RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7778
         (117 letters)



>d2dk5a1 a.4.5.85 (A:8-85) DNA-directed RNA polymerase III subunit
          RPC6, RPO3F {Human (Homo sapiens) [TaxId: 9606]}
          Length = 78

 Score = 86.7 bits (215), Expect = 2e-24
 Identities = 45/67 (67%), Positives = 56/67 (83%)

Query: 18 DPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIK 77
          D     K+K SDN+EK+VY+IIE+AGNKGIW RD+R+KSNL  T++NKILK LE+KK+IK
Sbjct: 1  DSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIK 60

Query: 78 AVKSVAN 84
          AVKSVA 
Sbjct: 61 AVKSVAA 67


>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
           (aminotransferase) {Synechococcus sp., strain GR6
           [TaxId: 1131]}
          Length = 427

 Score = 28.7 bits (63), Expect = 0.15
 Identities = 10/78 (12%), Positives = 30/78 (38%), Gaps = 8/78 (10%)

Query: 5   GFLIGGNLLYKVKDPVTNEKLKDSDNEEKVVYKIIEEAGNKGIWMRDIRFKSNLMPTQLN 64
             + G    +  + PV N +     + +K   +       +GI++   +F++        
Sbjct: 354 SGMFG---FFFTEGPVHNYEDAKKSDLQKF-SRFHRGMLEQGIYLAPSQFEAGFTSLAHT 409

Query: 65  KILKQLETKKIIKAVKSV 82
           +  + ++    + A ++V
Sbjct: 410 E--EDID--ATLAAARTV 423


>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus
          solfataricus [TaxId: 2287]}
          Length = 90

 Score = 23.1 bits (50), Expect = 6.8
 Identities = 11/44 (25%), Positives = 17/44 (38%)

Query: 39 IEEAGNKGIWMRDIRFKSNLMPTQLNKILKQLETKKIIKAVKSV 82
          I EA   G     I + +NL      + +K L   +II+     
Sbjct: 11 ILEACKSGSPKTRIMYGANLSYALTGRYIKMLMDLEIIRQEGKQ 54


>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation
          factor SelB {Moorella thermoacetica [TaxId: 1525]}
          Length = 64

 Score = 22.7 bits (49), Expect = 7.0
 Identities = 9/57 (15%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 28 SDNEEKVVYKI---IEEAGNKGIWMRDIRFKSNLMPTQLNKILKQL-ETKKIIKAVK 80
          S+ ++K++  +      +  +    +++    NL P++L ++L  L     ++K   
Sbjct: 2  SETQKKLLKDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKIND 58


>d2igsa1 d.2.1.11 (A:4-215) Hypothetical protein PA2222 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 212

 Score = 23.5 bits (50), Expect = 7.7
 Identities = 12/32 (37%), Positives = 14/32 (43%)

Query: 83  ANIEYLTEGTVNAMVLPSRKKREERQDRGVLL 114
            N+  LT GT  AM LP   K       G+ L
Sbjct: 149 VNLRTLTPGTWQAMTLPEDIKALVGPGVGLRL 180


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.135    0.367 

Gapped
Lambda     K      H
   0.267   0.0694    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 406,423
Number of extensions: 17408
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 15
Length of query: 117
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 43
Effective length of database: 1,391,576
Effective search space: 59837768
Effective search space used: 59837768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)