Query psy7780
Match_columns 317
No_of_seqs 288 out of 2380
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 18:41:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7780.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7780hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 100.0 4.3E-81 9.3E-86 567.2 26.7 297 1-316 73-405 (406)
2 KOG0726|consensus 100.0 1.3E-69 2.8E-74 479.6 14.0 298 1-317 107-440 (440)
3 KOG0727|consensus 100.0 8.2E-66 1.8E-70 448.1 16.7 287 2-307 78-400 (408)
4 KOG0728|consensus 100.0 2.2E-63 4.9E-68 432.4 17.9 289 2-309 70-394 (404)
5 KOG0652|consensus 100.0 2.9E-62 6.2E-67 427.6 15.0 279 13-310 105-419 (424)
6 PTZ00361 26 proteosome regulat 100.0 5.3E-57 1.1E-61 433.1 25.2 298 1-317 105-438 (438)
7 PTZ00454 26S protease regulato 100.0 1.7E-55 3.6E-60 420.0 26.3 288 1-307 67-390 (398)
8 KOG0729|consensus 100.0 3.1E-56 6.8E-61 390.7 14.3 296 2-316 96-431 (435)
9 KOG0651|consensus 100.0 7.8E-54 1.7E-58 382.1 9.7 288 2-309 56-379 (388)
10 KOG0730|consensus 100.0 1.1E-52 2.5E-57 405.9 16.9 212 72-305 429-676 (693)
11 PRK03992 proteasome-activating 100.0 3.9E-51 8.4E-56 390.9 26.4 296 2-316 54-388 (389)
12 KOG0733|consensus 100.0 1.6E-51 3.5E-56 393.4 17.5 212 72-305 506-771 (802)
13 TIGR01242 26Sp45 26S proteasom 100.0 3.4E-48 7.3E-53 368.4 24.6 283 2-303 45-363 (364)
14 KOG0734|consensus 100.0 1.3E-48 2.8E-53 368.7 15.5 212 74-307 327-545 (752)
15 KOG0736|consensus 100.0 3E-48 6.6E-53 378.8 17.9 216 72-305 667-934 (953)
16 KOG0738|consensus 100.0 7.4E-47 1.6E-51 345.9 15.8 216 70-305 205-471 (491)
17 KOG0731|consensus 100.0 1.2E-44 2.5E-49 359.4 18.2 216 72-306 306-556 (774)
18 COG0465 HflB ATP-dependent Zn 100.0 1.6E-44 3.4E-49 352.9 17.3 209 82-309 185-396 (596)
19 KOG0733|consensus 100.0 1E-44 2.2E-49 346.9 15.3 186 82-286 225-414 (802)
20 COG1223 Predicted ATPase (AAA+ 100.0 5E-44 1.1E-48 312.7 16.9 222 72-317 116-368 (368)
21 TIGR03689 pup_AAA proteasome A 100.0 4.1E-42 9E-47 334.4 22.1 282 2-307 108-482 (512)
22 KOG0735|consensus 100.0 1.5E-41 3.2E-46 329.5 16.6 183 82-286 703-888 (952)
23 COG0464 SpoVK ATPases of the A 100.0 4.8E-41 1E-45 331.4 18.6 200 82-303 278-483 (494)
24 KOG0739|consensus 100.0 7.6E-42 1.6E-46 303.9 8.1 192 72-286 128-353 (439)
25 TIGR01241 FtsH_fam ATP-depende 100.0 2.3E-40 5.1E-45 326.2 15.6 206 82-306 90-298 (495)
26 TIGR01243 CDC48 AAA family ATP 100.0 6.7E-40 1.5E-44 336.5 19.5 202 83-305 490-712 (733)
27 CHL00195 ycf46 Ycf46; Provisio 100.0 1.8E-39 3.9E-44 316.1 17.7 201 82-306 261-466 (489)
28 KOG0737|consensus 100.0 1.8E-39 3.8E-44 296.9 14.3 200 82-304 129-360 (386)
29 CHL00176 ftsH cell division pr 100.0 8.6E-39 1.9E-43 320.2 17.4 207 82-307 218-427 (638)
30 CHL00206 ycf2 Ycf2; Provisiona 100.0 9.5E-38 2.1E-42 329.0 18.2 202 82-308 1632-1882(2281)
31 PRK10733 hflB ATP-dependent me 100.0 4.3E-37 9.2E-42 310.5 20.0 205 82-305 187-394 (644)
32 KOG0741|consensus 100.0 1E-36 2.3E-41 287.9 10.6 206 82-307 258-494 (744)
33 KOG0740|consensus 100.0 1.1E-35 2.4E-40 280.4 12.3 215 71-307 147-408 (428)
34 KOG0730|consensus 100.0 5.7E-35 1.2E-39 283.2 16.0 194 82-304 220-417 (693)
35 PLN00020 ribulose bisphosphate 100.0 5.2E-34 1.1E-38 263.6 18.0 190 82-283 150-351 (413)
36 KOG0732|consensus 100.0 7.1E-35 1.5E-39 296.5 12.6 217 69-307 257-529 (1080)
37 TIGR01243 CDC48 AAA family ATP 100.0 1.1E-31 2.3E-36 275.9 18.6 202 82-305 214-437 (733)
38 KOG0743|consensus 99.9 2.9E-26 6.3E-31 215.4 11.1 204 46-276 195-413 (457)
39 KOG0736|consensus 99.9 2.9E-23 6.2E-28 204.3 14.4 204 82-309 433-659 (953)
40 PF00004 AAA: ATPase family as 99.9 1.5E-23 3.3E-28 169.8 9.8 128 83-232 1-132 (132)
41 KOG0744|consensus 99.9 7.8E-23 1.7E-27 184.4 10.9 210 74-309 174-420 (423)
42 KOG0742|consensus 99.9 4.9E-22 1.1E-26 184.0 13.7 198 82-305 386-614 (630)
43 KOG0735|consensus 99.9 1.7E-21 3.6E-26 190.4 13.4 206 81-304 432-649 (952)
44 COG0464 SpoVK ATPases of the A 99.8 2.2E-19 4.8E-24 177.4 17.0 201 82-306 20-229 (494)
45 CHL00181 cbbX CbbX; Provisiona 99.8 5.6E-19 1.2E-23 162.5 13.0 184 82-296 61-271 (287)
46 TIGR02881 spore_V_K stage V sp 99.8 1.6E-18 3.4E-23 157.7 15.2 174 81-286 43-241 (261)
47 TIGR02639 ClpA ATP-dependent C 99.8 4.9E-19 1.1E-23 182.1 11.5 192 82-304 205-430 (731)
48 TIGR02880 cbbX_cfxQ probable R 99.8 4.2E-18 9E-23 156.7 13.5 173 82-285 60-255 (284)
49 COG2256 MGS1 ATPase related to 99.8 2.6E-18 5.6E-23 159.7 10.9 175 82-307 50-242 (436)
50 PF05496 RuvB_N: Holliday junc 99.8 2.1E-18 4.6E-23 150.6 9.1 166 82-280 52-226 (233)
51 PRK11034 clpA ATP-dependent Cl 99.8 4E-18 8.7E-23 174.3 12.3 192 82-304 209-434 (758)
52 KOG2004|consensus 99.8 1.6E-18 3.6E-23 169.9 8.2 145 83-247 441-597 (906)
53 PRK00080 ruvB Holliday junctio 99.7 1.5E-17 3.2E-22 156.2 12.8 192 82-303 53-250 (328)
54 TIGR00763 lon ATP-dependent pr 99.7 1.8E-17 3.9E-22 171.5 12.9 200 82-301 349-584 (775)
55 COG2255 RuvB Holliday junction 99.7 4.3E-17 9.4E-22 145.4 10.8 193 82-304 54-252 (332)
56 TIGR00635 ruvB Holliday juncti 99.7 8.9E-17 1.9E-21 149.1 12.2 192 82-303 32-229 (305)
57 COG0466 Lon ATP-dependent Lon 99.7 2.2E-17 4.9E-22 162.6 8.0 206 78-303 347-584 (782)
58 TIGR02902 spore_lonB ATP-depen 99.7 5.6E-17 1.2E-21 161.0 8.2 213 72-303 60-332 (531)
59 TIGR03345 VI_ClpV1 type VI sec 99.7 3.2E-16 7E-21 162.9 12.4 200 72-303 182-431 (852)
60 PRK10865 protein disaggregatio 99.6 7.6E-16 1.6E-20 160.5 10.2 147 72-250 173-358 (857)
61 PRK13342 recombination factor 99.6 3.4E-15 7.5E-20 144.4 12.7 170 82-304 38-220 (413)
62 PRK00149 dnaA chromosomal repl 99.6 2.3E-15 5E-20 147.2 10.7 188 82-305 150-351 (450)
63 TIGR02928 orc1/cdc6 family rep 99.6 1.4E-14 2.9E-19 137.7 14.9 192 81-304 41-275 (365)
64 TIGR00362 DnaA chromosomal rep 99.6 4.6E-15 1E-19 143.2 11.3 187 82-305 138-339 (405)
65 TIGR03346 chaperone_ClpB ATP-d 99.6 9.9E-15 2.1E-19 152.5 14.5 170 82-283 196-396 (852)
66 CHL00095 clpC Clp protease ATP 99.6 7.3E-15 1.6E-19 153.0 12.2 170 82-283 202-401 (821)
67 PRK00411 cdc6 cell division co 99.6 3.4E-14 7.5E-19 136.4 15.3 191 82-304 57-283 (394)
68 KOG2028|consensus 99.6 9.9E-15 2.1E-19 134.2 10.3 185 72-303 133-368 (554)
69 PRK14956 DNA polymerase III su 99.6 1.4E-14 3E-19 140.2 11.5 169 82-299 42-242 (484)
70 PRK14962 DNA polymerase III su 99.6 2.6E-14 5.7E-19 139.7 13.3 171 82-301 38-240 (472)
71 PRK04195 replication factor C 99.6 2.3E-14 5E-19 141.2 12.6 170 82-299 41-221 (482)
72 PRK10787 DNA-binding ATP-depen 99.5 3.1E-14 6.8E-19 146.7 11.3 200 82-302 351-581 (784)
73 PRK14961 DNA polymerase III su 99.5 8.7E-14 1.9E-18 132.4 13.3 171 82-301 40-242 (363)
74 PRK07003 DNA polymerase III su 99.5 3.5E-14 7.6E-19 142.7 10.9 155 82-281 40-226 (830)
75 PRK06645 DNA polymerase III su 99.5 7.4E-14 1.6E-18 137.2 12.9 173 82-300 45-253 (507)
76 PRK13341 recombination factor 99.5 3.6E-14 7.7E-19 144.8 10.7 175 82-304 54-248 (725)
77 TIGR02640 gas_vesic_GvpN gas v 99.5 8.4E-14 1.8E-18 126.7 11.8 198 79-306 20-260 (262)
78 PRK12323 DNA polymerase III su 99.5 2E-14 4.3E-19 142.7 8.1 166 71-281 10-231 (700)
79 PRK06893 DNA replication initi 99.5 6.4E-14 1.4E-18 125.0 10.7 175 83-301 42-228 (229)
80 PRK14088 dnaA chromosomal repl 99.5 8.1E-14 1.8E-18 135.6 11.8 188 82-305 132-334 (440)
81 PTZ00112 origin recognition co 99.5 1.4E-13 3E-18 139.4 13.1 184 84-305 785-1008(1164)
82 PLN03025 replication factor C 99.5 6E-14 1.3E-18 131.2 9.8 167 82-298 36-218 (319)
83 PRK14958 DNA polymerase III su 99.5 8.9E-14 1.9E-18 137.3 11.2 181 71-300 10-241 (509)
84 PRK14960 DNA polymerase III su 99.5 8.4E-14 1.8E-18 138.6 10.4 169 82-299 39-239 (702)
85 PRK07994 DNA polymerase III su 99.5 1.6E-13 3.4E-18 137.8 11.6 180 72-300 11-241 (647)
86 PRK14086 dnaA chromosomal repl 99.5 4E-13 8.6E-18 133.5 14.0 187 82-305 316-517 (617)
87 TIGR03420 DnaA_homol_Hda DnaA 99.5 1.6E-13 3.5E-18 121.6 10.1 175 80-300 38-225 (226)
88 PRK12402 replication factor C 99.5 4.3E-13 9.3E-18 125.9 13.1 176 82-301 38-247 (337)
89 PRK14964 DNA polymerase III su 99.5 2.7E-13 5.9E-18 132.4 11.5 170 82-300 37-238 (491)
90 PRK05563 DNA polymerase III su 99.5 5.3E-13 1.1E-17 133.4 13.4 168 82-298 40-239 (559)
91 PRK14963 DNA polymerase III su 99.5 5.9E-13 1.3E-17 131.2 13.4 168 83-300 39-237 (504)
92 PRK08691 DNA polymerase III su 99.5 3.1E-13 6.7E-18 135.5 11.1 171 82-301 40-242 (709)
93 PRK14949 DNA polymerase III su 99.5 3.6E-13 7.8E-18 137.7 11.6 154 82-280 40-225 (944)
94 PRK12422 chromosomal replicati 99.5 5.7E-13 1.2E-17 129.6 12.5 188 82-305 143-345 (445)
95 PHA02544 44 clamp loader, smal 99.4 4.1E-13 8.8E-18 125.2 10.8 125 82-246 45-173 (316)
96 TIGR02397 dnaX_nterm DNA polym 99.4 9.3E-13 2E-17 124.6 12.1 170 82-300 38-239 (355)
97 PRK14951 DNA polymerase III su 99.4 9.4E-13 2E-17 131.9 12.4 170 82-300 40-246 (618)
98 PRK14969 DNA polymerase III su 99.4 8.4E-13 1.8E-17 131.1 11.7 171 82-301 40-242 (527)
99 KOG0989|consensus 99.4 5.6E-13 1.2E-17 120.4 8.2 157 69-266 28-222 (346)
100 PRK14957 DNA polymerase III su 99.4 1.1E-12 2.4E-17 129.8 11.0 169 82-299 40-240 (546)
101 PRK08084 DNA replication initi 99.4 1.6E-12 3.6E-17 116.4 11.2 175 82-301 47-234 (235)
102 PRK05342 clpX ATP-dependent pr 99.4 1.7E-12 3.6E-17 125.0 11.9 192 81-285 109-380 (412)
103 COG0714 MoxR-like ATPases [Gen 99.4 1E-12 2.3E-17 123.4 10.1 199 80-308 43-301 (329)
104 PRK14959 DNA polymerase III su 99.4 1.5E-12 3.1E-17 130.0 10.4 170 82-300 40-241 (624)
105 PRK07133 DNA polymerase III su 99.4 3.1E-12 6.6E-17 129.4 12.8 175 82-299 42-239 (725)
106 PRK14087 dnaA chromosomal repl 99.4 2E-12 4.4E-17 126.1 10.8 186 82-304 143-349 (450)
107 TIGR00382 clpX endopeptidase C 99.4 2.5E-12 5.4E-17 123.3 11.1 190 81-286 117-387 (413)
108 PRK08727 hypothetical protein; 99.4 4.9E-12 1.1E-16 113.2 12.2 174 82-301 43-229 (233)
109 TIGR01650 PD_CobS cobaltochela 99.4 4.4E-13 9.5E-18 124.2 5.4 176 80-281 64-282 (327)
110 PRK14970 DNA polymerase III su 99.4 2.3E-12 4.9E-17 122.8 10.3 170 82-300 41-230 (367)
111 PRK08903 DnaA regulatory inact 99.4 7.2E-12 1.6E-16 111.4 12.8 170 81-301 43-224 (227)
112 PRK14965 DNA polymerase III su 99.4 2.6E-12 5.7E-17 128.9 10.9 169 82-299 40-240 (576)
113 COG1474 CDC6 Cdc6-related prot 99.4 1.2E-11 2.7E-16 117.3 14.8 187 83-304 45-266 (366)
114 PRK07764 DNA polymerase III su 99.4 3.2E-12 6.9E-17 132.1 11.1 168 82-297 39-240 (824)
115 PRK14953 DNA polymerase III su 99.4 8.8E-12 1.9E-16 122.5 13.3 170 82-300 40-241 (486)
116 PRK14952 DNA polymerase III su 99.3 4E-12 8.8E-17 126.9 10.7 169 83-299 38-240 (584)
117 PRK05896 DNA polymerase III su 99.3 3.8E-12 8.1E-17 126.5 10.0 168 82-298 40-239 (605)
118 PRK00440 rfc replication facto 99.3 8.2E-12 1.8E-16 116.2 11.8 169 82-300 40-223 (319)
119 PRK08451 DNA polymerase III su 99.3 1E-11 2.3E-16 122.4 12.9 178 71-298 8-237 (535)
120 PRK11034 clpA ATP-dependent Cl 99.3 6.1E-12 1.3E-16 129.1 11.6 177 81-283 489-715 (758)
121 PRK05642 DNA replication initi 99.3 1.4E-11 3.1E-16 110.3 11.5 175 82-301 47-233 (234)
122 PRK06647 DNA polymerase III su 99.3 1.5E-11 3.2E-16 122.8 12.4 169 82-299 40-240 (563)
123 TIGR02903 spore_lon_C ATP-depe 99.3 3E-11 6.5E-16 122.1 14.6 206 82-303 177-430 (615)
124 PRK13407 bchI magnesium chelat 99.3 5.8E-12 1.3E-16 118.0 8.7 147 138-309 130-312 (334)
125 PRK06620 hypothetical protein; 99.3 2.1E-11 4.6E-16 107.6 11.8 159 83-300 47-213 (214)
126 PRK06305 DNA polymerase III su 99.3 1.5E-11 3.2E-16 120.1 11.4 169 82-299 41-242 (451)
127 PRK14955 DNA polymerase III su 99.3 8.6E-12 1.9E-16 120.1 9.5 174 82-300 40-254 (397)
128 PRK09111 DNA polymerase III su 99.3 2.3E-11 4.9E-16 122.1 12.9 177 82-301 48-255 (598)
129 TIGR00390 hslU ATP-dependent p 99.3 2.3E-11 5E-16 115.7 11.6 210 82-307 49-434 (441)
130 PRK14948 DNA polymerase III su 99.3 3.8E-11 8.2E-16 121.1 13.4 152 82-278 40-225 (620)
131 PRK05201 hslU ATP-dependent pr 99.3 2.8E-11 6.1E-16 115.2 10.9 211 81-307 51-436 (443)
132 TIGR02030 BchI-ChlI magnesium 99.3 1.6E-11 3.5E-16 115.2 9.2 150 137-310 132-316 (337)
133 PRK13531 regulatory ATPase Rav 99.3 4.3E-11 9.3E-16 116.0 11.8 200 80-307 39-287 (498)
134 PRK14950 DNA polymerase III su 99.3 4.9E-11 1.1E-15 120.2 12.4 169 82-299 40-241 (585)
135 PRK14954 DNA polymerase III su 99.2 5.2E-11 1.1E-15 119.8 12.0 180 82-300 40-254 (620)
136 PRK07940 DNA polymerase III su 99.2 6.5E-11 1.4E-15 113.5 11.3 146 82-274 38-213 (394)
137 TIGR02639 ClpA ATP-dependent C 99.2 5.7E-11 1.2E-15 122.7 11.5 175 82-284 486-712 (731)
138 PRK09087 hypothetical protein; 99.2 8.2E-11 1.8E-15 104.8 11.0 168 82-303 46-222 (226)
139 CHL00081 chlI Mg-protoporyphyr 99.2 1.1E-10 2.4E-15 109.7 11.7 150 137-310 145-329 (350)
140 COG0593 DnaA ATPase involved i 99.2 2.4E-10 5.2E-15 108.8 12.9 188 82-306 115-316 (408)
141 TIGR02031 BchD-ChlD magnesium 99.2 1.8E-10 3.8E-15 116.0 12.4 205 80-310 16-265 (589)
142 PRK04132 replication factor C 99.2 3.4E-10 7.3E-15 116.8 14.5 154 82-280 566-736 (846)
143 PF00308 Bac_DnaA: Bacterial d 99.2 9.8E-11 2.1E-15 103.8 8.2 164 82-281 36-214 (219)
144 COG0542 clpA ATP-binding subun 99.1 3.4E-10 7.3E-15 114.9 12.7 170 82-283 194-393 (786)
145 TIGR02442 Cob-chelat-sub cobal 99.1 1.4E-10 3E-15 117.9 9.9 203 81-309 26-310 (633)
146 PF07726 AAA_3: ATPase family 99.1 5.1E-12 1.1E-16 101.4 -0.8 111 82-225 1-130 (131)
147 cd00009 AAA The AAA+ (ATPases 99.1 1.1E-10 2.5E-15 94.5 6.8 121 81-232 20-151 (151)
148 COG1224 TIP49 DNA helicase TIP 99.1 5.4E-10 1.2E-14 103.1 11.6 103 202-307 321-436 (450)
149 PHA02244 ATPase-like protein 99.1 4E-10 8.6E-15 105.9 10.6 131 82-242 121-269 (383)
150 PRK14971 DNA polymerase III su 99.1 5.5E-10 1.2E-14 112.7 12.1 168 70-282 10-229 (614)
151 COG2812 DnaX DNA polymerase II 99.1 8.1E-10 1.7E-14 108.1 12.7 174 71-283 10-228 (515)
152 TIGR03015 pepcterm_ATPase puta 99.1 5.7E-10 1.2E-14 101.5 10.8 85 217-304 178-267 (269)
153 smart00382 AAA ATPases associa 99.1 4.5E-10 9.7E-15 90.1 7.2 121 82-233 4-147 (148)
154 TIGR03345 VI_ClpV1 type VI sec 99.0 1.7E-09 3.8E-14 113.0 12.4 172 83-283 599-830 (852)
155 TIGR00764 lon_rel lon-related 99.0 1.2E-09 2.5E-14 110.4 10.6 107 198-306 265-394 (608)
156 TIGR00678 holB DNA polymerase 99.0 1.5E-09 3.2E-14 93.8 9.5 137 82-266 16-183 (188)
157 TIGR03346 chaperone_ClpB ATP-d 99.0 2.1E-09 4.6E-14 112.7 12.0 176 82-285 597-827 (852)
158 KOG1514|consensus 99.0 1.1E-08 2.4E-13 101.5 14.6 192 82-307 424-659 (767)
159 PF07728 AAA_5: AAA domain (dy 99.0 2.6E-10 5.6E-15 93.5 2.4 121 82-224 1-139 (139)
160 PRK11331 5-methylcytosine-spec 99.0 1.7E-09 3.8E-14 104.1 8.2 134 82-232 196-357 (459)
161 smart00350 MCM minichromosome 99.0 3.1E-09 6.7E-14 105.5 10.1 195 82-305 238-506 (509)
162 KOG0741|consensus 98.9 1.8E-09 3.9E-14 103.9 7.8 139 82-244 540-684 (744)
163 PRK10865 protein disaggregatio 98.9 7.3E-09 1.6E-13 108.5 12.3 177 81-283 599-828 (857)
164 CHL00095 clpC Clp protease ATP 98.9 5.7E-09 1.2E-13 109.2 11.2 171 83-281 542-779 (821)
165 PF05673 DUF815: Protein of un 98.9 1.9E-08 4.2E-13 89.4 11.6 155 82-277 54-243 (249)
166 COG0470 HolB ATPase involved i 98.9 1.5E-08 3.2E-13 94.4 11.3 122 82-243 26-178 (325)
167 TIGR00368 Mg chelatase-related 98.9 1.6E-08 3.4E-13 99.8 11.8 140 138-301 297-497 (499)
168 KOG1969|consensus 98.9 4.3E-08 9.4E-13 97.7 14.6 177 82-286 328-518 (877)
169 COG0542 clpA ATP-binding subun 98.8 2.6E-09 5.6E-14 108.6 5.4 171 82-280 523-751 (786)
170 PRK09112 DNA polymerase III su 98.8 1.7E-08 3.7E-13 95.5 10.4 116 123-278 124-243 (351)
171 PRK07471 DNA polymerase III su 98.8 2.1E-08 4.6E-13 95.3 9.8 111 123-275 124-238 (365)
172 PRK05707 DNA polymerase III su 98.8 2.1E-08 4.5E-13 94.1 9.3 143 80-266 22-195 (328)
173 PF07724 AAA_2: AAA domain (Cd 98.8 4.4E-09 9.6E-14 89.7 4.2 116 83-213 6-132 (171)
174 KOG0991|consensus 98.8 7.2E-09 1.6E-13 90.8 5.1 163 69-277 19-213 (333)
175 PRK09862 putative ATP-dependen 98.8 7.2E-08 1.6E-12 94.9 12.1 141 138-302 296-491 (506)
176 PF05621 TniB: Bacterial TniB 98.7 1.2E-07 2.5E-12 86.9 9.8 185 83-299 64-285 (302)
177 PRK05564 DNA polymerase III su 98.7 5.7E-08 1.2E-12 90.7 7.8 140 82-266 28-182 (313)
178 PRK07399 DNA polymerase III su 98.7 1E-07 2.2E-12 89.0 9.0 112 124-277 108-223 (314)
179 PRK13406 bchD magnesium chelat 98.6 1.1E-07 2.4E-12 95.4 9.4 203 81-309 26-256 (584)
180 COG1219 ClpX ATP-dependent pro 98.6 6.3E-08 1.4E-12 88.4 6.6 90 82-171 99-200 (408)
181 KOG0745|consensus 98.6 6E-08 1.3E-12 91.7 5.2 140 82-234 228-387 (564)
182 KOG2227|consensus 98.5 6.9E-07 1.5E-11 85.4 10.7 191 82-305 177-417 (529)
183 PF06068 TIP49: TIP49 C-termin 98.5 1.7E-07 3.8E-12 87.7 6.5 49 200-251 306-366 (398)
184 TIGR02329 propionate_PrpR prop 98.5 1.6E-07 3.5E-12 93.3 6.4 185 82-297 237-464 (526)
185 KOG2035|consensus 98.5 9E-07 1.9E-11 79.6 10.3 175 82-303 36-258 (351)
186 PRK15424 propionate catabolism 98.5 1.7E-07 3.6E-12 93.3 5.5 186 82-296 244-478 (538)
187 TIGR02974 phageshock_pspF psp 98.5 3.8E-07 8.3E-12 85.8 7.3 174 81-283 23-233 (329)
188 TIGR00602 rad24 checkpoint pro 98.5 6E-07 1.3E-11 90.7 9.2 158 83-278 113-323 (637)
189 COG1221 PspF Transcriptional r 98.4 1.2E-07 2.6E-12 90.3 3.5 173 82-284 103-310 (403)
190 TIGR01817 nifA Nif-specific re 98.4 7.4E-07 1.6E-11 89.2 9.3 184 82-297 221-439 (534)
191 PRK06964 DNA polymerase III su 98.4 4.6E-07 1E-11 85.3 6.4 86 122-245 114-203 (342)
192 PRK11608 pspF phage shock prot 98.4 6.6E-07 1.4E-11 84.1 7.2 172 82-282 31-239 (326)
193 PRK08116 hypothetical protein; 98.4 3.8E-07 8.3E-12 83.3 5.3 125 82-244 116-258 (268)
194 PRK11388 DNA-binding transcrip 98.4 2.2E-06 4.9E-11 87.6 11.0 187 82-300 350-568 (638)
195 PRK08058 DNA polymerase III su 98.4 1.5E-06 3.3E-11 81.7 9.0 120 82-244 30-180 (329)
196 COG1239 ChlI Mg-chelatase subu 98.4 3.8E-06 8.3E-11 79.7 11.6 145 138-309 146-328 (423)
197 KOG0990|consensus 98.3 3.9E-06 8.5E-11 76.9 10.1 133 75-249 55-206 (360)
198 PF01078 Mg_chelatase: Magnesi 98.3 1E-07 2.2E-12 83.0 -0.2 75 138-236 108-205 (206)
199 PRK08699 DNA polymerase III su 98.3 1.1E-06 2.4E-11 82.4 6.2 129 77-244 18-183 (325)
200 PRK08769 DNA polymerase III su 98.3 5.3E-06 1.2E-10 77.5 10.5 105 122-269 95-203 (319)
201 PRK06871 DNA polymerase III su 98.3 2.8E-06 6E-11 79.5 8.5 122 82-245 26-178 (325)
202 PRK07993 DNA polymerase III su 98.3 2E-06 4.4E-11 80.9 7.3 122 82-244 26-178 (334)
203 PRK10820 DNA-binding transcrip 98.3 4.9E-06 1.1E-10 83.0 10.4 182 72-282 199-436 (520)
204 COG2607 Predicted ATPase (AAA+ 98.3 1.3E-05 2.8E-10 70.9 11.6 154 82-277 87-275 (287)
205 PTZ00111 DNA replication licen 98.3 3.5E-06 7.5E-11 87.4 9.2 39 267-305 768-806 (915)
206 PRK07952 DNA replication prote 98.3 1.4E-06 3.1E-11 78.4 5.7 66 82-149 101-175 (244)
207 PF12774 AAA_6: Hydrolytic ATP 98.2 4.9E-06 1.1E-10 74.3 9.0 135 84-243 36-177 (231)
208 PRK08181 transposase; Validate 98.2 1.4E-06 3E-11 79.5 5.2 82 82-174 108-196 (269)
209 COG3829 RocR Transcriptional r 98.2 1.9E-06 4E-11 84.1 6.1 179 72-281 240-477 (560)
210 PRK15429 formate hydrogenlyase 98.2 5.2E-06 1.1E-10 85.6 9.3 171 82-282 401-608 (686)
211 PF00158 Sigma54_activat: Sigm 98.2 5.1E-06 1.1E-10 70.6 7.4 103 81-210 23-143 (168)
212 PRK05022 anaerobic nitric oxid 98.2 5.3E-06 1.2E-10 82.6 8.7 172 82-284 212-421 (509)
213 PF12775 AAA_7: P-loop contain 98.2 3.6E-06 7.7E-11 77.1 6.8 140 82-247 35-194 (272)
214 smart00763 AAA_PrkA PrkA AAA d 98.1 8.5E-06 1.8E-10 76.8 8.4 51 82-132 80-144 (361)
215 PF01637 Arch_ATPase: Archaeal 98.1 1.8E-06 3.9E-11 75.9 3.6 120 122-273 103-232 (234)
216 PRK12377 putative replication 98.1 3E-06 6.4E-11 76.5 5.0 81 82-173 103-191 (248)
217 COG0606 Predicted ATPase with 98.1 4.5E-06 9.7E-11 80.4 6.5 140 138-301 285-483 (490)
218 PF13173 AAA_14: AAA domain 98.1 1E-05 2.2E-10 65.4 7.0 64 83-148 5-73 (128)
219 PF13177 DNA_pol3_delta2: DNA 98.1 9.1E-06 2E-10 68.6 6.8 111 82-233 21-161 (162)
220 PRK06090 DNA polymerase III su 98.1 7.9E-06 1.7E-10 76.3 6.9 122 82-244 27-178 (319)
221 PRK09183 transposase/IS protei 98.1 6.3E-06 1.4E-10 74.9 5.6 67 82-149 104-177 (259)
222 cd01120 RecA-like_NTPases RecA 98.0 1.4E-05 3E-10 66.1 7.2 93 83-175 2-124 (165)
223 COG2204 AtoC Response regulato 98.0 7.1E-06 1.5E-10 79.7 6.2 169 82-283 166-374 (464)
224 PRK06921 hypothetical protein; 98.0 9.3E-06 2E-10 74.1 6.2 64 81-147 118-188 (266)
225 PRK06835 DNA replication prote 98.0 9E-06 2E-10 76.3 6.1 67 81-149 184-259 (329)
226 PRK06526 transposase; Provisio 98.0 4.3E-06 9.3E-11 75.8 3.7 73 75-149 93-172 (254)
227 PRK15115 response regulator Gl 98.0 9.7E-06 2.1E-10 79.2 6.1 176 82-297 159-378 (444)
228 PF05729 NACHT: NACHT domain 98.0 5.7E-05 1.2E-09 62.7 9.9 86 133-248 78-165 (166)
229 KOG1968|consensus 97.9 2.1E-05 4.5E-10 82.0 7.8 159 83-281 360-534 (871)
230 PF05707 Zot: Zonular occluden 97.9 5.3E-06 1.2E-10 72.0 2.6 68 136-233 79-146 (193)
231 PF03215 Rad17: Rad17 cell cyc 97.9 5.5E-05 1.2E-09 75.1 10.0 167 82-284 47-269 (519)
232 PF14532 Sigma54_activ_2: Sigm 97.9 5.6E-06 1.2E-10 67.8 2.5 67 82-173 23-95 (138)
233 PRK08939 primosomal protein Dn 97.9 1.5E-05 3.2E-10 74.2 5.0 65 82-148 158-229 (306)
234 TIGR02915 PEP_resp_reg putativ 97.9 6.8E-05 1.5E-09 73.2 9.6 173 82-283 164-372 (445)
235 TIGR01818 ntrC nitrogen regula 97.8 1.8E-05 3.9E-10 77.7 5.0 188 82-300 159-381 (463)
236 PF01695 IstB_IS21: IstB-like 97.8 1.2E-05 2.6E-10 69.0 3.3 64 82-147 49-119 (178)
237 PF13401 AAA_22: AAA domain; P 97.8 4.2E-05 9.1E-10 61.4 6.1 68 82-149 6-100 (131)
238 COG1484 DnaC DNA replication p 97.8 2.6E-05 5.6E-10 70.7 5.3 64 80-148 105-179 (254)
239 PRK11361 acetoacetate metaboli 97.8 8.5E-05 1.8E-09 72.7 8.8 183 82-297 168-387 (457)
240 PF00493 MCM: MCM2/3/5 family 97.8 1.5E-05 3.3E-10 75.0 3.0 194 82-305 59-328 (331)
241 PRK10923 glnG nitrogen regulat 97.7 5.8E-05 1.3E-09 74.2 6.9 186 82-299 163-384 (469)
242 COG5271 MDN1 AAA ATPase contai 97.7 7E-05 1.5E-09 80.8 7.1 141 82-248 1545-1705(4600)
243 COG3267 ExeA Type II secretory 97.7 0.00087 1.9E-08 60.0 12.9 183 82-297 53-267 (269)
244 KOG1942|consensus 97.7 0.00042 9.1E-09 63.2 10.4 104 202-308 326-443 (456)
245 COG3604 FhlA Transcriptional r 97.7 3.6E-05 7.9E-10 74.5 3.7 169 82-283 248-456 (550)
246 PRK10365 transcriptional regul 97.6 0.00024 5.2E-09 69.2 8.7 186 82-297 164-383 (441)
247 KOG1051|consensus 97.5 0.00013 2.9E-09 75.8 6.3 103 82-210 593-710 (898)
248 TIGR02237 recomb_radB DNA repa 97.5 0.00012 2.6E-09 64.1 5.1 69 82-150 14-111 (209)
249 KOG1970|consensus 97.5 0.00067 1.5E-08 66.5 10.5 28 82-109 112-142 (634)
250 KOG2228|consensus 97.5 0.0021 4.5E-08 59.8 12.7 132 82-246 51-219 (408)
251 cd00983 recA RecA is a bacter 97.5 0.00022 4.7E-09 66.8 5.9 70 82-151 57-148 (325)
252 KOG1051|consensus 97.5 0.00037 8E-09 72.6 8.1 167 85-283 213-410 (898)
253 TIGR02012 tigrfam_recA protein 97.4 0.00025 5.4E-09 66.2 5.5 99 82-180 57-180 (321)
254 PF00910 RNA_helicase: RNA hel 97.4 0.00024 5.2E-09 55.6 4.5 12 84-95 2-13 (107)
255 cd01124 KaiC KaiC is a circadi 97.4 0.0015 3.1E-08 55.8 9.5 25 126-150 85-109 (187)
256 PRK11823 DNA repair protein Ra 97.4 0.00077 1.7E-08 66.1 8.6 71 82-152 82-172 (446)
257 KOG2680|consensus 97.3 0.0013 2.7E-08 60.3 8.9 96 211-309 339-435 (454)
258 PRK07132 DNA polymerase III su 97.3 0.0012 2.5E-08 61.4 8.9 118 82-244 20-160 (299)
259 PF03969 AFG1_ATPase: AFG1-lik 97.3 0.0002 4.3E-09 68.2 3.9 14 82-95 64-77 (362)
260 PRK05917 DNA polymerase III su 97.3 0.00019 4.1E-09 66.1 3.3 111 82-233 21-154 (290)
261 PF00931 NB-ARC: NB-ARC domain 97.3 0.00063 1.4E-08 62.1 6.6 70 201-275 129-202 (287)
262 CHL00195 ycf46 Ycf46; Provisio 97.2 0.014 2.9E-07 57.9 15.8 124 137-301 82-206 (489)
263 TIGR01618 phage_P_loop phage n 97.2 0.001 2.2E-08 59.0 7.1 94 83-176 15-131 (220)
264 cd01121 Sms Sms (bacterial rad 97.2 0.0016 3.4E-08 62.3 8.6 71 82-152 84-174 (372)
265 TIGR02688 conserved hypothetic 97.2 0.0011 2.4E-08 63.8 7.5 47 262-308 391-438 (449)
266 PF14516 AAA_35: AAA-like doma 97.2 0.024 5.1E-07 53.4 16.5 168 83-278 34-242 (331)
267 PRK09361 radB DNA repair and r 97.2 0.00058 1.3E-08 60.4 5.1 69 82-151 25-122 (225)
268 COG1241 MCM2 Predicted ATPase 97.2 0.0012 2.7E-08 67.1 7.9 39 267-305 556-594 (682)
269 KOG0478|consensus 97.2 0.0025 5.4E-08 64.0 9.7 83 138-244 528-624 (804)
270 KOG0480|consensus 97.1 0.0017 3.7E-08 64.7 8.2 144 138-305 444-645 (764)
271 PRK14700 recombination factor 97.1 0.0029 6.4E-08 58.1 9.1 101 200-307 7-119 (300)
272 COG5245 DYN1 Dynein, heavy cha 97.1 0.0027 5.8E-08 68.7 9.5 178 82-284 1496-1717(3164)
273 PRK05818 DNA polymerase III su 96.9 0.002 4.2E-08 58.3 6.0 59 137-233 89-147 (261)
274 PRK09354 recA recombinase A; P 96.9 0.0014 3E-08 61.9 4.8 70 82-151 62-153 (349)
275 cd01394 radB RadB. The archaea 96.8 0.0028 6.2E-08 55.7 6.4 28 83-110 22-55 (218)
276 COG1067 LonB Predicted ATP-dep 96.8 0.015 3.2E-07 59.3 12.1 154 138-307 227-403 (647)
277 PRK08118 topology modulation p 96.8 0.0021 4.6E-08 54.4 5.0 41 204-247 62-102 (167)
278 PLN03210 Resistant to P. syrin 96.7 0.0051 1.1E-07 67.3 8.6 60 203-268 326-389 (1153)
279 TIGR02858 spore_III_AA stage I 96.6 0.0049 1.1E-07 56.4 6.6 64 82-145 113-203 (270)
280 cd01131 PilT Pilus retraction 96.6 0.0011 2.4E-08 57.7 2.3 65 81-145 2-83 (198)
281 PRK04296 thymidine kinase; Pro 96.6 0.0048 1E-07 53.4 5.9 65 83-148 5-90 (190)
282 KOG1942|consensus 96.6 0.00078 1.7E-08 61.5 0.8 50 82-132 66-120 (456)
283 COG1220 HslU ATP-dependent pro 96.5 0.0058 1.3E-07 56.9 6.3 104 122-243 238-346 (444)
284 KOG2170|consensus 96.5 0.0081 1.8E-07 55.1 7.1 63 84-149 114-191 (344)
285 COG1066 Sms Predicted ATP-depe 96.5 0.0057 1.2E-07 58.4 6.3 153 74-249 80-259 (456)
286 PRK07261 topology modulation p 96.5 0.003 6.5E-08 53.7 4.1 42 204-247 61-102 (171)
287 PHA00729 NTP-binding motif con 96.5 0.0012 2.7E-08 58.5 1.7 20 83-102 20-42 (226)
288 PF13207 AAA_17: AAA domain; P 96.5 0.00067 1.5E-08 53.7 -0.1 28 83-110 2-32 (121)
289 PRK09376 rho transcription ter 96.5 0.005 1.1E-07 58.9 5.8 45 3-47 51-100 (416)
290 PF10236 DAP3: Mitochondrial r 96.5 0.064 1.4E-06 50.1 13.1 132 125-274 142-308 (309)
291 PRK08533 flagellar accessory p 96.5 0.0084 1.8E-07 53.5 6.8 68 82-149 26-130 (230)
292 COG1618 Predicted nucleotide k 96.4 0.011 2.3E-07 49.6 6.6 22 126-148 91-112 (179)
293 PRK13949 shikimate kinase; Pro 96.4 0.0069 1.5E-07 51.4 5.4 27 83-109 4-33 (169)
294 TIGR00416 sms DNA repair prote 96.3 0.0096 2.1E-07 58.5 6.9 70 82-151 96-185 (454)
295 PRK07276 DNA polymerase III su 96.3 0.11 2.4E-06 48.0 13.4 83 122-243 86-172 (290)
296 cd00544 CobU Adenosylcobinamid 96.2 0.011 2.3E-07 50.3 6.0 92 83-176 2-114 (169)
297 COG1116 TauB ABC-type nitrate/ 96.2 0.0041 8.9E-08 55.6 3.5 18 128-145 140-157 (248)
298 cd01393 recA_like RecA is a b 96.2 0.0061 1.3E-07 53.7 4.7 44 134-178 112-155 (226)
299 COG3283 TyrR Transcriptional r 96.2 0.016 3.5E-07 54.5 7.2 102 82-210 229-343 (511)
300 cd03283 ABC_MutS-like MutS-lik 96.2 0.013 2.8E-07 51.1 6.2 24 123-146 92-115 (199)
301 PF13671 AAA_33: AAA domain; P 96.1 0.006 1.3E-07 49.5 3.8 35 83-119 2-39 (143)
302 PRK14722 flhF flagellar biosyn 96.1 0.0042 9.1E-08 59.3 3.1 109 78-219 135-267 (374)
303 COG0703 AroK Shikimate kinase 96.1 0.0021 4.5E-08 54.6 0.9 44 83-131 5-51 (172)
304 cd01128 rho_factor Transcripti 96.1 0.021 4.5E-07 51.6 7.4 70 82-151 18-118 (249)
305 PF13604 AAA_30: AAA domain; P 96.1 0.0047 1E-07 53.7 3.1 67 83-149 21-106 (196)
306 COG1373 Predicted ATPase (AAA+ 96.1 0.12 2.5E-06 50.1 13.0 119 83-240 40-161 (398)
307 PHA00350 putative assembly pro 96.1 0.004 8.6E-08 59.8 2.8 21 204-226 138-158 (399)
308 KOG3928|consensus 96.1 0.051 1.1E-06 52.0 10.0 50 227-277 405-458 (461)
309 PRK00131 aroK shikimate kinase 96.0 0.0071 1.5E-07 50.7 3.9 35 83-119 7-44 (175)
310 PRK09519 recA DNA recombinatio 96.0 0.0099 2.1E-07 61.7 5.6 70 82-151 62-153 (790)
311 PF06745 KaiC: KaiC; InterPro 96.0 0.027 5.8E-07 49.8 7.6 26 123-148 102-127 (226)
312 PF05272 VirE: Virulence-assoc 96.0 0.0093 2E-07 52.0 4.5 110 83-232 55-169 (198)
313 TIGR01420 pilT_fam pilus retra 96.0 0.0042 9.1E-08 58.8 2.4 66 81-146 123-205 (343)
314 PRK13765 ATP-dependent proteas 95.9 0.046 9.9E-07 55.9 9.8 103 198-302 274-399 (637)
315 cd01123 Rad51_DMC1_radA Rad51_ 95.9 0.0084 1.8E-07 53.2 4.1 46 132-178 110-156 (235)
316 cd01122 GP4d_helicase GP4d_hel 95.9 0.018 3.9E-07 52.3 6.3 20 132-151 136-155 (271)
317 PRK13695 putative NTPase; Prov 95.9 0.037 8.1E-07 46.8 7.8 12 84-95 4-15 (174)
318 PRK04040 adenylate kinase; Pro 95.9 0.055 1.2E-06 46.7 8.9 24 83-106 5-33 (188)
319 PHA00012 I assembly protein 95.9 0.014 3E-07 54.4 5.2 55 137-219 82-136 (361)
320 KOG2383|consensus 95.9 0.0082 1.8E-07 57.1 3.7 70 200-280 223-297 (467)
321 cd00984 DnaB_C DnaB helicase C 95.8 0.02 4.4E-07 50.9 6.2 28 82-109 15-49 (242)
322 PRK05800 cobU adenosylcobinami 95.8 0.015 3.3E-07 49.4 5.0 91 83-176 4-114 (170)
323 PRK14532 adenylate kinase; Pro 95.8 0.0041 8.8E-08 53.4 1.5 33 83-117 3-38 (188)
324 PRK05973 replicative DNA helic 95.8 0.038 8.2E-07 49.6 7.6 14 82-95 66-79 (237)
325 TIGR00767 rho transcription te 95.8 0.062 1.3E-06 51.7 9.4 47 3-49 51-102 (415)
326 PRK00625 shikimate kinase; Pro 95.8 0.0051 1.1E-07 52.5 1.9 27 83-109 3-32 (173)
327 PHA02624 large T antigen; Prov 95.7 0.001 2.2E-08 66.6 -3.0 124 83-232 434-561 (647)
328 smart00487 DEXDc DEAD-like hel 95.7 0.022 4.7E-07 47.8 5.4 14 82-95 26-39 (201)
329 TIGR01359 UMP_CMP_kin_fam UMP- 95.7 0.0037 8E-08 53.2 0.6 33 83-117 2-37 (183)
330 PRK03839 putative kinase; Prov 95.6 0.003 6.4E-08 53.9 -0.0 27 83-109 3-32 (180)
331 PRK04841 transcriptional regul 95.6 0.061 1.3E-06 57.1 9.8 97 135-268 120-219 (903)
332 TIGR02525 plasmid_TraJ plasmid 95.6 0.0076 1.6E-07 57.6 2.7 66 81-146 150-235 (372)
333 COG4619 ABC-type uncharacteriz 95.6 0.019 4.1E-07 48.7 4.7 60 135-232 150-209 (223)
334 PRK12339 2-phosphoglycerate ki 95.6 0.07 1.5E-06 46.5 8.4 30 83-114 6-38 (197)
335 PRK00771 signal recognition pa 95.6 0.046 1E-06 53.4 8.0 49 255-305 277-334 (437)
336 KOG2543|consensus 95.6 0.055 1.2E-06 51.3 8.0 31 83-113 33-66 (438)
337 PRK06762 hypothetical protein; 95.6 0.013 2.9E-07 49.0 3.7 33 83-115 5-40 (166)
338 COG1102 Cmk Cytidylate kinase 95.6 0.0052 1.1E-07 51.4 1.1 23 85-107 5-30 (179)
339 TIGR02238 recomb_DMC1 meiotic 95.5 0.042 9.2E-07 51.4 7.2 45 133-178 188-232 (313)
340 PF09848 DUF2075: Uncharacteri 95.5 0.018 3.8E-07 54.7 4.6 19 83-101 4-25 (352)
341 PRK06067 flagellar accessory p 95.5 0.022 4.8E-07 50.6 5.0 68 82-149 27-133 (234)
342 cd00464 SK Shikimate kinase (S 95.4 0.0082 1.8E-07 49.4 1.9 36 83-120 2-40 (154)
343 COG3854 SpoIIIAA ncharacterize 95.4 0.023 5E-07 50.4 4.5 65 83-147 140-229 (308)
344 KOG3347|consensus 95.3 0.0046 1E-07 51.1 0.0 27 83-109 10-39 (176)
345 TIGR03878 thermo_KaiC_2 KaiC d 95.3 0.042 9E-07 49.9 6.3 14 82-95 38-51 (259)
346 cd00046 DEXDc DEAD-like helica 95.3 0.011 2.4E-07 46.5 2.2 16 136-151 103-118 (144)
347 cd03216 ABC_Carb_Monos_I This 95.3 0.028 6.1E-07 47.2 4.7 83 82-174 28-128 (163)
348 COG1485 Predicted ATPase [Gene 95.2 0.032 6.9E-07 52.4 5.2 14 82-95 67-80 (367)
349 PRK13947 shikimate kinase; Pro 95.2 0.0052 1.1E-07 51.7 0.0 36 83-120 4-42 (171)
350 cd01125 repA Hexameric Replica 95.2 0.087 1.9E-06 47.1 7.8 25 124-148 99-123 (239)
351 TIGR03877 thermo_KaiC_1 KaiC d 95.2 0.068 1.5E-06 47.8 7.1 29 82-110 23-57 (237)
352 PF00154 RecA: recA bacterial 95.1 0.048 1E-06 51.0 6.2 98 83-180 56-178 (322)
353 PF10443 RNA12: RNA12 protein; 95.1 0.54 1.2E-05 45.5 13.3 43 204-248 186-231 (431)
354 PHA02774 E1; Provisional 95.1 0.028 6E-07 56.3 4.8 28 83-110 437-468 (613)
355 cd03281 ABC_MSH5_euk MutS5 hom 95.1 0.068 1.5E-06 47.1 6.7 13 83-95 32-44 (213)
356 PF13481 AAA_25: AAA domain; P 95.0 0.075 1.6E-06 45.4 6.7 28 124-151 128-156 (193)
357 COG5271 MDN1 AAA ATPase contai 95.0 0.026 5.6E-07 62.3 4.3 138 82-246 890-1047(4600)
358 PRK14531 adenylate kinase; Pro 95.0 0.0067 1.4E-07 52.0 -0.0 32 83-116 5-39 (183)
359 PLN03187 meiotic recombination 95.0 0.045 9.7E-07 51.8 5.5 45 132-177 217-261 (344)
360 COG3284 AcoR Transcriptional a 94.9 0.0092 2E-07 59.6 0.8 171 82-283 338-540 (606)
361 PRK13946 shikimate kinase; Pro 94.9 0.019 4.1E-07 49.3 2.7 29 82-110 12-43 (184)
362 PF00448 SRP54: SRP54-type pro 94.9 0.077 1.7E-06 46.2 6.4 13 83-95 4-16 (196)
363 COG2805 PilT Tfp pilus assembl 94.8 0.031 6.7E-07 51.5 3.9 66 81-146 126-208 (353)
364 KOG2680|consensus 94.8 0.0099 2.1E-07 54.6 0.7 53 79-132 64-122 (454)
365 cd03238 ABC_UvrA The excision 94.8 0.093 2E-06 44.8 6.6 22 126-147 95-118 (176)
366 PRK04301 radA DNA repair and r 94.8 0.07 1.5E-06 49.9 6.4 14 82-95 104-117 (317)
367 PF00437 T2SE: Type II/IV secr 94.8 0.015 3.2E-07 53.0 1.8 67 80-146 127-207 (270)
368 KOG0477|consensus 94.8 0.053 1.1E-06 54.4 5.5 40 267-306 721-760 (854)
369 cd02021 GntK Gluconate kinase 94.7 0.01 2.2E-07 48.8 0.5 25 83-107 2-29 (150)
370 TIGR02236 recomb_radA DNA repa 94.7 0.074 1.6E-06 49.5 6.3 14 82-95 97-110 (310)
371 TIGR03574 selen_PSTK L-seryl-t 94.7 0.024 5.2E-07 51.0 2.9 31 83-113 2-38 (249)
372 cd03287 ABC_MSH3_euk MutS3 hom 94.7 0.091 2E-06 46.6 6.4 14 82-95 33-46 (222)
373 PF13245 AAA_19: Part of AAA d 94.7 0.013 2.7E-07 43.0 0.8 12 84-95 14-25 (76)
374 PTZ00035 Rad51 protein; Provis 94.7 0.11 2.4E-06 49.0 7.4 43 134-177 211-253 (337)
375 PF13086 AAA_11: AAA domain; P 94.7 0.015 3.3E-07 50.7 1.5 13 83-95 20-32 (236)
376 cd01428 ADK Adenylate kinase ( 94.6 0.01 2.2E-07 50.9 0.3 33 83-117 2-37 (194)
377 PRK13948 shikimate kinase; Pro 94.6 0.018 3.8E-07 49.6 1.6 37 82-120 12-51 (182)
378 COG1936 Predicted nucleotide k 94.5 0.0095 2.1E-07 50.4 -0.2 26 83-109 3-31 (180)
379 PF04665 Pox_A32: Poxvirus A32 94.5 0.14 3.1E-06 46.0 7.2 44 200-246 127-170 (241)
380 PF00406 ADK: Adenylate kinase 94.4 0.021 4.5E-07 47.2 1.7 31 86-118 2-35 (151)
381 PRK06217 hypothetical protein; 94.4 0.012 2.6E-07 50.4 0.3 27 83-109 4-33 (183)
382 TIGR02782 TrbB_P P-type conjug 94.4 0.023 4.9E-07 52.8 2.1 65 82-146 134-214 (299)
383 smart00534 MUTSac ATPase domai 94.4 0.057 1.2E-06 46.4 4.4 13 83-95 2-14 (185)
384 cd02020 CMPK Cytidine monophos 94.4 0.011 2.3E-07 48.1 -0.2 26 84-109 3-31 (147)
385 cd02027 APSK Adenosine 5'-phos 94.3 0.048 1E-06 45.1 3.7 63 83-145 2-79 (149)
386 PRK12608 transcription termina 94.3 0.2 4.3E-06 47.9 8.2 46 4-49 20-70 (380)
387 TIGR01313 therm_gnt_kin carboh 94.3 0.016 3.4E-07 48.5 0.6 24 84-107 2-28 (163)
388 PLN02200 adenylate kinase fami 94.2 0.033 7.1E-07 49.9 2.6 33 83-117 46-81 (234)
389 cd03243 ABC_MutS_homologs The 94.2 0.074 1.6E-06 46.2 4.8 14 82-95 31-44 (202)
390 PRK14974 cell division protein 94.2 0.079 1.7E-06 50.0 5.2 67 82-148 142-234 (336)
391 cd03280 ABC_MutS2 MutS2 homolo 94.2 0.16 3.5E-06 44.0 6.8 13 83-95 31-43 (200)
392 TIGR03880 KaiC_arch_3 KaiC dom 94.1 0.21 4.6E-06 44.0 7.7 40 131-175 102-141 (224)
393 PF01443 Viral_helicase1: Vira 94.1 0.0084 1.8E-07 52.9 -1.4 12 84-95 2-13 (234)
394 PLN03186 DNA repair protein RA 94.1 0.1 2.2E-06 49.4 5.8 48 132-180 214-261 (342)
395 PF13479 AAA_24: AAA domain 94.1 0.05 1.1E-06 47.9 3.5 66 83-148 6-80 (213)
396 cd03227 ABC_Class2 ABC-type Cl 94.1 0.12 2.7E-06 43.2 5.8 14 82-95 23-36 (162)
397 PF12780 AAA_8: P-loop contain 94.1 0.35 7.7E-06 44.2 9.1 209 80-302 31-263 (268)
398 PRK14530 adenylate kinase; Pro 94.1 0.016 3.5E-07 50.9 0.3 34 83-118 6-42 (215)
399 PRK13900 type IV secretion sys 94.0 0.035 7.6E-07 52.3 2.5 65 82-146 162-245 (332)
400 PRK10263 DNA translocase FtsK; 94.0 0.099 2.1E-06 56.8 6.1 43 200-244 1174-1218(1355)
401 PRK03731 aroL shikimate kinase 94.0 0.015 3.2E-07 49.0 -0.1 27 83-109 5-34 (171)
402 PRK00279 adk adenylate kinase; 94.0 0.028 6.1E-07 49.4 1.7 32 83-116 3-37 (215)
403 PRK06581 DNA polymerase III su 94.0 0.3 6.6E-06 43.8 8.2 90 122-249 71-164 (263)
404 TIGR02239 recomb_RAD51 DNA rep 94.0 0.064 1.4E-06 50.2 4.1 44 134-178 189-232 (316)
405 PRK12723 flagellar biosynthesi 94.0 0.11 2.4E-06 50.0 5.8 125 82-239 176-328 (388)
406 PRK09302 circadian clock prote 93.9 0.26 5.6E-06 49.2 8.6 26 125-150 119-144 (509)
407 cd01129 PulE-GspE PulE/GspE Th 93.9 0.038 8.2E-07 50.4 2.4 66 81-146 81-159 (264)
408 COG4650 RtcR Sigma54-dependent 93.8 0.065 1.4E-06 49.2 3.7 65 82-150 210-296 (531)
409 TIGR01448 recD_rel helicase, p 93.8 0.1 2.2E-06 54.3 5.6 67 82-148 340-428 (720)
410 PF08433 KTI12: Chromatin asso 93.7 0.051 1.1E-06 49.7 3.0 67 83-149 4-83 (270)
411 cd03239 ABC_SMC_head The struc 93.7 0.13 2.8E-06 44.0 5.2 16 135-150 115-130 (178)
412 PRK01184 hypothetical protein; 93.6 0.021 4.5E-07 48.8 0.2 31 83-115 4-36 (184)
413 TIGR01360 aden_kin_iso1 adenyl 93.6 0.021 4.5E-07 48.6 0.2 32 83-116 6-40 (188)
