Query psy778
Match_columns 75
No_of_seqs 65 out of 67
Neff 3.1
Searched_HMMs 46136
Date Fri Aug 16 18:41:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy778.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/778hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4091|consensus 99.0 1.6E-10 3.4E-15 93.6 1.8 49 26-75 348-403 (463)
2 KOG4069|consensus 41.7 7 0.00015 28.5 -0.5 25 49-73 112-138 (154)
3 PRK12472 hypothetical protein; 40.8 15 0.00033 31.1 1.3 20 47-66 332-358 (508)
4 TIGR03512 GldD_lipo gliding mo 24.9 26 0.00057 26.2 0.2 23 4-26 136-158 (186)
5 PRK06132 hypothetical protein; 21.6 43 0.00093 26.8 0.8 13 49-61 238-250 (359)
6 KOG0861|consensus 18.6 63 0.0014 24.5 1.1 47 2-54 27-73 (198)
7 PRK02268 hypothetical protein; 18.5 1.3E+02 0.0029 21.2 2.7 51 9-64 6-65 (141)
8 PF15585 Imm46: Immunity prote 17.8 75 0.0016 22.5 1.3 15 46-60 85-99 (129)
9 PF10679 DUF2491: Protein of u 16.7 77 0.0017 23.7 1.2 18 45-62 163-180 (212)
10 PRK03467 hypothetical protein; 12.7 1.1E+02 0.0025 21.6 1.1 29 45-73 42-70 (144)
No 1
>KOG4091|consensus
Probab=98.98 E-value=1.6e-10 Score=93.61 Aligned_cols=49 Identities=41% Similarity=0.680 Sum_probs=44.1
Q ss_pred CccccCCCCCCCCCCCCccce-----eEEEecccccc--cccceeccCCCccccccC
Q psy778 26 GTVFSSLPLKRPKLMPPLNER-----VMLYVRQESDE--IYTPLHVSPPTTQGLLNA 75 (75)
Q Consensus 26 ~~~~~~pp~K~~k~~~p~~~R-----VLLYVRketee--VFdaLmL~~Ptl~GL~~A 75 (75)
..+++ +|++..|+.+++++| ||||||+|+|+ ||+||||++||+.||++|
T Consensus 348 li~~~-~~a~~~rm~~~~~~R~~~p~v~lYvr~e~e~~~vy~al~~~~~t~~gla~a 403 (463)
T KOG4091|consen 348 LIQIC-GPADGIRMFNSLSERIVRPRVTLYVRKESEQEYVYHALHLVPPTVSGLAEA 403 (463)
T ss_pred hhhhc-CCcccccccCcccccccccceEEEEeccCCccccccchhccChhHHHHHHH
Confidence 45555 788888888889999 99999999999 999999999999999976
No 2
>KOG4069|consensus
Probab=41.73 E-value=7 Score=28.53 Aligned_cols=25 Identities=32% Similarity=0.708 Sum_probs=21.8
Q ss_pred EEeccccccccc--ceeccCCCccccc
Q psy778 49 LYVRQESDEIYT--PLHVSPPTTQGLL 73 (75)
Q Consensus 49 LYVRketeeVFd--aLmL~~Ptl~GL~ 73 (75)
=|+.+++|++|. .|+|..|.-.||+
T Consensus 112 kfl~~qNe~IY~~~Gl~l~dP~eRGLR 138 (154)
T KOG4069|consen 112 KFLNRQNEEIYHHVGLHLRDPMERGLR 138 (154)
T ss_pred HHHHhhhhhhccccceeecCchhhceE
Confidence 378889999997 5899999999996
No 3
>PRK12472 hypothetical protein; Provisional
Probab=40.78 E-value=15 Score=31.14 Aligned_cols=20 Identities=30% Similarity=0.559 Sum_probs=15.4
Q ss_pred eEEEecccc-------cccccceeccC
Q psy778 47 VMLYVRQES-------DEIYTPLHVSP 66 (75)
Q Consensus 47 VLLYVRket-------eeVFdaLmL~~ 66 (75)
=+||||+.+ -||||+..=.|
T Consensus 332 q~lyvr~~t~~~~~~~~~~~~~~~e~p 358 (508)
T PRK12472 332 QKLYVRRNTHKPAPDGGEVFDASIEVP 358 (508)
T ss_pred ceEEEecccCCCCCCCCccccceeeee
Confidence 369999999 68888775444
No 4
>TIGR03512 GldD_lipo gliding motility-associated lipoprotein GldD. Members of this protein family are found a number of Bacteriodetes lineage bacteria, including both species such as Flavobacterium johnsoniae, which possess a poorly understood form of rapid gliding motility, and other species which apparently do not. Mutation of GldD blocks both this motility and chitin utilization in the model species, Flavobacterium johnsoniae.
Probab=24.89 E-value=26 Score=26.20 Aligned_cols=23 Identities=9% Similarity=-0.096 Sum_probs=20.1
Q ss_pred eeeeeEEecchhhhhhccccCCC
Q psy778 4 GIYQSIWVSDKKELEQVGLTTDG 26 (75)
Q Consensus 4 ~~~q~~~~~~~k~~~~~s~~~d~ 26 (75)
|-.|+..+.+-+|++.|+++++.
