Your job contains 1 sequence.
>psy7778
MLANGFLIGGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMP
TQLNKILKQLETKKIIKAVKSVANIEYLTEGTVNAMVLPSRKKREERQDRGVLLKLF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy7778
(117 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0038951 - symbol:CG5380 species:7227 "Drosophila m... 258 3.4e-22 1
UNIPROTKB|F1MYX7 - symbol:POLR3F "DNA-directed RNA polyme... 258 3.4e-22 1
UNIPROTKB|Q2T9S3 - symbol:POLR3F "DNA-directed RNA polyme... 258 3.4e-22 1
UNIPROTKB|E2RG78 - symbol:POLR3F "Uncharacterized protein... 258 3.4e-22 1
UNIPROTKB|Q9H1D9 - symbol:POLR3F "DNA-directed RNA polyme... 258 3.4e-22 1
UNIPROTKB|F1SBH4 - symbol:POLR3F "Uncharacterized protein... 258 3.4e-22 1
MGI|MGI:1924086 - symbol:Polr3f "polymerase (RNA) III (DN... 258 3.4e-22 1
RGD|1306428 - symbol:Polr3f "polymerase (RNA) III (DNA di... 258 3.4e-22 1
ZFIN|ZDB-GENE-040426-972 - symbol:polr3f "polymerase (RNA... 258 3.4e-22 1
UNIPROTKB|E1BU41 - symbol:POLR3F "Uncharacterized protein... 256 5.5e-22 1
UNIPROTKB|J9P638 - symbol:POLR3F "Uncharacterized protein... 246 6.3e-21 1
WB|WBGene00021112 - symbol:W09C3.4 species:6239 "Caenorha... 156 5.5e-11 1
DICTYBASE|DDB_G0272022 - symbol:rpc34 "RNA polymerase III... 138 5.5e-09 1
POMBASE|SPCC290.02 - symbol:rpc34 "DNA-directed RNA polym... 135 1.3e-08 1
CGD|CAL0000539 - symbol:orf19.5608 species:5476 "Candida ... 124 2.6e-07 1
ASPGD|ASPL0000037589 - symbol:AN9125 species:162425 "Emer... 123 3.9e-07 1
SGD|S000005286 - symbol:RPC34 "RNA polymerase III subunit... 116 1.8e-06 1
GENEDB_PFALCIPARUM|PF14_0207 - symbol:PF14_0207 "RNA poly... 98 0.00016 1
UNIPROTKB|Q8ILN6 - symbol:PF14_0207 "RNA polymerase subun... 98 0.00016 1
>FB|FBgn0038951 [details] [associations]
symbol:CG5380 species:7227 "Drosophila melanogaster"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS;NAS] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=ISS] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR007832 Pfam:PF05158
PIRSF:PIRSF028763 EMBL:AE014297 GO:GO:0005634 GO:GO:0022008
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 eggNOG:COG5111 KO:K03025
InterPro:IPR016049 PANTHER:PTHR12780 GeneTree:ENSGT00390000009679
OMA:SITGGAW EMBL:AY119241 RefSeq:NP_001247237.1 RefSeq:NP_651029.1
UniGene:Dm.13730 UniGene:Dm.38066 ProteinModelPortal:Q9VD25
SMR:Q9VD25 DIP:DIP-17810N IntAct:Q9VD25 MINT:MINT-299125
STRING:Q9VD25 PRIDE:Q9VD25 EnsemblMetazoa:FBtr0084236
EnsemblMetazoa:FBtr0305320 GeneID:42619 KEGG:dme:Dmel_CG5380
UCSC:CG5380-RA FlyBase:FBgn0038951 InParanoid:Q9VD25
OrthoDB:EOG4W3R3R PhylomeDB:Q9VD25 GenomeRNAi:42619 NextBio:829724
Bgee:Q9VD25 GermOnline:CG5380 Uniprot:Q9VD25
Length = 293
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 53/75 (70%), Positives = 59/75 (78%)
Query: 9 GGNLLYKVKDPVTNEKL-KDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKIL 67
G L+Y+ KDP L KD+DNEEKVVY I+EE GNKGIW+RDIR KSNL QLNKIL
Sbjct: 56 GEKLVYRAKDPEKKSALPKDADNEEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQLNKIL 115
Query: 68 KQLETKKIIKAVKSV 82
K LETKK+IKAVKSV
Sbjct: 116 KNLETKKLIKAVKSV 130
>UNIPROTKB|F1MYX7 [details] [associations]
symbol:POLR3F "DNA-directed RNA polymerase III subunit
RPC6" species:9913 "Bos taurus" [GO:0045089 "positive regulation of
innate immune response" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR007832 Pfam:PF05158
PIRSF:PIRSF028763 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 IPI:IPI00699294 UniGene:Bt.27185
