BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>psy778
MHFGIYQSIWVSDKKELEQVGLTTDGTVFSSLPLKRPKLMPPLNERVMLYVRQESDEIYT
PLHVSPPTTQGLLNA

High Scoring Gene Products

Symbol, full name Information P value
grh
grainy head 		protein from Drosophila melanogaster 4.7e-08

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy778
        (75 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

FB|FBgn0259211 - symbol:grh "grainy head" species:7227 "D...   139  4.7e-08   1


>FB|FBgn0259211 [details] [associations]
            symbol:grh "grainy head" species:7227 "Drosophila
            melanogaster" [GO:0003677 "DNA binding" evidence=IDA] [GO:0005634
            "nucleus" evidence=NAS;IDA] [GO:0003700 "sequence-specific DNA
            binding transcription factor activity" evidence=IDA] [GO:0045944
            "positive regulation of transcription from RNA polymerase II
            promoter" evidence=IEP] [GO:0006357 "regulation of transcription
            from RNA polymerase II promoter" evidence=NAS] [GO:0008362
            "chitin-based embryonic cuticle biosynthetic process" evidence=IMP]
            [GO:0007009 "plasma membrane organization" evidence=IMP]
            [GO:0035159 "regulation of tube length, open tracheal system"
            evidence=IMP] [GO:0007424 "open tracheal system development"
            evidence=IEP;TAS] [GO:0008360 "regulation of cell shape"
            evidence=IMP] [GO:0007426 "tracheal outgrowth, open tracheal
            system" evidence=IMP] [GO:0016044 "cellular membrane organization"
            evidence=TAS] [GO:0007402 "ganglion mother cell fate determination"
            evidence=TAS] [GO:0007419 "ventral cord development" evidence=NAS]
            [GO:0035152 "regulation of tube architecture, open tracheal system"
            evidence=TAS] [GO:0007428 "primary branching, open tracheal system"
            evidence=TAS] [GO:0042127 "regulation of cell proliferation"
            evidence=IMP] [GO:0007399 "nervous system development"
            evidence=IMP] [GO:0003382 "epithelial cell morphogenesis"
            evidence=IMP] [GO:0042803 "protein homodimerization activity"
            evidence=IPI] [GO:0043565 "sequence-specific DNA binding"
            evidence=IDA] [GO:0007464 "R3/R4 cell fate commitment"
            evidence=IMP] [GO:0061041 "regulation of wound healing"
            evidence=IMP] [GO:0040003 "chitin-based cuticle development"
            evidence=IMP] [GO:0042052 "rhabdomere development" evidence=IMP]
            EMBL:AE013599 GO:GO:0005634 GO:GO:0008360 GO:GO:0008362
            GO:GO:0043565 GO:GO:0007464 GO:GO:0007419 GO:GO:0045944
            GO:GO:0007009 GO:GO:0003700 GO:GO:0006351 GO:GO:0003382
            GO:GO:0042127 GO:GO:0035159 GO:GO:0007402 GO:GO:0042052
            GO:GO:0007428 EMBL:X15657 EMBL:AY052066 EMBL:BT001414 EMBL:BT003182
            EMBL:BT029431 EMBL:AL035312 EMBL:BT011460 PIR:S06206
            RefSeq:NP_001246401.1 RefSeq:NP_476842.2 RefSeq:NP_476843.2
            RefSeq:NP_476844.2 RefSeq:NP_476845.2 RefSeq:NP_725725.1
            RefSeq:NP_725726.1 UniGene:Dm.3595 DIP:DIP-59591N STRING:P13002
            PaxDb:P13002 EnsemblMetazoa:FBtr0299706 GeneID:37038
            KEGG:dme:Dmel_CG42311 CTD:37038 FlyBase:FBgn0259211
            eggNOG:NOG241458 GeneTree:ENSGT00550000074370 InParanoid:P13002
            KO:K09275 OrthoDB:EOG4VHHNF PhylomeDB:P13002 GenomeRNAi:37038
            NextBio:801628 Bgee:P13002 GermOnline:CG5058 GO:GO:0061041
            GO:GO:0007426 InterPro:IPR007604 Pfam:PF04516 Uniprot:P13002
        Length = 1333

 Score = 139 (54.0 bits), Expect = 4.7e-08, P = 4.7e-08
 Identities = 26/32 (81%), Positives = 30/32 (93%)

Query:    44 NERVMLYVRQESDEIYTPLHVSPPTTQGLLNA 75
             +ERVMLYVRQE++E+YTPLHV PPTT GLLNA
Sbjct:  1239 SERVMLYVRQENEEVYTPLHVVPPTTIGLLNA 1270


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.132   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       75        63   0.00091  102 3  11 23  0.43    28
                                                     29  0.42    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  490 (52 KB)
  Total size of DFA:  87 KB (2066 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.89u 0.08s 6.97t   Elapsed:  00:00:05
  Total cpu time:  6.89u 0.08s 6.97t   Elapsed:  00:00:05
  Start:  Thu Aug 15 13:20:49 2013   End:  Thu Aug 15 13:20:54 2013

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