T Consensus 136 Sq~QFy~TDSt~HFl~GaLYF~~ 158 (186)
T TIGR03512 136 SQIQFYVTDSTKHFLRGSVYFRT 158 (186)
T ss_pred ccceEEEeccccceeeeeEEEcc
Confidence 45799999999999999999864
No 5
>PRK06132 hypothetical protein; Provisional
Probab=21.60 E-value=43 Score=26.76 Aligned_cols=13 Identities=38% Similarity=0.749 Sum_probs=12.3
Q ss_pred EEecccccccccc
Q psy778 49 LYVRQESDEIYTP 61 (75)
Q Consensus 49 LYVRketeeVFda 61 (75)
|||||.-.+||++
T Consensus 238 l~vr~~~~~v~~~ 250 (359)
T PRK06132 238 LYVRRNFQPIFEA 250 (359)
T ss_pred EEEEeCCcEeEEE
Confidence 9999999999995
No 6
>KOG0861|consensus
Probab=18.60 E-value=63 Score=24.54 Aligned_cols=47 Identities=17% Similarity=0.140 Sum_probs=25.1
Q ss_pred cceeeeeEEecchhhhhhccccCCCccccCCCCCCCCCCCCccceeEEEeccc
Q psy778 2 HFGIYQSIWVSDKKELEQVGLTTDGTVFSSLPLKRPKLMPPLNERVMLYVRQE 54 (75)
Q Consensus 2 ~~~~~q~~~~~~~k~~~~~s~~~d~~~~~~pp~K~~k~~~p~~~RVLLYVRke 54 (75)
+||.||+- +..++|-=..-+ --+-..|...|.-.++. =+|-.|||++
T Consensus 27 ~FsfFqRs---sV~Efm~F~skt-vaeRt~~g~rqsvk~~~--Y~~h~yvrnd 73 (198)
T KOG0861|consen 27 SFSFFQRS---SVQEFMTFISKT-VAERTGPGQRQSVKHEE--YLVHVYVRND 73 (198)
T ss_pred cccceeec---cHHHHHHHHHHH-HHHhcCcccccccccce--eEEEEEEecC
Confidence 68888873 333332111101 11223355566555655 7899999985
No 7
>PRK02268 hypothetical protein; Provisional
Probab=18.49 E-value=1.3e+02 Score=21.18 Aligned_cols=51 Identities=18% Similarity=0.215 Sum_probs=28.6
Q ss_pred EEecchhhhhhccccCCCcccc---CCCCCCCCCCCCccceeEEEecccc------cccccceec
Q psy778 9 IWVSDKKELEQVGLTTDGTVFS---SLPLKRPKLMPPLNERVMLYVRQES------DEIYTPLHV 64 (75)
Q Consensus 9 ~~~~~~k~~~~~s~~~d~~~~~---~pp~K~~k~~~p~~~RVLLYVRket------eeVFdaLmL 64 (75)
|++.+.+|.+.|--.+=. .++ .-|.++.| +- .+++.|+.+++ -..|+|+--
T Consensus 6 I~v~s~~hv~~g~~~gf~-qv~hgK~apl~Rmk--pG--D~ivyYsp~~~~~~~~~~qaftAig~ 65 (141)
T PRK02268 6 IGVVSAEHVRRGVEGGFM-QVCHGKAAPLRRMK--PG--DWIIYYSPKTTFGGKDKLQAFTAIGK 65 (141)
T ss_pred EEEccHHHHHHHHhCCEE-EeCCCccchhhcCC--CC--CEEEEEeceEecCCCcccceEEEEEE
Confidence 678887775554432211 111 12333334 33 89999999987 455666554
No 8
>PF15585 Imm46: Immunity protein 46
Probab=17.84 E-value=75 Score=22.48 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=11.8
Q ss_pred eeEEEeccccccccc
Q psy778 46 RVMLYVRQESDEIYT 60 (75)
Q Consensus 46 RVLLYVRketeeVFd 60 (75)
==|||+|.++++.++
T Consensus 85 YGlLy~rDDEd~~~~ 99 (129)
T PF15585_consen 85 YGLLYIRDDEDPEHF 99 (129)
T ss_pred eeEEEEecCCCCCCC
Confidence 358999999887665
No 9
>PF10679 DUF2491: Protein of unknown function (DUF2491); InterPro: IPR019621 This entry represents a family of bacterial uncharacterised proteins.
Probab=16.70 E-value=77 Score=23.74 Aligned_cols=18 Identities=33% Similarity=0.401 Sum_probs=12.7
Q ss_pred ceeEEEecccccccccce
Q psy778 45 ERVMLYVRQESDEIYTPL 62 (75)
Q Consensus 45 ~RVLLYVRketeeVFdaL 62 (75)
+.+|||-|.=.++-..-|
T Consensus 163 q~~MLY~R~~~~d~~E~L 180 (212)
T PF10679_consen 163 QFCMLYEREVGDDRREYL 180 (212)
T ss_pred EEEEEEEeecCCCceEEE
Confidence 789999998765544433
No 10
>PRK03467 hypothetical protein; Provisional
Probab=12.73 E-value=1.1e+02 Score=21.55 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=25.6
Q ss_pred ceeEEEecccccccccceeccCCCccccc
Q psy778 45 ERVMLYVRQESDEIYTPLHVSPPTTQGLL 73 (75)
Q Consensus 45 ~RVLLYVRketeeVFdaLmL~~Ptl~GL~ 73 (75)
+.+-||+-.+.+.=--.+|+++|.++|-.
T Consensus 42 ~~~~l~~~S~~~TrH~~~~~~np~VAgTI 70 (144)
T PRK03467 42 QKVAFYLLTEEKTRHGQMMGPNAQVAGTV 70 (144)
T ss_pred CCeEEEEEcCCCCHHHHHHhhCCCEEEEE
Confidence 77889999999999999999999998853
Done!