414 PTZ00088 adenylate kinase 1; P 93.6 0.019 4.1E-07 51.2 -0.1 32 83-116 9-43 (229)
415 cd03115 SRP The signal recogni 93.6 0.098 2.1E-06 44.1 4.3 29 83-111 3-37 (173)
416 PRK02496 adk adenylate kinase; 93.6 0.021 4.5E-07 48.8 0.1 31 83-115 4-37 (184)
417 PF08303 tRNA_lig_kinase: tRNA 93.5 0.47 1E-05 40.0 8.1 130 87-249 6-146 (168)
418 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.5 0.22 4.9E-06 40.8 6.2 64 82-147 28-99 (144)
419 PRK14528 adenylate kinase; Pro 93.4 0.021 4.5E-07 49.2 -0.1 31 83-115 4-37 (186)
420 PRK06547 hypothetical protein; 93.4 0.021 4.5E-07 48.7 -0.1 27 83-109 18-47 (172)
421 cd01130 VirB11-like_ATPase Typ 93.4 0.049 1.1E-06 46.8 2.2 64 82-145 27-109 (186)
422 PLN02674 adenylate kinase 93.4 0.037 8.1E-07 49.8 1.5 33 83-117 34-69 (244)
423 PRK13764 ATPase; Provisional 93.4 0.03 6.6E-07 56.6 0.9 66 81-147 258-335 (602)
424 PRK14526 adenylate kinase; Pro 93.4 0.045 9.9E-07 48.2 1.9 32 83-116 3-37 (211)
425 TIGR02655 circ_KaiC circadian 93.3 0.31 6.8E-06 48.3 8.0 26 124-149 108-133 (484)
426 TIGR01351 adk adenylate kinase 93.3 0.024 5.2E-07 49.6 0.1 32 83-116 2-36 (210)
427 PF01745 IPT: Isopentenyl tran 93.3 0.035 7.6E-07 48.8 1.0 34 83-116 4-40 (233)
428 TIGR03881 KaiC_arch_4 KaiC dom 93.2 0.4 8.7E-06 42.3 7.8 29 82-110 22-56 (229)
429 cd03247 ABCC_cytochrome_bd The 93.2 0.37 7.9E-06 40.9 7.2 37 128-174 108-144 (178)
430 COG0563 Adk Adenylate kinase a 93.2 0.042 9E-07 47.1 1.3 31 84-116 4-37 (178)
431 TIGR02788 VirB11 P-type DNA tr 93.2 0.061 1.3E-06 50.1 2.5 65 82-146 146-228 (308)
432 COG0468 RecA RecA/RadA recombi 93.2 0.25 5.3E-06 45.4 6.4 43 137-180 142-184 (279)
433 PRK04328 hypothetical protein; 93.1 0.28 6.1E-06 44.2 6.7 14 82-95 25-38 (249)
434 PF06414 Zeta_toxin: Zeta toxi 93.1 0.076 1.6E-06 46.1 2.9 59 83-141 18-98 (199)
435 COG4128 Zot Zonula occludens t 93.1 0.098 2.1E-06 48.0 3.6 122 84-245 5-152 (398)
436 PRK13889 conjugal transfer rel 93.1 0.19 4.1E-06 53.9 6.4 66 83-148 365-445 (988)
437 TIGR02655 circ_KaiC circadian 93.1 0.25 5.4E-06 49.1 6.9 69 82-150 265-367 (484)
438 cd00227 CPT Chloramphenicol (C 93.1 0.024 5.1E-07 48.1 -0.3 28 83-110 5-35 (175)
439 PF13521 AAA_28: AAA domain; P 93.1 0.079 1.7E-06 44.2 2.9 31 84-115 3-36 (163)
440 PHA02530 pseT polynucleotide k 93.1 0.094 2E-06 48.3 3.6 30 83-114 5-38 (300)
441 PF08423 Rad51: Rad51; InterP 93.0 0.092 2E-06 47.7 3.4 63 134-216 131-193 (256)
442 PF07693 KAP_NTPase: KAP famil 93.0 0.44 9.6E-06 44.2 8.1 25 224-248 241-265 (325)
443 TIGR01526 nadR_NMN_Atrans nico 93.0 0.068 1.5E-06 50.3 2.5 65 82-148 164-243 (325)
444 cd03228 ABCC_MRP_Like The MRP 92.9 0.27 5.8E-06 41.4 6.0 20 82-101 30-52 (171)
445 TIGR02768 TraA_Ti Ti-type conj 92.9 0.071 1.5E-06 55.7 2.9 66 83-148 371-451 (744)
446 TIGR02524 dot_icm_DotB Dot/Icm 92.8 0.058 1.3E-06 51.4 1.9 67 80-146 134-222 (358)
447 COG1220 HslU ATP-dependent pro 92.8 0.063 1.4E-06 50.3 2.0 50 83-132 53-107 (444)
448 PRK14529 adenylate kinase; Pro 92.8 0.044 9.6E-07 48.7 0.9 34 83-118 3-39 (223)
449 PRK05057 aroK shikimate kinase 92.7 0.034 7.3E-07 47.2 0.1 28 83-110 7-37 (172)
450 cd03246 ABCC_Protease_Secretio 92.7 0.34 7.4E-06 40.9 6.3 20 82-101 30-52 (173)
451 cd03282 ABC_MSH4_euk MutS4 hom 92.7 0.34 7.4E-06 42.4 6.4 13 83-95 32-44 (204)
452 COG3265 GntK Gluconate kinase 92.6 0.053 1.1E-06 44.8 1.1 23 87-109 2-27 (161)
453 PRK13851 type IV secretion sys 92.6 0.067 1.5E-06 50.7 2.0 65 82-146 164-246 (344)
454 KOG1533|consensus 92.6 0.044 9.6E-07 48.7 0.7 28 83-110 5-38 (290)
455 TIGR00152 dephospho-CoA kinase 92.6 0.65 1.4E-05 39.7 8.0 33 84-118 3-38 (188)
456 COG4178 ABC-type uncharacteriz 92.5 0.43 9.4E-06 48.2 7.6 20 82-101 421-443 (604)
457 PRK04182 cytidylate kinase; Pr 92.4 0.04 8.7E-07 46.4 0.1 25 83-107 3-30 (180)
458 cd00267 ABC_ATPase ABC (ATP-bi 92.4 0.22 4.8E-06 41.2 4.6 66 83-148 28-110 (157)
459 cd00561 CobA_CobO_BtuR ATP:cor 92.3 0.22 4.8E-06 41.8 4.6 26 125-150 80-109 (159)
460 PRK08154 anaerobic benzoate ca 92.3 0.084 1.8E-06 49.2 2.1 28 82-109 135-165 (309)
461 PRK13894 conjugal transfer ATP 92.2 0.096 2.1E-06 49.1 2.5 65 82-146 150-229 (319)
462 PRK14021 bifunctional shikimat 92.2 0.096 2.1E-06 52.7 2.7 29 82-110 8-39 (542)
463 cd03222 ABC_RNaseL_inhibitor T 92.2 0.18 3.9E-06 43.1 3.9 64 83-147 28-100 (177)
464 PF00488 MutS_V: MutS domain V 92.2 0.27 5.8E-06 44.0 5.2 62 83-146 46-132 (235)
465 PRK13833 conjugal transfer pro 92.2 0.087 1.9E-06 49.4 2.1 64 82-145 146-224 (323)
466 PRK14527 adenylate kinase; Pro 92.1 0.03 6.6E-07 48.2 -1.0 32 83-116 9-43 (191)
467 COG2909 MalT ATP-dependent tra 91.9 0.92 2E-05 47.3 9.2 148 83-268 40-227 (894)
468 cd03286 ABC_MSH6_euk MutS6 hom 91.9 0.51 1.1E-05 41.8 6.5 14 82-95 32-45 (218)
469 PF07088 GvpD: GvpD gas vesicl 91.9 0.64 1.4E-05 44.6 7.4 14 82-95 12-25 (484)
470 COG2804 PulE Type II secretory 91.8 0.067 1.5E-06 52.5 1.0 67 81-147 259-338 (500)
471 PRK10436 hypothetical protein; 91.8 0.12 2.5E-06 51.0 2.7 66 81-146 219-297 (462)
472 PRK13975 thymidylate kinase; P 91.7 0.083 1.8E-06 45.4 1.3 23 83-105 5-30 (196)
473 PLN02459 probable adenylate ki 91.7 0.095 2.1E-06 47.6 1.7 32 83-116 32-66 (261)
474 TIGR01128 holA DNA polymerase 91.6 4.2 9.1E-05 37.1 12.7 73 226-302 104-177 (302)
475 PRK08099 bifunctional DNA-bind 91.6 0.19 4E-06 48.7 3.7 33 82-114 221-256 (399)
476 PF01580 FtsK_SpoIIIE: FtsK/Sp 91.5 0.15 3.3E-06 44.2 2.8 30 82-111 40-79 (205)
477 TIGR02538 type_IV_pilB type IV 91.5 0.12 2.5E-06 52.4 2.3 67 81-147 317-396 (564)
478 TIGR02173 cyt_kin_arch cytidyl 91.5 0.058 1.3E-06 45.0 0.1 26 83-108 3-31 (171)
479 KOG1802|consensus 91.5 0.08 1.7E-06 53.4 1.1 31 83-113 428-465 (935)
480 TIGR02533 type_II_gspE general 91.5 0.11 2.3E-06 51.6 2.0 67 81-147 243-322 (486)
481 cd03284 ABC_MutS1 MutS1 homolo 91.5 0.56 1.2E-05 41.3 6.4 13 83-95 33-45 (216)
482 PF02702 KdpD: Osmosensitive K 91.4 0.32 6.9E-06 42.4 4.6 23 212-236 145-167 (211)
483 PRK11545 gntK gluconate kinase 91.4 0.1 2.2E-06 43.9 1.5 21 87-107 2-25 (163)
484 PRK13826 Dtr system oriT relax 91.3 0.31 6.7E-06 52.8 5.3 66 83-148 400-480 (1102)
485 TIGR02653 Lon_rel_chp conserve 91.3 0.88 1.9E-05 46.4 8.2 49 260-308 396-445 (675)
486 PF06309 Torsin: Torsin; Inte 91.1 0.061 1.3E-06 43.3 -0.1 18 84-101 57-77 (127)
487 PF13191 AAA_16: AAA ATPase do 91.1 0.042 9.2E-07 46.3 -1.1 32 82-113 26-63 (185)
488 PRK08485 DNA polymerase III su 91.0 1.1 2.4E-05 39.0 7.5 87 122-245 39-138 (206)
489 cd03223 ABCD_peroxisomal_ALDP 91.0 0.86 1.9E-05 38.2 6.8 20 82-101 29-51 (166)
490 COG0467 RAD55 RecA-superfamily 91.0 0.17 3.7E-06 45.8 2.7 29 82-111 25-60 (260)
491 PRK09302 circadian clock prote 91.0 0.43 9.4E-06 47.6 5.8 69 82-150 275-377 (509)
492 PRK11889 flhF flagellar biosyn 90.8 0.44 9.5E-06 46.0 5.4 66 82-147 243-331 (436)
493 PRK00889 adenylylsulfate kinas 90.8 0.29 6.3E-06 41.3 3.8 31 83-113 7-43 (175)
494 PRK00409 recombination and DNA 90.8 0.49 1.1E-05 49.8 6.1 14 82-95 329-342 (782)
495 PRK05703 flhF flagellar biosyn 90.7 0.83 1.8E-05 44.6 7.3 14 82-95 223-236 (424)
496 PF01202 SKI: Shikimate kinase 90.7 0.083 1.8E-06 44.1 0.4 29 89-119 1-32 (158)
497 PRK08233 hypothetical protein; 90.7 0.096 2.1E-06 44.2 0.8 27 83-109 6-36 (182)
498 KOG1803|consensus 90.7 0.1 2.2E-06 52.1 1.0 31 82-112 203-239 (649)
499 TIGR03499 FlhF flagellar biosy 90.7 0.17 3.8E-06 46.5 2.5 14 82-95 196-209 (282)
500 COG2074 2-phosphoglycerate kin 90.7 6.6 0.00014 35.6 12.2 91 206-305 193-283 (299)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-81 Score=567.21 Aligned_cols=297 Identities=58% Similarity=0.901 Sum_probs=288.2
Q ss_pred CeEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEee
Q psy7780 1 MSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLR 78 (317)
Q Consensus 1 ~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~ 78 (317)
.+||+|.|++++++++|+++++++|++.+.++++++.|+||++|++|.+++.++++||++.|+++..|+.+ |+++|+|
T Consensus 73 l~vg~v~e~id~~~~iVks~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~d 152 (406)
T COG1222 73 LIVGTVLEVLDDGRAIVKSSTGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYED 152 (406)
T ss_pred ceEEEEEEEcCCceEEEEeCCCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999887 9999999
Q ss_pred chh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHH
Q psy7780 79 VVG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKL 124 (317)
Q Consensus 79 i~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~ 124 (317)
||| ++|+|||||||||+ |+|++++++|+++.+|+|+++|+|++++.
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRl 232 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARL 232 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHH
Confidence 999 78999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEE
Q psy7780 125 VRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKV 204 (317)
Q Consensus 125 l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 204 (317)
+|++|+.|++++||||||||||+++.+|.++++++++++|++|++||++||||+.. ++|.|
T Consensus 233 VRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~-------------------~nvKV 293 (406)
T COG1222 233 VRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR-------------------GNVKV 293 (406)
T ss_pred HHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC-------------------CCeEE
Confidence 99999999999999999999999999999999999999999999999999999998 99999
Q ss_pred EEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q psy7780 205 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMAL 284 (317)
Q Consensus 205 I~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~ 284 (317)
|+||||++.|||||+||||||++|+||+|+.++|.+||++|.+++.+..++||+.+|..|+|+|||||+++|.+|+|+|+
T Consensus 294 I~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~Ai 373 (406)
T COG1222 294 IMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAI 373 (406)
T ss_pred EEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcCHHHHHHHHHHHHhhhccCCCCCCC
Q psy7780 285 RERRMKVTNEDFKKSKESVLYRKKEGTPEGLY 316 (317)
Q Consensus 285 ~~~~~~it~~d~~~al~~v~~~~~~~~~~~~~ 316 (317)
|+++..||++||.+|+++++...+...+...|
T Consensus 374 R~~R~~Vt~~DF~~Av~KV~~~~~~~~~~~~~ 405 (406)
T COG1222 374 RERRDEVTMEDFLKAVEKVVKKKKKLSSTARY 405 (406)
T ss_pred HhccCeecHHHHHHHHHHHHhccccccccccc
Confidence 99999999999999999999887765544444
No 2
>KOG0726|consensus
Probab=100.00 E-value=1.3e-69 Score=479.64 Aligned_cols=298 Identities=87% Similarity=1.240 Sum_probs=291.4
Q ss_pred CeEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEee
Q psy7780 1 MSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLR 78 (317)
Q Consensus 1 ~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~ 78 (317)
++||+++|++||++++|.++.+++|++.+.+++++++|.|||.|.+|.+..+++++|-++.|+++..|+.+ |..+|.|
T Consensus 107 msvg~leEiidd~haivst~~g~e~Yv~IlSfVdKdlLepgcsvll~~k~~avvGvL~d~~dpmv~vmK~eKaP~Ety~d 186 (440)
T KOG0726|consen 107 MSVGTLEEIIDDNHAIVSTSVGSEYYVSILSFVDKDLLEPGCSVLLNHKVHAVVGVLQDDTDPMVSVMKVEKAPQETYAD 186 (440)
T ss_pred cccccHHHHhcCCceEEecccCchheeeeeeeccHhhcCCCCeeeeccccceEEEEeccCCCccceeeecccCchhhhcc
Confidence 57999999999999999999999999999999999999999999999999999999999999999998877 9999999
Q ss_pred chh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHH
Q psy7780 79 VVG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKL 124 (317)
Q Consensus 79 i~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~ 124 (317)
||| ++++||+||||||+ |+|+...++|+++.+|+|+++|.|++++.
T Consensus 187 iGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpkl 266 (440)
T KOG0726|consen 187 IGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKL 266 (440)
T ss_pred cccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHH
Confidence 999 57899999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEE
Q psy7780 125 VRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKV 204 (317)
Q Consensus 125 l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 204 (317)
+|++|+.|..++|+|+||||||+++.+|.++.+++++++++++.+||+++|||+++ ++|.|
T Consensus 267 vRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsr-------------------gDvKv 327 (440)
T KOG0726|consen 267 VRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR-------------------GDVKV 327 (440)
T ss_pred HHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcccc-------------------CCeEE
Confidence 99999999999999999999999999999999999999999999999999999998 99999
Q ss_pred EEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q psy7780 205 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMAL 284 (317)
Q Consensus 205 I~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~ 284 (317)
|++||+.+.|||||+||||+|++|+||.|+...++.||.+|..++.+..+++++++...-+.+|||||+++|.+|++.|+
T Consensus 328 imATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAl 407 (440)
T KOG0726|consen 328 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLAL 407 (440)
T ss_pred EEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcCHHHHHHHHHHHHhhhccCCCCCCCC
Q psy7780 285 RERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL 317 (317)
Q Consensus 285 ~~~~~~it~~d~~~al~~v~~~~~~~~~~~~~~ 317 (317)
|+++..++++||.+|.++|+.+++.+.++.+|+
T Consensus 408 RerRm~vt~~DF~ka~e~V~~~K~~g~~egly~ 440 (440)
T KOG0726|consen 408 RERRMKVTMEDFKKAKEKVLYKKKEGVPEGLYL 440 (440)
T ss_pred HHHHhhccHHHHHHHHHHHHHhcccCCcccccC
Confidence 999999999999999999999999999999985
No 3
>KOG0727|consensus
Probab=100.00 E-value=8.2e-66 Score=448.08 Aligned_cols=287 Identities=50% Similarity=0.875 Sum_probs=279.0
Q ss_pred eEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEeec
Q psy7780 2 SVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLRV 79 (317)
Q Consensus 2 ~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~i 79 (317)
.+|++.|.+|.++.||.+.+|++|++++.+.+++++++|++.|++|+.+..+++++|++.|..++.+..+ |+++|.||
T Consensus 78 vigqfle~vdqnt~ivgsttgsny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~di 157 (408)
T KOG0727|consen 78 VIGQFLEAVDQNTAIVGSTTGSNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADI 157 (408)
T ss_pred HHHHHHHhhhccCceeecccCCceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCcccccc
Confidence 4689999999999999999999999999999999999999999999999999999999999999988766 99999999
Q ss_pred hh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHH
Q psy7780 80 VG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLV 125 (317)
Q Consensus 80 ~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l 125 (317)
|| ++|+|||||||||+ |+|++..+.|+++.+|+++.+|.|++++++
T Consensus 158 ggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmv 237 (408)
T KOG0727|consen 158 GGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMV 237 (408)
T ss_pred ccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHH
Confidence 99 78999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEE
Q psy7780 126 RELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVI 205 (317)
Q Consensus 126 ~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI 205 (317)
|++|..|++++|+||||||+|+++.+|++.+.+.++++++++.++|++||||+.. .+|.||
T Consensus 238 rdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~-------------------~nvkvi 298 (408)
T KOG0727|consen 238 RDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT-------------------TNVKVI 298 (408)
T ss_pred HHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc-------------------cceEEE
Confidence 9999999999999999999999999999999999999999999999999999987 889999
Q ss_pred EEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q psy7780 206 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 206 ~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~ 285 (317)
++|||.+.|||||+||||+|++|+||+|++.+++-+|.....++.+.+++|++++..+.+..||+||.++|++|+|.|+|
T Consensus 299 matnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr 378 (408)
T KOG0727|consen 299 MATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVR 378 (408)
T ss_pred EecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcCHHHHHHHHHHHHhhh
Q psy7780 286 ERRMKVTNEDFKKSKESVLYRK 307 (317)
Q Consensus 286 ~~~~~it~~d~~~al~~v~~~~ 307 (317)
+++..|...||+++.+.++++.
T Consensus 379 ~nryvvl~kd~e~ay~~~vk~~ 400 (408)
T KOG0727|consen 379 ENRYVVLQKDFEKAYKTVVKKD 400 (408)
T ss_pred hcceeeeHHHHHHHHHhhcCCc
Confidence 9999999999999999988654
No 4
>KOG0728|consensus
Probab=100.00 E-value=2.2e-63 Score=432.38 Aligned_cols=289 Identities=45% Similarity=0.764 Sum_probs=279.9
Q ss_pred eEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEeec
Q psy7780 2 SVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLRV 79 (317)
Q Consensus 2 ~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~i 79 (317)
.||+|.+.+++++++|+.+....|++.+...++-..+.|+.+|++..+++.+..+||..+|++++.|..+ |+.+|+.|
T Consensus 70 yvgev~k~m~k~kVLVKvhpegKyvvdv~k~i~i~~~~~~~rVaLR~dsY~lhkiLpnKvDpLVsLMmVeKvPDStYeMi 149 (404)
T KOG0728|consen 70 YVGEVVKAMGKKKVLVKVHPEGKYVVDVDKNIDISDVTPSSRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMI 149 (404)
T ss_pred hHHHHHHhcCcceEEEEEcCCCcEEEeccCCCcHhhcCCcceEEEeccchHHHHhcccccchhhHHHhhhhCCccHHHHh
Confidence 4799999999999999999999999999999999999999999999999999999999999999988766 99999999
Q ss_pred hh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHH
Q psy7780 80 VG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLV 125 (317)
Q Consensus 80 ~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l 125 (317)
|| ++|+|||||||||+ |+|++..+.|+++++++|+++|+|++.+.+
T Consensus 150 GgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmv 229 (404)
T KOG0728|consen 150 GGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMV 229 (404)
T ss_pred ccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHH
Confidence 99 56889999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEE
Q psy7780 126 RELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVI 205 (317)
Q Consensus 126 ~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI 205 (317)
|++|-.|++++|+|||+||||++++.|..++.++++++++++.++|+++|||+.. .++.||
T Consensus 230 relfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat-------------------knikvi 290 (404)
T KOG0728|consen 230 RELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT-------------------KNIKVI 290 (404)
T ss_pred HHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc-------------------cceEEE
Confidence 9999999999999999999999999999888899999999999999999999988 899999
Q ss_pred EEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q psy7780 206 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 206 ~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~ 285 (317)
++|||.+.|||||+||||+|++|+||+|++++|.+|+++|.+++++...+++..+|+...|.||++++.+|.+|+|+|+|
T Consensus 291 matnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alr 370 (404)
T KOG0728|consen 291 MATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALR 370 (404)
T ss_pred EeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcCHHHHHHHHHHHHhhhcc
Q psy7780 286 ERRMKVTNEDFKKSKESVLYRKKE 309 (317)
Q Consensus 286 ~~~~~it~~d~~~al~~v~~~~~~ 309 (317)
+++-.+|++||+-|+.+++++..+
T Consensus 371 errvhvtqedfemav~kvm~k~~e 394 (404)
T KOG0728|consen 371 ERRVHVTQEDFEMAVAKVMQKDSE 394 (404)
T ss_pred HhhccccHHHHHHHHHHHHhcccc
Confidence 999999999999999999977654
No 5
>KOG0652|consensus
Probab=100.00 E-value=2.9e-62 Score=427.63 Aligned_cols=279 Identities=47% Similarity=0.774 Sum_probs=271.4
Q ss_pred CcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEeechh---------
Q psy7780 13 NHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLRVVG--------- 81 (317)
Q Consensus 13 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~i~g--------- 81 (317)
.++++++++.+.|++.+.+.++++.|+||+.|.+|..++-+++.||.+.|..++.|+.+ |+.+|+||||
T Consensus 105 kcaViktStRqt~fLPvvGLvd~~~LkPgDLVgvnKDsyliletLP~eyDsrVkaMevDekPtE~YsDiGGldkQIqELv 184 (424)
T KOG0652|consen 105 KCAVIKTSTRQTYFLPVVGLVDPDKLKPGDLVGVNKDSYLILETLPSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELV 184 (424)
T ss_pred eeEEEecccceeeeeeeecccChhhCCCcceeeecCCceeehhcCChhhhhhcceeeeccCCcccccccccHHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999887 8999999999
Q ss_pred ----------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhC
Q psy7780 82 ----------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA 136 (317)
Q Consensus 82 ----------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~ 136 (317)
++|+|||||||||+ |+|...+++|..+.+++|+++|+|++.+.+|+.|..|++.+
T Consensus 185 EAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEka 264 (424)
T KOG0652|consen 185 EAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKA 264 (424)
T ss_pred HHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhhccC
Confidence 68999999999999 99999999999999999999999999999999999999999
Q ss_pred CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCc
Q psy7780 137 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDP 216 (317)
Q Consensus 137 P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~ 216 (317)
|+||||||+|+++.+|+++...+++++++++.++|+++|||.+. ..|.||++|||.+.|||
T Consensus 265 P~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~-------------------~~vKviAATNRvDiLDP 325 (424)
T KOG0652|consen 265 PTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD-------------------DRVKVIAATNRVDILDP 325 (424)
T ss_pred CeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc-------------------cceEEEeecccccccCH
Confidence 99999999999999999999999999999999999999999988 89999999999999999
Q ss_pred cccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHH
Q psy7780 217 ALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDF 296 (317)
Q Consensus 217 al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~ 296 (317)
||+|+||+|++|+||.|+++.|..|+++|.+++...++++++++|+.|++|+|++++++|-+|+|.|+|++...|+.+||
T Consensus 326 ALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~atev~heDf 405 (424)
T KOG0652|consen 326 ALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGATEVTHEDF 405 (424)
T ss_pred HHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhcccccccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccC
Q psy7780 297 KKSKESVLYRKKEG 310 (317)
Q Consensus 297 ~~al~~v~~~~~~~ 310 (317)
.+++-.++.++|.+
T Consensus 406 megI~eVqakKka~ 419 (424)
T KOG0652|consen 406 MEGILEVQAKKKAS 419 (424)
T ss_pred HHHHHHHHHhhhhc
Confidence 99999999888875
No 6
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=5.3e-57 Score=433.13 Aligned_cols=298 Identities=78% Similarity=1.171 Sum_probs=284.5
Q ss_pred CeEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEee
Q psy7780 1 MSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLR 78 (317)
Q Consensus 1 ~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~ 78 (317)
+.||+|+|.+++++++|+++++++|++.+.++++++.|+||+.|.++.++..+++++|++.|+++..|..+ |..+|+|
T Consensus 105 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~D 184 (438)
T PTZ00361 105 LSVGTLEEIIDENHAIVSSSVGPEYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLESYAD 184 (438)
T ss_pred cEEEEEEEEeCCCeEEEEeCCCCEEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCCCHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999988766 8899999
Q ss_pred chh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHH
Q psy7780 79 VVG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKL 124 (317)
Q Consensus 79 i~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~ 124 (317)
|+| .+||+||||||||+ ++|++++.+|+.+.++++.++|.|++++.
T Consensus 185 IgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~ 264 (438)
T PTZ00361 185 IGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKL 264 (438)
T ss_pred hcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHH
Confidence 999 36789999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEE
Q psy7780 125 VRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKV 204 (317)
Q Consensus 125 l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 204 (317)
++.+|..|+.++||||||||||+++.+|....++++.++++++.++|.++|++... .++.|
T Consensus 265 vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~-------------------~~V~V 325 (438)
T PTZ00361 265 VRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR-------------------GDVKV 325 (438)
T ss_pred HHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc-------------------CCeEE
Confidence 99999999999999999999999999987767777888999999999999998766 78999
Q ss_pred EEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q psy7780 205 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMAL 284 (317)
Q Consensus 205 I~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~ 284 (317)
|+|||+++.||++++||||||++|+||.|+.++|.+||+.++.++.+..++++.+++..++||||+||+++|++|++.|+
T Consensus 326 I~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Al 405 (438)
T PTZ00361 326 IMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLAL 405 (438)
T ss_pred EEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred HhcCCCcCHHHHHHHHHHHHhhhccCCCCCCCC
Q psy7780 285 RERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL 317 (317)
Q Consensus 285 ~~~~~~it~~d~~~al~~v~~~~~~~~~~~~~~ 317 (317)
++++..|+.+||.+|+++++.+++...|+.+|+
T Consensus 406 r~~r~~Vt~~D~~~A~~~v~~~~~~~~~~~~~~ 438 (438)
T PTZ00361 406 RERRMKVTQADFRKAKEKVLYRKKGNIPEGLYL 438 (438)
T ss_pred HhcCCccCHHHHHHHHHHHHhhcccCCCccccC
Confidence 999999999999999999999999999999995
No 7
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.7e-55 Score=419.98 Aligned_cols=288 Identities=49% Similarity=0.848 Sum_probs=273.2
Q ss_pred CeEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEee
Q psy7780 1 MSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLR 78 (317)
Q Consensus 1 ~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~ 78 (317)
..||+++|++++++++|+++++++|++.+.+.++++.++||+.|.+|..+..+++++|.+.++.+..|... |+++|+|
T Consensus 67 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~d 146 (398)
T PTZ00454 67 LVIGQFLEMIDSNYGIVSSTSGSNYYVRILSTLNRELLKPNASVALHRHSHAVVDILPPEADSSIQLLQMSEKPDVTYSD 146 (398)
T ss_pred ceEEEEEEEEcCCEEEEEcCCCCEEEEecccccCHhhCCCCCEEEeeccchhHHHhccccccchhhhhcccCCCCCCHHH
Confidence 36999999999999999999999999999999999999999999999999999999999999998877654 9999999
Q ss_pred chh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHH
Q psy7780 79 VVG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKL 124 (317)
Q Consensus 79 i~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~ 124 (317)
|+| ++|||||||||||+ ++|++++.+|+.+.++++..+|.|++++.
T Consensus 147 igGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~ 226 (398)
T PTZ00454 147 IGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRM 226 (398)
T ss_pred cCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHH
Confidence 999 57899999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEE
Q psy7780 125 VRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKV 204 (317)
Q Consensus 125 l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 204 (317)
++++|..|+.++||||||||+|+++.+|.+...+.+.+.++++.++++++|++... .+++|
T Consensus 227 lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~-------------------~~v~V 287 (398)
T PTZ00454 227 VRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT-------------------TNVKV 287 (398)
T ss_pred HHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC-------------------CCEEE
Confidence 99999999999999999999999999887666666678899999999999998776 78999
Q ss_pred EEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q psy7780 205 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMAL 284 (317)
Q Consensus 205 I~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~ 284 (317)
|+|||+++.||||++||||||++|+||.|+.++|.+||+.++.++++..++++.+++..|+||||+||+++|++|++.|+
T Consensus 288 I~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~ 367 (398)
T PTZ00454 288 IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAV 367 (398)
T ss_pred EEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcCHHHHHHHHHHHHhhh
Q psy7780 285 RERRMKVTNEDFKKSKESVLYRK 307 (317)
Q Consensus 285 ~~~~~~it~~d~~~al~~v~~~~ 307 (317)
++++..|+.+||.+|+++++.+.
T Consensus 368 r~~~~~i~~~df~~A~~~v~~~~ 390 (398)
T PTZ00454 368 RKNRYVILPKDFEKGYKTVVRKT 390 (398)
T ss_pred HcCCCccCHHHHHHHHHHHHhcc
Confidence 99999999999999999998764
No 8
>KOG0729|consensus
Probab=100.00 E-value=3.1e-56 Score=390.72 Aligned_cols=296 Identities=42% Similarity=0.683 Sum_probs=269.6
Q ss_pred eEEEeeeeecCC----cEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCce
Q psy7780 2 SVGTLEEIIDDN----HAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSAT 75 (317)
Q Consensus 2 ~~~~~~~~l~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~ 75 (317)
+|+..-++++.+ +.++..-.-..|++.+...+.|..+..|.+|.+++..+.+---||..+|+.+..|+.+ |++|
T Consensus 96 qvarctkii~~~~~d~~yvin~kqiakfvv~lg~~vsptdieegmrvgvdrnkyqi~lplppkidpsvtmm~veekpdvt 175 (435)
T KOG0729|consen 96 QVARCTKIISGNSEDPKYVINVKQIAKFVVGLGDRVSPTDIEEGMRVGVDRNKYQIQLPLPPKIDPSVTMMQVEEKPDVT 175 (435)
T ss_pred eeheeeeecCCCCCCcceeeeHHHHHHHHhccccccCchhhhhhheecccccceeEeccCCCCCCCceeEEEeecCCCcc
Confidence 344444544432 2333333444566666677889999999999999999999889999999999998776 9999
Q ss_pred Eeechh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCc
Q psy7780 76 FLRVVG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDG 121 (317)
Q Consensus 76 ~~~i~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~ 121 (317)
|.|+|| ++|+|||||||||+ |+|+..++.|+++-+|+|+++|+|++
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgeg 255 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEG 255 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhh
Confidence 999999 67999999999999 99999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCC
Q psy7780 122 PKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGD 201 (317)
Q Consensus 122 ~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (317)
.+++|++|+.|+...-|||||||||++++.|++++.++++++++++.++++++|||+.+ ++
T Consensus 256 armvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr-------------------gn 316 (435)
T KOG0729|consen 256 ARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR-------------------GN 316 (435)
T ss_pred HHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC-------------------CC
Confidence 99999999999999999999999999999999999999999999999999999999998 99
Q ss_pred eEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy7780 202 VKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGL 281 (317)
Q Consensus 202 v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~ 281 (317)
+.|+++||||+.|||||+||||+|++++|.+|+.+.|..||++|.+.+....++-++-+|+.+..-+|++|+.+|.+|+|
T Consensus 317 ikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagm 396 (435)
T KOG0729|consen 317 IKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGM 396 (435)
T ss_pred eEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCcCHHHHHHHHHHHHhhhccCCCCCCC
Q psy7780 282 MALRERRMKVTNEDFKKSKESVLYRKKEGTPEGLY 316 (317)
Q Consensus 282 ~a~~~~~~~it~~d~~~al~~v~~~~~~~~~~~~~ 316 (317)
+|++.+++..|..||.+|+.++++.+.+.+...-|
T Consensus 397 fairarrk~atekdfl~av~kvvkgy~kfsatpry 431 (435)
T KOG0729|consen 397 FAIRARRKVATEKDFLDAVNKVVKGYAKFSATPRY 431 (435)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHhccCCcch
Confidence 99999999999999999999999999875444444
No 9
>KOG0651|consensus
Probab=100.00 E-value=7.8e-54 Score=382.11 Aligned_cols=288 Identities=40% Similarity=0.677 Sum_probs=274.3
Q ss_pred eEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEeec
Q psy7780 2 SVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLRV 79 (317)
Q Consensus 2 ~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~i 79 (317)
.+|+|.+.+++.+.+|+.++|+.|++.|...+|...+.+|.+|.++-.+..++..||.++| ++..|..+ +..+|+.+
T Consensus 56 ~~gevlk~l~~~~~iVK~s~Gpryvvg~~~~~D~~~i~~G~rv~ldittltIm~~lprevd-~vy~m~~e~~~~~s~~~~ 134 (388)
T KOG0651|consen 56 IIGEVLKQLEDEKFIVKASSGPRYVVGCRRSVDKEKIARGTRVVLDITTLTIMRGLPREVD-LVYNMSHEDPRNISFENV 134 (388)
T ss_pred hhHHHHhhccccceEeecCCCCcEEEEcccccchhhhccCceeeeeeeeeehhcccchHHH-HHHHhhhcCccccCHHHh
Confidence 4788999999999999999999999999999999999999999999999999999999999 77777666 67899999
Q ss_pred hh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHH
Q psy7780 80 VG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLV 125 (317)
Q Consensus 80 ~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l 125 (317)
+| ..++|||||||||+ ++|..++++|+.++++++.++|.||+.+.|
T Consensus 135 ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlI 214 (388)
T KOG0651|consen 135 GGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLI 214 (388)
T ss_pred CChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHH
Confidence 99 46799999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEE
Q psy7780 126 RELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVI 205 (317)
Q Consensus 126 ~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI 205 (317)
|+.|..|+++.|||||+||||++++.+++..+..+.+++++|++++++||+++.. ++|.+|
T Consensus 215 Remf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l-------------------~rVk~I 275 (388)
T KOG0651|consen 215 RDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTL-------------------HRVKTI 275 (388)
T ss_pred HHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhc-------------------ccccEE
Confidence 9999999999999999999999999998888889999999999999999999988 899999
Q ss_pred EEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q psy7780 206 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 206 ~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~ 285 (317)
+|||+|+.|||||+||||+|+.++.|.|+...|..|++.|.+.+.....++.+++.+..+||+|+|+++.|++|.++|++
T Consensus 276 matNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~ 355 (388)
T KOG0651|consen 276 MATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIP 355 (388)
T ss_pred EecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccc
Confidence 99999999999999999999999999999999999999999988888889999999999999999999999999999999
Q ss_pred hcCCCcCHHHHHHHHHHHHhhhcc
Q psy7780 286 ERRMKVTNEDFKKSKESVLYRKKE 309 (317)
Q Consensus 286 ~~~~~it~~d~~~al~~v~~~~~~ 309 (317)
+.+..+-++||..++.++...++-
T Consensus 356 ~~~~~vl~Ed~~k~vrk~~~~kkl 379 (388)
T KOG0651|consen 356 EERDEVLHEDFMKLVRKQADAKKL 379 (388)
T ss_pred hhhHHHhHHHHHHHHHHHHHHHHh
Confidence 999999999999999988765544
No 10
>KOG0730|consensus
Probab=100.00 E-value=1.1e-52 Score=405.93 Aligned_cols=212 Identities=41% Similarity=0.658 Sum_probs=201.3
Q ss_pred CCceEeechh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhh
Q psy7780 72 TSATFLRVVG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKY 117 (317)
Q Consensus 72 ~~~~~~~i~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~ 117 (317)
++++|+|||| ++|||||||||||+ |+|++++++|+.|++.+|+++|
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~ 508 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKY 508 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHh
Confidence 8899999999 78999999999999 9999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccccc
Q psy7780 118 LGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIY 197 (317)
Q Consensus 118 ~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 197 (317)
+|++|+.|+++|++|++.+||||||||||+++..|+++.. ....|+++++|++|||+...
T Consensus 509 vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~---~v~~RVlsqLLtEmDG~e~~----------------- 568 (693)
T KOG0730|consen 509 VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSS---GVTDRVLSQLLTEMDGLEAL----------------- 568 (693)
T ss_pred cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCcc---chHHHHHHHHHHHccccccc-----------------
Confidence 9999999999999999999999999999999999964333 45678999999999999887
Q ss_pred CCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHH
Q psy7780 198 LPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 277 (317)
Q Consensus 198 ~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~ 277 (317)
.+|+||++||||+.||+||+||||||+.|++|+|+.+.|.+||+.+++++++.+++|+++||+.|+|||||||.++|+
T Consensus 569 --k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq 646 (693)
T KOG0730|consen 569 --KNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQ 646 (693)
T ss_pred --CcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc--CCCcCHHHHHHHHHHHHh
Q psy7780 278 EAGLMALRER--RMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 278 ~A~~~a~~~~--~~~it~~d~~~al~~v~~ 305 (317)
+|++.|++++ ...|+.+||++|++.+..
