999999999999999999999988765543
No 98
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=95.42 E-value=0.043 Score=36.53 Aligned_cols=58 Identities=5% Similarity=0.048 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCcccccC
Q psy7778 30 NEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLTEG 91 (117)
Q Consensus 30 ~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYtdg 91 (117)
+.+..|+..+.+ .++-..+|...+|++++.+++.|+.||..|+|...+. ..+.+|+..
T Consensus 32 ~~~~~il~~L~~---~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~~~-~r~~~~~~~ 89 (119)
T 2lkp_A 32 PSRLMILTQLRN---GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDRA-GRSIVYSLY 89 (119)
T ss_dssp HHHHHHHHHHHH---CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEEEE-TTEEEEEES
T ss_pred HHHHHHHHHHHH---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec-CCEEEEEEc
Confidence 356667777776 3678899999999999999999999999999987652 233456554
No 99
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=95.41 E-value=0.041 Score=38.33 Aligned_cols=53 Identities=9% Similarity=0.158 Sum_probs=46.2
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
.|++-++.|..++...| .+-..+|-.+.|++.+++.+.|+.|+..|+|+.+..
T Consensus 5 ~ld~~d~~il~~L~~~~--~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~ 57 (152)
T 2cg4_A 5 LIDNLDRGILEALMGNA--RTAYAELAKQFGVSPETIHVRVEKMKQAGIITGARI 57 (152)
T ss_dssp CCCHHHHHHHHHHHHCT--TSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred ccCHHHHHHHHHHHHcC--CCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEEE
Confidence 47887888888887654 588999999999999999999999999999997654
No 100
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=95.41 E-value=0.054 Score=38.10 Aligned_cols=57 Identities=12% Similarity=0.032 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcC-CcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCcccc
Q psy7778 31 EEKVVYKIIEEAGN-KGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLT 89 (117)
Q Consensus 31 eE~lVY~~Ie~AGn-~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYt 89 (117)
.+..+--++.-|.+ .+ -+++|..+.|+|.+.|.|+|..|...|||.++.+ +||-...
T Consensus 8 ~~yAl~~L~~La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG-~GGy~La 65 (145)
T 1xd7_A 8 LAVAIHILSLISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG-VPGASLK 65 (145)
T ss_dssp HHHHHHHHHHHHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS-SSSCEES
T ss_pred HHHHHHHHHHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC-CCCceec
Confidence 34445445544432 24 8899999999999999999999999999999999 7765443
No 101
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=95.38 E-value=0.052 Score=37.77 Aligned_cols=50 Identities=14% Similarity=0.281 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHHHHhhc--CCChHHHHHHHHHHhhcCCeeee
Q psy7778 28 SDNEEKVVYKIIEEAGNKGIWMRDIRFKS--NLMPTQLNKILKQLETKKIIKAV 79 (117)
Q Consensus 28 L~~eE~lVY~~Ie~AGn~GIWtkdIk~kt--nL~~~~l~K~LK~LE~k~LIK~V 79 (117)
|++-++.|+.++...| .+-..+|-... ++..+.+++.|+.|+..|||...
T Consensus 11 md~~d~~IL~~L~~~g--~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~ 62 (111)
T 3b73_A 11 MTIWDDRILEIIHEEG--NGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL 62 (111)
T ss_dssp CCHHHHHHHHHHHHHS--CBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC
T ss_pred cCHHHHHHHHHHHHcC--CCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec
Confidence 7787788888998766 68899999999 99999999999999999999986
No 102
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=95.24 E-value=0.063 Score=37.92 Aligned_cols=61 Identities=11% Similarity=-0.039 Sum_probs=43.4
Q ss_pred CCCH-HHHHHHHHHHHh--cCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCccc
Q psy7778 27 DSDN-EEKVVYKIIEEA--GNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYL 88 (117)
Q Consensus 27 ~L~~-eE~lVY~~Ie~A--Gn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wY 88 (117)
.+|. -+..+--++.-| ++.-+-.++|..+.|+|.+.+.|++..|...|||.++.+ +||-..
T Consensus 8 ~ls~~~~yAl~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG-~GGy~L 71 (149)
T 1ylf_A 8 KISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG-PGGAGL 71 (149)
T ss_dssp CCCHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC----CCEEE
T ss_pred CCChHHHHHHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC-CCceEe
Confidence 3444 344444444444 334578999999999999999999999999999999998 655433
No 103
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=95.21 E-value=0.033 Score=37.92 Aligned_cols=52 Identities=27% Similarity=0.359 Sum_probs=43.3
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 28 SDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 28 L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
|++-++.|...+...| .+-..+|..+.|++.+++.+.|+.|+..|+|+.+..
T Consensus 2 ld~~~~~il~~L~~~~--~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~ 53 (141)
T 1i1g_A 2 IDERDKIILEILEKDA--RTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYTI 53 (141)
T ss_dssp CCSHHHHHHHHHHHCT--TCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCCCC
T ss_pred CCHHHHHHHHHHHHcC--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEecccc
Confidence 5666777777876543 578999999999999999999999999999976543
No 104
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=95.17 E-value=0.043 Score=36.20 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 32 EKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 32 E~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
...|+..+-..|.. +-..+|-..+|++.+.+.++|+.|+..|+|...+
T Consensus 20 ~l~Il~~l~~~g~~-~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~~ 67 (110)
T 1q1h_A 20 VIDVLRILLDKGTE-MTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRK 67 (110)
T ss_dssp THHHHHHHHHHCSC-BCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEEE
T ss_pred HHHHHHHHHHcCCC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 33455555455544 8899999999999999999999999999998763
No 105
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=95.07 E-value=0.05 Score=36.72 Aligned_cols=53 Identities=17% Similarity=0.282 Sum_probs=40.5
Q ss_pred HHHHHHHHhcCCcccHHHHHhhc-CCChHHHHHHHHHHhhcCCeeeeccccCCcccc
Q psy7778 34 VVYKIIEEAGNKGIWMRDIRFKS-NLMPTQLNKILKQLETKKIIKAVKSVANIEYLT 89 (117)
Q Consensus 34 lVY~~Ie~AGn~GIWtkdIk~kt-nL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYt 89 (117)
.|...+. .|..-+--.+|.... ++.+++|++.|+.||..|||..... ...+|.
T Consensus 31 ~IL~~L~-~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~--r~~~y~ 84 (111)
T 3df8_A 31 LIISVLG-NGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG--QITTYA 84 (111)
T ss_dssp HHHHHHT-SSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES--SSEEEE
T ss_pred HHHHHHh-cCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec--CcEEEE
Confidence 4555554 343333479999999 9999999999999999999998766 445554
No 106
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=95.00 E-value=0.059 Score=37.22 Aligned_cols=53 Identities=23% Similarity=0.330 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCccccc
Q psy7778 34 VVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLTE 90 (117)
Q Consensus 34 lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYtd 90 (117)
.|+.+|...| ++-..+|-...++.++.++++|+.||.+|||....+ .|.+.|+
T Consensus 44 ~i~~~l~~~~--~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~~--~~~~lT~ 96 (155)
T 2h09_A 44 LISDLIREVG--EARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPW--RGVFLTA 96 (155)
T ss_dssp HHHHHHHHHS--CCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEETT--TEEEECH
T ss_pred HHHHHHHhCC--CcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEecC--CceEECh
Confidence 3444665544 577899999999999999999999999999987754 3444443
No 107
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=94.95 E-value=0.026 Score=41.03 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhc--CCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCccccc
Q psy7778 32 EKVVYKIIEEAG--NKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLTE 90 (117)
Q Consensus 32 E~lVY~~Ie~AG--n~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYtd 90 (117)
+..|--++.-|. +.-+-.++|-.+.|+|.+.|.|++..|...|||.++.+.+||-...-
T Consensus 12 ~yAlr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar 72 (162)
T 3k69_A 12 SVAVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGGYQLDL 72 (162)
T ss_dssp HHHHHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECSTTCEEECCS
T ss_pred HHHHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeEecC
Confidence 444444444443 34488999999999999999999999999999999999987765544
No 108
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=94.94 E-value=0.072 Score=37.09 Aligned_cols=63 Identities=8% Similarity=0.114 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHhhc-----CCChHHHHHHHHHHhhcCCeeeeccccCCcccc
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIRFKS-----NLMPTQLNKILKQLETKKIIKAVKSVANIEYLT 89 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk~kt-----nL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYt 89 (117)
.+|++-+.|+.++.+++..-.-..+|-.+. ++..++|-|.|+.|+..|+|..+..-.+...|.
T Consensus 15 r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 82 (136)
T 1mzb_A 15 KVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFDGGHAVFE 82 (136)
T ss_dssp CCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSSSSSCEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 478888899999987653456666776655 899999999999999999999998766666775
No 109
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=94.93 E-value=0.066 Score=34.50 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=42.4
Q ss_pred ccCCCHH-HHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 25 LKDSDNE-EKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 25 ~~~L~~e-E~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
++-|.++ ...|+.++.+ .+.-..+|...+|++++++++.|+.|+..|+|...+.
T Consensus 17 ~~~l~~~~r~~Il~~L~~---~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~ 71 (98)
T 3jth_A 17 LKAMANERRLQILCMLHN---QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKE 71 (98)
T ss_dssp HHHHCSHHHHHHHHHTTT---SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHcCCHHHHHHHHHHhc---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 3444443 3356666654 5788999999999999999999999999999987653
No 110
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=94.92 E-value=0.1 Score=36.77 Aligned_cols=62 Identities=8% Similarity=0.051 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHhhc-----CCChHHHHHHHHHHhhcCCeeeeccccCCcccc
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIRFKS-----NLMPTQLNKILKQLETKKIIKAVKSVANIEYLT 89 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk~kt-----nL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYt 89 (117)
.+|++-..|+.++.++ +.-+--.+|-... ++..++|-|.|+.|+..|+|..+..-.+...|.
T Consensus 19 r~T~qR~~Il~~L~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 85 (145)
T 2fe3_A 19 RITPQRHAILEYLVNS-MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYGDASSRFD 85 (145)
T ss_dssp CCCHHHHHHHHHHHHC-SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEEE
T ss_pred CCCHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEeeCCCceEEE
Confidence 4788888999999875 3456667776665 899999999999999999999998877667774
No 111
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=94.90 E-value=0.074 Score=35.33 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCcccHHHHHhhc-CCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 34 VVYKIIEEAGNKGIWMRDIRFKS-NLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 34 lVY~~Ie~AGn~GIWtkdIk~kt-nL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
.|...+. +.++-..+|.... ++.++++++.|+.||.+|||....+-.
T Consensus 18 ~IL~~L~---~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~ 65 (107)
T 2hzt_A 18 VILXHLT---HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQ 65 (107)
T ss_dssp HHHHHHT---TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECS
T ss_pred HHHHHHH---hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCC
Confidence 3444443 4568889999999 999999999999999999999877643
No 112
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=94.77 E-value=0.12 Score=34.41 Aligned_cols=56 Identities=14% Similarity=0.193 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCCc-ccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCccccc
Q psy7778 34 VVYKIIEEAGNKG-IWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLTE 90 (117)
Q Consensus 34 lVY~~Ie~AGn~G-IWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYtd 90 (117)
+|-+.|..-+..+ +-..+|-++.|++-+.++|+|=.|+.+|++..+.+ +-..|+-+
T Consensus 16 ~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~~~-~PP~W~~~ 72 (75)
T 1sfu_A 16 LVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMVPS-NPPKWFKN 72 (75)
T ss_dssp HHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEECC-SSCEEEEC
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecCCC-CCCCccCC
Confidence 5556667667766 99999999999999999999999999999999977 66667643
No 113
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=94.75 E-value=0.075 Score=38.51 Aligned_cols=54 Identities=20% Similarity=0.377 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
.|++-++.|...+...| .+-.++|-.+.|+..+++.+.|+.|+..|+|+.+..+
T Consensus 24 ~ld~~d~~IL~~L~~~~--~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~a~ 77 (171)
T 2e1c_A 24 PLDEIDKKIIKILQNDG--KAPLREISKITGLAESTIHERIRKLRESGVIKKFTAI 77 (171)
T ss_dssp CCCHHHHHHHHHHHHCT--TCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCC
T ss_pred CCCHHHHHHHHHHHHcC--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeeEE
Confidence 58888888888888755 5888999999999999999999999999999876543
No 114
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=94.64 E-value=0.1 Score=35.43 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=38.3
Q ss_pred HHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 33 KVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 33 ~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
..|+..+.. +.++-..+|...+|++++++++.|+.|+..|+|...+
T Consensus 45 l~IL~~L~~--~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~ 90 (122)
T 1u2w_A 45 AKITYALCQ--DEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRK 90 (122)
T ss_dssp HHHHHHHHH--SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-
T ss_pred HHHHHHHHH--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 356666654 3467889999999999999999999999999998765
No 115
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=94.62 E-value=0.11 Score=34.85 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=44.0
Q ss_pred HHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCcccccCccc
Q psy7778 35 VYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLTEGTVN 94 (117)
Q Consensus 35 VY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYtdg~~D 94 (117)
|..++. ..|+--.+|-.+.|++.+.+++.|+.||..|+|... +=+...||-.-.-|
T Consensus 22 IL~lL~---~~g~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~-~~~PP~W~~~~~~~ 77 (82)
T 1oyi_A 22 AIKTIG---IEGATAAQLTRQLNMEKREVNKALYDLQRSAMVYSS-DDIPPRWFMTTEAD 77 (82)
T ss_dssp HHHHHS---SSTEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEC-SSSSCEEESCC---
T ss_pred HHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC-CCCCCcceeccCcc
Confidence 335555 455999999999999999999999999999999886 44567788766655
No 116
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=94.52 E-value=0.053 Score=36.33 Aligned_cols=49 Identities=6% Similarity=0.028 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCCcccHHHHHhhc-CCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 32 EKVVYKIIEEAGNKGIWMRDIRFKS-NLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 32 E~lVY~~Ie~AGn~GIWtkdIk~kt-nL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
...|...+.. .++-..+|...+ ++.++++++.|+.||.+|||....+-.
T Consensus 24 ~~~IL~~L~~---~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~ 73 (112)
T 1z7u_A 24 KLSLMDELFQ---GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNE 73 (112)
T ss_dssp HHHHHHHHHH---SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECC
T ss_pred HHHHHHHHHh---CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCC
Confidence 4456666653 468899999999 999999999999999999999887643
No 117
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=94.51 E-value=0.08 Score=35.81 Aligned_cols=53 Identities=9% Similarity=0.068 Sum_probs=41.7
Q ss_pred ccCCCHH-HHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 25 LKDSDNE-EKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 25 ~~~L~~e-E~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
++.|.++ ...|+.++.. | +....+|...+|++++++++.|+.|+..|||...+
T Consensus 15 ~~aL~~~~r~~IL~~L~~-~--~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~ 68 (118)
T 2jsc_A 15 GRALADPTRCRILVALLD-G--VCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATY 68 (118)
T ss_dssp HHHHSSHHHHHHHHHHHT-T--CCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEE
T ss_pred HHHhCCHHHHHHHHHHHc-C--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEE
Confidence 4444443 4457777752 3 46779999999999999999999999999998765
No 118
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=94.34 E-value=0.11 Score=35.61 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=46.2
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHh-hcCCChHHHHHHHHHHhhcCCee
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRF-KSNLMPTQLNKILKQLETKKIIK 77 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~-ktnL~~~~l~K~LK~LE~k~LIK 77 (117)
-+|+.-|.-+.-.|...+ .+-..+|.. ...|..++|++.|+.|+.+|||.
T Consensus 12 ~~L~~~QfsiL~~L~~~~--~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe 62 (95)
T 1bja_A 12 DVLNEKTATILITIAKKD--FITAAEVREVHPDLGNAVVNSNIGVLIKKGLVE 62 (95)
T ss_dssp TSSCHHHHHHHHHHHHST--TBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE
T ss_pred cCCCHHHHHHHHHHHHCC--CCCHHHHHHHHhcccHHHHHHHHHHHHHCCCee
Confidence 579999998888887666 999999999 99999999999999999999998
No 119
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=94.31 E-value=0.081 Score=34.39 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=42.5
Q ss_pred cccCCCHH-HHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 24 KLKDSDNE-EKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 24 k~~~L~~e-E~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
-++-|.++ -..|...+.+ | ..-..+|...+|++++++++.|+.|+..|+|...+
T Consensus 16 ~~~~l~~~~r~~Il~~L~~-~--~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~ 70 (102)
T 3pqk_A 16 LLKTLSHPVRLMLVCTLVE-G--EFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRR 70 (102)
T ss_dssp HHHHHCSHHHHHHHHHHHT-C--CBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHcCCHHHHHHHHHHHh-C--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 34445543 3456667743 3 48889999999999999999999999999998765
No 120
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=94.22 E-value=0.11 Score=36.91 Aligned_cols=63 Identities=8% Similarity=0.116 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHhhc-----CCChHHHHHHHHHHhhcCCeeeeccccCCcccc
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIRFKS-----NLMPTQLNKILKQLETKKIIKAVKSVANIEYLT 89 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk~kt-----nL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYt 89 (117)
.+|++-..|+.++.+++..-+-..+|-... ++..++|-|.|+.|+..|+|..+..-.+...|.
T Consensus 14 r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 81 (150)
T 2w57_A 14 KVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHFEGGKSVFE 81 (150)
T ss_dssp CCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEECGGGCEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 478888899999987652456666665554 899999999999999999999998766666775
No 121
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=94.22 E-value=0.087 Score=37.43 Aligned_cols=53 Identities=17% Similarity=0.303 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 28 SDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 28 L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
|++-++.|..++..-| -+-.++|-.+.|+..+++.+.|+.|+..|+|+.+..+
T Consensus 1 lD~~d~~il~~L~~~~--~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~ 53 (162)
T 3i4p_A 1 MDRLDRKILRILQEDS--TLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVAL 53 (162)
T ss_dssp CCHHHHHHHHHHTTCS--CSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCC
T ss_pred CCHHHHHHHHHHHHCC--CCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeceee
Confidence 5677778888887654 4689999999999999999999999999999976554
No 122
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=94.21 E-value=0.12 Score=34.69 Aligned_cols=63 Identities=10% Similarity=0.095 Sum_probs=47.4
Q ss_pred ccccCCCHH-HHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCcccc
Q psy7778 23 EKLKDSDNE-EKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLT 89 (117)
Q Consensus 23 ~k~~~L~~e-E~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYt 89 (117)
.-++-|+++ -..|..++. +.++-..+|...+|++++.+++.|+.|+..|||...+. ....+|.
T Consensus 10 ~~~~al~~~~R~~Il~~L~---~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~-gr~~~y~ 73 (118)
T 3f6o_A 10 GIFQALADPTRRAVLGRLS---RGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQ-GRVRTCA 73 (118)
T ss_dssp HHHHHHTSHHHHHHHHHHH---TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEE
T ss_pred HHHHHhCCHHHHHHHHHHH---hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEec-CCEEEEE
Confidence 345555553 346777776 35678899999999999999999999999999988765 2334453
No 123
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=94.19 E-value=0.068 Score=34.43 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCcccHHHHHhhcCCChHH-HHHHHHHHhhcCCee
Q psy7778 35 VYKIIEEAGNKGIWMRDIRFKSNLMPTQ-LNKILKQLETKKIIK 77 (117)
Q Consensus 35 VY~~Ie~AGn~GIWtkdIk~ktnL~~~~-l~K~LK~LE~k~LIK 77 (117)
+...+...| .|+-..+|...++++.+. ++++|+.||.+|||.
T Consensus 20 ~L~~l~~~~-~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 20 TLLEFEKKG-YEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp HHHHHHHTT-CCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred HHHHHHhcC-CCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 333444432 379999999999999999 999999999999999
No 124
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=94.09 E-value=0.07 Score=42.53 Aligned_cols=48 Identities=19% Similarity=0.453 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 31 eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
.++.|+++|...| .+-..+|-++|+|..++++++++.|+..|+|.+..
T Consensus 17 n~~~il~~l~~~~--~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~~~ 64 (406)
T 1z6r_A 17 NAGAVYRLIDQLG--PVSRIDLSRLAQLAPASITKIVHEMLEAHLVQELE 64 (406)
T ss_dssp HHHHHHHHHHSSC--SCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEC-
T ss_pred HHHHHHHHHHHcC--CcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEeec
Confidence 4568999999754 59999999999999999999999999999999964
No 125
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=94.07 E-value=0.1 Score=36.11 Aligned_cols=61 Identities=8% Similarity=0.148 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHHHHhhc-----CCChHHHHHHHHHHhhcCCeeeeccccCCcccc
Q psy7778 28 SDNEEKVVYKIIEEAGNKGIWMRDIRFKS-----NLMPTQLNKILKQLETKKIIKAVKSVANIEYLT 89 (117)
Q Consensus 28 L~~eE~lVY~~Ie~AGn~GIWtkdIk~kt-----nL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYt 89 (117)
+|++-..|+.++.++ +.-+-..+|-.+. +++.++|-|.|+.|+..|+|..+..-.+...|.
T Consensus 9 ~T~qR~~Il~~l~~~-~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~~~~~~~y~ 74 (131)
T 2o03_A 9 STRQRAAISTLLETL-DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTDTGESVYR 74 (131)
T ss_dssp HHHHHHHHHHHHHHC-CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEECTTSCEEEE
T ss_pred CCHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEeCCCceEEE
Confidence 456667899999865 3456666776665 899999999999999999999999887777774
No 126
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=94.04 E-value=0.1 Score=34.80 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=41.6
Q ss_pred ccCCCHH-HHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 25 LKDSDNE-EKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 25 ~~~L~~e-E~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
++.|+++ ...|+..+. +.++-..+|...+|++++++++.|+.|+..|+|...+
T Consensus 19 ~~al~~~~r~~IL~~L~---~~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~ 72 (108)
T 2kko_A 19 GKALANGRRLQILDLLA---QGERAVEAIATATGMNLTTASANLQALKSGGLVEARR 72 (108)
T ss_dssp HHHHTTSTTHHHHHHHT---TCCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHhCCHHHHHHHHHHH---cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 4444442 334566664 3567889999999999999999999999999998876
No 127
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=94.01 E-value=0.11 Score=41.97 Aligned_cols=48 Identities=29% Similarity=0.468 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 31 eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
-++.|+++|...| .+-..+|-++|+|..++++++++.|+..|+|.+..
T Consensus 40 n~~~il~~l~~~~--~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~~~ 87 (429)
T 1z05_A 40 NAGRVYKLIDQKG--PISRIDLSKESELAPASITKITRELIDAHLIHETT 87 (429)
T ss_dssp HHHHHHHHHHHHC--SBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHcC--CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecc
Confidence 4568999999865 59999999999999999999999999999999986
No 128
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=93.94 E-value=0.088 Score=39.09 Aligned_cols=50 Identities=8% Similarity=0.252 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 28 SDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 28 L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
+++-+..|+.++. . .++-..+|..++|++++++++.|+.||..|+|....
T Consensus 18 ~d~~~~~IL~~L~-~--~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~~ 67 (192)
T 1uly_A 18 LEDTRRKILKLLR-N--KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVKR 67 (192)
T ss_dssp HSHHHHHHHHHHT-T--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHHHHHHH-c--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4556777888886 2 469999999999999999999999999999999884
No 129
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=93.91 E-value=0.063 Score=40.08 Aligned_cols=46 Identities=15% Similarity=0.289 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 34 VVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 34 lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
.||.+.+ .+.++-..+|-...++..+.++++|+.||.+|||...++
T Consensus 10 ~I~~l~~--~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~ 55 (214)
T 3hrs_A 10 CLYELGT--RHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKK 55 (214)
T ss_dssp HHHHTTS--SCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHh--cCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEecC
Confidence 5666544 356899999999999999999999999999999998875
No 130
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=93.87 E-value=0.13 Score=36.50 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHhhc-----CCChHHHHHHHHHHhhcCCeeeeccccCCcccc
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIRFKS-----NLMPTQLNKILKQLETKKIIKAVKSVANIEYLT 89 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk~kt-----nL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYt 89 (117)
.+|++-..|+.++.+++. -+--.+|-... ++..++|-|.|+.|+..|+|..+..-.+...|.
T Consensus 24 r~T~qR~~IL~~l~~~~~-~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 90 (150)
T 2xig_A 24 KNSKQREEVVSVLYRSGT-HLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLETSKSGRRYE 90 (150)
T ss_dssp -CHHHHHHHHHHHHHCSS-CBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEEE
T ss_pred CCCHHHHHHHHHHHhCCC-CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 367777799999987743 56666666555 799999999999999999999998877767774
No 131
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=93.85 E-value=0.19 Score=35.21 Aligned_cols=54 Identities=9% Similarity=0.149 Sum_probs=45.3
Q ss_pred ccCCCHHHHHHHHHHHHhcCCc-----------ccHHHHHhhcCCChHHHHHHHHHHhhcCCeee
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKG-----------IWMRDIRFKSNLMPTQLNKILKQLETKKIIKA 78 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~G-----------IWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~ 78 (117)
+...+.++++.+-+++-+...| +-..+|-.-.|+....++|+|+.|+..|+|+.
T Consensus 114 ~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~ 178 (202)
T 2zcw_A 114 LATQRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELAREGYIRS 178 (202)
T ss_dssp HHHCCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 4456778998888888776554 45689999999999999999999999999973
No 132
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=93.85 E-value=0.096 Score=38.96 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHhcC----CcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeee
Q psy7778 29 DNEEKVVYKIIEEAGN----KGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAV 79 (117)
Q Consensus 29 ~~eE~lVY~~Ie~AGn----~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~V 79 (117)
++.+..++..|...|. .|+-..++-.++++.++.+++.|+.||..+||...
T Consensus 6 ~~~~l~~l~~l~~~~~l~~~~~~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~ 60 (230)
T 3cta_A 6 DDQYYRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRT 60 (230)
T ss_dssp -CHHHHHHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHhcccccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
Confidence 4466777778877664 67889999999999999999999999999999876
No 133
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=93.76 E-value=0.17 Score=35.37 Aligned_cols=55 Identities=13% Similarity=0.191 Sum_probs=45.8
Q ss_pred cccCCCHHHHHHHHHHHHhcCCc-----------ccHHHHHhhcCCChHHHHHHHHHHhhcCCeee
Q psy7778 24 KLKDSDNEEKVVYKIIEEAGNKG-----------IWMRDIRFKSNLMPTQLNKILKQLETKKIIKA 78 (117)
Q Consensus 24 k~~~L~~eE~lVY~~Ie~AGn~G-----------IWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~ 78 (117)
.+...+.++|+.+-+.+-+...| +-..+|-.-.|+...+++|+|+.|+..|+|+.
T Consensus 106 ~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~ 171 (195)
T 3b02_A 106 HLQTGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLRREGLIAT 171 (195)
T ss_dssp HHTSSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 35567789998888887665444 45789999999999999999999999999974
No 134
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=93.74 E-value=0.11 Score=36.51 Aligned_cols=46 Identities=13% Similarity=0.086 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 34 VVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 34 lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
+|...+. +.++-..+|...+++.++++++.|+.||..|||.....-
T Consensus 28 ~IL~~L~---~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~ 73 (146)
T 2f2e_A 28 LIVRDAF---EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAE 73 (146)
T ss_dssp HHHHHHH---TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHH---hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 4444443 346788999999999999999999999999999987653
No 135
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=93.36 E-value=0.26 Score=34.33 Aligned_cols=54 Identities=22% Similarity=0.244 Sum_probs=43.9
Q ss_pred ccCCCHHHHHHHHHHHHhcCCc-----------ccHHHHHhhcCCChHHHHHHHHHHhhcCCeee
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKG-----------IWMRDIRFKSNLMPTQLNKILKQLETKKIIKA 78 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~G-----------IWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~ 78 (117)
+...+.++|+..-+++-+...| +-..+|-.-.|+...+++|+|+.|+..|+|..
T Consensus 135 ~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~ 199 (210)
T 3ryp_A 135 LAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISA 199 (210)
T ss_dssp HHHSCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HhhCCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEe
Confidence 3446678888887877765433 34689999999999999999999999999974
No 136
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=93.30 E-value=0.17 Score=34.62 Aligned_cols=53 Identities=9% Similarity=0.202 Sum_probs=40.6
Q ss_pred HHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCccccc
Q psy7778 34 VVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLTE 90 (117)
Q Consensus 34 lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYtd 90 (117)
.|+..+. +.+.-..+|...+|++++.+++.|+.||..|+|..-+. ..+.+|+-
T Consensus 50 ~IL~~L~---~~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~-gr~~~y~l 102 (122)
T 1r1t_A 50 RLLSLLA---RSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ-GRHVYYQL 102 (122)
T ss_dssp HHHHHHT---TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEE
T ss_pred HHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe-CCEEEEEE
Confidence 4555553 34678899999999999999999999999999988653 22345543
No 137
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=93.15 E-value=0.22 Score=32.82 Aligned_cols=46 Identities=20% Similarity=0.133 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCcccHHHHHhhc-CCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 34 VVYKIIEEAGNKGIWMRDIRFKS-NLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 34 lVY~~Ie~AGn~GIWtkdIk~kt-nL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
.|...+. +.++--.+|.... ++.++++++.|+.||..|||....+-
T Consensus 29 ~IL~~L~---~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~ 75 (107)
T 2fsw_A 29 LIIFQIN---RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYP 75 (107)
T ss_dssp HHHHHHT---TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHH---hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecC
Confidence 3444453 4568899999999 59999999999999999999987654
No 138
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=93.12 E-value=0.29 Score=34.53 Aligned_cols=54 Identities=13% Similarity=0.195 Sum_probs=44.6
Q ss_pred ccCCCHHHHHHHHHHHHhcCCc-----------ccHHHHHhhcCCChHHHHHHHHHHhhcCCeee
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKG-----------IWMRDIRFKSNLMPTQLNKILKQLETKKIIKA 78 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~G-----------IWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~ 78 (117)
+...+.++|+..-+.+-+...| +-..+|-.-.|+...+++|+|+.|+..|+|+.
T Consensus 155 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~ 219 (230)
T 3iwz_A 155 LAFLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGRVLKKLQADGLLHA 219 (230)
T ss_dssp HHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEE
Confidence 4456778888888887765443 45789999999999999999999999999974
No 139
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=93.11 E-value=0.3 Score=34.44 Aligned_cols=61 Identities=10% Similarity=0.055 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHhhc-----CCChHHHHHHHHHHhhcCCeeeeccccCCcccc
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIRFKS-----NLMPTQLNKILKQLETKKIIKAVKSVANIEYLT 89 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk~kt-----nL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYt 89 (117)
.+|++-..|+.++.+++ -.-..+|-.+. ++..++|-|.|+.|+..|+|..+..-.+...|.
T Consensus 16 r~T~qR~~Il~~l~~~~--h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y~ 81 (145)
T 3eyy_A 16 RLTPQRQLVLEAVDTLE--HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHLGHGAPTYH 81 (145)
T ss_dssp CCCHHHHHHHHHHHHHS--SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEECGGGCEEEE
T ss_pred CcCHHHHHHHHHHHhcC--CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 46788889999999886 56666654433 799999999999999999999998766666665
No 140
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=93.06 E-value=0.2 Score=33.93 Aligned_cols=51 Identities=14% Similarity=0.279 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 29 DNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 29 ~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
++-+..|++...+||. =+-..+|-.++|++-..|+|+|+.|-..+.|-+-+
T Consensus 18 ~d~eekVLe~LkeaG~-PlkageIae~~GvdKKeVdKaik~LKkEgkI~SPk 68 (80)
T 2lnb_A 18 GHLEQRILQVLTEAGS-PVKLAQLVKECQAPKRELNQVLYRMKKELKVSLTS 68 (80)
T ss_dssp HHHHHHHHHHHHHHTS-CEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred chHHHHHHHHHHHcCC-CCCHHHHHHHHCCCHHHHHHHHHHHHHcCCccCCC
Confidence 3457899999999987 78899999999999999999999999988876543
No 141
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=92.97 E-value=0.22 Score=37.28 Aligned_cols=53 Identities=9% Similarity=0.164 Sum_probs=43.4
Q ss_pred cCCCH-HHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 26 KDSDN-EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 26 ~~L~~-eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
+-|++ ....|+.++. +.++-..+|...+|+++++++++|+.|+..|||...+.
