RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy778
         (75 letters)



>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.5 bits (65), Expect = 0.062
 Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 16/37 (43%)

Query: 7  QSIWVSDKKELEQVGLTTDGTVFSSLPLKRPKLMPPL 43
          Q++     K+L+           +SL L      P L
Sbjct: 20 QAL-----KKLQ-----------ASLKLYADDSAPAL 40


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 27.5 bits (60), Expect = 0.34
 Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 16/70 (22%)

Query: 6   YQSIWVSDKKELEQVGLTT------------DGTVFSSLPLKRPKLMPPLNERVMLYVRQ 53
           Y+ +    K E  Q  + T            D  VF+   + R +    L  R  L   +
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL--RQALL--E 146

Query: 54  ESDEIYTPLH 63
                   + 
Sbjct: 147 LRPAKNVLID 156


>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
           innate IMMU system, blood, membrane, cytolysin, immune
           SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
           PDB: 4a5w_B* 4e0s_B*
          Length = 913

 Score = 27.2 bits (59), Expect = 0.49
 Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 7/31 (22%)

Query: 2   HF-------GIYQSIWVSDKKELEQVGLTTD 25
           H+       G+Y  ++    +EL+  GLT +
Sbjct: 343 HYFTSGSLGGVYDLLYQFSSEELKNSGLTEE 373


>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune
           system; HET: TPO BMA; 2.51A {Homo sapiens}
          Length = 537

 Score = 26.4 bits (57), Expect = 0.93
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 4   GIYQSIWVSDKKELEQVGLTTD 25
           GIY+   V +K+ +E+   T +
Sbjct: 298 GIYEYTLVMNKEAMERGDYTLN 319


>3op7_A Aminotransferase class I and II; PLP-dependent transferase,
           structural genomics, joint center structural genomics,
           JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB:
           3p6k_A*
          Length = 375

 Score = 25.6 bits (57), Expect = 1.6
 Identities = 5/19 (26%), Positives = 9/19 (47%), Gaps = 1/19 (5%)

Query: 55  SDEIYTPL-HVSPPTTQGL 72
           SDE+Y     +  P+   +
Sbjct: 192 SDEVYRSFSELDVPSIIEV 210


>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA
           glycosylase, transition state analog, DNA repair; HET:
           NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A*
           1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
          Length = 369

 Score = 25.0 bits (55), Expect = 2.3
 Identities = 4/30 (13%), Positives = 9/30 (30%)

Query: 30  SSLPLKRPKLMPPLNERVMLYVRQESDEIY 59
             LP+K  K         +  +  +   + 
Sbjct: 226 EELPVKMKKTAVKQVPLAVAVLADDEGRVL 255


>1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens}
          SCOP: b.18.1.9
          Length = 171

 Score = 25.0 bits (54), Expect = 2.3
 Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 24 TDGTVFSSLPLKRPKLMPPLNERVMLYVRQESDEIYTPLHVS 65
          +DG+    + ++  +      + + +Y   +SDE YTP  +S
Sbjct: 55 SDGSQPHLVNIQFRRKTTV--KTLCIYADYKSDESYTPSKIS 94


>2zzj_A Glucuronan lyase A; beta-jelly roll; HET: CIT; 1.80A {Trichoderma
           reesei}
          Length = 238

 Score = 25.1 bits (54), Expect = 2.5
 Identities = 5/24 (20%), Positives = 7/24 (29%)

Query: 1   MHFGIYQSIWVSDKKELEQVGLTT 24
              G+Y + W  D       G   
Sbjct: 195 FRVGLYANSWHDDGHMTGTQGFRQ 218


>1gqp_A DOC1/APC10; cell cycle, APC10/DOC1, APC/cyclosome, ubiquitination,
           E3 ubiquitin ligase, beta sandwich, jelly roll; 2.2A
           {Saccharomyces cerevisiae} SCOP: b.18.1.9
          Length = 221

 Score = 24.3 bits (52), Expect = 4.5
 Identities = 5/21 (23%), Positives = 9/21 (42%)

Query: 45  ERVMLYVRQESDEIYTPLHVS 65
             + ++    +DE Y P  V 
Sbjct: 105 CVMAIFFSMIADESYAPSLVK 125


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0466    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,086,842
Number of extensions: 47137
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 11
Length of query: 75
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 31
Effective length of database: 5,473,269
Effective search space: 169671339
Effective search space used: 169671339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.1 bits)