InterPro:IPR016049 PANTHER:PTHR12780 GeneTree:ENSGT00390000009679
OMA:SITGGAW EMBL:DAAA02035728 EMBL:DAAA02035725 EMBL:DAAA02035726
EMBL:DAAA02035727 Ensembl:ENSBTAT00000011619 Uniprot:F1MYX7
Length = 316
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>UNIPROTKB|Q2T9S3 [details] [associations]
symbol:POLR3F "DNA-directed RNA polymerase III subunit
RPC6" species:9913 "Bos taurus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0045089 "positive regulation of innate immune
response" evidence=ISS] [GO:0032728 "positive regulation of
interferon-beta production" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR007832
Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0005634 GO:GO:0003677
GO:GO:0045087 GO:GO:0006351 GO:GO:0051607 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 EMBL:BC111292 IPI:IPI00699294
RefSeq:NP_001033237.1 UniGene:Bt.27185 ProteinModelPortal:Q2T9S3
SMR:Q2T9S3 STRING:Q2T9S3 GeneID:529410 KEGG:bta:529410 CTD:10621
eggNOG:COG5111 HOGENOM:HOG000231688 HOVERGEN:HBG006817
InParanoid:Q2T9S3 KO:K03025 OrthoDB:EOG4VQ9PP NextBio:20875029
InterPro:IPR016049 PANTHER:PTHR12780 Uniprot:Q2T9S3
Length = 316
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>UNIPROTKB|E2RG78 [details] [associations]
symbol:POLR3F "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 CTD:10621 KO:K03025 InterPro:IPR016049
PANTHER:PTHR12780 GeneTree:ENSGT00390000009679 EMBL:AAEX03013766
RefSeq:XP_857138.2 Ensembl:ENSCAFT00000008718 GeneID:477143
KEGG:cfa:477143 NextBio:20852675 Uniprot:E2RG78
Length = 316
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>UNIPROTKB|Q9H1D9 [details] [associations]
symbol:POLR3F "DNA-directed RNA polymerase III subunit
RPC6" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0045087 "innate immune response" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=NAS] [GO:0006359
"regulation of transcription from RNA polymerase III promoter"
evidence=NAS] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IMP] [GO:0045089 "positive regulation of
innate immune response" evidence=IMP] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=NAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=TAS] [GO:0006385 "transcription elongation from
RNA polymerase III promoter" evidence=TAS] [GO:0006386 "termination
of RNA polymerase III transcription" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_71 InterPro:IPR007832 Pfam:PF05158
PIRSF:PIRSF028763 EMBL:U93869 GO:GO:0003677 GO:GO:0045087
GO:GO:0051607 EMBL:CH471133 GO:GO:0045089 Reactome:REACT_1788
GO:GO:0006359 GO:GO:0005666 GO:GO:0003899 GO:GO:0032728
EMBL:AL121893 GO:GO:0006386 GO:GO:0006385 CTD:10621 eggNOG:COG5111
HOGENOM:HOG000231688 HOVERGEN:HBG006817 KO:K03025 OrthoDB:EOG4VQ9PP
InterPro:IPR016049 PANTHER:PTHR12780 OMA:SITGGAW EMBL:AK290892
EMBL:BC012588 IPI:IPI00100245 RefSeq:NP_006457.2 UniGene:Hs.472227
PDB:2DK5 PDB:2YU3 PDBsum:2DK5 PDBsum:2YU3 ProteinModelPortal:Q9H1D9
SMR:Q9H1D9 DIP:DIP-34646N IntAct:Q9H1D9 MINT:MINT-1377146
STRING:Q9H1D9 PhosphoSite:Q9H1D9 DMDM:20139728 PRIDE:Q9H1D9
DNASU:10621 Ensembl:ENST00000377603 GeneID:10621 KEGG:hsa:10621
UCSC:uc002wqv.3 GeneCards:GC20P018457 HGNC:HGNC:15763
neXtProt:NX_Q9H1D9 PharmGKB:PA33520 InParanoid:Q9H1D9
PhylomeDB:Q9H1D9 BindingDB:Q9H1D9 ChEMBL:CHEMBL2143
EvolutionaryTrace:Q9H1D9 GenomeRNAi:10621 NextBio:40356
ArrayExpress:Q9H1D9 Bgee:Q9H1D9 CleanEx:HS_POLR3F