T Consensus 10 kaL~~~~rl~IL~~L~---~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~ 63 (202)
T 2p4w_A 10 DVLGNETRRRILFLLT---KRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVE 63 (202)
T ss_dssp HHHHSHHHHHHHHHHH---HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHhCCHHHHHHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEee
Confidence 33443 4556777774 34688999999999999999999999999999998775
No 142
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=92.97 E-value=0.21 Score=37.67 Aligned_cols=45 Identities=18% Similarity=0.165 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeee
Q psy7778 34 VVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAV 79 (117)
Q Consensus 34 lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~V 79 (117)
.|..++... ..++-..+|-.++||+.+++.++|++|+..|+|...
T Consensus 12 ~iL~~l~~~-~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~ 56 (249)
T 1mkm_A 12 EILDFIVKN-PGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK 56 (249)
T ss_dssp HHHHHHHHC-SSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEC
Confidence 466666554 347889999999999999999999999999999875
No 143
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=92.69 E-value=0.18 Score=32.99 Aligned_cols=61 Identities=11% Similarity=0.106 Sum_probs=45.4
Q ss_pred HHHHHHHHHhcCCcc--------cHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCcccccCcccc
Q psy7778 33 KVVYKIIEEAGNKGI--------WMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLTEGTVNA 95 (117)
Q Consensus 33 ~lVY~~Ie~AGn~GI--------WtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYtdg~~D~ 95 (117)
..||+.|...=-.|. -.++|-.+.|+..+++.++|+.|+..|+|....+ .|.|......+.
T Consensus 14 ~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~~g--~G~~v~~~~~~~ 82 (102)
T 1v4r_A 14 ADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSRGA--LGTVVEKNPIVI 82 (102)
T ss_dssp HHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEETT--TEEESCSCCCCC
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC--CeEEEccCCccc
Confidence 356666666544443 4789999999999999999999999999987654 366655544333
No 144
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=92.67 E-value=0.23 Score=35.87 Aligned_cols=53 Identities=21% Similarity=0.357 Sum_probs=46.2
Q ss_pred cCCCHHHHHHHHHHHHh-cCCcc--cHHHHHhhcCCC-hHHHHHHHHHHhhcCCeee
Q psy7778 26 KDSDNEEKVVYKIIEEA-GNKGI--WMRDIRFKSNLM-PTQLNKILKQLETKKIIKA 78 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~A-Gn~GI--WtkdIk~ktnL~-~~~l~K~LK~LE~k~LIK~ 78 (117)
+.||+.+..++..|.++ ...|+ ..++|-.++|+. ++.+++.++.|+.+++|..
T Consensus 2 ~~lt~~q~~i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~l~~~~~l~~ 58 (202)
T 1jhf_A 2 KALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALARKGVIEI 58 (202)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHHTTSEEE
T ss_pred CccCHHHHHHHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHHHHHCCCcee
Confidence 46899999999999887 45688 899999999999 9999999999999887763
No 145
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=92.56 E-value=0.11 Score=41.27 Aligned_cols=47 Identities=19% Similarity=0.133 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 32 EKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 32 E~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
++.|+++|. +..+-..+|-++|||..++++++++.|+..|+|.+...
T Consensus 22 ~~~il~~l~---~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~~~~~ 68 (380)
T 2hoe_A 22 ISRILKRIM---KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVEEKD 68 (380)
T ss_dssp CCCSHHHHH---HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHHH---cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecC
Confidence 456899998 45699999999999999999999999999999999753
No 146
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=92.46 E-value=0.41 Score=33.16 Aligned_cols=54 Identities=19% Similarity=0.248 Sum_probs=42.2
Q ss_pred ccCCCHHHHHHHHHHHHhcCC-------c----ccHHHHHhhcCCChHHHHHHHHHHhhcCCeee
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNK-------G----IWMRDIRFKSNLMPTQLNKILKQLETKKIIKA 78 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~-------G----IWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~ 78 (117)
+...+.++|+..-+.+-+... | +-..+|-.-.|+....++|+|+.|+.+|+|+.
T Consensus 132 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 196 (207)
T 2oz6_A 132 LAFLDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHV 196 (207)
T ss_dssp HHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 345677888876666554422 2 45689999999999999999999999999974
No 147
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=92.27 E-value=0.21 Score=37.65 Aligned_cols=46 Identities=15% Similarity=0.301 Sum_probs=38.4
Q ss_pred HHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 34 VVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 34 lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
.|..++... ..++-..+|-.++|||.+++.++|++|+..|+|....
T Consensus 10 ~iL~~l~~~-~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~~ 55 (241)
T 2xrn_A 10 SIMRALGSH-PHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEALG 55 (241)
T ss_dssp HHHHHHHTC-TTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEECG
T ss_pred HHHHHHHhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeC
Confidence 355566543 3479999999999999999999999999999998753
No 148
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=92.25 E-value=0.3 Score=35.08 Aligned_cols=55 Identities=15% Similarity=0.179 Sum_probs=45.6
Q ss_pred cccCCCHHHHHHHHHHHHhcCCc------ccHHHHHhhcCCChHHHHHHHHHHhhcCCeee
Q psy7778 24 KLKDSDNEEKVVYKIIEEAGNKG------IWMRDIRFKSNLMPTQLNKILKQLETKKIIKA 78 (117)
Q Consensus 24 k~~~L~~eE~lVY~~Ie~AGn~G------IWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~ 78 (117)
.+...+.++|+..-+.+.+...| +-..+|-.-.|+....++|+|+.|+..|+|..
T Consensus 158 ~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~ 218 (232)
T 1zyb_A 158 DEPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQDNGLIEL 218 (232)
T ss_dssp SCCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEE
T ss_pred HHhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHHHHHHHHHHHCCCEEe
Confidence 34556778998887777665543 67889999999999999999999999999973
No 149
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=92.06 E-value=0.54 Score=32.05 Aligned_cols=61 Identities=18% Similarity=0.314 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHhc-CCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCcccccC
Q psy7778 28 SDNEEKVVYKIIEEAG-NKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLTEG 91 (117)
Q Consensus 28 L~~eE~lVY~~Ie~AG-n~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYtdg 91 (117)
+++++.-+.+.|..+= ..|.|.+++-...+++.+.+...|+.|...|.|-++. .+-||+-+
T Consensus 1 ~~~~~~~l~~~i~~~~~~~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~---~~~~~~~~ 62 (121)
T 2pjp_A 1 FSEEQQAIWQKAEPLFGDEPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIV---KDRYYRND 62 (121)
T ss_dssp CCHHHHHHHHHHGGGCSSSCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE---TTEEEEHH
T ss_pred CCHHHHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEec---CCceECHH
Confidence 3555555566665554 4899999999999999999999999999999888765 34444433
No 150
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=91.90 E-value=0.27 Score=34.95 Aligned_cols=54 Identities=17% Similarity=0.139 Sum_probs=44.4
Q ss_pred ccCCCHHHHHHHHHHHHhcCCc------------ccHHHHHhhcCCChHHHHHHHHHHhhcCCeee
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKG------------IWMRDIRFKSNLMPTQLNKILKQLETKKIIKA 78 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~G------------IWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~ 78 (117)
+...+.++|+..-+.+.+...| +-..+|-.-.|+...+++|+|+.|+..|+|+.
T Consensus 130 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~ 195 (222)
T 1ft9_A 130 LMFHDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLIGSSRQTTSTALNSLIKEGYISR 195 (222)
T ss_dssp HHTHHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEE
T ss_pred HhcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEE
Confidence 3445668888887777775444 57799999999999999999999999999974
No 151
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=91.82 E-value=0.29 Score=33.57 Aligned_cols=56 Identities=18% Similarity=0.335 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCccc--------HHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCccccc
Q psy7778 33 KVVYKIIEEAGNKGIW--------MRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLTE 90 (117)
Q Consensus 33 ~lVY~~Ie~AGn~GIW--------tkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYtd 90 (117)
..||..|...=..|-| .++|-.+.|+..++|.++|+.|+..|+|....+ .|.|-.+
T Consensus 16 ~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g--~G~~V~~ 79 (125)
T 3neu_A 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAKRG--MGSFVTS 79 (125)
T ss_dssp HHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT--TEEEECC
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecC--CEEEEec
Confidence 3577777776555554 789999999999999999999999999988776 4666655
No 152
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=91.78 E-value=0.22 Score=32.84 Aligned_cols=48 Identities=8% Similarity=0.088 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHhhcCCChH-HHHHHHHHHhhcCCeeee
Q psy7778 30 NEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPT-QLNKILKQLETKKIIKAV 79 (117)
Q Consensus 30 ~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~-~l~K~LK~LE~k~LIK~V 79 (117)
+-...|+.++...| +.-.++|....++... .+++.|..||..|||...
T Consensus 11 ~~~~~IL~~Lk~~g--~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~ 59 (79)
T 1xmk_A 11 EIKEKICDYLFNVS--DSSALNLAKNIGLTKARDINAVLIDMERQGDVYRQ 59 (79)
T ss_dssp HHHHHHHHHHHHTC--CEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHHHHHHHHcC--CcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEec
Confidence 33457778999888 5779999999999999 999999999999999743
No 153
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=91.67 E-value=0.31 Score=34.75 Aligned_cols=53 Identities=8% Similarity=0.144 Sum_probs=42.3
Q ss_pred ccCCCHH-HHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 25 LKDSDNE-EKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 25 ~~~L~~e-E~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
++-|.++ -..|..++. +.++-..+|...++++++++++.|+.|+..|||...+
T Consensus 52 l~aL~~p~R~~IL~~L~---~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~ 105 (151)
T 3f6v_A 52 LEVAAEPTRRRLVQLLT---SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRK 105 (151)
T ss_dssp HHHHTSHHHHHHHHHGG---GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhCCHHHHHHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4444443 345666664 4568999999999999999999999999999999875
No 154
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=91.66 E-value=0.32 Score=33.77 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=34.9
Q ss_pred CCcccHHHHHhhc-CCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 44 NKGIWMRDIRFKS-NLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 44 n~GIWtkdIk~kt-nL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
+.++--.+|.... |+.++.|++.|+.||..|||....+-
T Consensus 46 ~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~ 85 (131)
T 1yyv_A 46 DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYP 85 (131)
T ss_dssp GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecC
Confidence 4568889999999 79999999999999999999987654
No 155
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=91.57 E-value=0.37 Score=26.04 Aligned_cols=45 Identities=9% Similarity=0.011 Sum_probs=34.5
Q ss_pred cCCCHHHH-HHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcC
Q psy7778 26 KDSDNEEK-VVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKK 74 (117)
Q Consensus 26 ~~L~~eE~-lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~ 74 (117)
..|+++++ .|..+. ..|.-.++|-..+|++.++|.+.++..+..|
T Consensus 4 ~~l~~~~~~~i~~~~----~~g~s~~~IA~~lgis~~Tv~~~~~~~~~~g 49 (51)
T 1tc3_C 4 SALSDTERAQLDVMK----LLNVSLHEMSRKISRSRHCIRVYLKDPVSYG 49 (51)
T ss_dssp CCCCHHHHHHHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHHCSTTTT
T ss_pred CCCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHhhHHhcC
Confidence 35777776 444443 3578899999999999999999998776543
No 156
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=91.46 E-value=0.52 Score=30.71 Aligned_cols=44 Identities=20% Similarity=0.197 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeee
Q psy7778 34 VVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAV 79 (117)
Q Consensus 34 lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~V 79 (117)
.|.++|.+.| -+-..+|-..++....+|.+-|..||.+|+|+.+
T Consensus 6 ~Il~~L~~~g--~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 6 QVRDLLALRG--RMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHSC--SBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcC--CCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 3556665544 5888999999999999999999999999999988
No 157
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=91.40 E-value=0.36 Score=33.80 Aligned_cols=54 Identities=13% Similarity=0.174 Sum_probs=43.4
Q ss_pred ccCCCHHHHHHHHHHHHhcCC-----cccHHHHHhhcCCChHHHHHHHHHHhhcCCeee
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNK-----GIWMRDIRFKSNLMPTQLNKILKQLETKKIIKA 78 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~-----GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~ 78 (117)
+...+.++++..-+.+.+... -+-..+|-.-.|+...+++|+|+.|+..|+|+.
T Consensus 143 ~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~ 201 (220)
T 3dv8_A 143 IMWKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHREVITRMLRYFQVEGLVKL 201 (220)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HhcCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 344667888777777665433 467789999999999999999999999999963
No 158
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=91.32 E-value=0.59 Score=30.46 Aligned_cols=56 Identities=16% Similarity=0.153 Sum_probs=42.0
Q ss_pred ccccCCCHHH-HHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 23 EKLKDSDNEE-KVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 23 ~k~~~L~~eE-~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
.-++.|.++- ..|+..+-.. .+.-..+|...+|++++.+++.|+.|+.. +|..-+.
T Consensus 19 ~~~~aL~~~~Rl~IL~~l~~~--~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~ 75 (99)
T 2zkz_A 19 ELLKTMAHPMRLKIVNELYKH--KALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQ 75 (99)
T ss_dssp HHHHHHCSHHHHHHHHHHHHH--SCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEE
T ss_pred HHHHHhCCHHHHHHHHHHHHC--CCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEe
Confidence 3455566543 3566444333 35888999999999999999999999999 9987653
No 159
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=91.25 E-value=0.34 Score=34.27 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=41.9
Q ss_pred ccCCCHHHHHHHHHHHHhcC------Cc------ccHHHHHhhcCCChHHHHHHHHHHhhcCCeee
Q psy7778 25 LKDSDNEEKVVYKIIEEAGN------KG------IWMRDIRFKSNLMPTQLNKILKQLETKKIIKA 78 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn------~G------IWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~ 78 (117)
+...+.++|+.+-+.+-+.. .| +-..+|-.-.|+...+++|+|+.|+..|+|..
T Consensus 144 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 209 (227)
T 3d0s_A 144 LIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLVGASRETVNKALADFAHRGWIRL 209 (227)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HhcCCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEe
Confidence 34466788877666655422 12 46789999999999999999999999999975
No 160
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=91.22 E-value=0.62 Score=34.29 Aligned_cols=54 Identities=20% Similarity=0.190 Sum_probs=43.6
Q ss_pred ccCCCHHHHHHHHHHHHhcCCc-----------ccHHHHHhhcCCChHHHHHHHHHHhhcCCeee
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKG-----------IWMRDIRFKSNLMPTQLNKILKQLETKKIIKA 78 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~G-----------IWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~ 78 (117)
+...+.++|+.+-+++-+...| +-..+|-.-.|+...+++|+|+.|+..|+|+.
T Consensus 185 l~~~~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~ 249 (260)
T 3kcc_A 185 LAFLLVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISA 249 (260)
T ss_dssp HHHCCHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 3446778888887777665433 34689999999999999999999999999974
No 161
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=91.15 E-value=0.57 Score=31.42 Aligned_cols=45 Identities=9% Similarity=0.192 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 34 VVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 34 lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
.|.++|.+.| -+-..+|-..+++...+|++-|..||.+|+|+.+.
T Consensus 6 ~Il~~L~~~g--~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 6 EVRDMLALQG--RMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHSC--SEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHcC--CCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 3556666544 58889999999999999999999999999999995
No 162
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=91.13 E-value=0.49 Score=37.76 Aligned_cols=54 Identities=19% Similarity=0.188 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCC-eeeecc
Q psy7778 28 SDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKI-IKAVKS 81 (117)
Q Consensus 28 L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~L-IK~VKs 81 (117)
|++-.+.|+.++.++.+.-+--.+|-.+.|+..+.|.|.++.|+..|+ |.++++
T Consensus 1 M~~~~~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~~i~~~~~ 55 (323)
T 3rkx_A 1 MSKYSQDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEGCKIDSVNH 55 (323)
T ss_dssp --CHHHHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEEETT
T ss_pred CchHHHHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhcCCeEEEeCC
Confidence 344556788899888777899999999999999999999999999999 555544
No 163
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=91.07 E-value=0.4 Score=33.31 Aligned_cols=55 Identities=13% Similarity=0.167 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCCcc--------cHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCccccc
Q psy7778 34 VVYKIIEEAGNKGI--------WMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLTE 90 (117)
Q Consensus 34 lVY~~Ie~AGn~GI--------WtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYtd 90 (117)
.||..|...=..|- -.++|-.+.|+..+.|.++|+.|+..|+|....+. |.|-..
T Consensus 8 ~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~~g~--G~~V~~ 70 (129)
T 2ek5_A 8 QIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKRGI--GMFVSA 70 (129)
T ss_dssp HHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEETTT--EEEECT
T ss_pred HHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecCC--EEEEec
Confidence 56777766555554 46799999999999999999999999999877653 555444
No 164
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=91.02 E-value=0.42 Score=33.92 Aligned_cols=54 Identities=9% Similarity=0.142 Sum_probs=42.3
Q ss_pred ccCCCHHHHHHHHHHH---HhcC--------CcccHHHHHhhcCCChHHHHHHHHHHhhcCCeee
Q psy7778 25 LKDSDNEEKVVYKIIE---EAGN--------KGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKA 78 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie---~AGn--------~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~ 78 (117)
+...+.++|+.+-+++ ..|. --+-..+|-.-.|+...+++|+|+.|+..|+|+.
T Consensus 148 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 212 (232)
T 2gau_A 148 LTQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAIRTLSTFVSERMLAL 212 (232)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HhcCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEee
Confidence 4456778887776655 3331 2356789999999999999999999999999974
No 165
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=90.97 E-value=0.4 Score=32.25 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=42.6
Q ss_pred HHHHHHHHhcCCccc--------HHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCcccccC
Q psy7778 34 VVYKIIEEAGNKGIW--------MRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLTEG 91 (117)
Q Consensus 34 lVY~~Ie~AGn~GIW--------tkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYtdg 91 (117)
.||+.|...=..|-| .++|-.+.|+..+++.++|+.|+..|+|..+.+ .|.|-.+.
T Consensus 13 ~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~~~--~G~~V~~~ 76 (113)
T 3tqn_A 13 QLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKRRG--LGMLVKAG 76 (113)
T ss_dssp HHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT--TEEEECTT
T ss_pred HHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecC--CeEEEeCC
Confidence 567777665444444 679999999999999999999999999977654 34444443
No 166
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=90.97 E-value=0.4 Score=31.99 Aligned_cols=54 Identities=19% Similarity=0.254 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhcCCccc-HHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCC
Q psy7778 32 EKVVYKIIEEAGNKGIW-MRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANI 85 (117)
Q Consensus 32 E~lVY~~Ie~AGn~GIW-tkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg 85 (117)
+..|..++.....-|-- .+.|....++...+|..+|+.||.+|||........|
T Consensus 11 ~~~IL~~L~~~~~~gyel~~~l~~~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~ 65 (108)
T 3l7w_A 11 EYLILAIVSKHDSYGYDISQTIKLIASIKESTLYPILKKLEKAGYLSTYTQEHQG 65 (108)
T ss_dssp HHHHHHHHHHSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEEEEETT
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHhCCCcChHHHHHHHHHHCCCeEEEeecCCC
Confidence 56777777753323322 2344445799999999999999999999988654333
No 167
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=90.95 E-value=0.3 Score=34.18 Aligned_cols=62 Identities=8% Similarity=0.067 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHhhc-----CCChHHHHHHHHHHhhcCCeeeeccccCCcccc
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIRFKS-----NLMPTQLNKILKQLETKKIIKAVKSVANIEYLT 89 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk~kt-----nL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYt 89 (117)
.+|++-+.|+.++.+++. -+-..+|-.+. ++..++|-|.|+.|+..|+|..+..-.+...|.
T Consensus 11 r~T~qR~~Il~~L~~~~~-h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~ 77 (139)
T 3mwm_A 11 RATRQRAAVSAALQEVEE-FRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVYR 77 (139)
T ss_dssp HHHHHHHHHHHHHTTCSS-CEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEE
T ss_pred ccCHHHHHHHHHHHhCCC-CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEE
Confidence 356677789999987653 56666665543 799999999999999999999998766666664
No 168
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=90.91 E-value=0.48 Score=32.67 Aligned_cols=56 Identities=18% Similarity=0.355 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCCcc--------cHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCccccc
Q psy7778 33 KVVYKIIEEAGNKGI--------WMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLTE 90 (117)
Q Consensus 33 ~lVY~~Ie~AGn~GI--------WtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYtd 90 (117)
..||..|...=..|. -.++|-.+.|+..++|.++|+.|+..|+|....+ .|.|-..
T Consensus 14 ~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~~g--~G~~V~~ 77 (126)
T 3by6_A 14 LQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPG--KGTFITG 77 (126)
T ss_dssp HHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT--TEEEECS
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEecC--CeEEEcc
Confidence 357887777655555 4789999999999999999999999999987664 3555544
No 169
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=90.89 E-value=0.29 Score=34.61 Aligned_cols=54 Identities=13% Similarity=0.204 Sum_probs=42.6
Q ss_pred ccCCCHHHHHHHHHHHHhcCC------------cccHHHHHhhcCCChHHHHHHHHHHhhcCCeee
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNK------------GIWMRDIRFKSNLMPTQLNKILKQLETKKIIKA 78 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~------------GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~ 78 (117)
+...+.++|+.+-+.+.+... -+-..+|-.-.|+...+++|+|+.|+..|+|+.
T Consensus 134 l~~~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 199 (220)
T 2fmy_A 134 LVFKDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALMLGTTRQTVSVLLNDFKKMGILER 199 (220)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEE
Confidence 334566888777666655422 356789999999999999999999999999974
No 170
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=90.71 E-value=0.44 Score=34.51 Aligned_cols=56 Identities=9% Similarity=0.195 Sum_probs=44.3
Q ss_pred cccCCCHHHHHHHHHHHHhcCC------------cccHHHHHhhcCCChHHHHHHHHHHhhcCCeeee
Q psy7778 24 KLKDSDNEEKVVYKIIEEAGNK------------GIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAV 79 (117)
Q Consensus 24 k~~~L~~eE~lVY~~Ie~AGn~------------GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~V 79 (117)
.+...+.++|+..-+.+-+... -+-..+|-.-.|+...+++|+|+.|+..|+|+.-
T Consensus 143 ~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~ 210 (250)
T 3e6c_C 143 EMNTYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEITGVHHVTVSRVLASLKRENILDKK 210 (250)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHhcCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeC
Confidence 3556777888877666654322 3467899999999999999999999999999753
No 171
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=90.48 E-value=0.38 Score=34.91 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=42.9
Q ss_pred ccCCCHHHHHHHHHHHHhcC------Cc------ccHHHHHhhcCCChHHHHHHHHHHhhcCCeee
Q psy7778 25 LKDSDNEEKVVYKIIEEAGN------KG------IWMRDIRFKSNLMPTQLNKILKQLETKKIIKA 78 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn------~G------IWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~ 78 (117)
+...+.++|+..-+++-+.. .| +-..+|-.-+|+...+++|+|+.|+.+|+|.-
T Consensus 160 l~~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~ 225 (243)
T 3la7_A 160 LAHRDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAIGSTRVTVTRLLGDLREKKMISI 225 (243)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HhcCCHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEE
Confidence 44567788887767665432 22 45689999999999999999999999999974
No 172
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=90.40 E-value=0.79 Score=27.42 Aligned_cols=46 Identities=7% Similarity=0.084 Sum_probs=38.5
Q ss_pred ccccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhh
Q psy7778 23 EKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLET 72 (117)
Q Consensus 23 ~k~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~ 72 (117)
.....||+.|+.|+.++ -.|.-.++|-...|++.+++.+.++.+..
T Consensus 7 ~~~~~L~~~e~~il~~~----~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 7 QSKPLLTKREREVFELL----VQDKTTKEIASELFISEKTVRNHISNAMQ 52 (74)
T ss_dssp -CCCCCCHHHHHHHHHH----TTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH----HcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34678999999998886 36779999999999999999998888654
No 173
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=90.40 E-value=0.47 Score=36.33 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=38.1
Q ss_pred CCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCcccccC
Q psy7778 44 NKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLTEG 91 (117)
Q Consensus 44 n~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYtdg 91 (117)
+..+=+++|..+.|+..+.++..++.|+.+|||..-+ +|...|+-
T Consensus 28 ~~~V~~~~LA~~LgvS~~SV~~~lkkL~e~GLV~~~~---~Gv~LTe~ 72 (200)
T 2p8t_A 28 KEPLGRKQISERLELGEGSVRTLLRKLSHLDIIRSKQ---RGHFLTLK 72 (200)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-----CEEECHH
T ss_pred cCCccHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeC---CCeEECHH
Confidence 4679999999999999999999999999999997766 67666654
No 174
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=90.38 E-value=0.051 Score=42.39 Aligned_cols=51 Identities=12% Similarity=0.232 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHh-cCCcccHHHHHhhc-CCChHHHHHHHHHHhhcCCee
Q psy7778 27 DSDNEEKVVYKIIEEA-GNKGIWMRDIRFKS-NLMPTQLNKILKQLETKKIIK 77 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~A-Gn~GIWtkdIk~kt-nL~~~~l~K~LK~LE~k~LIK 77 (117)
+|++-...||++|++. .++||-..+|..+. +++...|.++|..|...|+|=
T Consensus 204 ~~~~~~~~Vl~~i~~~~~~~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IY 256 (270)
T 2pi2_A 204 GLTVAQNQVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIY 256 (270)
T ss_dssp -----------------------------------------------------
T ss_pred CCCHHHHHHHHHHHhCCCccCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEe
Confidence 5777788999999986 56899999999999 699999999999999999984
No 175
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=90.02 E-value=0.59 Score=40.27 Aligned_cols=57 Identities=12% Similarity=0.030 Sum_probs=48.6
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhh-----cCCeeeeccccCCccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLET-----KKIIKAVKSVANIEYL 88 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~-----k~LIK~VKsV~gg~wY 88 (117)
..++..+.+|+.+|.+.+ -|-.++|+..++++...+.+.|+.|.. ++||.... +.|+
T Consensus 426 ~~~~~~~~~iL~~l~~~~--~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~g----~~y~ 487 (583)
T 3lmm_A 426 RQDDYRIAIVLYLLFQRP--FITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAHD----GVWL 487 (583)
T ss_dssp GTTCHHHHHHHHHHHHSS--SBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEET----TEEE
T ss_pred cccchhHHHHHHHHHHCC--CcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEeC----CEEE
Confidence 456667889999888754 599999999999999999999999988 88999974 6666
No 176
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=89.93 E-value=0.55 Score=32.73 Aligned_cols=51 Identities=10% Similarity=0.265 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHhcC-----CcccHHHHHhhcCCChHHHHHHHHHHhhcCCeee
Q psy7778 28 SDNEEKVVYKIIEEAGN-----KGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKA 78 (117)
Q Consensus 28 L~~eE~lVY~~Ie~AGn-----~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~ 78 (117)
.+.++|+.+-+.+-+.+ --+-..+|-.-.|+...+++|+|+.|+..|+|+.
T Consensus 140 ~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 195 (216)
T 4ev0_A 140 EEARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRETVSRVLHALAEEGVVRL 195 (216)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 44577777767665421 2356899999999999999999999999999973
No 177
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=89.40 E-value=0.85 Score=29.79 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=38.5
Q ss_pred ccccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhc
Q psy7778 23 EKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK 73 (117)
Q Consensus 23 ~k~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k 73 (117)
.....||+.|+.|+.++. +|.-.++|-...|+...+|...++.+-.|
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~----~G~s~~eIA~~L~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVE----KGFTNQEIADALHLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ----CCCHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 457789999999999975 78999999999999999999888887554
No 178
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=89.40 E-value=0.73 Score=32.49 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=33.5
Q ss_pred CCcccHHHHHhhc-CCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 44 NKGIWMRDIRFKS-NLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 44 n~GIWtkdIk~kt-nL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
....=-.+|.... ++.+++|++.|+.||..|||.....
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~ 75 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVY 75 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEec
Confidence 4456778999999 9999999999999999999987654
No 179
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=88.99 E-value=0.39 Score=37.03 Aligned_cols=46 Identities=4% Similarity=0.122 Sum_probs=38.3
Q ss_pred HHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 34 VVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 34 lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
.|..++..++ .++-..+|-.++|||.+++.++|++|+..|++....
T Consensus 34 ~IL~~l~~~~-~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~~~ 79 (275)
T 3mq0_A 34 RILDLVAGSP-RDLTAAELTRFLDLPKSSAHGLLAVMTELDLLARSA 79 (275)
T ss_dssp HHHHHHHHCS-SCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEECT
T ss_pred HHHHHHhhCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECC
Confidence 5677776654 689999999999999999999999999999998764
No 180
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=88.99 E-value=0.95 Score=35.19 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCee-ee
Q psy7778 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIK-AV 79 (117)
Q Consensus 31 eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK-~V 79 (117)
+++++..+-.---..|+-.++|-.+.|+...+|+|-|+.|+..|+|+ .+
T Consensus 6 ~~~~~~~ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~iri 55 (315)
T 2w48_A 6 DIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAI 55 (315)
T ss_dssp HHHHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEe
Confidence 56677777777788999999999999999999999999999999998 66
No 181
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=88.78 E-value=0.8 Score=32.14 Aligned_cols=51 Identities=16% Similarity=0.249 Sum_probs=40.7
Q ss_pred CCHHHHHHHHHHHHhcC---------CcccHHHHHhhcCCChHHHHHHHHHHhhcCCeee
Q psy7778 28 SDNEEKVVYKIIEEAGN---------KGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKA 78 (117)
Q Consensus 28 L~~eE~lVY~~Ie~AGn---------~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~ 78 (117)
.+.++|+..-+++.+.. --+-..+|-.-.|+...+++|+|+.|+..|+|..
T Consensus 151 ~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~ 210 (227)
T 3dkw_A 151 KNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHL 210 (227)
T ss_dssp HHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEE
T ss_pred CCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEe
Confidence 34577877766666643 2345689999999999999999999999999964
No 182
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=88.60 E-value=0.61 Score=33.03 Aligned_cols=47 Identities=15% Similarity=0.225 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCCc-----------ccHHHHHhhcCCChHHHHHHHHHHhhcCCeee
Q psy7778 32 EKVVYKIIEEAGNKG-----------IWMRDIRFKSNLMPTQLNKILKQLETKKIIKA 78 (117)
Q Consensus 32 E~lVY~~Ie~AGn~G-----------IWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~ 78 (117)
+|+..-+.+.+...| +-..+|-.-.|+...+++|+|+.|+..|+|+.
T Consensus 150 ~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~ 207 (231)
T 3e97_A 150 AALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMARTSSSRETVSRVLKRLEAHNILEV 207 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEe
Confidence 776666665553222 46799999999999999999999999999973
No 183
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=88.01 E-value=1.5 Score=26.73 Aligned_cols=49 Identities=12% Similarity=0.213 Sum_probs=39.8
Q ss_pred ccccCCCHHHHHHHHHHH-HhcCCcccHHHHHhhcCCChHHHHH----HHHHHh
Q psy7778 23 EKLKDSDNEEKVVYKIIE-EAGNKGIWMRDIRFKSNLMPTQLNK----ILKQLE 71 (117)
Q Consensus 23 ~k~~~L~~eE~lVY~~Ie-~AGn~GIWtkdIk~ktnL~~~~l~K----~LK~LE 71 (117)
..+..||+.|+.|+.+.. -.|..|.-.++|-...|++..++.+ +++.|.
T Consensus 6 ~~l~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 6 KALSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SSTTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 357789999999988877 4666899999999999999998665 555565
No 184
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=88.01 E-value=1.1 Score=28.38 Aligned_cols=47 Identities=13% Similarity=0.239 Sum_probs=39.1
Q ss_pred cccccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhh
Q psy7778 22 NEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLET 72 (117)
Q Consensus 22 a~k~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~ 72 (117)
...+..||+.|+.|+.++ -.|.-.++|-...|+..++|.+.++....