T Consensus 647 ~A~~~a~~e~i~a~~i~~~hf~~al~~~r~ 676 (693)
T KOG0730|consen 647 EAALLALRESIEATEITWQHFEEALKAVRP 676 (693)
T ss_pred HHHHHHHHHhcccccccHHHHHHHHHhhcc
Confidence 9999999986 568999999999987653
No 11
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=3.9e-51 Score=390.92 Aligned_cols=296 Identities=50% Similarity=0.835 Sum_probs=274.6
Q ss_pred eEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEeec
Q psy7780 2 SVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLRV 79 (317)
Q Consensus 2 ~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~i 79 (317)
.+|++.+.+++++++|+++++..|++.+.++++...+++|+.|.++..+..+..++|...++.+..+... |+.+|+||
T Consensus 54 ~~~~i~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di 133 (389)
T PRK03992 54 IVATVLEVLDDGRVVVKSSGGPQFLVNVSPFIDREKLKPGARVALNQQSLAIVEVLPSEKDPRVQAMEVIESPNVTYEDI 133 (389)
T ss_pred eEEEEEEEeCCCeEEEEECCCCEEEEeccccCCHhHCCCCCEEEEcCcchhhhhcccccccchhheeeecCCCCCCHHHh
Confidence 6899999999999999999999999999999999999999999999999999999999998887666554 89999999
Q ss_pred hh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHH
Q psy7780 80 VG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLV 125 (317)
Q Consensus 80 ~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l 125 (317)
+| ++||+||||||||+ ++|++++.+|+.++++++..+|.|++++.+
T Consensus 134 ~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i 213 (389)
T PRK03992 134 GGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLV 213 (389)
T ss_pred CCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHH
Confidence 99 36789999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEE
Q psy7780 126 RELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVI 205 (317)
Q Consensus 126 ~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI 205 (317)
+.+|+.|+.++||||||||+|.++.+|.+...+++.++++++.+++.+++++... +++.||
T Consensus 214 ~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~-------------------~~v~VI 274 (389)
T PRK03992 214 RELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR-------------------GNVKII 274 (389)
T ss_pred HHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC-------------------CCEEEE
Confidence 9999999999999999999999999887666666778899999999999998766 789999
Q ss_pred EEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q psy7780 206 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 206 ~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~ 285 (317)
+|||+++.||++++|||||++.|+||+|+.++|.+||+.++++..+..++++..++..|+||+|+||+++|++|++.|++
T Consensus 275 ~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~ 354 (389)
T PRK03992 275 AATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIR 354 (389)
T ss_pred EecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888889999999999999999999999999999999
Q ss_pred hcCCCcCHHHHHHHHHHHHhhhccC---CCCCCC
Q psy7780 286 ERRMKVTNEDFKKSKESVLYRKKEG---TPEGLY 316 (317)
Q Consensus 286 ~~~~~it~~d~~~al~~v~~~~~~~---~~~~~~ 316 (317)
+++..|+.+||.+|++++...+++. .+..||
T Consensus 355 ~~~~~i~~~d~~~A~~~~~~~~~~~~~~~~~~~~ 388 (389)
T PRK03992 355 DDRTEVTMEDFLKAIEKVMGKEEKDSMEEPGVMF 388 (389)
T ss_pred cCCCCcCHHHHHHHHHHHhccccccccccccccc
Confidence 9999999999999999998766653 334454
No 12
>KOG0733|consensus
Probab=100.00 E-value=1.6e-51 Score=393.40 Aligned_cols=212 Identities=36% Similarity=0.594 Sum_probs=197.8
Q ss_pred CCceEeechh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhh
Q psy7780 72 TSATFLRVVG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKY 117 (317)
Q Consensus 72 ~~~~~~~i~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~ 117 (317)
|+++|+|||| ++|++||||||||+ |+|+|.|++|+.|.+.+|+++|
T Consensus 506 PdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkY 585 (802)
T KOG0733|consen 506 PDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKY 585 (802)
T ss_pred CCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHH
Confidence 9999999999 78999999999999 9999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccccc
Q psy7780 118 LGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIY 197 (317)
Q Consensus 118 ~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 197 (317)
+||+++.+|.+|++|+.++||||||||+|+|+++|++.. .....+++++||.+|||+..+
T Consensus 586 VGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~---s~~s~RvvNqLLtElDGl~~R----------------- 645 (802)
T KOG0733|consen 586 VGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG---SSVSSRVVNQLLTELDGLEER----------------- 645 (802)
T ss_pred hhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC---chhHHHHHHHHHHHhcccccc-----------------
Confidence 999999999999999999999999999999999996544 444578999999999999888
Q ss_pred CCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhc--CCCCCcCCCHHHHHHhCC--CCCHHHHH
Q psy7780 198 LPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTS--RMTLAEDVNLQELIMAKD--DLSGADIK 273 (317)
Q Consensus 198 ~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~--~~~~~~~~~~~~ia~~t~--g~s~~dl~ 273 (317)
.+|+||+||||||.+|||++||||||+.++++.|+.++|.+||+.+++ +.++++++|+++||+.+. |||||||.
T Consensus 646 --~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLa 723 (802)
T KOG0733|consen 646 --RGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLA 723 (802)
T ss_pred --cceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHH
Confidence 889999999999999999999999999999999999999999999999 778899999999999866 99999999
Q ss_pred HHHHHHHHHHHHhc----------------CCCcCHHHHHHHHHHHHh
Q psy7780 274 AICTEAGLMALRER----------------RMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 274 ~l~~~A~~~a~~~~----------------~~~it~~d~~~al~~v~~ 305 (317)
.||++|.+.|+++. ...++..||++|+.++..
T Consensus 724 aLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~p 771 (802)
T KOG0733|consen 724 ALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRP 771 (802)
T ss_pred HHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCC
Confidence 99999999999873 124788899999998763
No 13
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=3.4e-48 Score=368.40 Aligned_cols=283 Identities=51% Similarity=0.845 Sum_probs=266.1
Q ss_pred eEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEeec
Q psy7780 2 SVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLRV 79 (317)
Q Consensus 2 ~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~i 79 (317)
.+|++++.+++++.+++++++.+|++.+.+|++++.+++|+.|.++..+..++.++|...++.+..+... |..+|+|+
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di 124 (364)
T TIGR01242 45 IVGTVLEVLDDNRVVVKSSTGPNFVVNVSAFIDRKSLKPGARVALNQQTLTIVDVLPTSKDPLVKGMEVEERPNVSYEDI 124 (364)
T ss_pred EEEEEEEEecCCEEEEEeCCCCEEEEeccccCCHhHCCCCCEEEEcCCcceEEeecccccccccccceeccCCCCCHHHh
Confidence 6899999999999999999999999999999999999999999999999999999999999887776654 88999999
Q ss_pred hh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHH
Q psy7780 80 VG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLV 125 (317)
Q Consensus 80 ~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l 125 (317)
+| ++||+||||||||+ ++|++++.+|+.+.++++..+|.|++...+
T Consensus 125 ~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i 204 (364)
T TIGR01242 125 GGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLV 204 (364)
T ss_pred CChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHH
Confidence 99 25789999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEE
Q psy7780 126 RELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVI 205 (317)
Q Consensus 126 ~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI 205 (317)
+.+|+.|+...|+||||||+|.++..+.+...+++.+.++++.+++.+++++... +++.||
T Consensus 205 ~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~-------------------~~v~vI 265 (364)
T TIGR01242 205 REIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR-------------------GNVKVI 265 (364)
T ss_pred HHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC-------------------CCEEEE
Confidence 9999999999999999999999998887666666778889999999999998765 789999
Q ss_pred EEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q psy7780 206 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 206 ~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~ 285 (317)
+|||+++.+|++++|||||++.|+|+.|+.++|.+||+.++.+..+..++++.+++..|+||+|+||+++|++|++.|++
T Consensus 266 ~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~ 345 (364)
T TIGR01242 266 AATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIR 345 (364)
T ss_pred EecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988888889999999999999999999999999999999
Q ss_pred hcCCCcCHHHHHHHHHHH
Q psy7780 286 ERRMKVTNEDFKKSKESV 303 (317)
Q Consensus 286 ~~~~~it~~d~~~al~~v 303 (317)
+++..|+.+||.+|++++
T Consensus 346 ~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 346 EERDYVTMDDFIKAVEKV 363 (364)
T ss_pred hCCCccCHHHHHHHHHHh
Confidence 999999999999999986
No 14
>KOG0734|consensus
Probab=100.00 E-value=1.3e-48 Score=368.67 Aligned_cols=212 Identities=37% Similarity=0.571 Sum_probs=198.6
Q ss_pred ceEeechh----hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccc
Q psy7780 74 ATFLRVVG----SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 74 ~~~~~i~g----~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
..|..+|| ++||.||||||||+ |+|.|.+.|||+.++|++-.+|+|.+.+.+|++|+.|++++||||||||||
T Consensus 327 ~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiD 406 (752)
T KOG0734|consen 327 TKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEID 406 (752)
T ss_pred HHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechh
Confidence 34444554 88999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCccee
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDR 226 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~ 226 (317)
+++.+|.. .......++++|+|.+||||..+ ..|+||++||.|+.||+||.||||||+
T Consensus 407 avG~kR~~---~~~~y~kqTlNQLLvEmDGF~qN-------------------eGiIvigATNfpe~LD~AL~RPGRFD~ 464 (752)
T KOG0734|consen 407 AVGGKRNP---SDQHYAKQTLNQLLVEMDGFKQN-------------------EGIIVIGATNFPEALDKALTRPGRFDR 464 (752)
T ss_pred hhcccCCc---cHHHHHHHHHHHHHHHhcCcCcC-------------------CceEEEeccCChhhhhHHhcCCCccce
Confidence 99999943 22337789999999999999987 899999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhh
Q psy7780 227 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYR 306 (317)
Q Consensus 227 ~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~ 306 (317)
+|.+|.||...|.+||+.|+++++++.++|+.-||+-|.||+||||+|+++.|+..|..++...|+++|++.|-.+++..
T Consensus 465 ~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akDrIlMG 544 (752)
T KOG0734|consen 465 HVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAKDRILMG 544 (752)
T ss_pred eEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCcccccHHHHhhhhhheeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred h
Q psy7780 307 K 307 (317)
Q Consensus 307 ~ 307 (317)
-
T Consensus 545 ~ 545 (752)
T KOG0734|consen 545 P 545 (752)
T ss_pred c
Confidence 3
No 15
>KOG0736|consensus
Probab=100.00 E-value=3e-48 Score=378.83 Aligned_cols=216 Identities=37% Similarity=0.581 Sum_probs=199.0
Q ss_pred CCceEeechh------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhc
Q psy7780 72 TSATFLRVVG------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYL 118 (317)
Q Consensus 72 ~~~~~~~i~g------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~ 118 (317)
|+++|+|||| ++|||||||||||+ |+|.|+...|++|.+.+|+++|+
T Consensus 667 PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYV 746 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYV 746 (953)
T ss_pred CccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHh
Confidence 8899999999 78999999999999 99999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccC
Q psy7780 119 GDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYL 198 (317)
Q Consensus 119 g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~ 198 (317)
|++|+++|++|++||..+||||||||+|+++++|+.+++++ .-+.|+++|+|.+|||+.....
T Consensus 747 GqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSG-GVMDRVVSQLLAELDgls~~~s---------------- 809 (953)
T KOG0736|consen 747 GQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSG-GVMDRVVSQLLAELDGLSDSSS---------------- 809 (953)
T ss_pred cchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCcc-ccHHHHHHHHHHHhhcccCCCC----------------
Confidence 99999999999999999999999999999999998766654 3577999999999999985311
Q ss_pred CCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCC-CHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCC-CCCHHHHHHHH
Q psy7780 199 PGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLP-DEKTKRRIFNIHTSRMTLAEDVNLQELIMAKD-DLSGADIKAIC 276 (317)
Q Consensus 199 ~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P-~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~-g~s~~dl~~l~ 276 (317)
.+|+||+||||||.|||||+||||||+.++++++ +.+.+..+|+...+++.++.++|+.++|+.+. .|||||+.++|
T Consensus 810 -~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLC 888 (953)
T KOG0736|consen 810 -QDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLC 888 (953)
T ss_pred -CceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHH
Confidence 7899999999999999999999999999999998 67889999999999999999999999999974 79999999999
Q ss_pred HHHHHHHHHhc-----------------CCCcCHHHHHHHHHHHHh
Q psy7780 277 TEAGLMALRER-----------------RMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 277 ~~A~~~a~~~~-----------------~~~it~~d~~~al~~v~~ 305 (317)
..|.+.|+++. .-.|+++||.+|+++...
T Consensus 889 SdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~P 934 (953)
T KOG0736|consen 889 SDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQP 934 (953)
T ss_pred HHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCC
Confidence 99999999873 125999999999998653
No 16
>KOG0738|consensus
Probab=100.00 E-value=7.4e-47 Score=345.93 Aligned_cols=216 Identities=38% Similarity=0.576 Sum_probs=195.3
Q ss_pred cCCCceEeechh------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 70 NQTSATFLRVVG------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 70 ~~~~~~~~~i~g------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
..|.+.|+||.| ++|+.||||||||+ |+|.|++.+||.|+.+.+.+|
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSK 284 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSK 284 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhh
Confidence 348999999999 56788999999999 999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHH-HHHHHHHHHHhcCCCcccccccchhhhccccc
Q psy7780 117 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREI-QRTMLELLNQLDGFDSRVQNRRLSEVYSSLTL 195 (317)
Q Consensus 117 ~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~-~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 195 (317)
|.|++|+.+|-+|+.|+.++|++|||||||+|+.+|+++ ++++. .++-++||.+|||+....++.
T Consensus 285 wRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s---~EHEaSRRvKsELLvQmDG~~~t~e~~----------- 350 (491)
T KOG0738|consen 285 WRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS---SEHEASRRVKSELLVQMDGVQGTLENS----------- 350 (491)
T ss_pred hccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc---cchhHHHHHHHHHHHHhhccccccccc-----------
Confidence 999999999999999999999999999999999999543 33333 455579999999998764321
Q ss_pred ccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHH
Q psy7780 196 IYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275 (317)
Q Consensus 196 ~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l 275 (317)
.-|+|+++||-||.||+|++| ||+++|++|+|+.++|..+++..++....+++++++.+++.++||||+||.++
T Consensus 351 ----k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nv 424 (491)
T KOG0738|consen 351 ----KVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNV 424 (491)
T ss_pred ----eeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHH
Confidence 348999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-----------------CCCcCHHHHHHHHHHHHh
Q psy7780 276 CTEAGLMALRER-----------------RMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 276 ~~~A~~~a~~~~-----------------~~~it~~d~~~al~~v~~ 305 (317)
|++|.|.+.|+. ...++++||++|+.++..
T Consensus 425 CreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~p 471 (491)
T KOG0738|consen 425 CREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRP 471 (491)
T ss_pred HHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCc
Confidence 999999999852 246999999999998754
No 17
>KOG0731|consensus
Probab=100.00 E-value=1.2e-44 Score=359.44 Aligned_cols=216 Identities=41% Similarity=0.687 Sum_probs=204.4
Q ss_pred CCceEeechh------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhc
Q psy7780 72 TSATFLRVVG------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYL 118 (317)
Q Consensus 72 ~~~~~~~i~g------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~ 118 (317)
+.++|.||.| +.||.||||||||+ |+|.|+|.||+.+++|+++.+++
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~ 385 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFV 385 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhc
Confidence 6689999998 78999999999999 99999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhhCCceEeecccccccccccC-CCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccccc
Q psy7780 119 GDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYD-SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIY 197 (317)
Q Consensus 119 g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~-~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 197 (317)
|..+..++++|..|+.++||||||||||+++..|++ ...+++.+..++|+|+|.+|||+.+.
T Consensus 386 g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~----------------- 448 (774)
T KOG0731|consen 386 GVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS----------------- 448 (774)
T ss_pred ccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC-----------------
Confidence 999999999999999999999999999999999953 23356677889999999999999887
Q ss_pred CCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHH
Q psy7780 198 LPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAIC 276 (317)
Q Consensus 198 ~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~ 276 (317)
.+|+|+++|||++.||+||+||||||+.|+++.|+..+|.+|++.|+++.++. +++++..+|.+|.||+|+||.++|
T Consensus 449 --~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~ 526 (774)
T KOG0731|consen 449 --KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLC 526 (774)
T ss_pred --CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhh
Confidence 88999999999999999999999999999999999999999999999999885 888999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHHhh
Q psy7780 277 TEAGLMALRERRMKVTNEDFKKSKESVLYR 306 (317)
Q Consensus 277 ~~A~~~a~~~~~~~it~~d~~~al~~v~~~ 306 (317)
++|+..|.|++...|+..||+.|+++++..
T Consensus 527 neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 527 NEAALLAARKGLREIGTKDLEYAIERVIAG 556 (774)
T ss_pred hHHHHHHHHhccCccchhhHHHHHHHHhcc
Confidence 999999999999999999999999988865
No 18
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-44 Score=352.93 Aligned_cols=209 Identities=39% Similarity=0.657 Sum_probs=200.8
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++|+.||||||||+ |+|.|++.||+++++|+++.+|+|-+...+|++|..|++++||||||||||+++.+|+....+
T Consensus 185 GvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~Gg 264 (596)
T COG0465 185 GVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGG 264 (596)
T ss_pred ceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCC
Confidence 78999999999999 999999999999999999999999999999999999999999999999999999999766667
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
+..+..++++|+|.+|||+..+ ..|++|++||||+.+||||+||||||+.|.++.|+...|
T Consensus 265 gnderEQTLNQlLvEmDGF~~~-------------------~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gR 325 (596)
T COG0465 265 GNDEREQTLNQLLVEMDGFGGN-------------------EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGR 325 (596)
T ss_pred CchHHHHHHHHHHhhhccCCCC-------------------CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhH
Confidence 7788899999999999999976 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhcc
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKE 309 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~~ 309 (317)
.+|++.|.++.++..++++..+|+.|.||+|+|+.+++++|+..|.++++..|++.||.+|..+++.....
T Consensus 326 e~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~er 396 (596)
T COG0465 326 EQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPER 396 (596)
T ss_pred HHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999976544
No 19
>KOG0733|consensus
Probab=100.00 E-value=1e-44 Score=346.93 Aligned_cols=186 Identities=36% Similarity=0.593 Sum_probs=172.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++|||||||||||+ |+|+|++++|+.|+++++++.+.|++++.||++|+.|+..+|||+||||||+++++|..
T Consensus 225 GvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~---- 300 (802)
T KOG0733|consen 225 GVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREE---- 300 (802)
T ss_pred ceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhh----
Confidence 78999999999999 99999999999999999999999999999999999999999999999999999999943
Q ss_pred chhHH-HHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHH
Q psy7780 159 GEREI-QRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 237 (317)
Q Consensus 159 ~~~~~-~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~ 237 (317)
++.++ .+++.+||+.||++...... ..+|+||+||||||.|||||+|+||||+.|.+..|++.+
T Consensus 301 aqreMErRiVaQLlt~mD~l~~~~~~---------------g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~a 365 (802)
T KOG0733|consen 301 AQREMERRIVAQLLTSMDELSNEKTK---------------GDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETA 365 (802)
T ss_pred HHHHHHHHHHHHHHHhhhcccccccC---------------CCCeEEEecCCCCcccCHHHhccccccceeeecCCchHH
Confidence 33343 45668999999998755221 167999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q psy7780 238 KRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRE 286 (317)
Q Consensus 238 r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~ 286 (317)
|.+||+..++++.++.++|+..||+.|.||.||||.+||.+|++.|+++
T Consensus 366 R~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR 414 (802)
T KOG0733|consen 366 REEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKR 414 (802)
T ss_pred HHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999976
No 20
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=5e-44 Score=312.65 Aligned_cols=222 Identities=34% Similarity=0.523 Sum_probs=201.7
Q ss_pred CCceEeechh---------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCc
Q psy7780 72 TSATFLRVVG---------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDG 121 (317)
Q Consensus 72 ~~~~~~~i~g---------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~ 121 (317)
++.+|+||.| -+|||||||||||+ |+|++++.+|+.+++++|++.++|++
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdg 195 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDG 195 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhH
Confidence 7889999999 56999999999999 99999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCC
Q psy7780 122 PKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGD 201 (317)
Q Consensus 122 ~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (317)
.++|+++|+.|++.+|||+||||+|+++-.|.-.. -...+..+++.||++|||+..+ ..
T Consensus 196 ar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQe--lRGDVsEiVNALLTelDgi~en-------------------eG 254 (368)
T COG1223 196 ARRIHELYERARKAAPCIVFIDELDAIALDRRYQE--LRGDVSEIVNALLTELDGIKEN-------------------EG 254 (368)
T ss_pred HHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHH--hcccHHHHHHHHHHhccCcccC-------------------Cc
Confidence 99999999999999999999999999987663221 1234678899999999999876 88
Q ss_pred eEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHH-HHHHHHH
Q psy7780 202 VKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIK-AICTEAG 280 (317)
Q Consensus 202 v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~-~l~~~A~ 280 (317)
|+.|++||+|+.||+|+++ ||...|+|.+|+.++|.+|++.+.+++++.-+.++..++..|.|+||+||+ .++..|.
T Consensus 255 VvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aL 332 (368)
T COG1223 255 VVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTAL 332 (368)
T ss_pred eEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999999999889999999999999999998 6778888
Q ss_pred HHHHHhcCCCcCHHHHHHHHHHHHhhhccCCCCCCCC
Q psy7780 281 LMALRERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL 317 (317)
Q Consensus 281 ~~a~~~~~~~it~~d~~~al~~v~~~~~~~~~~~~~~ 317 (317)
..|+.+++..|+.+|+++|+++ ..++....|+.||+
T Consensus 333 h~Ai~ed~e~v~~edie~al~k-~r~~r~~~p~h~~~ 368 (368)
T COG1223 333 HRAIAEDREKVEREDIEKALKK-ERKRRAPRPKHLYV 368 (368)
T ss_pred HHHHHhchhhhhHHHHHHHHHh-hccccCCCcccccC
Confidence 9999999999999999999998 33444455788875
No 21
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=4.1e-42 Score=334.44 Aligned_cols=282 Identities=30% Similarity=0.453 Sum_probs=234.0
Q ss_pred eEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhh--hccCCCceEeec
Q psy7780 2 SVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTA--VANQTSATFLRV 79 (317)
Q Consensus 2 ~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~i 79 (317)
.|++|.|++++++++|+++++.++++.+...+..+.+++|+.+.+++++...+..+|... +.. ++..|+++|+||
T Consensus 108 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~p~v~~~dI 184 (512)
T TIGR03689 108 EIATLKEVLGDGRALVVDHSGEERVVKLAGALADELIRAGDSLLVDPKAGYAFEAVPKAE---VEDLVLEEVPDVTYADI 184 (512)
T ss_pred ceEEEEEEeCCCeEEEEeCCCCeEEeehhhhhCHhhCCCCCEEEEcccchhhhhcCCHhH---HhcceeecCCCCCHHHc
Confidence 367899999999999999999999999999999999999999999999988888887542 222 233489999999
Q ss_pred hh-------------------------------hHHHhhhcCCCchh---hhhhcCCc----------eEEEEechhhhh
Q psy7780 80 VG-------------------------------SELIQKYLGDGPKL---AVANQTSA----------TFLRVVGSELIQ 115 (317)
Q Consensus 80 ~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~----------~~~~v~~s~l~~ 115 (317)
+| ++|||||||||||+ ++|++++. .|+.++++++++
T Consensus 185 gGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~ 264 (512)
T TIGR03689 185 GGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLN 264 (512)
T ss_pred CChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcc
Confidence 98 57899999999999 89998754 477888899999
Q ss_pred hhcCCchHHHHHHHHHHHhh----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhc
Q psy7780 116 KYLGDGPKLVRELFRVAEEH----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYS 191 (317)
Q Consensus 116 ~~~g~~~~~l~~~f~~a~~~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~ 191 (317)
+|.|++++.++.+|+.|+.. .||||||||+|+++.+|+...++ ..-.+++.+||++||++...
T Consensus 265 kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~--d~e~~il~~LL~~LDgl~~~----------- 331 (512)
T TIGR03689 265 KYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSS--DVETTVVPQLLSELDGVESL----------- 331 (512)
T ss_pred cccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccc--hHHHHHHHHHHHHhcccccC-----------
Confidence 99999999999999999875 69999999999999888432221 12245678999999999876
Q ss_pred ccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcC-CCCC---------cCCCHHHHH
Q psy7780 192 SLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSR-MTLA---------EDVNLQELI 261 (317)
Q Consensus 192 ~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~-~~~~---------~~~~~~~ia 261 (317)
++++||+|||+++.||||++||||||++|+|++|+.++|++||+.++.. .++. ...++..++
T Consensus 332 --------~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~ 403 (512)
T TIGR03689 332 --------DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALI 403 (512)
T ss_pred --------CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHH
Confidence 7899999999999999999999999999999999999999999999864 3331 111222222
Q ss_pred H-----------------------------hCCCCCHHHHHHHHHHHHHHHHHh----cCCCcCHHHHHHHHHHHHhhh
Q psy7780 262 M-----------------------------AKDDLSGADIKAICTEAGLMALRE----RRMKVTNEDFKKSKESVLYRK 307 (317)
Q Consensus 262 ~-----------------------------~t~g~s~~dl~~l~~~A~~~a~~~----~~~~it~~d~~~al~~v~~~~ 307 (317)
+ .++.+||++|+++|.+|...|+++ +...++.+|+..|+..-....
T Consensus 404 ~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e~~~~ 482 (512)
T TIGR03689 404 QRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDEFRES 482 (512)
T ss_pred HHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHhhccc
Confidence 2 245689999999999999998876 356899999999998765444
No 22
>KOG0735|consensus
Probab=100.00 E-value=1.5e-41 Score=329.55 Aligned_cols=183 Identities=36% Similarity=0.611 Sum_probs=174.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++|+|||||||||. |+|..++..|+.|.+++|+++|+|.+|..+|++|++|+..+|||+||||+|+++++|+.+.++
T Consensus 703 giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTG 782 (952)
T KOG0735|consen 703 GILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTG 782 (952)
T ss_pred ceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCC
Confidence 78999999999999 999999999999999999999999999999999999999999999999999999999765554
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
- ..|+++++|++|||.++. .+|.|+++|.|||.|||||+||||+|+.++-|.|++.+|
T Consensus 783 V---TDRVVNQlLTelDG~Egl-------------------~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eR 840 (952)
T KOG0735|consen 783 V---TDRVVNQLLTELDGAEGL-------------------DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPER 840 (952)
T ss_pred c---hHHHHHHHHHhhcccccc-------------------ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHH
Confidence 3 468999999999999987 889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRE 286 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~ 286 (317)
.+|++...+....+.++|++.+|..|+|||||||..++..|.+.|+.+
T Consensus 841 l~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 841 LEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred HHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 999999999888999999999999999999999999999999888765
No 23
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-41 Score=331.39 Aligned_cols=200 Identities=47% Similarity=0.691 Sum_probs=186.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
..|||||||||||+ |+|++++.+|+.+++++++++|+|+++++++.+|..|++.+||||||||+|++++.|+...++
T Consensus 278 giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~ 357 (494)
T COG0464 278 GVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDG 357 (494)
T ss_pred eeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCch
Confidence 46899999999999 999999999999999999999999999999999999999999999999999999999544333
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
.. .+++.++|.++|++... .+|+||+|||+||.||+|++||||||+.|++|+|+.++|
T Consensus 358 ~~---~r~~~~lL~~~d~~e~~-------------------~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r 415 (494)
T COG0464 358 SG---RRVVGQLLTELDGIEKA-------------------EGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEER 415 (494)
T ss_pred HH---HHHHHHHHHHhcCCCcc-------------------CceEEEecCCCccccCHhhcccCccceEeecCCCCHHHH
Confidence 22 68999999999999987 889999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC--CCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc-CCCcCHHHHHHHHHHH
Q psy7780 239 RRIFNIHTSRMT--LAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRER-RMKVTNEDFKKSKESV 303 (317)
Q Consensus 239 ~~Il~~~l~~~~--~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~-~~~it~~d~~~al~~v 303 (317)
.+||+.+++... +..++++..+++.|+||+|+||..+|++|++.+.++. ...++++||.+|++++
T Consensus 416 ~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~~ 483 (494)
T COG0464 416 LEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARRREVTLDDFLDALKKI 483 (494)
T ss_pred HHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHhc
Confidence 999999998544 3578999999999999999999999999999999998 7889999999999984
No 24
>KOG0739|consensus
Probab=100.00 E-value=7.6e-42 Score=303.88 Aligned_cols=192 Identities=33% Similarity=0.549 Sum_probs=175.8
Q ss_pred CCceEeechh------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhc
Q psy7780 72 TSATFLRVVG------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYL 118 (317)
Q Consensus 72 ~~~~~~~i~g------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~ 118 (317)
|++.|+||.| ++||||||||||+. |+|.|.+.+||+|+.|+|+++|.
T Consensus 128 PNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWm 207 (439)
T KOG0739|consen 128 PNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 207 (439)
T ss_pred CCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHh
Confidence 9999999999 67899999999999 99999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccC
Q psy7780 119 GDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYL 198 (317)
Q Consensus 119 g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~ 198 (317)
|++++.++.+|+.|+++.|+||||||||++|+.|+.+.+ ....++-.+||.+|.|+....
T Consensus 208 GESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEs---easRRIKTEfLVQMqGVG~d~----------------- 267 (439)
T KOG0739|consen 208 GESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENES---EASRRIKTEFLVQMQGVGNDN----------------- 267 (439)
T ss_pred ccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCch---HHHHHHHHHHHHhhhccccCC-----------------
Confidence 999999999999999999999999999999999854332 223455679999999987652
Q ss_pred CCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHH
Q psy7780 199 PGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICT 277 (317)
Q Consensus 199 ~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~ 277 (317)
..|+|+++||-||.||.|++| ||+++|++|+|+..+|..+|+.|+...+.. .+.|+.+++++|+||||+||.-+++
T Consensus 268 -~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVr 344 (439)
T KOG0739|consen 268 -DGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVR 344 (439)
T ss_pred -CceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEeh
Confidence 689999999999999999999 999999999999999999999999887765 6778999999999999999999999
Q ss_pred HHHHHHHHh
Q psy7780 278 EAGLMALRE 286 (317)
Q Consensus 278 ~A~~~a~~~ 286 (317)
.|.|..+|+
T Consensus 345 DalmePvRk 353 (439)
T KOG0739|consen 345 DALMEPVRK 353 (439)
T ss_pred hhhhhhHHH
Confidence 999988876
No 25
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=2.3e-40 Score=326.21 Aligned_cols=206 Identities=39% Similarity=0.655 Sum_probs=191.8
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+.||+||||||||+ ++|++++.+|+.++++++.+.+.|.+++.++.+|+.|+.++||||||||+|.++.+++....+
T Consensus 90 giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~ 169 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGG 169 (495)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCC
Confidence 46899999999999 999999999999999999999999999999999999999999999999999999888654344
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
...+..++++++|.+||++.+. ++++||+|||+++.|||+++||||||+.|+++.|+.++|
T Consensus 170 ~~~~~~~~~~~lL~~~d~~~~~-------------------~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R 230 (495)
T TIGR01241 170 GNDEREQTLNQLLVEMDGFGTN-------------------TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGR 230 (495)
T ss_pred ccHHHHHHHHHHHhhhccccCC-------------------CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHH
Confidence 4556778999999999999776 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhh
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYR 306 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~ 306 (317)
.+||+.++++.+...+.++..++..|.||||+||.++|++|+..|.+++...|+.+||.+|++++...
T Consensus 231 ~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~ 298 (495)
T TIGR01241 231 EEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIAG 298 (495)
T ss_pred HHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcc
Confidence 99999999988877888999999999999999999999999999999998999999999999998754
No 26
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=6.7e-40 Score=336.48 Aligned_cols=202 Identities=44% Similarity=0.695 Sum_probs=185.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGG 159 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~ 159 (317)
+|||||||||||+ ++|++++++|+.++++++.++|+|++++.++.+|..|+..+||||||||+|++++.|+....
T Consensus 490 iLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~-- 567 (733)
T TIGR01243 490 VLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFD-- 567 (733)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCC--
Confidence 5899999999999 99999999999999999999999999999999999999999999999999999998854322
Q ss_pred hhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHH
Q psy7780 160 EREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKR 239 (317)
Q Consensus 160 ~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~ 239 (317)
.....++++++|.+||++... .+++||+|||+|+.||+|++||||||+.|++|+|+.++|.
T Consensus 568 ~~~~~~~~~~lL~~ldg~~~~-------------------~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~ 628 (733)
T TIGR01243 568 TSVTDRIVNQLLTEMDGIQEL-------------------SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARK 628 (733)
T ss_pred ccHHHHHHHHHHHHhhcccCC-------------------CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHH
Confidence 224567889999999998766 7899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc------------------CCCcCHHHHHHHHH
Q psy7780 240 RIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRER------------------RMKVTNEDFKKSKE 301 (317)
Q Consensus 240 ~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~------------------~~~it~~d~~~al~ 301 (317)
+||+.++++.++..++++..+|+.|+||||+||.++|++|++.|+++. ...|+.+||.+|++
T Consensus 629 ~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~ 708 (733)
T TIGR01243 629 EIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALK 708 (733)
T ss_pred HHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998852 13699999999998
Q ss_pred HHHh
Q psy7780 302 SVLY 305 (317)
Q Consensus 302 ~v~~ 305 (317)
++..
T Consensus 709 ~~~p 712 (733)
T TIGR01243 709 KVKP 712 (733)
T ss_pred HcCC
Confidence 7654
No 27
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=1.8e-39 Score=316.12 Aligned_cols=201 Identities=25% Similarity=0.403 Sum_probs=179.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++||+||||||||+ ++|++++.+|+.++++.+.++|+|++++.++++|+.|+..+||||||||||.++..+...+
T Consensus 261 GILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~-- 338 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKG-- 338 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCC--
Confidence 47899999999999 9999999999999999999999999999999999999999999999999999987653322
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
......+++.+++..|+... .+|+||+|||+++.||++++||||||+.++++.|+.++|
T Consensus 339 d~~~~~rvl~~lL~~l~~~~---------------------~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR 397 (489)
T CHL00195 339 DSGTTNRVLATFITWLSEKK---------------------SPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEER 397 (489)
T ss_pred CchHHHHHHHHHHHHHhcCC---------------------CceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHH
Confidence 22345677888888887532 679999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCC--cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhh
Q psy7780 239 RRIFNIHTSRMTLA--EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYR 306 (317)
Q Consensus 239 ~~Il~~~l~~~~~~--~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~ 306 (317)
.+||+.++++.... .+.+++.+++.|+||||+||+++|.+|+..|..+++ .++.+||..|++++...
T Consensus 398 ~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~~-~lt~~dl~~a~~~~~Pl 466 (489)
T CHL00195 398 EKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEKR-EFTTDDILLALKQFIPL 466 (489)
T ss_pred HHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHhcCCC
Confidence 99999999886433 478899999999999999999999999999987764 58999999999988753
No 28
>KOG0737|consensus
Probab=100.00 E-value=1.8e-39 Score=296.94 Aligned_cols=200 Identities=35% Similarity=0.556 Sum_probs=181.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++|+|||||||||+ |+|.+.|+.|+.|+.+.+.++|+|++++.++.+|..|.+.+||||||||+|.++..|. .
T Consensus 129 GiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~----s 204 (386)
T KOG0737|consen 129 GILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR----S 204 (386)
T ss_pred cceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc----c
Confidence 67889999999999 9999999999999999999999999999999999999999999999999999999882 3
Q ss_pred chhHHHHHH-HHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHH
Q psy7780 159 GEREIQRTM-LELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 237 (317)
Q Consensus 159 ~~~~~~~~l-~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~ 237 (317)
+++|..+.+ .+|+...||+.+... ..|+|++|||||..||.|++| |+.++++++.|+.++
T Consensus 205 ~dHEa~a~mK~eFM~~WDGl~s~~~-----------------~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~q 265 (386)
T KOG0737|consen 205 TDHEATAMMKNEFMALWDGLSSKDS-----------------ERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQ 265 (386)
T ss_pred chHHHHHHHHHHHHHHhccccCCCC-----------------ceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhh
Confidence 344555555 699999999988722 359999999999999999999 999999999999999
Q ss_pred HHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh----c------------------------CC
Q psy7780 238 KRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRE----R------------------------RM 289 (317)
Q Consensus 238 r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~----~------------------------~~ 289 (317)
|.+||+..+++.++++++|+.++|..|+||||.||+++|+.|++..+++ + ..
T Consensus 266 R~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r 345 (386)
T KOG0737|consen 266 RRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGLLDLDKAIADLKPTQAAASSCLLR 345 (386)
T ss_pred HHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccchhhhhhhhhccCCcccccccccC
Confidence 9999999999999999999999999999999999999999999877654 1 25
Q ss_pred CcCHHHHHHHHHHHH
Q psy7780 290 KVTNEDFKKSKESVL 304 (317)
Q Consensus 290 ~it~~d~~~al~~v~ 304 (317)
.++++||..+.++|-
T Consensus 346 ~l~~eDf~~a~~~v~ 360 (386)
T KOG0737|consen 346 PLEQEDFPKAINRVS 360 (386)
T ss_pred cccHHHHHHHHHhhh
Confidence 688999999998554
No 29
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=8.6e-39 Score=320.15 Aligned_cols=207 Identities=37% Similarity=0.640 Sum_probs=193.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++||+||||||||+ ++|++++.+|+.++++++...+.|.+...++.+|+.|+.++||||||||+|+++..|+....+
T Consensus 218 gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~ 297 (638)
T CHL00176 218 GVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGG 297 (638)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCC
Confidence 46899999999999 999999999999999999999999999999999999999999999999999999888655555
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
...+.++++.++|.++|++... .+|+||+|||+++.||++++||||||+.|++++|+.++|
T Consensus 298 ~~~e~~~~L~~LL~~~dg~~~~-------------------~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R 358 (638)
T CHL00176 298 GNDEREQTLNQLLTEMDGFKGN-------------------KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGR 358 (638)
T ss_pred CcHHHHHHHHHHHhhhccccCC-------------------CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHH
Confidence 5667788999999999998766 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhh
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRK 307 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~ 307 (317)
.+||+.++++.....+.++..+|+.|.||+|+||+++|++|+..|.+++...|+.+||++|+++++...
T Consensus 359 ~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g~ 427 (638)
T CHL00176 359 LDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDRVIAGL 427 (638)
T ss_pred HHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhhh
Confidence 999999999877778889999999999999999999999999999999999999999999999987543
No 30
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=9.5e-38 Score=329.02 Aligned_cols=202 Identities=17% Similarity=0.243 Sum_probs=173.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhh----------cC-----------------------------
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKY----------LG----------------------------- 119 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~----------~g----------------------------- 119 (317)
++|++||||||||+ |+|.++++||+.|+++++++++ +|
T Consensus 1632 GILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~~~~~ 1711 (2281)
T CHL00206 1632 GILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNALTMD 1711 (2281)
T ss_pred ceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcchhhhh
Confidence 78999999999999 9999999999999999999765 12
Q ss_pred --Cch--HHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccc
Q psy7780 120 --DGP--KLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTL 195 (317)
Q Consensus 120 --~~~--~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~ 195 (317)
+++ ..|+.+|+.|++++||||||||||+++.+.. . ..++.+++++||+......
T Consensus 1712 m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds-------~--~ltL~qLLneLDg~~~~~s------------- 1769 (2281)
T CHL00206 1712 MMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES-------N--YLSLGLLVNSLSRDCERCS------------- 1769 (2281)
T ss_pred hhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc-------c--eehHHHHHHHhccccccCC-------------
Confidence 222 3489999999999999999999999986521 0 1357899999998742100
Q ss_pred ccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHH--hcCCCCCc-CCCHHHHHHhCCCCCHHHH
Q psy7780 196 IYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIH--TSRMTLAE-DVNLQELIMAKDDLSGADI 272 (317)
Q Consensus 196 ~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~--l~~~~~~~-~~~~~~ia~~t~g~s~~dl 272 (317)
..+|+||||||+|+.|||||+||||||+.|+++.|+..+|.+++..+ .++..+.. .+++..+|+.|.|||||||
T Consensus 1770 ---~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADL 1846 (2281)
T CHL00206 1770 ---TRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDL 1846 (2281)
T ss_pred ---CCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHH
Confidence 16799999999999999999999999999999999999999998865 44555553 3689999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhc
Q psy7780 273 KAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKK 308 (317)
Q Consensus 273 ~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~ 308 (317)
+++|++|++.|+++++..|+.++|..|+.+++...+
T Consensus 1847 anLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~ 1882 (2281)
T CHL00206 1847 VALTNEALSISITQKKSIIDTNTIRSALHRQTWDLR 1882 (2281)
T ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999999999986543
No 31
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=4.3e-37 Score=310.45 Aligned_cols=205 Identities=37% Similarity=0.657 Sum_probs=193.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+++|+||||||||+ ++|++++.+|+.++++++...+.|.+...++.+|..|+..+||||||||+|+++.+|+....+
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g 266 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGG 266 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCC
Confidence 58899999999999 999999999999999999999999999999999999999999999999999999988654455
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
+..+..++++++|.+||++.+. ..++||+|||+|+.||+|++||||||+.|+++.|+.++|
T Consensus 267 ~~~~~~~~ln~lL~~mdg~~~~-------------------~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R 327 (644)
T PRK10733 267 GHDEREQTLNQMLVEMDGFEGN-------------------EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGR 327 (644)
T ss_pred CchHHHHHHHHHHHhhhcccCC-------------------CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHH
Confidence 5566778999999999999876 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~ 305 (317)
.+||+.|+++.++..++++..+++.|.||||+||.++|++|+..|.++++..|+.+||++|+.++..
T Consensus 328 ~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 328 EQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred HHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhc
Confidence 9999999999998889999999999999999999999999999999999999999999999998864
No 32
>KOG0741|consensus
Probab=100.00 E-value=1e-36 Score=287.92 Aligned_cols=206 Identities=34% Similarity=0.528 Sum_probs=179.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc-eEEEEechhhhhhhcCCchHHHHHHHHHHHhhC--------CceEeeccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA-TFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA--------PSIVFIDEIDAVG 149 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~-~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~--------P~Ii~iDEiD~l~ 149 (317)
++|||||||||||+ .+..-+++ +--.|++++++++|+|++|.++|++|..|.+-. --||+|||||++|
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAIC 337 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAIC 337 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHH
Confidence 67999999999999 67777764 566789999999999999999999999996422 2499999999999
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEE
Q psy7780 150 TKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIE 229 (317)
Q Consensus 150 ~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~ 229 (317)
.+|++...+ ..--..+++|||..|||++.. ++|+||+-|||.|.||+||+|||||+..++
T Consensus 338 KqRGS~~g~-TGVhD~VVNQLLsKmDGVeqL-------------------NNILVIGMTNR~DlIDEALLRPGRlEVqmE 397 (744)
T KOG0741|consen 338 KQRGSMAGS-TGVHDTVVNQLLSKMDGVEQL-------------------NNILVIGMTNRKDLIDEALLRPGRLEVQME 397 (744)
T ss_pred HhcCCCCCC-CCccHHHHHHHHHhcccHHhh-------------------hcEEEEeccCchhhHHHHhcCCCceEEEEE
Confidence 999654332 223356889999999999988 899999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHhcCC----CCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc---------------CCC
Q psy7780 230 FPLPDEKTKRRIFNIHTSRM----TLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRER---------------RMK 290 (317)
Q Consensus 230 ~~~P~~~~r~~Il~~~l~~~----~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~---------------~~~ 290 (317)
+.+|+++.|.+|+++|++++ .++.++|+.++|..|..||||+|+.+++.|...|..+. .-.
T Consensus 398 IsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e~lk 477 (744)
T KOG0741|consen 398 ISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIENLK 477 (744)
T ss_pred EeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhhhee
Confidence 99999999999999998876 35689999999999999999999999999998887652 236
Q ss_pred cCHHHHHHHHHHHHhhh
Q psy7780 291 VTNEDFKKSKESVLYRK 307 (317)
Q Consensus 291 it~~d~~~al~~v~~~~ 307 (317)
|+++||..|++.+....
T Consensus 478 V~r~DFl~aL~dVkPAF 494 (744)
T KOG0741|consen 478 VTRGDFLNALEDVKPAF 494 (744)
T ss_pred ecHHHHHHHHHhcCccc
Confidence 99999999999887544
No 33
>KOG0740|consensus
Probab=100.00 E-value=1.1e-35 Score=280.40 Aligned_cols=215 Identities=34% Similarity=0.496 Sum_probs=188.5
Q ss_pred CCCceEeechh------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhh
Q psy7780 71 QTSATFLRVVG------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKY 117 (317)
Q Consensus 71 ~~~~~~~~i~g------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~ 117 (317)
.+++.|+|++| ..|+.||||+|||+ |||.|+++.|+.+++++|.++|
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~ 226 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKY 226 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhc
Confidence 37899999999 67889999999999 9999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccccc
Q psy7780 118 LGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIY 197 (317)
Q Consensus 118 ~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 197 (317)
+|++++.+|.+|..|+..+|+||||||+|.++.+|.+.... ...+...++|.++++..+...
T Consensus 227 ~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e---~srr~ktefLiq~~~~~s~~~--------------- 288 (428)
T KOG0740|consen 227 VGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHE---SSRRLKTEFLLQFDGKNSAPD--------------- 288 (428)
T ss_pred cChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccc---cchhhhhHHHhhhccccCCCC---------------
Confidence 99999999999999999999999999999999999432222 224677899999999877633
Q ss_pred CCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHH
Q psy7780 198 LPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAIC 276 (317)
Q Consensus 198 ~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~ 276 (317)
++|+||+|||+||.+|.|++| ||.+++++|+|+.++|..+|+.++.+.+.. .+.++..+++.|+||++.||.++|
T Consensus 289 --drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~ 364 (428)
T KOG0740|consen 289 --DRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALC 364 (428)
T ss_pred --CeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHH
Confidence 689999999999999999999 999999999999999999999999876433 567899999999999999999999
Q ss_pred HHHHHHHHHhc-------------CCCcCHHHHHHHHHHHHhhh
Q psy7780 277 TEAGLMALRER-------------RMKVTNEDFKKSKESVLYRK 307 (317)
Q Consensus 277 ~~A~~~a~~~~-------------~~~it~~d~~~al~~v~~~~ 307 (317)
.+|++--.+.. -..++..||.++++.+...-
T Consensus 365 kea~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~ 408 (428)
T KOG0740|consen 365 KEAAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSV 408 (428)
T ss_pred HHhhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhcccc
Confidence 99987554432 34688999999999876443
No 34
>KOG0730|consensus
Probab=100.00 E-value=5.7e-35 Score=283.18 Aligned_cols=194 Identities=37% Similarity=0.576 Sum_probs=179.7
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhC-CceEeecccccccccccCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA-PSIVFIDEIDAVGTKRYDSNS 157 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~-P~Ii~iDEiD~l~~~r~~~~~ 157 (317)
..|+|||||||||+ |+|++.++.++.+++++++.++.|++++.+|++|+.|.+++ |+||||||+|+++++|.....
T Consensus 220 g~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~ 299 (693)
T KOG0730|consen 220 GLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD 299 (693)
T ss_pred CccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch
Confidence 67999999999999 99999999999999999999999999999999999999999 999999999999999854332
Q ss_pred CchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHH
Q psy7780 158 GGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 237 (317)
Q Consensus 158 ~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~ 237 (317)
...++..+++..+|+..+. ++++||++||+|+.||++++| ||||+.+++..|+..+
T Consensus 300 ----~e~Rv~sqlltL~dg~~~~-------------------~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~ 355 (693)
T KOG0730|consen 300 ----VESRVVSQLLTLLDGLKPD-------------------AKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDG 355 (693)
T ss_pred ----HHHHHHHHHHHHHhhCcCc-------------------CcEEEEEecCCccccChhhhc-CCCcceeeecCCCchh
Confidence 3467788999999998866 889999999999999999999 9999999999999999
Q ss_pred HHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Q psy7780 238 KRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 238 r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~ 304 (317)
|.+|++.+.++++..+++++.++|..|.||+|+|+.++|++|++.+.++ ++++|..|+..+.