Genevestigator:Q9H1D9 GermOnline:ENSG00000132664 Uniprot:Q9H1D9
Length = 316
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>UNIPROTKB|F1SBH4 [details] [associations]
symbol:POLR3F "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045089 "positive regulation of innate immune response"
evidence=IEA] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763
GO:GO:0003677 GO:GO:0006351 GO:GO:0045089 GO:GO:0003899
GO:GO:0032728 CTD:10621 KO:K03025 InterPro:IPR016049
PANTHER:PTHR12780 GeneTree:ENSGT00390000009679 OMA:SITGGAW
EMBL:CU914246 RefSeq:XP_003483946.1 Ensembl:ENSSSCT00000007767
GeneID:100738796 KEGG:ssc:100738796 Uniprot:F1SBH4
Length = 316
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>MGI|MGI:1924086 [details] [associations]
symbol:Polr3f "polymerase (RNA) III (DNA directed)
polypeptide F" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=ISO] [GO:0045087 "innate immune response" evidence=IEA]
[GO:0045089 "positive regulation of innate immune response"
evidence=ISO] [GO:0051607 "defense response to virus" evidence=IEA]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 MGI:MGI:1924086
GO:GO:0005634 GO:GO:0003677 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728 CTD:10621
eggNOG:COG5111 HOGENOM:HOG000231688 HOVERGEN:HBG006817 KO:K03025
OrthoDB:EOG4VQ9PP InterPro:IPR016049 PANTHER:PTHR12780
GeneTree:ENSGT00390000009679 OMA:SITGGAW EMBL:AK036166
EMBL:AK076538 EMBL:AK144679 EMBL:BC009159 IPI:IPI00122358
RefSeq:NP_084039.2 UniGene:Mm.389351 PDB:2DK8 PDBsum:2DK8
ProteinModelPortal:Q921X6 SMR:Q921X6 STRING:Q921X6
PhosphoSite:Q921X6 PRIDE:Q921X6 Ensembl:ENSMUST00000028914
GeneID:70408 KEGG:mmu:70408 InParanoid:Q921X6
EvolutionaryTrace:Q921X6 NextBio:331553 Bgee:Q921X6
CleanEx:MM_POLR3F Genevestigator:Q921X6
GermOnline:ENSMUSG00000027427 Uniprot:Q921X6
Length = 316
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 72 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 131
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 132 SKKLIKAVKSVA 143
>RGD|1306428 [details] [associations]
symbol:Polr3f "polymerase (RNA) III (DNA directed) polypeptide
F" species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032728 "positive regulation of interferon-beta
production" evidence=ISO] [GO:0045089 "positive regulation of
innate immune response" evidence=ISO] InterPro:IPR007832
Pfam:PF05158 PIRSF:PIRSF028763 RGD:1306428 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 EMBL:CH474026 CTD:10621 KO:K03025
OrthoDB:EOG4VQ9PP InterPro:IPR016049 PANTHER:PTHR12780
GeneTree:ENSGT00390000009679 IPI:IPI00195213 RefSeq:NP_001101254.1
UniGene:Rn.22329 Ensembl:ENSRNOT00000010468 GeneID:311487
KEGG:rno:311487 UCSC:RGD:1306428 NextBio:663707 Uniprot:D3ZQ56
Length = 371
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 50/72 (69%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 127 LLYRIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 186
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 187 SKKLIKAVKSVA 198
>ZFIN|ZDB-GENE-040426-972 [details] [associations]
symbol:polr3f "polymerase (RNA) III (DNA directed)
polypeptide F" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763
ZFIN:ZDB-GENE-040426-972 GO:GO:0003677 GO:GO:0006351 GO:GO:0060041
GO:GO:0003899 CTD:10621 HOVERGEN:HBG006817 KO:K03025
InterPro:IPR016049 PANTHER:PTHR12780 EMBL:BC051782 IPI:IPI00483706
RefSeq:NP_957481.1 UniGene:Dr.24983 ProteinModelPortal:Q7ZTZ0