T Consensus 16 ~~~~~~Lt~~e~~vl~l~----~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 16 ERDVNQLTPRERDILKLI----AQGLPNKMIARRLDITESTVKVHVKHMLK 62 (82)
T ss_dssp -CCGGGSCHHHHHHHHHH----TTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 346778999999999885 37899999999999999998888776644
No 185
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=87.96 E-value=0.81 Score=38.08 Aligned_cols=52 Identities=13% Similarity=0.207 Sum_probs=46.1
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
..|+++|..||+.+. ...+-..+|-.++|++...+..+|=.||-+|+|.++.
T Consensus 324 ~~l~~~~~~vl~~l~---~~~~~~D~l~~~~gl~~~~v~~~L~~LEl~G~v~~~~ 375 (382)
T 3maj_A 324 EPDTGDRTRILALLG---PSPVGIDDLIRLSGISPAVVRTILLELELAGRLERHG 375 (382)
T ss_dssp CCCTTHHHHHHHHCC---SSCEEHHHHHHHHCCCHHHHHHHHHHHHHTTCCEECT
T ss_pred CCCChHHHHHHHhhC---CCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEeCC
Confidence 358889999999884 4678899999999999999999999999999998764
No 186
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=87.67 E-value=0.37 Score=36.50 Aligned_cols=36 Identities=11% Similarity=0.169 Sum_probs=33.5
Q ss_pred CCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeee
Q psy7778 44 NKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAV 79 (117)
Q Consensus 44 n~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~V 79 (117)
+.++-..+|-.++|++.+++.++|++|+..|+|..-
T Consensus 27 ~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~~ 62 (257)
T 2g7u_A 27 RPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAGS 62 (257)
T ss_dssp CSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC
Confidence 468899999999999999999999999999999874
No 187
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=87.28 E-value=1.1 Score=29.11 Aligned_cols=45 Identities=13% Similarity=0.279 Sum_probs=35.0
Q ss_pred ccccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHh
Q psy7778 23 EKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71 (117)
Q Consensus 23 ~k~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE 71 (117)
..+..||+.|+.|+.++ -.|.-.++|-...|+...+|...++...
T Consensus 23 ~~l~~Lt~~e~~vl~l~----~~g~s~~eIA~~l~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 23 DPLSGLTDQERTLLGLL----SEGLTNKQIADRMFLAEKTVKNYVSRLL 67 (95)
T ss_dssp ----CCCHHHHHHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45778999999999886 4688999999999999998777666553
No 188
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=87.26 E-value=0.11 Score=37.03 Aligned_cols=54 Identities=15% Similarity=0.257 Sum_probs=2.1
Q ss_pred ccCCCHHHHHHHHHHHHhcCCc-----ccHHHHHhhcCCChHHHHHHHHHHhhcCCeee
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKG-----IWMRDIRFKSNLMPTQLNKILKQLETKKIIKA 78 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~G-----IWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~ 78 (117)
+...+.++|+.+-+.+.+...| +-..+|-.-.|+....++|+|+.|+..|+|+.
T Consensus 138 l~~~~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I~~ 196 (213)
T 1o5l_A 138 LTTKTLREKLMNFLVRHMNEKRELTLPVTLEELSRLFGCARPALSRVFQELEREGYIEK 196 (213)
T ss_dssp HHCC-------------------------------------------------------
T ss_pred HhhCCHHHHHHHHHHHHhccCCcccCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCeEEE
Confidence 4456678888877777776555 56778888899999999999999999999964
No 189
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=86.94 E-value=0.77 Score=30.80 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=34.6
Q ss_pred cHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCcccc
Q psy7778 48 WMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLT 89 (117)
Q Consensus 48 WtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYt 89 (117)
-.++|-.+.|+..++|.++|+.|+..|+|....+=..|.|-+
T Consensus 45 s~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V~ 86 (102)
T 2b0l_A 45 VASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIK 86 (102)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEEE
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEEe
Confidence 789999999999999999999999999998765222354444
No 190
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=86.79 E-value=2 Score=25.85 Aligned_cols=46 Identities=11% Similarity=0.088 Sum_probs=37.0
Q ss_pred ccCCCHHHHHHHHHHH-HhcCCcccHHHHHhhcCCChHHHHHHHHHH
Q psy7778 25 LKDSDNEEKVVYKIIE-EAGNKGIWMRDIRFKSNLMPTQLNKILKQL 70 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie-~AGn~GIWtkdIk~ktnL~~~~l~K~LK~L 70 (117)
+..||+.|+.|+.+.. -.|-.|.-.++|-..+|++..++...+...
T Consensus 3 l~~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra 49 (68)
T 2p7v_B 3 LAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKA 49 (68)
T ss_dssp SCCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5679999999988776 344589999999999999999877665543
No 191
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=86.72 E-value=0.67 Score=34.26 Aligned_cols=57 Identities=12% Similarity=0.150 Sum_probs=42.9
Q ss_pred ccCCCHHHHHHHHHHH-HhcC--CcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 25 LKDSDNEEKVVYKIIE-EAGN--KGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie-~AGn--~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
+..+---+.-.|+-|. +-.+ +=|---.|-.+.++.-+.-.++|+.||++|+|+.|-.
T Consensus 39 ~nn~VlfDk~tydKL~KEVpk~gKlITpsvlseRlkI~gSLARkaLreL~~kGlIk~V~k 98 (143)
T 2xzm_8 39 VNHAVFIEKKNVESIINNPSKVGKVLTVSTVVEKLKVNGSLARQLMRTMADRKLVEKVAK 98 (143)
T ss_dssp CCCBSCCCHHHHHHHHTCCTTSCSEECHHHHHHHHCBCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HhcceeecHHHHHHHHHHhcccceeecHHHHHHHhcchHHHHHHHHHHHHHCCCEEEEec
Confidence 3333333345566555 4444 4688889999999999999999999999999999943
No 192
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=86.70 E-value=2.2 Score=30.21 Aligned_cols=52 Identities=15% Similarity=0.185 Sum_probs=41.9
Q ss_pred cccCCCHHHHHHHHHHHHhcCCc--------ccHHHHHhhcCCChHHHHHHHHHHhhcCC
Q psy7778 24 KLKDSDNEEKVVYKIIEEAGNKG--------IWMRDIRFKSNLMPTQLNKILKQLETKKI 75 (117)
Q Consensus 24 k~~~L~~eE~lVY~~Ie~AGn~G--------IWtkdIk~ktnL~~~~l~K~LK~LE~k~L 75 (117)
.+...+.++|+.+-+.+.+...| +-..+|-.-.|+...+++|+|+.|+..|+
T Consensus 148 ~l~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~sr~tvsR~l~~L~~~gi 207 (237)
T 3fx3_A 148 QLKAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGMKPESLSRAFSRLKAAGV 207 (237)
T ss_dssp HCCCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTCCHHHHHHHHHHHGGGTE
T ss_pred HHhcCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHCCe
Confidence 45567789998888888765433 33679999999999999999999999994
No 193
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=86.27 E-value=0.86 Score=31.31 Aligned_cols=61 Identities=21% Similarity=0.326 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHHHhcCCcc--------cHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCccccc
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGI--------WMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLTE 90 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GI--------WtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYtd 90 (117)
++|-.+ .||+.|..+=-.|- -.++|-.+.|+..++|.++|+.|+..|||....+. |.|-.+
T Consensus 12 ~~PlY~-QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~~g~--G~~V~~ 80 (134)
T 4ham_A 12 QLPIYE-QIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITVKGK--GTFIAN 80 (134)
T ss_dssp SSCHHH-HHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTT--EEEECC
T ss_pred CCCHHH-HHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEEcCc--EEEEeC
Confidence 344444 46777777544443 45789999999999999999999999999887763 555543
No 194
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=85.79 E-value=0.96 Score=34.30 Aligned_cols=37 Identities=5% Similarity=0.164 Sum_probs=34.1
Q ss_pred CCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 44 NKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 44 n~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
+.++-..+|-.++||+.+++.++|++|+..|+|....
T Consensus 36 ~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~~~ 72 (260)
T 2o0y_A 36 HPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTSRA 72 (260)
T ss_dssp BSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEECT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECC
Confidence 4689999999999999999999999999999998753
No 195
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=84.95 E-value=0.89 Score=32.08 Aligned_cols=66 Identities=15% Similarity=0.119 Sum_probs=45.7
Q ss_pred cccCCCHHHHHHHHHHH-Hhc-CCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCcccc
Q psy7778 24 KLKDSDNEEKVVYKIIE-EAG-NKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLT 89 (117)
Q Consensus 24 k~~~L~~eE~lVY~~Ie-~AG-n~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYt 89 (117)
++..+---+...|+-|. +-. .+=|---.|-.+.++.-+.-.++|+.|+++|+|+.|..=+.-.=||
T Consensus 35 K~nn~VlfDk~t~dkl~KEVpk~KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYT 102 (108)
T 3u5c_Z 35 RAQHAVILDQEKYDRILKEVPTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYT 102 (108)
T ss_dssp -CCSCSSCTTHHHHHHHHHCSSCSSBSHHHHHHTTCCCTTHHHHHHHHHSSSSSCEEEECCSSCCEEE
T ss_pred HhhcceeeCHHHHHHHHHHccCCeEEeHHHhhhhhhhhHHHHHHHHHHHHHCCCEEEEecCCCEEEEe
Confidence 34444332344555553 333 3667888899999999999999999999999999995333334454
No 196
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=84.91 E-value=1.7 Score=32.57 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCccc--------HHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCcccccC
Q psy7778 33 KVVYKIIEEAGNKGIW--------MRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLTEG 91 (117)
Q Consensus 33 ~lVY~~Ie~AGn~GIW--------tkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYtdg 91 (117)
..||+.|.+.=..|.| -++|..+.|+..+++.++|..|+..|+|....+. |.|-.+.
T Consensus 12 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~--G~~V~~~ 76 (236)
T 3edp_A 12 EVIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRKNGV--GLYVQPK 76 (236)
T ss_dssp HHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTT--EEEECCC
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEECCc--eEEEccC
Confidence 3566777665555544 6799999999999999999999999999888764 4444443
No 197
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=84.84 E-value=1.1 Score=28.65 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=38.7
Q ss_pred ccccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhh
Q psy7778 23 EKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLET 72 (117)
Q Consensus 23 ~k~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~ 72 (117)
..+..||+.|+.|+.++ -.|.-.++|-...|++.++|...++....
T Consensus 25 ~~l~~Lt~~e~~vl~l~----~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 25 ELYEMLTEREMEILLLI----AKGYSNQEIASASHITIKTVKTHVSNILS 70 (91)
T ss_dssp CTGGGCCSHHHHHHHHH----HTTCCTTHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 46788999999999885 36899999999999999998877766644
No 198
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=84.79 E-value=3 Score=29.89 Aligned_cols=63 Identities=10% Similarity=0.091 Sum_probs=45.2
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHH----Hhh---cCCChHHHHHHHHHHhhcCCeeeeccccCCcccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDI----RFK---SNLMPTQLNKILKQLETKKIIKAVKSVANIEYLT 89 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdI----k~k---tnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYt 89 (117)
-.+|++-+.|+.++.+++ .-+--.+| +.+ .++..++|-|.|+.|+..|+|..+..-.+...|.
T Consensus 29 ~r~T~qR~~IL~~L~~~~-~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~~~~~~~~Y~ 98 (162)
T 4ets_A 29 LKYTKQREVLLKTLYHSD-THYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYE 98 (162)
T ss_dssp CCCCHHHHHHHHHHHSCC-SCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC-----CCEE
T ss_pred CCCCHHHHHHHHHHHhCC-CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCceEEE
Confidence 346888889999998875 44555544 333 5799999999999999999999997655545563
No 199
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=84.45 E-value=1.6 Score=32.75 Aligned_cols=57 Identities=16% Similarity=0.096 Sum_probs=40.1
Q ss_pred cccCCCHHHHHHHHHHHH---hcCCcccH-------HHHHhhcCCCh---HHHHHHHHHHhhcCCeeeec
Q psy7778 24 KLKDSDNEEKVVYKIIEE---AGNKGIWM-------RDIRFKSNLMP---TQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 24 k~~~L~~eE~lVY~~Ie~---AGn~GIWt-------kdIk~ktnL~~---~~l~K~LK~LE~k~LIK~VK 80 (117)
.+.+|++.++.++..|-. .|+..+-. ..+....|.++ +.+..+|+.|+..|+|....
T Consensus 280 ~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 280 IILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp HHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 456899999988888875 35443335 45566666554 89999999999999998753
No 200
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=84.41 E-value=1.1 Score=34.10 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=34.0
Q ss_pred CCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 44 NKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 44 n~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
+.|+-..+|-.++|||.+++.+.|++|+..|+|....
T Consensus 19 ~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~~~ 55 (260)
T 3r4k_A 19 RLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQVE 55 (260)
T ss_dssp BSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEECS
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEcC
Confidence 4789999999999999999999999999999997643
No 201
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=84.30 E-value=2.5 Score=26.78 Aligned_cols=46 Identities=15% Similarity=0.115 Sum_probs=38.2
Q ss_pred ccccCCCHHHHHHHHHHH-HhcCCcccHHHHHhhcCCChHHHHHHHH
Q psy7778 23 EKLKDSDNEEKVVYKIIE-EAGNKGIWMRDIRFKSNLMPTQLNKILK 68 (117)
Q Consensus 23 ~k~~~L~~eE~lVY~~Ie-~AGn~GIWtkdIk~ktnL~~~~l~K~LK 68 (117)
..+..||+.|+.|+.+.. -.++.|.-.++|-..+|++..+|...+.
T Consensus 14 ~~l~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ 60 (87)
T 1tty_A 14 KVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEV 60 (87)
T ss_dssp HHHTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHH
Confidence 457889999999988877 3677999999999999999988665443
No 202
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=84.16 E-value=0.7 Score=35.53 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=41.0
Q ss_pred cCCCH-HHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeee
Q psy7778 26 KDSDN-EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAV 79 (117)
Q Consensus 26 ~~L~~-eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~V 79 (117)
+-|.+ -...|+.++.. ..+-..+|...+++++++++++|+.|+..|||...
T Consensus 7 kaL~~~~R~~IL~~L~~---g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~~ 58 (232)
T 2qlz_A 7 YILGNKVRRDLLSHLTC---MECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQSY 58 (232)
T ss_dssp HHHTSHHHHHHHHHHTT---TTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCCHHHHHHHHHHHh---CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 33443 34568888863 35777899999999999999999999999999984
No 203
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=84.09 E-value=3.9 Score=29.86 Aligned_cols=51 Identities=10% Similarity=0.144 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHhhcC-CChHHHHHHHHHHhhcCCeeeecc
Q psy7778 31 EEKVVYKIIEEAGNKGIWMRDIRFKSN-LMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 31 eE~lVY~~Ie~AGn~GIWtkdIk~ktn-L~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
.-..|++.+-.....-.-..+|....+ |.+++|.+.|+.|+..|+|+.+.-
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~~ 81 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEKIPV 81 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEeec
Confidence 344777777766433466778888888 999999999999999999998853
No 204
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=83.62 E-value=1.8 Score=31.37 Aligned_cols=57 Identities=7% Similarity=0.071 Sum_probs=44.2
Q ss_pred cccccCCCHHHH-HHHHHHHHhcCCcccHHHHHhhcC-CChHHHHHHHHHHhhcCCeeeecc
Q psy7778 22 NEKLKDSDNEEK-VVYKIIEEAGNKGIWMRDIRFKSN-LMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 22 a~k~~~L~~eE~-lVY~~Ie~AGn~GIWtkdIk~ktn-L~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
+.-++-|.+.-| .|.+++ .+.+.-..+|-...+ ++++++++.|+.|+.-|||+.++-
T Consensus 14 ~~~~~~La~P~Rl~il~~L---~~~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~aglv~~~~e 72 (182)
T 4g6q_A 14 SSLVDLLHHPLRWRITQLL---IGRSLTTRELAELLPDVATTTLYRQVGILVKAGVLMVTAE 72 (182)
T ss_dssp HHHHHHTTSHHHHHHHHHT---TTSCEEHHHHHHHCTTBCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred HHHHHHhCCHHHHHHHHHH---HhCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 345566666555 455555 345788999999986 999999999999999999998764
No 205
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=83.41 E-value=0.22 Score=39.45 Aligned_cols=51 Identities=14% Similarity=0.033 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCee-eec
Q psy7778 28 SDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIK-AVK 80 (117)
Q Consensus 28 L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK-~VK 80 (117)
++..+..|...|.. +.|+-.++|-.++++...+++|.|+.||.+|+|+ .+.
T Consensus 18 ~~~r~~~iL~~l~~--~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~~Glv~~~~~ 69 (345)
T 2o0m_A 18 VLQERFQILRNIYW--MQPIGRRSLSETMGITERVLRTETDVLKQLNLIEPSKS 69 (345)
T ss_dssp ------------------------------------------------------
T ss_pred hhHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec
Confidence 44445566666655 4589999999999999999999999999999997 543
No 206
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=83.41 E-value=3 Score=29.48 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHhhc--------CCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 31 EEKVVYKIIEEAGNKGIWMRDIRFKS--------NLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 31 eE~lVY~~Ie~AGn~GIWtkdIk~kt--------nL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
-+..|..++.+ + ..---+|.... ++...+|..+|+.||.+|||.....-
T Consensus 42 ~~~~IL~~L~~-~--~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~~~ 98 (145)
T 1xma_A 42 VDTIILSLLIE-G--DSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGE 98 (145)
T ss_dssp HHHHHHHHHHH-C--CEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred HHHHHHHHHHh-C--CCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEEec
Confidence 46788888865 3 24444554444 69999999999999999999987654
No 207
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=83.30 E-value=1.2 Score=33.89 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=33.6
Q ss_pred CCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeee
Q psy7778 44 NKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAV 79 (117)
Q Consensus 44 n~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~V 79 (117)
..++-..+|-.++|||.+++.++|++|+..|++..-
T Consensus 34 ~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~~ 69 (265)
T 2ia2_A 34 NQRRTLSDVARATDLTRATARRFLLTLVELGYVATD 69 (265)
T ss_dssp CSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEES
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 478999999999999999999999999999999874
No 208
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=83.29 E-value=1.3 Score=30.16 Aligned_cols=47 Identities=17% Similarity=0.255 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCCcccHHHHHhhc------CCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 32 EKVVYKIIEEAGNKGIWMRDIRFKS------NLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 32 E~lVY~~Ie~AGn~GIWtkdIk~kt------nL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
+.+|..++.....-| -+|.... ++.+.+|..+|+.||.+|||.+...
T Consensus 11 ~~~IL~~L~~~~~~G---yei~~~l~~~~~~~is~gtlY~~L~rLe~~GlI~~~~~ 63 (115)
T 4esb_A 11 EGCILYIISQEEVYG---YELSTKLNKHGFTFVSEGSIYPLLLRMQKEKLIEGTLK 63 (115)
T ss_dssp HHHHHHHHHHSCEEH---HHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHcCCCCH---HHHHHHHHHcCCCCCCcChHHHHHHHHHHCCCeEEEee
Confidence 556666776433233 3333333 5899999999999999999998754
No 209
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=83.20 E-value=0.58 Score=33.05 Aligned_cols=45 Identities=18% Similarity=0.141 Sum_probs=36.0
Q ss_pred CcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCcccc
Q psy7778 45 KGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLT 89 (117)
Q Consensus 45 ~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYt 89 (117)
+=|---.|-.+.++.-+.-.++|+.|+++|+|+.|..=+.-.=||
T Consensus 59 KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYT 103 (108)
T 3iz6_V 59 KQITPSVLSERLRINGSLARQAIKDLESRGAIRVVSVHSSQLIYT 103 (108)
T ss_dssp SSEEEHHHHHHHHTCCHHHHHHHHHHHHHHTSCEECCCTTSCCEE
T ss_pred eEEeHHHHHhhhcccHHHHHHHHHHHHHCCCEEEEecCCCEEEEe
Confidence 567777888999999999999999999999999994322333444
No 210
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=82.76 E-value=2.4 Score=28.23 Aligned_cols=44 Identities=18% Similarity=0.152 Sum_probs=37.3
Q ss_pred ccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhh
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLET 72 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~ 72 (117)
...||+.|+.|+.++. .|.-.++|-...|+...+|...++.+..
T Consensus 32 ~~~Lt~re~~Vl~l~~----~G~s~~EIA~~L~iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA----EGFLVTEIAKKLNRSIKTISSQKKSAMM 75 (99)
T ss_dssp SSSCCHHHHHHHHHHH----HTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5679999999998863 6899999999999999998877776644
No 211
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=82.56 E-value=1.7 Score=29.71 Aligned_cols=47 Identities=26% Similarity=0.314 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhcCCcccHHHHHhhc------CCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 32 EKVVYKIIEEAGNKGIWMRDIRFKS------NLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 32 E~lVY~~Ie~AGn~GIWtkdIk~kt------nL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
+.+|..++.+.-.-|- +|..+. ++.+.+|..+|+.||.+|||.+...
T Consensus 15 ~~~IL~lL~~~p~~Gy---ei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~ 67 (116)
T 3hhh_A 15 EGLVLAIIQRKETYGY---EITKILNDQGFTEIVEGTVYTILLRLEKNQWVIAEKK 67 (116)
T ss_dssp HHHHHHHHHHSCBCHH---HHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHhcCCCCHH---HHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEee
Confidence 5677777765433443 444443 6899999999999999999998753
No 212
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=82.15 E-value=1.5 Score=26.59 Aligned_cols=46 Identities=13% Similarity=0.266 Sum_probs=38.0
Q ss_pred ccccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhh
Q psy7778 23 EKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLET 72 (117)
Q Consensus 23 ~k~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~ 72 (117)
..+..||+.|+.|+.++ -.|.-.++|-...|++..++...++....
T Consensus 12 ~~l~~L~~~e~~vl~l~----~~g~s~~eIA~~l~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 12 ARLQTLSERERQVLSAV----VAGLPNKSIAYDLDISPRTVEVHRANVMA 57 (79)
T ss_dssp HHHHHHCHHHHHHHHHH----TTTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34667999999998885 37899999999999999998887776644
No 213
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=81.81 E-value=0.96 Score=30.49 Aligned_cols=48 Identities=8% Similarity=0.107 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhcCCcccHHHHHhhc------C--CCh-HHHHHHHHHHhhcCCeeeeccc
Q psy7778 32 EKVVYKIIEEAGNKGIWMRDIRFKS------N--LMP-TQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 32 E~lVY~~Ie~AGn~GIWtkdIk~kt------n--L~~-~~l~K~LK~LE~k~LIK~VKsV 82 (117)
+..|..++... ..---+|.... + +.+ .+|..+|+.||..|||.....-
T Consensus 15 ~~~IL~~L~~~---~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~ 71 (118)
T 2esh_A 15 ASTILLLVAEK---PSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDT 71 (118)
T ss_dssp HHHHHHHHHHS---CBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHHHHcC---CCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEEeec
Confidence 55666666542 23333444443 2 888 9999999999999999987643
No 214
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=81.55 E-value=0.67 Score=31.85 Aligned_cols=55 Identities=9% Similarity=0.097 Sum_probs=40.7
Q ss_pred HHHHHHHHhcCCccc--------HHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCccccc
Q psy7778 34 VVYKIIEEAGNKGIW--------MRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLTE 90 (117)
Q Consensus 34 lVY~~Ie~AGn~GIW--------tkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYtd 90 (117)
.||..|...=..|-| .++|-.+.|+..++|.++|+.|+..|+|....+ .|.|-.+
T Consensus 15 ~i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~~--~G~~V~~ 77 (126)
T 3ic7_A 15 QIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNKRG--IGFFVAS 77 (126)
T ss_dssp HHHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEETT--TEEEECT
T ss_pred HHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEcC--CccEEcc
Confidence 466666655444443 578999999999999999999999999988765 3444443
No 215
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=81.51 E-value=1.3 Score=30.25 Aligned_cols=47 Identities=28% Similarity=0.368 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCCcccHHHHHhhc------CCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 32 EKVVYKIIEEAGNKGIWMRDIRFKS------NLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 32 E~lVY~~Ie~AGn~GIWtkdIk~kt------nL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
+.+|..++...-.-| -+|.... ++.+.+|..+|+.||.+|||.+...
T Consensus 13 ~~~IL~lL~~~p~~G---yei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~ 65 (117)
T 4esf_A 13 EGCVLEIISRRETYG---YEITRHLNDLGFTEVVEGTVYTILVRLEKKKLVNIEKK 65 (117)
T ss_dssp HHHHHHHHHHSCBCH---HHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHcCCCCH---HHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEee
Confidence 456666666433233 2344433 7899999999999999999998754
No 216
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=80.98 E-value=5.1 Score=23.40 Aligned_cols=45 Identities=7% Similarity=0.053 Sum_probs=36.1
Q ss_pred ccccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHH
Q psy7778 23 EKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQL 70 (117)
Q Consensus 23 ~k~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~L 70 (117)
..+..||+.++.|+.+.. -.|.-.++|-...|++.+++.+.+...
T Consensus 11 ~~l~~L~~~~r~il~l~~---~~g~s~~eIA~~lgis~~tv~~~~~ra 55 (70)
T 2o8x_A 11 TMIADLTTDQREALLLTQ---LLGLSYADAAAVCGCPVGTIRSRVARA 55 (70)
T ss_dssp TTTTSSCHHHHHHHHHHH---TSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 457889999998887755 357889999999999999877666543
No 217
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=80.81 E-value=0.032 Score=44.95 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
+||..|-.||-.+-..|. .-..+|-..+++|++.+..+|+.|+.+|||....+
T Consensus 15 Gls~~ea~vY~~Ll~~g~--~t~~eia~~~gv~~~~Vy~~L~~L~~~GlV~~~~g 67 (342)
T 3qph_A 15 GFTKYEILTYWTLLVYGP--STAKEISTKSGIPYNRVYDTISSLKLRGFVTEIEG 67 (342)
T ss_dssp HHHHHTTSCSHHHHHHHH--HHHSCCSSSTTSSSCSCCHHHHHHHHHTSEEEECC
T ss_pred CCCHHHHHHHHHHHHcCC--CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcC
Confidence 467777788888876653 45589999999999999999999999999998754
No 218
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=80.55 E-value=3 Score=30.37 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=41.0
Q ss_pred HHHHHHHHhcCCccc--------HHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 34 VVYKIIEEAGNKGIW--------MRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 34 lVY~~Ie~AGn~GIW--------tkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
.||+.|.+.=-.|-| -++|-.+.|+.-+.|..+|+.|+..|||....+.
T Consensus 11 ~v~~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~~g~ 67 (239)
T 1hw1_A 11 FAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGK 67 (239)
T ss_dssp HHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTE
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEecCC
Confidence 577777766555544 5899999999999999999999999999988763
No 219
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=80.50 E-value=2.1 Score=29.60 Aligned_cols=27 Identities=11% Similarity=0.241 Sum_probs=24.3
Q ss_pred cCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 56 SNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 56 tnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
.++.+.+|..+|+.||.+|||.+....
T Consensus 48 ~~is~gtlY~~L~rLe~~GlI~~~~~~ 74 (123)
T 3ri2_A 48 IPIEANTLYPLMRRLESQGLLASEWDN 74 (123)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEecc
Confidence 589999999999999999999987654
No 220
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=80.48 E-value=2.3 Score=32.68 Aligned_cols=56 Identities=16% Similarity=0.064 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCCccc--------HHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCcccccC
Q psy7778 34 VVYKIIEEAGNKGIW--------MRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLTEG 91 (117)
Q Consensus 34 lVY~~Ie~AGn~GIW--------tkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYtdg 91 (117)
.||+.|.+.=..|.| -++|..+.|+..+++.++|..|+..|+|....+. |.|-...
T Consensus 33 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~--G~~V~~~ 96 (272)
T 3eet_A 33 RVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGRSGS--GTYVRER 96 (272)
T ss_dssp HHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCC----EEECCC
T ss_pred HHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCc--eEEEecC
Confidence 567777665555554 6899999999999999999999999999888764 4444433
No 221
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=80.43 E-value=3.9 Score=32.78 Aligned_cols=52 Identities=15% Similarity=0.150 Sum_probs=42.4
Q ss_pred CCHHHHHHHH-----HHHHhcCCcccHHHHHhhc--CCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 28 SDNEEKVVYK-----IIEEAGNKGIWMRDIRFKS--NLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 28 L~~eE~lVY~-----~Ie~AGn~GIWtkdIk~kt--nL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
+++-++.|++ +|+..+. +=+++|..+. +....+|.+-|..||..|+|+.+-+
T Consensus 15 l~eR~~~IL~~i~~~yl~~~~p--V~s~~La~~~~l~VS~aTIRrDL~~LE~~GlL~r~Hg 73 (338)
T 1stz_A 15 LNDRQRKVLYCIVREYIENKKP--VSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQPHT 73 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSC--BCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEECCSS
T ss_pred HHHHHHHHHHHHHHHHHHcCCC--ccHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEccC
Confidence 5666667888 6666565 5679999999 8899999999999999999987443
No 222
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=80.28 E-value=2.1 Score=32.22 Aligned_cols=57 Identities=9% Similarity=0.127 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCCcc--------cHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCcccccCc
Q psy7778 34 VVYKIIEEAGNKGI--------WMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLTEGT 92 (117)
Q Consensus 34 lVY~~Ie~AGn~GI--------WtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYtdg~ 92 (117)
.||+.|.+.=..|. -.++|-.+.|+..+++.++|+.|+..|+|....+. |.|-....
T Consensus 14 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~--G~~V~~~~ 78 (243)
T 2wv0_A 14 QIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGR--GTFVSKPK 78 (243)
T ss_dssp HHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECTTS--CEEECCCC
T ss_pred HHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEeCCC--eEEEeCCc
Confidence 56666655433333 35899999999999999999999999999877654 55555443
No 223
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=80.05 E-value=2.5 Score=31.59 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCCcc--------cHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 34 VVYKIIEEAGNKGI--------WMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 34 lVY~~Ie~AGn~GI--------WtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
.||+.|.+.=..|. --++|-.+.|+..+++.++|+.|+..|+|....+.
T Consensus 9 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~~g~ 65 (239)
T 3bwg_A 9 QIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQVRGS 65 (239)
T ss_dssp HHHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEETTT
T ss_pred HHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEeCCc
Confidence 35555554333333 46799999999999999999999999999887654
No 224
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=79.56 E-value=5.2 Score=28.55 Aligned_cols=48 Identities=13% Similarity=0.147 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCCcccHHHHHhhc--------CCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 32 EKVVYKIIEEAGNKGIWMRDIRFKS--------NLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 32 E~lVY~~Ie~AGn~GIWtkdIk~kt--------nL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
+..|..++.. | ..---+|++.. ++...+|..+|+.||..|||.+....