T Consensus 356 RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~-----~~~~~~~A~~~i~ 417 (693)
T KOG0730|consen 356 RLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR-----TLEIFQEALMGIR 417 (693)
T ss_pred HHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----hHHHHHHHHhcCC
Confidence 9999999999999988899999999999999999999999999999987 6777777766554
No 35
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=5.2e-34 Score=263.56 Aligned_cols=190 Identities=18% Similarity=0.132 Sum_probs=147.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhh-----CCceEeeccccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH-----APSIVFIDEIDAVGTKRY 153 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~-----~P~Ii~iDEiD~l~~~r~ 153 (317)
..+||||||||||+ ++|+++|++|+.+++++|.++|+||+++.||++|..|++. +||||||||||+++++|+
T Consensus 150 gllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~ 229 (413)
T PLN00020 150 ILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFG 229 (413)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCC
Confidence 45789999999999 9999999999999999999999999999999999999864 699999999999999985
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCC
Q psy7780 154 DSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLP 233 (317)
Q Consensus 154 ~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P 233 (317)
+.+.. ...+.+..+||+.+|+...-.-.. .+. -.....+|+||+|||+|+.|||+|+||||||+.+ +.|
T Consensus 230 ~~~~t--v~~qiV~~tLLnl~D~p~~v~l~G----~w~---~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lP 298 (413)
T PLN00020 230 TTQYT--VNNQMVNGTLMNIADNPTNVSLGG----DWR---EKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAP 298 (413)
T ss_pred CCCcc--hHHHHHHHHHHHHhcCCccccccc----ccc---ccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCC
Confidence 32211 112333468888888642100000 000 0000167999999999999999999999999864 689
Q ss_pred CHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCC----CCHHHHHHHHHHHHHHH
Q psy7780 234 DEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD----LSGADIKAICTEAGLMA 283 (317)
Q Consensus 234 ~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g----~s~~dl~~l~~~A~~~a 283 (317)
+.++|.+||+.++++..+. ..++..++..+.| |.||--..+..++...-
T Consensus 299 d~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~ 351 (413)
T PLN00020 299 TREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKW 351 (413)
T ss_pred CHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHH
Confidence 9999999999999988765 4678888888766 56766666666665433
No 36
>KOG0732|consensus
Probab=100.00 E-value=7.1e-35 Score=296.53 Aligned_cols=217 Identities=37% Similarity=0.570 Sum_probs=189.5
Q ss_pred ccCCCceEeechh-------------------------------hHHHhhhcCCCchh---hhhhcC-----CceEEEEe
Q psy7780 69 ANQTSATFLRVVG-------------------------------SELIQKYLGDGPKL---AVANQT-----SATFLRVV 109 (317)
Q Consensus 69 ~~~~~~~~~~i~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~ 109 (317)
..+..++|++||| ++||+||||||||+ |+|.++ +..|+.-+
T Consensus 257 ~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrk 336 (1080)
T KOG0732|consen 257 SVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRK 336 (1080)
T ss_pred hhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhc
Confidence 4457889999999 68999999999998 777776 35788889
Q ss_pred chhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhh
Q psy7780 110 GSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEV 189 (317)
Q Consensus 110 ~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~ 189 (317)
+.+..++|+|+.++.++.+|+.|++++|+|||+||||-|++.|+. ..+....++...+|..|||+.+.
T Consensus 337 gaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSs---kqEqih~SIvSTLLaLmdGldsR--------- 404 (1080)
T KOG0732|consen 337 GADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSS---KQEQIHASIVSTLLALMDGLDSR--------- 404 (1080)
T ss_pred CchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccc---hHHHhhhhHHHHHHHhccCCCCC---------
Confidence 999999999999999999999999999999999999999999843 23333456778999999999998
Q ss_pred hcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCC
Q psy7780 190 YSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLS 268 (317)
Q Consensus 190 ~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s 268 (317)
++|+||+|||||+.+|||++||||||+.++||+|+.++|.+|+.++.++..-. ...-+..+|+.|.||-
T Consensus 405 ----------gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~ 474 (1080)
T KOG0732|consen 405 ----------GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYG 474 (1080)
T ss_pred ----------CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999998876422 3334678999999999
Q ss_pred HHHHHHHHHHHHHHHHHhc----------------CCCcCHHHHHHHHHHHHhhh
Q psy7780 269 GADIKAICTEAGLMALRER----------------RMKVTNEDFKKSKESVLYRK 307 (317)
Q Consensus 269 ~~dl~~l~~~A~~~a~~~~----------------~~~it~~d~~~al~~v~~~~ 307 (317)
|+||+++|.+|++.++++. ...|...||..|+.++...-
T Consensus 475 gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~ 529 (1080)
T KOG0732|consen 475 GADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSS 529 (1080)
T ss_pred hHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCCCC
Confidence 9999999999999999874 23588899999998877543
No 37
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.98 E-value=1.1e-31 Score=275.94 Aligned_cols=202 Identities=44% Similarity=0.688 Sum_probs=180.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++||+||||||||+ ++|++++.+|+.++++++.++|.|+++..++.+|+.|..+.|+||||||+|.+++++......
T Consensus 214 giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~ 293 (733)
T TIGR01243 214 GVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGE 293 (733)
T ss_pred eEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcch
Confidence 35799999999999 999999999999999999999999999999999999999999999999999999887432222
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
.-.+++.+|+..+|++... +.++||++||+++.||++++|||||++.++++.|+.++|
T Consensus 294 ---~~~~~~~~Ll~~ld~l~~~-------------------~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R 351 (733)
T TIGR01243 294 ---VEKRVVAQLLTLMDGLKGR-------------------GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRAR 351 (733)
T ss_pred ---HHHHHHHHHHHHhhccccC-------------------CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHH
Confidence 1245667888888888765 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc-------------------CCCcCHHHHHHH
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRER-------------------RMKVTNEDFKKS 299 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~-------------------~~~it~~d~~~a 299 (317)
.+||+.+.+++++..+.++..+++.|.||+++|+..+|++|++.++++. ...++.+||..|
T Consensus 352 ~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~A 431 (733)
T TIGR01243 352 KEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEA 431 (733)
T ss_pred HHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHH
Confidence 9999999999888888999999999999999999999999999887652 235789999999
Q ss_pred HHHHHh
Q psy7780 300 KESVLY 305 (317)
Q Consensus 300 l~~v~~ 305 (317)
++.+..
T Consensus 432 l~~v~p 437 (733)
T TIGR01243 432 LKMVEP 437 (733)
T ss_pred Hhhccc
Confidence 987654
No 38
>KOG0743|consensus
Probab=99.93 E-value=2.9e-26 Score=215.44 Aligned_cols=204 Identities=21% Similarity=0.246 Sum_probs=156.8
Q ss_pred EecccccccccccCCCCchhhhhccC-CCceEeechh-----hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 46 LNHKVHAVVGVLSDDTDPMVTAVANQ-TSATFLRVVG-----SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~i~g-----~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
-|++++..+.+-|+.++.+++.+... ....|..-.| ++|||||||||||+ |+|+++++.++.++.+++..
T Consensus 195 ~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~- 273 (457)
T KOG0743|consen 195 PHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL- 273 (457)
T ss_pred CCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC-
Confidence 36677788888788888888887776 3344444444 89999999999999 99999999999999888543
Q ss_pred hcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC--chh--HHHHHHHHHHHHhcCCCcccccccchhhhcc
Q psy7780 117 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG--GER--EIQRTMLELLNQLDGFDSRVQNRRLSEVYSS 192 (317)
Q Consensus 117 ~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~--~~~--~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~ 192 (317)
.. .++.+...+... +||+|++||+-+..+...... ... ...-+|+.||+.+||+.+...
T Consensus 274 ----n~-dLr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg---------- 336 (457)
T KOG0743|consen 274 ----DS-DLRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCG---------- 336 (457)
T ss_pred ----cH-HHHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCC----------
Confidence 22 388888876655 899999999987644322221 111 123478899999999998833
Q ss_pred cccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCC--CCHH
Q psy7780 193 LTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD--LSGA 270 (317)
Q Consensus 193 ~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g--~s~~ 270 (317)
+..++|+|||.++.|||||+||||+|.+|+++..+.++-+.+++.|+..-. +..-+++|.+..++ .|||
T Consensus 337 -------~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA 407 (457)
T KOG0743|consen 337 -------DERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPA 407 (457)
T ss_pred -------CceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHH
Confidence 367899999999999999999999999999999999999999999986432 22335566655444 5999
Q ss_pred HHHHHH
Q psy7780 271 DIKAIC 276 (317)
Q Consensus 271 dl~~l~ 276 (317)
|+...+
T Consensus 408 ~V~e~l 413 (457)
T KOG0743|consen 408 QVAEEL 413 (457)
T ss_pred HHHHHH
Confidence 987554
No 39
>KOG0736|consensus
Probab=99.90 E-value=2.9e-23 Score=204.27 Aligned_cols=204 Identities=24% Similarity=0.355 Sum_probs=175.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
..|++|+||||||+ ++|+++|+|++.++|.++.....+.++..+...|.+|+.++|||||+-++|.++..+. .+
T Consensus 433 ~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~d---gg 509 (953)
T KOG0736|consen 433 SVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQD---GG 509 (953)
T ss_pred EEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCC---Cc
Confidence 47999999999999 9999999999999999999999999999999999999999999999999999985542 24
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
....+.+.+..++. .|.+... ..+++||++|++.+.|++.+++ .|-+.|.+|.|++++|
T Consensus 510 ed~rl~~~i~~~ls-~e~~~~~------------------~~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qR 568 (953)
T KOG0736|consen 510 EDARLLKVIRHLLS-NEDFKFS------------------CPPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQR 568 (953)
T ss_pred hhHHHHHHHHHHHh-cccccCC------------------CCceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHH
Confidence 45556666666665 3333322 1789999999999999999999 8889999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH---hc-----------------CCCcCHHHHHH
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALR---ER-----------------RMKVTNEDFKK 298 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~---~~-----------------~~~it~~d~~~ 298 (317)
.+||++++....+..++....++.+|.||+.+|+..++..+...+.. +. ...++++||.+
T Consensus 569 l~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~k 648 (953)
T KOG0736|consen 569 LEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDK 648 (953)
T ss_pred HHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHH
Confidence 99999999999999999999999999999999999998776333322 11 25799999999
Q ss_pred HHHHHHhhhcc
Q psy7780 299 SKESVLYRKKE 309 (317)
Q Consensus 299 al~~v~~~~~~ 309 (317)
++.++.+.+..
T Consensus 649 als~~~~~fs~ 659 (953)
T KOG0736|consen 649 ALSRLQKEFSD 659 (953)
T ss_pred HHHHHHHhhhh
Confidence 99999887765
No 40
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.90 E-value=1.5e-23 Score=169.76 Aligned_cols=128 Identities=40% Similarity=0.617 Sum_probs=111.1
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhC-CceEeecccccccccccCCCCC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA-PSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~-P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+|++||||||||+ ++|+.++.+++.++++++.+.+.+++.+.++.+|..|+..+ ||||||||+|.+++.. ...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~~~ 77 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---QPS 77 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---STS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc---ccc
Confidence 3789999999999 99999999999999999999999999999999999999998 9999999999999887 222
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCC
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 232 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~ 232 (317)
.......++..++..++..... ..++++|+|||+++.++++++| +||+++|++|.
T Consensus 78 ~~~~~~~~~~~L~~~l~~~~~~------------------~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 78 SSSFEQRLLNQLLSLLDNPSSK------------------NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp SSHHHHHHHHHHHHHHHTTTTT------------------SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cccccccccceeeecccccccc------------------cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 3344456677888888877654 1569999999999999999998 89999999974
No 41
>KOG0744|consensus
Probab=99.88 E-value=7.8e-23 Score=184.43 Aligned_cols=210 Identities=21% Similarity=0.284 Sum_probs=165.5
Q ss_pred ceEeechhhHHHhhhcCCCchh---hhhhcCC---------ceEEEEechhhhhhhcCCchHHHHHHHHHHHhhC---C-
Q psy7780 74 ATFLRVVGSELIQKYLGDGPKL---AVANQTS---------ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA---P- 137 (317)
Q Consensus 74 ~~~~~i~g~~Ll~G~pGtGKT~---aiA~~~~---------~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~---P- 137 (317)
.+|..+ +|++||||||||+ |+|+.+. ..++++++.++++||++|+.+.+..+|+...+.. .
T Consensus 174 It~NRl---iLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~ 250 (423)
T KOG0744|consen 174 ITWNRL---ILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGN 250 (423)
T ss_pred eeeeeE---EEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCc
Confidence 567666 8999999999999 9999984 4789999999999999999999999999887543 2
Q ss_pred -ceEeecccccccccccCCCCC-chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCC
Q psy7780 138 -SIVFIDEIDAVGTKRYDSNSG-GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215 (317)
Q Consensus 138 -~Ii~iDEiD~l~~~r~~~~~~-~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld 215 (317)
-.++|||+++++..|....++ ..++.-|+++.+|+++|.+... .+|++++|+|-.+.||
T Consensus 251 lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~-------------------~NvliL~TSNl~~siD 311 (423)
T KOG0744|consen 251 LVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRY-------------------PNVLILATSNLTDSID 311 (423)
T ss_pred EEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccC-------------------CCEEEEeccchHHHHH
Confidence 357899999999888544333 3356679999999999999887 8999999999999999
Q ss_pred ccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC---CC--C--------cCCC-----HHHHHH-hCCCCCHHHHHHHH
Q psy7780 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM---TL--A--------EDVN-----LQELIM-AKDDLSGADIKAIC 276 (317)
Q Consensus 216 ~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~---~~--~--------~~~~-----~~~ia~-~t~g~s~~dl~~l~ 276 (317)
.|+.. |-|-+.++++|+.++|.+|++.++..+ ++ . ..+. ...++. .+.|+||+-|+.+=
T Consensus 312 ~AfVD--RADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkLP 389 (423)
T KOG0744|consen 312 VAFVD--RADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTVGLSGRTLRKLP 389 (423)
T ss_pred HHhhh--HhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhcCCccchHhhhh
Confidence 99999 999999999999999999999987542 11 0 0011 111222 25899999999886
Q ss_pred HHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhcc
Q psy7780 277 TEAGLMALRERRMKVTNEDFKKSKESVLYRKKE 309 (317)
Q Consensus 277 ~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~~ 309 (317)
--|... --...+|+.++|..|+-...+++.+
T Consensus 390 ~Laha~--y~~~~~v~~~~fl~al~ea~~k~~~ 420 (423)
T KOG0744|consen 390 LLAHAE--YFRTFTVDLSNFLLALLEAAKKLLS 420 (423)
T ss_pred HHHHHh--ccCCCccChHHHHHHHHHHHHHHhh
Confidence 543322 2234689999999998877766544
No 42
>KOG0742|consensus
Probab=99.88 E-value=4.9e-22 Score=184.00 Aligned_cols=198 Identities=22% Similarity=0.322 Sum_probs=147.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCC-ceEeecccccccccccCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAP-SIVFIDEIDAVGTKRYDSNS 157 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P-~Ii~iDEiD~l~~~r~~~~~ 157 (317)
-+|||||||||||+ -+|.+.|..+-.+.+.++.-. -.+....|+++|+.|++... -++||||.|+++..|...
T Consensus 386 NilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl-G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkt-- 462 (630)
T KOG0742|consen 386 NILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL-GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKT-- 462 (630)
T ss_pred heeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc-chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchh--
Confidence 35999999999999 899999999999998886542 12446689999999987664 478999999999888432
Q ss_pred CchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHH
Q psy7780 158 GGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 237 (317)
Q Consensus 158 ~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~ 237 (317)
..+......|+.||-. .|-.+ .+++++.+||+|..+|.|+-. |||..|+||+|.+++
T Consensus 463 ymSEaqRsaLNAlLfR-TGdqS--------------------rdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEE 519 (630)
T KOG0742|consen 463 YMSEAQRSALNALLFR-TGDQS--------------------RDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEE 519 (630)
T ss_pred hhcHHHHHHHHHHHHH-hcccc--------------------cceEEEeccCCccchhHHHHh--hhhheeecCCCChHH
Confidence 2233344566777643 22222 679999999999999999999 999999999999999
Q ss_pred HHHHHHHHhcCCCCC---c--------------------C----CCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Q psy7780 238 KRRIFNIHTSRMTLA---E--------------------D----VNLQELIMAKDDLSGADIKAICTEAGLMALRERRMK 290 (317)
Q Consensus 238 r~~Il~~~l~~~~~~---~--------------------~----~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~ 290 (317)
|..|+..|+.++-.. + . .-..+.|..|+||||++|..|+--....+.-...-.
T Consensus 520 Rfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQAavYgsedcv 599 (630)
T KOG0742|consen 520 RFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQAAVYGSEDCV 599 (630)
T ss_pred HHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcccchh
Confidence 999999998764211 0 0 114667889999999999999863322222333445
Q ss_pred cCHHHHHHHHHHHHh
Q psy7780 291 VTNEDFKKSKESVLY 305 (317)
Q Consensus 291 it~~d~~~al~~v~~ 305 (317)
++..-|.+.+...+.
T Consensus 600 Ld~~lf~e~v~ykv~ 614 (630)
T KOG0742|consen 600 LDEALFDERVDYKVQ 614 (630)
T ss_pred hHHHHHHHHHHHHHH
Confidence 666666666554443
No 43
>KOG0735|consensus
Probab=99.86 E-value=1.7e-21 Score=190.42 Aligned_cols=206 Identities=22% Similarity=0.261 Sum_probs=167.4
Q ss_pred hhHHHhhhcCCCchh---hhhhcC----CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeeccccccccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT----SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRY 153 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~----~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~ 153 (317)
|.+|++||+|||||. +++.+. -+++..++|+.+-........+.++.+|..|.+++|+||++|++|+|++..
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s- 510 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDCLASAS- 510 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccC-
Confidence 378999999999998 777666 468899999999877777778899999999999999999999999999843
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCC
Q psy7780 154 DSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLP 233 (317)
Q Consensus 154 ~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P 233 (317)
+..++........+..+++++-...... ...+.||++.+....|+|-|.+|++|+.++.+|.|
T Consensus 511 ~~e~~q~~~~~~rla~flnqvi~~y~~~-----------------~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap 573 (952)
T KOG0735|consen 511 SNENGQDGVVSERLAAFLNQVIKIYLKR-----------------NRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAP 573 (952)
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHHcc-----------------CcEEEEEEechhhhhcChhhcCccceEEEEecCCc
Confidence 2233444555566667775544332221 14578999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh----cCCCcCHHHHHHHHHHHH
Q psy7780 234 DEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRE----RRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 234 ~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~----~~~~it~~d~~~al~~v~ 304 (317)
+..+|.+||+..+++...+ ...|++-++..|+||.+.|+..++.+|...|..+ +.+.+|.++|.++++...
T Consensus 574 ~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~ 649 (952)
T KOG0735|consen 574 AVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFV 649 (952)
T ss_pred chhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcC
Confidence 9999999999998775532 3345666999999999999999999999888833 344899999999998765
No 44
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.2e-19 Score=177.39 Aligned_cols=201 Identities=43% Similarity=0.619 Sum_probs=179.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
..+++||||||||+ ++|++ +..++.+++++...+|.|+++..++.+|..|+..+|+++++||+|.+.+.+.. .
T Consensus 20 ~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~~~~~~~~~~~---~ 95 (494)
T COG0464 20 GVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDEIDALAPKRSS---D 95 (494)
T ss_pred CceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeechhhhcccCccc---c
Confidence 46799999999999 78888 77778899999999999999999999999999999999999999999999865 2
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
......++..+++..+|++. . +.+++++.||++..+|+++++||||++.+.++.|+.+.+
T Consensus 96 ~~~~~~~v~~~l~~~~d~~~-~-------------------~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 155 (494)
T COG0464 96 QGEVERRVVAQLLALMDGLK-R-------------------GQVIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGR 155 (494)
T ss_pred ccchhhHHHHHHHHhccccc-C-------------------CceEEEeecCCccccChhHhCccccceeeecCCCCHHHH
Confidence 22234567788888889887 3 338999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc------CCCcCHHHHHHHHHHHHhh
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRER------RMKVTNEDFKKSKESVLYR 306 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~------~~~it~~d~~~al~~v~~~ 306 (317)
.+|++.+...+....+.+...++..+.|++++++..+|.++.+.+.++. ...++.+|+.++++++...
T Consensus 156 ~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~~~~ 229 (494)
T COG0464 156 LEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPS 229 (494)
T ss_pred HHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHhcCcc
Confidence 9999999998888888899999999999999999999999999988875 4568999999999998653
No 45
>CHL00181 cbbX CbbX; Provisional
Probab=99.80 E-value=5.6e-19 Score=162.52 Aligned_cols=184 Identities=17% Similarity=0.232 Sum_probs=128.7
Q ss_pred hHHHhhhcCCCchh---hhhhcC---C----ceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeeccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---S----ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~----~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~ 151 (317)
+.+|+||||||||+ ++|+.+ | .+++.++++++.+.|+|+++..++.+|+.|. ++||||||+|.+...
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~ 137 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKP 137 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccC
Confidence 57999999999999 776654 2 3699999999999999999888888888764 479999999999754
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccCCCccee
Q psy7780 152 RYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIRPGRIDR 226 (317)
Q Consensus 152 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~rpgRf~~ 226 (317)
+.. .....+.+..| +..|+... ++++||++++... .++|++++ ||+.
T Consensus 138 ~~~--~~~~~e~~~~L---~~~me~~~---------------------~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~ 189 (287)
T CHL00181 138 DNE--RDYGSEAIEIL---LQVMENQR---------------------DDLVVIFAGYKDRMDKFYESNPGLSS--RIAN 189 (287)
T ss_pred CCc--cchHHHHHHHH---HHHHhcCC---------------------CCEEEEEeCCcHHHHHHHhcCHHHHH--hCCc
Confidence 321 12233444444 44444322 5677888876422 34699999 9999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHh------CCCCC-HHHHHHHHHHHHHHHHHh----cCCCcCHH
Q psy7780 227 KIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMA------KDDLS-GADIKAICTEAGLMALRE----RRMKVTNE 294 (317)
Q Consensus 227 ~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~------t~g~s-~~dl~~l~~~A~~~a~~~----~~~~it~~ 294 (317)
.|+|++|+.+++.+|++.++++.... .+.....+... .+.|. +++++++++.|......+ +...++.+
T Consensus 190 ~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~~~~~~~~~~~ 269 (287)
T CHL00181 190 HVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRIFESGGRVLTKA 269 (287)
T ss_pred eEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHcCCCCCCCHH
Confidence 99999999999999999998765432 11112222221 23444 899999999887654433 23344555
Q ss_pred HH
Q psy7780 295 DF 296 (317)
Q Consensus 295 d~ 296 (317)
|+
T Consensus 270 ~l 271 (287)
T CHL00181 270 DL 271 (287)
T ss_pred HH
Confidence 54
No 46
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.79 E-value=1.6e-18 Score=157.75 Aligned_cols=174 Identities=16% Similarity=0.194 Sum_probs=125.4
Q ss_pred hhHHHhhhcCCCchh---hhhhcC-------CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT-------SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGT 150 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~-------~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~ 150 (317)
++.+|+||||||||+ ++|+++ ..++++++++++.++|+|+++..++++|+.|. ++||||||+|.|..
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~ 119 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLAR 119 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhcc
Confidence 367899999999999 677653 24789999999999999999999999998774 47999999999963
Q ss_pred cccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccCCCcce
Q psy7780 151 KRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIRPGRID 225 (317)
Q Consensus 151 ~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~rpgRf~ 225 (317)
.. ... .....+..++..++... .++++|++++..+ .++|++++ ||.
T Consensus 120 ~~---~~~---~~~~~i~~Ll~~~e~~~---------------------~~~~vila~~~~~~~~~~~~~p~L~s--Rf~ 170 (261)
T TIGR02881 120 GG---EKD---FGKEAIDTLVKGMEDNR---------------------NEFVLILAGYSDEMDYFLSLNPGLRS--RFP 170 (261)
T ss_pred CC---ccc---hHHHHHHHHHHHHhccC---------------------CCEEEEecCCcchhHHHHhcChHHHh--ccc
Confidence 21 111 11234556666666542 4566666654322 37899999 999
Q ss_pred eEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHh---------CCCCCHHHHHHHHHHHHHHHHHh
Q psy7780 226 RKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMA---------KDDLSGADIKAICTEAGLMALRE 286 (317)
Q Consensus 226 ~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~---------t~g~s~~dl~~l~~~A~~~a~~~ 286 (317)
..|+||.++.+++.+|++.++...... ++..+..++.. ...-+++.+++++..|......+
T Consensus 171 ~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r 241 (261)
T TIGR02881 171 ISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQAVR 241 (261)
T ss_pred eEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998765433 12223333221 12246888999999887665543
No 47
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.78 E-value=4.9e-19 Score=182.12 Aligned_cols=192 Identities=21% Similarity=0.259 Sum_probs=143.7
Q ss_pred hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhh--hhhcCCchHHHHHHHHHHHhhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELI--QKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~--~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
..+|+||||||||+ ++|+.+ +..++.++++.+. .+|.|+.+..++++|+.+.++.|+||||||+|
T Consensus 205 n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih 284 (731)
T TIGR02639 205 NPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIH 284 (731)
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHH
Confidence 56789999999999 888876 7889999999988 57999999999999999988889999999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-----CCCCccccCC
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-----ETLDPALIRP 221 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-----~~Ld~al~rp 221 (317)
.+++.... .+++...+..|...|.. +.+.+|++||.. ..+|+|+.|
T Consensus 285 ~l~~~g~~--~~~~~~~~~~L~~~l~~--------------------------g~i~~IgaTt~~e~~~~~~~d~al~r- 335 (731)
T TIGR02639 285 TIVGAGAT--SGGSMDASNLLKPALSS--------------------------GKLRCIGSTTYEEYKNHFEKDRALSR- 335 (731)
T ss_pred HHhccCCC--CCccHHHHHHHHHHHhC--------------------------CCeEEEEecCHHHHHHHhhhhHHHHH-
Confidence 99876532 22233345555544432 789999999974 358999999
Q ss_pred CcceeEEEeCCCCHHHHHHHHHHHhcCC----CCC-cCCCHHHHHHhCCCCC-----HHHHHHHHHHHHHHHHHh----c
Q psy7780 222 GRIDRKIEFPLPDEKTKRRIFNIHTSRM----TLA-EDVNLQELIMAKDDLS-----GADIKAICTEAGLMALRE----R 287 (317)
Q Consensus 222 gRf~~~I~~~~P~~~~r~~Il~~~l~~~----~~~-~~~~~~~ia~~t~g~s-----~~dl~~l~~~A~~~a~~~----~ 287 (317)
||. .|+++.|+.+++.+|++.....+ .+. .+..+..++..+..|- |.---.++.+|+.....+ .
T Consensus 336 -Rf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~~~~~~~ 413 (731)
T TIGR02639 336 -RFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRLRPKAKK 413 (731)
T ss_pred -hCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhcCccccc
Confidence 997 79999999999999999765542 111 3334556666655543 444456777766533211 2
Q ss_pred CCCcCHHHHHHHHHHHH
Q psy7780 288 RMKVTNEDFKKSKESVL 304 (317)
Q Consensus 288 ~~~it~~d~~~al~~v~ 304 (317)
...|+.+|+.+++..+.
T Consensus 414 ~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 414 KANVSVKDIENVVAKMA 430 (731)
T ss_pred ccccCHHHHHHHHHHHh
Confidence 34699999999988764
No 48
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.77 E-value=4.2e-18 Score=156.66 Aligned_cols=173 Identities=17% Similarity=0.232 Sum_probs=124.3
Q ss_pred hHHHhhhcCCCchh---hhhhcC---C----ceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeeccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---S----ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~----~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~ 151 (317)
+.+|+||||||||+ ++|+.+ + .+|+.++++++..+|.|+++..++.+|+.|. +++|||||++.+.+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~ 136 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRP 136 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHcc---CcEEEEechhhhccC
Confidence 78999999999999 555544 2 2799999999999999999888999998774 489999999999754
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC--CCC---CCccccCCCccee
Q psy7780 152 RYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR--IET---LDPALIRPGRIDR 226 (317)
Q Consensus 152 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~--~~~---Ld~al~rpgRf~~ 226 (317)
+.. .....+.+. .++..|+... .+++||++++. .+. ++|++++ ||..
T Consensus 137 ~~~--~~~~~~~~~---~Ll~~le~~~---------------------~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~ 188 (284)
T TIGR02880 137 DNE--RDYGQEAIE---ILLQVMENQR---------------------DDLVVILAGYKDRMDSFFESNPGFSS--RVAH 188 (284)
T ss_pred CCc--cchHHHHHH---HHHHHHhcCC---------------------CCEEEEEeCCcHHHHHHHhhCHHHHh--hCCc
Confidence 321 122333444 4444444321 56778888764 333 5899999 9999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhC------CC-CCHHHHHHHHHHHHHHHHH
Q psy7780 227 KIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAK------DD-LSGADIKAICTEAGLMALR 285 (317)
Q Consensus 227 ~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t------~g-~s~~dl~~l~~~A~~~a~~ 285 (317)
.|+||.++.+++.+|++.++++.... +......+.... +. -++++++++++.|......
T Consensus 189 ~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~~ 255 (284)
T TIGR02880 189 HVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQAN 255 (284)
T ss_pred EEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999875432 111122333221 22 2589999999988765543
No 49
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.76 E-value=2.6e-18 Score=159.73 Aligned_cols=175 Identities=23% Similarity=0.281 Sum_probs=124.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhC----CceEeecccccccccccC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA----PSIVFIDEIDAVGTKRYD 154 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~----P~Ii~iDEiD~l~~~r~~ 154 (317)
+.+||||||||||| .+|+.++++|..+++.. .+-+.++++|+.|++.. ..|||+|||+.+...+
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q-- 120 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ-- 120 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhh--
Confidence 56799999999999 99999999999999854 56789999999996544 4799999999997654
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEc--CCCCCCCccccCCCcceeEEEeCC
Q psy7780 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMAT--NRIETLDPALIRPGRIDRKIEFPL 232 (317)
Q Consensus 155 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tT--N~~~~Ld~al~rpgRf~~~I~~~~ 232 (317)
|..|.-.++. +.|++|+|| |....|.+||++ |+ +++++.+
T Consensus 121 ---------QD~lLp~vE~--------------------------G~iilIGATTENPsF~ln~ALlS--R~-~vf~lk~ 162 (436)
T COG2256 121 ---------QDALLPHVEN--------------------------GTIILIGATTENPSFELNPALLS--RA-RVFELKP 162 (436)
T ss_pred ---------hhhhhhhhcC--------------------------CeEEEEeccCCCCCeeecHHHhh--hh-heeeeec
Confidence 3344444433 789999887 777889999999 98 4888999
Q ss_pred CCHHHHHHHHHHHhc--CCCCC------cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc-CCCcCHHHHHHHHHHH
Q psy7780 233 PDEKTKRRIFNIHTS--RMTLA------EDVNLQELIMAKDDLSGADIKAICTEAGLMALRER-RMKVTNEDFKKSKESV 303 (317)
Q Consensus 233 P~~~~r~~Il~~~l~--~~~~~------~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~-~~~it~~d~~~al~~v 303 (317)
.+.++..++++..+. ..++. ++...+.++..+.| |.+.+++..-+.+.... ...++.+++++++.+.
T Consensus 163 L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~ 238 (436)
T COG2256 163 LSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRALNLLELAALSAEPDEVLILELLEEILQRR 238 (436)
T ss_pred CCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhh
Confidence 999999999988432 22222 12234556666555 66665553322222221 2244578887777765
Q ss_pred Hhhh
Q psy7780 304 LYRK 307 (317)
Q Consensus 304 ~~~~ 307 (317)
....
T Consensus 239 ~~~~ 242 (436)
T COG2256 239 SARF 242 (436)
T ss_pred hhcc
Confidence 5433
No 50
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.76 E-value=2.1e-18 Score=150.64 Aligned_cols=166 Identities=18% Similarity=0.215 Sum_probs=109.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+.|||||||+|||| .+|++++.+|..++++.+ +....+..++....+ ..|||||||+.+...
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i------~k~~dl~~il~~l~~--~~ILFIDEIHRlnk~------- 116 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANELGVNFKITSGPAI------EKAGDLAAILTNLKE--GDILFIDEIHRLNKA------- 116 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--------SCHHHHHHHHT--T--T-EEEECTCCC--HH-------
T ss_pred eEEEECCCccchhHHHHHHHhccCCCeEeccchhh------hhHHHHHHHHHhcCC--CcEEEEechhhccHH-------
Confidence 57999999999999 999999999999988654 223455556555543 479999999998544
Q ss_pred chhHHHHHHHHHHHHhc-----CCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCC
Q psy7780 159 GEREIQRTMLELLNQLD-----GFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLP 233 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P 233 (317)
.+..|...++... |..... + .....+ .++.+|+||++...|.++|+. ||.....+..+
T Consensus 117 ----~qe~LlpamEd~~idiiiG~g~~a---r-------~~~~~l-~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y 179 (233)
T PF05496_consen 117 ----QQEILLPAMEDGKIDIIIGKGPNA---R-------SIRINL-PPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFY 179 (233)
T ss_dssp ----HHHHHHHHHHCSEEEEEBSSSSS----B-------EEEEE-----EEEEEESSGCCTSHCCCT--TSSEEEE----
T ss_pred ----HHHHHHHHhccCeEEEEecccccc---c-------eeeccC-CCceEeeeeccccccchhHHh--hcceecchhcC
Confidence 3555655555211 111000 0 000111 568999999999999999999 99988899999
Q ss_pred CHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHH
Q psy7780 234 DEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAG 280 (317)
Q Consensus 234 ~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~ 280 (317)
+.++..+|++......++. .+....+||.++.| +|+-..++++++.
T Consensus 180 ~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rvr 226 (233)
T PF05496_consen 180 SEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRVR 226 (233)
T ss_dssp THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence 9999999999887776665 33346778888888 8998888888653
No 51
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.76 E-value=4e-18 Score=174.27 Aligned_cols=192 Identities=26% Similarity=0.322 Sum_probs=144.6
Q ss_pred hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhh--hhhcCCchHHHHHHHHHHHhhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELI--QKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~--~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
..||+||||||||+ ++|+.. ++.++.++.+.++ .+|.|+.+..++.+|..+.+..++||||||+|
T Consensus 209 n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh 288 (758)
T PRK11034 209 NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIH 288 (758)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHH
Confidence 56899999999999 666543 6778888888777 56889999999999999988889999999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccCC
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIRP 221 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~rp 221 (317)
.+++.+.. ++++.+..+++..++.. +.+.+|++||.++ ..|++|.|
T Consensus 289 ~L~g~g~~--~~g~~d~~nlLkp~L~~--------------------------g~i~vIgATt~~E~~~~~~~D~AL~r- 339 (758)
T PRK11034 289 TIIGAGAA--SGGQVDAANLIKPLLSS--------------------------GKIRVIGSTTYQEFSNIFEKDRALAR- 339 (758)
T ss_pred HHhccCCC--CCcHHHHHHHHHHHHhC--------------------------CCeEEEecCChHHHHHHhhccHHHHh-
Confidence 99877532 23344455556655543 7899999999865 58999999
Q ss_pred CcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHH-----HHHh-----CCCCCHHHHHHHHHHHHHHHH----Hhc
Q psy7780 222 GRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQE-----LIMA-----KDDLSGADIKAICTEAGLMAL----RER 287 (317)
Q Consensus 222 gRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~-----ia~~-----t~g~s~~dl~~l~~~A~~~a~----~~~ 287 (317)
||+ .|.++.|+.+++..||+.+..++....++.+.+ ++.. +..+-|.....++.+|+.... ..+
T Consensus 340 -RFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~~~~~~~~~ 417 (758)
T PRK11034 340 -RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKR 417 (758)
T ss_pred -hCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhhccCccccc
Confidence 996 899999999999999998876655444444322 2222 334567788889998875431 223
Q ss_pred CCCcCHHHHHHHHHHHH
Q psy7780 288 RMKVTNEDFKKSKESVL 304 (317)
Q Consensus 288 ~~~it~~d~~~al~~v~ 304 (317)
+..|+.+|+.+.+.+..
T Consensus 418 ~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 418 KKTVNVADIESVVARIA 434 (758)
T ss_pred ccccChhhHHHHHHHHh
Confidence 45688888888776543
No 52
>KOG2004|consensus
Probab=99.75 E-value=1.6e-18 Score=169.90 Aligned_cols=145 Identities=22% Similarity=0.303 Sum_probs=119.5
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhh---------hhcCCchHHHHHHHHHHHhhCCceEeecccccccc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ---------KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGT 150 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~---------~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~ 150 (317)
..|+||||+|||+ +||..+|..|++++.+.+.+ .|+|..+..+-+....+.-.+| +++|||+|.++.
T Consensus 441 lCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~ 519 (906)
T KOG2004|consen 441 LCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS 519 (906)
T ss_pred EEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC
Confidence 4589999999999 99999999999998766543 4999999999999999999888 999999999983
Q ss_pred cccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEe
Q psy7780 151 KRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEF 230 (317)
Q Consensus 151 ~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~ 230 (317)
.- .++.. + .||+.+|.-++....+....+.+|+ .+|++|+|+|..+.||++|+. |++ .|++
T Consensus 520 g~--qGDPa-----s---ALLElLDPEQNanFlDHYLdVp~DL------SkVLFicTAN~idtIP~pLlD--RME-vIel 580 (906)
T KOG2004|consen 520 GH--QGDPA-----S---ALLELLDPEQNANFLDHYLDVPVDL------SKVLFICTANVIDTIPPPLLD--RME-VIEL 580 (906)
T ss_pred CC--CCChH-----H---HHHHhcChhhccchhhhccccccch------hheEEEEeccccccCChhhhh--hhh-eeec
Confidence 21 12222 2 5666677776665544444444555 899999999999999999999 996 8999
Q ss_pred CCCCHHHHHHHHHHHhc
Q psy7780 231 PLPDEKTKRRIFNIHTS 247 (317)
Q Consensus 231 ~~P~~~~r~~Il~~~l~ 247 (317)
+-+..++..+|.+.|+-
T Consensus 581 sGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 581 SGYVAEEKVKIAERYLI 597 (906)
T ss_pred cCccHHHHHHHHHHhhh
Confidence 99999999999999974
No 53
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.74 E-value=1.5e-17 Score=156.18 Aligned_cols=192 Identities=14% Similarity=0.120 Sum_probs=136.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+.+|+||||||||+ ++|++++..+..++++.+. ....+..++... ..++||||||+|.+....
T Consensus 53 ~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~------~~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~------ 118 (328)
T PRK00080 53 HVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE------KPGDLAAILTNL--EEGDVLFIDEIHRLSPVV------ 118 (328)
T ss_pred cEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc------ChHHHHHHHHhc--ccCCEEEEecHhhcchHH------
Confidence 67899999999999 9999999988887766432 223455555543 346899999999985321
Q ss_pred chhHHHHHHHHHHHHhcC--CCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHH
Q psy7780 159 GEREIQRTMLELLNQLDG--FDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 236 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~--~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~ 236 (317)
+..+..+++.... +-....+ .......+ .++.+|++||++..++++|++ ||...+.|+.|+.+
T Consensus 119 -----~e~l~~~~e~~~~~~~l~~~~~-------~~~~~~~l-~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~ 183 (328)
T PRK00080 119 -----EEILYPAMEDFRLDIMIGKGPA-------ARSIRLDL-PPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVE 183 (328)
T ss_pred -----HHHHHHHHHhcceeeeeccCcc-------ccceeecC-CCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHH
Confidence 2233333332110 0000000 00001112 347899999999999999999 99989999999999
Q ss_pred HHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q psy7780 237 TKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESV 303 (317)
Q Consensus 237 ~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v 303 (317)
++.+|++......++. ++..+..+++.+.| +++.+..+++.+...|..++...|+.+++.++++.+
T Consensus 184 e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 184 ELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVRDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 9999999887765544 33346788888887 678999999988888877666789999999999764
No 54
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.73 E-value=1.8e-17 Score=171.47 Aligned_cols=200 Identities=22% Similarity=0.271 Sum_probs=131.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhh---------hhhcCCchHHHHHHHHHHHhhCCceEeeccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELI---------QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~---------~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
+.+|+||||||||+ ++|++++.+|++++++.+. ..|+|.....+.+.|..+..+.| ||||||||.+.
T Consensus 349 ~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~ 427 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIG 427 (775)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcC
Confidence 47899999999999 9999999999999876542 35788888888899998877766 89999999998
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEE
Q psy7780 150 TKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIE 229 (317)
Q Consensus 150 ~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~ 229 (317)
+...+ ...++ |+..+|...... +..+........+++++|+|||+++.||++|++ ||+ .|+
T Consensus 428 ~~~~~-------~~~~a---Ll~~ld~~~~~~------f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~ 488 (775)
T TIGR00763 428 SSFRG-------DPASA---LLEVLDPEQNNA------FSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIE 488 (775)
T ss_pred CccCC-------CHHHH---HHHhcCHHhcCc------cccccCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEe
Confidence 54311 11233 444444211100 000000000111578999999999999999999 996 799
Q ss_pred eCCCCHHHHHHHHHHHhc-----CCCCC------cCCCHHHHHHh-CCCCCHHHHHH----HHHHHHHHHHHhcC-----
Q psy7780 230 FPLPDEKTKRRIFNIHTS-----RMTLA------EDVNLQELIMA-KDDLSGADIKA----ICTEAGLMALRERR----- 288 (317)
Q Consensus 230 ~~~P~~~~r~~Il~~~l~-----~~~~~------~~~~~~~ia~~-t~g~s~~dl~~----l~~~A~~~a~~~~~----- 288 (317)
|+.|+.+++.+|++.++. ...+. .+..+..+++. +..+..++|+. +|+.++...+..+.
T Consensus 489 ~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~~~~~~~~~~~~~~~~~~~~ 568 (775)
T TIGR00763 489 LSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIEKICRKAAVKLVEQGEKKKSE 568 (775)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHHHHHHHHHHHHHhccCcccCC
Confidence 999999999999998862 11221 22234555553 33445555554 55555443332221
Q ss_pred ---CCcCHHHHHHHHH
Q psy7780 289 ---MKVTNEDFKKSKE 301 (317)
Q Consensus 289 ---~~it~~d~~~al~ 301 (317)
..++.+++.+-+.
T Consensus 569 ~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 569 AESVVITPDNLKKYLG 584 (775)
T ss_pred cccccCCHHHHHHhcC
Confidence 3677777655543
No 55
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.71 E-value=4.3e-17 Score=145.40 Aligned_cols=193 Identities=15% Similarity=0.139 Sum_probs=146.8
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
|+||+||||.|||| .+|+|+|..+-..++..+ +.+..+-.++.....+ .|+|||||+++.+.-
T Consensus 54 HvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l------eK~gDlaaiLt~Le~~--DVLFIDEIHrl~~~v------ 119 (332)
T COG2255 54 HVLLFGPPGLGKTTLAHIIANELGVNLKITSGPAL------EKPGDLAAILTNLEEG--DVLFIDEIHRLSPAV------ 119 (332)
T ss_pred eEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccc------cChhhHHHHHhcCCcC--CeEEEehhhhcChhH------
Confidence 88999999999999 999999999999988876 3355666677665555 799999999996542
Q ss_pred chhHHHHHHHHHHHHh--cCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHH
Q psy7780 159 GEREIQRTMLELLNQL--DGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 236 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~l--d~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~ 236 (317)
..+|.-.++-+ |=.-+...+.+ ..+..+ .++.+|+||.+...|...|+. ||....++..++.+
T Consensus 120 -----EE~LYpaMEDf~lDI~IG~gp~Ar-------sv~ldL-ppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~ 184 (332)
T COG2255 120 -----EEVLYPAMEDFRLDIIIGKGPAAR-------SIRLDL-PPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVE 184 (332)
T ss_pred -----HHHhhhhhhheeEEEEEccCCccc-------eEeccC-CCeeEeeeccccccccchhHH--hcCCeeeeecCCHH
Confidence 33333333311 10000000000 011112 578999999999999999999 99999999999999
Q ss_pred HHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Q psy7780 237 TKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 237 ~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~ 304 (317)
+..+|+++....+.+. .+....+||+++.| ||+--.+|+++..-+|.-++...|+.+-..+|++...
T Consensus 185 eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~aL~~L~ 252 (332)
T COG2255 185 ELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRDFAQVKGDGDIDRDIADKALKMLD 252 (332)
T ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHhC
Confidence 9999999988777665 34456788988888 8999999999999999988888898888888887643
No 56
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.70 E-value=8.9e-17 Score=149.15 Aligned_cols=192 Identities=14% Similarity=0.115 Sum_probs=131.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+.+|+||||||||+ ++|++++..+..+.++.+.. ...+...+... ..+.+|||||++.+.+..
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------~~~l~~~l~~~--~~~~vl~iDEi~~l~~~~------ 97 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------PGDLAAILTNL--EEGDVLFIDEIHRLSPAV------ 97 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------chhHHHHHHhc--ccCCEEEEehHhhhCHHH------
Confidence 57899999999999 99999998887776554321 12233333322 346899999999985321
Q ss_pred chhHHHHHHHHHHHHhcCC--CcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHH
Q psy7780 159 GEREIQRTMLELLNQLDGF--DSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 236 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~--~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~ 236 (317)
+..+..+++..... -....+ .......+ .++.+|++||++..+++++++ ||...+.+++|+.+
T Consensus 98 -----~e~l~~~~~~~~~~~v~~~~~~-------~~~~~~~~-~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~ 162 (305)
T TIGR00635 98 -----EELLYPAMEDFRLDIVIGKGPS-------ARSVRLDL-PPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVE 162 (305)
T ss_pred -----HHHhhHHHhhhheeeeeccCcc-------ccceeecC-CCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHH
Confidence 22333333221100 000000 00000112 358899999999999999999 99889999999999
Q ss_pred HHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q psy7780 237 TKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESV 303 (317)
Q Consensus 237 ~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v 303 (317)
++.++++......... ++..++.+++.+.| .++.+.+++..+...|...+...++.+++.+++..+
T Consensus 163 e~~~il~~~~~~~~~~~~~~al~~ia~~~~G-~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 163 ELAEIVSRSAGLLNVEIEPEAALEIARRSRG-TPRIANRLLRRVRDFAQVRGQKIINRDIALKALEML 229 (305)
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-CcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 9999999887654433 23346778888888 568888999988777766666779999999998873
No 57
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.2e-17 Score=162.63 Aligned_cols=206 Identities=22% Similarity=0.305 Sum_probs=147.6
Q ss_pred echhhH-HHhhhcCCCchh---hhhhcCCceEEEEechhhhh---------hhcCCchHHHHHHHHHHHhhCCceEeecc
Q psy7780 78 RVVGSE-LIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ---------KYLGDGPKLVRELFRVAEEHAPSIVFIDE 144 (317)
Q Consensus 78 ~i~g~~-Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~---------~~~g~~~~~l~~~f~~a~~~~P~Ii~iDE 144 (317)
.+.||+ +|.||||+|||+ .||+.++..|++++.+.+.+ .|+|..+..|-+-...|...+| +++|||
T Consensus 347 ~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP-v~LLDE 425 (782)
T COG0466 347 KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP-VFLLDE 425 (782)
T ss_pred cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCC-eEEeec
Confidence 344454 589999999999 99999999999999877654 4999999999999999999998 999999
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcc
Q psy7780 145 IDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRI 224 (317)
Q Consensus 145 iD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf 224 (317)
||.++..-.+ +.. +.+|+-+|.-++....++...+.+|+ .+|++|+|+|+.+.||.+|+. |+
T Consensus 426 IDKm~ss~rG--DPa--------SALLEVLDPEQN~~F~DhYLev~yDL------S~VmFiaTANsl~tIP~PLlD--RM 487 (782)
T COG0466 426 IDKMGSSFRG--DPA--------SALLEVLDPEQNNTFSDHYLEVPYDL------SKVMFIATANSLDTIPAPLLD--RM 487 (782)
T ss_pred hhhccCCCCC--ChH--------HHHHhhcCHhhcCchhhccccCccch------hheEEEeecCccccCChHHhc--ce
Confidence 9999765322 111 25777778776665444444444444 899999999999999999999 99
Q ss_pred eeEEEeCCCCHHHHHHHHHHHhcC-----CCCC------cCCCHHHHHHh-C--CCCC--HHHHHHHHHHHHHHHHHhcC
Q psy7780 225 DRKIEFPLPDEKTKRRIFNIHTSR-----MTLA------EDVNLQELIMA-K--DDLS--GADIKAICTEAGLMALRERR 288 (317)
Q Consensus 225 ~~~I~~~~P~~~~r~~Il~~~l~~-----~~~~------~~~~~~~ia~~-t--~g~s--~~dl~~l~~~A~~~a~~~~~ 288 (317)
+ +|+++-++.++..+|.+.|+=. .++. .+..+..+.+. | .|.- -+.|..+|+.++..-+....
T Consensus 488 E-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~ 566 (782)
T COG0466 488 E-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKE 566 (782)
T ss_pred e-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCc
Confidence 6 9999999999999999999632 2222 11223334433 1 1211 34566777776655544332
Q ss_pred C---CcCHHHHHHHHHHH
Q psy7780 289 M---KVTNEDFKKSKESV 303 (317)
Q Consensus 289 ~---~it~~d~~~al~~v 303 (317)
. .++..++.+-+-..