SMR:Q7ZTZ0 STRING:Q7ZTZ0 GeneID:394162 KEGG:dre:394162
InParanoid:Q7ZTZ0 NextBio:20815110 ArrayExpress:Q7ZTZ0
Uniprot:Q7ZTZ0
Length = 314
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 50/72 (69%), Positives = 63/72 (87%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++KD + K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 70 LLYRLKDTQSASKVKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 129
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 130 SKKLIKAVKSVA 141
>UNIPROTKB|E1BU41 [details] [associations]
symbol:POLR3F "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0045089
"positive regulation of innate immune response" evidence=IEA]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0003677
GO:GO:0006351 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728 CTD:10621
KO:K03025 InterPro:IPR016049 PANTHER:PTHR12780
GeneTree:ENSGT00390000009679 OMA:SITGGAW EMBL:AADN02041178
IPI:IPI00578749 RefSeq:NP_001186330.1 UniGene:Gga.5581
Ensembl:ENSGALT00000014238 GeneID:416723 KEGG:gga:416723
NextBio:20820145 Uniprot:E1BU41
Length = 314
Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 49/72 (68%), Positives = 62/72 (86%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
LLY++K+ K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++NKILK LE
Sbjct: 70 LLYRIKESQNASKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLE 129
Query: 72 TKKIIKAVKSVA 83
+KK+IKAVKSVA
Sbjct: 130 SKKLIKAVKSVA 141
>UNIPROTKB|J9P638 [details] [associations]
symbol:POLR3F "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 InterPro:IPR016049 PANTHER:PTHR12780
GeneTree:ENSGT00390000009679 OMA:SITGGAW EMBL:AAEX03013766
Ensembl:ENSCAFT00000043193 Uniprot:J9P638
Length = 323
Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
Identities = 52/79 (65%), Positives = 65/79 (82%)
Query: 12 LLYKVKD-----PVTN--EKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLN 64
LLY++KD PV+ K+K SDN+EK+VY+IIE+AGNKGIW RDIR+KSNL T++N
Sbjct: 72 LLYRIKDSQNAGPVSFFLSKMKGSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEIN 131
Query: 65 KILKQLETKKIIKAVKSVA 83
KILK LE+KK+IKAVKSVA
Sbjct: 132 KILKNLESKKLIKAVKSVA 150
>WB|WBGene00021112 [details] [associations]
symbol:W09C3.4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763
GO:GO:0005634 GO:GO:0003677 GO:GO:0000003 GO:GO:0006351
GO:GO:0003899 eggNOG:COG5111 HOGENOM:HOG000231688 KO:K03025
InterPro:IPR016049 PANTHER:PTHR12780 EMBL:FO080504 PIR:T34460
RefSeq:NP_491427.1 ProteinModelPortal:P91529 SMR:P91529
STRING:P91529 PaxDb:P91529 EnsemblMetazoa:W09C3.4 GeneID:172081
KEGG:cel:CELE_W09C3.4 UCSC:W09C3.4 CTD:172081 WormBase:W09C3.4
GeneTree:ENSGT00390000009679 InParanoid:P91529 OMA:SITGGAW
NextBio:873937 Uniprot:P91529
Length = 296
Score = 156 (60.0 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 34/74 (45%), Positives = 51/74 (68%)
Query: 9 GGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
GG L KV T+E++ ++ EE+V+Y +IEE+ +GIW++++R S L QL K LK
Sbjct: 66 GGVLRLKVN---TSEQIAGTE-EEQVIYSLIEESKTRGIWIKELREGSGLNQLQLRKTLK 121
Query: 69 QLETKKIIKAVKSV 82
LETKK+IK +K+V
Sbjct: 122 SLETKKLIKTIKAV 135
>DICTYBASE|DDB_G0272022 [details] [associations]
symbol:rpc34 "RNA polymerase III subunit"
species:44689 "Dictyostelium discoideum" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763
dictyBase:DDB_G0272022 GO:GO:0003677 GenomeReviews:CM000151_GR
EMBL:AAFI02000007 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