T Consensus 4 ~~~iL~lL~~-~--~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~~~ 59 (179)
T 1yg2_A 4 PHVILTVLST-R--DATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLEP 59 (179)
T ss_dssp HHHHHHHHHH-C--CBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECCC-
T ss_pred HHHHHHHHhc-C--CCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEeec
Confidence 3456666654 2 24444555555 79999999999999999999976543
No 225
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=79.35 E-value=1.2 Score=29.58 Aligned_cols=48 Identities=15% Similarity=0.307 Sum_probs=35.6
Q ss_pred HHHHHHHHHhcCCc--ccHHHHHh--------hcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 33 KVVYKIIEEAGNKG--IWMRDIRF--------KSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 33 ~lVY~~Ie~AGn~G--IWtkdIk~--------ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
.+||+-+++.|..| .-.-+|.. =.|||..++.|||+.||++|=-.-++
T Consensus 12 ~~Iy~Wv~~~G~~~sV~TlyEL~~Gd~t~~~ef~gmd~~~L~kaL~~L~k~gkA~i~~ 69 (79)
T 3htu_A 12 KLIYQWVSRSGQNNSVFTLYELTNGEDTEDEEFHGLDEATLLRALQALQQEHKAEIIT 69 (79)
T ss_dssp HHHHHHHHTTCCSCSEECHHHHHHSSTTTTSTTTTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHcCCCCceEEEeeeccCCCCCCCcccCCCHHHHHHHHHHHHHcCCEEEEe
Confidence 48999999988875 22334443 14799999999999999988655554
No 226
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=79.07 E-value=2.2 Score=30.63 Aligned_cols=55 Identities=13% Similarity=0.322 Sum_probs=41.1
Q ss_pred ccCCCHHHHHHHHHHHHh---cC---C-------cccHHHHHhhcCCCh-HHHHHHHHHHhhcCCeeee
Q psy7778 25 LKDSDNEEKVVYKIIEEA---GN---K-------GIWMRDIRFKSNLMP-TQLNKILKQLETKKIIKAV 79 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~A---Gn---~-------GIWtkdIk~ktnL~~-~~l~K~LK~LE~k~LIK~V 79 (117)
+...+.++|+.+-+++-+ |. . -+-..+|-.-.|+.. ..++|+|+.|+..|+|+.-
T Consensus 135 ~~~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~ 203 (238)
T 2bgc_A 135 FSINGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYK 203 (238)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHccCHHHHHHHHHHHHHHHhCCCCCCceEEEeccCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEec
Confidence 334556787776665533 21 1 456789999999999 6999999999999999753
No 227
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=79.01 E-value=0.4 Score=41.37 Aligned_cols=53 Identities=13% Similarity=0.146 Sum_probs=0.0
Q ss_pred ccCCCH--HHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeee
Q psy7778 25 LKDSDN--EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAV 79 (117)
Q Consensus 25 ~~~L~~--eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~V 79 (117)
+++.++ -+.+|+.++++-|. |-++||...+++...++.++|+.|+..|+|+.+
T Consensus 509 ~~~~~~~~~~~~I~~~l~~~g~--it~~di~~l~~ls~~qa~~~L~~Lv~~G~l~~~ 563 (583)
T 3lmm_A 509 YLSTDQAELTNAAMLWLSEVGD--LATSDLMAMCGVSRGTAKACVDGLVDEERVVAV 563 (583)
T ss_dssp ---------------------------------------------------------
T ss_pred cccCChhHHHHHHHHHHHHcCC--cCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEe
Confidence 344444 35689999998655 999999999999999999999999999998775
No 228
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=78.88 E-value=2.4 Score=30.77 Aligned_cols=45 Identities=24% Similarity=0.286 Sum_probs=38.3
Q ss_pred hcCCcccHHHHHhhcC--------------CChHHHHHHHHHHhhcCCeeeeccccCCccccc
Q psy7778 42 AGNKGIWMRDIRFKSN--------------LMPTQLNKILKQLETKKIIKAVKSVANIEYLTE 90 (117)
Q Consensus 42 AGn~GIWtkdIk~ktn--------------L~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYtd 90 (117)
.|.-|. ++|....| ...+++.++|..||..|||.... .+|.+-+.
T Consensus 65 ~g~~G~--~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~--~~G~~Vt~ 123 (150)
T 2v7f_A 65 DGPVGI--ERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVP--GKGRVITP 123 (150)
T ss_dssp HCSBCH--HHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEET--TTEEEECH
T ss_pred hCCCCH--HHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEeC--CCceEECC
Confidence 457777 99999999 99999999999999999998764 35777664
No 229
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=78.41 E-value=5.1 Score=27.90 Aligned_cols=48 Identities=10% Similarity=0.114 Sum_probs=41.5
Q ss_pred ccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcC---CChHHHHHHHHHHhh
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSN---LMPTQLNKILKQLET 72 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktn---L~~~~l~K~LK~LE~ 72 (117)
...||+-|+.|..++-+..++++-.++|-.+.+ +...++...++.|-.
T Consensus 143 ~~~Lt~rE~~vl~~l~~~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~ 193 (220)
T 1p2f_A 143 RIHLPKKEFEILLFLAENAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRK 193 (220)
T ss_dssp ECCCCHHHHHHHHHHHHTTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHH
T ss_pred EEecCHHHHHHHHHHHHCCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 356999999999999999899999999999999 998888777777644
No 230
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=78.40 E-value=4.4 Score=30.52 Aligned_cols=58 Identities=12% Similarity=0.078 Sum_probs=51.2
Q ss_pred ccccccCCCHHHHHHHHHHHHhcCCccc--HHHHHhhcCCChHHHHHHHHHHhhcCCeee
Q psy7778 21 TNEKLKDSDNEEKVVYKIIEEAGNKGIW--MRDIRFKSNLMPTQLNKILKQLETKKIIKA 78 (117)
Q Consensus 21 ~a~k~~~L~~eE~lVY~~Ie~AGn~GIW--tkdIk~ktnL~~~~l~K~LK~LE~k~LIK~ 78 (117)
.++.++.|++++.-|...||..-..--| +..|....+++...+.+.++.|.+.+++..
T Consensus 3 ~~~~~~~l~~~~~~~l~a~e~g~~~~~~v~~~~i~~~~~l~~~~~~~~l~~l~~~~l~~~ 62 (282)
T 1zar_A 3 IAELYGKMGKHSWRIMDAIFKNLWDYEYVPLQLISSHARIGEEKARNILKYLSDLRVVQN 62 (282)
T ss_dssp HHHHHHTCCHHHHHHHHHHHTTTTTCSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHhCCHhhhhhhHHHhhCCcCceecCHHHHHHHhCCChhhHHHHHHHHhhCCCccc
Confidence 3567889999999999999998777777 678899999999999999999999999765
No 231
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=78.13 E-value=5.2 Score=26.90 Aligned_cols=49 Identities=20% Similarity=0.278 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCCcccHH-HHHhhc----CCChHHHHHHHHHHhhcCCeeeec
Q psy7778 32 EKVVYKIIEEAGNKGIWMR-DIRFKS----NLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 32 E~lVY~~Ie~AGn~GIWtk-dIk~kt----nL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
+.+|..++.+.-.-|--.. .|...+ ++.+.+|..+|+.||.+|||.+..
T Consensus 14 ~~~IL~~L~~~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~~ 67 (116)
T 3f8b_A 14 NVILLNVLKQGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYW 67 (116)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEEe
Confidence 5677888876444453332 333322 799999999999999999999875
No 232
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=77.87 E-value=7.9 Score=27.80 Aligned_cols=58 Identities=9% Similarity=0.026 Sum_probs=44.7
Q ss_pred ccCCCHHHHHHHHHHHHhcCCcccHHHHHhhc-----CCChHHHHHHHHHHhhc------CCeeeeccc
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKS-----NLMPTQLNKILKQLETK------KIIKAVKSV 82 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~kt-----nL~~~~l~K~LK~LE~k------~LIK~VKsV 82 (117)
.-.||+-|+.|..++-...++++-.++|-.+. +...++|...++.|-.| .+|+.|.++
T Consensus 174 ~~~LT~rE~~iL~~l~~~~~~~~s~~~i~~~lw~~~~~~~~~tv~~~i~~lr~KL~~~~~~~I~tv~g~ 242 (250)
T 3r0j_A 174 PVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGEKRLLHTLRGV 242 (250)
T ss_dssp EECCCHHHHHHHHHHHHTTTCCBCHHHHHHHHTTTSCCSCTHHHHHHHHHHHHHHCCSSSCCEEEETTT
T ss_pred EEecCHHHHHHHHHHHHCCCceEcHHHHHHHHcCCCCCCCccCHHHHHHHHHHhhcCCCCCcEEEeccc
Confidence 34699999999999999999999999999886 66777776666665432 467766654
No 233
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=77.23 E-value=3.7 Score=29.97 Aligned_cols=56 Identities=7% Similarity=0.062 Sum_probs=40.8
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHh-----hcCCChHHHHH----HHHHHhhc---CCeeeecc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRF-----KSNLMPTQLNK----ILKQLETK---KIIKAVKS 81 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~-----ktnL~~~~l~K----~LK~LE~k---~LIK~VKs 81 (117)
..||+-|+.|..++-...+++.-.++|-. ..++...+|.. +.+.|... .+|+.|.+
T Consensus 181 ~~LT~rE~evL~ll~~g~~~~~s~~eIa~~l~~~~l~~s~~TV~~hi~~lr~KL~~~~~~~~I~tvrG 248 (249)
T 3q9s_A 181 LRLSPKEFDILALLIRQPGRVYSRQEIGQEIWQGRLPEGSNVVDVHMANLRAKLRDLDGYGLLRTVRG 248 (249)
T ss_dssp ECCCHHHHHHHHHHHHSTTCCCCHHHHHHHHHTTCSCTTCSHHHHHHHHHHHHHCCCSCCCSSCCC--
T ss_pred eecCHHHHHHHHHHHHCCCceEcHHHHHHHhcCCCCCCCccCHHHHHHHHHHHhhcCCCCCeEEeccC
Confidence 46999999999999998899999999998 46777666554 44555433 45666554
No 234
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=75.84 E-value=3.6 Score=29.78 Aligned_cols=49 Identities=27% Similarity=0.313 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCccc-------HHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 34 VVYKIIEEAGNKGIW-------MRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 34 lVY~~Ie~AGn~GIW-------tkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
.||..|.+.=-.|-| -++|-.+.|+..+.|..+|+.|+..|||....+.
T Consensus 16 ~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~~ 71 (218)
T 3sxy_A 16 KVYNLLKEMILNHELKLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVVPRV 71 (218)
T ss_dssp HHHHHHHHHHHTTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEETTT
T ss_pred HHHHHHHHHHHhCCCCCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCCC
Confidence 577777776555554 5899999999999999999999999999887653
No 235
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=75.57 E-value=6.8 Score=26.14 Aligned_cols=48 Identities=19% Similarity=0.367 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 32 EKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 32 E~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
+..|-.++..++..... .++...+|++...+...|..|...+-|-.+.
T Consensus 4 ~~~l~~~L~~~~~~~~~-~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~~ 51 (135)
T 2v9v_A 4 EKILAQIIQEHREGLDW-QEAATRASLSLEETRKLLQSMAAAGQVTLLR 51 (135)
T ss_dssp HHHHHHHHHHCSSCEEH-HHHHHHHTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHcCcCCCH-HHHHHHhCCCHHHHHHHHHHHHhCCcEEEEe
Confidence 34567778888776444 9999999999999999999998877766664
No 236
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=75.48 E-value=2.6 Score=31.06 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=44.2
Q ss_pred HHHHHHHHhcC-----Cc--c-cHHHHHhhcCCChHHHHHHHHHHhhcCCeee--eccccCCcccccCc
Q psy7778 34 VVYKIIEEAGN-----KG--I-WMRDIRFKSNLMPTQLNKILKQLETKKIIKA--VKSVANIEYLTEGT 92 (117)
Q Consensus 34 lVY~~Ie~AGn-----~G--I-WtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~--VKsV~gg~wYtdg~ 92 (117)
.||..|.+.=- -| + --++|-.+.|+..+.|..+|+.|+..|||.. ..+...|.+-..-.
T Consensus 8 ~v~~~L~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~~~~~~~~~G~~V~~~~ 76 (239)
T 2di3_A 8 SVMDWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPRSGTIITAAP 76 (239)
T ss_dssp HHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTSGGGCCEECCCC
T ss_pred HHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeecccCCCCCceeeCCc
Confidence 46666655332 33 2 3469999999999999999999999999998 77765677665433
No 237
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=74.91 E-value=6.2 Score=28.32 Aligned_cols=55 Identities=13% Similarity=0.058 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCC-eeeeccccCCccccc
Q psy7778 32 EKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKI-IKAVKSVANIEYLTE 90 (117)
Q Consensus 32 E~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~L-IK~VKsV~gg~wYtd 90 (117)
...|+.++.+.+ ..+-.++|-.+.|+...++.+-|+.|+..|+ |... .+|-++..
T Consensus 23 ~~~Il~~L~~~~-~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~~---~~Gy~l~~ 78 (187)
T 1j5y_A 23 LKSIVRILERSK-EPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVAT---PRGYVLAG 78 (187)
T ss_dssp HHHHHHHHHHCS-SCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEE---TTEEECCT
T ss_pred HHHHHHHHHHcC-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE---CCEEEECC
Confidence 345666776543 3599999999999999999999999999999 8662 35544443
No 238
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=74.80 E-value=3.7 Score=31.47 Aligned_cols=38 Identities=11% Similarity=0.168 Sum_probs=34.0
Q ss_pred CCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 44 NKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 44 n~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
+.+.-..+|..++|+|+++|..+|+.|...++|+..+.
T Consensus 176 ~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~~~~ 213 (232)
T 2qlz_A 176 NGRATVEELSDRLNLKEREVREKISEMARFVPVKIIND 213 (232)
T ss_dssp SSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEEETT
T ss_pred cCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEEecC
Confidence 46777899999999999999999999999999986653
No 239
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=74.74 E-value=5.5 Score=27.85 Aligned_cols=48 Identities=8% Similarity=-0.045 Sum_probs=40.2
Q ss_pred ccCCCHHHHHHHHHHHHhcCCcccHHHHHhhc-----CCChHHHHHHHHHHhh
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKS-----NLMPTQLNKILKQLET 72 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~kt-----nL~~~~l~K~LK~LE~ 72 (117)
...||+-|+.|..++-+..++++-.++|-.+. ++...+|...++.|-.
T Consensus 154 ~~~Lt~rE~~vL~~l~~~~~~~~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~~ 206 (230)
T 2oqr_A 154 TITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRS 206 (230)
T ss_dssp CCCCCHHHHHHHHHHHHTTTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHHH
T ss_pred eeecCHHHHHHHHHHHhCCCceEcHHHHHHHhcCCCCCCCCcCHHHHHHHHHH
Confidence 45699999999999999888999999999998 8888887766666643
No 240
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=73.66 E-value=5.4 Score=31.27 Aligned_cols=49 Identities=20% Similarity=0.321 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHhhcCC--ChH---HHHHHHHHHhhcCCeeee
Q psy7778 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNL--MPT---QLNKILKQLETKKIIKAV 79 (117)
Q Consensus 31 eE~lVY~~Ie~AGn~GIWtkdIk~ktnL--~~~---~l~K~LK~LE~k~LIK~V 79 (117)
-|.-|+++|.++|+..+-..+|-.++++ +.. .+.+.|+.|.+.|++.+.
T Consensus 41 ~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~ 94 (364)
T 3p9c_A 41 IELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCL 94 (364)
T ss_dssp HHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred HHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEe
Confidence 3555888998888667999999999998 665 899999999999999986
No 241
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=72.43 E-value=4.8 Score=27.19 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=35.3
Q ss_pred HHHHHHHHhcCCcccH-HHHHhh---cCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 34 VVYKIIEEAGNKGIWM-RDIRFK---SNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 34 lVY~~Ie~AGn~GIWt-kdIk~k---tnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
+|..++.+...-|--. +.|+.. .++...+|..+|+.||..|||.+....
T Consensus 26 ~IL~lL~~~~~~Gyei~~~l~~~~~~~~is~gtLY~~L~rLe~~GlI~~~~~~ 78 (115)
T 2dql_A 26 YILYVLLQGESYGTELIQQLETEHPTYRLSDTVLYSAIKFLEDNRAITGYWKK 78 (115)
T ss_dssp HHHHHHTTSCBCHHHHHHHHHHHCTTEECCHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHCCCEEEEeee
Confidence 3777776544445443 345443 359999999999999999999987543
No 242
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=72.14 E-value=4.7 Score=26.98 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHhc--CCc-ccHHHHHhhc--CCChHHHHHHHHHHhhcCCeeeec
Q psy7778 28 SDNEEKVVYKIIEEAG--NKG-IWMRDIRFKS--NLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 28 L~~eE~lVY~~Ie~AG--n~G-IWtkdIk~kt--nL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
|+.-...|..++-..+ -.| =-.++|..++ ++...+|..+|+.||.+|+|.+..
T Consensus 7 ~~~~~~~IL~lL~~~~~~~~g~~i~~ei~~~~~~~is~GtlYp~L~rLe~~GlI~~~~ 64 (99)
T 2co5_A 7 MRINYYIILKVLVINGSRLEKKRLRSEILKRFDIDISDGVLYPLIDSLIDDKILREEE 64 (99)
T ss_dssp CHHHHHHHHHHHHHTTTEEEGGGHHHHHHHHHCCBCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred hcccHHHHHHHHHhcCCCCcHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHCCCEEEee
Confidence 4445667777775432 122 2345666666 589999999999999999999875
No 243
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=71.79 E-value=4.3 Score=32.89 Aligned_cols=46 Identities=13% Similarity=0.174 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhh
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLET 72 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~ 72 (117)
..|..+..|.-+..+..+..+-..+|...|||+...|.++|.+|..
T Consensus 196 ~vs~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~sL~~ 241 (382)
T 3dpl_C 196 EVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVA 241 (382)
T ss_dssp EEEHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHHC
T ss_pred EEcHHHHHHHHHhccCCCCcCcHHHHHHHHCcCHHHHHHHHHHHhc
Confidence 3567788777666655556777899999999999999999999964
No 244
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=70.70 E-value=6.5 Score=29.07 Aligned_cols=46 Identities=11% Similarity=-0.013 Sum_probs=40.2
Q ss_pred cccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhc
Q psy7778 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK 73 (117)
Q Consensus 24 k~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k 73 (117)
....||+.|+.|+.++. .|.-.++|-...|+...+|...++.+-.|
T Consensus 172 ~~~~Lt~re~~vl~~~~----~G~s~~eIa~~l~is~~tV~~~~~~~~~k 217 (237)
T 3szt_A 172 SNVRLTARETEMLKWTA----VGKTYGEIGLILSIDQRTVKFHIVNAMRK 217 (237)
T ss_dssp GGCCCCHHHHHHHHHHH----TTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH----cCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34679999999999972 78999999999999999999999888654
No 245
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=70.24 E-value=9 Score=26.54 Aligned_cols=47 Identities=13% Similarity=0.117 Sum_probs=38.3
Q ss_pred ccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcC-----CChHHHHHHHHHHh
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSN-----LMPTQLNKILKQLE 71 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktn-----L~~~~l~K~LK~LE 71 (117)
...||+-|+.|..++-...++.+..++|-.+.+ +...++...++.|-
T Consensus 149 ~~~Lt~rE~~vL~~l~~~~~~~~s~~eIa~~l~~~~~~~s~~tv~~hi~~l~ 200 (225)
T 1kgs_A 149 EIDLTKKEYQILEYLVMNKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLR 200 (225)
T ss_dssp EECCCHHHHHHHHHHHHTTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHH
T ss_pred EEecCHHHHHHHHHHHhCCCcccCHHHHHHHhcCCCCCCCcchHHHHHHHHH
Confidence 346999999999999888888899999999987 77777666655553
No 246
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=69.80 E-value=10 Score=26.91 Aligned_cols=57 Identities=11% Similarity=0.011 Sum_probs=43.1
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhc-----CCChHHHHHHHHHHhhc--------CCeeeeccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKS-----NLMPTQLNKILKQLETK--------KIIKAVKSV 82 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~kt-----nL~~~~l~K~LK~LE~k--------~LIK~VKsV 82 (117)
..||+-|+.|..++-+..+++.-.++|-.+. ++...+|...++.|-.| .+|+.|.++
T Consensus 152 ~~LT~rE~~vL~~l~~~~~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL~~~~~~~~~i~~~~g~ 221 (238)
T 2gwr_A 152 ISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVEKDPENPTVVLTVRGV 221 (238)
T ss_dssp ECCCHHHHHHHHHHHHSTTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHCSSTTSCSSEEEETTT
T ss_pred cccCHHHHHHHHHHHHCCCceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhccCCCCCCeEEEeCCe
Confidence 4699999999999998888899999999998 88888866666555332 256665554
No 247
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=69.74 E-value=8.4 Score=25.70 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=38.7
Q ss_pred ccccCCCHHHHHHHHHHHH-hcCCcccHHHHHhhcCCChHHH----HHHHHHHh
Q psy7778 23 EKLKDSDNEEKVVYKIIEE-AGNKGIWMRDIRFKSNLMPTQL----NKILKQLE 71 (117)
Q Consensus 23 ~k~~~L~~eE~lVY~~Ie~-AGn~GIWtkdIk~ktnL~~~~l----~K~LK~LE 71 (117)
..+..||+.|+.|+.+-.- .|..|.-.++|-..+|++..+| .++++.|.
T Consensus 15 ~aL~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR 68 (99)
T 3t72_q 15 DVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLR 68 (99)
T ss_pred HHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 3577899999999988663 3568999999999999999875 45556563
No 248
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=68.94 E-value=19 Score=27.81 Aligned_cols=59 Identities=5% Similarity=0.066 Sum_probs=48.3
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec--cccCCcccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK--SVANIEYLT 89 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK--sV~gg~wYt 89 (117)
..||.-...++.+|.-- ..|-..+|....|+.. +++++.|..+|||+++. ...|..+|.
T Consensus 96 ~~Ls~aaLEtLaiIAy~--QPITR~eI~~irGv~~---~~~v~~Lle~gLI~e~Gr~~~~Gp~ly~ 156 (219)
T 2z99_A 96 TKLTRAALETLAVVAYR--QPVTRARVSAVRGVNV---DAVMRTLLARGLITEVGTDADTGAVTFA 156 (219)
T ss_dssp CCCCHHHHHHHHHHHHH--CSEEHHHHHHHHTSCC---HHHHHHHHHTTSEEEEEECTTTCCEEEE
T ss_pred CccCHHHHHHHHHHHHc--CCcCHHHHHHHHCCCH---HHHHHHHHHCCCEEEccccCCCCCeEEE
Confidence 56888888899999775 6899999999999986 78999999999999984 223445553
No 249
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=68.76 E-value=3.8 Score=27.87 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcCCcccHH-HHHhhc--CCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 32 EKVVYKIIEEAGNKGIWMR-DIRFKS--NLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 32 E~lVY~~Ie~AGn~GIWtk-dIk~kt--nL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
+..|..++.+...-|--.. .|...+ .+++.+|..+|+.||..|||.+...
T Consensus 16 ~~~IL~lL~~~p~~gyel~~~l~~~~~~~i~~gtly~~L~~Le~~GlI~~~~~ 68 (117)
T 3elk_A 16 TLYILKELVKRPMHGYELQKSMFETTGQALPQGSIYILLKTMKERGFVISESS 68 (117)
T ss_dssp HHHHHHHHHHSCEEHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHTSEEEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEee
Confidence 4566677765333343322 233332 2888999999999999999998764
No 250
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=68.76 E-value=5.4 Score=30.02 Aligned_cols=52 Identities=12% Similarity=0.019 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCccc
Q psy7778 34 VVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYL 88 (117)
Q Consensus 34 lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wY 88 (117)
.|+.++. .| ..-+-.|-+.+||...++.-+|+.||..|+|++|+-=+.--|-
T Consensus 15 ~ILE~Lk-~G--~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~~Vk~GK~ayw~ 66 (165)
T 2vxz_A 15 DILALLA-DG--CKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAFGNVALVC 66 (165)
T ss_dssp HHHHHHT-TC--CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEETTEEEEE
T ss_pred HHHHHHH-hC--CccHHHHHHHhCCcHHHHHHHHHHHHhcCceEEEEEccEEEEE
Confidence 5667776 44 4567889999999999999999999999999999976655553
No 251
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=68.47 E-value=5.5 Score=29.66 Aligned_cols=54 Identities=13% Similarity=0.209 Sum_probs=43.0
Q ss_pred HHHHHHHHhcCCc-------ccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCcccc
Q psy7778 34 VVYKIIEEAGNKG-------IWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLT 89 (117)
Q Consensus 34 lVY~~Ie~AGn~G-------IWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYt 89 (117)
.||..|...=-.| +-.++|-.+.|+..+.|..+|+.|+..|||...++ +|.+-+
T Consensus 30 ~v~~~L~~~I~~g~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~~~--~G~~V~ 90 (237)
T 3c7j_A 30 VIEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRVETH--KGAVVA 90 (237)
T ss_dssp HHHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETT--TEEEEC
T ss_pred HHHHHHHHHHHhCCCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC--CceEEe
Confidence 4888887654444 45689999999999999999999999999988764 455544
No 252
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=68.32 E-value=4 Score=28.78 Aligned_cols=56 Identities=20% Similarity=0.190 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHhcCCcccH-HHHHhh---cCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWM-RDIRFK---SNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWt-kdIk~k---tnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
+++..+.+|..++.+...-|--. +.|... .++...+|..+|+.||.+|||.+....
T Consensus 31 ~~~~~~~~IL~lL~~~~~~Gyei~k~l~~~~~~~~is~gtLYp~L~rLe~~GlI~~~~~~ 90 (138)
T 2e1n_A 31 SKELAVCYVLAVLRHEDSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKK 90 (138)
T ss_dssp CHHHHHHHHHHHHTTSCEEHHHHHHHHHHHSTTEECCHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred cchHHHHHHHHHHHhCCCcHHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeec
Confidence 34456667888886644345443 345543 369999999999999999999987543
No 253
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=67.96 E-value=6.4 Score=28.53 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCCccc-------HHHHHhhcCCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 34 VVYKIIEEAGNKGIW-------MRDIRFKSNLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 34 lVY~~Ie~AGn~GIW-------tkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
.||..|.+.=-.|-| -++|-.+.|+..+.|..+|+.|+..|||....+
T Consensus 20 ~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~~~ 74 (222)
T 3ihu_A 20 TVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQRH 74 (222)
T ss_dssp HHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECST
T ss_pred HHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 577777765333333 588999999999999999999999999998765
No 254
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=67.39 E-value=6.5 Score=26.44 Aligned_cols=48 Identities=10% Similarity=0.019 Sum_probs=42.0
Q ss_pred cccCCCHHHHHHHHHHHHhcC--CcccHHHHHhhcCCChHHHHHHHHHHh
Q psy7778 24 KLKDSDNEEKVVYKIIEEAGN--KGIWMRDIRFKSNLMPTQLNKILKQLE 71 (117)
Q Consensus 24 k~~~L~~eE~lVY~~Ie~AGn--~GIWtkdIk~ktnL~~~~l~K~LK~LE 71 (117)
.+.+||+-|+.|.+.|-+-.. ..+-+++|-.+++..+++|.|-.|.|-
T Consensus 15 ~~~~ls~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kklG 64 (111)
T 2o3f_A 15 MXHXLPPSERKLADYILAHPHXAIESTVNEISALANSSDAAVIRLCXSLG 64 (111)
T ss_dssp HGGGSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTT
T ss_pred HhccCCHHHHHHHHHHHHChHHHHhcCHHHHHHHHCCCHHHHHHHHHHcC
Confidence 567899999999999987655 367889999999999999999999883
No 255
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=66.72 E-value=10 Score=26.64 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=38.6
Q ss_pred ccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhc
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK 73 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k 73 (117)
...||+-|+.|..++-. |.-.++|-.+.++...+|...++.|-.|
T Consensus 157 ~~~Lt~rE~~vL~~l~~----g~s~~~Ia~~l~~s~~Tv~~~i~~l~~K 201 (225)
T 3klo_A 157 YAKLTKREQQIIKLLGS----GASNIEIADKLFVSENTVKTHLHNVFKK 201 (225)
T ss_dssp HHTSCHHHHHHHHHHTT----TCCHHHHHHHTTCCHHHHHHHHHHHTTT
T ss_pred cccCCHHHHHHHHHHHc----CCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 45699999988888753 7889999999999999999999998665
No 256
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=66.55 E-value=1.5 Score=33.13 Aligned_cols=55 Identities=13% Similarity=0.154 Sum_probs=6.0
Q ss_pred HHHHHHHHhcCCccc--------HHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCccccc
Q psy7778 34 VVYKIIEEAGNKGIW--------MRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLTE 90 (117)
Q Consensus 34 lVY~~Ie~AGn~GIW--------tkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYtd 90 (117)
.||+.|.+.=..|.| -++|-.+.|+..+++.++|+.|+..|+|....+. |.|-..
T Consensus 20 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~g~--G~~V~~ 82 (247)
T 2ra5_A 20 QLSQQLEAAIEHGALTPGSLLGNEIELAARLGLSRPTVRQAIQSLVDKGLLVRRRGV--GTQVVH 82 (247)
T ss_dssp ------------------------------------------------CEEEEEC----------
T ss_pred HHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCc--eeEEec
Confidence 566666665555555 4688999999999999999999999999887654 444443
No 257
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=66.06 E-value=6.4 Score=30.61 Aligned_cols=45 Identities=22% Similarity=0.461 Sum_probs=36.3
Q ss_pred HHHHHHHhcCCc--ccHHHHHhhcCC------ChHHHHHHHHHHhhcCCeeee
Q psy7778 35 VYKIIEEAGNKG--IWMRDIRFKSNL------MPTQLNKILKQLETKKIIKAV 79 (117)
Q Consensus 35 VY~~Ie~AGn~G--IWtkdIk~ktnL------~~~~l~K~LK~LE~k~LIK~V 79 (117)
|+++|..+|..| +-..+|-.++++ ++..+.+.|+.|.+.|++.+.
T Consensus 49 if~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 101 (372)
T 1fp1_D 49 LFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTST 101 (372)
T ss_dssp HHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEec
Confidence 445565544223 899999999999 678999999999999999886
No 258
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=65.88 E-value=17 Score=20.93 Aligned_cols=49 Identities=12% Similarity=0.103 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCcccHHHHHhhc-----CCChHHHHHHHHHHhhcCCeeeeccccCCccc
Q psy7778 34 VVYKIIEEAGNKGIWMRDIRFKS-----NLMPTQLNKILKQLETKKIIKAVKSVANIEYL 88 (117)
Q Consensus 34 lVY~~Ie~AGn~GIWtkdIk~kt-----nL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wY 88 (117)
.+..++.. +..+-..+|-... ++..++|.+.|+.| ++| .+..-.+..+|
T Consensus 9 ~i~~ll~~--~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l---g~v-~~~~~~~~~~Y 62 (64)
T 2p5k_A 9 KIREIITS--NEIETQDELVDMLKQDGYKVTQATVSRDIKEL---HLV-KVPTNNGSYKY 62 (64)
T ss_dssp HHHHHHHH--SCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH---TCE-EEEETTTEEEE
T ss_pred HHHHHHHc--CCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc---CCE-EEecCCCceee
Confidence 34556644 4568889999999 99999999999944 678 66654444444
No 259
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=65.52 E-value=6.5 Score=29.59 Aligned_cols=42 Identities=10% Similarity=0.114 Sum_probs=34.9
Q ss_pred cHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCcccccCc
Q psy7778 48 WMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLTEGT 92 (117)
Q Consensus 48 WtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYtdg~ 92 (117)
--++|..+.|...+++.++|..|++.|+|.. .+. |.|-....
T Consensus 38 se~~La~~~~vSr~tvr~Al~~L~~~G~i~~-~g~--Gt~V~~~~ 79 (248)
T 3f8m_A 38 AEREIAEQFEVARETVRQALRELLIDGRVER-RGR--TTVVARPK 79 (248)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE-ETT--EEEECCCC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe-CCC--EEEEccCc
Confidence 4689999999999999999999999999988 654 55554443
No 260
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=64.27 E-value=9.7 Score=21.78 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhc
Q psy7778 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK 73 (117)
Q Consensus 31 eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k 73 (117)
.|+.|+.++ -.|.-.++|-...|++.+++...++.+..|
T Consensus 2 re~~vl~l~----~~g~s~~eIA~~l~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 2 RERQVLKLI----DEGYTNHGISEKLHISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHHHH----HTSCCSHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HcCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 356666664 358899999999999999988888776543
No 261
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=64.23 E-value=13 Score=27.03 Aligned_cols=45 Identities=11% Similarity=0.019 Sum_probs=38.1
Q ss_pred ccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhc
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK 73 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k 73 (117)
...||+.|+.|..++. +|.-.++|-...|+...+|...++.+-.|
T Consensus 173 ~~~Lt~~e~~vl~~~~----~g~s~~eIa~~l~is~~tV~~~~~~~~~k 217 (236)
T 2q0o_A 173 KQMLSPREMLCLVWAS----KGKTASVTANLTGINARTVQHYLDKARAK 217 (236)
T ss_dssp GGSCCHHHHHHHHHHH----TTCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4569999999998862 78999999999999999998888877543
No 262
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=64.02 E-value=9.5 Score=29.65 Aligned_cols=45 Identities=13% Similarity=0.168 Sum_probs=38.1
Q ss_pred HHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeee
Q psy7778 34 VVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAV 79 (117)
Q Consensus 34 lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~V 79 (117)
-|+++|.+++ .++-..+|-.++|++...+.+.|+.|.+.|++..-
T Consensus 39 gifd~L~~~~-~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~~ 83 (363)
T 3dp7_A 39 GIFQLLSGKR-EGYTLQEISGRTGLTRYAAQVLLEASLTIGTILLE 83 (363)
T ss_dssp THHHHHHTCT-TCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CHHHHHHhcC-CCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEec
Confidence 3666776643 47888999999999999999999999999999764
No 263
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=63.90 E-value=12 Score=28.43 Aligned_cols=46 Identities=11% Similarity=0.166 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 32 EKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 32 E~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
+.-|+++|. . ..+...+|-.++++++..+.+.|+.|.+.|++.+..
