Query psy778
Match_columns 75
No_of_seqs 65 out of 67
Neff 3.1
Searched_HMMs 13730
Date Fri Aug 16 18:41:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy778.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/778hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2i5nh2 f.23.10.1 (H:1-36) Pho 24.0 1.8 0.00013 22.6 -2.6 8 47-54 28-35 (36)
2 d1u36a_ b.1.18.1 (A:) p50 subu 16.0 54 0.004 19.5 2.8 26 29-56 65-90 (104)
3 d1a3qa1 b.1.18.1 (A:227-327) p 15.1 57 0.0041 19.4 2.7 27 29-57 63-89 (101)
4 d1ea9c2 b.71.1.1 (C:504-583) M 14.2 45 0.0033 17.8 1.8 15 45-59 11-25 (80)
5 d2bgwa1 a.60.2.5 (A:160-229) D 12.7 8.8 0.00064 20.7 -1.6 18 2-19 32-49 (70)
6 d1my7a_ b.1.18.1 (A:) p65 subu 12.0 81 0.0059 18.9 2.7 26 29-56 62-87 (107)
7 d1gjia1 b.1.18.1 (A:182-281) p 10.8 86 0.0063 18.5 2.5 25 30-57 63-87 (100)
8 d1fcda2 c.3.1.5 (A:115-255) Fl 10.8 62 0.0045 19.0 1.9 19 49-67 123-141 (141)
9 d1x2ia1 a.60.2.5 (A:2-69) ATP- 9.1 12 0.0009 20.1 -1.8 18 2-19 29-46 (68)
10 d1r0ka3 d.81.1.3 (A:127-264) 1 8.5 11 0.00081 24.1 -2.5 28 2-29 27-54 (138)
No 1
>d2i5nh2 f.23.10.1 (H:1-36) Photosystem II reaction centre subunit H, transmembrane region {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=23.98 E-value=1.8 Score=22.59 Aligned_cols=8 Identities=63% Similarity=1.232 Sum_probs=5.7
Q ss_pred eEEEeccc
Q psy778 47 VMLYVRQE 54 (75)
Q Consensus 47 VLLYVRke 54 (75)
||||.|+|
T Consensus 28 vllylrre 35 (36)
T d2i5nh2 28 VLLYLRRE 35 (36)
T ss_dssp HHHTHHHH
T ss_pred HHHhhccc
Confidence 67777776
No 2
>d1u36a_ b.1.18.1 (A:) p50 subunit of NF-kappa B transcription factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.04 E-value=54 Score=19.54 Aligned_cols=26 Identities=27% Similarity=0.485 Sum_probs=20.5
Q ss_pred ccCCCCCCCCCCCCccceeEEEeccccc
Q psy778 29 FSSLPLKRPKLMPPLNERVMLYVRQESD 56 (75)
Q Consensus 29 ~~~pp~K~~k~~~p~~~RVLLYVRkete 56 (75)
|..||=+-..+..| -.|.+||++.++
T Consensus 65 f~tPpY~~~~I~~p--V~V~i~l~r~sd 90 (104)
T d1u36a_ 65 FKTPKYKDVNITKP--ASVFVQLRRKSD 90 (104)
T ss_dssp EECCCCSCTTCSSC--EEEEEEEECTTT
T ss_pred EECCCCCCCccCCc--EEEEEEEEeCCC
Confidence 45577777888888 899999998774
No 3
>d1a3qa1 b.1.18.1 (A:227-327) p52 subunit of NF-kappa B (NFKB) {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.14 E-value=57 Score=19.38 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=20.4
Q ss_pred ccCCCCCCCCCCCCccceeEEEecccccc
Q psy778 29 FSSLPLKRPKLMPPLNERVMLYVRQESDE 57 (75)
Q Consensus 29 ~~~pp~K~~k~~~p~~~RVLLYVRketee 57 (75)
|-.||=+-..+..| -.|.+||++.++.