T Consensus 567 k~~~~i~~~~l~~yLG~~ 584 (782)
T COG0466 567 KSIVKIDEKNLKKYLGVP 584 (782)
T ss_pred ccceeeCHHHHHHHhCCc
Confidence 2 46666665554433
No 58
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.68 E-value=5.6e-17 Score=161.00 Aligned_cols=213 Identities=21% Similarity=0.257 Sum_probs=139.4
Q ss_pred CCceEeechh------------------hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhh-------
Q psy7780 72 TSATFLRVVG------------------SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSEL------- 113 (317)
Q Consensus 72 ~~~~~~~i~g------------------~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l------- 113 (317)
++.+|+++.| |+||+||||||||+ ++++++ +.+|+.++|+..
T Consensus 60 rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~ 139 (531)
T TIGR02902 60 RPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGI 139 (531)
T ss_pred CcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCcccc
Confidence 5566777666 78999999999999 554421 468999998642
Q ss_pred hhhhcCCchHHH----------------HHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHh---
Q psy7780 114 IQKYLGDGPKLV----------------RELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQL--- 174 (317)
Q Consensus 114 ~~~~~g~~~~~l----------------~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l--- 174 (317)
.+...|.....+ ...+. +....+|||||+|.+... .+..|..+++.-
T Consensus 140 ~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~---~a~gG~L~IdEI~~L~~~-----------~q~~LL~~Le~~~~~ 205 (531)
T TIGR02902 140 ADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVT---RAHGGVLFIDEIGELHPV-----------QMNKLLKVLEDRKVF 205 (531)
T ss_pred chhhcCCcccchhccccccccCCcccccCchhh---ccCCcEEEEechhhCCHH-----------HHHHHHHHHHhCeee
Confidence 111111100000 00111 222479999999998543 345555555431
Q ss_pred -cCCCcccccccchhhhcccccccCCCCeEEEEE-cCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC
Q psy7780 175 -DGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMA-TNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA 252 (317)
Q Consensus 175 -d~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~t-TN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~ 252 (317)
+.-.....+...+.+.++.+....+.++.+|++ ||.|+.|+|++++ ||. .|+|++++.+++.+|++..+++..+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~Il~~~a~k~~i~ 282 (531)
T TIGR02902 206 LDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKEIAKNAAEKIGIN 282 (531)
T ss_pred eccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 110011111222333344444455666677655 5679999999999 995 78999999999999999998876544
Q ss_pred -cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q psy7780 253 -EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESV 303 (317)
Q Consensus 253 -~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v 303 (317)
++..++.++..+ .+++++.++++.|+..|..+++..|+.+|+++++..-
T Consensus 283 is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 283 LEKHALELIVKYA--SNGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENG 332 (531)
T ss_pred cCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCc
Confidence 223345555544 3899999999999999988888899999999998743
No 59
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.67 E-value=3.2e-16 Score=162.88 Aligned_cols=200 Identities=18% Similarity=0.228 Sum_probs=142.0
Q ss_pred CCceEeechh------------------hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhh--hhhc
Q psy7780 72 TSATFLRVVG------------------SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELI--QKYL 118 (317)
Q Consensus 72 ~~~~~~~i~g------------------~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~--~~~~ 118 (317)
++..++++.| ..+|+|+||||||+ .+|+.+ +..++.++.+.+. .+|.
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ 261 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVK 261 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccc
Confidence 5567777777 45688999999999 777654 3678888888876 3688
Q ss_pred CCchHHHHHHHHHHHh-hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccccc
Q psy7780 119 GDGPKLVRELFRVAEE-HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIY 197 (317)
Q Consensus 119 g~~~~~l~~~f~~a~~-~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 197 (317)
|+.+..++.+|+.++. ..++||||||++.+.+.++.. +......+|...|..
T Consensus 262 ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~---~~~d~~n~Lkp~l~~------------------------ 314 (852)
T TIGR03345 262 GEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQA---GQGDAANLLKPALAR------------------------ 314 (852)
T ss_pred hHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcc---ccccHHHHhhHHhhC------------------------
Confidence 9999999999999975 457999999999998775321 122233344444432
Q ss_pred CCCCeEEEEEcCCCC-----CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCC----C-cCCCHHHHHHhCCCC
Q psy7780 198 LPGDVKVIMATNRIE-----TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTL----A-EDVNLQELIMAKDDL 267 (317)
Q Consensus 198 ~~~~v~vI~tTN~~~-----~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~----~-~~~~~~~ia~~t~g~ 267 (317)
+.+.+|+||+..+ .+|+||.| ||. .|.++.|+.+++..||+.+.+.+.. . .+..+..++..+.+|
T Consensus 315 --G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 315 --GELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred --CCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 7899999998743 49999999 996 8999999999999998766544321 1 344466677776654
Q ss_pred -----CHHHHHHHHHHHHHHHH-HhcCCCcCHHHHHHHHHHH
Q psy7780 268 -----SGADIKAICTEAGLMAL-RERRMKVTNEDFKKSKESV 303 (317)
Q Consensus 268 -----s~~dl~~l~~~A~~~a~-~~~~~~it~~d~~~al~~v 303 (317)
-|.-.-.++.+|+.... .........+++.+.+..+
T Consensus 390 i~~r~LPDKAIdlldea~a~~~~~~~~~p~~~~~~~~~~~~~ 431 (852)
T TIGR03345 390 IPGRQLPDKAVSLLDTACARVALSQNATPAALEDLRRRIAAL 431 (852)
T ss_pred cccccCccHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 34455577888765443 3344455556665555443
No 60
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.63 E-value=7.6e-16 Score=160.50 Aligned_cols=147 Identities=20% Similarity=0.267 Sum_probs=116.9
Q ss_pred CCceEeechh------------------hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhh--hhhc
Q psy7780 72 TSATFLRVVG------------------SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELI--QKYL 118 (317)
Q Consensus 72 ~~~~~~~i~g------------------~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~--~~~~ 118 (317)
++..++++.| ..+|+||||||||+ ++|..+ +.+++.++.+.++ .+|.
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~ 252 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYR 252 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchh
Confidence 4556777777 45688999999999 777776 7899999999877 5688
Q ss_pred CCchHHHHHHHHHHHh-hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccccc
Q psy7780 119 GDGPKLVRELFRVAEE-HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIY 197 (317)
Q Consensus 119 g~~~~~l~~~f~~a~~-~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 197 (317)
|+.+..++.+|+.+.. ..|+||||||++.+.+...+ .+......+|...+..
T Consensus 253 g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~---~~~~d~~~~lkp~l~~------------------------ 305 (857)
T PRK10865 253 GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA---DGAMDAGNMLKPALAR------------------------ 305 (857)
T ss_pred hhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCC---ccchhHHHHhcchhhc------------------------
Confidence 9999999999998644 56899999999999876532 2223345555544432
Q ss_pred CCCCeEEEEEcCCCC-----CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCC
Q psy7780 198 LPGDVKVIMATNRIE-----TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMT 250 (317)
Q Consensus 198 ~~~~v~vI~tTN~~~-----~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~ 250 (317)
+.+.+|+||+..+ .+|+|+.| ||+ .|.++.|+.+++..|++.+..++.
T Consensus 306 --g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~~e 358 (857)
T PRK10865 306 --GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKERYE 358 (857)
T ss_pred --CCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhhhc
Confidence 7899999999977 48999999 997 688999999999999988876543
No 61
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.62 E-value=3.4e-15 Score=144.36 Aligned_cols=170 Identities=23% Similarity=0.270 Sum_probs=121.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHh----hCCceEeecccccccccccC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE----HAPSIVFIDEIDAVGTKRYD 154 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~----~~P~Ii~iDEiD~l~~~r~~ 154 (317)
+.+|+||||||||+ ++|+.++..|+.++++. .+...++.+++.+.. ....||||||+|.+...
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~-------~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~--- 107 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGATDAPFEALSAVT-------SGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA--- 107 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc-------ccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH---
Confidence 56899999999999 99999999999998864 234566777777642 24589999999987432
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEc--CCCCCCCccccCCCcceeEEEeCC
Q psy7780 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMAT--NRIETLDPALIRPGRIDRKIEFPL 232 (317)
Q Consensus 155 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tT--N~~~~Ld~al~rpgRf~~~I~~~~ 232 (317)
.+..|...++. +.+++|++| |....+++++++ || ..+.|++
T Consensus 108 --------~q~~LL~~le~--------------------------~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ 150 (413)
T PRK13342 108 --------QQDALLPHVED--------------------------GTITLIGATTENPSFEVNPALLS--RA-QVFELKP 150 (413)
T ss_pred --------HHHHHHHHhhc--------------------------CcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCC
Confidence 23344444332 556777765 445689999999 99 6899999
Q ss_pred CCHHHHHHHHHHHhcCC--CC-C-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Q psy7780 233 PDEKTKRRIFNIHTSRM--TL-A-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 233 P~~~~r~~Il~~~l~~~--~~-~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~ 304 (317)
|+.++...+++..+... ++ . .+..+..+++.+.| .++.+.++++.+... ...|+.+++.+++....
T Consensus 151 ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~~~-----~~~It~~~v~~~~~~~~ 220 (413)
T PRK13342 151 LSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAALG-----VDSITLELLEEALQKRA 220 (413)
T ss_pred CCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHc-----cCCCCHHHHHHHHhhhh
Confidence 99999999999876542 11 1 22235567777654 666666777665543 45689999988887653
No 62
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.61 E-value=2.3e-15 Score=147.16 Aligned_cols=188 Identities=17% Similarity=0.198 Sum_probs=127.5
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeeccccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRY 153 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~ 153 (317)
|.+|||+||||||+ ++|+++ +..++++++.++...+..........-|..... .+.+|+|||++.+..++.
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~dlLiiDDi~~l~~~~~ 228 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYR-SVDVLLIDDIQFLAGKER 228 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHh-cCCEEEEehhhhhcCCHH
Confidence 57899999999999 888876 677999999988766543322111122322222 468999999999865431
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC---CCccccCCCcce--eEE
Q psy7780 154 DSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET---LDPALIRPGRID--RKI 228 (317)
Q Consensus 154 ~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~---Ld~al~rpgRf~--~~I 228 (317)
.+..+..+++.+- .. +..++|+++..|.. +++.+++ ||. ..+
T Consensus 229 ---------~~~~l~~~~n~l~---~~-------------------~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v 275 (450)
T PRK00149 229 ---------TQEEFFHTFNALH---EA-------------------GKQIVLTSDRPPKELPGLEERLRS--RFEWGLTV 275 (450)
T ss_pred ---------HHHHHHHHHHHHH---HC-------------------CCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeE
Confidence 1222333332221 11 33445555555555 6789999 996 589
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q psy7780 229 EFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 229 ~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~ 305 (317)
++.+|+.++|..|++......++. ++..++.||....| +.++|..+++.....+...+ ..||.+.+.++++.+..
T Consensus 276 ~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~~-~~it~~~~~~~l~~~~~ 351 (450)
T PRK00149 276 DIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLTG-KPITLELAKEALKDLLA 351 (450)
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhhc
Confidence 999999999999999998754433 33346777777666 78888888887766665554 45899999999988753
No 63
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.60 E-value=1.4e-14 Score=137.72 Aligned_cols=192 Identities=21% Similarity=0.268 Sum_probs=127.5
Q ss_pred hhHHHhhhcCCCchh---hhhhcCC---------ceEEEEechhhhh----------hhc--CC--------chHHHHHH
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTS---------ATFLRVVGSELIQ----------KYL--GD--------GPKLVREL 128 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~---------~~~~~v~~s~l~~----------~~~--g~--------~~~~l~~~ 128 (317)
+..+++||||||||+ ++++++. +.+++++|....+ ... |. ....++.+
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l 120 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRL 120 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHH
Confidence 367899999999999 5655432 6788898854321 111 11 12234555
Q ss_pred HHHHHh-hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEE
Q psy7780 129 FRVAEE-HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMA 207 (317)
Q Consensus 129 f~~a~~-~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~t 207 (317)
++.... ..+.||+|||+|.+.... +..+.+++...+..... ..++.+|++
T Consensus 121 ~~~l~~~~~~~vlvIDE~d~L~~~~-----------~~~L~~l~~~~~~~~~~------------------~~~v~lI~i 171 (365)
T TIGR02928 121 YKELNERGDSLIIVLDEIDYLVGDD-----------DDLLYQLSRARSNGDLD------------------NAKVGVIGI 171 (365)
T ss_pred HHHHHhcCCeEEEEECchhhhccCC-----------cHHHHhHhccccccCCC------------------CCeEEEEEE
Confidence 655543 446899999999997221 12344444331111100 056889999
Q ss_pred cCCCC---CCCccccCCCcce-eEEEeCCCCHHHHHHHHHHHhcCC---CCCcCCCHHH---HHHhCCCCCHHHHHHHHH
Q psy7780 208 TNRIE---TLDPALIRPGRID-RKIEFPLPDEKTKRRIFNIHTSRM---TLAEDVNLQE---LIMAKDDLSGADIKAICT 277 (317)
Q Consensus 208 TN~~~---~Ld~al~rpgRf~-~~I~~~~P~~~~r~~Il~~~l~~~---~~~~~~~~~~---ia~~t~g~s~~dl~~l~~ 277 (317)
+|.++ .+++.+.+ ||. ..++|++++.++..+|++..++.. ..-.+..++. ++..+.| ..+.+..+|+
T Consensus 172 ~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G-d~R~al~~l~ 248 (365)
T TIGR02928 172 SNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHG-DARKAIDLLR 248 (365)
T ss_pred ECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence 99886 58888888 774 679999999999999999987521 1111111222 3344455 4666677899
Q ss_pred HHHHHHHHhcCCCcCHHHHHHHHHHHH
Q psy7780 278 EAGLMALRERRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 278 ~A~~~a~~~~~~~it~~d~~~al~~v~ 304 (317)
.|+..|..++...|+.+|+.+|+..+.
T Consensus 249 ~a~~~a~~~~~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 249 VAGEIAEREGAERVTEDHVEKAQEKIE 275 (365)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 999999998889999999999988774
No 64
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.60 E-value=4.6e-15 Score=143.17 Aligned_cols=187 Identities=17% Similarity=0.204 Sum_probs=125.5
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEechhhhhhhcCCch-HHHHHHHHHHHhhCCceEeecccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVVGSELIQKYLGDGP-KLVRELFRVAEEHAPSIVFIDEIDAVGTKR 152 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s~l~~~~~g~~~-~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r 152 (317)
|.+|||+||+|||+ ++++++ +..++++++.++...+..... ..+..+.+..+ .+.+|+|||+|.+.+++
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~ 215 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKE 215 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCH
Confidence 56899999999999 777776 678999999887765432211 11222222222 35799999999986543
Q ss_pred cCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC---CCccccCCCcce--eE
Q psy7780 153 YDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET---LDPALIRPGRID--RK 227 (317)
Q Consensus 153 ~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~---Ld~al~rpgRf~--~~ 227 (317)
..+..+..+++.+- .. +..+||+++..|.. +++.+++ ||. ..
T Consensus 216 ---------~~~~~l~~~~n~~~---~~-------------------~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~ 262 (405)
T TIGR00362 216 ---------RTQEEFFHTFNALH---EN-------------------GKQIVLTSDRPPKELPGLEERLRS--RFEWGLV 262 (405)
T ss_pred ---------HHHHHHHHHHHHHH---HC-------------------CCCEEEecCCCHHHHhhhhhhhhh--hccCCeE
Confidence 11223333333321 11 33345555555554 6688998 996 47
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q psy7780 228 IEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 228 I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~ 305 (317)
+++++|+.++|..|++..+...++. ++..++.+|....+ +.+++..+++.....|...+ ..||.+.+.+++.....
T Consensus 263 v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~~~-~~it~~~~~~~L~~~~~ 339 (405)
T TIGR00362 263 VDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASLTG-KPITLELAKEALKDLLR 339 (405)
T ss_pred EEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhcc
Confidence 9999999999999999998765544 34446777877665 78888888887766665444 55888888888887643
No 65
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.60 E-value=9.9e-15 Score=152.51 Aligned_cols=170 Identities=19% Similarity=0.225 Sum_probs=124.6
Q ss_pred hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhh--hhhcCCchHHHHHHHHHHHhh-CCceEeeccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELI--QKYLGDGPKLVRELFRVAEEH-APSIVFIDEI 145 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~--~~~~g~~~~~l~~~f~~a~~~-~P~Ii~iDEi 145 (317)
..+|+||||||||+ ++|..+ +.+++.++.+.++ .+|.|+.++.++.+|+.+... .|+||||||+
T Consensus 196 n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEi 275 (852)
T TIGR03346 196 NPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDEL 275 (852)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccH
Confidence 44678999999999 667664 7889999988886 568999999999999998764 5899999999
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccC
Q psy7780 146 DAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIR 220 (317)
Q Consensus 146 D~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~r 220 (317)
+.+.+..... +.....+.|...+. + +.+.+|++||..+ .+|+++.|
T Consensus 276 h~l~~~g~~~---~~~d~~~~Lk~~l~-------~-------------------g~i~~IgaTt~~e~r~~~~~d~al~r 326 (852)
T TIGR03346 276 HTLVGAGKAE---GAMDAGNMLKPALA-------R-------------------GELHCIGATTLDEYRKYIEKDAALER 326 (852)
T ss_pred HHhhcCCCCc---chhHHHHHhchhhh-------c-------------------CceEEEEeCcHHHHHHHhhcCHHHHh
Confidence 9998654221 12223333333322 2 7899999999864 48999999
Q ss_pred CCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCC-----CHHHHHHhCCC-----CCHHHHHHHHHHHHHHH
Q psy7780 221 PGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDV-----NLQELIMAKDD-----LSGADIKAICTEAGLMA 283 (317)
Q Consensus 221 pgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~-----~~~~ia~~t~g-----~s~~dl~~l~~~A~~~a 283 (317)
||. .|.++.|+.+++..|++.+..++.....+ .+..++..+.+ +-|.---.++.+|+..+
T Consensus 327 --Rf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~ 396 (852)
T TIGR03346 327 --RFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARI 396 (852)
T ss_pred --cCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHH
Confidence 996 68999999999999999887665543332 34455555544 34555556777776544
No 66
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.59 E-value=7.3e-15 Score=153.04 Aligned_cols=170 Identities=22% Similarity=0.252 Sum_probs=125.7
Q ss_pred hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhh--hhhcCCchHHHHHHHHHHHhhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELI--QKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~--~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
..+|+||||||||+ ++|..+ +.+++.++.+.++ .+|.|+.+..++.+|+.++...++||||||+|
T Consensus 202 n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih 281 (821)
T CHL00095 202 NPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVH 281 (821)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHH
Confidence 55799999999999 777765 4789999999887 47899999999999999988889999999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccCC
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIRP 221 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~rp 221 (317)
.+.+..+.. +.......|...|.. +.+.+|++||..+ ..|+++.+
T Consensus 282 ~l~~~g~~~---g~~~~a~lLkp~l~r--------------------------g~l~~IgaTt~~ey~~~ie~D~aL~r- 331 (821)
T CHL00095 282 TLIGAGAAE---GAIDAANILKPALAR--------------------------GELQCIGATTLDEYRKHIEKDPALER- 331 (821)
T ss_pred HHhcCCCCC---CcccHHHHhHHHHhC--------------------------CCcEEEEeCCHHHHHHHHhcCHHHHh-
Confidence 998765322 222344555444432 7899999999864 48999999
Q ss_pred CcceeEEEeCCCCHHHHHHHHHHHhcC----CCCC-cCCCHHHHHHhCCCCC-----HHHHHHHHHHHHHHH
Q psy7780 222 GRIDRKIEFPLPDEKTKRRIFNIHTSR----MTLA-EDVNLQELIMAKDDLS-----GADIKAICTEAGLMA 283 (317)
Q Consensus 222 gRf~~~I~~~~P~~~~r~~Il~~~l~~----~~~~-~~~~~~~ia~~t~g~s-----~~dl~~l~~~A~~~a 283 (317)
||. .|.++.|+.++...|++..... ..+. ++..+..++..+.+|. |.-.-.++.+|+...
T Consensus 332 -Rf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~ 401 (821)
T CHL00095 332 -RFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRV 401 (821)
T ss_pred -cce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHH
Confidence 997 6899999999999998765332 1221 2333556666665543 444556777766543
No 67
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.58 E-value=3.4e-14 Score=136.36 Aligned_cols=191 Identities=21% Similarity=0.246 Sum_probs=128.3
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEechhh----------hhhhcCC-------c-hHHHHHHHHHHHh-
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVVGSEL----------IQKYLGD-------G-PKLVRELFRVAEE- 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s~l----------~~~~~g~-------~-~~~l~~~f~~a~~- 134 (317)
..+++||||||||+ .+++++ +..+++++|... .....+. + ...+..+++....
T Consensus 57 ~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 136 (394)
T PRK00411 57 NVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDER 136 (394)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 46799999999999 666655 578999998532 2222221 1 2233333333333
Q ss_pred hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC--
Q psy7780 135 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-- 212 (317)
Q Consensus 135 ~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-- 212 (317)
..+.||+|||+|.+.... + ...+..++..++.... .++.+|+++|..+
T Consensus 137 ~~~~viviDE~d~l~~~~-----~-----~~~l~~l~~~~~~~~~--------------------~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 137 DRVLIVALDDINYLFEKE-----G-----NDVLYSLLRAHEEYPG--------------------ARIGVIGISSDLTFL 186 (394)
T ss_pred CCEEEEEECCHhHhhccC-----C-----chHHHHHHHhhhccCC--------------------CeEEEEEEECCcchh
Confidence 346899999999997221 0 1245555555443321 3678899988764
Q ss_pred -CCCccccCCCcce-eEEEeCCCCHHHHHHHHHHHhcCCC---CCcCCCHHHHHHhCCCC--CHHHHHHHHHHHHHHHHH
Q psy7780 213 -TLDPALIRPGRID-RKIEFPLPDEKTKRRIFNIHTSRMT---LAEDVNLQELIMAKDDL--SGADIKAICTEAGLMALR 285 (317)
Q Consensus 213 -~Ld~al~rpgRf~-~~I~~~~P~~~~r~~Il~~~l~~~~---~~~~~~~~~ia~~t~g~--s~~dl~~l~~~A~~~a~~ 285 (317)
.+++.+.+ ||. ..|.|++++.++..+|++..+...- .-++..++.+++.+.+. ..+.+..+|..|+..|..
T Consensus 187 ~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 187 YILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 47777777 663 5789999999999999998875321 11233355566665332 345566888999999998
Q ss_pred hcCCCcCHHHHHHHHHHHH
Q psy7780 286 ERRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 286 ~~~~~it~~d~~~al~~v~ 304 (317)
++...|+.+|+.+|+.++.
T Consensus 265 ~~~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKSE 283 (394)
T ss_pred cCCCCcCHHHHHHHHHHHH
Confidence 8889999999999999873
No 68
>KOG2028|consensus
Probab=99.57 E-value=9.9e-15 Score=134.20 Aligned_cols=185 Identities=23% Similarity=0.305 Sum_probs=131.7
Q ss_pred CCceEeechh---------------------hHHHhhhcCCCchh---hhhhcCCce---EEEEechhhhhhhcCCchHH
Q psy7780 72 TSATFLRVVG---------------------SELIQKYLGDGPKL---AVANQTSAT---FLRVVGSELIQKYLGDGPKL 124 (317)
Q Consensus 72 ~~~~~~~i~g---------------------~~Ll~G~pGtGKT~---aiA~~~~~~---~~~v~~s~l~~~~~g~~~~~ 124 (317)
++.+.+|..| ..+|+||||||||+ .+|.....+ |+.+++.. ..-..
T Consensus 133 RPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~-------a~t~d 205 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN-------AKTND 205 (554)
T ss_pred CcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-------cchHH
Confidence 6678888887 66899999999999 777766655 88888754 44678
Q ss_pred HHHHHHHHHhh-----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCC
Q psy7780 125 VRELFRVAEEH-----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLP 199 (317)
Q Consensus 125 l~~~f~~a~~~-----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 199 (317)
+|.+|+.++.. ...|||||||+.+...++ .++.-..+.
T Consensus 206 vR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ-----------D~fLP~VE~-------------------------- 248 (554)
T KOG2028|consen 206 VRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ-----------DTFLPHVEN-------------------------- 248 (554)
T ss_pred HHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh-----------hcccceecc--------------------------
Confidence 99999999753 358999999999865542 222222211
Q ss_pred CCeEEEEEc--CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhc---CC-----CCC------cCCCHHHHHHh
Q psy7780 200 GDVKVIMAT--NRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTS---RM-----TLA------EDVNLQELIMA 263 (317)
Q Consensus 200 ~~v~vI~tT--N~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~---~~-----~~~------~~~~~~~ia~~ 263 (317)
+.|.+|++| |....|..||++ || +++.+.....++-..||.+-.. +- ++. .+.-++.++..
T Consensus 249 G~I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~l 325 (554)
T KOG2028|consen 249 GDITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYL 325 (554)
T ss_pred CceEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHh
Confidence 789999887 667789999999 99 4777888888998888877432 10 111 12235667888
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHhc---CCCcCHHHHHHHHHHH
Q psy7780 264 KDDLSGADIKAICTEAGLMALRER---RMKVTNEDFKKSKESV 303 (317)
Q Consensus 264 t~g~s~~dl~~l~~~A~~~a~~~~---~~~it~~d~~~al~~v 303 (317)
++|-..+.|..|--.+.+.+.|.+ +..++.+|+.+.+.+-
T Consensus 326 sdGDaR~aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s 368 (554)
T KOG2028|consen 326 SDGDARAALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred cCchHHHHHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhc
Confidence 888666666555444456666655 5689999999888753
No 69
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=1.4e-14 Score=140.25 Aligned_cols=169 Identities=16% Similarity=0.173 Sum_probs=117.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce------------------------EEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT------------------------FLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~------------------------~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||||||||+ ++|+.+++. |+.+++.. ..+...+|++.+.+..
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~ 115 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKF 115 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHh
Confidence 37999999999999 888888763 44444321 1223456666665542
Q ss_pred ----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 ----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
....|++|||+|.+.. ..++.||..++... .++++|++|+.
T Consensus 116 ~p~~g~~KV~IIDEah~Ls~--------------~A~NALLKtLEEPp---------------------~~viFILaTte 160 (484)
T PRK14956 116 APMGGKYKVYIIDEVHMLTD--------------QSFNALLKTLEEPP---------------------AHIVFILATTE 160 (484)
T ss_pred hhhcCCCEEEEEechhhcCH--------------HHHHHHHHHhhcCC---------------------CceEEEeecCC
Confidence 2346999999999842 23344555554321 67889999999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
++.|++++++ ||. .+.|..++.++..+.++..+.+.++. ++..+..|++.+.| +.++..+++..+...+ ..
T Consensus 161 ~~kI~~TI~S--RCq-~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~RdAL~lLeq~i~~~----~~ 232 (484)
T PRK14956 161 FHKIPETILS--RCQ-DFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SVRDMLSFMEQAIVFT----DS 232 (484)
T ss_pred hhhccHHHHh--hhh-eeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hHHHHHHHHHHHHHhC----CC
Confidence 9999999999 995 78999999988888888887665543 34457778888887 7888888887655332 23
Q ss_pred CcCHHHHHHH
Q psy7780 290 KVTNEDFKKS 299 (317)
Q Consensus 290 ~it~~d~~~a 299 (317)
.|+.+++.+.
T Consensus 233 ~it~~~V~~~ 242 (484)
T PRK14956 233 KLTGVKIRKM 242 (484)
T ss_pred CcCHHHHHHH
Confidence 4677666543
No 70
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=2.6e-14 Score=139.71 Aligned_cols=171 Identities=15% Similarity=0.190 Sum_probs=116.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
..||+||||||||+ ++|+.+++ .++.++++. ..+-..+|.+.+.+..
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~ 111 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGY 111 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhh
Confidence 36899999999999 88888765 455665532 1223456776666543
Q ss_pred h----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 H----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
. ...||+|||+|.+.. ..+..|+..++... +.+++|++|+.
T Consensus 112 ~p~~~~~kVvIIDE~h~Lt~--------------~a~~~LLk~LE~p~---------------------~~vv~Ilattn 156 (472)
T PRK14962 112 RPMEGKYKVYIIDEVHMLTK--------------EAFNALLKTLEEPP---------------------SHVVFVLATTN 156 (472)
T ss_pred ChhcCCeEEEEEEChHHhHH--------------HHHHHHHHHHHhCC---------------------CcEEEEEEeCC
Confidence 2 235999999998842 12334455544322 56778888888
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
+..+++++++ ||. .+.|.+|+.++...+++......++. ++..+..|++.+.| +.+++.+.+..+...+ ..
T Consensus 157 ~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-dlR~aln~Le~l~~~~----~~ 228 (472)
T PRK14962 157 LEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-GLRDALTMLEQVWKFS----EG 228 (472)
T ss_pred hHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHHHHHHHHHHHHHhc----CC
Confidence 8899999999 995 89999999999999998887654332 23346777877655 5556666665443321 23
Q ss_pred CcCHHHHHHHHH
Q psy7780 290 KVTNEDFKKSKE 301 (317)
Q Consensus 290 ~it~~d~~~al~ 301 (317)
.|+.+++.+++.
T Consensus 229 ~It~e~V~~~l~ 240 (472)
T PRK14962 229 KITLETVHEALG 240 (472)
T ss_pred CCCHHHHHHHHc
Confidence 488888887764
No 71
>PRK04195 replication factor C large subunit; Provisional
Probab=99.56 E-value=2.3e-14 Score=141.24 Aligned_cols=170 Identities=18% Similarity=0.223 Sum_probs=116.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHh------hCCceEeecccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE------HAPSIVFIDEIDAVGTKR 152 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~------~~P~Ii~iDEiD~l~~~r 152 (317)
+.||+||||||||+ ++|++++.+++.+++++... ...++.+...+.. ..+.+|+|||+|.+....
T Consensus 41 ~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~ 114 (482)
T PRK04195 41 ALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE 114 (482)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc------HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc
Confidence 67899999999999 99999999999999987432 2234444433332 246799999999986521
Q ss_pred cCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCc-cccCCCcceeEEEeC
Q psy7780 153 YDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDP-ALIRPGRIDRKIEFP 231 (317)
Q Consensus 153 ~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~-al~rpgRf~~~I~~~ 231 (317)
+...... ++..++. .+..+|+++|.+..+++ .+++ |+ ..|.|+
T Consensus 115 -------d~~~~~a---L~~~l~~-----------------------~~~~iIli~n~~~~~~~k~Lrs--r~-~~I~f~ 158 (482)
T PRK04195 115 -------DRGGARA---ILELIKK-----------------------AKQPIILTANDPYDPSLRELRN--AC-LMIEFK 158 (482)
T ss_pred -------chhHHHH---HHHHHHc-----------------------CCCCEEEeccCccccchhhHhc--cc-eEEEec
Confidence 1111223 3333332 23347788999998887 6776 66 489999
Q ss_pred CCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHH
Q psy7780 232 LPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS 299 (317)
Q Consensus 232 ~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~a 299 (317)
.|+.++...+++..+.+.++. ++..+..|+..+. +|++.+++.... +..+...++.+++...
T Consensus 159 ~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~----GDlR~ain~Lq~--~a~~~~~it~~~v~~~ 221 (482)
T PRK04195 159 RLSTRSIVPVLKRICRKEGIECDDEALKEIAERSG----GDLRSAINDLQA--IAEGYGKLTLEDVKTL 221 (482)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHH--HhcCCCCCcHHHHHHh
Confidence 999999999999888665443 3344677777654 477777775544 3344556777777544
No 72
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.53 E-value=3.1e-14 Score=146.72 Aligned_cols=200 Identities=17% Similarity=0.237 Sum_probs=129.7
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhh---------hhcCCchHHHHHHHHHHHhhCCceEeeccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ---------KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~---------~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
..+|+||||||||+ .+|..++.+|++++.+...+ .|.|..+..+...+..+....| ||||||+|.+.
T Consensus 351 ~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~ 429 (784)
T PRK10787 351 ILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMS 429 (784)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcc
Confidence 46899999999999 99999999999998765432 4777777777777777665555 89999999997
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEE
Q psy7780 150 TKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIE 229 (317)
Q Consensus 150 ~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~ 229 (317)
....+ .... .|++.+|.-.+..-.+ +|.+. .+.+ ++|++|+|||.. .|+++|++ ||+ .|.
T Consensus 430 ~~~~g-------~~~~---aLlevld~~~~~~~~d----~~~~~-~~dl-s~v~~i~TaN~~-~i~~aLl~--R~~-ii~ 489 (784)
T PRK10787 430 SDMRG-------DPAS---ALLEVLDPEQNVAFSD----HYLEV-DYDL-SDVMFVATSNSM-NIPAPLLD--RME-VIR 489 (784)
T ss_pred cccCC-------CHHH---HHHHHhccccEEEEec----ccccc-cccC-CceEEEEcCCCC-CCCHHHhc--cee-eee
Confidence 54311 1123 4444455322211111 11111 1222 789999999987 59999999 996 799
Q ss_pred eCCCCHHHHHHHHHHHhcC-----CCCC------cCCCHHHHHHh-CCCCCHHHHHHHHHHHHHHHHHh----c---CCC
Q psy7780 230 FPLPDEKTKRRIFNIHTSR-----MTLA------EDVNLQELIMA-KDDLSGADIKAICTEAGLMALRE----R---RMK 290 (317)
Q Consensus 230 ~~~P~~~~r~~Il~~~l~~-----~~~~------~~~~~~~ia~~-t~g~s~~dl~~l~~~A~~~a~~~----~---~~~ 290 (317)
|+.++.++..+|.+.++.. ..+. .+..+..+++. +..+-.|.|+++++..+..++.+ + ...
T Consensus 490 ~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~ 569 (784)
T PRK10787 490 LSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSLKHIE 569 (784)
T ss_pred cCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCCCceee
Confidence 9999999999999998741 1111 11123444432 34444566666655544433322 2 236
Q ss_pred cCHHHHHHHHHH
Q psy7780 291 VTNEDFKKSKES 302 (317)
Q Consensus 291 it~~d~~~al~~ 302 (317)
|+.+++.+-+-.
T Consensus 570 v~~~~~~~~lg~ 581 (784)
T PRK10787 570 INGDNLHDYLGV 581 (784)
T ss_pred ecHHHHHHHhCC
Confidence 888887766653
No 73
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=8.7e-14 Score=132.40 Aligned_cols=171 Identities=13% Similarity=0.186 Sum_probs=116.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce------------------------EEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT------------------------FLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~------------------------~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||||+|||+ ++|+++.+. ++.+++++ ......++++.+.+..
T Consensus 40 ~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~ 113 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYY 113 (363)
T ss_pred EEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhc
Confidence 46899999999999 888887642 23332221 1223456777665542
Q ss_pred h----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 H----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
. ...|++|||+|.+.. .....+|..++... ..+.+|++|+.
T Consensus 114 ~p~~~~~kviIIDEa~~l~~--------------~a~naLLk~lEe~~---------------------~~~~fIl~t~~ 158 (363)
T PRK14961 114 SPSKSRFKVYLIDEVHMLSR--------------HSFNALLKTLEEPP---------------------QHIKFILATTD 158 (363)
T ss_pred CcccCCceEEEEEChhhcCH--------------HHHHHHHHHHhcCC---------------------CCeEEEEEcCC
Confidence 2 235999999998732 12233444444322 55778888888
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
++.+.+++++ |+ ..++|++|+.++..++++..+++.+.. ++..+..++..+.| +++++.+++..+... +..
T Consensus 159 ~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~al~~l~~~~~~----~~~ 230 (363)
T PRK14961 159 VEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRDALNLLEHAINL----GKG 230 (363)
T ss_pred hHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCC
Confidence 9999999998 88 589999999999999999887665432 33346667777776 788888888766533 356
Q ss_pred CcCHHHHHHHHH
Q psy7780 290 KVTNEDFKKSKE 301 (317)
Q Consensus 290 ~it~~d~~~al~ 301 (317)
.++.+++.+++.
T Consensus 231 ~It~~~v~~~l~ 242 (363)
T PRK14961 231 NINIKNVTDMLG 242 (363)
T ss_pred CCCHHHHHHHHC
Confidence 688888877553
No 74
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=3.5e-14 Score=142.68 Aligned_cols=155 Identities=17% Similarity=0.157 Sum_probs=110.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+|++|||||+ ++|+.+++ .+++++.++ ..+...++++.+.+..
T Consensus 40 AyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~ 113 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVY 113 (830)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHh
Confidence 46899999999999 78887765 244444332 1233457777776542
Q ss_pred h----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 H----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
. ...|++|||+|.+... ..+.|...|++ .. .++.+|++||.
T Consensus 114 ~P~~gr~KVIIIDEah~LT~~-----------A~NALLKtLEE---PP---------------------~~v~FILaTtd 158 (830)
T PRK07003 114 APVDARFKVYMIDEVHMLTNH-----------AFNAMLKTLEE---PP---------------------PHVKFILATTD 158 (830)
T ss_pred ccccCCceEEEEeChhhCCHH-----------HHHHHHHHHHh---cC---------------------CCeEEEEEECC
Confidence 2 2469999999998421 13334444443 21 57889999999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGL 281 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~ 281 (317)
++.|.+.|++ || .++.|..++.++..+.|+..+.+.++. ++..+..|++.+.| +.++..+++..+..
T Consensus 159 ~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-smRdALsLLdQAia 226 (830)
T PRK07003 159 PQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-SMRDALSLTDQAIA 226 (830)
T ss_pred hhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 9999999999 99 589999999999999998887665443 33446777888887 67887788776653
No 75
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=7.4e-14 Score=137.22 Aligned_cols=173 Identities=16% Similarity=0.224 Sum_probs=122.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce----------------------------EEEEechhhhhhhcCCchHHHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT----------------------------FLRVVGSELIQKYLGDGPKLVRELFR 130 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~----------------------------~~~v~~s~l~~~~~g~~~~~l~~~f~ 130 (317)
.+||+||||||||+ ++|+.+++. ++.+++. ...+...++++++
T Consensus 45 a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaa------s~~~vd~Ir~iie 118 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAA------SKTSVDDIRRIIE 118 (507)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeecc------CCCCHHHHHHHHH
Confidence 58999999999999 888887652 2222221 1123567888888
Q ss_pred HHHhh----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEE
Q psy7780 131 VAEEH----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIM 206 (317)
Q Consensus 131 ~a~~~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~ 206 (317)
.+... ...|++|||+|.+.. ..++.|+..++... ..+++|+
T Consensus 119 ~a~~~P~~~~~KVvIIDEa~~Ls~--------------~a~naLLk~LEepp---------------------~~~vfI~ 163 (507)
T PRK06645 119 SAEYKPLQGKHKIFIIDEVHMLSK--------------GAFNALLKTLEEPP---------------------PHIIFIF 163 (507)
T ss_pred HHHhccccCCcEEEEEEChhhcCH--------------HHHHHHHHHHhhcC---------------------CCEEEEE
Confidence 77533 235999999998832 22334555444321 5678888
Q ss_pred EcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q psy7780 207 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 207 tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~ 285 (317)
+|+.++.+++++++ |+ ..++|..++.++...+++..+++.+.. ++..+..++..+.| +.+++.+++..+...+..
T Consensus 164 aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-slR~al~~Ldkai~~~~~ 239 (507)
T PRK06645 164 ATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SARDAVSILDQAASMSAK 239 (507)
T ss_pred EeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhhcc
Confidence 88899999999999 98 479999999999999999998765543 22346778888777 899999999887665432
Q ss_pred hcCCCcCHHHHHHHH
Q psy7780 286 ERRMKVTNEDFKKSK 300 (317)
Q Consensus 286 ~~~~~it~~d~~~al 300 (317)
. ...||.+++.+.+
T Consensus 240 ~-~~~It~~~V~~ll 253 (507)
T PRK06645 240 S-DNIISPQVINQML 253 (507)
T ss_pred C-CCCcCHHHHHHHH
Confidence 1 2357777776554
No 76
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.53 E-value=3.6e-14 Score=144.82 Aligned_cols=175 Identities=19% Similarity=0.193 Sum_probs=117.8
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHh-----hCCceEeeccccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE-----HAPSIVFIDEIDAVGTKRY 153 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~-----~~P~Ii~iDEiD~l~~~r~ 153 (317)
+.+|+||||||||+ ++|+.++.+|+.++++.- +.+.+++.+..+.. ....+|||||+|.+....
T Consensus 54 slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~q- 125 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQ- 125 (725)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHH-
Confidence 56899999999999 999999999999987631 12344555554422 235699999999884321
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEc--CCCCCCCccccCCCcceeEEEeC
Q psy7780 154 DSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMAT--NRIETLDPALIRPGRIDRKIEFP 231 (317)
Q Consensus 154 ~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tT--N~~~~Ld~al~rpgRf~~~I~~~ 231 (317)
+..|...++. +.+++|++| |....+++++++ |+. .+.|+
T Consensus 126 ----------QdaLL~~lE~--------------------------g~IiLI~aTTenp~~~l~~aL~S--R~~-v~~l~ 166 (725)
T PRK13341 126 ----------QDALLPWVEN--------------------------GTITLIGATTENPYFEVNKALVS--RSR-LFRLK 166 (725)
T ss_pred ----------HHHHHHHhcC--------------------------ceEEEEEecCCChHhhhhhHhhc--ccc-ceecC
Confidence 3333333322 567777766 334578999999 874 79999
Q ss_pred CCCHHHHHHHHHHHhcC-------CCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc--CCCcCHHHHHHHHH
Q psy7780 232 LPDEKTKRRIFNIHTSR-------MTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRER--RMKVTNEDFKKSKE 301 (317)
Q Consensus 232 ~P~~~~r~~Il~~~l~~-------~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~--~~~it~~d~~~al~ 301 (317)
+++.+++..+++..+.. ..+. ++..+..+++.+.| +.+.+.++++.|...+.... ...|+.+++.+++.
T Consensus 167 pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~ 245 (725)
T PRK13341 167 SLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAVESTPPDEDGLIDITLAIAEESIQ 245 (725)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHH
Confidence 99999999999988762 1121 22335667777654 66777777777664332222 22488888888877
Q ss_pred HHH
Q psy7780 302 SVL 304 (317)
Q Consensus 302 ~v~ 304 (317)
+..
T Consensus 246 ~~~ 248 (725)
T PRK13341 246 QRA 248 (725)
T ss_pred Hhh
Confidence 643
No 77
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.52 E-value=8.4e-14 Score=126.74 Aligned_cols=198 Identities=20% Similarity=0.254 Sum_probs=121.6
Q ss_pred chhhHHHhhhcCCCchh---hhhhcCCceEEEEech------hhhhhhcCCchHHHHHH--------------------H
Q psy7780 79 VVGSELIQKYLGDGPKL---AVANQTSATFLRVVGS------ELIQKYLGDGPKLVREL--------------------F 129 (317)
Q Consensus 79 i~g~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s------~l~~~~~g~~~~~l~~~--------------------f 129 (317)
.+.|+||+|+||||||+ ++|+.+|.+|+.++|. +++..+.|.....+..- +
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 99 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL 99 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence 34588999999999999 9999999999999774 45444443322211111 1
Q ss_pred HHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcC
Q psy7780 130 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATN 209 (317)
Q Consensus 130 ~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN 209 (317)
-.|.. .+.+++|||++.+- .+.+..|..+|++ +.-...+.. ..........++.||+|+|
T Consensus 100 ~~A~~-~g~~lllDEi~r~~-----------~~~q~~Ll~~Le~--~~~~i~~~~------~~~~~i~~~~~frvIaTsN 159 (262)
T TIGR02640 100 TLAVR-EGFTLVYDEFTRSK-----------PETNNVLLSVFEE--GVLELPGKR------GTSRYVDVHPEFRVIFTSN 159 (262)
T ss_pred HHHHH-cCCEEEEcchhhCC-----------HHHHHHHHHHhcC--CeEEccCCC------CCCceEecCCCCEEEEeeC
Confidence 11222 24799999999863 2345566666543 110000000 0001112235788999999
Q ss_pred CCC-----CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHH---HHHh------CCCCCHHHHHHH
Q psy7780 210 RIE-----TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQE---LIMA------KDDLSGADIKAI 275 (317)
Q Consensus 210 ~~~-----~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~---ia~~------t~g~s~~dl~~l 275 (317)
... .+++++++ || ..++++.|+.++-.+|++.++. .... ..+. ++.. ....+.+..-.+
T Consensus 160 ~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~---~~~~-~~~~iv~~~~~~R~~~~~~~~~~r~~i~~ 232 (262)
T TIGR02640 160 PVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTD---VAED-SAATIVRLVREFRASGDEITSGLRASLMI 232 (262)
T ss_pred CccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhC---CCHH-HHHHHHHHHHHHHhhCCccCCcHHHHHHH
Confidence 863 57999999 99 5899999999999999998762 2211 1111 2111 112344444444
Q ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHHHhh
Q psy7780 276 CTEAGLMALRERRMKVTNEDFKKSKESVLYR 306 (317)
Q Consensus 276 ~~~A~~~a~~~~~~~it~~d~~~al~~v~~~ 306 (317)
++. .+....+..++.+||.+.+..|+.+
T Consensus 233 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (262)
T TIGR02640 233 AEV---ATQQDIPVDVDDEDFVDLCIDILAS 260 (262)
T ss_pred HHH---HHHcCCCCCCCcHHHHHHHHHHhcc
Confidence 443 3333557889999999999998865
No 78
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2e-14 Score=142.71 Aligned_cols=166 Identities=17% Similarity=0.189 Sum_probs=117.7
Q ss_pred CCCceEeechh-------------------hHHHhhhcCCCchh---hhhhcCCc-------------------------
Q psy7780 71 QTSATFLRVVG-------------------SELIQKYLGDGPKL---AVANQTSA------------------------- 103 (317)
Q Consensus 71 ~~~~~~~~i~g-------------------~~Ll~G~pGtGKT~---aiA~~~~~------------------------- 103 (317)
.++.+|+|+.| .+||+|++|||||+ ++|+.+++
T Consensus 10 YRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~a 89 (700)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDA 89 (700)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHc
Confidence 36667777777 46999999999999 78887766
Q ss_pred ----eEEEEechhhhhhhcCCchHHHHHHHHHHHh----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhc
Q psy7780 104 ----TFLRVVGSELIQKYLGDGPKLVRELFRVAEE----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLD 175 (317)
Q Consensus 104 ----~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld 175 (317)
.+++++.++ ..+-..+|++.+.+.. ....|++|||+|.+.. ...+.||..|+
T Consensus 90 G~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~--------------~AaNALLKTLE 149 (700)
T PRK12323 90 GRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN--------------HAFNAMLKTLE 149 (700)
T ss_pred CCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH--------------HHHHHHHHhhc
Confidence 233443321 1234556777666543 2246999999999842 23345555555
Q ss_pred CCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcC-
Q psy7780 176 GFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAED- 254 (317)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~- 254 (317)
.-. .++++|++||.++.|.+.|++ || ..+.|..++.++..+.++..+.+.++..+
T Consensus 150 EPP---------------------~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~ 205 (700)
T PRK12323 150 EPP---------------------EHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEV 205 (700)
T ss_pred cCC---------------------CCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcCCCCCH
Confidence 432 678899999999999999999 99 58999999999999998887765444322
Q ss_pred CCHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy7780 255 VNLQELIMAKDDLSGADIKAICTEAGL 281 (317)
Q Consensus 255 ~~~~~ia~~t~g~s~~dl~~l~~~A~~ 281 (317)
..+..|++.+.| ++++..+++..+..
