BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy778
(75 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P13002|ELF1_DROME Protein grainyhead OS=Drosophila melanogaster GN=grh PE=2 SV=3
Length = 1333
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 49/66 (74%), Gaps = 2/66 (3%)
Query: 12 SDKKE--LEQVGLTTDGTVFSSLPLKRPKLMPPLNERVMLYVRQESDEIYTPLHVSPPTT 69
+DKK+ L+Q LT+ P+KR ++ PP +ERVMLYVRQE++E+YTPLHV PPTT
Sbjct: 1205 TDKKDHILDQNMLTSTPLTDFGPPMKRGRMTPPTSERVMLYVRQENEEVYTPLHVVPPTT 1264
Query: 70 QGLLNA 75
GLLNA
Sbjct: 1265 IGLLNA 1270
>sp|Q5M7R9|GRHL2_XENTR Grainyhead-like protein 2 homolog OS=Xenopus tropicalis GN=grhl2
PE=2 SV=1
Length = 619
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 21/88 (23%)
Query: 1 MHFGIYQSIWVSDKKELEQVGLTTDGTVFSSLPLKR-------------PKLMPPLNERV 47
+HFG Q QV TD + + +KR PK M + +V
Sbjct: 480 VHFGNLQRTG--------QVFYNTDDDIEGGVLVKRLLRPVDEDYGPPAPKQMKEGSRKV 531
Query: 48 MLYVRQESDEIYTPLHVSPPTTQGLLNA 75
+LYVR+E+DE++ L + PT +GLL A
Sbjct: 532 LLYVRKETDEVFDALMLKYPTVKGLLEA 559
>sp|Q5EY87|GRHL1_XENLA Grainyhead-like protein 1 homolog OS=Xenopus laevis GN=grhl1 PE=2
SV=1
Length = 609
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 29 FSSLPLKRPKLMPPLNERVMLYVRQESDEIYTPLHVSPPTTQGLLNA 75
F++ P K P++ P +RV+LYVR+E++E++ L + PT +GL+ A
Sbjct: 506 FNTPPAKLPRVDEP--KRVLLYVRRETEEVFDALMLKTPTLKGLMEA 550
>sp|Q8K5C0|GRHL2_MOUSE Grainyhead-like protein 2 homolog OS=Mus musculus GN=Grhl2 PE=2
SV=1
Length = 625
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 45 ERVMLYVRQESDEIYTPLHVSPPTTQGLLNA 75
+RV+LYVR+E+D+++ L + PT +GL+ A
Sbjct: 536 KRVLLYVRKENDDVFDALMLKSPTVKGLMEA 566
>sp|Q6ISB3|GRHL2_HUMAN Grainyhead-like protein 2 homolog OS=Homo sapiens GN=GRHL2 PE=1
SV=1
Length = 625
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 45 ERVMLYVRQESDEIYTPLHVSPPTTQGLLNA 75
+RV+LYVR+E+D+++ L + PT +GL+ A
Sbjct: 536 KRVLLYVRKETDDVFDALMLKSPTVKGLMEA 566
>sp|Q921D9|GRHL1_MOUSE Grainyhead-like protein 1 homolog OS=Mus musculus GN=Grhl1 PE=1
SV=1
Length = 618
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 45 ERVMLYVRQESDEIYTPLHVSPPTTQGLLNA 75
+RV+LYVR+ES+E++ L + P+ +GL+ A
Sbjct: 529 KRVLLYVRKESEEVFDALMLKTPSLKGLMEA 559
>sp|Q9NZI5|GRHL1_HUMAN Grainyhead-like protein 1 homolog OS=Homo sapiens GN=GRHL1 PE=1
SV=2
Length = 618
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 45 ERVMLYVRQESDEIYTPLHVSPPTTQGLLNA 75
+RV+LYVR+ES+E++ L + P+ +GL+ A
Sbjct: 529 KRVLLYVRKESEEVFDALMLKTPSLKGLMEA 559
>sp|Q5RAR8|GRHL1_PONAB Grainyhead-like protein 1 homolog OS=Pongo abelii GN=GRHL1 PE=2
SV=1
Length = 618
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 45 ERVMLYVRQESDEIYTPLHVSPPTTQGLLNA 75
+RV+LYVR+ES+E++ L + P+ +GL+ A
Sbjct: 529 KRVLLYVRKESEEVFDALMLKTPSLKGLMEA 559
>sp|Q6GL65|GRHL3_XENTR Grainyhead-like protein 3 homolog OS=Xenopus tropicalis GN=grhl3
PE=2 SV=1
Length = 594
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 45 ERVMLYVRQESDEIYTPLHVSPPTTQGLLNA 75
+RV+LYVR+E++E++ L + P +GL NA
Sbjct: 505 QRVLLYVRRETEEVFDALMLKTPDLKGLRNA 535
>sp|Q5FWH3|GRHL3_MOUSE Grainyhead-like protein 3 homolog OS=Mus musculus GN=Grhl3 PE=2
SV=1
Length = 603
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 45 ERVMLYVRQESDEIYTPLHVSPPTTQGLLNA 75
+RV+LYVR+E++E++ L + P +GL NA
Sbjct: 514 QRVLLYVRRETEEVFDALMLKTPDLKGLRNA 544
>sp|Q5PPL8|GRHL3_XENLA Grainyhead-like protein 3 homolog OS=Xenopus laevis GN=grhl3 PE=2
SV=1
Length = 595
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 46 RVMLYVRQESDEIYTPLHVSPPTTQGLLNA 75
RV+LYVR+E++E++ L + P +GL NA
Sbjct: 507 RVLLYVRRETEEVFDALMLKTPDLKGLRNA 536
>sp|Q8TE85|GRHL3_HUMAN Grainyhead-like protein 3 homolog OS=Homo sapiens GN=GRHL3 PE=1
SV=3
Length = 626
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 45 ERVMLYVRQESDEIYTPLHVSPPTTQGLLNA 75
+RV+LYVR+E++E++ L + P +GL NA
Sbjct: 513 QRVLLYVRRETEEVFDALMLKTPDLKGLRNA 543
>sp|P04007|RNS2_NICAL Ribonuclease S-2 OS=Nicotiana alata GN=S-2 PE=1 SV=1
Length = 214
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 4 GIYQSIWVSDKKELEQVGLTTDGTVFSSLPLKRPKLMPPLNERVML 49
G + ++ S +EL+++G+ D TV + + PK P N+ VM
Sbjct: 168 GGFPNLTCSRLRELKEIGICFDETVKNVIDCPNPKTCKPTNKGVMF 213
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,700,939
Number of Sequences: 539616
Number of extensions: 1042251
Number of successful extensions: 2260
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2246
Number of HSP's gapped (non-prelim): 14
length of query: 75
length of database: 191,569,459
effective HSP length: 46
effective length of query: 29
effective length of database: 166,747,123
effective search space: 4835666567
effective search space used: 4835666567
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)