T Consensus 63 fktPpY~~~~I~~p--V~V~i~l~r~sd~ 89 (101)
T d1a3qa1 63 FRTPPYHKMKIERP--VTVFLQLKRKRGG 89 (101)
T ss_dssp EECCCCSCTTCSSC--EEEEEEEEETTTC
T ss_pred EECCCCCCcccCCc--EEEEEEEEECCCC
Confidence 34577777788888 8999999976653
No 4
>d1ea9c2 b.71.1.1 (C:504-583) Maltogenic amylase {Bacillus sp., cyclomaltodextrinase [TaxId: 1409]}
Probab=14.23 E-value=45 Score=17.78 Aligned_cols=15 Identities=20% Similarity=0.583 Sum_probs=12.1
Q ss_pred ceeEEEecccccccc
Q psy778 45 ERVMLYVRQESDEIY 59 (75)
Q Consensus 45 ~RVLLYVRketeeVF 59 (75)
.+|+.|+|+..++-+
T Consensus 11 ~~v~ay~R~~~~e~v 25 (80)
T d1ea9c2 11 SRQIAYLREDDQDTI 25 (80)
T ss_dssp CCEEEEEEECSSCEE
T ss_pred CCEEEEEEecCCCEE
Confidence 589999999877654
No 5
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]}
Probab=12.73 E-value=8.8 Score=20.74 Aligned_cols=18 Identities=22% Similarity=0.575 Sum_probs=14.5
Q ss_pred cceeeeeEEecchhhhhh
Q psy778 2 HFGIYQSIWVSDKKELEQ 19 (75)
Q Consensus 2 ~~~~~q~~~~~~~k~~~~ 19 (75)
|||..+.++..+.++|.+
T Consensus 32 ~F~s~~~l~~As~eeL~~ 49 (70)
T d2bgwa1 32 RFGSLERFFTASKAEISK 49 (70)
T ss_dssp HHSSHHHHTTCCHHHHHH
T ss_pred HhCCHHHHHHcCHHHHHc
Confidence 788888888888888765
No 6
>d1my7a_ b.1.18.1 (A:) p65 subunit of NF-kappa B (NFKB), dimerization domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.95 E-value=81 Score=18.90 Aligned_cols=26 Identities=38% Similarity=0.664 Sum_probs=19.9
Q ss_pred ccCCCCCCCCCCCCccceeEEEeccccc
Q psy778 29 FSSLPLKRPKLMPPLNERVMLYVRQESD 56 (75)
Q Consensus 29 ~~~pp~K~~k~~~p~~~RVLLYVRkete 56 (75)
|..||=+-..+..| -.|.+||++.++
T Consensus 62 fktPpY~~~~I~~p--V~V~i~l~r~sd 87 (107)
T d1my7a_ 62 FRTPPYADPSLQAP--VRVSMQLRRPSD 87 (107)
T ss_dssp EECCCCSCTTCCSC--EEEEEEEEETTT
T ss_pred EECCCCCCCcCCCC--EEEEEEEEECCC
Confidence 45577777778888 899999997654
No 7
>d1gjia1 b.1.18.1 (A:182-281) p65 subunit of NF-kappa B (NFKB), dimerization domain {Chicken (Gallus gallus), C-rel [TaxId: 9031]}
Probab=10.83 E-value=86 Score=18.52 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=17.3
Q ss_pred cCCCCCCCCCCCCccceeEEEecccccc
Q psy778 30 SSLPLKRPKLMPPLNERVMLYVRQESDE 57 (75)
Q Consensus 30 ~~pp~K~~k~~~p~~~RVLLYVRketee 57 (75)
-.||=++ .+..| -.|.+||++.++.
T Consensus 63 ~tP~Y~~-~I~~p--V~V~i~l~r~sd~ 87 (100)
T d1gjia1 63 RTPPFLR-DITEP--ITVKMQLRRPSDQ 87 (100)
T ss_dssp ECCCCSS-CCSSC--EEEEEEEEEGGGT
T ss_pred ECCCCCC-CCCCC--EEEEEEEEECCCC
Confidence 4455554 57777 8999999866543
No 8
>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}
Probab=10.79 E-value=62 Score=18.99 Aligned_cols=19 Identities=11% Similarity=0.134 Sum_probs=14.3
Q ss_pred EEecccccccccceeccCC
Q psy778 49 LYVRQESDEIYTPLHVSPP 67 (75)
Q Consensus 49 LYVRketeeVFdaLmL~~P 67 (75)
+..-..++.=||-||+.||
T Consensus 123 ~~~~~Ge~v~yD~l~vvPP 141 (141)
T d1fcda2 123 VETAFGDEFKADVINLIPP 141 (141)
T ss_dssp EEETTCCEEECSEEEECCC
T ss_pred EEeCCCcEEeeeEEEeCCC
Confidence 4555555666999999998
No 9
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=9.14 E-value=12 Score=20.14 Aligned_cols=18 Identities=28% Similarity=0.584 Sum_probs=13.6
Q ss_pred cceeeeeEEecchhhhhh
Q psy778 2 HFGIYQSIWVSDKKELEQ 19 (75)
Q Consensus 2 ~~~~~q~~~~~~~k~~~~ 19 (75)
|||..+.++..+.++|++
T Consensus 29 ~f~s~~~i~~As~eeL~~ 46 (68)
T d1x2ia1 29 HFGSVERVFTASVAELMK 46 (68)
T ss_dssp HHCSHHHHHHCCHHHHTT
T ss_pred HcCCHHHHHHhHHHHHHh
Confidence 678778887777777665
No 10
>d1r0ka3 d.81.1.3 (A:127-264) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}
Probab=8.49 E-value=11 Score=24.11 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=18.9
Q ss_pred cceeeeeEEecchhhhhhccccCCCccc
Q psy778 2 HFGIYQSIWVSDKKELEQVGLTTDGTVF 29 (75)
Q Consensus 2 ~~~~~q~~~~~~~k~~~~~s~~~d~~~~ 29 (75)
|+++||-+.-.+++++..--++-+|-+|
T Consensus 27 H~AI~Q~L~~~~~~~I~kI~LTASGGPF 54 (138)
T d1r0ka3 27 HNAIFQCFPHHNRDYVRRIIITASGGPF 54 (138)
T ss_dssp HHHHHHHCCTTCGGGEEEEEEEECCCTT
T ss_pred HHHHHHHHhhcCcccccEEEEeccchhh
Confidence 8899998877776666655555554443
Done!