T Consensus 206 eAL~~IA~~A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 206 NALRLLAQAAQG-SMRDALSLTDQAIA 231 (700)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 235667777777 78888888876553
No 79
>PRK06893 DNA replication initiation factor; Validated
Probab=99.52 E-value=6.4e-14 Score=125.04 Aligned_cols=175 Identities=17% Similarity=0.129 Sum_probs=109.8
Q ss_pred HHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCC
Q psy7780 83 ELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSN 156 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~ 156 (317)
.+|+||||||||+ |+|+++ +....+++...... ...++++..+ +..+|+|||++.+.+.+
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~~~--~~dlLilDDi~~~~~~~---- 107 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY--------FSPAVLENLE--QQDLVCLDDLQAVIGNE---- 107 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhh--------hhHHHHhhcc--cCCEEEEeChhhhcCCh----
Confidence 4789999999998 888775 23444444432111 1112333332 34799999999886432
Q ss_pred CCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCC---ccccCCCcc--eeEEEeC
Q psy7780 157 SGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD---PALIRPGRI--DRKIEFP 231 (317)
Q Consensus 157 ~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld---~al~rpgRf--~~~I~~~ 231 (317)
+.+..+..+++.+..- . ..+++++++..|..++ +.|.+ |+ ...+.++
T Consensus 108 -----~~~~~l~~l~n~~~~~--~-------------------~~illits~~~p~~l~~~~~~L~s--Rl~~g~~~~l~ 159 (229)
T PRK06893 108 -----EWELAIFDLFNRIKEQ--G-------------------KTLLLISADCSPHALSIKLPDLAS--RLTWGEIYQLN 159 (229)
T ss_pred -----HHHHHHHHHHHHHHHc--C-------------------CcEEEEeCCCChHHccccchhHHH--HHhcCCeeeCC
Confidence 1223444555443211 0 2344555556677665 88998 65 4788999
Q ss_pred CCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q psy7780 232 LPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKE 301 (317)
Q Consensus 232 ~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~ 301 (317)
.|+.++|.+|++......++. ++..+..++++..| +.+.+..+++.-...+..++ ..||...+++++.
T Consensus 160 ~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~~-~~it~~~v~~~L~ 228 (229)
T PRK06893 160 DLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLDKASLQAQ-RKLTIPFVKEILG 228 (229)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHhc
Confidence 999999999999876543333 33335667777665 67777777776543444434 4699999887763
No 80
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.51 E-value=8.1e-14 Score=135.60 Aligned_cols=188 Identities=15% Similarity=0.193 Sum_probs=123.6
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEechhhhhhhcCCc-hHHHHHHHHHHHhhCCceEeecccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVVGSELIQKYLGDG-PKLVRELFRVAEEHAPSIVFIDEIDAVGTKR 152 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s~l~~~~~g~~-~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r 152 (317)
|.+|||+||||||+ ++|+++ +..++++++.+++..+.... ...+.. |.......+.+|+|||++.+.++.
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~ 210 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKT 210 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcH
Confidence 56899999999999 888875 56889999988776543211 112222 332223357899999999886542
Q ss_pred cCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC---CCccccCCCcce--eE
Q psy7780 153 YDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET---LDPALIRPGRID--RK 227 (317)
Q Consensus 153 ~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~---Ld~al~rpgRf~--~~ 227 (317)
. .+..+..+++.+. .. +..+||++.+.|.. +.+.+.+ ||. ..
T Consensus 211 -----~----~q~elf~~~n~l~---~~-------------------~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~ 257 (440)
T PRK14088 211 -----G----VQTELFHTFNELH---DS-------------------GKQIVICSDREPQKLSEFQDRLVS--RFQMGLV 257 (440)
T ss_pred -----H----HHHHHHHHHHHHH---Hc-------------------CCeEEEECCCCHHHHHHHHHHHhh--HHhcCce
Confidence 1 1222222332221 11 34445555556665 5577888 884 57
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q psy7780 228 IEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 228 I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~ 305 (317)
+.+.+|+.+.|..|++......++. ++..++.|++...| +.++|..++..-...+...+ ..+|.+...++++.++.
T Consensus 258 v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~~-~~it~~~a~~~L~~~~~ 334 (440)
T PRK14088 258 AKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETTG-EEVDLKEAILLLKDFIK 334 (440)
T ss_pred EeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhc
Confidence 8899999999999999987644333 23336677777665 78888888887655555444 45888888888887653
No 81
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.51 E-value=1.4e-13 Score=139.36 Aligned_cols=184 Identities=20% Similarity=0.293 Sum_probs=120.7
Q ss_pred HHhhhcCCCchh---hhhhcC----------CceEEEEechhhhhh----------hcCC-------chHHHHHHHHHHH
Q psy7780 84 LIQKYLGDGPKL---AVANQT----------SATFLRVVGSELIQK----------YLGD-------GPKLVRELFRVAE 133 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~~~----------~~g~-------~~~~l~~~f~~a~ 133 (317)
+++|+||||||+ .+.+++ .+.+++|+|..+... ..+. +...+..+|....
T Consensus 785 YIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~ 864 (1164)
T PTZ00112 785 YISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNK 864 (1164)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhh
Confidence 489999999998 444333 267899999543221 1111 2345667777653
Q ss_pred h--hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC-
Q psy7780 134 E--HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR- 210 (317)
Q Consensus 134 ~--~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~- 210 (317)
. ...+||+|||||.|..+. +.+|..|++.... .. ..+.||+++|.
T Consensus 865 k~~r~v~IIILDEID~L~kK~-----------QDVLYnLFR~~~~--s~-------------------SKLiLIGISNdl 912 (1164)
T PTZ00112 865 KDNRNVSILIIDEIDYLITKT-----------QKVLFTLFDWPTK--IN-------------------SKLVLIAISNTM 912 (1164)
T ss_pred cccccceEEEeehHhhhCccH-----------HHHHHHHHHHhhc--cC-------------------CeEEEEEecCch
Confidence 2 335799999999997532 3456666654321 11 56889999987
Q ss_pred --CCCCCccccCCCccee-EEEeCCCCHHHHHHHHHHHhcCCC-CCcCCCHHHHHHhCCCCCHHHHH---HHHHHHHHHH
Q psy7780 211 --IETLDPALIRPGRIDR-KIEFPLPDEKTKRRIFNIHTSRMT-LAEDVNLQELIMAKDDLSGADIK---AICTEAGLMA 283 (317)
Q Consensus 211 --~~~Ld~al~rpgRf~~-~I~~~~P~~~~r~~Il~~~l~~~~-~~~~~~~~~ia~~t~g~s~~dl~---~l~~~A~~~a 283 (317)
++.|+|.+++ ||.. +|.|++++.+++.+||+..+.... .-.+..++.+|+..... .+|++ .+|+.|+..
T Consensus 913 DLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~-SGDARKALDILRrAgEi- 988 (1164)
T PTZ00112 913 DLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANV-SGDIRKALQICRKAFEN- 988 (1164)
T ss_pred hcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhc-CCHHHHHHHHHHHHHhh-
Confidence 5667888888 7753 589999999999999999887532 11222345555543322 23544 556666654
Q ss_pred HHhcCCCcCHHHHHHHHHHHHh
Q psy7780 284 LRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 284 ~~~~~~~it~~d~~~al~~v~~ 305 (317)
++...|+.+|+.+|++++..
T Consensus 989 --kegskVT~eHVrkAleeiE~ 1008 (1164)
T PTZ00112 989 --KRGQKIVPRDITEATNQLFD 1008 (1164)
T ss_pred --cCCCccCHHHHHHHHHHHHh
Confidence 34458999999999987643
No 82
>PLN03025 replication factor C subunit; Provisional
Probab=99.51 E-value=6e-14 Score=131.25 Aligned_cols=167 Identities=14% Similarity=0.154 Sum_probs=106.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCC-----ceEEEEechhhhhhhcCCchHHHHHHHHHH-Hh------hCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS-----ATFLRVVGSELIQKYLGDGPKLVRELFRVA-EE------HAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~-----~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a-~~------~~P~Ii~iDEiD 146 (317)
+.||+||||||||+ ++|+++. ..++.+++++..+ ...++...... .. ..+.|++|||+|
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~------~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d 109 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRG------IDVVRNKIKMFAQKKVTLPPGRHKIVILDEAD 109 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccccc------HHHHHHHHHHHHhccccCCCCCeEEEEEechh
Confidence 57899999999999 8888862 3467777765322 12344333221 11 235699999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCccee
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDR 226 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~ 226 (317)
.+... .+..|...++. .. ....+|.+||.++.+.++|++ |+.
T Consensus 110 ~lt~~-----------aq~aL~~~lE~---~~---------------------~~t~~il~~n~~~~i~~~L~S--Rc~- 151 (319)
T PLN03025 110 SMTSG-----------AQQALRRTMEI---YS---------------------NTTRFALACNTSSKIIEPIQS--RCA- 151 (319)
T ss_pred hcCHH-----------HHHHHHHHHhc---cc---------------------CCceEEEEeCCccccchhHHH--hhh-
Confidence 98432 23444444432 21 334577888999999999999 884
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHH
Q psy7780 227 KIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKK 298 (317)
Q Consensus 227 ~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~ 298 (317)
.++|++|+.++....++...++.++. ++..+..++..+.| +.+.+.+.++.+. .+...|+.+++.+
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq~~~-----~~~~~i~~~~v~~ 218 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQATH-----SGFGFVNQENVFK 218 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH-----hcCCCCCHHHHHH
Confidence 89999999999999998887654443 33446777777554 4444444444211 1233566666644
No 83
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=8.9e-14 Score=137.26 Aligned_cols=181 Identities=19% Similarity=0.161 Sum_probs=126.2
Q ss_pred CCCceEeechh-------------------hHHHhhhcCCCchh---hhhhcCCce------------------------
Q psy7780 71 QTSATFLRVVG-------------------SELIQKYLGDGPKL---AVANQTSAT------------------------ 104 (317)
Q Consensus 71 ~~~~~~~~i~g-------------------~~Ll~G~pGtGKT~---aiA~~~~~~------------------------ 104 (317)
.++.+|+|+.| .+||+||||||||+ ++|+.+++.
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d 89 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPD 89 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCce
Confidence 46677888877 46999999999999 888887653
Q ss_pred EEEEechhhhhhhcCCchHHHHHHHHHHHh----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcc
Q psy7780 105 FLRVVGSELIQKYLGDGPKLVRELFRVAEE----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR 180 (317)
Q Consensus 105 ~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 180 (317)
++++++++ ..+-..+|++.+.+.. ....|++|||+|.+... .++.||..|+...
T Consensus 90 ~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~--------------a~naLLk~LEepp-- 147 (509)
T PRK14958 90 LFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH--------------SFNALLKTLEEPP-- 147 (509)
T ss_pred EEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH--------------HHHHHHHHHhccC--
Confidence 56665442 1234457777665542 12359999999998432 2334444444332
Q ss_pred cccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHH
Q psy7780 181 VQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQE 259 (317)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ 259 (317)
.++.+|++|+.++.+.+.+++ |+ ..++|..++.++....++..+++.++. .+..+..
T Consensus 148 -------------------~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ 205 (509)
T PRK14958 148 -------------------SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDL 205 (509)
T ss_pred -------------------CCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 567888888999999999999 98 478999999988888888877665543 2334667
Q ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q psy7780 260 LIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSK 300 (317)
Q Consensus 260 ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al 300 (317)
+++.+.| +.+++.+++..+... +...|+.+++.+.+
T Consensus 206 ia~~s~G-slR~al~lLdq~ia~----~~~~It~~~V~~~l 241 (509)
T PRK14958 206 LARAANG-SVRDALSLLDQSIAY----GNGKVLIADVKTML 241 (509)
T ss_pred HHHHcCC-cHHHHHHHHHHHHhc----CCCCcCHHHHHHHH
Confidence 7777766 888999998876533 23457777666543
No 84
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=8.4e-14 Score=138.58 Aligned_cols=169 Identities=17% Similarity=0.163 Sum_probs=118.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||||||||+ ++|+.+++ .++.+++++- .+...+|++.+.+..
T Consensus 39 AyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y 112 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPY 112 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhh
Confidence 56999999999999 78888765 3455554321 234467777665532
Q ss_pred ----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 ----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
....|++|||+|.+... ..+.|+..++... +++.+|++|+.
T Consensus 113 ~P~~gk~KV~IIDEVh~LS~~--------------A~NALLKtLEEPP---------------------~~v~FILaTtd 157 (702)
T PRK14960 113 APTQGRFKVYLIDEVHMLSTH--------------SFNALLKTLEEPP---------------------EHVKFLFATTD 157 (702)
T ss_pred hhhcCCcEEEEEechHhcCHH--------------HHHHHHHHHhcCC---------------------CCcEEEEEECC
Confidence 23469999999988422 2233444444321 56778888899
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
+..+++.+++ |+. ++.|.+++.++..+.++..+.+.++. .+..+..|++.+.| +.+++.+++..+... +..
T Consensus 158 ~~kIp~TIlS--RCq-~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLRdALnLLDQaIay----g~g 229 (702)
T PRK14960 158 PQKLPITVIS--RCL-QFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLRDALSLTDQAIAY----GQG 229 (702)
T ss_pred hHhhhHHHHH--hhh-eeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCC
Confidence 9999999998 994 89999999999999998887765544 33346778888776 888888888765532 345
Q ss_pred CcCHHHHHHH
Q psy7780 290 KVTNEDFKKS 299 (317)
Q Consensus 290 ~it~~d~~~a 299 (317)
.|+.+++...
T Consensus 230 ~IT~edV~~l 239 (702)
T PRK14960 230 AVHHQDVKEM 239 (702)
T ss_pred CcCHHHHHHH
Confidence 6777777554
No 85
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=1.6e-13 Score=137.80 Aligned_cols=180 Identities=21% Similarity=0.224 Sum_probs=122.8
Q ss_pred CCceEeechh-------------------hHHHhhhcCCCchh---hhhhcCCce------------------------E
Q psy7780 72 TSATFLRVVG-------------------SELIQKYLGDGPKL---AVANQTSAT------------------------F 105 (317)
Q Consensus 72 ~~~~~~~i~g-------------------~~Ll~G~pGtGKT~---aiA~~~~~~------------------------~ 105 (317)
++.+|++|.| .+||+|+||||||+ ++|+.+++. +
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ 90 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDL 90 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCc
Confidence 6667777777 36899999999999 888888763 3
Q ss_pred EEEechhhhhhhcCCchHHHHHHHHHHHh----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCccc
Q psy7780 106 LRVVGSELIQKYLGDGPKLVRELFRVAEE----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRV 181 (317)
Q Consensus 106 ~~v~~s~l~~~~~g~~~~~l~~~f~~a~~----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 181 (317)
+.+++++ ..+-..+|++.+.+.. ...-|++|||+|.+... ..+.||..|+...
T Consensus 91 ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~--------------a~NALLKtLEEPp--- 147 (647)
T PRK07994 91 IEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRH--------------SFNALLKTLEEPP--- 147 (647)
T ss_pred eeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHH--------------HHHHHHHHHHcCC---
Confidence 3343321 1123456666655532 22459999999988422 2334444444322
Q ss_pred ccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHH
Q psy7780 182 QNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQEL 260 (317)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~i 260 (317)
+++.+|++|+.+..|.+.+++ || ..++|..++.++....++..+...++. .+..+..|
T Consensus 148 ------------------~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~I 206 (647)
T PRK07994 148 ------------------EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLL 206 (647)
T ss_pred ------------------CCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 678888889999999999999 98 689999999999999998887654443 23345667
Q ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q psy7780 261 IMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSK 300 (317)
Q Consensus 261 a~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al 300 (317)
+..+.| +.++..+++..|... +...|+.+++.+.+
T Consensus 207 a~~s~G-s~R~Al~lldqaia~----~~~~it~~~v~~~l 241 (647)
T PRK07994 207 ARAADG-SMRDALSLTDQAIAS----GNGQVTTDDVSAML 241 (647)
T ss_pred HHHcCC-CHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 777777 788888888765432 23346666655443
No 86
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.48 E-value=4e-13 Score=133.49 Aligned_cols=187 Identities=15% Similarity=0.164 Sum_probs=126.0
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeeccccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRY 153 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~ 153 (317)
+.+|||++|+|||. |+|+++ +..++++++.+++..+.........+.|..-. ..+.+|+||||+.+..+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y-~~~DLLlIDDIq~l~gke- 393 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRY-REMDILLVDDIQFLEDKE- 393 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHh-hcCCEEEEehhccccCCH-
Confidence 57899999999998 888875 57899999999887665433222223344322 236899999999986543
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC----CCCCccccCCCcce--eE
Q psy7780 154 DSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI----ETLDPALIRPGRID--RK 227 (317)
Q Consensus 154 ~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~----~~Ld~al~rpgRf~--~~ 227 (317)
.. +..|..+++.+-.- +.- +|.|+|++ ..+++.|++ ||. ..
T Consensus 394 ----~t----qeeLF~l~N~l~e~----------------------gk~-IIITSd~~P~eL~~l~~rL~S--Rf~~GLv 440 (617)
T PRK14086 394 ----ST----QEEFFHTFNTLHNA----------------------NKQ-IVLSSDRPPKQLVTLEDRLRN--RFEWGLI 440 (617)
T ss_pred ----HH----HHHHHHHHHHHHhc----------------------CCC-EEEecCCChHhhhhccHHHHh--hhhcCce
Confidence 11 22333344333211 222 55577663 357889999 984 66
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q psy7780 228 IEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 228 I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~ 305 (317)
+.+..|+.+.|.+||+......++. ++.-++.|+.+..+ +.++|..++.+-...+...+ ..|+.+.+++.++.++.
T Consensus 441 v~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~~-~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 441 TDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASLNR-QPVDLGLTEIVLRDLIP 517 (617)
T ss_pred EEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhhc
Confidence 7999999999999999988765554 33335666666554 67888888877655555444 55888888888877654
No 87
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.48 E-value=1.6e-13 Score=121.63 Aligned_cols=175 Identities=18% Similarity=0.207 Sum_probs=116.4
Q ss_pred hhhHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeeccccccccccc
Q psy7780 80 VGSELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRY 153 (317)
Q Consensus 80 ~g~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~ 153 (317)
.++++++|+||||||+ ++++++ +.++++++++++.... ..+++.... +.+|+|||+|.+....
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~--~~lLvIDdi~~l~~~~- 106 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEGLEQ--ADLVCLDDVEAIAGQP- 106 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhhccc--CCEEEEeChhhhcCCh-
Confidence 3478999999999999 666554 5789999998876432 233333322 3699999999884321
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcC-CCCCCC---ccccCCCcc--eeE
Q psy7780 154 DSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATN-RIETLD---PALIRPGRI--DRK 227 (317)
Q Consensus 154 ~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN-~~~~Ld---~al~rpgRf--~~~ 227 (317)
+.+..+..+++.+... +.. +|.|++ .+..++ +.+.+ || ...
T Consensus 107 --------~~~~~L~~~l~~~~~~----------------------~~~-iIits~~~~~~~~~~~~~L~~--r~~~~~~ 153 (226)
T TIGR03420 107 --------EWQEALFHLYNRVREA----------------------GGR-LLIAGRAAPAQLPLRLPDLRT--RLAWGLV 153 (226)
T ss_pred --------HHHHHHHHHHHHHHHc----------------------CCe-EEEECCCChHHCCcccHHHHH--HHhcCee
Confidence 1123444444433221 223 455554 444432 67887 77 478
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q psy7780 228 IEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSK 300 (317)
Q Consensus 228 I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al 300 (317)
+.+|+|+.+++..+++.+..+..+. ++..+..++.... -+.+++.++++++...+.+++ ..|+.+.+.+.+
T Consensus 154 i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~-gn~r~L~~~l~~~~~~~~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 154 FQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGS-RDMGSLMALLDALDRASLAAK-RKITIPFVKEVL 225 (226)
T ss_pred EecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHh
Confidence 9999999999999999876544333 2333566777544 489999999998776555544 579999887765
No 88
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.48 E-value=4.3e-13 Score=125.85 Aligned_cols=176 Identities=15% Similarity=0.205 Sum_probs=110.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCC-----ceEEEEechhhhhhh-------------cCC-------chHHHHHHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS-----ATFLRVVGSELIQKY-------------LGD-------GPKLVRELFRVAE 133 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~-----~~~~~v~~s~l~~~~-------------~g~-------~~~~l~~~f~~a~ 133 (317)
+.+|+||||||||+ ++|+++. .+++.++++++.... .+. ....++.+.....
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYA 117 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 57899999999999 7777763 357888887764321 111 1223333333332
Q ss_pred hhC-----CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEc
Q psy7780 134 EHA-----PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMAT 208 (317)
Q Consensus 134 ~~~-----P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tT 208 (317)
... +.+|+|||+|.+... .+..|..+++. .. ....+|++|
T Consensus 118 ~~~~~~~~~~vlilDe~~~l~~~-----------~~~~L~~~le~---~~---------------------~~~~~Il~~ 162 (337)
T PRK12402 118 SYRPLSADYKTILLDNAEALRED-----------AQQALRRIMEQ---YS---------------------RTCRFIIAT 162 (337)
T ss_pred hcCCCCCCCcEEEEeCcccCCHH-----------HHHHHHHHHHh---cc---------------------CCCeEEEEe
Confidence 322 459999999987321 23344444443 21 234466677
Q ss_pred CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy7780 209 NRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRER 287 (317)
Q Consensus 209 N~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~ 287 (317)
+.+..+.+++++ |+ ..+.|++|+.++...+++..+.+.++. ++..+..++..+. +|++.+++.....+ . .
T Consensus 163 ~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~----gdlr~l~~~l~~~~-~-~ 233 (337)
T PRK12402 163 RQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAG----GDLRKAILTLQTAA-L-A 233 (337)
T ss_pred CChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHHH-H-c
Confidence 777788888988 87 478999999999999999887765543 3344666777653 35555555443333 2 2
Q ss_pred CCCcCHHHHHHHHH
Q psy7780 288 RMKVTNEDFKKSKE 301 (317)
Q Consensus 288 ~~~it~~d~~~al~ 301 (317)
...||.+++.+++.
T Consensus 234 ~~~It~~~v~~~~~ 247 (337)
T PRK12402 234 AGEITMEAAYEALG 247 (337)
T ss_pred CCCCCHHHHHHHhC
Confidence 34688888877654
No 89
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=2.7e-13 Score=132.39 Aligned_cols=170 Identities=12% Similarity=0.166 Sum_probs=122.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCC------------------------ceEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS------------------------ATFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~------------------------~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
++||+||||+|||+ ++|..++ ..++++++++ ..+-..+|++.+.+..
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas------~~~vddIR~Iie~~~~ 110 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAAS------NTSVDDIKVILENSCY 110 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEeccc------CCCHHHHHHHHHHHHh
Confidence 58999999999999 6776543 3456666643 1234568888777653
Q ss_pred h----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 H----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
. ...|++|||+|.+.. ..++.|+..++... .++.+|++|+.
T Consensus 111 ~P~~~~~KVvIIDEah~Ls~--------------~A~NaLLK~LEePp---------------------~~v~fIlatte 155 (491)
T PRK14964 111 LPISSKFKVYIIDEVHMLSN--------------SAFNALLKTLEEPA---------------------PHVKFILATTE 155 (491)
T ss_pred ccccCCceEEEEeChHhCCH--------------HHHHHHHHHHhCCC---------------------CCeEEEEEeCC
Confidence 2 235999999998832 23445555555432 56788888889
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
++.+++.+++ |+. .+.|..++.++..+.++..+.+.+.. ++..+..+++.+.| +.+++.+++..+...+ ..
T Consensus 156 ~~Kl~~tI~S--Rc~-~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR~alslLdqli~y~----~~ 227 (491)
T PRK14964 156 VKKIPVTIIS--RCQ-RFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMRNALFLLEQAAIYS----NN 227 (491)
T ss_pred hHHHHHHHHH--hhe-eeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc----CC
Confidence 9999999999 994 79999999999999998887765544 33446777888766 8888888888776543 23
Q ss_pred CcCHHHHHHHH
Q psy7780 290 KVTNEDFKKSK 300 (317)
Q Consensus 290 ~it~~d~~~al 300 (317)
.||.+++.+.+
T Consensus 228 ~It~e~V~~ll 238 (491)
T PRK14964 228 KISEKSVRDLL 238 (491)
T ss_pred CCCHHHHHHHH
Confidence 67888776653
No 90
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=5.3e-13 Score=133.36 Aligned_cols=168 Identities=18% Similarity=0.217 Sum_probs=118.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||+|||||+ .+|+.+.+ +++.+++++ +.+...++++.+.+..
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~ 113 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKY 113 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhh
Confidence 47999999999998 66666543 445555432 2445678888887653
Q ss_pred h----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 H----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
. ...|++|||+|.+.. ..++.|+..++... .++++|++|+.
T Consensus 114 ~p~~~~~kViIIDE~~~Lt~--------------~a~naLLKtLEepp---------------------~~~ifIlatt~ 158 (559)
T PRK05563 114 APSEAKYKVYIIDEVHMLST--------------GAFNALLKTLEEPP---------------------AHVIFILATTE 158 (559)
T ss_pred CcccCCeEEEEEECcccCCH--------------HHHHHHHHHhcCCC---------------------CCeEEEEEeCC
Confidence 2 235999999998832 23445555554432 56778888888
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
++.|++.+++ |+. .+.|+.|+.++...+++..+++.++. ++..+..++..+.| +.+++.+++..+...+ ..
T Consensus 159 ~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R~al~~Ldq~~~~~----~~ 230 (559)
T PRK05563 159 PHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMRDALSILDQAISFG----DG 230 (559)
T ss_pred hhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc----cC
Confidence 9999999999 995 78999999999999999888765543 23346667877776 8888888888765542 34
Q ss_pred CcCHHHHHH
Q psy7780 290 KVTNEDFKK 298 (317)
Q Consensus 290 ~it~~d~~~ 298 (317)
.|+.+|+.+
T Consensus 231 ~It~~~V~~ 239 (559)
T PRK05563 231 KVTYEDALE 239 (559)
T ss_pred CCCHHHHHH
Confidence 567666544
No 91
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=5.9e-13 Score=131.19 Aligned_cols=168 Identities=17% Similarity=0.170 Sum_probs=115.1
Q ss_pred HHHhhhcCCCchh---hhhhcCCc-----------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHh--
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSA-----------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE-- 134 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~-----------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~-- 134 (317)
+||+||||||||+ ++|+.+.+ .++.+++++ ..+...++++.+.+..
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p 112 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAP 112 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhcc
Confidence 5999999999999 77777753 245555431 1234456666555543
Q ss_pred --hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC
Q psy7780 135 --HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE 212 (317)
Q Consensus 135 --~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~ 212 (317)
..+.||+|||+|.+.. ..+..++..++... .++++|++||.++
T Consensus 113 ~~~~~kVVIIDEad~ls~--------------~a~naLLk~LEep~---------------------~~t~~Il~t~~~~ 157 (504)
T PRK14963 113 LRGGRKVYILDEAHMMSK--------------SAFNALLKTLEEPP---------------------EHVIFILATTEPE 157 (504)
T ss_pred ccCCCeEEEEECccccCH--------------HHHHHHHHHHHhCC---------------------CCEEEEEEcCChh
Confidence 2356999999986621 23445566555432 4577888889999
Q ss_pred CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCc
Q psy7780 213 TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKV 291 (317)
Q Consensus 213 ~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~i 291 (317)
.+++++++ |+. .++|+.|+.++....++..+.+.++. ++..+..++..+.| +.+++.++++.+... ...|
T Consensus 158 kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dlR~aln~Lekl~~~-----~~~I 228 (504)
T PRK14963 158 KMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AMRDAESLLERLLAL-----GTPV 228 (504)
T ss_pred hCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc-----CCCC
Confidence 99999999 985 79999999999999999887765543 23346667777666 667777777755322 3367
Q ss_pred CHHHHHHHH
Q psy7780 292 TNEDFKKSK 300 (317)
Q Consensus 292 t~~d~~~al 300 (317)
|.+++.+.+
T Consensus 229 t~~~V~~~l 237 (504)
T PRK14963 229 TRKQVEEAL 237 (504)
T ss_pred CHHHHHHHH
Confidence 877776653
No 92
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=3.1e-13 Score=135.53 Aligned_cols=171 Identities=19% Similarity=0.184 Sum_probs=119.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce------------------------EEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT------------------------FLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~------------------------~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||||||||+ ++|+++++. ++.+++++ +.+...++++++.+..
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~ 113 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQY 113 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHh
Confidence 47999999999999 788876553 22333221 2334568888776542
Q ss_pred h----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 H----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
. ...|++|||+|.+.. ..++.||..|+... +.+.+|++||.
T Consensus 114 ~P~~gk~KVIIIDEad~Ls~--------------~A~NALLKtLEEPp---------------------~~v~fILaTtd 158 (709)
T PRK08691 114 APTAGKYKVYIIDEVHMLSK--------------SAFNAMLKTLEEPP---------------------EHVKFILATTD 158 (709)
T ss_pred hhhhCCcEEEEEECccccCH--------------HHHHHHHHHHHhCC---------------------CCcEEEEEeCC
Confidence 2 236999999997632 12334555554322 56778889999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
+..+.+.+++ || ..+.|+.++.++....++..+.+.++. ++..+..|++.+.| +.+++.+++..+... +..
T Consensus 159 ~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slRdAlnLLDqaia~----g~g 230 (709)
T PRK08691 159 PHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMRDALSLLDQAIAL----GSG 230 (709)
T ss_pred ccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHHHHHHHHHHHHHh----cCC
Confidence 9999999998 99 578999999999999999888765544 23346778877766 888999998876654 234
Q ss_pred CcCHHHHHHHHH
Q psy7780 290 KVTNEDFKKSKE 301 (317)
Q Consensus 290 ~it~~d~~~al~ 301 (317)
.|+.+++...+.
T Consensus 231 ~It~e~V~~lLG 242 (709)
T PRK08691 231 KVAENDVRQMIG 242 (709)
T ss_pred CcCHHHHHHHHc
Confidence 577777666543
No 93
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=3.6e-13 Score=137.71 Aligned_cols=154 Identities=19% Similarity=0.169 Sum_probs=107.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceE------------------------EEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATF------------------------LRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~------------------------~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||||||||+ ++|+.+++.- +.+++++ ..+...+|.+.+.+..
T Consensus 40 AyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas------~~kVDdIReLie~v~~ 113 (944)
T PRK14949 40 AYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAAS------RTKVDDTRELLDNVQY 113 (944)
T ss_pred EEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEecccc------ccCHHHHHHHHHHHHh
Confidence 35899999999999 8888887641 1122110 0223456666665542
Q ss_pred ----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 ----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
....|++|||+|.+.. ..++.||..|+... +++.+|++|+.
T Consensus 114 ~P~~gk~KViIIDEAh~LT~--------------eAqNALLKtLEEPP---------------------~~vrFILaTTe 158 (944)
T PRK14949 114 RPSRGRFKVYLIDEVHMLSR--------------SSFNALLKTLEEPP---------------------EHVKFLLATTD 158 (944)
T ss_pred hhhcCCcEEEEEechHhcCH--------------HHHHHHHHHHhccC---------------------CCeEEEEECCC
Confidence 2235999999999832 23444555554432 56788888999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHH
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAG 280 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~ 280 (317)
+..|.+.|++ || .++.|.+++.++..+.|+..+...++. .+..+..|++.+.| ++|++.++|..|.
T Consensus 159 ~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~ALnLLdQal 225 (944)
T PRK14949 159 PQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDALSLTDQAI 225 (944)
T ss_pred chhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9999999999 99 589999999999999888877654333 22346677777777 7888888887665
No 94
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.45 E-value=5.7e-13 Score=129.58 Aligned_cols=188 Identities=16% Similarity=0.196 Sum_probs=118.8
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~ 155 (317)
|.+|||+||+|||+ ++|+++ +..++++++.++...+.......-...|.... ..+.+|+|||++.+.++.
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~--- 218 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG--- 218 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh---
Confidence 56899999999999 778765 67889999887765432211111112244332 245799999999886432
Q ss_pred CCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC-CC---CCCccccCCCcce--eEEE
Q psy7780 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR-IE---TLDPALIRPGRID--RKIE 229 (317)
Q Consensus 156 ~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~-~~---~Ld~al~rpgRf~--~~I~ 229 (317)
....++..+++.+... +.. +|.|+|. |. .+++.|++ ||. ..+.
T Consensus 219 --~~qeelf~l~N~l~~~--------------------------~k~-IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~ 267 (445)
T PRK12422 219 --ATQEEFFHTFNSLHTE--------------------------GKL-IVISSTCAPQDLKAMEERLIS--RFEWGIAIP 267 (445)
T ss_pred --hhHHHHHHHHHHHHHC--------------------------CCc-EEEecCCCHHHHhhhHHHHHh--hhcCCeEEe
Confidence 1122333333333221 333 5555544 43 47789999 995 7899
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHH-HHHHh-cCCCcCHHHHHHHHHHHHh
Q psy7780 230 FPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGL-MALRE-RRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 230 ~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~-~a~~~-~~~~it~~d~~~al~~v~~ 305 (317)
+++|+.++|..|++......++. ++..++.++....+ +.+++...++..+. .|... ....++.++++++++.+..
T Consensus 268 l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~~ 345 (445)
T PRK12422 268 LHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDVLE 345 (445)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhh
Confidence 99999999999999988765543 22234556666554 56677766665532 12221 2356899999999887654
No 95
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.45 E-value=4.1e-13 Score=125.24 Aligned_cols=125 Identities=19% Similarity=0.302 Sum_probs=86.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHH-hhCCceEeecccccccccccCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAE-EHAPSIVFIDEIDAVGTKRYDSNS 157 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~-~~~P~Ii~iDEiD~l~~~r~~~~~ 157 (317)
+.||+||||+|||+ ++|++.+.+++.+++++ .. .......+........ ...+.+|+|||+|.+...
T Consensus 45 ~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~------ 115 (316)
T PHA02544 45 MLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA------ 115 (316)
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH------
Confidence 56679999999999 89999999999999876 11 1111111222111111 124689999999987321
Q ss_pred CchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHH
Q psy7780 158 GGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 237 (317)
Q Consensus 158 ~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~ 237 (317)
+.+..+..+++. .. .++.+|++||.++.+++++++ ||. .+.|+.|+.++
T Consensus 116 ----~~~~~L~~~le~---~~---------------------~~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~ 164 (316)
T PHA02544 116 ----DAQRHLRSFMEA---YS---------------------KNCSFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEE 164 (316)
T ss_pred ----HHHHHHHHHHHh---cC---------------------CCceEEEEcCChhhchHHHHh--hce-EEEeCCCCHHH
Confidence 123444455443 21 456788999999999999999 995 78999999999
Q ss_pred HHHHHHHHh
Q psy7780 238 KRRIFNIHT 246 (317)
Q Consensus 238 r~~Il~~~l 246 (317)
+.++++.++
T Consensus 165 ~~~il~~~~ 173 (316)
T PHA02544 165 QIEMMKQMI 173 (316)
T ss_pred HHHHHHHHH
Confidence 998876553
No 96
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.43 E-value=9.3e-13 Score=124.59 Aligned_cols=170 Identities=17% Similarity=0.205 Sum_probs=115.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||||+|||+ ++|+.+.+ .++.+++.. ..+...++++++.+..
T Consensus 38 ~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~ 111 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKY 111 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhc
Confidence 46899999999999 66666532 244444431 1234467788887654
Q ss_pred hC----CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 HA----PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ~~----P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
.. ..||+|||+|.+.. .....++..++... .++++|++||+
T Consensus 112 ~p~~~~~~vviidea~~l~~--------------~~~~~Ll~~le~~~---------------------~~~~lIl~~~~ 156 (355)
T TIGR02397 112 APSSGKYKVYIIDEVHMLSK--------------SAFNALLKTLEEPP---------------------EHVVFILATTE 156 (355)
T ss_pred CcccCCceEEEEeChhhcCH--------------HHHHHHHHHHhCCc---------------------cceeEEEEeCC
Confidence 32 35999999998732 12345555554422 55778888899
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
++.+.+++++ |+. .++|++|+.++..++++.++++.+.. ++..+..++..+.| +++.+.+.++.+...+ ..
T Consensus 157 ~~~l~~~l~s--r~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~~a~~~lekl~~~~----~~ 228 (355)
T TIGR02397 157 PHKIPATILS--RCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLRDALSLLDQLISFG----NG 228 (355)
T ss_pred HHHHHHHHHh--hee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChHHHHHHHHHHHhhc----CC
Confidence 9999999999 985 78999999999999999888765543 22345566777655 6777777776655442 23
Q ss_pred CcCHHHHHHHH
Q psy7780 290 KVTNEDFKKSK 300 (317)
Q Consensus 290 ~it~~d~~~al 300 (317)
.|+.+|+.+++
T Consensus 229 ~it~~~v~~~~ 239 (355)
T TIGR02397 229 NITYEDVNELL 239 (355)
T ss_pred CCCHHHHHHHh
Confidence 47877776554
No 97
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=9.4e-13 Score=131.91 Aligned_cols=170 Identities=15% Similarity=0.155 Sum_probs=116.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc-----------------------------eEEEEechhhhhhhcCCchHHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA-----------------------------TFLRVVGSELIQKYLGDGPKLVRELF 129 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~-----------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f 129 (317)
.+||+||+|||||+ ++|+.+++ .++.+++++ ..+-..+|++.
T Consensus 40 a~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli 113 (618)
T PRK14951 40 AYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLL 113 (618)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHH
Confidence 45899999999999 88877765 233333321 12234677777
Q ss_pred HHHHhhC----CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEE
Q psy7780 130 RVAEEHA----PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVI 205 (317)
Q Consensus 130 ~~a~~~~----P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI 205 (317)
+.+.... -.|++|||+|.+... .++.||..++... +++.+|
T Consensus 114 ~~~~~~p~~g~~KV~IIDEvh~Ls~~--------------a~NaLLKtLEEPP---------------------~~~~fI 158 (618)
T PRK14951 114 EQAVYKPVQGRFKVFMIDEVHMLTNT--------------AFNAMLKTLEEPP---------------------EYLKFV 158 (618)
T ss_pred HHHHhCcccCCceEEEEEChhhCCHH--------------HHHHHHHhcccCC---------------------CCeEEE
Confidence 7654321 249999999998432 2334555544322 567788
Q ss_pred EEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q psy7780 206 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMAL 284 (317)
Q Consensus 206 ~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~ 284 (317)
++|+.+..+.+.+++ |+ ..++|..++.++..+.++..+.+.++. ++..+..|++.+.| +.+++.+++..+...
T Consensus 159 L~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G-slR~al~lLdq~ia~-- 232 (618)
T PRK14951 159 LATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG-SMRDALSLTDQAIAF-- 232 (618)
T ss_pred EEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh--
Confidence 888889999999999 98 589999999999999998887665544 23346777887777 788888888765544
Q ss_pred HhcCCCcCHHHHHHHH
Q psy7780 285 RERRMKVTNEDFKKSK 300 (317)
Q Consensus 285 ~~~~~~it~~d~~~al 300 (317)
+...|+.+++.+.+
T Consensus 233 --~~~~It~~~V~~~L 246 (618)
T PRK14951 233 --GSGQLQEAAVRQML 246 (618)
T ss_pred --cCCCcCHHHHHHHH
Confidence 23457766665543
No 98
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=8.4e-13 Score=131.06 Aligned_cols=171 Identities=16% Similarity=0.157 Sum_probs=117.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce------------------------EEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT------------------------FLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~------------------------~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||||+|||+ ++|+.+++. ++.++++. ..+...+|++.+.+..
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~ 113 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQY 113 (527)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhh
Confidence 46899999999999 888877652 23333221 1234567787777643
Q ss_pred h----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 H----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
. ...|++|||+|.+.. ...+.||..++... +.+.+|++|+.
T Consensus 114 ~p~~~~~kVvIIDEad~ls~--------------~a~naLLK~LEepp---------------------~~~~fIL~t~d 158 (527)
T PRK14969 114 APTRGRFKVYIIDEVHMLSK--------------SAFNAMLKTLEEPP---------------------EHVKFILATTD 158 (527)
T ss_pred CcccCCceEEEEcCcccCCH--------------HHHHHHHHHHhCCC---------------------CCEEEEEEeCC
Confidence 2 235999999998742 12334555554432 56788888888
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
++.+.+.+++ |+ ..++|..++.++..+.++..+.+.++. .+..+..+++.+.| +.+++.+++..|... +..
T Consensus 159 ~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr~al~lldqai~~----~~~ 230 (527)
T PRK14969 159 PQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMRDALSLLDQAIAY----GGG 230 (527)
T ss_pred hhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cCC
Confidence 9999989998 98 589999999999998888877654443 22335666777665 788888888876543 345
Q ss_pred CcCHHHHHHHHH
Q psy7780 290 KVTNEDFKKSKE 301 (317)
Q Consensus 290 ~it~~d~~~al~ 301 (317)
.|+.+++.+.+.
T Consensus 231 ~I~~~~v~~~~~ 242 (527)
T PRK14969 231 TVNESEVRAMLG 242 (527)
T ss_pred CcCHHHHHHHHC
Confidence 677777766543
No 99
>KOG0989|consensus
Probab=99.41 E-value=5.6e-13 Score=120.38 Aligned_cols=157 Identities=18% Similarity=0.235 Sum_probs=103.0
Q ss_pred ccCCCceEeechh------------------hHHHhhhcCCCchh---hhhhcCCc------eEEEEechhhhhhhcCCc
Q psy7780 69 ANQTSATFLRVVG------------------SELIQKYLGDGPKL---AVANQTSA------TFLRVVGSELIQKYLGDG 121 (317)
Q Consensus 69 ~~~~~~~~~~i~g------------------~~Ll~G~pGtGKT~---aiA~~~~~------~~~~v~~s~l~~~~~g~~ 121 (317)
++.++-+|+++.| ++|||||||||||+ +.|.++.. -+.+.+.|+-.+..++
T Consensus 28 eKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvv-- 105 (346)
T KOG0989|consen 28 EKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVV-- 105 (346)
T ss_pred HHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccch--
Confidence 3446677888777 67999999999999 88888765 2233344443322211
Q ss_pred hHHHHHHHHHHHhhC---------C-ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhc
Q psy7780 122 PKLVRELFRVAEEHA---------P-SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYS 191 (317)
Q Consensus 122 ~~~l~~~f~~a~~~~---------P-~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~ 191 (317)
...++ -|+...... | -||+|||+|.+... .+.+| ..-|+.+.
T Consensus 106 r~Kik-~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd-----------aq~aL---rr~mE~~s------------- 157 (346)
T KOG0989|consen 106 REKIK-NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD-----------AQAAL---RRTMEDFS------------- 157 (346)
T ss_pred hhhhc-CHHHHhhccccccCCCCCcceEEEEechhhhhHH-----------HHHHH---HHHHhccc-------------
Confidence 11111 233332211 2 59999999988532 23444 44445433
Q ss_pred ccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCC
Q psy7780 192 SLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDD 266 (317)
Q Consensus 192 ~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g 266 (317)
..+.+|..||+++.|++.+.+ |+. ++.|+....+.....|+....+.++. ++..+..|+..++|
T Consensus 158 --------~~trFiLIcnylsrii~pi~S--RC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 158 --------RTTRFILICNYLSRIIRPLVS--RCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG 222 (346)
T ss_pred --------cceEEEEEcCChhhCChHHHh--hHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 568899999999999999999 996 78888888877777777776665554 33346667777655
No 100
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=1.1e-12 Score=129.81 Aligned_cols=169 Identities=14% Similarity=0.196 Sum_probs=112.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||||||||+ ++|+.+.+ .++.+++..- .+...++++.+.+..
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~------~gvd~ir~ii~~~~~ 113 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASR------TGVEETKEILDNIQY 113 (546)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccc------cCHHHHHHHHHHHHh
Confidence 36899999999999 77877654 3444443211 122345666665542
Q ss_pred h----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 H----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
. ...|++|||+|.+... ..+.||..++... +.+.+|++|+.
T Consensus 114 ~p~~g~~kViIIDEa~~ls~~--------------a~naLLK~LEepp---------------------~~v~fIL~Ttd 158 (546)
T PRK14957 114 MPSQGRYKVYLIDEVHMLSKQ--------------SFNALLKTLEEPP---------------------EYVKFILATTD 158 (546)
T ss_pred hhhcCCcEEEEEechhhccHH--------------HHHHHHHHHhcCC---------------------CCceEEEEECC
Confidence 2 2459999999987421 2234444444322 56778888888
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
+..+.+.+++ |+ ..++|..++.++....++..+.+.++. ++..+..++..+.| +.+++.+++..+...+ ..
T Consensus 159 ~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dlR~alnlLek~i~~~----~~ 230 (546)
T PRK14957 159 YHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SLRDALSLLDQAISFC----GG 230 (546)
T ss_pred hhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc----cC
Confidence 9999999999 98 589999999999988888877665443 33345667777655 7788888887665432 14
Q ss_pred CcCHHHHHHH
Q psy7780 290 KVTNEDFKKS 299 (317)
Q Consensus 290 ~it~~d~~~a 299 (317)
.|+.+++.++
T Consensus 231 ~It~~~V~~~ 240 (546)
T PRK14957 231 ELKQAQIKQM 240 (546)
T ss_pred CCCHHHHHHH
Confidence 5777776654
No 101
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.41 E-value=1.6e-12 Score=116.42 Aligned_cols=175 Identities=14% Similarity=0.118 Sum_probs=109.1
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~ 155 (317)
+.+|+||||||||+ ++|+++ +..+.+++....... ..++++.... -.+|+|||++.+..+.
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~--- 113 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF--------VPEVLEGMEQ--LSLVCIDNIECIAGDE--- 113 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh--------hHHHHHHhhh--CCEEEEeChhhhcCCH---
Confidence 56799999999998 666654 345566665543221 1122222222 2589999999885432
Q ss_pred CCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEc-CCCCC---CCccccCCCcce--eEEE
Q psy7780 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMAT-NRIET---LDPALIRPGRID--RKIE 229 (317)
Q Consensus 156 ~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tT-N~~~~---Ld~al~rpgRf~--~~I~ 229 (317)
. .+..+..+++.+-. . ++..+|+|+ +.|.. +.|.|++ |+. ..+.
T Consensus 114 --~----~~~~lf~l~n~~~e---~-------------------g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~ 163 (235)
T PRK08084 114 --L----WEMAIFDLYNRILE---S-------------------GRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYK 163 (235)
T ss_pred --H----HHHHHHHHHHHHHH---c-------------------CCCeEEEeCCCChHHcCcccHHHHH--HHhCCceee
Confidence 1 12233333333211 1 333344455 55555 5799999 995 7899
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q psy7780 230 FPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKE 301 (317)
Q Consensus 230 ~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~ 301 (317)
+.+|+.+++.++++......++. ++.-++.++++.+| +.+.+..+++.....++.++ ..||.+.+++++.
T Consensus 164 l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~~-~~it~~~~k~~l~ 234 (235)
T PRK08084 164 LQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRASITAQ-RKLTIPFVKEILK 234 (235)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHc
Confidence 99999999999998865443333 23346667777766 78888888887543444433 4599988887753
No 102
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.41 E-value=1.7e-12 Score=124.96 Aligned_cols=192 Identities=21% Similarity=0.293 Sum_probs=119.2
Q ss_pred hhHHHhhhcCCCchh---hhhhcCCceEEEEechhhhh-hhcCCc-hHHHHHHHHHH----HhhCCceEeeccccccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ-KYLGDG-PKLVRELFRVA----EEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~-~~~g~~-~~~l~~~f~~a----~~~~P~Ii~iDEiD~l~~~ 151 (317)
+++||+||||||||+ ++|..++.+|+.++++.+.. .|+|+. +..+..++..+ .+..++||||||||.+..+
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~ 188 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARK 188 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccc
Confidence 478999999999999 99999999999999998764 688875 34455555432 3456799999999999877
Q ss_pred ccCCC---CCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC----------------
Q psy7780 152 RYDSN---SGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE---------------- 212 (317)
Q Consensus 152 r~~~~---~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~---------------- 212 (317)
+.+.. +-+...+++.|.++| ++-...........+.. .+.++|.|+|-..
T Consensus 189 ~~~~~~~~d~s~~~vQ~~LL~~L---eg~~~~v~~~gg~~~~~--------~~~~~i~t~nilfi~~Gaf~g~~~~~~~r 257 (412)
T PRK05342 189 SENPSITRDVSGEGVQQALLKIL---EGTVASVPPQGGRKHPQ--------QEFIQVDTTNILFICGGAFDGLEKIIKQR 257 (412)
T ss_pred cCCCCcCCCcccHHHHHHHHHHH---hcCeEEeCCCCCcCcCC--------CCeEEeccCCceeeecccccCcHHHHHHH
Confidence 43211 111224566666665 43211100000000000 1233333333300
Q ss_pred ------------------------------------CCCccccCCCcceeEEEeCCCCHHHHHHHHHH----HhcC----
Q psy7780 213 ------------------------------------TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNI----HTSR---- 248 (317)
Q Consensus 213 ------------------------------------~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~----~l~~---- 248 (317)
.+.|+++. |++.++.|.+.+.++..+|+.. .+++
T Consensus 258 ~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflg--Rld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~ 335 (412)
T PRK05342 258 LGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIG--RLPVVATLEELDEEALVRILTEPKNALVKQYQKL 335 (412)
T ss_pred HhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhC--CCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 13566666 9999999999999999999973 2221
Q ss_pred -----CCCC-cCCCHHHHHHh--CCCCCHHHHHHHHHHHHHHHHH
Q psy7780 249 -----MTLA-EDVNLQELIMA--KDDLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 249 -----~~~~-~~~~~~~ia~~--t~g~s~~dl~~l~~~A~~~a~~ 285 (317)
+.+. ++..++.|++. ..++-.+.|+.+++........