T Consensus 41 ~l~i~~~l~-~--~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~~ 86 (360)
T 1tw3_A 41 TLRLVDHIL-A--GARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDA 86 (360)
T ss_dssp HTTHHHHHH-T--TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HhCHHHHHh-C--CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEecC
Confidence 334566663 2 347889999999999999999999999999998853
No 264
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=63.89 E-value=15 Score=23.03 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=35.1
Q ss_pred ccccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHH
Q psy7778 23 EKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ 69 (117)
Q Consensus 23 ~k~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~ 69 (117)
..+..|++.++.|+.+.. -.|.-.++|-..+|++..+|.+.+..
T Consensus 33 ~~l~~L~~~~r~vl~l~~---~~g~s~~eIA~~lgis~~tV~~~l~r 76 (92)
T 3hug_A 33 DALAQLSAEHRAVIQRSY---YRGWSTAQIATDLGIAEGTVKSRLHY 76 (92)
T ss_dssp HHHHTSCHHHHHHHHHHH---TSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 357889999998887754 46789999999999999987655443
No 265
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=63.40 E-value=24 Score=23.34 Aligned_cols=56 Identities=13% Similarity=0.080 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCCcccHHHHHhhcC-CChHHHHHHHHHHhhcCCeeeeccccCCcccc
Q psy7778 32 EKVVYKIIEEAGNKGIWMRDIRFKSN-LMPTQLNKILKQLETKKIIKAVKSVANIEYLT 89 (117)
Q Consensus 32 E~lVY~~Ie~AGn~GIWtkdIk~ktn-L~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYt 89 (117)
|..|+.+++.. .+||-..+|...+. |+..+.-.+|-.|-+.+-|.-.|+= ++.+|.
T Consensus 16 e~~IL~l~~~~-P~GItd~~L~~~~p~~~~~~r~~aIN~LL~~gkiel~K~~-~~liYr 72 (81)
T 2dk8_A 16 ENRIIELCHQF-PHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSN-TGLLYR 72 (81)
T ss_dssp HHHHHHHHHHC-SSCEEHHHHHHHCTTSCHHHHHHHHHHHHHHTSEEEEECS-SSEEEE
T ss_pred HHHHHHHHHhC-CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHcCCeEEEecC-CeEEEE
Confidence 56799999777 69999999999976 6889999999999888888877663 666774
No 266
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=63.03 E-value=8.4 Score=28.57 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=39.6
Q ss_pred HHHHHHHHhcCCc-------ccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 34 VVYKIIEEAGNKG-------IWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 34 lVY~~Ie~AGn~G-------IWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
.||+.|.+.=-.| +--++|-.+.|+..+.|..+|+.|+..|||...++
T Consensus 32 ~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~~~ 86 (239)
T 2hs5_A 32 RVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHELN 86 (239)
T ss_dssp HHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHHcCCCCCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeCC
Confidence 5777777643333 45789999999999999999999999999998775
No 267
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=62.91 E-value=16 Score=25.02 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=36.2
Q ss_pred ccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhc
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK 73 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k 73 (117)
...||+-|+.|+.++. +|.-.++|-...++...++...++.+-.|
T Consensus 140 ~~~Lt~rE~~vl~~l~----~g~s~~~Ia~~l~is~~TV~~~~~~i~~K 184 (208)
T 1yio_A 140 FSSLTGREQQVLQLTI----RGLMNKQIAGELGIAEVTVKVHRHNIMQK 184 (208)
T ss_dssp HHTSCHHHHHHHHHHT----TTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHH----cCCcHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4569999998888883 57889999999999999987776666543
No 268
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=62.74 E-value=15 Score=26.79 Aligned_cols=44 Identities=18% Similarity=0.120 Sum_probs=37.4
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK 73 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k 73 (117)
..||+.|+.|..++ + .|.-.++|-...|+...+|...++..-.|
T Consensus 172 ~~Lt~~e~~vl~~~--~--~g~s~~eIa~~l~is~~tV~~~~~~~~~k 215 (234)
T 1l3l_A 172 AWLDPKEATYLRWI--A--VGKTMEEIADVEGVKYNSVRVKLREAMKR 215 (234)
T ss_dssp CCCCHHHHHHHHHH--T--TTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH--H--cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 46999999998886 2 79999999999999999998888776543
No 269
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=62.71 E-value=12 Score=28.22 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeee
Q psy7778 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAV 79 (117)
Q Consensus 31 eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~V 79 (117)
-|.-|+++|.+ .++-..+|-.+++++...+.+.|+.|.+.|++.+.
T Consensus 26 ~~lglf~~l~~---g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~ 71 (332)
T 3i53_A 26 ATLRVADHIAA---GHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRD 71 (332)
T ss_dssp HHHTHHHHHHT---TCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHcChHHHHhc---CCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEec
Confidence 35567888853 37899999999999999999999999999999886
No 270
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=62.44 E-value=7.7 Score=31.13 Aligned_cols=43 Identities=14% Similarity=0.080 Sum_probs=33.9
Q ss_pred cccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCcccc
Q psy7778 46 GIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLT 89 (117)
Q Consensus 46 GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYt 89 (117)
-+-..++...+++..+++++.|+.|+..|+|+++++=.+ .+|.
T Consensus 311 ~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~~~~gR~-~~y~ 353 (373)
T 2qc0_A 311 YCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQSGKE-KLFV 353 (373)
T ss_dssp EEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC--CCS-CEEE
T ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEEecCCCc-eEEe
Confidence 456677889999999999999999999999999965333 4554
No 271
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=62.18 E-value=14 Score=25.49 Aligned_cols=45 Identities=16% Similarity=0.264 Sum_probs=37.6
Q ss_pred ccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhc
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK 73 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k 73 (117)
...||+-|+.|..++.+ |.-.++|-.+.++...+|...++.|-.|
T Consensus 152 ~~~Lt~rE~~vl~~l~~----g~s~~~Ia~~l~is~~TV~~hi~~i~~K 196 (215)
T 1a04_A 152 VNQLTPRERDILKLIAQ----GLPNKMIARRLDITESTVKVHVKHMLKK 196 (215)
T ss_dssp GGGSCHHHHHHHHHHHT----TCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHc----CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45699999999998864 5678999999999999998888887654
No 272
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=61.91 E-value=15 Score=27.28 Aligned_cols=43 Identities=19% Similarity=0.226 Sum_probs=35.2
Q ss_pred ccccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHH
Q psy7778 23 EKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ 69 (117)
Q Consensus 23 ~k~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~ 69 (117)
..+..||+.|+.|+.+. . +|.-.++|-..+|++.++|...+..
T Consensus 193 ~~~~~L~~~erevl~L~--~--~G~s~~EIA~~L~iS~~TVk~~l~r 235 (258)
T 3clo_A 193 EHRNILSEREKEILRCI--R--KGLSSKEIAATLYISVNTVNRHRQN 235 (258)
T ss_dssp HHTTSSCHHHHHHHHHH--H--TTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHccCCHHHHHHHHHH--H--cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34678999999999885 3 8999999999999999986554433
No 273
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=61.89 E-value=8.8 Score=27.43 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCcccH-HHHHhh---cCCChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 34 VVYKIIEEAGNKGIWM-RDIRFK---SNLMPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 34 lVY~~Ie~AGn~GIWt-kdIk~k---tnL~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
+|..++.+...-|--. +.|+.. .++...+|..+|+.||..|||.+....
T Consensus 48 ~IL~lL~~~p~~GYeI~k~l~~~~~~~~is~gtLYp~L~rLE~~GlI~~~~~~ 100 (148)
T 2zfw_A 48 YVLAVLRHEDSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKK 100 (148)
T ss_dssp HHHHHHTTCCEEHHHHHHHHHHHCTTEECCSHHHHHHHHHHHHTSSEEEECCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHCCCEEEEeec
Confidence 4777776533344433 345443 359999999999999999999987543
No 274
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=61.80 E-value=16 Score=26.19 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=36.7
Q ss_pred ccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhc---CCeee
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK---KIIKA 78 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k---~LIK~ 78 (117)
+..|+-.+..++..+.+.|+ + ..=-.+.++.|+.|++.||.||.. .|+..
T Consensus 7 ~~~m~l~~L~~f~~v~~~gs--~--s~AA~~L~isq~avS~~I~~LE~~lg~~Lf~R 59 (310)
T 2esn_A 7 LRRLDLNLLLVFDALYRHRN--V--GTAASELAISASAFSHALGRLRQGLDDELFLR 59 (310)
T ss_dssp TTTSCTTHHHHHHHHHHHSS--H--HHHHHHHTCCHHHHHHHHHHHHHHHTSCCEEE
T ss_pred hhhcCHHHHHHHHHHHHcCC--H--HHHHHHhCCChHHHHHHHHHHHHhhCCcceee
Confidence 44566677777777777775 2 223678999999999999999984 55543
No 275
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=61.67 E-value=37 Score=25.69 Aligned_cols=57 Identities=25% Similarity=0.182 Sum_probs=41.1
Q ss_pred cccCCCHHHHHHHHHHHHh---cCCcccHHH-------HH-hhcC---CChHHHHHHHHHHhhcCCeeeec
Q psy7778 24 KLKDSDNEEKVVYKIIEEA---GNKGIWMRD-------IR-FKSN---LMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 24 k~~~L~~eE~lVY~~Ie~A---Gn~GIWtkd-------Ik-~ktn---L~~~~l~K~LK~LE~k~LIK~VK 80 (117)
.+..|++.++.++..|... |+..+-..+ +. ...+ +....+...|..|+..+||....
T Consensus 302 ~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 302 ELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp SSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeec
Confidence 4678999999888877653 333332332 44 5555 55688999999999999998764
No 276
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=61.56 E-value=18 Score=25.28 Aligned_cols=41 Identities=10% Similarity=0.140 Sum_probs=34.3
Q ss_pred cccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHH
Q psy7778 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKIL 67 (117)
Q Consensus 24 k~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~L 67 (117)
.+..||+.|+.|+.+.. -.|.-.++|-..+|++...|.+.+
T Consensus 184 ~l~~L~~~~r~vl~l~~---~~g~s~~EIA~~lgis~~~V~~~~ 224 (239)
T 1rp3_A 184 AVSKLPEREKLVIQLIF---YEELPAKEVAKILETSVSRVSQLK 224 (239)
T ss_dssp HHTTSCHHHHHHHHHHH---TSCCCHHHHHHHTTSCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH---hcCCCHHHHHHHhCCCHHHHHHHH
Confidence 57889999998887765 468999999999999999876554
No 277
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=61.32 E-value=20 Score=25.39 Aligned_cols=39 Identities=15% Similarity=0.297 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhc
Q psy7778 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK 73 (117)
Q Consensus 31 eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k 73 (117)
.+..++..|-+.|+ + ..=-.+.|+.|+.|++.|+.||..
T Consensus 4 ~~l~~f~~v~~~gs--~--s~AA~~L~isq~avS~~i~~LE~~ 42 (294)
T 1ixc_A 4 RQLKYFIAVAEAGN--M--AAAAKRLHVSQPPITRQMQALEAD 42 (294)
T ss_dssp HHHHHHHHHHHHSS--H--HHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC--H--HHHHHHhCCCcchHHHHHHHHHHH
Confidence 44555666666664 2 223678999999999999999984
No 278
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=60.46 E-value=17 Score=27.91 Aligned_cols=47 Identities=15% Similarity=0.253 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhcCCcccHHHHHhhcCCC---hHHHHHHHHHHhhcCCeeee
Q psy7778 32 EKVVYKIIEEAGNKGIWMRDIRFKSNLM---PTQLNKILKQLETKKIIKAV 79 (117)
Q Consensus 32 E~lVY~~Ie~AGn~GIWtkdIk~ktnL~---~~~l~K~LK~LE~k~LIK~V 79 (117)
+.-|+.+|..+| ..+-..+|..+++++ +..+.+.|+.|.+.|++.+.
T Consensus 38 ~lgif~~L~~~~-~~~t~~ela~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 87 (352)
T 1fp2_A 38 EMNIPNIIQNHG-KPISLSNLVSILQVPSSKIGNVRRLMRYLAHNGFFEII 87 (352)
T ss_dssp HTTHHHHHHHHT-SCEEHHHHHHHHTCCGGGHHHHHHHHHHHHHTTSEEEE
T ss_pred HCChhhhhhhcC-CCccHHHHHHHhCcCCCChHHHHHHHHHHHhCCeEEEe
Confidence 344677777654 368889999999995 77899999999999999886
No 279
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=60.43 E-value=11 Score=28.19 Aligned_cols=44 Identities=11% Similarity=0.036 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeee
Q psy7778 32 EKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKA 78 (117)
Q Consensus 32 E~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~ 78 (117)
|.-|+++|.+ ..+-..+|-.++++++..+.+.|+.|.+.|++..
T Consensus 28 ~l~i~~~l~~---~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~ 71 (335)
T 2r3s_A 28 ELNVFTAISQ---GIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTK 71 (335)
T ss_dssp HTTHHHHHTT---SEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HcChHHHHhc---CCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEe
Confidence 3345666653 4578899999999999999999999999999975
No 280
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=60.36 E-value=14 Score=27.72 Aligned_cols=58 Identities=21% Similarity=0.133 Sum_probs=41.6
Q ss_pred cccCCCHHHHHHHHHHHHhc--CC--cccHHHHHh-------h---cCCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 24 KLKDSDNEEKVVYKIIEEAG--NK--GIWMRDIRF-------K---SNLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 24 k~~~L~~eE~lVY~~Ie~AG--n~--GIWtkdIk~-------k---tnL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
.+..|+..++.++..|.... .. .+-..+|.. + ..+..+.+.++++.|+.+|+|.....
T Consensus 282 ~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 282 VLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEeee
Confidence 46789998887777666533 12 455555533 2 34567999999999999999998764
No 281
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A
Probab=60.31 E-value=28 Score=22.75 Aligned_cols=59 Identities=12% Similarity=0.014 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHhcC-CcccHHHHHh----hcCC----C---hHHHHHHHHHHhhcCCeeeeccccCCcc
Q psy7778 28 SDNEEKVVYKIIEEAGN-KGIWMRDIRF----KSNL----M---PTQLNKILKQLETKKIIKAVKSVANIEY 87 (117)
Q Consensus 28 L~~eE~lVY~~Ie~AGn-~GIWtkdIk~----ktnL----~---~~~l~K~LK~LE~k~LIK~VKsV~gg~w 87 (117)
-++-..||...|..... .|-....|++ +... | ...|+++||.+..+|-+..+|+ ..|+|
T Consensus 7 hP~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~~~~~~~~~~~~lk~aLK~~v~~G~lvq~Kg-asGsf 77 (88)
T 1uss_A 7 SLTYKEMILKSMPQLNDGKGSSRIVLKKYVKDTFSSKLKTSSNFDYLFNSAIKKCVENGELVQPKG-PSGII 77 (88)
T ss_dssp SCCHHHHHHHHHHHSCCTTSBCHHHHHHHHHHHTTTTSCCSSTHHHHHHHHHHHHHHHSSEECSST-TSSCB
T ss_pred CCCHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCCcccchHhHHHHHHHHHHHHHHcCCEEeccC-CCCce
Confidence 44556688888888777 5887777764 2222 2 4569999999999999999998 55555
No 282
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=59.72 E-value=16 Score=27.59 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=38.7
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK 73 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k 73 (117)
..||+.|+.|+.++. +|.-.++|-...|+...+|+..++..-.|
T Consensus 196 ~~Lt~re~~vl~~~~----~G~s~~eIA~~l~is~~TV~~~~~~~~~k 239 (265)
T 3qp6_A 196 MPLSQREYDIFHWMS----RGKTNWEIATILNISERTVKFHVANVIRK 239 (265)
T ss_dssp CCCCHHHHHHHHHHH----TTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 479999999999982 69999999999999999999998887554
No 283
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=59.10 E-value=15 Score=27.60 Aligned_cols=46 Identities=9% Similarity=0.032 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 32 EKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 32 E~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
|.-|++.|.+ .++-..+|-.++++++..+.+.|+.|.+.|++.+..
T Consensus 30 ~lgi~~~l~~---~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~~ 75 (334)
T 2ip2_A 30 RLGLADLIES---GIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDT 75 (334)
T ss_dssp HTTHHHHHHT---TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HcCcHHHHhC---CCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceEecC
Confidence 3346666642 367888999999999999999999999999998763
No 284
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=59.09 E-value=13 Score=28.60 Aligned_cols=35 Identities=14% Similarity=0.242 Sum_probs=32.2
Q ss_pred CcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeee
Q psy7778 45 KGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAV 79 (117)
Q Consensus 45 ~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~V 79 (117)
.++-..+|-.++++++..+.+.|+.|.+.|++.+.
T Consensus 63 ~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~ 97 (359)
T 1x19_A 63 GPKDLATLAADTGSVPPRLEMLLETLRQMRVINLE 97 (359)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEee
Confidence 46778899999999999999999999999999875
No 285
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=59.09 E-value=14 Score=24.35 Aligned_cols=49 Identities=12% Similarity=0.335 Sum_probs=40.6
Q ss_pred CCCHH-HHHHHHHHHHhcCCcccHHHHHhhcCCChHH-HHHHHHHHhhcCCee
Q psy7778 27 DSDNE-EKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQ-LNKILKQLETKKIIK 77 (117)
Q Consensus 27 ~L~~e-E~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~-l~K~LK~LE~k~LIK 77 (117)
.|+.. |..||+..+++|..-. -.|-+..||-.+. ||..|=+|+.++++.
T Consensus 6 qls~~~ee~I~~fL~~~Gp~~A--L~IAK~LGlktAK~VNp~LY~m~~~~lL~ 56 (72)
T 3eyi_A 6 QFSQQREEDIYRFLKDNGPQRA--LVIAQALGMRTAKDVNRDLYRMKSRHLLD 56 (72)
T ss_dssp CCSSHHHHHHHHHHHHHCSEEH--HHHHHHTTCCSGGGTHHHHHHHHHTTSEE
T ss_pred hhhhhhHHHHHHHHHHcCCchH--HHHHHHhCcchhhhcCHHHHHHHHccCcC
Confidence 45553 7799999999998654 4678889988876 999999999999984
No 286
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=58.54 E-value=28 Score=25.51 Aligned_cols=48 Identities=17% Similarity=0.079 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHhhc-----CCChHHHHHHHHHHhhcCCeeee
Q psy7778 29 DNEEKVVYKIIEEAGNKGIWMRDIRFKS-----NLMPTQLNKILKQLETKKIIKAV 79 (117)
Q Consensus 29 ~~eE~lVY~~Ie~AGn~GIWtkdIk~kt-----nL~~~~l~K~LK~LE~k~LIK~V 79 (117)
++.++.|...+.. |. .-..+|...+ +++...+.+.|..|+..+||...
T Consensus 281 ~~~~~~~l~~la~-g~--~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 333 (350)
T 2qen_A 281 SPRYVDILRAIAL-GY--NRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE 333 (350)
T ss_dssp CHHHHHHHHHHHT-TC--CSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ChhHHHHHHHHHh-CC--CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec
Confidence 5777888877765 42 3346776655 89999999999999999999876
No 287
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=58.48 E-value=17 Score=24.85 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=31.2
Q ss_pred CCCHHHHHH----HHHHHHhcCCc-ccHHHHHhhcCCChHHHHHHHHHH
Q psy7778 27 DSDNEEKVV----YKIIEEAGNKG-IWMRDIRFKSNLMPTQLNKILKQL 70 (117)
Q Consensus 27 ~L~~eE~lV----Y~~Ie~AGn~G-IWtkdIk~ktnL~~~~l~K~LK~L 70 (117)
-||+.|+.+ |.+...- ..| .--++|..++|+..++|+|+=+.|
T Consensus 35 lLT~~Er~~l~~R~~l~~~L-~~ge~TQREIA~~lGiS~stISRi~r~L 82 (101)
T 1jhg_A 35 MLTPDEREALGTRVRIIEEL-LRGEMSQRELKNELGAGIATITRGSNSL 82 (101)
T ss_dssp HSCHHHHHHHHHHHHHHHHH-HHCCSCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHH-HcCCcCHHHHHHHHCCChhhhhHHHHHH
Confidence 488888744 3333222 345 999999999999999988885555
No 288
>1qb2_A SRP54, human signal recognition particle 54 KD protein; alpha-helix, helix-turn-helix, signaling protein; 2.10A {Homo sapiens} SCOP: a.36.1.1 PDB: 1ry1_W* 2go5_W
Probab=58.45 E-value=8.5 Score=26.68 Aligned_cols=51 Identities=12% Similarity=0.208 Sum_probs=38.9
Q ss_pred cccCCCHHHHHH---HHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhh-cCCee
Q psy7778 24 KLKDSDNEEKVV---YKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLET-KKIIK 77 (117)
Q Consensus 24 k~~~L~~eE~lV---Y~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~-k~LIK 77 (117)
-+.++|++|+.= -.+|.+++ ==.+-|-+-+|.+...|++.||+.++ ++.+|
T Consensus 53 II~SMT~~Er~~~~~P~ii~~~~---SR~~RIA~GSG~~v~eVn~LLkqf~~m~kmmk 107 (109)
T 1qb2_A 53 IMDSMNDQELDSTDGAKVFSKQP---GRIQRVARGSGVSTRDVQELLTQYTKFAQMVK 107 (109)
T ss_dssp HHTTSCHHHHHSTTTHHHHHHST---HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHcCCHHHHhcCCCccccccch---HHHHHHHccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 467899999886 78886433 23567778899999999999999976 55554
No 289
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=58.39 E-value=24 Score=22.19 Aligned_cols=48 Identities=25% Similarity=0.257 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCee
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIK 77 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK 77 (117)
.++.+++. .+|... ..|...++|-..+|++.++|.+.++.....+...
T Consensus 17 ~~s~~~r~--~i~~~~-~~g~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~ 64 (128)
T 1pdn_C 17 PLPNNIRL--KIVEMA-ADGIRPCVISRQLRVSHGCVSKILNRYQETGSIR 64 (128)
T ss_dssp CCCHHHHH--HHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHCCSS
T ss_pred cCCHHHHH--HHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHhhCCcc
Confidence 46776652 223333 2688899999999999999999999998766543
No 290
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=58.38 E-value=17 Score=28.30 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 32 EKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 32 E~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
|.-|+++|.++ ..++-..+|..+++++...+.+.|+.|.+-+++....
T Consensus 30 eLglfd~L~~~-~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~~ 77 (353)
T 4a6d_A 30 ELGVFDLLAEA-PGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVET 77 (353)
T ss_dssp HHTHHHHHHHS-SSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HcCHHHHHhcC-CCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEec
Confidence 55577888765 3578899999999999999999999999999997654
No 291
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=58.36 E-value=24 Score=27.48 Aligned_cols=44 Identities=7% Similarity=-0.016 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCee
Q psy7778 32 EKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIK 77 (117)
Q Consensus 32 E~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK 77 (117)
...|..++. .+.-+-..+|-.+.|+...++.|.|+.|+..|++.
T Consensus 7 ~~~Il~~L~--~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i 50 (321)
T 1bia_A 7 PLKLIALLA--NGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDV 50 (321)
T ss_dssp HHHHHHHHT--TSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHH--cCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcE
Confidence 445666663 45568999999999999999999999999999874
No 292
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=58.21 E-value=16 Score=27.84 Aligned_cols=45 Identities=9% Similarity=0.165 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeee
Q psy7778 32 EKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAV 79 (117)
Q Consensus 32 E~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~V 79 (117)
+.-|+++|. . ..+-..+|-.++++++..+.+.|+.|.+.|++.+.
T Consensus 38 ~l~i~~~l~-~--~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gll~~~ 82 (374)
T 1qzz_A 38 TLRLVDHLL-A--GADTLAGLADRTDTHPQALSRLVRHLTVVGVLEGG 82 (374)
T ss_dssp HTTHHHHHH-T--TCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEECC
T ss_pred HcChHHHHh-C--CCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCEEEe
Confidence 334566663 2 34778899999999999999999999999999874
No 293
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=58.21 E-value=27 Score=26.01 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=40.6
Q ss_pred cccCCCHHHHHHHHHHHHh--cCCcccHHHHHh-------hc---CCChHHHHHHHHHHhhcCCeeeec
Q psy7778 24 KLKDSDNEEKVVYKIIEEA--GNKGIWMRDIRF-------KS---NLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 24 k~~~L~~eE~lVY~~Ie~A--Gn~GIWtkdIk~-------kt---nL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
.+.+|++++++++..|-.. |+..+-.+++-. .. .+....+..++..|+..|+|....
T Consensus 284 ~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 284 VVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGLEHVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCeEEEe
Confidence 4678999888887766532 555565553322 22 456689999999999999999864
No 294
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=58.13 E-value=18 Score=25.51 Aligned_cols=45 Identities=16% Similarity=0.286 Sum_probs=37.5
Q ss_pred ccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhc
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK 73 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k 73 (117)
...||+-|+.|..++. +|.-.++|-.+.++...+|...++.|-.|
T Consensus 147 ~~~LT~rE~~vL~~l~----~g~s~~eIa~~l~is~~TV~~hi~~l~~K 191 (225)
T 3c3w_A 147 LSGLTDQERTLLGLLS----EGLTNKQIADRMFLAEKTVKNYVSRLLAK 191 (225)
T ss_dssp TTTSCHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH----CCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4579999999999985 45889999999999999888877777543
No 295
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=58.00 E-value=14 Score=27.93 Aligned_cols=56 Identities=18% Similarity=0.124 Sum_probs=39.5
Q ss_pred cccCCCHHHHHHHHHHHHhcCC-cccH---HHHHhhcC---CChHHHHHHHHHHhhcCCeeeec
Q psy7778 24 KLKDSDNEEKVVYKIIEEAGNK-GIWM---RDIRFKSN---LMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 24 k~~~L~~eE~lVY~~Ie~AGn~-GIWt---kdIk~ktn---L~~~~l~K~LK~LE~k~LIK~VK 80 (117)
.+.+|++.|+.++..+-. +.. |=+. ..+....| +....+..++..|+.+++|....
T Consensus 278 ~~~~l~~~~~~~l~al~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 278 AVKALPFHYKLALRSLIE-SEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp HHHSSCHHHHHHHHHHHT-CCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHcCCHHHHHHHHHHHH-hcccChHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 457899999988877765 333 3222 23333433 67799999999999999998754
No 296
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=57.69 E-value=24 Score=23.66 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=37.0
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCee
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIK 77 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK 77 (117)
+.++.+++. .++... ..|...++|-...|++.++|.+.++..+..|...
T Consensus 31 ~~~s~e~r~--~iv~~~-~~G~s~~~iA~~lgis~~TV~rw~~~~~~~G~~~ 79 (149)
T 1k78_A 31 RPLPDVVRQ--RIVELA-HQGVRPCDISRQLRVSHGCVSKILGRYYETGSIK 79 (149)
T ss_dssp SCCCHHHHH--HHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHSCCC
T ss_pred CCCCHHHHH--HHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCCC
Confidence 357777662 233333 3588899999999999999999999998777643
No 297
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=57.28 E-value=7.8 Score=31.98 Aligned_cols=84 Identities=17% Similarity=0.173 Sum_probs=58.8
Q ss_pred ccccccCCCHHHHHHHHHHHHhcCCcccH--HHHHhhcCCCh--HHHHHHHHHHhhcCCeeeecccc-CCcccccCcccc
Q psy7778 21 TNEKLKDSDNEEKVVYKIIEEAGNKGIWM--RDIRFKSNLMP--TQLNKILKQLETKKIIKAVKSVA-NIEYLTEGTVNA 95 (117)
Q Consensus 21 ~a~k~~~L~~eE~lVY~~Ie~AGn~GIWt--kdIk~ktnL~~--~~l~K~LK~LE~k~LIK~VKsV~-gg~wYtdg~~D~ 95 (117)
+++.++.|++++..|+..||..-..==|- ..|..-++|+. .-+.++|+.|...+||..+++.. -|-=.|-+.||.
T Consensus 5 ~~~~~r~l~~~d~rvL~ave~g~~~he~vp~~~i~~~~~l~~~~~~~~~~l~~l~~~~lv~~~~~~~y~gy~lt~~gyD~ 84 (397)
T 4gyi_A 5 DTRAMRHLTAEDWRVLTAVEMGSKNHEIVPTPLIEKIARLRGGSSGVHKSIATLAKAGLIARMKEAKYDGYRLTYGGLDY 84 (397)
T ss_dssp CCSGGGTCCHHHHHHHHHHHHHTTTCSSEEHHHHHHHHCSSSCCCSHHHHHHHHHHTTSEEEEECSSCEEEEECHHHHHH
T ss_pred CHHHHhhcCHHHHHHHHHHHhccCCcccccHHHHHHHhCCCCchHhHHHHHHhhhhcCceeeccCCCcceeeeccCchHH
Confidence 45678999999999999999543332232 56888899964 47999999999999998876654 222234455665
Q ss_pred ccchhhhhh
Q psy7778 96 MVLPSRKKR 104 (117)
Q Consensus 96 ~fI~~l~~~ 104 (117)
--+..|.+|
T Consensus 85 LAL~~L~~r 93 (397)
T 4gyi_A 85 LALHTHAAR 93 (397)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHC
Confidence 555555443
No 298
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=57.23 E-value=21 Score=27.36 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCCcccHHHHHhhcCCC---hHHHHHHHHHHhhcCCeeee
Q psy7778 32 EKVVYKIIEEAGNKGIWMRDIRFKSNLM---PTQLNKILKQLETKKIIKAV 79 (117)
Q Consensus 32 E~lVY~~Ie~AGn~GIWtkdIk~ktnL~---~~~l~K~LK~LE~k~LIK~V 79 (117)
|.-|+++|..+| ..+-..+|-.++++| +..+.+.|+.|.+.|++.+.
T Consensus 32 ~lgif~~L~~~~-~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~ 81 (358)
T 1zg3_A 32 ELGIADAIHNHG-KPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKT 81 (358)
T ss_dssp HHTHHHHHHHHT-SCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEE
T ss_pred HCChHhHHhhcC-CCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEe
Confidence 455777887753 368889999999994 78999999999999999886
No 299
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=57.18 E-value=17 Score=24.41 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=42.3
Q ss_pred ccccCCCHHHHHHHHHHHHhcC--CcccHHHHHhhcCCChHHHHHHHHHH
Q psy7778 23 EKLKDSDNEEKVVYKIIEEAGN--KGIWMRDIRFKSNLMPTQLNKILKQL 70 (117)
Q Consensus 23 ~k~~~L~~eE~lVY~~Ie~AGn--~GIWtkdIk~ktnL~~~~l~K~LK~L 70 (117)
..+.+||+-|+.|.+.|-+-.. .-.-+++|-.+++..+++|.|-.|.|
T Consensus 10 ~~~~~lt~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kkL 59 (107)
T 3iwf_A 10 NQYPYFTKNEKKIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSKKV 59 (107)
T ss_dssp HHGGGSCHHHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHhCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHh
Confidence 3567899999999999987765 46788999999999999999999998
No 300
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=56.77 E-value=31 Score=25.77 Aligned_cols=55 Identities=13% Similarity=0.102 Sum_probs=42.6
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHH-HHhhcCCeeeec
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK-QLETKKIIKAVK 80 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK-~LE~k~LIK~VK 80 (117)
.+++..|+.+...+-..+...+-..++....+++.+++.+.++ .|...++|....