eggNOG:COG5111 KO:K03025 InterPro:IPR016049 PANTHER:PTHR12780
OMA:SITGGAW RefSeq:XP_645385.1 ProteinModelPortal:Q86JM3
STRING:Q86JM3 PRIDE:Q86JM3 EnsemblProtists:DDB0216315
GeneID:8618274 KEGG:ddi:DDB_G0272022 ProtClustDB:CLSZ2729252
Uniprot:Q86JM3
Length = 293
Score = 138 (53.6 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 26/69 (37%), Positives = 43/69 (62%)
Query: 14 YKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETK 73
YK +P K + E+ ++Y++IE + N G W R+++ S Q+ KILK LE++
Sbjct: 61 YKEVNPEDQAKFRGLGVEDFLIYQLIEASSNTGAWTRELKNSSGYQQVQITKILKTLESR 120
Query: 74 KIIKAVKSV 82
K+IK+VKS+
Sbjct: 121 KLIKSVKSI 129
>POMBASE|SPCC290.02 [details] [associations]
symbol:rpc34 "DNA-directed RNA polymerase III complex
subunit Rpc34 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISO]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763
PomBase:SPCC290.02 GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003677 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 eggNOG:COG5111 KO:K03025 InterPro:IPR016049
PANTHER:PTHR12780 OMA:SITGGAW EMBL:DQ156223 PIR:T41266
RefSeq:NP_588398.1 ProteinModelPortal:O94553 STRING:O94553
EnsemblFungi:SPCC290.02.1 GeneID:2538992 KEGG:spo:SPCC290.02
HOGENOM:HOG000186563 OrthoDB:EOG4WQ4BZ NextBio:20800167
Uniprot:O94553
Length = 301
Score = 135 (52.6 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 25/76 (32%), Positives = 49/76 (64%)
Query: 10 GNLL-YKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILK 68
GN+L Y+ + + + +E++VY I+ +GN+GIW + + ++NL + +++ LK
Sbjct: 64 GNVLVYRAVRLDEAKTVSTMEGDEQIVYSFIKNSGNEGIWRKTLTLRTNLHVSVVDRCLK 123
Query: 69 QLETKKIIKAVKSVAN 84
LE+K ++K++KSV N
Sbjct: 124 SLESKNLVKSIKSVKN 139
>CGD|CAL0000539 [details] [associations]
symbol:orf19.5608 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0042797 "tRNA transcription from RNA polymerase
III promoter" evidence=IEA] InterPro:IPR007832 Pfam:PF05158
PIRSF:PIRSF028763 CGD:CAL0000539 GO:GO:0003677 GO:GO:0006351
EMBL:AACQ01000034 EMBL:AACQ01000033 GO:GO:0003899 eggNOG:COG5111
KO:K03025 InterPro:IPR016049 PANTHER:PTHR12780 RefSeq:XP_719169.1
RefSeq:XP_719283.1 ProteinModelPortal:Q5ABU2 STRING:Q5ABU2
GeneID:3639054 GeneID:3639178 KEGG:cal:CaO19.13051
KEGG:cal:CaO19.5608 Uniprot:Q5ABU2
Length = 330
Score = 124 (48.7 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 8 IGGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKIL 67
+G L ++ +K+ ++E ++Y IE +G +GIW + I+ K+NL + K L
Sbjct: 61 MGDQLKFQTVAEEEAKKVSSMSDDEAMIYSYIEASGREGIWTKTIKAKTNLHQHIVQKCL 120
Query: 68 KQLETKKIIKAVKSV 82
K LE + IK++KSV
Sbjct: 121 KNLENNRYIKSIKSV 135
>ASPGD|ASPL0000037589 [details] [associations]
symbol:AN9125 species:162425 "Emericella nidulans"
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0003677
EMBL:BN001306 GO:GO:0006351 GO:GO:0003899 EMBL:AACD01000169
eggNOG:COG5111 KO:K03025 InterPro:IPR016049 PANTHER:PTHR12780
HOGENOM:HOG000186563 OrthoDB:EOG4WQ4BZ RefSeq:XP_682394.1
ProteinModelPortal:Q5ARF5 STRING:Q5ARF5
EnsemblFungi:CADANIAT00009485 GeneID:2868020 KEGG:ani:AN9125.2
OMA:IDECSPE Uniprot:Q5ARF5
Length = 359
Score = 123 (48.4 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 23 EKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
EKL++ +E +VY +I G GIW+R I+ ++NL + L++ LK LE K IK+V +V
Sbjct: 85 EKLQNLSPDESLVYNVIHSTGRSGIWVRAIQNRTNLHKSILDRCLKSLEGKNYIKSVHNV 144
>SGD|S000005286 [details] [associations]