T Consensus 336 l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~ 380 (412)
T PRK05342 336 FEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMF 380 (412)
T ss_pred HHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHH
Confidence 1111 22335667765 4456678888888876655544
No 103
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.40 E-value=1e-12 Score=123.42 Aligned_cols=199 Identities=25% Similarity=0.248 Sum_probs=128.3
Q ss_pred hhhHHHhhhcCCCchh---hhhhcCCceEEEEechhhhh--hhcCCchHHHH------------HHHHHHHhhCCceEee
Q psy7780 80 VGSELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ--KYLGDGPKLVR------------ELFRVAEEHAPSIVFI 142 (317)
Q Consensus 80 ~g~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~--~~~g~~~~~l~------------~~f~~a~~~~P~Ii~i 142 (317)
+||.||.|+||||||+ ++|..++.+|+++.|+.-+. ...|...-..+ .+|...+ +|+|+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~ 118 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLL 118 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc----eEEEE
Confidence 4489999999999999 99999999999999975332 12222211111 0111111 39999
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccc-ccCCCCeEEEEEcC-----CCCCCCc
Q psy7780 143 DEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTL-IYLPGDVKVIMATN-----RIETLDP 216 (317)
Q Consensus 143 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~-~~~~~~v~vI~tTN-----~~~~Ld~ 216 (317)
|||+... .+++..|.+.+++.. ++..... ...+..++||+|+| ....|++
T Consensus 119 DEInra~-----------p~~q~aLl~~l~e~~-------------vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~e 174 (329)
T COG0714 119 DEINRAP-----------PEVQNALLEALEERQ-------------VTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPE 174 (329)
T ss_pred eccccCC-----------HHHHHHHHHHHhCcE-------------EEECCcCCcCCCCCCEEEEccCccccCCCcCCCH
Confidence 9998753 335666666666522 2233334 56678899999999 5566999
Q ss_pred cccCCCcceeEEEeCCC-CHHHHHHHHHHHhcCC------CCCcCCCH-----------------------HHHHHhC--
Q psy7780 217 ALIRPGRIDRKIEFPLP-DEKTKRRIFNIHTSRM------TLAEDVNL-----------------------QELIMAK-- 264 (317)
Q Consensus 217 al~rpgRf~~~I~~~~P-~~~~r~~Il~~~l~~~------~~~~~~~~-----------------------~~ia~~t-- 264 (317)
|+++ ||...+++++| +.++...++....... ....-+.. ..+...+
T Consensus 175 A~ld--Rf~~~~~v~yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (329)
T COG0714 175 ALLD--RFLLRIYVDYPDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRLQKEVKKVPVSDEVIDYIVTLVAALRE 252 (329)
T ss_pred HHHh--hEEEEEecCCCCchHHHHHHHHhCccccccccchhhhhhhCHHHHHHHHhhhccCCchHHHHHHHHHHHHhhcc
Confidence 9999 99889999999 5555555555443311 00000000 1111111
Q ss_pred -----CCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhc
Q psy7780 265 -----DDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKK 308 (317)
Q Consensus 265 -----~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~ 308 (317)
.|.+++...++...+...|...++..+..+|+.........++.
T Consensus 253 ~~~~~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~~~~~~~~~~~~ 301 (329)
T COG0714 253 APDVALGASPRASLALLAALRALALLDGRDAVIPDDVKALAEPALAHRL 301 (329)
T ss_pred ccchhccCCchhHHHHHHHHHhhhhhcCccccCHHHHHHHhhhhhhhhh
Confidence 23467777777777777777788888999998888877776554
No 104
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=1.5e-12 Score=129.97 Aligned_cols=170 Identities=14% Similarity=0.137 Sum_probs=109.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce------------------------EEEEechhhhhhhcCCchHHHHHHHHHHH-
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT------------------------FLRVVGSELIQKYLGDGPKLVRELFRVAE- 133 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~------------------------~~~v~~s~l~~~~~g~~~~~l~~~f~~a~- 133 (317)
.+||+||||||||+ ++|+.+.+. ++.+++..- .+-..++.+.+.+.
T Consensus 40 a~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~a~~------~~Id~iR~L~~~~~~ 113 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASN------RGIDDAKRLKEAIGY 113 (624)
T ss_pred eEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEecccc------cCHHHHHHHHHHHHh
Confidence 57899999999999 888887653 444443210 11223444333332
Q ss_pred ---hhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 134 ---EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 134 ---~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
.....||+|||+|.+... ..+.|+..++... .++++|++||.
T Consensus 114 ~p~~g~~kVIIIDEad~Lt~~--------------a~naLLk~LEEP~---------------------~~~ifILaTt~ 158 (624)
T PRK14959 114 APMEGRYKVFIIDEAHMLTRE--------------AFNALLKTLEEPP---------------------ARVTFVLATTE 158 (624)
T ss_pred hhhcCCceEEEEEChHhCCHH--------------HHHHHHHHhhccC---------------------CCEEEEEecCC
Confidence 223469999999988421 2334444444321 56788889999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
++.+.+.+++ |+. .+.|+.++.++...+++..+.+.++. ++..+..+++.+.| +.+++.+++..+. ..+..
T Consensus 159 ~~kll~TI~S--Rcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G-dlR~Al~lLeqll----~~g~~ 230 (624)
T PRK14959 159 PHKFPVTIVS--RCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG-SVRDSMSLLGQVL----ALGES 230 (624)
T ss_pred hhhhhHHHHh--hhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH----HhcCC
Confidence 9999999999 985 78999999999999998877655432 23345667776655 5566666665432 22444
Q ss_pred CcCHHHHHHHH
Q psy7780 290 KVTNEDFKKSK 300 (317)
Q Consensus 290 ~it~~d~~~al 300 (317)
.|+.+++.+++
T Consensus 231 ~It~d~V~~~l 241 (624)
T PRK14959 231 RLTIDGARGVL 241 (624)
T ss_pred CcCHHHHHHHh
Confidence 67777765443
No 105
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=3.1e-12 Score=129.44 Aligned_cols=175 Identities=18% Similarity=0.227 Sum_probs=114.7
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEE---Eechhhhh---h----h-----cCCchHHHHHHHHHHHhh----CCce
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLR---VVGSELIQ---K----Y-----LGDGPKLVRELFRVAEEH----APSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~---v~~s~l~~---~----~-----~g~~~~~l~~~f~~a~~~----~P~I 139 (317)
.+||+||||+|||+ ++|+.+.+.-.. -.|..... . + ...+...+|++.+.+... ...|
T Consensus 42 AYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV 121 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKI 121 (725)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEE
Confidence 47999999999999 777777653110 01111100 0 0 012345588888777643 2469
Q ss_pred EeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCcccc
Q psy7780 140 VFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALI 219 (317)
Q Consensus 140 i~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~ 219 (317)
++|||+|.+... ....||..|+... ..+++|++|+.++.|+++++
T Consensus 122 ~IIDEa~~LT~~--------------A~NALLKtLEEPP---------------------~~tifILaTte~~KLl~TI~ 166 (725)
T PRK07133 122 YIIDEVHMLSKS--------------AFNALLKTLEEPP---------------------KHVIFILATTEVHKIPLTIL 166 (725)
T ss_pred EEEEChhhCCHH--------------HHHHHHHHhhcCC---------------------CceEEEEEcCChhhhhHHHH
Confidence 999999987421 2334454444322 56788888899999999999
Q ss_pred CCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCc-CCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHH
Q psy7780 220 RPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAE-DVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKK 298 (317)
Q Consensus 220 rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~-~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~ 298 (317)
+ ||. ++.|.+|+.++...+++..+.+.++.- +..+..++..+.| +.+++.+++..+.... ...|+.+++.+
T Consensus 167 S--Rcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslLekl~~y~----~~~It~e~V~e 238 (725)
T PRK07133 167 S--RVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIAEQVSIFG----NNKITLKNVEE 238 (725)
T ss_pred h--hce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc----cCCCCHHHHHH
Confidence 9 995 899999999999999988776555432 2235667777666 6777777777654332 23377766655
Q ss_pred H
Q psy7780 299 S 299 (317)
Q Consensus 299 a 299 (317)
.
T Consensus 239 l 239 (725)
T PRK07133 239 L 239 (725)
T ss_pred H
Confidence 3
No 106
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.38 E-value=2e-12 Score=126.08 Aligned_cols=186 Identities=15% Similarity=0.165 Sum_probs=126.2
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEechhhhhhhcCCch---HHHHHHHHHHHhhCCceEeecccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVVGSELIQKYLGDGP---KLVRELFRVAEEHAPSIVFIDEIDAVGT 150 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s~l~~~~~g~~~---~~l~~~f~~a~~~~P~Ii~iDEiD~l~~ 150 (317)
|.+|||++|+|||+ |+++++ +..++++++.++...+..... ..+.++.+.. ..+.+|+|||++.+..
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~~ 220 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLSY 220 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccccC
Confidence 67899999999998 777743 578899999988776543221 1222222222 2457999999998854
Q ss_pred cccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC-CCC---CCccccCCCcce-
Q psy7780 151 KRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR-IET---LDPALIRPGRID- 225 (317)
Q Consensus 151 ~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~-~~~---Ld~al~rpgRf~- 225 (317)
+. ..+..+..+++.+..- +.. +|.|+|. |.. +++.|.+ ||.
T Consensus 221 k~---------~~~e~lf~l~N~~~~~----------------------~k~-iIltsd~~P~~l~~l~~rL~S--R~~~ 266 (450)
T PRK14087 221 KE---------KTNEIFFTIFNNFIEN----------------------DKQ-LFFSSDKSPELLNGFDNRLIT--RFNM 266 (450)
T ss_pred CH---------HHHHHHHHHHHHHHHc----------------------CCc-EEEECCCCHHHHhhccHHHHH--HHhC
Confidence 32 1233344444443221 222 5666655 433 5788988 985
Q ss_pred -eEEEeCCCCHHHHHHHHHHHhcCCCC---CcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc-CCCcCHHHHHHHH
Q psy7780 226 -RKIEFPLPDEKTKRRIFNIHTSRMTL---AEDVNLQELIMAKDDLSGADIKAICTEAGLMALRER-RMKVTNEDFKKSK 300 (317)
Q Consensus 226 -~~I~~~~P~~~~r~~Il~~~l~~~~~---~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~-~~~it~~d~~~al 300 (317)
..+.+.+|+.++|.+|++..++..++ -++..+..|+..+.| +++.+..+|++....+.... ...|+.+.+.+++
T Consensus 267 Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l 345 (450)
T PRK14087 267 GLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLF 345 (450)
T ss_pred CceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHH
Confidence 67789999999999999999876442 123345667777766 89999999998876666542 3679999999988
Q ss_pred HHHH
Q psy7780 301 ESVL 304 (317)
Q Consensus 301 ~~v~ 304 (317)
+.+.
T Consensus 346 ~~~~ 349 (450)
T PRK14087 346 RDIP 349 (450)
T ss_pred hhcc
Confidence 8764
No 107
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.38 E-value=2.5e-12 Score=123.31 Aligned_cols=190 Identities=20% Similarity=0.313 Sum_probs=122.8
Q ss_pred hhHHHhhhcCCCchh---hhhhcCCceEEEEechhhhh-hhcCCc-hHHHHHHHHHH----HhhCCceEeeccccccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ-KYLGDG-PKLVRELFRVA----EEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~-~~~g~~-~~~l~~~f~~a----~~~~P~Ii~iDEiD~l~~~ 151 (317)
+++||.||||||||+ ++|..++.+|..++++.+.. .|+|+. +..+..++..+ ....|+||||||+|.+.++
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~ 196 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRK 196 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchh
Confidence 479999999999999 99999999999999988753 588875 44555555432 2345789999999999886
Q ss_pred ccCCCCC---chhHHHHHHHHHHHHhcCCCcc---cccccchhhhcccccccCCCCeEEEEEcCCC--------------
Q psy7780 152 RYDSNSG---GEREIQRTMLELLNQLDGFDSR---VQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-------------- 211 (317)
Q Consensus 152 r~~~~~~---~~~~~~~~l~~ll~~ld~~~~~---~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-------------- 211 (317)
+.+...+ ....+++.|+++| +|.... ..+...+ ..+.++|+|+|-.
T Consensus 197 ~~~~s~~~dvsg~~vq~~LL~iL---eG~~~~v~~~~gr~~~-----------~~~~i~i~TsNilfi~~Gaf~g~~~i~ 262 (413)
T TIGR00382 197 SENPSITRDVSGEGVQQALLKII---EGTVANVPPQGGRKHP-----------YQEFIQIDTSNILFICGGAFVGLEKII 262 (413)
T ss_pred hccccccccccchhHHHHHHHHh---hccceecccCCCcccc-----------CCCeEEEEcCCceeeecccccChHHHH
Confidence 5322111 1124566666655 443211 0011100 0345556665540
Q ss_pred -------------C-----------------------CCCccccCCCcceeEEEeCCCCHHHHHHHHHHH----hcC---
Q psy7780 212 -------------E-----------------------TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIH----TSR--- 248 (317)
Q Consensus 212 -------------~-----------------------~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~----l~~--- 248 (317)
+ .+.|+++. |++.++.|.+.+.++..+|+... +++
T Consensus 263 ~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg--Rld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~ 340 (413)
T TIGR00382 263 KKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG--RLPVIATLEKLDEEALIAILTKPKNALVKQYQA 340 (413)
T ss_pred HHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC--CCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 14577777 99999999999999999998652 221
Q ss_pred ------CCCC-cCCCHHHHHHh--CCCCCHHHHHHHHHHHHHHHHHh
Q psy7780 249 ------MTLA-EDVNLQELIMA--KDDLSGADIKAICTEAGLMALRE 286 (317)
Q Consensus 249 ------~~~~-~~~~~~~ia~~--t~g~s~~dl~~l~~~A~~~a~~~ 286 (317)
..+. ++..++.|++. ...+-.+-|+.++++..+.+..+
T Consensus 341 ~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e 387 (413)
T TIGR00382 341 LFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFD 387 (413)
T ss_pred HhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhh
Confidence 1111 22335667765 34566888999988877655543
No 108
>PRK08727 hypothetical protein; Validated
Probab=99.38 E-value=4.9e-12 Score=113.19 Aligned_cols=174 Identities=16% Similarity=0.237 Sum_probs=110.9
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~ 155 (317)
+.+++|++|||||+ |++++ .+....+++..++.. .+.++++... +..+|+|||++.+....
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~--- 109 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQR--- 109 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCCh---
Confidence 46899999999998 65444 356667777655432 2334444443 34699999999886443
Q ss_pred CCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcC-CCCCC---CccccCCCcc--eeEEE
Q psy7780 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATN-RIETL---DPALIRPGRI--DRKIE 229 (317)
Q Consensus 156 ~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN-~~~~L---d~al~rpgRf--~~~I~ 229 (317)
+.+..+..+++.+.. .+..+|+|+| .|..+ +++|++ || ...+.
T Consensus 110 ------~~~~~lf~l~n~~~~-----------------------~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~ 158 (233)
T PRK08727 110 ------EDEVALFDFHNRARA-----------------------AGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIG 158 (233)
T ss_pred ------HHHHHHHHHHHHHHH-----------------------cCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEE
Confidence 112334445544321 1233666665 46655 789999 97 46889
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q psy7780 230 FPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKE 301 (317)
Q Consensus 230 ~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~ 301 (317)
+++|+.+++.+|++.+....++. ++..+..+++.+.| +.+.+.++++.....+...+ ..||.+.+.+.+.
T Consensus 159 l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~~-~~it~~~~~~~l~ 229 (233)
T PRK08727 159 LPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAAK-RRVTVPFLRRVLE 229 (233)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHh
Confidence 99999999999999865433332 33346677777664 44555555665544344444 4799999887764
No 109
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.37 E-value=4.4e-13 Score=124.19 Aligned_cols=176 Identities=13% Similarity=0.141 Sum_probs=112.9
Q ss_pred hhhHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh--hcCCchHH----------HHHHHHHHHhhCCceEeecc
Q psy7780 80 VGSELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK--YLGDGPKL----------VRELFRVAEEHAPSIVFIDE 144 (317)
Q Consensus 80 ~g~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~--~~g~~~~~----------l~~~f~~a~~~~P~Ii~iDE 144 (317)
++++|+.|+||||||+ ++|.+++.++++|+++.-+.. .+|...-. ....+..|.+ .++++++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 3489999999999999 999999999999998765544 44542111 1112334443 358999999
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccc-cccCC-CCeEEEEEcCCCC----------
Q psy7780 145 IDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLT-LIYLP-GDVKVIMATNRIE---------- 212 (317)
Q Consensus 145 iD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~-~~~~~-~~v~vI~tTN~~~---------- 212 (317)
+|..-+ +++..|..+|+. .+. .+.... ....+ ..+.||+|+|..+
T Consensus 143 in~a~p-----------~~~~~L~~lLE~-~~~-----------l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~G 199 (327)
T TIGR01650 143 YDAGRP-----------DVMFVIQRVLEA-GGK-----------LTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHG 199 (327)
T ss_pred hhccCH-----------HHHHHHHHHhcc-CCe-----------EEECCCceEecCCCCeEEEEeeCCCCcCCCCcceee
Confidence 997632 245556666653 110 011000 11112 4689999999865
Q ss_pred --CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCc-CC---CHHHHHHh----------CCCCCHHHHHHHH
Q psy7780 213 --TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAE-DV---NLQELIMA----------KDDLSGADIKAIC 276 (317)
Q Consensus 213 --~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~-~~---~~~~ia~~----------t~g~s~~dl~~l~ 276 (317)
.+++|++. ||-.++.+++|+.++-.+|+........... +. .+-++|.. ..++|+|.+....
T Consensus 200 t~~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~w~ 277 (327)
T TIGR01650 200 TQQINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVITWA 277 (327)
T ss_pred eecCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHHHH
Confidence 27899999 9988899999999999999987654332100 00 01222222 2457888888777
Q ss_pred HHHHH
Q psy7780 277 TEAGL 281 (317)
Q Consensus 277 ~~A~~ 281 (317)
+.+.+
T Consensus 278 ~~~~~ 282 (327)
T TIGR01650 278 ENAEI 282 (327)
T ss_pred HHHHh
Confidence 66543
No 110
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=2.3e-12 Score=122.84 Aligned_cols=170 Identities=15% Similarity=0.176 Sum_probs=111.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce------------EEEEechhhhhhhcCCchHHHHHHHHHHHhh----CCceEee
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT------------FLRVVGSELIQKYLGDGPKLVRELFRVAEEH----APSIVFI 142 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~------------~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~----~P~Ii~i 142 (317)
++|||||||+|||+ ++|+++.++ ++.++.. ...+...++.+++.+... .+.||+|
T Consensus 41 ~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~i~~l~~~~~~~p~~~~~kiviI 114 (367)
T PRK14970 41 ALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAA------SNNSVDDIRNLIDQVRIPPQTGKYKIYII 114 (367)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccc------cCCCHHHHHHHHHHHhhccccCCcEEEEE
Confidence 57899999999999 777776442 2222221 112346777888776532 2469999
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCC
Q psy7780 143 DEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPG 222 (317)
Q Consensus 143 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpg 222 (317)
||+|.+... .+..++..++... ...++|++|+.+..+.+++.+
T Consensus 115 DE~~~l~~~--------------~~~~ll~~le~~~---------------------~~~~~Il~~~~~~kl~~~l~s-- 157 (367)
T PRK14970 115 DEVHMLSSA--------------AFNAFLKTLEEPP---------------------AHAIFILATTEKHKIIPTILS-- 157 (367)
T ss_pred eChhhcCHH--------------HHHHHHHHHhCCC---------------------CceEEEEEeCCcccCCHHHHh--
Confidence 999977421 2344555444321 445677777788899999998
Q ss_pred cceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q psy7780 223 RIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSK 300 (317)
Q Consensus 223 Rf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al 300 (317)
|+. .++|+.|+.++...++.....+.++. ++..+..++..+.| +.+.+.+.++.....+ +.. |+.+++.+.+
T Consensus 158 r~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~y~---~~~-it~~~v~~~~ 230 (367)
T PRK14970 158 RCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVTFC---GKN-ITRQAVTENL 230 (367)
T ss_pred cce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHhc---CCC-CCHHHHHHHh
Confidence 885 68999999999999998877665543 33456667776654 6666666666554433 222 6766666553
No 111
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.37 E-value=7.2e-12 Score=111.44 Aligned_cols=170 Identities=13% Similarity=0.139 Sum_probs=112.7
Q ss_pred hhHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccC
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYD 154 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~ 154 (317)
.+.+|+|+||||||+ ++++++ +..++.+++.++... +.. .....+|+|||+|.+...
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~------------~~~--~~~~~~liiDdi~~l~~~--- 105 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA------------FDF--DPEAELYAVDDVERLDDA--- 105 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH------------Hhh--cccCCEEEEeChhhcCch---
Confidence 378899999999998 676654 668888888775432 111 123579999999987321
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC---CCCccccCCCcc--eeEEE
Q psy7780 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE---TLDPALIRPGRI--DRKIE 229 (317)
Q Consensus 155 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~---~Ld~al~rpgRf--~~~I~ 229 (317)
.+..+..+++.+.. . +..++|.+++.+. .+.+.+.+ || ...++
T Consensus 106 --------~~~~L~~~~~~~~~---~-------------------~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~ 153 (227)
T PRK08903 106 --------QQIALFNLFNRVRA---H-------------------GQGALLVAGPAAPLALPLREDLRT--RLGWGLVYE 153 (227)
T ss_pred --------HHHHHHHHHHHHHH---c-------------------CCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEE
Confidence 13344455544322 1 3333455554322 35577777 87 46999
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q psy7780 230 FPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKE 301 (317)
Q Consensus 230 ~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~ 301 (317)
+|+|+.+++..+++.+..+.++. ++..+..+++...| +.+++.++++.-...|...+ ..||...+.+++.
T Consensus 154 l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 154 LKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSLEQK-RPVTLPLLREMLA 224 (227)
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHh
Confidence 99999999999998876554433 23345667776555 88899889887554554444 6899999988764
No 112
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=2.6e-12 Score=128.86 Aligned_cols=169 Identities=18% Similarity=0.192 Sum_probs=114.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce------------------------EEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT------------------------FLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~------------------------~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||||+|||+ ++|+.+.+. ++++++.+ ..+...++++.+.+..
T Consensus 40 ayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~ 113 (576)
T PRK14965 40 AFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKY 113 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHh
Confidence 46899999999999 777776542 44444322 1234567777776643
Q ss_pred hC----CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 HA----PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ~~----P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
.. ..|++|||+|.+... ..+.|+..|+... .++++|++||.
T Consensus 114 ~p~~~~~KVvIIdev~~Lt~~--------------a~naLLk~LEepp---------------------~~~~fIl~t~~ 158 (576)
T PRK14965 114 LPSRSRYKIFIIDEVHMLSTN--------------AFNALLKTLEEPP---------------------PHVKFIFATTE 158 (576)
T ss_pred ccccCCceEEEEEChhhCCHH--------------HHHHHHHHHHcCC---------------------CCeEEEEEeCC
Confidence 21 249999999988421 2334444444322 56888899999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
++.|.+.+++ |+. .+.|..++.++....++..+++.++. ++..+..+++.+.| +.+++.+++..+..++ ..
T Consensus 159 ~~kl~~tI~S--Rc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr~al~~Ldqliay~----g~ 230 (576)
T PRK14965 159 PHKVPITILS--RCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMRDSLSTLDQVLAFC----GD 230 (576)
T ss_pred hhhhhHHHHH--hhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc----cC
Confidence 9999999999 985 88999999999888888877665543 33346667777776 6777777777554443 13
Q ss_pred CcCHHHHHHH
Q psy7780 290 KVTNEDFKKS 299 (317)
Q Consensus 290 ~it~~d~~~a 299 (317)
.|+.+|+...
T Consensus 231 ~It~edV~~l 240 (576)
T PRK14965 231 AVGDDDVAEL 240 (576)
T ss_pred CCCHHHHHHH
Confidence 4777766544
No 113
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.2e-11 Score=117.25 Aligned_cols=187 Identities=22% Similarity=0.286 Sum_probs=127.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCce-----EEEEechhhh----------hhh-----cCCc-hHHHHHHHHHHHh-hCC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSAT-----FLRVVGSELI----------QKY-----LGDG-PKLVRELFRVAEE-HAP 137 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~-----~~~v~~s~l~----------~~~-----~g~~-~~~l~~~f~~a~~-~~P 137 (317)
.++||+||||||. .+++++.-. +++|||...- ++. .|.+ ...+..+++.... ...
T Consensus 45 ~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~ 124 (366)
T COG1474 45 IIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKT 124 (366)
T ss_pred EEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCe
Confidence 5689999999998 666665433 8999995532 211 1222 2223333333333 345
Q ss_pred ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC---CC
Q psy7780 138 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE---TL 214 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~---~L 214 (317)
.||++||+|.|..+.+ .+|..|+...+.. . .+|.+|+.+|..+ .+
T Consensus 125 ~IvvLDEid~L~~~~~-----------~~LY~L~r~~~~~--~-------------------~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 125 VIVILDEVDALVDKDG-----------EVLYSLLRAPGEN--K-------------------VKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred EEEEEcchhhhccccc-----------hHHHHHHhhcccc--c-------------------eeEEEEEEeccHHHHHHh
Confidence 7899999999987651 4666666654443 1 5688999999864 68
Q ss_pred CccccCCCcc-eeEEEeCCCCHHHHHHHHHHHhcCC-C--CCcCCCHHHHH---HhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy7780 215 DPALIRPGRI-DRKIEFPLPDEKTKRRIFNIHTSRM-T--LAEDVNLQELI---MAKDDLSGADIKAICTEAGLMALRER 287 (317)
Q Consensus 215 d~al~rpgRf-~~~I~~~~P~~~~r~~Il~~~l~~~-~--~~~~~~~~~ia---~~t~g~s~~dl~~l~~~A~~~a~~~~ 287 (317)
||.+.+ +| ...|.||+++.+|..+|++...... . .-.+.-++-+| ....| ..+-...+|+.|+..|.+++
T Consensus 173 d~rv~s--~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aidilr~A~eiAe~~~ 249 (366)
T COG1474 173 DPRVKS--SLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKAIDILRRAGEIAEREG 249 (366)
T ss_pred hhhhhh--ccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHhhC
Confidence 899988 66 4569999999999999999887532 1 11122222233 33344 45555688999999999999
Q ss_pred CCCcCHHHHHHHHHHHH
Q psy7780 288 RMKVTNEDFKKSKESVL 304 (317)
Q Consensus 288 ~~~it~~d~~~al~~v~ 304 (317)
...++.+++.+|.+.+-
T Consensus 250 ~~~v~~~~v~~a~~~~~ 266 (366)
T COG1474 250 SRKVSEDHVREAQEEIE 266 (366)
T ss_pred CCCcCHHHHHHHHHHhh
Confidence 99999999999955544
No 114
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.36 E-value=3.2e-12 Score=132.11 Aligned_cols=168 Identities=21% Similarity=0.121 Sum_probs=108.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce--------------------------EEEEechhhhhhhcCCchHHHHHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT--------------------------FLRVVGSELIQKYLGDGPKLVRELFRVA 132 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~--------------------------~~~v~~s~l~~~~~g~~~~~l~~~f~~a 132 (317)
.+||+||+|||||+ ++|+.+.|. |+.+++.+. .+-..+|++-+.+
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~ 112 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERA 112 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHH
Confidence 47999999999999 788877652 333333211 1233455544433
Q ss_pred H----hhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEc
Q psy7780 133 E----EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMAT 208 (317)
Q Consensus 133 ~----~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tT 208 (317)
. .....|++|||+|.+... ..+ .||..|+... .++++|++|
T Consensus 113 ~~~p~~~~~KV~IIDEad~lt~~-----------a~N---aLLK~LEEpP---------------------~~~~fIl~t 157 (824)
T PRK07764 113 FFAPAESRYKIFIIDEAHMVTPQ-----------GFN---ALLKIVEEPP---------------------EHLKFIFAT 157 (824)
T ss_pred HhchhcCCceEEEEechhhcCHH-----------HHH---HHHHHHhCCC---------------------CCeEEEEEe
Confidence 2 233469999999998431 233 4444444332 567888888
Q ss_pred CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy7780 209 NRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRER 287 (317)
Q Consensus 209 N~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~ 287 (317)
+.++.|.+.|++ |+. .+.|..++.++..++|+..+++.++. .+..+..++..+.| +.+++.+++......+ +
T Consensus 158 t~~~kLl~TIrS--Rc~-~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR~Al~eLEKLia~~---~ 230 (824)
T PRK07764 158 TEPDKVIGTIRS--RTH-HYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVRDSLSVLDQLLAGA---G 230 (824)
T ss_pred CChhhhhHHHHh--hee-EEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhhc---C
Confidence 999999999999 984 88999999999999998887665543 22234556666655 7777777776544221 2
Q ss_pred CCCcCHHHHH
Q psy7780 288 RMKVTNEDFK 297 (317)
Q Consensus 288 ~~~it~~d~~ 297 (317)
...||.+++.
T Consensus 231 ~~~IT~e~V~ 240 (824)
T PRK07764 231 PEGVTYERAV 240 (824)
T ss_pred CCCCCHHHHH
Confidence 3345555443
No 115
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=8.8e-12 Score=122.51 Aligned_cols=170 Identities=16% Similarity=0.217 Sum_probs=112.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||||+|||+ ++|..+++ .++.+++++ ..+...++.+.+.+..
T Consensus 40 ayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~ 113 (486)
T PRK14953 40 AYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSY 113 (486)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHh
Confidence 46899999999998 77776653 122222211 1223446666665543
Q ss_pred h----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 H----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
. .+.|++|||+|.+... .++.|+..++... ..+++|.+|+.
T Consensus 114 ~P~~~~~KVvIIDEad~Lt~~--------------a~naLLk~LEepp---------------------~~~v~Il~tt~ 158 (486)
T PRK14953 114 TPIKGKYKVYIIDEAHMLTKE--------------AFNALLKTLEEPP---------------------PRTIFILCTTE 158 (486)
T ss_pred CcccCCeeEEEEEChhhcCHH--------------HHHHHHHHHhcCC---------------------CCeEEEEEECC
Confidence 2 2469999999977421 2234444444322 45667777788
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
++.+++++++ |+. .+.|++|+.++...+++..+++.++. ++..+..++..+.| +.+++.++++.+...+ ..
T Consensus 159 ~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~al~~Ldkl~~~~----~~ 230 (486)
T PRK14953 159 YDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRDAASLLDQASTYG----EG 230 (486)
T ss_pred HHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhc----CC
Confidence 8899999998 885 79999999999999999988766554 22335666766665 6777778887765442 34
Q ss_pred CcCHHHHHHHH
Q psy7780 290 KVTNEDFKKSK 300 (317)
Q Consensus 290 ~it~~d~~~al 300 (317)
.+|.+++.+++
T Consensus 231 ~It~~~V~~~l 241 (486)
T PRK14953 231 KVTIKVVEEFL 241 (486)
T ss_pred CcCHHHHHHHh
Confidence 57777776643
No 116
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=4e-12 Score=126.89 Aligned_cols=169 Identities=20% Similarity=0.143 Sum_probs=110.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCc--------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHH
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSA--------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAE 133 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~--------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~ 133 (317)
+||+||+|||||+ ++|+.+.+ .++.+++++- .+-..++++-+.+.
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~ 111 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAF 111 (584)
T ss_pred EEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHH
Confidence 6899999999999 77777654 2334443221 12345565555443
Q ss_pred h----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcC
Q psy7780 134 E----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATN 209 (317)
Q Consensus 134 ~----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN 209 (317)
. ...-|++|||+|.+... ..+.||..|+... .++++|++|+
T Consensus 112 ~~P~~~~~KVvIIDEah~Lt~~--------------A~NALLK~LEEpp---------------------~~~~fIL~tt 156 (584)
T PRK14952 112 YAPAQSRYRIFIVDEAHMVTTA--------------GFNALLKIVEEPP---------------------EHLIFIFATT 156 (584)
T ss_pred hhhhcCCceEEEEECCCcCCHH--------------HHHHHHHHHhcCC---------------------CCeEEEEEeC
Confidence 2 12359999999988421 2334455444332 5688888889
Q ss_pred CCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy7780 210 RIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERR 288 (317)
Q Consensus 210 ~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~ 288 (317)
.++.|.++|++ |+ ..++|..++.++..+.++..+.+.+.. ++..+..++..+.| +.+++.+++......+ +.
T Consensus 157 e~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G-dlR~aln~Ldql~~~~---~~ 229 (584)
T PRK14952 157 EPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG-SPRDTLSVLDQLLAGA---AD 229 (584)
T ss_pred ChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcc---CC
Confidence 99999999999 87 489999999999998998887765543 22234455555444 7888888888654432 13
Q ss_pred CCcCHHHHHHH
Q psy7780 289 MKVTNEDFKKS 299 (317)
Q Consensus 289 ~~it~~d~~~a 299 (317)
..||.+++...
T Consensus 230 ~~It~~~v~~l 240 (584)
T PRK14952 230 THVTYQRALGL 240 (584)
T ss_pred CCcCHHHHHHH
Confidence 44666555443
No 117
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=3.8e-12 Score=126.49 Aligned_cols=168 Identities=16% Similarity=0.219 Sum_probs=111.7
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
++||+||||+|||+ ++|+.+.+ .++.+++++ ..+-..+|.+.+.+..
T Consensus 40 A~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~~~~~ 113 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAAS------NNGVDEIRNIIDNINY 113 (605)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHHHHHh
Confidence 47899999999999 77776643 334444322 1233457777776654
Q ss_pred hC----CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 HA----PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ~~----P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
.. ..|++|||+|.+... ....|...|++ .. +.+++|++|+.
T Consensus 114 ~P~~~~~KVIIIDEad~Lt~~-----------A~NaLLKtLEE---Pp---------------------~~tvfIL~Tt~ 158 (605)
T PRK05896 114 LPTTFKYKVYIIDEAHMLSTS-----------AWNALLKTLEE---PP---------------------KHVVFIFATTE 158 (605)
T ss_pred chhhCCcEEEEEechHhCCHH-----------HHHHHHHHHHh---CC---------------------CcEEEEEECCC
Confidence 32 249999999987321 22334444443 21 56778888888
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
+..|.+++++ |+. .++|++|+.++....++..+.+.+.. ++..+..++..+.| +.+++.++++.+.... + .
T Consensus 159 ~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR~AlnlLekL~~y~---~-~ 230 (605)
T PRK05896 159 FQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLRDGLSILDQLSTFK---N-S 230 (605)
T ss_pred hHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHhhc---C-C
Confidence 9999999999 986 79999999999999998877654432 23346667777766 6777777777643332 2 2
Q ss_pred CcCHHHHHH
Q psy7780 290 KVTNEDFKK 298 (317)
Q Consensus 290 ~it~~d~~~ 298 (317)
.|+.+++.+
T Consensus 231 ~It~e~V~e 239 (605)
T PRK05896 231 EIDIEDINK 239 (605)
T ss_pred CCCHHHHHH
Confidence 267666555
No 118
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.34 E-value=8.2e-12 Score=116.22 Aligned_cols=169 Identities=17% Similarity=0.224 Sum_probs=107.2
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEechhhhhhhcCCchHHHHHHHH-HHHh-----hCCceEeeccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVVGSELIQKYLGDGPKLVRELFR-VAEE-----HAPSIVFIDEIDA 147 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s~l~~~~~g~~~~~l~~~f~-~a~~-----~~P~Ii~iDEiD~ 147 (317)
+.+|+|+||||||+ ++++++ ...++.+++++-. ....++..+. .+.. ..+.+|+|||+|.
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~ 113 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADN 113 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCccc
Confidence 46899999999999 777765 3356666554321 1122222222 2221 1245999999998
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeE
Q psy7780 148 VGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRK 227 (317)
Q Consensus 148 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~ 227 (317)
+... .+..+..++ +... ....+|.++|.+..+.+++.+ |+. .
T Consensus 114 l~~~-----------~~~~L~~~l---e~~~---------------------~~~~lIl~~~~~~~l~~~l~s--r~~-~ 155 (319)
T PRK00440 114 LTSD-----------AQQALRRTM---EMYS---------------------QNTRFILSCNYSSKIIDPIQS--RCA-V 155 (319)
T ss_pred CCHH-----------HHHHHHHHH---hcCC---------------------CCCeEEEEeCCccccchhHHH--Hhh-e
Confidence 8421 123333333 3222 334577778888888888988 886 6
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q psy7780 228 IEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSK 300 (317)
Q Consensus 228 I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al 300 (317)
++|++|+.++...+++.++++.+.. ++..+..++..+.| +.+.+.+.++.++.. ...||.+++..++
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~~~-----~~~it~~~v~~~~ 223 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAAAT-----GKEVTEEAVYKIT 223 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHc-----CCCCCHHHHHHHh
Confidence 8999999999999999988765543 33456777777655 555555555544332 3567888776665
No 119
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=1e-11 Score=122.43 Aligned_cols=178 Identities=19% Similarity=0.236 Sum_probs=118.3
Q ss_pred CCCceEeechh-------------------hHHHhhhcCCCchh---hhhhcCCc------------------------e
Q psy7780 71 QTSATFLRVVG-------------------SELIQKYLGDGPKL---AVANQTSA------------------------T 104 (317)
Q Consensus 71 ~~~~~~~~i~g-------------------~~Ll~G~pGtGKT~---aiA~~~~~------------------------~ 104 (317)
.++.+|+++.| .+||+||||+|||+ ++|+.+.+ .
T Consensus 8 yRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d 87 (535)
T PRK08451 8 YRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID 87 (535)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe
Confidence 35667777777 35899999999999 66666532 2
Q ss_pred EEEEechhhhhhhcCCchHHHHHHHHHHHhhCC-----ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCc
Q psy7780 105 FLRVVGSELIQKYLGDGPKLVRELFRVAEEHAP-----SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDS 179 (317)
Q Consensus 105 ~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P-----~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~ 179 (317)
++.+++++- .+-..++++.+.+.. .| -|++|||+|.+.. +.+..| |..++...
T Consensus 88 v~eldaas~------~gId~IRelie~~~~-~P~~~~~KVvIIDEad~Lt~-----------~A~NAL---LK~LEEpp- 145 (535)
T PRK08451 88 IIEMDAASN------RGIDDIRELIEQTKY-KPSMARFKIFIIDEVHMLTK-----------EAFNAL---LKTLEEPP- 145 (535)
T ss_pred EEEeccccc------cCHHHHHHHHHHHhh-CcccCCeEEEEEECcccCCH-----------HHHHHH---HHHHhhcC-
Confidence 444443220 123456666654432 22 4999999988832 123344 44444322
Q ss_pred ccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHH
Q psy7780 180 RVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQ 258 (317)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~ 258 (317)
..+.+|.+|+.+..|.+++++ |+. .++|.+++.++....++..+++.+.. ++..+.
T Consensus 146 --------------------~~t~FIL~ttd~~kL~~tI~S--Rc~-~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~ 202 (535)
T PRK08451 146 --------------------SYVKFILATTDPLKLPATILS--RTQ-HFRFKQIPQNSIISHLKTILEKEGVSYEPEALE 202 (535)
T ss_pred --------------------CceEEEEEECChhhCchHHHh--hce-eEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 557788888889999999999 984 89999999999998888877665443 234466
Q ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHH
Q psy7780 259 ELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKK 298 (317)
Q Consensus 259 ~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~ 298 (317)
.++..+.| +.+++.+++..|...+ ...||.+++.+
T Consensus 203 ~Ia~~s~G-dlR~alnlLdqai~~~----~~~It~~~V~~ 237 (535)
T PRK08451 203 ILARSGNG-SLRDTLTLLDQAIIYC----KNAITESKVAD 237 (535)
T ss_pred HHHHHcCC-cHHHHHHHHHHHHHhc----CCCCCHHHHHH
Confidence 77777666 8888888888776554 23455555543
No 120
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.34 E-value=6.1e-12 Score=129.15 Aligned_cols=177 Identities=16% Similarity=0.226 Sum_probs=112.3
Q ss_pred hhHHHhhhcCCCchh---hhhhcCCceEEEEechhhhh-----hhcCCchHH-----HHHHHHHHHhhCCceEeeccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ-----KYLGDGPKL-----VRELFRVAEEHAPSIVFIDEIDA 147 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~-----~~~g~~~~~-----l~~~f~~a~~~~P~Ii~iDEiD~ 147 (317)
|+.||.||||||||. ++|..++.+|+.+++++... +.+|..+.. -..+.+..+++..|||||||+|.
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEiek 568 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEK 568 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhh
Confidence 367999999999999 89999999999999988643 333322111 11233334455569999999998
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC----------------
Q psy7780 148 VGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI---------------- 211 (317)
Q Consensus 148 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~---------------- 211 (317)
+.+ ++++.|.++++. |.-....+.. ..-.++++|+|||.-
T Consensus 569 a~~-----------~v~~~LLq~ld~--G~ltd~~g~~-----------vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~ 624 (758)
T PRK11034 569 AHP-----------DVFNLLLQVMDN--GTLTDNNGRK-----------ADFRNVVLVMTTNAGVRETERKSIGLIHQDN 624 (758)
T ss_pred hhH-----------HHHHHHHHHHhc--CeeecCCCce-----------ecCCCcEEEEeCCcCHHHHhhcccCcccchh
Confidence 842 355666666542 2111100000 011578899999932
Q ss_pred ---------CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC-------CCC---cCCCHHHHHHhC--CCCCHH
Q psy7780 212 ---------ETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM-------TLA---EDVNLQELIMAK--DDLSGA 270 (317)
Q Consensus 212 ---------~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~-------~~~---~~~~~~~ia~~t--~g~s~~ 270 (317)
..+.|.++. |+|.+|.|++++.++..+|+..++.+. ++. ++..++.++... ..+-.+
T Consensus 625 ~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR 702 (758)
T PRK11034 625 STDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGAR 702 (758)
T ss_pred hHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCc
Confidence 126688888 999999999999999999998776532 121 122234455432 234566
Q ss_pred HHHHHHHHHHHHH
Q psy7780 271 DIKAICTEAGLMA 283 (317)
Q Consensus 271 dl~~l~~~A~~~a 283 (317)
.|+.+++.-....
T Consensus 703 ~l~r~i~~~l~~~ 715 (758)
T PRK11034 703 PMARVIQDNLKKP 715 (758)
T ss_pred hHHHHHHHHHHHH
Confidence 7777776554433
No 121
>PRK05642 DNA replication initiation factor; Validated
Probab=99.32 E-value=1.4e-11 Score=110.26 Aligned_cols=175 Identities=18% Similarity=0.192 Sum_probs=113.1
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~ 155 (317)
+.+++|++|||||. ++|+++ +..+++++..++.... ..+.+..+.. .+|+|||++.+..+.
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~~--d~LiiDDi~~~~~~~--- 113 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQY--ELVCLDDLDVIAGKA--- 113 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhhC--CEEEEechhhhcCCh---
Confidence 56799999999998 666543 6778889888876531 2233333332 589999999885442
Q ss_pred CCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC---CCccccCCCcce--eEEEe
Q psy7780 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET---LDPALIRPGRID--RKIEF 230 (317)
Q Consensus 156 ~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~---Ld~al~rpgRf~--~~I~~ 230 (317)
..+..+..+++.+ ... +..++|+++..|.. +.|.|++ ||. ..+.+
T Consensus 114 ------~~~~~Lf~l~n~~---~~~-------------------g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l 163 (234)
T PRK05642 114 ------DWEEALFHLFNRL---RDS-------------------GRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQM 163 (234)
T ss_pred ------HHHHHHHHHHHHH---Hhc-------------------CCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeec
Confidence 1123344444332 111 45566666655544 3689999 984 67788
Q ss_pred CCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q psy7780 231 PLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKE 301 (317)
Q Consensus 231 ~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~ 301 (317)
..|+.++|..+++......++. ++..++.++++.++ +.+.+..+++.--..++..+ ..||..-+.+++.
T Consensus 164 ~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~l~~~-~~it~~~~~~~L~ 233 (234)
T PRK05642 164 RGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQASLQAQ-RKLTIPFLKETLG 233 (234)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcC-CcCCHHHHHHHhc
Confidence 9999999999999654433332 23335666766655 78888888776554444433 5588888877653
No 122
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=1.5e-11 Score=122.77 Aligned_cols=169 Identities=15% Similarity=0.172 Sum_probs=113.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce------------------------EEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT------------------------FLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~------------------------~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||||+|||+ ++|+.+.+. ++.+++.+ ..+-..++++.+.+..
T Consensus 40 ayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~ 113 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMF 113 (563)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHh
Confidence 47999999999999 888877642 23332211 0123456665554432
Q ss_pred ----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 ----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
....|++|||+|.+.. ..++.||..++... ..+++|++|+.
T Consensus 114 ~p~~~~~KVvIIDEa~~Ls~--------------~a~naLLK~LEepp---------------------~~~vfI~~tte 158 (563)
T PRK06647 114 PPASSRYRVYIIDEVHMLSN--------------SAFNALLKTIEEPP---------------------PYIVFIFATTE 158 (563)
T ss_pred chhcCCCEEEEEEChhhcCH--------------HHHHHHHHhhccCC---------------------CCEEEEEecCC
Confidence 2346999999998832 23445555555322 56788888888
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
++.|.++|++ |+. .++|.+++.++..++++..+...++. ++..+..+++.+.| +.+++.+++..+...+ ..
T Consensus 159 ~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~alslLdklis~~----~~ 230 (563)
T PRK06647 159 VHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDAYTLFDQVVSFS----DS 230 (563)
T ss_pred hHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhhc----CC
Confidence 9999999999 986 78999999999999998887654443 23345667777666 7888888887655432 23
Q ss_pred CcCHHHHHHH
Q psy7780 290 KVTNEDFKKS 299 (317)
Q Consensus 290 ~it~~d~~~a 299 (317)
.++.+++.++
T Consensus 231 ~It~e~V~~l 240 (563)
T PRK06647 231 DITLEQIRSK 240 (563)
T ss_pred CCCHHHHHHH
Confidence 4677666554
No 123
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.31 E-value=3e-11 Score=122.08 Aligned_cols=206 Identities=19% Similarity=0.208 Sum_probs=115.0
Q ss_pred hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhh-------hhhcCCchHHH----HHHHHH------
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELI-------QKYLGDGPKLV----RELFRV------ 131 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~-------~~~~g~~~~~l----~~~f~~------ 131 (317)
+.+|+||||||||+ ++++.. +.+|+.++|+.+- ..+.|...... +..+..
T Consensus 177 ~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~ 256 (615)
T TIGR02903 177 HIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEP 256 (615)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCch
Confidence 58899999999999 444333 4579999987651 11222211100 111110
Q ss_pred ----HHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcC-CCc---ccccccchhhhcccccccCCCCeE
Q psy7780 132 ----AEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDG-FDS---RVQNRRLSEVYSSLTLIYLPGDVK 203 (317)
Q Consensus 132 ----a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~-~~~---~~~~~~~~~~~~~~~~~~~~~~v~ 203 (317)
.......+|||||++.+-.. .+..+..+++.-.- +.+ .........+++.......+.+++
T Consensus 257 ~~g~v~~asgGvL~LDEi~~Ld~~-----------~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~V 325 (615)
T TIGR02903 257 KTGLVTDAHGGVLFIDEIGELDPL-----------LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFV 325 (615)
T ss_pred hcCchhhcCCCeEEEeccccCCHH-----------HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEE
Confidence 01223469999999887322 34444445443100 000 000000011111111222334566
Q ss_pred EEEEc-CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy7780 204 VIMAT-NRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGL 281 (317)
Q Consensus 204 vI~tT-N~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~ 281 (317)
+|++| +.++.++++|++ ||. .++|++++.+++..|++..+.+.... ++..+..+++.+. .++...+++..+..