T Consensus 259 ~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~ 314 (338)
T 3pfi_A 259 LGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTA 314 (338)
T ss_dssp TCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEET
T ss_pred cCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCC
Confidence 4566655544444444476777788999999999999999998 899999998764
No 301
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=56.56 E-value=11 Score=28.64 Aligned_cols=35 Identities=9% Similarity=0.096 Sum_probs=32.3
Q ss_pred cccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 46 GIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 46 GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
++-..+|-.++|++...+.+.|+.|.+.|++.+..
T Consensus 56 ~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~~ 90 (352)
T 3mcz_A 56 GRTPAEVAASFGMVEGKAAILLHALAALGLLTKEG 90 (352)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEecC
Confidence 77789999999999999999999999999999754
No 302
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=55.64 E-value=2.8 Score=29.31 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeee
Q psy7778 28 SDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKA 78 (117)
Q Consensus 28 L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~ 78 (117)
++.-+..|...+.. +.-+-.++|-.+.|+..+.+.++|+.|+..|+|..
T Consensus 11 ~d~l~~~Il~~l~~--~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 11 LDRIDRNILNELQK--DGRISNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp CCSHHHHHHHHHHH--CSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred hhHHHHHHHHHHHh--CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 45545566665443 33467889999999999999999999999999985
No 303
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=55.45 E-value=24 Score=22.12 Aligned_cols=44 Identities=11% Similarity=0.139 Sum_probs=32.0
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhh
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLET 72 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~ 72 (117)
+..|++.+. .+++.. ..|...++|-.++|++.++|.+.++..+.
T Consensus 21 ~~ys~e~k~--~~v~~~-~~g~s~~~iA~~~gIs~sTl~rW~k~~~~ 64 (87)
T 2elh_A 21 RSLTPRDKI--HAIQRI-HDGESKASVARDIGVPESTLRGWCKNEDK 64 (87)
T ss_dssp SSCCHHHHH--HHHHHH-HHTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHH--HHHHHH-HCCCCHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 456676542 233333 25678899999999999999999987754
No 304
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=55.30 E-value=37 Score=21.51 Aligned_cols=54 Identities=9% Similarity=-0.039 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHhcC-CcccHHHHHhh----c--CCC----hHHHHHHHHHHhhcCCeeeeccc
Q psy7778 29 DNEEKVVYKIIEEAGN-KGIWMRDIRFK----S--NLM----PTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 29 ~~eE~lVY~~Ie~AGn-~GIWtkdIk~k----t--nL~----~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
++-..||...|..... .|-....|++- . +++ ...++++||.+..+|-+..+|++
T Consensus 5 P~y~~MI~eAI~~lker~GsS~~AIkKyI~~~y~~~~~~~~~~~~l~~aLk~~v~~G~l~q~KGa 69 (78)
T 1uhm_A 5 KSYRELIIEGLTALKERKGSSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEAGDFEQPKGP 69 (78)
T ss_dssp CCHHHHHHHHHHHHCCSSCEEHHHHHHHHHTTSCTTTSSSTHHHHHHHHHHHHHHTTSEECCCTT
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHHHHcCCEEeccCC
Confidence 4455578888877766 68888887652 2 223 45699999999999988888863
No 305
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=55.28 E-value=14 Score=25.63 Aligned_cols=47 Identities=9% Similarity=-0.054 Sum_probs=36.6
Q ss_pred ccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcC-----CChHHHHHHHHHHh
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSN-----LMPTQLNKILKQLE 71 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktn-----L~~~~l~K~LK~LE 71 (117)
...||+-|+.|..++-+..++-+-.++|-.+.+ +...+|...++.|-
T Consensus 157 ~~~Lt~rE~~vL~~l~~g~~~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~ 208 (233)
T 1ys7_A 157 DVDLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLR 208 (233)
T ss_dssp ECCCCHHHHHHHHHHHHTTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHH
T ss_pred EeccCHHHHHHHHHHHhCCCCeEcHHHHHHHhcCcccCCCccCHHHHHHHHH
Confidence 456999999999999888888899999999887 77766665555553
No 306
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=54.23 E-value=37 Score=21.22 Aligned_cols=47 Identities=13% Similarity=0.095 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHhcCC-cccHHHHHhhcCCChHHHHHHHHHHhhcCC
Q psy7778 27 DSDNEEKVVYKIIEEAGNK-GIWMRDIRFKSNLMPTQLNKILKQLETKKI 75 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~-GIWtkdIk~ktnL~~~~l~K~LK~LE~k~L 75 (117)
..|++++. .+++..-+. |...++|-.+.|++.++|.+-++.....+.
T Consensus 5 ~ys~e~k~--~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~~~~~g~ 52 (97)
T 2jn6_A 5 TYSEEFKR--DAVALYENSDGASLQQIANDLGINRVTLKNWIIKYGSNHN 52 (97)
T ss_dssp CCCHHHHH--HHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHHCCCST
T ss_pred CCCHHHHH--HHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHHHhhcCc
Confidence 45666543 345554444 889999999999999999999999877554
No 307
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=53.43 E-value=36 Score=25.66 Aligned_cols=64 Identities=13% Similarity=0.163 Sum_probs=45.8
Q ss_pred CCCHHHHHH----HHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCcccccCcc
Q psy7778 27 DSDNEEKVV----YKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLTEGTV 93 (117)
Q Consensus 27 ~L~~eE~lV----Y~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYtdg~~ 93 (117)
.+++++..+ +.....+|=.--|.+||-...+++...+..+|+.|...|.|-.|. .+-||+-..+
T Consensus 134 ~~~~~~~~~~~~i~~~~~~~g~~pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv~l~---~~~~~~~~~~ 201 (258)
T 1lva_A 134 SFSETQKKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKIN---DEFYWHRQAL 201 (258)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESS---SSBEEEHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEEEec---CCeEEcHHHH
Confidence 466655443 333444554446999999999999999999999999999877754 4555554433
No 308
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=53.06 E-value=14 Score=29.98 Aligned_cols=54 Identities=13% Similarity=0.050 Sum_probs=38.8
Q ss_pred cccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCcccccCccccccchhhhhh
Q psy7778 46 GIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLTEGTVNAMVLPSRKKR 104 (117)
Q Consensus 46 GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYtdg~~D~~fI~~l~~~ 104 (117)
-+-.+++...+++..+++++.|+.|+..|+++++++=+ +.+|. ..++++.+.+.
T Consensus 311 ~~t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~~~~~gR-~~~y~----~~~~l~il~~~ 364 (373)
T 3eqx_A 311 YCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEVQSGK-EKLFV----HPKFVTLMTKD 364 (373)
T ss_dssp EEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC--CC-SCEEE----CHHHHHHHHSS
T ss_pred CccHHHHHHHhCcCHHHHHHHHHHHHHCCcEEEeCCCC-ceEee----hHHHHHHHhcc
Confidence 35668888899999999999999999999999987633 34442 34455555443
No 309
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=53.03 E-value=23 Score=25.01 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=39.0
Q ss_pred ccccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhc
Q psy7778 23 EKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK 73 (117)
Q Consensus 23 ~k~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k 73 (117)
..+..|++.+..+..++. .|.+.++|-..+|++..+|...++.+..|
T Consensus 194 ~~l~~L~~r~~~i~~~~~----~g~~~~eia~~l~~s~~tv~~~l~~i~~k 240 (258)
T 3p7n_A 194 EMLKTLSPRQLEVTTLVA----SGLRNKEVAARLGLSEKTVKMHRGLVMEK 240 (258)
T ss_dssp HHHTTSCHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 356789998888888775 48899999999999999998888877543
No 310
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=52.87 E-value=19 Score=26.39 Aligned_cols=49 Identities=10% Similarity=0.159 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHH----hhcC--CChHHHHHHHHHHhhcCCeeee
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIR----FKSN--LMPTQLNKILKQLETKKIIKAV 79 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk----~ktn--L~~~~l~K~LK~LE~k~LIK~V 79 (117)
.|++.++.|...+.. |. -..+|. ..++ ++...+...|..|+..+||...
T Consensus 287 ~l~~~~~~~l~~la~-g~---~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~ 341 (357)
T 2fna_A 287 IARKRYLNIMRTLSK-CG---KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKE 341 (357)
T ss_dssp GGHHHHHHHHHHHTT-CB---CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEES
T ss_pred cccHHHHHHHHHHHc-CC---CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEec
Confidence 577888888888766 53 445665 3467 8899999999999999999865
No 311
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=52.57 E-value=22 Score=24.44 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 35 VYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 35 VY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
|...++..+.+ |+ ....++++.....+++.|...|||+-|.
T Consensus 10 IL~~L~~~~~~--is---~e~l~Ise~~~~~il~~L~d~GyI~Gv~ 50 (102)
T 2hgc_A 10 ILKEIFEGNTP--LS---ENDIGVTEDQFDDAVNFLKREGYIIGVH 50 (102)
T ss_dssp HHHHHHHHCSC--CC---HHHHTSCHHHHHHHHHHHHHHTSEECCE
T ss_pred HHHHHHhCCCc--CC---HHhcCCCHHHHHHHHHHHHHCCCccceE
Confidence 44455564433 44 3556999999999999999999998775
No 312
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=51.79 E-value=42 Score=22.36 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCcccc
Q psy7778 34 VVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLT 89 (117)
Q Consensus 34 lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYt 89 (117)
.||+++.+.| .+-.++|++.|++.+..+.-+|==|-..+=|.--+ .++.||-
T Consensus 12 ~VW~~L~~~~--~~s~~el~k~t~l~d~el~lAIGWLaREdKI~~~~--~~~~l~v 63 (82)
T 2l02_A 12 KVWHALNEAD--GISIPELARKVNLSVESTALAVGWLARENKVVIER--KNGLIEI 63 (82)
T ss_dssp HHHHHHHHCC--SBCHHHHHHHHTCCHHHHHHHHHHHHTTTSEEEEE--ETTEEEE
T ss_pred HHHHHHhccC--CCCHHHHHHHhCCCHHHHHHHHHHHhccCceeEEe--eCCEEEE
Confidence 7999999955 77789999999999999999999995555444333 2555553
No 313
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=51.55 E-value=32 Score=23.01 Aligned_cols=42 Identities=5% Similarity=-0.024 Sum_probs=34.1
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHH
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQL 70 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~L 70 (117)
..||+.++.|+.+... .|.-.++|-..+|++.++|.+.+...
T Consensus 21 ~~L~~~~r~vl~l~y~---~g~s~~EIA~~lgiS~~tV~~~l~ra 62 (113)
T 1s7o_A 21 ALLTDKQMNYIELYYA---DDYSLAEIADEFGVSRQAVYDNIKRT 62 (113)
T ss_dssp GGSCHHHHHHHHHHHH---TCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHH---cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 6799999988877654 57889999999999999877665544
No 314
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=51.47 E-value=32 Score=22.86 Aligned_cols=42 Identities=7% Similarity=0.015 Sum_probs=33.6
Q ss_pred cc-cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHH
Q psy7778 24 KL-KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68 (117)
Q Consensus 24 k~-~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK 68 (117)
.+ ..||+.++.|+.+.. -.|.-.++|-..+|++.+++.+.+.
T Consensus 21 ~l~~~L~~~~r~vl~l~~---~~g~s~~EIA~~lgiS~~tV~~~l~ 63 (113)
T 1xsv_A 21 FYQSLLTNKQRNYLELFY---LEDYSLSEIADTFNVSRQAVYDNIR 63 (113)
T ss_dssp HHGGGSCHHHHHHHHHHH---TSCCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 46 789999998887765 4678999999999999988655443
No 315
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=50.84 E-value=8.9 Score=20.62 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=29.8
Q ss_pred CCCHHH-HHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHh
Q psy7778 27 DSDNEE-KVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71 (117)
Q Consensus 27 ~L~~eE-~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE 71 (117)
.+++++ ..|..+.+ .|+..++|-..+|++.++|.+.++...
T Consensus 5 ~~~~~~~~~i~~l~~----~g~s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLE----KGHPRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHH----TTCCHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHH----cCCCHHHHHHHHCCCHHHHHHHHHHcc
Confidence 355543 34554443 468899999999999999999987653
No 316
>3anw_B GINS23, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=50.73 E-value=8.1 Score=28.94 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=18.8
Q ss_pred cccccCCCHHHHHHHHHHHHhcC
Q psy7778 22 NEKLKDSDNEEKVVYKIIEEAGN 44 (117)
Q Consensus 22 a~k~~~L~~eE~lVY~~Ie~AGn 44 (117)
.+-+..||+||+.||..|..+=|
T Consensus 143 ~eil~rLTpEEk~iy~~l~~~i~ 165 (171)
T 3anw_B 143 LELLSRLAPEERRIYLQMSKIRN 165 (171)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHH
Confidence 45588999999999999986633
No 317
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=50.13 E-value=9.9 Score=26.68 Aligned_cols=44 Identities=11% Similarity=0.337 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhc---CCeee
Q psy7778 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK---KIIKA 78 (117)
Q Consensus 31 eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k---~LIK~ 78 (117)
.+..++..|.+.|+-. .=-.+.++.|+.|++.|+.||.. .|+..
T Consensus 4 ~~l~~f~~v~~~~s~t----~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R 50 (291)
T 3szp_A 4 DDLNLFRLVVENGSYT----STSKKTMIPVATITRRIQALEDSLNLRLLNR 50 (291)
T ss_dssp HHHHHHHHHHHHSSHH----HHHHHHTCCHHHHHHHHHHHHHHHTCCCEEE
T ss_pred HHHHHHHHHHhcCCHH----HHHHHhCCCHHHHHHHHHHHHHHhCCceEee
Confidence 4444555555555421 12567899999999999999983 45543
No 318
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=49.89 E-value=28 Score=26.30 Aligned_cols=47 Identities=17% Similarity=0.350 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 33 KVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 33 ~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
..|-.++..+|..... .++...+|++...+...|..|...+-|-.+.
T Consensus 5 ~~l~~~L~~~~~~~~~-~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~~ 51 (258)
T 1lva_A 5 KILAQIIQEHREGLDW-QEAATRASLSLEETRKLLQSMAAAGQVTLLR 51 (258)
T ss_dssp HHHHHHHHTCTTCEEH-HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHhcCCCCCH-HHHHHHhCCCHHHHHHHHHHHHhCCCEEEec
Confidence 3566778877766444 9999999999999999999998877766664
No 319
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=49.20 E-value=12 Score=26.84 Aligned_cols=58 Identities=10% Similarity=0.213 Sum_probs=44.4
Q ss_pred cccCCCHHHHHH---HHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhh-cCCeeeeccccC
Q psy7778 24 KLKDSDNEEKVV---YKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLET-KKIIKAVKSVAN 84 (117)
Q Consensus 24 k~~~L~~eE~lV---Y~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~-k~LIK~VKsV~g 84 (117)
-+.++|++|+.= -.+|.. ++==.+-|-+-+|.+...|++.||+.++ ++.+|.++++++
T Consensus 66 II~SMT~~Er~n~~~P~ii~~---~~SRk~RIA~GSG~~v~eVn~LLkqf~qm~kmmKkm~~~~~ 127 (129)
T 1mfq_C 66 IMDSMNDQELDSTDGAKVFSK---QPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKG 127 (129)
T ss_dssp HHTTSCHHHHTCTTHHHHHHH---CTHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHSCSCC-
T ss_pred HHHccCHHHHhcCCCcccccC---ChHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 467899999876 777743 2334567777899999999999999987 888888876543
No 320
>3khy_A Propionate kinase; csgid, IDP01739, ATP-binding, nucleotide-binding, transferase, structural genomics; 1.98A {Francisella tularensis subsp}
Probab=48.05 E-value=9.9 Score=31.77 Aligned_cols=46 Identities=17% Similarity=0.204 Sum_probs=37.6
Q ss_pred ChHHHHHHHHHHhhcCCeeeecc-----ccCCcccccCc-cccccchhhhhh
Q psy7778 59 MPTQLNKILKQLETKKIIKAVKS-----VANIEYLTEGT-VNAMVLPSRKKR 104 (117)
Q Consensus 59 ~~~~l~K~LK~LE~k~LIK~VKs-----V~gg~wYtdg~-~D~~fI~~l~~~ 104 (117)
|...+..+|+.|+..++++++.. |+||..|++.. .|.+.++.|+.-
T Consensus 59 h~~a~~~il~~L~~~~~~~~i~aVGHRvVhGG~~f~~~v~I~~~vl~~l~~~ 110 (384)
T 3khy_A 59 YKDVFEMLKDFLVENKHLEKIVAIGHRVVHGGQYFSKSVLINADSLEKIKAC 110 (384)
T ss_dssp HHHHHHHHHHHHHHTTCGGGEEEEEEEESCCTTTCSSCEECSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCccceeEEecCCCCCCCcCCCCEEECHHHHHHHHhc
Confidence 45679999999999888776544 47999999998 899999988764
No 321
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=47.74 E-value=30 Score=30.37 Aligned_cols=49 Identities=8% Similarity=0.127 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCee
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIK 77 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK 77 (117)
.+|+-+..|.-+..+ ...+-..+|...|||+...+.++|.+|...+++.
T Consensus 586 ~vs~~Qa~iLllFn~--~~~~t~~ei~~~t~i~~~~l~r~L~~l~k~~iL~ 634 (760)
T 1ldj_A 586 QASTFQMAILLQYNT--EDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLV 634 (760)
T ss_dssp ECCHHHHHHHHGGGS--SSEEEHHHHHHHTCCCHHHHHHHHHHHHHTTTEE
T ss_pred EEcHHHHHHHHHhcC--CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcce
Confidence 477788877766554 3456679999999999999999999999988886
No 322
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=47.12 E-value=37 Score=22.04 Aligned_cols=41 Identities=15% Similarity=0.057 Sum_probs=32.3
Q ss_pred ccc-CCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHH
Q psy7778 24 KLK-DSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68 (117)
Q Consensus 24 k~~-~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK 68 (117)
.+. .||+.++.|+.+ --.|.-.++|-..+|++..+|.+.+.
T Consensus 105 ~l~~~L~~~~r~v~~~----~~~g~s~~EIA~~lgis~~tV~~~~~ 146 (164)
T 3mzy_A 105 FSENNFSKFEKEVLTY----LIRGYSYREIATILSKNLKSIDNTIQ 146 (164)
T ss_dssp HHHHHSCHHHHHHHHH----HTTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHH----HHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 455 899999988762 34799999999999999998755443
No 323
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=46.97 E-value=12 Score=26.06 Aligned_cols=47 Identities=6% Similarity=0.031 Sum_probs=38.1
Q ss_pred ccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcC-----CChHHHHHHHHHHh
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSN-----LMPTQLNKILKQLE 71 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktn-----L~~~~l~K~LK~LE 71 (117)
...||+-|+.|..++-+..++-+-.++|-.+.+ +..++|...++.|-
T Consensus 141 ~~~Lt~rE~~vL~~l~~~~~~~~s~~~Ia~~l~~~~~~~s~~tv~~~i~~lr 192 (223)
T 2hqr_A 141 EVEVKGKPFEVLTHLARHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIR 192 (223)
T ss_dssp EECCCSTTTHHHHHHHHTCSEEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHH
T ss_pred EEecCHHHHHHHHHHHhCCCCcCCHHHHHHHhcCCccCCCCcCHHHHHHHHH
Confidence 346999999999999888778899999999998 88877766666553
No 324
>1ust_A Histone H1; DNA binding protein, linker histone, DNA binding domain, winged helix fold; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=46.51 E-value=43 Score=22.16 Aligned_cols=57 Identities=11% Similarity=-0.006 Sum_probs=40.7
Q ss_pred cCCCHHHHHHHHHHHHhcC-CcccHHHHHhh------cCC----ChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 26 KDSDNEEKVVYKIIEEAGN-KGIWMRDIRFK------SNL----MPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn-~GIWtkdIk~k------tnL----~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
..-++-..||...|..... .|-....|+.- .++ ....|+++||.+...|.+..+|++
T Consensus 5 ~~hP~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~~~~~~~~~~~lk~aLK~~v~~G~lvq~KGa 72 (93)
T 1ust_A 5 ASSKSYRELIIEGLTALKERKGSSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEAGDFEQPKGP 72 (93)
T ss_dssp SCCCCHHHHHHHHHTTTTTTSCEEHHHHHHHHHHHCHHHHTSTTHHHHHHHHHHHHHHTTSEECTTCT
T ss_pred CCCCCHHHHHHHHHHHcccCCCcCHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHHHHcCCEEeccCC
Confidence 3455666688888887766 58877777651 112 355799999999999888888753
No 325
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=46.42 E-value=12 Score=26.70 Aligned_cols=42 Identities=24% Similarity=0.409 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhc
Q psy7778 28 SDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK 73 (117)
Q Consensus 28 L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k 73 (117)
|+-++..++..+.+.|+ + ..=-.+.|+.|+.|++.|+.||..
T Consensus 3 ~~l~~l~~f~~v~~~gs--~--t~AA~~L~isq~avS~~i~~LE~~ 44 (306)
T 3hhg_A 3 TNSEELTVFVQVVESGS--F--SRAAEQLAMANSAVSRIVKRLEEK 44 (306)
T ss_dssp CCHHHHHHHHHHHHSSS--H--HHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCC--H--HHHHHHhCCCHHHHHHHHHHHHHH
Confidence 44456666666666664 2 223668899999999999999984
No 326
>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_7
Probab=46.10 E-value=11 Score=28.32 Aligned_cols=56 Identities=11% Similarity=0.190 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhcCCcccHHHHHhh---cCCChHHHHHHHHHHhhcCCeeeeccccCCccc
Q psy7778 32 EKVVYKIIEEAGNKGIWMRDIRFK---SNLMPTQLNKILKQLETKKIIKAVKSVANIEYL 88 (117)
Q Consensus 32 E~lVY~~Ie~AGn~GIWtkdIk~k---tnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wY 88 (117)
-..||..+..-|-. +=.+|..+- .|+|--.+-|++++|.|+|++|+.-+=.+==||
T Consensus 9 R~~IYe~LFkeGV~-VaKKD~~kHpel~~vpNL~ViKamqSLkSRGyVkEqFaWrhyYw~ 67 (162)
T 2xzm_7 9 KIRIYKQLLQDGVF-VLKKDFEGHHEETGVPNLHCYILVRSLKDRGFLEEIFNWGFTYYY 67 (162)
T ss_dssp HHHHHHHHHHHTEE-EEESCSSSBCTTTCCBHHHHHHHHHHHHHHTSEEEEEETTEEEEE
T ss_pred HHHHHHHHhhcCcE-EEeccccCCCcccCcCcHHHHHHHhcccccccccceeeeEEEEEE
Confidence 34788888776521 112222210 357777899999999999999998887766666
No 327
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=44.76 E-value=49 Score=21.35 Aligned_cols=47 Identities=9% Similarity=0.005 Sum_probs=35.4
Q ss_pred cCCCHHHHH-HHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCe
Q psy7778 26 KDSDNEEKV-VYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKII 76 (117)
Q Consensus 26 ~~L~~eE~l-VY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LI 76 (117)
..++.+++. |..+. ..|...++|-..+|++.++|.+.++.....+..
T Consensus 5 ~~~s~~~r~~i~~~~----~~G~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~ 52 (141)
T 1u78_A 5 SALSDTERAQLDVMK----LLNVSLHEMSRKISRSRHCIRVYLKDPVSYGTS 52 (141)
T ss_dssp CCCCHHHHHHHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHHSGGGTTCC
T ss_pred ccCCHHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHcccccCCc
Confidence 457777663 33332 357889999999999999999999988765543
No 328
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=44.28 E-value=34 Score=23.99 Aligned_cols=49 Identities=10% Similarity=0.123 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhc---CCeeeec
Q psy7778 28 SDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK---KIIKAVK 80 (117)
Q Consensus 28 L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k---~LIK~VK 80 (117)
++..+..++..|.+.|+-. .--.+.|+.++.+++.|+.||.. .|+..-.
T Consensus 24 ~~~~~L~~f~av~e~gS~s----~AA~~L~iSqsavS~~I~~LE~~lG~~Lf~R~~ 75 (135)
T 2ijl_A 24 LGHGKVELMQLIAETGSIS----AAGRAMDMSYRRAWLLVDALNHMFRQPVICSQR 75 (135)
T ss_dssp ESHHHHHHHHHHHHHSCHH----HHHHHTTCCHHHHHHHHHHHHHHBSSCSEEECC
T ss_pred CCHHHHHHHHHHHHhCCHH----HHHHHHCcCHHHHHHHHHHHHHHHCCeeEEecC
Confidence 6667778888888888632 34668999999999999999996 6776653
No 329
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=44.28 E-value=29 Score=23.56 Aligned_cols=46 Identities=7% Similarity=0.138 Sum_probs=35.4
Q ss_pred ccccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHH----HHHHHHh
Q psy7778 23 EKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLN----KILKQLE 71 (117)
Q Consensus 23 ~k~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~----K~LK~LE 71 (117)
..+..||+.++.|+.+-.- .|.-.++|-..+|++..+|. ++++.|.
T Consensus 136 ~~l~~L~~~~r~vl~l~~~---~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr 185 (194)
T 1or7_A 136 RTIESLPEDLRMAITLREL---DGLSYEEIAAIMDCPVGTVRSRIFRAREAID 185 (194)
T ss_dssp HHHHHSCHHHHHHHHHHHT---TCCCHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHhHHHHH---cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4578899999988766543 67899999999999988755 4555553
No 330
>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C
Probab=43.59 E-value=13 Score=28.28 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhcCCc-c-cHHHHHhh--------cCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 32 EKVVYKIIEEAGNKG-I-WMRDIRFK--------SNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 32 E~lVY~~Ie~AGn~G-I-WtkdIk~k--------tnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
..+||+-|++.|..| + -.-+|..- .||+..+|.|+|+.||.+|=..-++
T Consensus 132 a~~I~~Wv~~tG~~~sV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~GKaqi~~ 190 (202)
T 1xb4_A 132 ASLILQWFEDSGKLNQVITLYELSEGDETVNWEFHRMPESLLYYCLKPLCDRNRATMLK 190 (202)
T ss_dssp HHHHHHHHHTTSCTTSCEEHHHHC--CCSCCSTTTTCCHHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHHHHHhcCCcCcEEEeehcccCCCCCCccccCCCHHHHHHHHHHHHHcCCEEEee
Confidence 459999999999765 2 22244443 5799999999999999988655554
No 331
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=43.43 E-value=13 Score=26.65 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhc---CCeeeeccc
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK---KIIKAVKSV 82 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k---~LIK~VKsV 82 (117)
.|+-.+..++..|-+.|+- ..=-.+.|+.|+.|++.|+.||.. .|+..-++|
T Consensus 5 ~m~l~~L~~f~~v~~~gs~----s~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R~~~~ 59 (303)
T 3isp_A 5 QLDGPQLAALAAVVELGSF----DAAAERLHVTPSAVSQRIKSLEQQVGQVLVVREKPC 59 (303)
T ss_dssp CCCSHHHHHHHHHHHHTCH----HHHHTTTTCCHHHHHHHHHHHHHHHTSCCEECSSSC
T ss_pred CCCHHHHHHHHHHHHcCCH----HHHHHHhCCChHHHHHHHHHHHHHhCCeeEEcCCCC
Confidence 4555677777777777752 223567899999999999999984 666553444
No 332
>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C
Probab=43.12 E-value=13 Score=27.84 Aligned_cols=48 Identities=15% Similarity=0.386 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCCc-cc-HHHHHhh--------cCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 33 KVVYKIIEEAGNKG-IW-MRDIRFK--------SNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 33 ~lVY~~Ie~AGn~G-IW-tkdIk~k--------tnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
.+||+-+++.|..| |= .-+|..- .||+..+|.|+|+.||.+|=..-++
T Consensus 109 ~~iy~wv~~~G~~~sV~TlyEL~~Gd~t~~~ef~gld~~vL~kaL~~L~~~gKaql~~ 166 (176)
T 3cuq_C 109 KLIYQWVSRSGQNNSVFTLYELTNGEDTEDEEFHGLDEATLLRALQALQQEHKAEIIT 166 (176)
T ss_dssp HHHHHHHHTTTCCSCEEEHHHHHHCTTTTTSTTTTCCHHHHHHHHHHHHHHTSEEECC
T ss_pred HHHHHHHHhcCCcCcEEEEeeeccCCCCCCCcccCCCHHHHHHHHHHHHHcCCeEEee
Confidence 48999999999765 22 2244443 5799999999999999988666655
No 333
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=42.94 E-value=15 Score=26.43 Aligned_cols=39 Identities=23% Similarity=0.253 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhc
Q psy7778 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK 73 (117)
Q Consensus 31 eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k 73 (117)
.+..++..+-+.|+ +- .=-.+.++.|+.|++.|+.||..
T Consensus 5 ~~L~~f~~v~~~gs--~t--~AA~~L~isq~avS~~i~~LE~~ 43 (305)
T 3fxq_A 5 QTLQALICIEEVGS--LR--AAAQLLHLSQPALSAAIQQLEDE 43 (305)
T ss_dssp HHHHHHHHHHHHSC--HH--HHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC--HH--HHHHHhCCCHHHHHHHHHHHHHH
Confidence 34445555655554 22 22578999999999999999983
No 334
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=42.90 E-value=28 Score=24.93 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=35.4
Q ss_pred ccCCCHHHH----HHHHHHHHhc-CCcccHHHHHhhcCCChHHHHHHHH
Q psy7778 25 LKDSDNEEK----VVYKIIEEAG-NKGIWMRDIRFKSNLMPTQLNKILK 68 (117)
Q Consensus 25 ~~~L~~eE~----lVY~~Ie~AG-n~GIWtkdIk~ktnL~~~~l~K~LK 68 (117)
.+.||+.++ .+...|+..- ..|+-.+++-.++|+.++.+++.++
T Consensus 4 ~~~lt~~~~~~~~~~~~~l~~~r~~~g~t~~~lA~~~gis~~~i~~~~~ 52 (236)
T 3bdn_A 4 KKPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFN 52 (236)
T ss_dssp SCCCCSHHHHHHHHHHHHHHHHTTTTTCCSHHHHHHHTSCHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 456777666 5778887765 4799999999999999999988765
No 335
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=42.76 E-value=66 Score=21.12 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHhcC-CcccHHHHHh----hcCC---ChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 27 DSDNEEKVVYKIIEEAGN-KGIWMRDIRF----KSNL---MPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn-~GIWtkdIk~----ktnL---~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
.-++-..||...|.+... .|.....|+. .... ....|+++||.+...|.+..+++.