symbol:RPC34 "RNA polymerase III subunit C34" species:4932
"Saccharomyces cerevisiae" [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IDA;IMP] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IPI] InterPro:IPR007832 Pfam:PF05158
PIRSF:PIRSF028763 SGD:S000005286 GO:GO:0005739 GO:GO:0003677
EMBL:BK006947 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:X77395
EMBL:X63746 GO:GO:0005666 GO:GO:0003899 Reactome:REACT_83470
Reactome:REACT_87991 GO:GO:0042797 eggNOG:COG5111 KO:K03025
InterPro:IPR016049 PANTHER:PTHR12780 GeneTree:ENSGT00390000009679
HOGENOM:HOG000186563 OrthoDB:EOG4WQ4BZ EMBL:Z71618 PIR:A45107
RefSeq:NP_014400.1 ProteinModelPortal:P32910 SMR:P32910
DIP:DIP-202N IntAct:P32910 MINT:MINT-567632 STRING:P32910
PaxDb:P32910 PeptideAtlas:P32910 EnsemblFungi:YNR003C GeneID:855737
KEGG:sce:YNR003C CYGD:YNR003c OMA:WFTDSEL NextBio:980127
Genevestigator:P32910 GermOnline:YNR003C Uniprot:P32910
Length = 317
Score = 116 (45.9 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 23/52 (44%), Positives = 36/52 (69%)
Query: 31 EEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
EE +VY IE +G +GIW + I+ ++NL + K LK LE+++ +K+VKSV
Sbjct: 89 EEALVYSYIEASGREGIWSKTIKARTNLHQHVVLKCLKSLESQRYVKSVKSV 140
>GENEDB_PFALCIPARUM|PF14_0207 [details] [associations]
symbol:PF14_0207 "RNA polymerase subunit,
putative" species:5833 "Plasmodium falciparum" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 EMBL:AE014187 GO:GO:0003899 KO:K03025
InterPro:IPR016049 PANTHER:PTHR12780 RefSeq:XP_001348381.2
ProteinModelPortal:Q8ILN6 PRIDE:Q8ILN6
EnsemblProtists:PF14_0207:mRNA GeneID:811789 KEGG:pfa:PF14_0207
EuPathDB:PlasmoDB:PF3D7_1421400 HOGENOM:HOG000281293
ProtClustDB:CLSZ2432693 Uniprot:Q8ILN6
Length = 311
Score = 98 (39.6 bits), Expect = 0.00016, P = 0.00016
Identities = 19/71 (26%), Positives = 43/71 (60%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
++ ++++ +KLK+ + + +++ +E + N GIW D+R ++ L+ Q+ K +K L
Sbjct: 67 IITRMRNEQVTKKLKELSDIDFLIFTKVENSQNNGIWTADLRKQTKLLIHQVQKGVKLLC 126
Query: 72 TKKIIKAVKSV 82
K+IK V ++
Sbjct: 127 ENKLIKQVNNI 137
>UNIPROTKB|Q8ILN6 [details] [associations]
symbol:PF14_0207 "RNA polymerase subunit, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=ISS] InterPro:IPR007832
Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 EMBL:AE014187 GO:GO:0003899 KO:K03025
InterPro:IPR016049 PANTHER:PTHR12780 RefSeq:XP_001348381.2
ProteinModelPortal:Q8ILN6 PRIDE:Q8ILN6
EnsemblProtists:PF14_0207:mRNA GeneID:811789 KEGG:pfa:PF14_0207
EuPathDB:PlasmoDB:PF3D7_1421400 HOGENOM:HOG000281293
ProtClustDB:CLSZ2432693 Uniprot:Q8ILN6
Length = 311
Score = 98 (39.6 bits), Expect = 0.00016, P = 0.00016
Identities = 19/71 (26%), Positives = 43/71 (60%)
Query: 12 LLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLE 71
++ ++++ +KLK+ + + +++ +E + N GIW D+R ++ L+ Q+ K +K L
Sbjct: 67 IITRMRNEQVTKKLKELSDIDFLIFTKVENSQNNGIWTADLRKQTKLLIHQVQKGVKLLC 126
Query: 72 TKKIIKAVKSV 82
K+IK V ++
Sbjct: 127 ENKLIKQVNNI 137
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.135 0.367 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 117 117 0.00091 102 3 11 22 0.38 31
29 0.46 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 489 (52 KB)
Total size of DFA: 97 KB (2071 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.59u 0.07s 14.66t Elapsed: 00:00:22
Total cpu time: 14.59u 0.07s 14.66t Elapsed: 00:00:22
Start: Thu Aug 15 13:16:44 2013 End: Thu Aug 15 13:17:06 2013