RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy778
         (75 letters)



>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
          discoideum, class-I myosin MyoE [TaxId: 44689]}
          Length = 684

 Score = 23.9 bits (51), Expect = 2.3
 Identities = 8/25 (32%), Positives = 13/25 (52%), Gaps = 3/25 (12%)

Query: 39 LMPPLNERVMLY---VRQESDEIYT 60
          L+  + E   +    +R +SD IYT
Sbjct: 7  LLNQITENAFIENLTMRHKSDNIYT 31


>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
          (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 23.9 bits (51), Expect = 2.6
 Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 3/24 (12%)

Query: 40 MPPLNERVMLY---VRQESDEIYT 60
          +  LNE  +L+    R  S  IYT
Sbjct: 13 LTCLNEASVLHNLRERYFSGLIYT 36


>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain
          {Chicken (Gallus gallus), pectoral muscle [TaxId:
          9031]}
          Length = 794

 Score = 23.5 bits (50), Expect = 3.6
 Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 3/24 (12%)

Query: 40 MPPLNERVMLY---VRQESDEIYT 60
          M  L+E  +LY    R  +  IYT
Sbjct: 45 MTHLHEPAVLYNLKERYAAWMIYT 68


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
          scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 23.5 bits (50), Expect = 3.6
 Identities = 11/24 (45%), Positives = 12/24 (50%), Gaps = 3/24 (12%)

Query: 40 MPPLNERVMLY---VRQESDEIYT 60
          M  LNE  +LY    R  S  IYT
Sbjct: 43 MTYLNEASVLYNLRSRYTSGLIYT 66


>d1jyka_ c.68.1.13 (A:) CTP:phosphocholine cytidylytransferase
          LicC {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 229

 Score = 23.5 bits (49), Expect = 3.8
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 26 GTVFSSLPLKRPKLMPPLNERVMLY 50
          GT    L    PK +  +N++ ++ 
Sbjct: 14 GTRLRPLTENTPKALVQVNQKPLIE 38


>d1tzfa_ c.68.1.13 (A:) Glucose-1-phosphate cytidylyltransferase
          RfbF {Salmonella typhimurium [TaxId: 90371]}
          Length = 259

 Score = 22.7 bits (47), Expect = 5.5
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 26 GTVFSSLPLKRPKLMPPLNERVMLY 50
          GT  S   + +PK M  +  + +L+
Sbjct: 13 GTRLSEETIVKPKPMVEIGGKPILW 37


>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
          {Dictyostelium discoideum [TaxId: 44689]}
          Length = 712

 Score = 22.7 bits (48), Expect = 6.6
 Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 3/24 (12%)

Query: 40 MPPLNERVMLY---VRQESDEIYT 60
          +  LNE  + +   VR   D IYT
Sbjct: 47 LSYLNEPAVFHNLRVRYNQDLIYT 70


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 268,715
Number of extensions: 9445
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 9
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)