T Consensus 6 ~hP~y~~MI~eAI~~lker~GsS~~AI~KyI~~~y~~~~~~~~~l~~aLk~~v~~G~l~q~Kg~ 69 (90)
T 1hst_A 6 SHPTYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYKVGHNADLQIKLSIRRLLAAGVLKQTKGV 69 (90)
T ss_dssp CCCCHHHHHHHHHHTCCCSSCEEHHHHHHHHHHHSCCCTTHHHHHHHHHHHHHHTTSEEEECCS
T ss_pred CCCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHHccCchhHHHHHHHHHHHHHHcCCeeeecCC
Confidence 345556688888888777 5777776654 2333 355799999999999999999874
No 336
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=42.04 E-value=15 Score=28.21 Aligned_cols=33 Identities=9% Similarity=0.211 Sum_probs=31.1
Q ss_pred cccHHHHHhhcCCChHHHHHHHHHHhhcCCeee
Q psy7778 46 GIWMRDIRFKSNLMPTQLNKILKQLETKKIIKA 78 (117)
Q Consensus 46 GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~ 78 (117)
++-..+|-.+++++...+.+.|+.|.+.|++.+
T Consensus 55 ~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~ 87 (348)
T 3lst_A 55 PRTPAELAAATGTDADALRRVLRLLAVRDVVRE 87 (348)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEe
Confidence 577789999999999999999999999999998
No 337
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=41.74 E-value=24 Score=19.78 Aligned_cols=35 Identities=11% Similarity=0.160 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHH
Q psy7778 30 NEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68 (117)
Q Consensus 30 ~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK 68 (117)
+....|..+. ..|.-.++|-..+|++.+++.+.++
T Consensus 19 ~~~~~i~~l~----~~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 19 DLVSVAHELA----KMGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHH----HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3444555542 3678999999999999999999875
No 338
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=40.79 E-value=1.3e+02 Score=23.48 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=45.7
Q ss_pred ccCCCHHHHHHHHHHHHhcC-Cccc----HHHHHhhcCCChHHHHHHHHHHhhcCCeeee
Q psy7778 25 LKDSDNEEKVVYKIIEEAGN-KGIW----MRDIRFKSNLMPTQLNKILKQLETKKIIKAV 79 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn-~GIW----tkdIk~ktnL~~~~l~K~LK~LE~k~LIK~V 79 (117)
+..++++...|++.+++.|. .-.| -.+|+..+||.-.+..|+|=.|-..++|..-
T Consensus 219 ~~~~~~~a~~il~~L~~~~G~l~~~DkS~pe~I~~~f~~SK~~FKrAiG~L~K~~~I~~~ 278 (285)
T 3go5_A 219 FEMLENDAQMILTYLESNGGFMTLNDKSSPDDIKATFGISKGQFKKALGGLMKAGKIKQD 278 (285)
T ss_dssp CCCCCHHHHHHHHHHHHTTTEESCCTTSCHHHHHHHHSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred hhccchHHHHHHHHHHhcCCeeccCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCcEEEc
Confidence 45788888899999998753 3333 4689999999999999999999999998753
No 339
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=40.16 E-value=75 Score=23.92 Aligned_cols=65 Identities=8% Similarity=0.022 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCcccccCccc
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLTEGTVN 94 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYtdg~~D 94 (117)
.++.+...|..+++. +.|+-..++..+.|.+.....-.|..+|..|++=-=.++.|--||. +-|+
T Consensus 151 ~~~~~~~~il~~~~~--~g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~D~~~eg~~y~p-n~f~ 215 (218)
T 3cuq_B 151 KEEEMVASALETVSE--KGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRDDSVEGLRFYP-NLFM 215 (218)
T ss_dssp CGGGGHHHHHHHHHH--TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEESSSCEEEEE-CGGG
T ss_pred chHHHHHHHHHHHHH--CCCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEECCCCceEEeh-hhcc
Confidence 455567778888875 4599999999999999999999999999999986655666544554 4444
No 340
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=40.13 E-value=38 Score=20.53 Aligned_cols=26 Identities=8% Similarity=0.161 Sum_probs=21.8
Q ss_pred cCCcccHHHHHhhcCCChHHHHHHHH
Q psy7778 43 GNKGIWMRDIRFKSNLMPTQLNKILK 68 (117)
Q Consensus 43 Gn~GIWtkdIk~ktnL~~~~l~K~LK 68 (117)
...|+-..++-.++|++++.|++..+
T Consensus 27 ~~~glsq~~lA~~~gis~~~is~~e~ 52 (92)
T 1lmb_3 27 NELGLSQESVADKMGMGQSGVGALFN 52 (92)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45688899999999999998888765
No 341
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=40.07 E-value=17 Score=26.55 Aligned_cols=48 Identities=8% Similarity=0.033 Sum_probs=41.0
Q ss_pred CCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec
Q psy7778 28 SDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 28 L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK 80 (117)
||.-...++.+|.-- ..|-..+|....|+. .+.+++.|..+|||+++.
T Consensus 92 LS~aaLEtLaiIay~--qPiTR~eI~~irGv~---~~~~v~~L~e~glI~e~g 139 (162)
T 1t6s_A 92 LSRSMLEVLAVVAWH--QPVTKGEIQQIRGAS---PDYSIDRLLARGLIEVRG 139 (162)
T ss_dssp HHHHHHHHHHHHHHH--CSEEHHHHHHHHTCC---CCSHHHHHHHTTSEEEEE
T ss_pred cCHHHHHHHHHHHHc--CCcCHHHHHHHHCCC---HHHHHHHHHHCCCEEEcc
Confidence 444455699999775 689999999999998 889999999999999865
No 342
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*
Probab=39.70 E-value=47 Score=25.82 Aligned_cols=48 Identities=19% Similarity=0.238 Sum_probs=38.7
Q ss_pred HHHHHHHHHHh-c-CCcccHHHHHhhcCC-Ch---HHHHHHHHHHhhcCCeeee
Q psy7778 32 EKVVYKIIEEA-G-NKGIWMRDIRFKSNL-MP---TQLNKILKQLETKKIIKAV 79 (117)
Q Consensus 32 E~lVY~~Ie~A-G-n~GIWtkdIk~ktnL-~~---~~l~K~LK~LE~k~LIK~V 79 (117)
|.-|+++|.++ | +..+-..+|-.+++. +. ..+.+.|+.|.+.+++.+.
T Consensus 43 ~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 96 (368)
T 3reo_A 43 ELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYT 96 (368)
T ss_dssp HTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred HCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeEEe
Confidence 34477888876 6 456899999999984 43 3899999999999999986
No 343
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=39.69 E-value=31 Score=24.83 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHH
Q psy7778 29 DNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ 69 (117)
Q Consensus 29 ~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~ 69 (117)
++++..|+..|.+--.+|.-.+.|-..+|++.+++.|+|+.
T Consensus 158 ~~~~a~iv~~i~~~~~~G~s~~~Ia~~l~is~~tv~r~l~~ 198 (209)
T 2r0q_C 158 DPQKRVIYHRVVEMLEEGQAISKIAKEVNITRQTVYRIKHD 198 (209)
T ss_dssp SHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHhc
Confidence 45665555555554457888999999999999999999874
No 344
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=38.04 E-value=26 Score=23.88 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=36.1
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCee
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIK 77 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK 77 (117)
+.++.+++. .++... ..|...++|-..++++.++|.+.++..+..+...
T Consensus 24 ~~~s~e~r~--~ii~l~-~~G~s~~~IA~~lgis~~TV~rwl~r~~~~G~~~ 72 (159)
T 2k27_A 24 RPLPEVVRQ--RIVDLA-HQGVRPCDISRQLRVSHGCVSKILGRYYETGSIR 72 (159)
T ss_dssp CSSCHHHHH--HHHHHH-HHTCCHHHHHHHHTCCSHHHHHHHCCSSTTSCCC
T ss_pred CCCCHHHHH--HHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHHHhcCCcc
Confidence 356776652 223322 3578899999999999999999999987777643
No 345
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=37.80 E-value=12 Score=26.76 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhc---CCeee
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK---KIIKA 78 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k---~LIK~ 78 (117)
.|+-.+..++..|.+.|+ +- .=-.+.++.|+.|++.|+.||.. .|+..
T Consensus 3 ~~~l~~l~~f~~v~~~~s--~s--~AA~~L~isq~avS~~i~~LE~~lg~~Lf~R 53 (306)
T 3fzv_A 3 SYTLRQLKYFVTTVECGS--VA--EASRKLYIAQPSISTAVKGLEESFGVQLFIR 53 (306)
T ss_dssp -CCHHHHHHHHHHHHSSS--HH--HHHHHHTCCC-CHHHHHHHHHHHC-CCCC--
T ss_pred CCCHHHHHHHHHHHHhCC--HH--HHHHHhCCCchHHHHHHHHHHHHhCCeeEee
Confidence 455566667777777665 22 22567899999999999999984 56544
No 346
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=36.96 E-value=45 Score=21.67 Aligned_cols=45 Identities=24% Similarity=0.293 Sum_probs=32.2
Q ss_pred ccCCCHHHH-HHHHHHHHhcCCcccHH-HHHhhcCCChHHHHHHHHHHhh
Q psy7778 25 LKDSDNEEK-VVYKIIEEAGNKGIWMR-DIRFKSNLMPTQLNKILKQLET 72 (117)
Q Consensus 25 ~~~L~~eE~-lVY~~Ie~AGn~GIWtk-dIk~ktnL~~~~l~K~LK~LE~ 72 (117)
-+.+|.+++ .|-.++++. |.-+. ++-...|++.++|.+.++.-+.
T Consensus 5 r~~~t~e~K~~iv~~~~~~---g~~~~~~~A~~~gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 5 RRQLTFREKSRIIQEVEEN---PDLRKGEIARRFNIPPSTLSTILKNKRA 51 (131)
T ss_dssp SCCCCHHHHHHHHHHHHHC---TTSCHHHHHHHHTCCHHHHHHHHHTHHH
T ss_pred ceeCCHHHHHHHHHHHHHC---CCCcHHHHHHHhCCCHHHHHHHHhchhh
Confidence 356888876 344444433 44554 8999999999999999987543
No 347
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=35.84 E-value=22 Score=27.64 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=31.8
Q ss_pred cccHHHHHhhcCCChHHHHHHHHHHhhcCCeeee
Q psy7778 46 GIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAV 79 (117)
Q Consensus 46 GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~V 79 (117)
.+-..+|-.+++++...+.+.|+.|.+.|++.+.
T Consensus 71 ~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~~ 104 (369)
T 3gwz_A 71 PRTATALAEATGAHEQTLRRLLRLLATVGVFDDL 104 (369)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEEe
Confidence 5778999999999999999999999999999875
No 348
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=35.70 E-value=7.8 Score=33.34 Aligned_cols=51 Identities=12% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcC-Ceeeecccc
Q psy7778 32 EKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKK-IIKAVKSVA 83 (117)
Q Consensus 32 E~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~-LIK~VKsV~ 83 (117)
+..|+..+++.+. .|-+.++-..+|+++..|..++++|++++ +|+.-.-+.
T Consensus 7 ~~~iL~~l~~~~~-~~~~~~~a~~~~~~~~~v~~~~~~L~~~~~~v~~~~~~~ 58 (508)
T 3l4g_A 7 AELLLRRLEASDG-GLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRST 58 (508)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHhcCC-CcCHHHHHHHcCCCHHHHHHHHHHHHhCCCeEEEEEEEE
Confidence 4556666654331 46778899999999999999999999998 988655553
No 349
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=35.20 E-value=1.2e+02 Score=23.53 Aligned_cols=51 Identities=14% Similarity=0.202 Sum_probs=43.8
Q ss_pred ccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCee
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIK 77 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK 77 (117)
...|+.++..|..+++. .-.+-..+|....|.+......+|..|+..|+.=
T Consensus 149 p~el~~D~~~vLela~~--~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~Gllw 199 (234)
T 3cuq_A 149 PAELNMDHTVVLQLAEK--NGYVTVSEIKASLKWETERARQVLEHLLKEGLAW 199 (234)
T ss_dssp CCCCCHHHHHHHHHHTT--TSEECHHHHHHHHTCCHHHHHHHHHHHHHHTSCE
T ss_pred CCccchHHHHHHHHHHh--cCcCcHHHHHHHhCCCHHHHHHHHHHHHhCCCEE
Confidence 34589999999988863 4578999999999999999999999999998863
No 350
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=35.17 E-value=77 Score=23.92 Aligned_cols=60 Identities=8% Similarity=0.099 Sum_probs=46.6
Q ss_pred ccccCCCHHHH-HHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhh-cCCeeeecccc
Q psy7778 23 EKLKDSDNEEK-VVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLET-KKIIKAVKSVA 83 (117)
Q Consensus 23 ~k~~~L~~eE~-lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~-k~LIK~VKsV~ 83 (117)
-.++.+|+-|+ .=|+..-++|-.|=| ++|-...|+..+.|+|||+.-.= .-+|..+.+++
T Consensus 19 N~~rplS~yErg~~y~r~L~~g~~~~Q-~~lA~~~giS~a~VSR~L~~A~LP~~lv~~fp~p~ 80 (189)
T 3mky_B 19 SHYRPTSAYERGQRYASRLQNEFAGNI-SALADAENISRKIITRCINTAKLPKSVVALFSHPG 80 (189)
T ss_dssp ----CCCHHHHHHHHHHHHHTTTTTCH-HHHHHHHTSCHHHHHHHHHHHHSCHHHHHTSSSGG
T ss_pred ccCCCCCHHHHHHHHHHHHhcCcccCH-HHHHHHHCCCHHHHHHHHHHhcCCHHHHHHcCCHH
Confidence 45889999887 778888888877765 56999999999999999998754 67777787776
No 351
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=35.07 E-value=17 Score=23.91 Aligned_cols=42 Identities=7% Similarity=0.050 Sum_probs=29.7
Q ss_pred ccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec-cccCCcccccCc
Q psy7778 47 IWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK-SVANIEYLTEGT 92 (117)
Q Consensus 47 IWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK-sV~gg~wYtdg~ 92 (117)
+-+.++...+|++..+| +..|..||+++.. +-+|--.|++..
T Consensus 2 ~~i~e~A~~~gvs~~tL----R~ye~~Gll~p~~r~~~g~R~Y~~~d 44 (108)
T 2vz4_A 2 YSVGQVAGFAGVTVRTL----HHYDDIGLLVPSERSHAGHRRYSDAD 44 (108)
T ss_dssp BCHHHHHHHHTCCHHHH----HHHHHHTSSCCSEECSSCCEEBCHHH
T ss_pred CCHHHHHHHHCcCHHHH----HHHHHCCCCCCCccCCCCCeecCHHH
Confidence 44677888899998654 5678889999987 544445566554
No 352
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=34.96 E-value=20 Score=26.76 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcCCcccH-HHHHhhc----CCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 32 EKVVYKIIEEAGNKGIWM-RDIRFKS----NLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 32 E~lVY~~Ie~AGn~GIWt-kdIk~kt----nL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
..+|..++.+.-.-|--. +.|...+ ++...+|-.+|+.||..|||.+...
T Consensus 38 r~~IL~lL~~~p~~GYeL~~~l~~~~~~~~~~s~g~lY~~L~rLe~~GlI~~~~~ 92 (204)
T 3l9f_A 38 KDIILGILSKKERSGYEINDILQNQLSYFYDGTYGMIYPTLRKLEKDGKITKEVV 92 (204)
T ss_dssp HHHHHHHTSSCCEEHHHHHHHHHHTSTTTEECCTTCHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHhCCccCCCcchHHHHHHHHHHCCCeEEEee
Confidence 446666665333333322 2232222 5889999999999999999987653
No 353
>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_K
Probab=34.55 E-value=39 Score=23.54 Aligned_cols=56 Identities=16% Similarity=0.104 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhcCCcccHHHHHh----hcCCChHHHHHHHHHHhhcCCeeeeccccCCccc
Q psy7778 32 EKVVYKIIEEAGNKGIWMRDIRF----KSNLMPTQLNKILKQLETKKIIKAVKSVANIEYL 88 (117)
Q Consensus 32 E~lVY~~Ie~AGn~GIWtkdIk~----ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wY 88 (117)
-..||..+..-|-... .+|... ..+.|.=.+-|++++|.|+|++|+.-+=..==||
T Consensus 8 r~~IYe~LFkEGV~va-kKD~~~~kH~el~vpNL~Vik~mqSLkSrGyVkeqFaWrh~Yw~ 67 (105)
T 3u5c_K 8 RNKIHQYLFQEGVVVA-KKDFNQAKHEEIDTKNLYVIKALQSLTSKGYVKTQFSWQYYYYT 67 (105)
T ss_dssp HHHHHHHHHHHSEEEC-CSCSCCSSCSSSSSCHHHHHHHHHHHHHTSSEEEECTTTCCEEE
T ss_pred HHHHHHHHhhCCcEEE-EcCCCCCCCCccCccchhHHHHHhcccccceeccEecceEEEEE
Confidence 4578888877653222 122210 1236667799999999999999998877666666
No 354
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=32.75 E-value=1.3e+02 Score=21.91 Aligned_cols=53 Identities=11% Similarity=0.187 Sum_probs=39.7
Q ss_pred cCCCHHHHHHH-HHHHHhcCCcccHHHHHhhcCCChHHHHHHHHH-HhhcCCeee
Q psy7778 26 KDSDNEEKVVY-KIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ-LETKKIIKA 78 (117)
Q Consensus 26 ~~L~~eE~lVY-~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~-LE~k~LIK~ 78 (117)
.+++..|+.+. .+.+..+....-...+....|++.+++.+-++. +...++|..
T Consensus 243 ~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~ 297 (324)
T 1hqc_A 243 LGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKR 297 (324)
T ss_dssp TCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhc
Confidence 35777665444 445555556677788999999999999998877 788999974
No 355
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=32.23 E-value=35 Score=24.10 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=33.3
Q ss_pred cccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeeccccCCcccccCccc
Q psy7778 46 GIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVANIEYLTEGTVN 94 (117)
Q Consensus 46 GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~gg~wYtdg~~D 94 (117)
-.-+.++-..+|++.. .|+..|..|||.+..+-+|--.|++..+.
T Consensus 11 ~~~i~e~A~~~gvs~~----TLR~ye~~Gll~p~r~~~g~R~Y~~~dl~ 55 (154)
T 2zhg_A 11 LLTPGEVAKRSGVAVS----ALHFYESKGLITSIRNSGNQRRYKRDVLR 55 (154)
T ss_dssp CBCHHHHHHHHTSCHH----HHHHHHHTTSSCCEECTTSCEEBCTTHHH
T ss_pred CCCHHHHHHHHCcCHH----HHHHHHHcCCCCcccCCCCCEEeCHHHHH
Confidence 4567788888999875 45678999999987764555667777643
No 356
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=31.82 E-value=33 Score=25.04 Aligned_cols=44 Identities=18% Similarity=0.141 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCcccHHHHHhhcC--------------CChHHHHHHHHHHhhcCCeeeec
Q psy7778 35 VYKIIEEAGNKGIWMRDIRFKSN--------------LMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 35 VY~~Ie~AGn~GIWtkdIk~ktn--------------L~~~~l~K~LK~LE~k~LIK~VK 80 (117)
|.-.|.--|.-|+ ..|++..| =.-+++.+||.+||.-+||...+
T Consensus 61 i~R~lYl~g~vGV--~~lrk~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~g~vek~~ 118 (144)
T 3u5c_T 61 VARHIYMRKQVGV--GKLNKLYGGAKSRGVRPYKHIDASGSINRKVLQALEKIGIVEISP 118 (144)
T ss_dssp HHHHHHTSSBCCH--HHHHHHHCCEEEETTEEEEECCCCHHHHHHHHHHHHHTTSEECCS
T ss_pred HHHHHHhcCCCcH--HHHHHHHCCCCCCCCCCccccccCcHHHHHHHHHHHHCCCeeecC
Confidence 5555555566665 56666654 34489999999999999998765
No 357
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=31.66 E-value=8.2 Score=26.64 Aligned_cols=51 Identities=22% Similarity=0.368 Sum_probs=38.4
Q ss_pred cccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhh-cCCeeee
Q psy7778 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLET-KKIIKAV 79 (117)
Q Consensus 24 k~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~-k~LIK~V 79 (117)
-+.++|++|+.=-.+|..+ =.+-|-.-+|.+...|++.||+.++ ++.+|.+
T Consensus 52 II~SMT~~Er~~P~ii~~S-----R~~RIA~GSG~~v~eVn~LLkqf~~m~kmmk~m 103 (105)
T 1hq1_A 52 IINSMTMKERAKPEIIKGS-----RKRRIAAGSGMQVQDVNRLLKQFDDMQRMMKKM 103 (105)
T ss_dssp HHHTSCHHHHHCGGGCCHH-----HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHhhChhhcCHH-----HHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 4678899888766666322 4566777799999999999999977 6665554
No 358
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=30.23 E-value=11 Score=26.51 Aligned_cols=21 Identities=14% Similarity=0.282 Sum_probs=0.0
Q ss_pred HhhcCCChHHHHHHHHHHhhc
Q psy7778 53 RFKSNLMPTQLNKILKQLETK 73 (117)
Q Consensus 53 k~ktnL~~~~l~K~LK~LE~k 73 (117)
-.+.++.|+.|++.|+.||..
T Consensus 19 A~~L~isq~avS~~i~~LE~~ 39 (300)
T 3mz1_A 19 SASLNMPKATVTNLIQGLEAH 39 (300)
T ss_dssp ---------------------
T ss_pred HHHhCCCHHHHHHHHHHHHHH
Confidence 456899999999999999974
No 359
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=29.99 E-value=1e+02 Score=19.25 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHh
Q psy7778 34 VVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71 (117)
Q Consensus 34 lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE 71 (117)
.|...|++--...+-..+|-...||+...+.+.+|...
T Consensus 6 ~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~~ 43 (108)
T 3mn2_A 6 QVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRSR 43 (108)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHHHh
Confidence 46677877777778889999999999999999998763
No 360
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=29.15 E-value=95 Score=22.60 Aligned_cols=42 Identities=14% Similarity=0.005 Sum_probs=34.4
Q ss_pred cCCCH-HHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHH
Q psy7778 26 KDSDN-EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQL 70 (117)
Q Consensus 26 ~~L~~-eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~L 70 (117)
.+|++ |+-.-|....+. |.-..+|-.+.|+..+.|++.|+-|
T Consensus 34 edL~piE~A~a~~~L~~~---G~t~eeiA~~lG~s~s~V~~~LrLl 76 (178)
T 1r71_A 34 NELTPREIADFIGRELAK---GKKKGDIAKEIGKSPAFITQHVTLL 76 (178)
T ss_dssp TCCCHHHHHHHHHHHHHT---TCCHHHHHHHHTCCHHHHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHHHc---CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 57888 555666655554 7888999999999999999999887
No 361
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=28.81 E-value=27 Score=22.89 Aligned_cols=41 Identities=7% Similarity=0.188 Sum_probs=28.5
Q ss_pred HHHHHhhcCCChHHHHHHHHHHhhcCCeeeec-cccCCcccccCcc
Q psy7778 49 MRDIRFKSNLMPTQLNKILKQLETKKIIKAVK-SVANIEYLTEGTV 93 (117)
Q Consensus 49 tkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK-sV~gg~wYtdg~~ 93 (117)
+.++...+|++..+| +..|..|++++.. +-+|--+|++..+
T Consensus 5 i~e~A~~~gvs~~tL----R~ye~~Gll~p~~~~~~g~R~Y~~~dl 46 (109)
T 1r8d_A 5 VKQVAEISGVSIRTL----HHYDNIELLNPSALTDAGYRLYSDADL 46 (109)
T ss_dssp HHHHHHHHSCCHHHH----HHHHHTTSSCCSEECTTCCEEBCHHHH
T ss_pred HHHHHHHHCcCHHHH----HHHHHCCCCCCCeECCCCCeeeCHHHH
Confidence 566778888887654 5678899999887 5444455666553
No 362
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=28.79 E-value=40 Score=18.69 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=19.3
Q ss_pred CcccHHHHHhhcCCChHHHHHHHH
Q psy7778 45 KGIWMRDIRFKSNLMPTQLNKILK 68 (117)
Q Consensus 45 ~GIWtkdIk~ktnL~~~~l~K~LK 68 (117)
.|+-.+++-.++|++++.+++..+
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 578888888899999888877654
No 363
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=28.51 E-value=58 Score=28.56 Aligned_cols=65 Identities=15% Similarity=0.351 Sum_probs=44.3
Q ss_pred CCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHh--hcCCeeee---cccc-CCcccccCcc
Q psy7778 27 DSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE--TKKIIKAV---KSVA-NIEYLTEGTV 93 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE--~k~LIK~V---KsV~-gg~wYtdg~~ 93 (117)
..|+-+..|.-+..+ ...+-..+|...|||+...|.++|.+|. ..+++... +.|. ++.|.-+.+|
T Consensus 590 ~vs~~Qa~iLllFn~--~~~lt~~ei~~~t~i~~~~l~r~L~sL~~~k~~vL~~~p~~~~v~~~d~f~lN~~f 660 (759)
T 2hye_C 590 QVSLFQTLVLLMFNE--GDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFIFNGEF 660 (759)
T ss_dssp EEEHHHHHHHHHTTS--CCCEEHHHHHHHTCCCHHHHHHHHHTTTTTTTCSEEETTCSSSCCSSCEEEECCCC
T ss_pred EEcHHHHHHHHHhcC--CCCcCHHHHHHHHCcCHHHHHHHHHHHHccCCceeecCCCCCCCCCCCEEEeeccc
Confidence 356678777755544 4567779999999999999999999997 34555422 2332 4455444444
No 364
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=28.02 E-value=28 Score=24.41 Aligned_cols=44 Identities=7% Similarity=0.153 Sum_probs=32.5
Q ss_pred cccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec-cccCCcccccCcc
Q psy7778 46 GIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK-SVANIEYLTEGTV 93 (117)
Q Consensus 46 GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK-sV~gg~wYtdg~~ 93 (117)
..-+.++...+|++..+ |+..|..|||.++. +-+|--.|++..+
T Consensus 4 ~~tI~evA~~~Gvs~~t----LR~ye~~GLl~p~~r~~~g~R~Y~~~dl 48 (146)
T 3hh0_A 4 AWLISEFASVGDVTVRA----LRYYDKINLLKPSDYTEGGHRLYTKDDL 48 (146)
T ss_dssp CBCHHHHHHHHTCCHHH----HHHHHHTTSSCCSEECTTSCEEBCHHHH
T ss_pred CCcHHHHHHHHCcCHHH----HHHHHHCCCCCCCeECCCCCEeeCHHHH
Confidence 34567888889998854 56889999999984 5556666776654
No 365
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=27.83 E-value=99 Score=21.89 Aligned_cols=61 Identities=8% Similarity=0.151 Sum_probs=41.7
Q ss_pred HHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec--cccC-Cccc---ccCccccccchh
Q psy7778 37 KIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK--SVAN-IEYL---TEGTVNAMVLPS 100 (117)
Q Consensus 37 ~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK--sV~g-g~wY---tdg~~D~~fI~~ 100 (117)
-+|+. +.- --.+|-..||||..++..+|++|..-+..=.+. ++.+ --.| +=|-+|..-|..
T Consensus 27 ~lId~-~~~--nvp~L~~~TGmPRRTiQd~I~aL~elgI~~~FvQ~G~R~n~GyY~I~dWG~idk~Wv~~ 93 (117)
T 3ke2_A 27 HLMDD-ARH--NLLSLGKLTGMPRRTLQDAIASFADIGIEVEFVQDGERHNAGYYRIRTWGPISSAWMDT 93 (117)
T ss_dssp HHHHH-SCC--CHHHHHHHHCCCHHHHHHHHHTGGGGTCEEEEECCTTCCSCCEEEEEECTTBCHHHHHH
T ss_pred HHHhc-CCC--CHHHHHHHHCCCHhHHHHHHHHhhhCCeEEEEEeccccCCCccEEEeecCccCHHHHHH
Confidence 47777 444 778999999999999999999999766654433 3221 1233 235677766654
No 366
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=27.55 E-value=42 Score=22.56 Aligned_cols=41 Identities=5% Similarity=0.045 Sum_probs=31.6
Q ss_pred cccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHH
Q psy7778 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKIL 67 (117)
Q Consensus 24 k~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~L 67 (117)
.+..||+.++.|+.+-.- .|.-.++|-..+|++..+|.+.+
T Consensus 132 ~l~~L~~~~r~vl~l~~~---~g~s~~eIA~~lgis~~tV~~~l 172 (184)
T 2q1z_A 132 AIARLPEAQRALIERAFF---GDLTHRELAAETGLPLGTIKSRI 172 (184)
T ss_dssp HHHTSCHHHHHHHHHHHH---SCCSSCCSTTTCCCCCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHH---cCCCHHHHHHHHCcCHHHHHHHH
Confidence 577899988888766443 57888999999999988755444
No 367
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=27.19 E-value=91 Score=18.41 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=24.6
Q ss_pred HHHHHHHhc-CCcccHHHHHhhcCCChHHHHHHHH
Q psy7778 35 VYKIIEEAG-NKGIWMRDIRFKSNLMPTQLNKILK 68 (117)
Q Consensus 35 VY~~Ie~AG-n~GIWtkdIk~ktnL~~~~l~K~LK 68 (117)
+...|+..- ..|+-..++-.++|++++.+++..+
T Consensus 13 l~~~l~~~r~~~gltq~~lA~~~gvs~~~is~~e~ 47 (80)
T 3kz3_A 13 LKAIWEKKKNELGLSYESVADKMGMGQSAVAALFN 47 (80)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 444554432 4688888999999999988887654
No 368
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=27.07 E-value=13 Score=27.05 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=0.0
Q ss_pred HhhcCCChHHHHHHHHHHhhc
Q psy7778 53 RFKSNLMPTQLNKILKQLETK 73 (117)
Q Consensus 53 k~ktnL~~~~l~K~LK~LE~k 73 (117)
-.+.++.|+.|++.|+.||..
T Consensus 22 A~~L~isq~avS~~I~~LE~~ 42 (312)
T 2h9b_A 22 ADKLCIAQPPLSRQIQNLEEE 42 (312)
T ss_dssp ---------------------
T ss_pred HHHhcCCccHHHHHHHHHHHH
Confidence 567899999999999999985
No 369
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=26.24 E-value=1e+02 Score=23.72 Aligned_cols=50 Identities=4% Similarity=0.036 Sum_probs=43.5
Q ss_pred ccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCe
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKII 76 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LI 76 (117)
..+|+.++..|..+++. .-.+-..+|....|.+......+|..|+..|+.
T Consensus 162 p~el~~D~~~vLe~a~~--~g~vt~~~L~~~lgW~~~Ra~~~L~~l~~~G~l 211 (233)
T 1u5t_A 162 PNELTSDQTKILEICSI--LGYSSISLLKANLGWEAVRSKSALDEMVANGLL 211 (233)
T ss_dssp SSCCCTTHHHHHHTTTT--TSCCBHHHHHHHHCCCSHHHHHHHHHHHHTTSS
T ss_pred CCccchHHHHHHHHHHh--cCcCcHHHHHHHhCCCHHHHHHHHHHHHHCCCE
Confidence 34588899999988764 457999999999999999999999999999886
No 370
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=25.93 E-value=42 Score=24.58 Aligned_cols=56 Identities=16% Similarity=0.119 Sum_probs=38.9
Q ss_pred ccccCCCHHHH--------HHHHHHHHhcCCcccHHHHHhhcC--------------CChHHHHHHHHHHhhcCCeeeec
Q psy7778 23 EKLKDSDNEEK--------VVYKIIEEAGNKGIWMRDIRFKSN--------------LMPTQLNKILKQLETKKIIKAVK 80 (117)
Q Consensus 23 ~k~~~L~~eE~--------lVY~~Ie~AGn~GIWtkdIk~ktn--------------L~~~~l~K~LK~LE~k~LIK~VK 80 (117)
.+.+.|+|++- .|.-.|.--|.-|+ ..+++..| =.-+++.++|.+||.-++|...+
T Consensus 43 g~~KEl~P~d~DW~Y~RaASi~R~lYlrg~vGV--~~lrk~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~g~Vek~~ 120 (146)
T 3iz6_S 43 ARFKELPPYDPDWYYTRAASIARKIYLRQGIGV--GGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDP 120 (146)
T ss_dssp SSSCSSSTHHHHTHHHHHHHHHHHHHHHCSBCH--HHHHSSSCCCCCCCSSCCCCCCCCHHHHHHHHHHHHHHTSEEEET
T ss_pred cccccCCCCCCchHHHHHHHHHHHHHhcCCCcH--HHHHHHHCCCCCCCCCCCcccCCCcHHHHHHHHHHHHCCCeEecC
Confidence 46788888552 24445555566665 55665543 34478999999999999998775
No 371
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=25.86 E-value=58 Score=26.34 Aligned_cols=55 Identities=9% Similarity=0.115 Sum_probs=43.7
Q ss_pred cccCCCHHHHHHHHHHHHh-cCCcccHHHHHhhcCCChHHHHHHHHHHhhcCCeee
Q psy7778 24 KLKDSDNEEKVVYKIIEEA-GNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKA 78 (117)
Q Consensus 24 k~~~L~~eE~lVY~~Ie~A-Gn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~ 78 (117)
.+..|+++++.++..+.-- ++..|-...+..-.+.+...+..+|..|+.++||..
T Consensus 371 s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~ 426 (591)
T 1z6t_A 371 SVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFC 426 (591)
T ss_dssp HHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEE
T ss_pred HHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEE
Confidence 4678999888887776543 345687777777788888889999999999999984
No 372
>3r9p_A ACKA; ssgcid, seattle structural genomics center for infectious DI acetate kinase, transferase; HET: PGE; 1.90A {Mycobacterium avium subsp} PDB: 3p4i_A 4dq8_A
Probab=25.67 E-value=38 Score=28.26 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=35.4
Q ss_pred ChHHHHHHHHHHhhcCCee------ee--ccccCCcccccCc-cccccchhhhhh
Q psy7778 59 MPTQLNKILKQLETKKIIK------AV--KSVANIEYLTEGT-VNAMVLPSRKKR 104 (117)
Q Consensus 59 ~~~~l~K~LK~LE~k~LIK------~V--KsV~gg~wYtdg~-~D~~fI~~l~~~ 104 (117)
|...+..+++.|...+.+. .| .-|+||.+|++.. .|.+.++.|+.-
T Consensus 55 h~~a~~~il~~L~~~~~~~~~~~i~aVGhRvVhGG~~f~~~~~I~~~vl~~l~~~ 109 (391)
T 3r9p_A 55 HDAALRRAFDMLAGDGVDLNTAGLVAVGHRVVHGGNTFYRPTVLDDAVIARLHEL 109 (391)
T ss_dssp HHHHHHHHHHHHHHTTCCTTTTTEEEEEEEESCCTTTCCSCEECCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCCCcccceeEEecCCCCCCCCCCCCEECcHHHHHHHHhc
Confidence 4567999999998877543 23 3467999999988 899999888763
No 373
>3hi2_B Motility quorum-sensing regulator MQSR; toxin-antitoxin system, Zn-binding protein, MQSA, YGIU B3022, B3021, stress response; 2.00A {Escherichia coli k-12}
Probab=25.52 E-value=46 Score=22.92 Aligned_cols=52 Identities=10% Similarity=0.115 Sum_probs=39.2
Q ss_pred HHHHHhcCCcccHHHHH--hhcCCChHHHHHHHHHHhhcCCeeeecccc-CCcccc
Q psy7778 37 KIIEEAGNKGIWMRDIR--FKSNLMPTQLNKILKQLETKKIIKAVKSVA-NIEYLT 89 (117)
Q Consensus 37 ~~Ie~AGn~GIWtkdIk--~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~-gg~wYt 89 (117)
.+|+. |+-.+-...++ ...|+....+-.++.+|+...+-||+.+.. ++.|.+
T Consensus 18 ~l~~~-g~~~~T~sA~~ga~~LG~~~~~m~~vI~~L~~~~FyKSMTt~~dh~~WQD 72 (101)
T 3hi2_B 18 KLVNA-GQVRTTRSALLNADELGLDFDGMCNVIIGLSESDFYKSMTTYSDHTIWQD 72 (101)
T ss_dssp HHHHT-TCEEEEHHHHHHHHHTTCCHHHHHHHHHTCCGGGEEEEECCSTTTTCCEE
T ss_pred HHHHc-CChHHHHHHHhhHHHhCCCHHHHHHHHHhcCHHHcccccCccCCCCccee
Confidence 34444 77777333333 258899999999999999999999998875 777853
No 374
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=25.12 E-value=15 Score=27.06 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=0.0
Q ss_pred HhhcCCChHHHHHHHHHHhhc
Q psy7778 53 RFKSNLMPTQLNKILKQLETK 73 (117)
Q Consensus 53 k~ktnL~~~~l~K~LK~LE~k 73 (117)
-.+.++.|+.|++.|+.||..
T Consensus 22 A~~L~isq~avS~~I~~LE~~ 42 (313)
T 2h98_A 22 AEKLCIAQPPLSRQIQKLEEE 42 (313)
T ss_dssp ---------------------
T ss_pred HHHhCCCccHHHHHHHHHHHH
Confidence 567899999999999999984
No 375
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=24.92 E-value=74 Score=26.79 Aligned_cols=56 Identities=11% Similarity=0.231 Sum_probs=41.4
Q ss_pred ccCCCHHHHHH---HHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhh-cCCeeeecccc
Q psy7778 25 LKDSDNEEKVV---YKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLET-KKIIKAVKSVA 83 (117)
Q Consensus 25 ~~~L~~eE~lV---Y~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~-k~LIK~VKsV~ 83 (117)
+.+||++|+.= -.+|-. +|==.+.|-+-+|.+...|++.||+.++ ++.+|.++++.
T Consensus 379 i~smt~~Er~~~~~p~~~~~---~~sr~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~~~~ 438 (504)
T 2j37_W 379 MDSMNDQELDSTDGAKVFSK---QPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIK 438 (504)
T ss_dssp HTTSCHHHHHCTTHHHHHHH---CTHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCCCCCSCTT
T ss_pred HHhCCHHHhcCCCCCcccCC---ChHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44566655544 344421 3445678888899999999999999987 89999998765
No 376
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=24.88 E-value=1.3e+02 Score=18.79 Aligned_cols=39 Identities=13% Similarity=0.174 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhh
Q psy7778 34 VVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLET 72 (117)
Q Consensus 34 lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~ 72 (117)
.+..+|++--+..+-..+|-...||+...+.+.+|..-.
T Consensus 9 ~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~G 47 (108)
T 3oou_A 9 NVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKEMG 47 (108)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHC
Confidence 466778877777888899999999999999998887633
No 377
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=24.86 E-value=58 Score=19.79 Aligned_cols=20 Identities=10% Similarity=0.187 Sum_probs=16.7
Q ss_pred HHHHHhhcCCChHHHHHHHH
Q psy7778 49 MRDIRFKSNLMPTQLNKILK 68 (117)
Q Consensus 49 tkdIk~ktnL~~~~l~K~LK 68 (117)
.+||-.++|+..++|+++|.
T Consensus 3 ~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 57888888888888888885
No 378
>4asn_A TUBR; transcription, tubulin, FTSZ, segregation, partition; 3.50A {Bacillus megaterium}
Probab=24.73 E-value=1.7e+02 Score=19.94 Aligned_cols=59 Identities=17% Similarity=0.164 Sum_probs=50.3
Q ss_pred ccCCCHHHHHHHHHHHHhcC----CcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeecccc
Q psy7778 25 LKDSDNEEKVVYKIIEEAGN----KGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSVA 83 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn----~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VKsV~ 83 (117)
.+.|+-++.-|.....+.|. +.|-.-.|+...--....+.|.|-.||.-.+|+-|.+-+
T Consensus 9 ~~~L~~~D~SIL~~L~~~~A~~~~KAI~K~~I~D~iE~~TA~~RKsL~rLEAi~FI~~V~G~r 71 (101)
T 4asn_A 9 MRKLTIEDVSILGWLFQNEANAVFKAIKKSSIADELEYSTANFRKTLNKLEAIHFIGTVTGGK 71 (101)
T ss_dssp HHTCCHHHHHHHHHHHHTTCCSGGGCEEHHHHHTTSCCCSHHHHHHHHHHHHTTCEEEECSSS
T ss_pred HHhCChhHHHHHHHHHhcCccceeeeecHhhHHHHHHHhHHHHHHHHHHHHHHHHhhhcccCc
Confidence 46788889889988888776 567778888888888899999999999999999998765
No 379
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=24.28 E-value=16 Score=26.83 Aligned_cols=21 Identities=14% Similarity=0.072 Sum_probs=0.0
Q ss_pred HhhcCCChHHHHHHHHHHhhc
Q psy7778 53 RFKSNLMPTQLNKILKQLETK 73 (117)
Q Consensus 53 k~ktnL~~~~l~K~LK~LE~k 73 (117)
-.+.++.|+.|++.|+.||..
T Consensus 23 A~~L~isq~avS~~I~~LE~~ 43 (324)
T 1al3_A 23 AEGLYTSQPGISKQVRMLEDE 43 (324)
T ss_dssp ---------------------
T ss_pred HHHhCCCchHHHHHHHHHHHH
Confidence 467899999999999999984
No 380
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=23.89 E-value=16 Score=26.65 Aligned_cols=44 Identities=23% Similarity=0.166 Sum_probs=0.0
Q ss_pred cCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhhc
Q psy7778 26 KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK 73 (117)
Q Consensus 26 ~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~k 73 (117)
+.|+-.+..++..|-+.|+- - .=-.+.++.|+.|++.|+.||..
T Consensus 12 ~~m~l~~L~~f~~v~~~gs~--t--~AA~~L~isq~avS~~I~~LE~~ 55 (315)
T 1uth_A 12 RDIDLNLLVVFNQLLLDRSV--S--TAGEKLGLTQPAVSNSLKRLRTA 55 (315)
T ss_dssp ------------------------------------------------
T ss_pred ccCCHHHHHHHHHHHHcCCH--H--HHHHHhCCCHHHHHHHHHHHHHH
Confidence 34555555666666666642 1 22567899999999999999985
No 381
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=23.60 E-value=39 Score=23.17 Aligned_cols=41 Identities=15% Similarity=0.232 Sum_probs=29.0
Q ss_pred HHHHHhhcCCChHHHHHHHHHHhhcCCeeee-ccccCCcccccCcc
Q psy7778 49 MRDIRFKSNLMPTQLNKILKQLETKKIIKAV-KSVANIEYLTEGTV 93 (117)
Q Consensus 49 tkdIk~ktnL~~~~l~K~LK~LE~k~LIK~V-KsV~gg~wYtdg~~ 93 (117)
+.++...+|++..+ |+..|..|||.+. .+-+|=-.|++..+
T Consensus 3 I~e~A~~~gvs~~t----LR~ye~~Gll~p~~r~~~g~R~Y~~~dl 44 (135)
T 1q06_A 3 ISDVAKITGLTSKA----IRFYEEKGLVTPPMRSENGYRTYTQQHL 44 (135)
T ss_dssp HHHHHHHHTCCHHH----HHHHHHTTCSCCCEECTTSCEECCHHHH
T ss_pred HHHHHHHHCcCHHH----HHHHHHCCCCCCCccCCCCCeeeCHHHH
Confidence 56777888888754 5678999999987 45444456776653
No 382
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=23.53 E-value=1.1e+02 Score=19.59 Aligned_cols=30 Identities=13% Similarity=0.147 Sum_probs=24.5
Q ss_pred HHhhcCCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 52 IRFKSNLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 52 Ik~ktnL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
++.+.....+.+.+|+..|-.+.+|..-.+
T Consensus 39 l~~rF~p~~~~IKk~IE~LIereYl~R~~~ 68 (77)
T 3tdu_C 39 LSSRFKPRVPVIKKCIDILIEKEYLERVDG 68 (77)
T ss_dssp HTTTCCCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HhCcCCCCHHHHHHHHHHHHhhhHhhcCCC
Confidence 445677788899999999999999987643
No 383
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=23.16 E-value=48 Score=25.23 Aligned_cols=46 Identities=9% Similarity=0.167 Sum_probs=34.6
Q ss_pred CcccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec-cccCCcccccCccc
Q psy7778 45 KGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK-SVANIEYLTEGTVN 94 (117)
Q Consensus 45 ~GIWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK-sV~gg~wYtdg~~D 94 (117)
...-+.++...+|++.. .|+..|..|||++.. +-+|--.|++..+.
T Consensus 2 ~~~tI~evA~~~gvs~~----TLRyYe~~GLL~p~~~~~~GyR~Y~~~dl~ 48 (249)
T 3qao_A 2 NAMQIKELAELTGVSVR----TLHHYDKIGLLVPQKDDWNGYRIYSEKDVD 48 (249)
T ss_dssp CCBCHHHHHHHHCCCHH----HHHHHHHTTSSCCEECTTTCCEEBCHHHHH
T ss_pred CCCCHHHHHHHHCcCHH----HHHHHHHCCCCCCceECCCCCeeeCHHHHH
Confidence 34567888899999985 456889999999998 65555677776543
No 384
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=23.06 E-value=88 Score=20.55 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCcccHHHHHhhcCC-ChHHHHHHHHHHhhc
Q psy7778 34 VVYKIIEEAGNKGIWMRDIRFKSNL-MPTQLNKILKQLETK 73 (117)
Q Consensus 34 lVY~~Ie~AGn~GIWtkdIk~ktnL-~~~~l~K~LK~LE~k 73 (117)
.||+++.+. ..+-.++|++.|++ .+..+.-+|==|-..
T Consensus 14 ~VW~~L~~~--~~~s~~el~k~t~l~~d~el~lAiGWLaRE 52 (77)
T 2l01_A 14 QIWEALNGT--EGLTQKQIKKATKLKADKDFFLGLGWLLRE 52 (77)
T ss_dssp HHHHHHTTS--SCEEHHHHHHHHTCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcC--CCCCHHHHHHHHCCCCHHHHHHHHHHHhhc
Confidence 689998874 46778999999999 999998888777443
No 385
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=22.98 E-value=44 Score=23.24 Aligned_cols=44 Identities=9% Similarity=0.222 Sum_probs=31.8
Q ss_pred ccHHHHHhhcCCChHHHHHHHHHHhhcCCeeee-ccccCCcccccCccc
Q psy7778 47 IWMRDIRFKSNLMPTQLNKILKQLETKKIIKAV-KSVANIEYLTEGTVN 94 (117)
Q Consensus 47 IWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~V-KsV~gg~wYtdg~~D 94 (117)
+-+.++...+|++..+ |+..|..|||.++ .+-+|--.|++..+.
T Consensus 3 ~~I~e~A~~~gvs~~t----LR~Ye~~GLl~p~~r~~~g~R~Y~~~dl~ 47 (142)
T 3gp4_A 3 LNIKEASEKSGVSADT----IRYYERIGLIPPIHRNESGVRKFGAEDLR 47 (142)
T ss_dssp BCHHHHHHHHTSCHHH----HHHHHHHTSSCCCCBCTTSCBCBCHHHHH
T ss_pred CcHHHHHHHHCcCHHH----HHHHHHCCCCCCCcCCCCCCeeeCHHHHH
Confidence 4567888889998855 5678999999994 454566677766543
No 386
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=22.89 E-value=75 Score=20.47 Aligned_cols=56 Identities=21% Similarity=0.199 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHhcC-CcccHHHHHhh--cC---C----ChHHHHHHHHHHhhcCCeeeeccc
Q psy7778 27 DSDNEEKVVYKIIEEAGN-KGIWMRDIRFK--SN---L----MPTQLNKILKQLETKKIIKAVKSV 82 (117)
Q Consensus 27 ~L~~eE~lVY~~Ie~AGn-~GIWtkdIk~k--tn---L----~~~~l~K~LK~LE~k~LIK~VKsV 82 (117)
.-++-..||...|..-.. .|-....|++- .+ + ....|+++||.+..+|.+..+|+.
T Consensus 8 ~hp~y~~MI~eAI~~Lker~GsS~~AI~KyI~~~y~~~~~~~~~~~lk~aLk~~v~~G~l~q~Kg~ 73 (88)
T 2rqp_A 8 PRPKMDAILTEAIKACFQKSGASVVAIRKYIIHKYPSLELERRGYLLKQALKRELNRGVIKQVKGK 73 (88)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHCSTHHHHTTTTTHHHHHHHHHHHHTTCCSSCS
T ss_pred CCCCHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHhcCcEEeecCC
Confidence 344555677777776655 67777777651 22 1 234699999999999888888864
No 387
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=22.88 E-value=58 Score=21.96 Aligned_cols=46 Identities=11% Similarity=0.200 Sum_probs=35.7
Q ss_pred ccccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHH----HHHHHHHh
Q psy7778 23 EKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQL----NKILKQLE 71 (117)
Q Consensus 23 ~k~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l----~K~LK~LE 71 (117)
..+..||+.++.|+.+ .--.|.-.++|-..+|++.++| .++++.|.
T Consensus 89 ~~l~~Lp~~~r~vl~L---~~~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr 138 (157)
T 2lfw_A 89 ARLARMTPLSRQALLL---TAMEGFSPEDAAYLIEVDTSEVETLVTEALAEIE 138 (157)
T ss_dssp TTTTTSCTTHHHHHTT---TSSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHH---HHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4578899999987754 3357899999999999998875 55556664
No 388
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=22.81 E-value=69 Score=21.05 Aligned_cols=35 Identities=11% Similarity=0.326 Sum_probs=28.7
Q ss_pred HHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhh
Q psy7778 36 YKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLET 72 (117)
Q Consensus 36 Y~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~ 72 (117)
-.+|++ +..++..+|-...|+....+++..|..-.
T Consensus 85 ~~~i~~--~~~~sl~~lA~~~g~S~~~f~r~Fk~~~G 119 (133)
T 1u8b_A 85 CRLLEQ--ETPVTLEALADQVAMSPFHLHRLFKATTG 119 (133)
T ss_dssp HHHTCS--SSCCCHHHHHHHHTSCHHHHHHHHHHHTS
T ss_pred HHHHHh--cCCCCHHHHHHHHCcCHHHHHHHHHHHHC
Confidence 334444 78899999999999999999999987643
No 389
>4h0o_A Acetate kinase; askha (acetate and S kinase, HSC70, actin) superfamily, ribonuclease H-like fold transferase; 2.40A {Entamoeba histolytica}
Probab=22.70 E-value=49 Score=27.82 Aligned_cols=46 Identities=24% Similarity=0.357 Sum_probs=35.0
Q ss_pred ChHHHHHHHHHHhhcCC-eeee--ccccCCcccccCc-cccccchhhhhh
Q psy7778 59 MPTQLNKILKQLETKKI-IKAV--KSVANIEYLTEGT-VNAMVLPSRKKR 104 (117)
Q Consensus 59 ~~~~l~K~LK~LE~k~L-IK~V--KsV~gg~wYtdg~-~D~~fI~~l~~~ 104 (117)
|...+..+|+.|+..++ |..| .-|+||..|++.. .|.+.++.|+.-
T Consensus 73 h~~A~~~il~~L~~~~~~i~aVGHRvVhGG~~f~~~v~Id~~vl~~l~~~ 122 (404)
T 4h0o_A 73 HPQAAKLIIQFLKENHISIAFVGHRFVHGGSYFKKSAVIDEVVLKELKEC 122 (404)
T ss_dssp HHHHHHHHHHHHHHTTCCCSEEEEEESCCTTTCSSCEECCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEcCccCCCCCCCCCEEcCHHHHHHHHhc
Confidence 45679999999988775 2222 3357999999998 899999988764
No 390
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=22.57 E-value=19 Score=23.06 Aligned_cols=48 Identities=23% Similarity=0.377 Sum_probs=35.2
Q ss_pred ccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhh-cCCee
Q psy7778 25 LKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLET-KKIIK 77 (117)
Q Consensus 25 ~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~-k~LIK 77 (117)
+.+||++|+.=-.+|.. ==.+-|-.-+|.+...|++.||+.++ ++.+|
T Consensus 19 I~SMT~~Er~nP~ii~~-----SR~~RIA~GSG~~v~eVn~Llkqf~~m~kmmk 67 (69)
T 1dul_A 19 INSMTMKERAKPEIIKG-----SRKRRIAAGSGMQVQDVNRLLKQFDDMQRMMK 67 (69)
T ss_dssp HHTSCHHHHHCGGGCCH-----HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHhCccccCH-----HHHHHHHccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 56889988875555532 23566777799999999999999976 44443
No 391
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=22.37 E-value=1.2e+02 Score=19.79 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=32.4
Q ss_pred cCCcccHHHHHhhc--CCChHHHHHHHHHHhhcCCeeee
Q psy7778 43 GNKGIWMRDIRFKS--NLMPTQLNKILKQLETKKIIKAV 79 (117)
Q Consensus 43 Gn~GIWtkdIk~kt--nL~~~~l~K~LK~LE~k~LIK~V 79 (117)
-..||=...||.+. +++...+..+|..|+..|.|+.-
T Consensus 84 ~~~G~~keeLr~~~~~~~~~~~~~~ll~~l~~~g~l~~~ 122 (135)
T 2v9v_A 84 LRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQLA 122 (135)
T ss_dssp TSSCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred CccCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCEEec
Confidence 34899999999995 58999999999999999998764
No 392
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=22.30 E-value=1.4e+02 Score=22.19 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=32.2
Q ss_pred cCCCH-HHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHH
Q psy7778 26 KDSDN-EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQL 70 (117)
Q Consensus 26 ~~L~~-eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~L 70 (117)
.+|++ |+...|..+- ..|.-..+|..++|+..+.|.+.++-+
T Consensus 116 ~~L~~~E~a~~~~~l~---~~g~t~~~iA~~lG~s~~~V~~~l~l~ 158 (230)
T 1vz0_A 116 EDLSPVEEARGYQALL---EMGLTQEEVARRVGKARSTVANALRLL 158 (230)
T ss_dssp TTCCHHHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 47887 4445555544 357777899999999999999999877
No 393
>2jqe_A SRP54, signal recognition 54 kDa protein; AF54, structure, solution, signaling protein; NMR {Archaeoglobus fulgidus}
Probab=22.17 E-value=16 Score=25.62 Aligned_cols=52 Identities=27% Similarity=0.408 Sum_probs=39.1
Q ss_pred cccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHhh-cCCeeeec
Q psy7778 24 KLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLET-KKIIKAVK 80 (117)
Q Consensus 24 k~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE~-k~LIK~VK 80 (117)
-+.++|++|+.=-.+|. +==.+-|-.-+|.+...|++.||+.++ ++..|.++
T Consensus 61 II~SMT~~Er~~P~ii~-----~SR~~RIA~GSG~~v~eVn~LLkqf~~m~kmmk~m~ 113 (119)
T 2jqe_A 61 IMDSMTEEELLNPKIID-----SSRIRRIAIGSGTSPQEVKELLNYYKTMKNLMKKMK 113 (119)
T ss_dssp HHHHSCHHHHHCGGGCC-----HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHhCCHHHHhChhhcC-----HHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 35678888876555552 223566777799999999999999987 77877765
No 394
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=22.13 E-value=1.5e+02 Score=18.73 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=31.9
Q ss_pred HHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHHHh
Q psy7778 34 VVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71 (117)
Q Consensus 34 lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~LE 71 (117)
.+..+|++.=+..+-..+|-...||....+.+.+|...
T Consensus 11 ~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~~ 48 (113)
T 3oio_A 11 EAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYL 48 (113)
T ss_dssp HHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHT
T ss_pred HHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 56678888777778889999999999999999988763
No 395
>4b1v_M Phosphatase and actin regulator 1; structural protein, nucleotide-binding, transcription regula transcription, muscle protein, ATP-binding; HET: ATP LAB; 1.75A {Mus musculus}
Probab=22.07 E-value=20 Score=20.13 Aligned_cols=20 Identities=40% Similarity=0.702 Sum_probs=15.3
Q ss_pred chhhhhhhhhhhcccccccC
Q psy7778 98 LPSRKKREERQDRGVLLKLF 117 (117)
Q Consensus 98 I~~l~~~~~~~~~~~~~~~~ 117 (117)
|...|.|||--.||||..++
T Consensus 12 is~rqsreelikrgvlke~~ 31 (32)
T 4b1v_M 12 ISMRQSREELIKRGVLKEIY 31 (32)
T ss_dssp HHTCCCHHHHHHTTSCCCC-
T ss_pred HHhcccHHHHHHhhhhhhcC
Confidence 56677899999999987653
No 396
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=21.51 E-value=1.5e+02 Score=19.41 Aligned_cols=33 Identities=21% Similarity=0.116 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHH
Q psy7778 34 VVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ 69 (117)
Q Consensus 34 lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~ 69 (117)
.|..++...+ +-.+||-...|...++|++.|..
T Consensus 11 ~I~~~l~~~~---~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 11 KIGKYIVETK---KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HHHHHHHHHC---CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHcC---CCHHHHHHHHCCCHHHHHHHHcC
Confidence 5667777655 88999999999999999999964
No 397
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=21.18 E-value=65 Score=22.21 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=25.7
Q ss_pred hhcCCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 54 FKSNLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 54 ~ktnL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
.+.+|.-..++|+|+..-.++.|..|++
T Consensus 57 nkp~M~YeKlSRaLRyYY~kgii~Kv~G 84 (106)
T 4avp_A 57 NRPAMNYDKLSRSLRYYYEKGIMQKVAG 84 (106)
T ss_dssp TCTTCCHHHHHHHHHHHHHHTSEEECTT
T ss_pred CCCCcCHHHHHHHHHHHHhcCeEEecCC
Confidence 6788999999999999999999999875
No 398
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=21.06 E-value=74 Score=21.48 Aligned_cols=29 Identities=31% Similarity=0.398 Sum_probs=25.8
Q ss_pred HhhcCCChHHHHHHHHHHhhcCCeeeecc
Q psy7778 53 RFKSNLMPTQLNKILKQLETKKIIKAVKS 81 (117)
Q Consensus 53 k~ktnL~~~~l~K~LK~LE~k~LIK~VKs 81 (117)
|.+.+|.-..++|+|+..-.+++|+.|.+
T Consensus 49 Knk~~MnYeklSRaLRyYY~~~il~Kv~g 77 (93)
T 1bc8_C 49 KNKPNMNYDKLSRALRYYYVKNIIKKVNG 77 (93)
T ss_dssp HTCTTCCHHHHHHHHHHHHHHTSEEECTT
T ss_pred CCCCCcCHHHHHHHHHHHHhcCcEEecCC
Confidence 46788999999999999999999999863
No 399
>2ip6_A PAPB, PEDB; immunity protein to the pediocin PP-1, antimicrobial protein; 1.35A {Pediococcus pentosaceus}
Probab=20.56 E-value=66 Score=22.67 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHHHH-hcCCccc
Q psy7778 28 SDNEEKVVYKIIEE-AGNKGIW 48 (117)
Q Consensus 28 L~~eE~lVY~~Ie~-AGn~GIW 48 (117)
|++||..++..|+. |+.+|+|
T Consensus 76 l~~eE~~~L~~I~~ia~S~~~W 97 (112)
T 2ip6_A 76 FTAEENKVLAAINELAHSQKGW 97 (112)
T ss_dssp CCHHHHHHHHHHHHHTTC----
T ss_pred CCHHHHHHHHHHHHHhcccccc
Confidence 78888888887765 7778999
No 400
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=20.53 E-value=71 Score=17.94 Aligned_cols=24 Identities=8% Similarity=0.066 Sum_probs=20.0
Q ss_pred CcccHHHHHhhcCCChHHHHHHHH
Q psy7778 45 KGIWMRDIRFKSNLMPTQLNKILK 68 (117)
Q Consensus 45 ~GIWtkdIk~ktnL~~~~l~K~LK 68 (117)
.|+-.+++-.++|++++.+++..+
T Consensus 15 ~glsq~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 15 LKMTQTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 578889999999999988887654
No 401
>3anw_A GINS51, putative uncharacterized protein; SLD5 superfamily, DNA replication, replication; 2.65A {Thermococcus kodakarensis}
Probab=20.49 E-value=63 Score=23.72 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=18.0
Q ss_pred cccCCCHHHHHHHHHHHHhcCC
Q psy7778 24 KLKDSDNEEKVVYKIIEEAGNK 45 (117)
Q Consensus 24 k~~~L~~eE~lVY~~Ie~AGn~ 45 (117)
-..+|+++|+.+|..|..+=+.
T Consensus 86 ~~~~Lt~EEk~l~~~l~~~i~~ 107 (188)
T 3anw_A 86 KIAEMTAEEKRLFNVIRAFIER 107 (188)
T ss_dssp EECCCCHHHHHHHHHHHHHHTT
T ss_pred hhhhCCHHHHHHHHHHHHHHHh
Confidence 3679999999999999875543
No 402
>4ijn_A Acetate kinase, acetokinase; proprionate kinase, ATP-dependent, metabolic intermediate biosynthesis, acetyl-COA biosynthesis, hydrolysis; HET: AMP; 1.70A {Mycobacterium smegmatis}
Probab=20.42 E-value=54 Score=27.40 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=35.0
Q ss_pred ChHHHHHHHHHHhhcCCee---e---e--ccccCCcccccCc-cccccchhhhhh
Q psy7778 59 MPTQLNKILKQLETKKIIK---A---V--KSVANIEYLTEGT-VNAMVLPSRKKR 104 (117)
Q Consensus 59 ~~~~l~K~LK~LE~k~LIK---~---V--KsV~gg~wYtdg~-~D~~fI~~l~~~ 104 (117)
|...+..+++.|+..+.+. + | .-|+||.+|++.. .|.+.++.|+.-
T Consensus 64 h~~a~~~il~~L~~~~~~~~~~~i~aVGhRvVhGG~~f~~~~~I~~~vl~~l~~~ 118 (398)
T 4ijn_A 64 HDAALRAAFDELAAAGLHLEDLDLKAVGHRMVHGGKTFYKPSVVDDELIAKAREL 118 (398)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGSCEEEEEEEESCCTTTCCSCEECCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCccccceeEEecCCCCCCcCCCCCeEeCHHHHHHHHhc
Confidence 3457888999998877654 2 2 3457999999988 899999988763
No 403
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=20.25 E-value=82 Score=23.05 Aligned_cols=51 Identities=12% Similarity=0.149 Sum_probs=35.2
Q ss_pred ccHHHHHhhcCCChHHHHHHHHHHhhcCCeeeec--cccCCcccccCcccc-ccchhh
Q psy7778 47 IWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVK--SVANIEYLTEGTVNA-MVLPSR 101 (117)
Q Consensus 47 IWtkdIk~ktnL~~~~l~K~LK~LE~k~LIK~VK--sV~gg~wYtdg~~D~-~fI~~l 101 (117)
.-+.++.+.+|++.. .|+..|..||+++.. +-+|=-.|++..+.. .+|-.+
T Consensus 6 ~~i~e~a~~~gvs~~----tlr~y~~~gll~p~~~d~~~g~R~y~~~~~~~l~~i~~l 59 (278)
T 1r8e_A 6 YSIGEVSKLANVSIK----ALRYYDKIDLFKPAYVDPDTSYRYYTDSQLIHLDLIKSL 59 (278)
T ss_dssp EEHHHHHHHHTCCHH----HHHHHHHTTSSCCSEECTTTCCEEEETGGGGHHHHHHHH
T ss_pred EeHHHHHHHHCcCHH----HHHHHHHCCCCCCCccCCCCCccccCHHHHHHHHHHHHH
Confidence 446778888898875 456789999999876 345556788776543 344433
No 404
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=20.19 E-value=73 Score=17.77 Aligned_cols=24 Identities=8% Similarity=0.156 Sum_probs=19.6
Q ss_pred CcccHHHHHhhcCCChHHHHHHHH
Q psy7778 45 KGIWMRDIRFKSNLMPTQLNKILK 68 (117)
Q Consensus 45 ~GIWtkdIk~ktnL~~~~l~K~LK 68 (117)
.|+-.+++-.++|++++.|++..+
T Consensus 13 ~glsq~~lA~~~gis~~~i~~~e~ 36 (69)
T 1r69_A 13 LGLNQAELAQKVGTTQQSIEQLEN 36 (69)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHc
Confidence 578888999999999988887654
No 405
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=20.04 E-value=1.8e+02 Score=18.55 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHHH
Q psy7778 33 KVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQ 69 (117)
Q Consensus 33 ~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK~ 69 (117)
..|..+|++--...+-..+|-...|+....+.+.+|.
T Consensus 10 ~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 10 TRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp HHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3567788877777888999999999999999999887
No 406
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=20.02 E-value=22 Score=24.73 Aligned_cols=43 Identities=12% Similarity=0.219 Sum_probs=0.0
Q ss_pred ccccCCCHHHHHHHHHHHHhcCCcccHHHHHhhcCCChHHHHHHHH
Q psy7778 23 EKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68 (117)
Q Consensus 23 ~k~~~L~~eE~lVY~~Ie~AGn~GIWtkdIk~ktnL~~~~l~K~LK 68 (117)
+-+..||+.++.|+.+-.- .|.-.++|-..+|++..+|.+.+.
T Consensus 194 ~~l~~L~~~~r~vl~l~~~---~g~s~~EIA~~lgis~~tV~~~~~ 236 (243)
T 1l0o_C 194 KAIEELDERERLIVYLRYY---KDQTQSEVASRLGISQVQMSRLEK 236 (243)
T ss_dssp ----------------------------------------------
T ss_pred HHHHhCCHHHHHHHHHHHh---cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4577899999888776443 678899999999999998776654
Done!