T Consensus 326 LI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~ 400 (615)
T TIGR02903 326 LIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYG 400 (615)
T ss_pred EEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHH
Confidence 66655 668899999999 997 67899999999999999998765432 2222344444432 55665566655554
Q ss_pred HHHHh--------cCCCcCHHHHHHHHHHH
Q psy7780 282 MALRE--------RRMKVTNEDFKKSKESV 303 (317)
Q Consensus 282 ~a~~~--------~~~~it~~d~~~al~~v 303 (317)
.++.+ ....|+.+|+++++..-
T Consensus 401 ~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 401 YALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 43222 22379999999888753
No 124
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.31 E-value=5.8e-12 Score=117.98 Aligned_cols=147 Identities=16% Similarity=0.201 Sum_probs=98.6
Q ss_pred ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-CCCc
Q psy7780 138 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-TLDP 216 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-~Ld~ 216 (317)
.+||+||++.+-+ ..+..|.+.+++ -.-. +..++.+...+.++++|+|+|..+ .+++
T Consensus 130 GiL~lDEInrl~~-----------~~q~~Lle~mee---~~v~--------v~r~G~~~~~p~rfiviAt~NP~e~~l~~ 187 (334)
T PRK13407 130 GYLYIDEVNLLED-----------HIVDLLLDVAQS---GENV--------VEREGLSIRHPARFVLVGSGNPEEGELRP 187 (334)
T ss_pred CeEEecChHhCCH-----------HHHHHHHHHHHc---CCeE--------EEECCeEEecCCCEEEEecCCcccCCCCH
Confidence 5999999998743 235555555543 1100 112233345567899999999755 5999
Q ss_pred cccCCCcceeEEEeCCCCH-HHHHHHHHHHhcCCC----C------CcCCC-----------------------HHHHHH
Q psy7780 217 ALIRPGRIDRKIEFPLPDE-KTKRRIFNIHTSRMT----L------AEDVN-----------------------LQELIM 262 (317)
Q Consensus 217 al~rpgRf~~~I~~~~P~~-~~r~~Il~~~l~~~~----~------~~~~~-----------------------~~~ia~ 262 (317)
+++. ||...+.+++|.. ++|.+|++....... . ..... +.+++.
T Consensus 188 aLld--RF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~ 265 (334)
T PRK13407 188 QLLD--RFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCI 265 (334)
T ss_pred HHHh--hcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHH
Confidence 9999 9999999999976 999999987532110 0 00000 122222
Q ss_pred hCCCC-CHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhcc
Q psy7780 263 AKDDL-SGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKE 309 (317)
Q Consensus 263 ~t~g~-s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~~ 309 (317)
.+.-- .-+++. +++.|...|+.+++..|+.+|+..+..-++.++-.
T Consensus 266 ~~~~~s~Ra~i~-l~~aA~a~A~l~Gr~~V~~~Di~~~~~~vl~hR~~ 312 (334)
T PRK13407 266 ALGSDGLRGELT-LLRAARALAAFEGAEAVGRSHLRSVATMALSHRLR 312 (334)
T ss_pred HHCCCCchHHHH-HHHHHHHHHHHcCCCeeCHHHHHHHHHHhhhhhcc
Confidence 32212 344444 88889999999999999999999999888877754
No 125
>PRK06620 hypothetical protein; Validated
Probab=99.31 E-value=2.1e-11 Score=107.64 Aligned_cols=159 Identities=19% Similarity=0.247 Sum_probs=102.7
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGG 159 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~ 159 (317)
.+||||||||||+ ++|+..+..++. .... ....+ . ...+++|||||.+ .
T Consensus 47 l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~-----------~~~~~----~-~~d~lliDdi~~~---~------- 98 (214)
T PRK06620 47 LLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF-----------NEEIL----E-KYNAFIIEDIENW---Q------- 98 (214)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh-----------chhHH----h-cCCEEEEeccccc---h-------
Confidence 6799999999999 778877764332 1110 01111 1 2369999999943 0
Q ss_pred hhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC--CCccccCCCcce--eEEEeCCCCH
Q psy7780 160 EREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET--LDPALIRPGRID--RKIEFPLPDE 235 (317)
Q Consensus 160 ~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~--Ld~al~rpgRf~--~~I~~~~P~~ 235 (317)
+. .+..+++.+.. . +..++|+++..|.. + |+|++ |+. ..+.+..|+.
T Consensus 99 ~~----~lf~l~N~~~e---~-------------------g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~ 149 (214)
T PRK06620 99 EP----ALLHIFNIINE---K-------------------QKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDD 149 (214)
T ss_pred HH----HHHHHHHHHHh---c-------------------CCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCH
Confidence 11 22333333221 1 56677777766554 6 78998 985 3689999999
Q ss_pred HHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q psy7780 236 KTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSK 300 (317)
Q Consensus 236 ~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al 300 (317)
+.+..+++......++. ++..++.++.+..+ +.+.+.++++.....+... ...||.+.+.+++
T Consensus 150 ~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~~-~~~it~~~~~~~l 213 (214)
T PRK06620 150 ELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENINYFALIS-KRKITISLVKEVL 213 (214)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHc-CCCCCHHHHHHHh
Confidence 99999998887654443 33346667777665 7777777777644334433 3569998888765
No 126
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=1.5e-11 Score=120.08 Aligned_cols=169 Identities=17% Similarity=0.201 Sum_probs=107.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc-------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA-------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAE 133 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~-------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~ 133 (317)
.+||+||||+|||+ ++|+.+.+ .++.+++..- .+-..++.+-+...
T Consensus 41 a~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~~------~gid~ir~i~~~l~ 114 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGASH------RGIEDIRQINETVL 114 (451)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeecccc------CCHHHHHHHHHHHH
Confidence 47899999999999 67666543 2444443211 11234444333332
Q ss_pred ----hhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcC
Q psy7780 134 ----EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATN 209 (317)
Q Consensus 134 ----~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN 209 (317)
.....||+|||+|.+... ..+.|+..++... +.+.+|++||
T Consensus 115 ~~~~~~~~kvvIIdead~lt~~--------------~~n~LLk~lEep~---------------------~~~~~Il~t~ 159 (451)
T PRK06305 115 FTPSKSRYKIYIIDEVHMLTKE--------------AFNSLLKTLEEPP---------------------QHVKFFLATT 159 (451)
T ss_pred hhhhcCCCEEEEEecHHhhCHH--------------HHHHHHHHhhcCC---------------------CCceEEEEeC
Confidence 234579999999988421 2234455544422 5677888888
Q ss_pred CCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy7780 210 RIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERR 288 (317)
Q Consensus 210 ~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~ 288 (317)
.++.|.+++++ |+. .++|+.++.++...+++..+++.+.. ++..+..++..+.| +.+++.+.++..... .+
T Consensus 160 ~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr~a~~~Lekl~~~---~~- 231 (451)
T PRK06305 160 EIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SLRDAESLYDYVVGL---FP- 231 (451)
T ss_pred ChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh---cc-
Confidence 89999999999 985 79999999999999888877654433 23346667777655 566666666544322 11
Q ss_pred CCcCHHHHHHH
Q psy7780 289 MKVTNEDFKKS 299 (317)
Q Consensus 289 ~~it~~d~~~a 299 (317)
..|+.+++.++
T Consensus 232 ~~It~~~V~~l 242 (451)
T PRK06305 232 KSLDPDSVAKA 242 (451)
T ss_pred CCcCHHHHHHH
Confidence 33666665543
No 127
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=8.6e-12 Score=120.11 Aligned_cols=174 Identities=12% Similarity=0.116 Sum_probs=112.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce--------------------------------EEEEechhhhhhhcCCchHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT--------------------------------FLRVVGSELIQKYLGDGPKLVR 126 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~--------------------------------~~~v~~s~l~~~~~g~~~~~l~ 126 (317)
.+||+||||+|||+ ++|+++.+. ++.+++.+ ..+...++
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~------~~~id~Ir 113 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIR 113 (397)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccc------cCCHHHHH
Confidence 47899999999999 788877652 22222211 11234566
Q ss_pred HHHHHHHhh----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCe
Q psy7780 127 ELFRVAEEH----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDV 202 (317)
Q Consensus 127 ~~f~~a~~~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v 202 (317)
++.+.+... ...|++|||+|.+... ....++..++... ...
T Consensus 114 ~l~~~~~~~p~~~~~kvvIIdea~~l~~~--------------~~~~LLk~LEep~---------------------~~t 158 (397)
T PRK14955 114 LLRENVRYGPQKGRYRVYIIDEVHMLSIA--------------AFNAFLKTLEEPP---------------------PHA 158 (397)
T ss_pred HHHHHHhhchhcCCeEEEEEeChhhCCHH--------------HHHHHHHHHhcCC---------------------CCe
Confidence 665555321 1259999999988421 2223444444321 456
Q ss_pred EEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy7780 203 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGL 281 (317)
Q Consensus 203 ~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~ 281 (317)
++|++|+.+..+.+++++ |+. .++|++++.++....++..+++.+.. ++..+..++..+.| +.+.+.+.++.+..
T Consensus 159 ~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g-~lr~a~~~L~kl~~ 234 (397)
T PRK14955 159 IFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQG-SMRDAQSILDQVIA 234 (397)
T ss_pred EEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 677777778889999998 885 79999999999888888877654432 23345667777665 77777777776655
Q ss_pred HHHH-hcCCCcCHHHHHHHH
Q psy7780 282 MALR-ERRMKVTNEDFKKSK 300 (317)
Q Consensus 282 ~a~~-~~~~~it~~d~~~al 300 (317)
++.. .....|+.+++.+.+
T Consensus 235 ~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 235 FSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred hccccCCCCccCHHHHHHHH
Confidence 5432 234578887776544
No 128
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=2.3e-11 Score=122.06 Aligned_cols=177 Identities=17% Similarity=0.152 Sum_probs=118.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEe-------------chhhhhhh----------cCCchHHHHHHHHHHHhh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVV-------------GSELIQKY----------LGDGPKLVRELFRVAEEH 135 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~-------------~s~l~~~~----------~g~~~~~l~~~f~~a~~~ 135 (317)
.+||+||+|+|||+ ++|+.+.+.....+ |..+.... ...+-..||++.+.++..
T Consensus 48 a~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~ 127 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYR 127 (598)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhc
Confidence 57999999999999 88888876422111 11111100 012245688888777533
Q ss_pred C----CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC
Q psy7780 136 A----PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI 211 (317)
Q Consensus 136 ~----P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~ 211 (317)
. ..|++|||+|.+.. ...+.||..|+... .++.+|++|+.+
T Consensus 128 P~~a~~KVvIIDEad~Ls~--------------~a~naLLKtLEePp---------------------~~~~fIl~tte~ 172 (598)
T PRK09111 128 PVSARYKVYIIDEVHMLST--------------AAFNALLKTLEEPP---------------------PHVKFIFATTEI 172 (598)
T ss_pred hhcCCcEEEEEEChHhCCH--------------HHHHHHHHHHHhCC---------------------CCeEEEEEeCCh
Confidence 2 46999999998842 12334444444322 567788888888
Q ss_pred CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCC
Q psy7780 212 ETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMK 290 (317)
Q Consensus 212 ~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~ 290 (317)
+.+.+.+++ |+. .+.|..|+.++...+++..+++.+.. .+..+..++..+.| +.+++.+++..+... +...
T Consensus 173 ~kll~tI~S--Rcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr~al~~Ldkli~~----g~g~ 244 (598)
T PRK09111 173 RKVPVTVLS--RCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVRDGLSLLDQAIAH----GAGE 244 (598)
T ss_pred hhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhh----cCCC
Confidence 889999999 984 89999999999999998887765543 22345566777666 788888888766543 2346
Q ss_pred cCHHHHHHHHH
Q psy7780 291 VTNEDFKKSKE 301 (317)
Q Consensus 291 it~~d~~~al~ 301 (317)
|+.+++...+.
T Consensus 245 It~e~V~~llg 255 (598)
T PRK09111 245 VTAEAVRDMLG 255 (598)
T ss_pred cCHHHHHHHhC
Confidence 88888876553
No 129
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.29 E-value=2.3e-11 Score=115.74 Aligned_cols=210 Identities=19% Similarity=0.261 Sum_probs=137.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhh-hhcC-CchHHHHHHHHHHH-----------------------
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ-KYLG-DGPKLVRELFRVAE----------------------- 133 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~-~~~g-~~~~~l~~~f~~a~----------------------- 133 (317)
.+||+||||||||+ ++|..++.+|+.++++.+.. .|+| +.+..++.+|+.|.
T Consensus 49 ~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~ri 128 (441)
T TIGR00390 49 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERI 128 (441)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 57899999999999 99999999999999998874 7888 67888888888770
Q ss_pred --------------------------------------------------------------------------------
Q psy7780 134 -------------------------------------------------------------------------------- 133 (317)
Q Consensus 134 -------------------------------------------------------------------------------- 133 (317)
T Consensus 129 v~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (441)
T TIGR00390 129 VDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQK 208 (441)
T ss_pred HHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCC
Confidence
Q ss_pred ------------------------------------hhCCceEeecccccccccccCCC-CCchhHHHHHHHHHHHHhcC
Q psy7780 134 ------------------------------------EHAPSIVFIDEIDAVGTKRYDSN-SGGEREIQRTMLELLNQLDG 176 (317)
Q Consensus 134 ------------------------------------~~~P~Ii~iDEiD~l~~~r~~~~-~~~~~~~~~~l~~ll~~ld~ 176 (317)
..+-.||||||||.++.+..+.+ +-+..-+|+. ||..++|
T Consensus 209 ~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~---LLkilEG 285 (441)
T TIGR00390 209 KKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKGESSGADVSREGVQRD---LLPIVEG 285 (441)
T ss_pred CceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEchhhhcccCCCCCCCCCccchhcc---ccccccC
Confidence 01235999999999997653222 1222235554 4444555
Q ss_pred CCcccccccchhhhcccccccCCCCeEEEEEc----CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHH----HHhcC
Q psy7780 177 FDSRVQNRRLSEVYSSLTLIYLPGDVKVIMAT----NRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFN----IHTSR 248 (317)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tT----N~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~----~~l~~ 248 (317)
-.-.... . .....++++|++. ..|+.|=|.|.- ||..++.+..++.++-..||. ..+++
T Consensus 286 t~v~~k~--~---------~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~~L~~edL~rILteP~nsLikQ 352 (441)
T TIGR00390 286 STVNTKY--G---------MVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRVELQALTTDDFERILTEPKNSLIKQ 352 (441)
T ss_pred ceeeecc--e---------eEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECCCCCHHHHHHHhcCChhHHHHH
Confidence 3222100 0 1112678898876 346677788876 999999999999999999882 12221
Q ss_pred -------CCCC---cCCCHHHHHHhC-------CCCCHHHHHHHHHHHHHHHHHhc------CCCcCHHHHHHHHHHHHh
Q psy7780 249 -------MTLA---EDVNLQELIMAK-------DDLSGADIKAICTEAGLMALRER------RMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 249 -------~~~~---~~~~~~~ia~~t-------~g~s~~dl~~l~~~A~~~a~~~~------~~~it~~d~~~al~~v~~ 305 (317)
.++. .+..+..||+.+ .+.=.+-|+.++.....-+.-+. .-.|+.+-+.+.+..++.
T Consensus 353 y~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe~p~~~~~~v~I~~~~V~~~l~~~~~ 432 (441)
T TIGR00390 353 YKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFEAPDLSGQNITIDADYVSKKLGALVA 432 (441)
T ss_pred HHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCCCCCCEEEECHHHHHhHHHHHHh
Confidence 1111 223355555543 35445556666665543332221 235788888888887775
Q ss_pred hh
Q psy7780 306 RK 307 (317)
Q Consensus 306 ~~ 307 (317)
..
T Consensus 433 ~~ 434 (441)
T TIGR00390 433 DE 434 (441)
T ss_pred cC
Confidence 43
No 130
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=3.8e-11 Score=121.13 Aligned_cols=152 Identities=17% Similarity=0.202 Sum_probs=103.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce--------------------------EEEEechhhhhhhcCCchHHHHHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT--------------------------FLRVVGSELIQKYLGDGPKLVRELFRVA 132 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~--------------------------~~~v~~s~l~~~~~g~~~~~l~~~f~~a 132 (317)
.+||+||||+|||+ ++|+.+.+. ++.++.. .+.+...+|++.+.+
T Consensus 40 a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a 113 (620)
T PRK14948 40 AYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERA 113 (620)
T ss_pred eEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHH
Confidence 57899999999999 888887652 2223221 224456788888877
Q ss_pred Hhh----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEc
Q psy7780 133 EEH----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMAT 208 (317)
Q Consensus 133 ~~~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tT 208 (317)
... ...|++|||+|.+.. ...+.||..++... ..+++|++|
T Consensus 114 ~~~p~~~~~KViIIDEad~Lt~--------------~a~naLLK~LEePp---------------------~~tvfIL~t 158 (620)
T PRK14948 114 QFAPVQARWKVYVIDECHMLST--------------AAFNALLKTLEEPP---------------------PRVVFVLAT 158 (620)
T ss_pred hhChhcCCceEEEEECccccCH--------------HHHHHHHHHHhcCC---------------------cCeEEEEEe
Confidence 532 235999999998832 13344555555322 567788888
Q ss_pred CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHH
Q psy7780 209 NRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTE 278 (317)
Q Consensus 209 N~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~ 278 (317)
++++.+.++|++ |+. .++|+.++.++-...++....+.+.. ....+..+++.+.| +.+++.++++.
T Consensus 159 ~~~~~llpTIrS--Rc~-~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~lr~A~~lLek 225 (620)
T PRK14948 159 TDPQRVLPTIIS--RCQ-RFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-GLRDAESLLDQ 225 (620)
T ss_pred CChhhhhHHHHh--hee-EEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 889999999999 985 78999998888887777766554332 22336667777666 45666666654
No 131
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.27 E-value=2.8e-11 Score=115.22 Aligned_cols=211 Identities=18% Similarity=0.265 Sum_probs=137.3
Q ss_pred hhHHHhhhcCCCchh---hhhhcCCceEEEEechhhhh-hhcC-CchHHHHHHHHHHH----------------------
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ-KYLG-DGPKLVRELFRVAE---------------------- 133 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~-~~~g-~~~~~l~~~f~~a~---------------------- 133 (317)
+++||.||||||||+ ++|..++.+|+.++++++.. .|+| +.+..++.+|+.|.
T Consensus 51 ~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~r 130 (443)
T PRK05201 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEER 130 (443)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 468999999999998 99999999999999999886 6999 55788888888881
Q ss_pred ------------------------------------------------h-------------------------------
Q psy7780 134 ------------------------------------------------E------------------------------- 134 (317)
Q Consensus 134 ------------------------------------------------~------------------------------- 134 (317)
.
T Consensus 131 i~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (443)
T PRK05201 131 ILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKK 210 (443)
T ss_pred HHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCC
Confidence 0
Q ss_pred -------------------------------------hCCceEeecccccccccccCCC-CCchhHHHHHHHHHHHHhcC
Q psy7780 135 -------------------------------------HAPSIVFIDEIDAVGTKRYDSN-SGGEREIQRTMLELLNQLDG 176 (317)
Q Consensus 135 -------------------------------------~~P~Ii~iDEiD~l~~~r~~~~-~~~~~~~~~~l~~ll~~ld~ 176 (317)
.+-.||||||||.|+.+.++.+ +-+..-+|+. ||..++|
T Consensus 211 ~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~---LLki~EG 287 (443)
T PRK05201 211 KKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDKIAARGGSSGPDVSREGVQRD---LLPLVEG 287 (443)
T ss_pred CceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEcchhhcccCCCCCCCCCccchhcc---ccccccc
Confidence 0235999999999997753211 1222235554 4444555
Q ss_pred CCcccccccchhhhcccccccCCCCeEEEEEc----CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHH----HhcC
Q psy7780 177 FDSRVQNRRLSEVYSSLTLIYLPGDVKVIMAT----NRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNI----HTSR 248 (317)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tT----N~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~----~l~~ 248 (317)
-.-+... . .....+|++|++- ..|+.|-|.|.- ||..++.+..++.++-..||.. .+++
T Consensus 288 ~~v~~k~--~---------~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~~L~~~dL~~ILteP~nsLikQ 354 (443)
T PRK05201 288 STVSTKY--G---------MVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVELDALTEEDFVRILTEPKASLIKQ 354 (443)
T ss_pred ceeeecc--e---------eEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECCCCCHHHHHHHhcCChhHHHHH
Confidence 3222100 0 1112678888865 346777888987 9999999999999999998822 2222
Q ss_pred -------CCCC---cCCCHHHHHHhC-------CCCCHHHHHHHHHHHHHHHHHhc------CCCcCHHHHHHHHHHHHh
Q psy7780 249 -------MTLA---EDVNLQELIMAK-------DDLSGADIKAICTEAGLMALRER------RMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 249 -------~~~~---~~~~~~~ia~~t-------~g~s~~dl~~l~~~A~~~a~~~~------~~~it~~d~~~al~~v~~ 305 (317)
.++. .+..+..||+.+ .+.=.+-|+.++.....-+.-+- .-.|+.+-+...+..++.
T Consensus 355 y~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~Fe~p~~~~~~v~I~~~~V~~~l~~l~~ 434 (443)
T PRK05201 355 YQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISFEAPDMSGETVTIDAAYVDEKLGDLVK 434 (443)
T ss_pred HHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhccCCCCCCCEEEECHHHHHHHHHHHHh
Confidence 1111 223355565543 34445556666665543332221 235777777777777765
Q ss_pred hh
Q psy7780 306 RK 307 (317)
Q Consensus 306 ~~ 307 (317)
..
T Consensus 435 ~~ 436 (443)
T PRK05201 435 DE 436 (443)
T ss_pred cC
Confidence 43
No 132
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.26 E-value=1.6e-11 Score=115.18 Aligned_cols=150 Identities=21% Similarity=0.234 Sum_probs=103.1
Q ss_pred CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-CCC
Q psy7780 137 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-TLD 215 (317)
Q Consensus 137 P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-~Ld 215 (317)
..++|+||++.+-+ ..+..|.+.+++ +.. . +..+..+...+.++++|+|+|..+ .++
T Consensus 132 ~GvL~lDEi~~L~~-----------~~Q~~Ll~~l~~--g~~-~--------v~r~G~~~~~~~r~iviat~np~eg~l~ 189 (337)
T TIGR02030 132 RGILYIDEVNLLED-----------HLVDVLLDVAAS--GWN-V--------VEREGISIRHPARFVLVGSGNPEEGELR 189 (337)
T ss_pred CCEEEecChHhCCH-----------HHHHHHHHHHHh--CCe-E--------EEECCEEEEcCCCEEEEeccccccCCCC
Confidence 36999999998733 245666665543 100 0 001112233446789999998765 699
Q ss_pred ccccCCCcceeEEEeCCCCH-HHHHHHHHHHhcCC--CCC-----------------------cCCC--------HHHHH
Q psy7780 216 PALIRPGRIDRKIEFPLPDE-KTKRRIFNIHTSRM--TLA-----------------------EDVN--------LQELI 261 (317)
Q Consensus 216 ~al~rpgRf~~~I~~~~P~~-~~r~~Il~~~l~~~--~~~-----------------------~~~~--------~~~ia 261 (317)
++++. ||...+.+++|.. ++|.+|++...... +.. .++. +.+++
T Consensus 190 ~~Lld--Rf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~ 267 (337)
T TIGR02030 190 PQLLD--RFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELC 267 (337)
T ss_pred HHHHh--hcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 99999 9999999999975 89999998743210 000 1111 22333
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhccC
Q psy7780 262 MAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEG 310 (317)
Q Consensus 262 ~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~~~ 310 (317)
..+..-+++--..+++.|...|..+++..|+.+|+..++.-++.++-..
T Consensus 268 ~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~vL~HR~~~ 316 (337)
T TIGR02030 268 AELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLALRHRLRK 316 (337)
T ss_pred HHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhCcC
Confidence 3444446777778889899999999999999999999999999888653
No 133
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.25 E-value=4.3e-11 Score=115.97 Aligned_cols=200 Identities=15% Similarity=0.119 Sum_probs=115.6
Q ss_pred hhhHHHhhhcCCCchh---hhhhcCCc--eEEEEech-hhhhhhcCCc-hHHH--HHHHHHHHhh---CCceEeeccccc
Q psy7780 80 VGSELIQKYLGDGPKL---AVANQTSA--TFLRVVGS-ELIQKYLGDG-PKLV--RELFRVAEEH---APSIVFIDEIDA 147 (317)
Q Consensus 80 ~g~~Ll~G~pGtGKT~---aiA~~~~~--~~~~v~~s-~l~~~~~g~~-~~~l--~~~f~~a~~~---~P~Ii~iDEiD~ 147 (317)
+|++||+||||||||+ ++|...+. +|..+.+. ..-...+|.. -... ..-|...... ...++|+|||..
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r 118 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK 118 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccccc
Confidence 3489999999999999 77765532 33333221 0111222211 0010 1112222111 124999999975
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC---CCCccccCCCcc
Q psy7780 148 VGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE---TLDPALIRPGRI 224 (317)
Q Consensus 148 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~---~Ld~al~rpgRf 224 (317)
+.+ ..+..|.+.+++-. ++.......+|.+++++++ |... ...+|+.. ||
T Consensus 119 asp-----------~~QsaLLeam~Er~-------------~t~g~~~~~lp~rfiv~AT-N~LPE~g~~leAL~D--RF 171 (498)
T PRK13531 119 AGP-----------AILNTLLTAINERR-------------FRNGAHEEKIPMRLLVTAS-NELPEADSSLEALYD--RM 171 (498)
T ss_pred CCH-----------HHHHHHHHHHHhCe-------------EecCCeEEeCCCcEEEEEC-CCCcccCCchHHhHh--hE
Confidence 432 34556666654411 1122233444444544444 7422 13349999 99
Q ss_pred eeEEEeCCCC-HHHHHHHHHHHhcC--CCC--CcCCC-----------------------HHHHHHh---C---CCCCHH
Q psy7780 225 DRKIEFPLPD-EKTKRRIFNIHTSR--MTL--AEDVN-----------------------LQELIMA---K---DDLSGA 270 (317)
Q Consensus 225 ~~~I~~~~P~-~~~r~~Il~~~l~~--~~~--~~~~~-----------------------~~~ia~~---t---~g~s~~ 270 (317)
-.++.+|+|+ .++-.+|+...... .+. ..-+. +.+++.. + ...|++
T Consensus 172 liri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR 251 (498)
T PRK13531 172 LIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDR 251 (498)
T ss_pred EEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcH
Confidence 9999999997 56667888764321 111 00111 1223321 2 237899
Q ss_pred HHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhh
Q psy7780 271 DIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRK 307 (317)
Q Consensus 271 dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~ 307 (317)
--.++++-|...|.-.+|..|+++|+. .+..++.++
T Consensus 252 ~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~HR 287 (498)
T PRK13531 252 RWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWHD 287 (498)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhccC
Confidence 999999999999999999999999999 778777654
No 134
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=4.9e-11 Score=120.18 Aligned_cols=169 Identities=14% Similarity=0.162 Sum_probs=110.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce-------------------------EEEEechhhhhhhcCCchHHHHHHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT-------------------------FLRVVGSELIQKYLGDGPKLVRELFRVAE 133 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~-------------------------~~~v~~s~l~~~~~g~~~~~l~~~f~~a~ 133 (317)
.+||+||||+|||+ ++|+.+.+. ++.++++. ..+...++++.+.+.
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~ 113 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQ 113 (585)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHh
Confidence 46899999999999 777776542 22232211 122345566655443
Q ss_pred hh----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcC
Q psy7780 134 EH----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATN 209 (317)
Q Consensus 134 ~~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN 209 (317)
.. ...||+|||+|.+.. ..+..|+..++... ..+++|++|+
T Consensus 114 ~~p~~~~~kVvIIDEa~~L~~--------------~a~naLLk~LEepp---------------------~~tv~Il~t~ 158 (585)
T PRK14950 114 FRPALARYKVYIIDEVHMLST--------------AAFNALLKTLEEPP---------------------PHAIFILATT 158 (585)
T ss_pred hCcccCCeEEEEEeChHhCCH--------------HHHHHHHHHHhcCC---------------------CCeEEEEEeC
Confidence 22 235999999998742 12334555554432 4566777788
Q ss_pred CCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy7780 210 RIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERR 288 (317)
Q Consensus 210 ~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~ 288 (317)
..+.+.+.+++ |+. .++|+.++..+...+++....+.++. ++..+..++..+.| +.+++.+.++..... ..
T Consensus 159 ~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~al~~LekL~~y----~~ 230 (585)
T PRK14950 159 EVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRDAENLLQQLATT----YG 230 (585)
T ss_pred ChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh----cC
Confidence 88889899998 885 78999999999999888887655443 22346677777766 788877777754332 23
Q ss_pred CCcCHHHHHHH
Q psy7780 289 MKVTNEDFKKS 299 (317)
Q Consensus 289 ~~it~~d~~~a 299 (317)
..|+.+++.+.
T Consensus 231 ~~It~e~V~~l 241 (585)
T PRK14950 231 GEISLSQVQSL 241 (585)
T ss_pred CCCCHHHHHHH
Confidence 45777776553
No 135
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=5.2e-11 Score=119.76 Aligned_cols=180 Identities=12% Similarity=0.131 Sum_probs=110.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEE----------Eec---h---hhhh-------hhcC---CchHHHHHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLR----------VVG---S---ELIQ-------KYLG---DGPKLVRELFRVA 132 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~----------v~~---s---~l~~-------~~~g---~~~~~l~~~f~~a 132 (317)
.+||+||||||||+ ++|+.+.+.--. -.| . .+.. .+-| .+...|+++.+.+
T Consensus 40 a~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~ 119 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENV 119 (620)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHH
Confidence 47999999999999 788877662100 011 0 0000 0111 1234566665555
Q ss_pred Hh----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEc
Q psy7780 133 EE----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMAT 208 (317)
Q Consensus 133 ~~----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tT 208 (317)
.. ...-|++|||+|.+... ..+.|+..++... +.+++|++|
T Consensus 120 ~~~P~~~~~KVvIIdEad~Lt~~--------------a~naLLK~LEePp---------------------~~tv~IL~t 164 (620)
T PRK14954 120 RYGPQKGRYRVYIIDEVHMLSTA--------------AFNAFLKTLEEPP---------------------PHAIFIFAT 164 (620)
T ss_pred HhhhhcCCCEEEEEeChhhcCHH--------------HHHHHHHHHhCCC---------------------CCeEEEEEe
Confidence 32 12359999999988421 2334555444432 456677777
Q ss_pred CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH-Hh
Q psy7780 209 NRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMAL-RE 286 (317)
Q Consensus 209 N~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~-~~ 286 (317)
+.+..|.+++++ |+. .++|..++.++....++..+.+.+.. ++..++.++..+.| +.+++.+.++....++. ..
T Consensus 165 ~~~~kLl~TI~S--Rc~-~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G-dlr~al~eLeKL~~y~~~~~ 240 (620)
T PRK14954 165 TELHKIPATIAS--RCQ-RFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG-SMRDAQSILDQVIAFSVGSE 240 (620)
T ss_pred CChhhhhHHHHh--hce-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHHHHHHHHHHHHHhccccc
Confidence 778999999999 884 89999999999888888776654432 33346667777665 66666666665444431 12
Q ss_pred cCCCcCHHHHHHHH
Q psy7780 287 RRMKVTNEDFKKSK 300 (317)
Q Consensus 287 ~~~~it~~d~~~al 300 (317)
....|+.+++.+.+
T Consensus 241 ~~~~It~~~V~~lv 254 (620)
T PRK14954 241 AEKVIAYQGVAELL 254 (620)
T ss_pred cCCccCHHHHHHHH
Confidence 24567777775543
No 136
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=6.5e-11 Score=113.45 Aligned_cols=146 Identities=18% Similarity=0.206 Sum_probs=95.7
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce-----------------------EEEEechhhhhhhcCCchHHHHHHHHHHHhh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT-----------------------FLRVVGSELIQKYLGDGPKLVRELFRVAEEH 135 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~-----------------------~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~ 135 (317)
.+||+||||+|||+ ++|+.+.+. ++.+.... ...+-..+|++++.+...
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~-----~~i~i~~iR~l~~~~~~~ 112 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEG-----LSIGVDEVRELVTIAARR 112 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEecccc-----ccCCHHHHHHHHHHHHhC
Confidence 58999999999998 666655442 12221110 112244688888887643
Q ss_pred ----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC
Q psy7780 136 ----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI 211 (317)
Q Consensus 136 ----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~ 211 (317)
...|++|||+|.+... .++. ||..|+... .++++|.+|+++
T Consensus 113 p~~~~~kViiIDead~m~~~-----------aana---LLk~LEep~---------------------~~~~fIL~a~~~ 157 (394)
T PRK07940 113 PSTGRWRIVVIEDADRLTER-----------AANA---LLKAVEEPP---------------------PRTVWLLCAPSP 157 (394)
T ss_pred cccCCcEEEEEechhhcCHH-----------HHHH---HHHHhhcCC---------------------CCCeEEEEECCh
Confidence 2359999999998432 1233 444444321 445566666669
Q ss_pred CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHH
Q psy7780 212 ETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKA 274 (317)
Q Consensus 212 ~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~ 274 (317)
+.|+|++++ |+ ..++|++|+.++..+++.... +.. ......++..+.|..++.+.-
T Consensus 158 ~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 158 EDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARRL 213 (394)
T ss_pred HHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHHH
Confidence 999999999 99 599999999999888876332 222 233556788888877665543
No 137
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.22 E-value=5.7e-11 Score=122.67 Aligned_cols=175 Identities=20% Similarity=0.251 Sum_probs=114.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh------------hcCCchHHHHHHHHHHHhhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK------------YLGDGPKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~------------~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
..||.||||||||+ ++|+.++.+++.++++++.++ |+|..+ ...+.+..+.+..+||+|||+|
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEie 563 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIE 563 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccch--hhHHHHHHHhCCCeEEEEechh
Confidence 46999999999999 999999999999999886542 223221 2234444555666899999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC--------------
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-------------- 212 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-------------- 212 (317)
.+.+ +++..|.++++. |.-....+.. ..-.+.++|+|||...
T Consensus 564 ka~~-----------~~~~~Ll~~ld~--g~~~d~~g~~-----------vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~ 619 (731)
T TIGR02639 564 KAHP-----------DIYNILLQVMDY--ATLTDNNGRK-----------ADFRNVILIMTSNAGASEMSKPPIGFGSEN 619 (731)
T ss_pred hcCH-----------HHHHHHHHhhcc--CeeecCCCcc-----------cCCCCCEEEECCCcchhhhhhccCCcchhh
Confidence 7742 345555555543 1110000000 0115788999998732
Q ss_pred -----------CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCC---------CC-cCCCHHHHHHh--CCCCCH
Q psy7780 213 -----------TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMT---------LA-EDVNLQELIMA--KDDLSG 269 (317)
Q Consensus 213 -----------~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~---------~~-~~~~~~~ia~~--t~g~s~ 269 (317)
.+.|.++. |||.+|.|.+.+.++..+|++..+++.. +. ++...+.++.. ...+-.
T Consensus 620 ~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~Ga 697 (731)
T TIGR02639 620 VESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGA 697 (731)
T ss_pred hHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCc
Confidence 25677887 9999999999999999999998875421 11 22224445553 345667
Q ss_pred HHHHHHHHHHHHHHH
Q psy7780 270 ADIKAICTEAGLMAL 284 (317)
Q Consensus 270 ~dl~~l~~~A~~~a~ 284 (317)
+.|+.+++.-....+
T Consensus 698 R~l~r~i~~~~~~~l 712 (731)
T TIGR02639 698 RPLARVIQEEIKKPL 712 (731)
T ss_pred hHHHHHHHHHhHHHH
Confidence 778877776554443
No 138
>PRK09087 hypothetical protein; Validated
Probab=99.22 E-value=8.2e-11 Score=104.78 Aligned_cols=168 Identities=16% Similarity=0.156 Sum_probs=106.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+..|+|++|+|||+ ++|+..++. +++..++...+ +..... .+|+|||++.+..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~~-----------~~~~~~---~~l~iDDi~~~~~-------- 101 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSDA-----------ANAAAE---GPVLIEDIDAGGF-------- 101 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchHH-----------HHhhhc---CeEEEECCCCCCC--------
Confidence 36799999999999 777776655 34333322211 111111 4888999997621
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC---CCccccCCCcce--eEEEeCCC
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET---LDPALIRPGRID--RKIEFPLP 233 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~---Ld~al~rpgRf~--~~I~~~~P 233 (317)
.+.++-.+++.+.+. +..+||+++..|.. ..+.|++ ||. ..+++..|
T Consensus 102 ~~~~lf~l~n~~~~~--------------------------g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~p 153 (226)
T PRK09087 102 DETGLFHLINSVRQA--------------------------GTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEP 153 (226)
T ss_pred CHHHHHHHHHHHHhC--------------------------CCeEEEECCCChHHhccccccHHH--HHhCCceeecCCC
Confidence 122233333333221 44556666544443 3688999 985 78999999
Q ss_pred CHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q psy7780 234 DEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESV 303 (317)
Q Consensus 234 ~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v 303 (317)
+.+.|.++++.+++..++. ++..++.|+++..+ +.+.+..+++.-...+...+ ..+|...++++++.+
T Consensus 154 d~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 154 DDALLSQVIFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 9999999999998765544 33446667777654 45555555555444554444 559999999998865
No 139
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.21 E-value=1.1e-10 Score=109.70 Aligned_cols=150 Identities=19% Similarity=0.185 Sum_probs=102.6
Q ss_pred CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-CCC
Q psy7780 137 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-TLD 215 (317)
Q Consensus 137 P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-~Ld 215 (317)
..+||+||++.+-+. .+..|.+.+++ +. .. +..+..+...+.++++|+|.|..+ .++
T Consensus 145 ~GiL~lDEInrL~~~-----------~Q~~LLeam~e--~~-~~--------ier~G~s~~~p~rfiviaT~np~eg~l~ 202 (350)
T CHL00081 145 RGILYVDEVNLLDDH-----------LVDILLDSAAS--GW-NT--------VEREGISIRHPARFVLVGSGNPEEGELR 202 (350)
T ss_pred CCEEEecChHhCCHH-----------HHHHHHHHHHh--CC-eE--------EeeCCeeeecCCCEEEEeccCcccCCCC
Confidence 369999999988533 35555555543 10 00 000112234457899999999766 599
Q ss_pred ccccCCCcceeEEEeCCCC-HHHHHHHHHHHhcCC--CCC--------cCCC-----------------------HHHHH
Q psy7780 216 PALIRPGRIDRKIEFPLPD-EKTKRRIFNIHTSRM--TLA--------EDVN-----------------------LQELI 261 (317)
Q Consensus 216 ~al~rpgRf~~~I~~~~P~-~~~r~~Il~~~l~~~--~~~--------~~~~-----------------------~~~ia 261 (317)
++++. ||...+.+..|+ .+.+.+|++...... +.. .... +.+++
T Consensus 203 ~~Lld--Rf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~ 280 (350)
T CHL00081 203 PQLLD--RFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQIC 280 (350)
T ss_pred HHHHH--HhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 99999 999999999997 699999998753211 000 0001 12233
Q ss_pred HhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhccC
Q psy7780 262 MAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEG 310 (317)
Q Consensus 262 ~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~~~ 310 (317)
..+.--+++--..+++.|...|+-+++..|+.+|+..+..-++.++-..
T Consensus 281 ~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~vL~HR~~~ 329 (350)
T CHL00081 281 SELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLCLRHRLRK 329 (350)
T ss_pred HHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhCcC
Confidence 3344446777777888888899999999999999999999999888653
No 140
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.18 E-value=2.4e-10 Score=108.83 Aligned_cols=188 Identities=19% Similarity=0.253 Sum_probs=127.0
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeeccccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRY 153 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~ 153 (317)
|.++||+.|.|||. |++++. +..+++++...++..++-.....=.+-|..-. +-.+++||+++.+.++.
T Consensus 115 plfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~- 191 (408)
T COG0593 115 PLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKE- 191 (408)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCCh-
Confidence 78999999999998 666655 45788888888776655333222233455444 33699999999998764
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCC---CccccCCCcce--eEE
Q psy7780 154 DSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETL---DPALIRPGRID--RKI 228 (317)
Q Consensus 154 ~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~L---d~al~rpgRf~--~~I 228 (317)
..+.+.-.+++.+.+. ++-+|+.+-..|..+ .|.|++ ||. ..+
T Consensus 192 ----~~qeefFh~FN~l~~~--------------------------~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~ 239 (408)
T COG0593 192 ----RTQEEFFHTFNALLEN--------------------------GKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVV 239 (408)
T ss_pred ----hHHHHHHHHHHHHHhc--------------------------CCEEEEEcCCCchhhccccHHHHH--HHhceeEE
Confidence 1244445555555443 444444444556664 588999 985 667
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhh
Q psy7780 229 EFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYR 306 (317)
Q Consensus 229 ~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~ 306 (317)
.+.+|+.+.|..||+......++. ++.-..-++..... +.+++..+++.....|...++ .||.+.+.++++.+...
T Consensus 240 ~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a~~~~~-~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 240 EIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFALFTKR-AITIDLVKEILKDLLRA 316 (408)
T ss_pred eeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcCc-cCcHHHHHHHHHHhhcc
Confidence 888999999999999976655554 33335556665443 678888777777666665554 67777777777776643
No 141
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.18 E-value=1.8e-10 Score=116.02 Aligned_cols=205 Identities=18% Similarity=0.218 Sum_probs=128.0
Q ss_pred hhhHHHhhhcCCCchh---hhhhcCCc--eEEEEechhhhhhhcCCchHHHHHHHHHH---------HhhCCceEeeccc
Q psy7780 80 VGSELIQKYLGDGPKL---AVANQTSA--TFLRVVGSELIQKYLGDGPKLVRELFRVA---------EEHAPSIVFIDEI 145 (317)
Q Consensus 80 ~g~~Ll~G~pGtGKT~---aiA~~~~~--~~~~v~~s~l~~~~~g~~~~~l~~~f~~a---------~~~~P~Ii~iDEi 145 (317)
.|++|+.|+||||||+ ++++.+.. +|+.+..+..-+..+|.. .+...+... .+....+||+||+
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi 93 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMA 93 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccch
Confidence 5789999999999999 77776643 688887533223233321 111111100 0111259999999
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC---CCCccccCCC
Q psy7780 146 DAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE---TLDPALIRPG 222 (317)
Q Consensus 146 D~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~---~Ld~al~rpg 222 (317)
+.+-+. .+..|.+.+++ +. .. +..+..+...+.++.||+|+|..+ .|+++|+.
T Consensus 94 ~rl~~~-----------~q~~Ll~al~~--g~-v~--------i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~Lld-- 149 (589)
T TIGR02031 94 NLLDDG-----------LSNRLLQALDE--GV-VI--------VEREGISVVHPAKFALIATYDPAEGGGGLPDHLLD-- 149 (589)
T ss_pred hhCCHH-----------HHHHHHHHHHc--CC-eE--------EEECCCceeecCceEEEEecCCccccCCCCHHHHH--
Confidence 988532 35555555543 11 00 001122234456789999999876 79999999
Q ss_pred cceeEEEeCC-CCHHHHHHHHHHHhcCCC----C---------------C-----cCCCHHHHHHh--CCCCC-HHHHHH
Q psy7780 223 RIDRKIEFPL-PDEKTKRRIFNIHTSRMT----L---------------A-----EDVNLQELIMA--KDDLS-GADIKA 274 (317)
Q Consensus 223 Rf~~~I~~~~-P~~~~r~~Il~~~l~~~~----~---------------~-----~~~~~~~ia~~--t~g~s-~~dl~~ 274 (317)
||...+.+.. |..++|.+|++.++.... . . ++..+..++.. ..|.+ .+--..
T Consensus 150 Rf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~ 229 (589)
T TIGR02031 150 RLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLF 229 (589)
T ss_pred hccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHH
Confidence 9998888775 467889999987652210 0 0 11111222222 12443 455556
Q ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhccC
Q psy7780 275 ICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEG 310 (317)
Q Consensus 275 l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~~~ 310 (317)
+++-|...|.-+++..|+.+|+..|+.-++.++...
T Consensus 230 ~~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl~hR~~~ 265 (589)
T TIGR02031 230 AVRAAKAHAALHGRTEVTEEDLKLAVELVLLPRATR 265 (589)
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhccC
Confidence 777777888889999999999999999999887643
No 142
>PRK04132 replication factor C small subunit; Provisional
Probab=99.18 E-value=3.4e-10 Score=116.79 Aligned_cols=154 Identities=18% Similarity=0.232 Sum_probs=113.6
Q ss_pred hHHHhh--hcCCCchh---hhhhcC-----CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCC------ceEeeccc
Q psy7780 82 SELIQK--YLGDGPKL---AVANQT-----SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAP------SIVFIDEI 145 (317)
Q Consensus 82 ~~Ll~G--~pGtGKT~---aiA~~~-----~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P------~Ii~iDEi 145 (317)
+.+..| |++.|||| |+|+++ +.+++++++++-.+ -..++++...+....| -|++|||+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEA 639 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECc
Confidence 667788 89999999 899997 66899999998422 3467776665543332 59999999
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcce
Q psy7780 146 DAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRID 225 (317)
Q Consensus 146 D~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~ 225 (317)
|.+.. ..+..|..++++ .. +++.+|++||.++.+.++|++ ||.
T Consensus 640 D~Lt~-----------~AQnALLk~lEe---p~---------------------~~~~FILi~N~~~kIi~tIrS--RC~ 682 (846)
T PRK04132 640 DALTQ-----------DAQQALRRTMEM---FS---------------------SNVRFILSCNYSSKIIEPIQS--RCA 682 (846)
T ss_pred ccCCH-----------HHHHHHHHHhhC---CC---------------------CCeEEEEEeCChhhCchHHhh--hce
Confidence 99842 234555555544 22 568899999999999999999 994
Q ss_pred eEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHH
Q psy7780 226 RKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAG 280 (317)
Q Consensus 226 ~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~ 280 (317)
.+.|++|+.++....++....+.++. ++..+..++..+.| +.+...++++.++
T Consensus 683 -~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~G-DlR~AIn~Lq~~~ 736 (846)
T PRK04132 683 -IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 736 (846)
T ss_pred -EEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 89999999999998888776654433 34457788888777 4555556666544
No 143
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.15 E-value=9.8e-11 Score=103.81 Aligned_cols=164 Identities=17% Similarity=0.265 Sum_probs=99.0
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEechhhhhhhcCCch-HHHHHHHHHHHhhCCceEeecccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVVGSELIQKYLGDGP-KLVRELFRVAEEHAPSIVFIDEIDAVGTKR 152 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s~l~~~~~g~~~-~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r 152 (317)
|..+||++|+|||. |+++++ +..++++++.++...+..... ..+.++.+..+ ...+|+||+++.+..+.
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~~ 113 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGKQ 113 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCch
Confidence 45799999999999 777664 678999999888765432221 12222222222 33799999999986432
Q ss_pred cCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC---CCccccCCCcce--eE
Q psy7780 153 YDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET---LDPALIRPGRID--RK 227 (317)
Q Consensus 153 ~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~---Ld~al~rpgRf~--~~ 227 (317)
..+..+..+++.+-. . ++.+||++...|.. +++.|.+ ||. ..
T Consensus 114 ---------~~q~~lf~l~n~~~~---~-------------------~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~ 160 (219)
T PF00308_consen 114 ---------RTQEELFHLFNRLIE---S-------------------GKQLILTSDRPPSELSGLLPDLRS--RLSWGLV 160 (219)
T ss_dssp ---------HHHHHHHHHHHHHHH---T-------------------TSEEEEEESS-TTTTTTS-HHHHH--HHHCSEE
T ss_pred ---------HHHHHHHHHHHHHHh---h-------------------CCeEEEEeCCCCccccccChhhhh--hHhhcch
Confidence 234444445444332 1 44455555555665 5678888 885 58
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy7780 228 IEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGL 281 (317)
Q Consensus 228 I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~ 281 (317)
+.+..|+.+.|.+|++......++. ++.-++-++....+ +.++|..++++-..
T Consensus 161 ~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~ 214 (219)
T PF00308_consen 161 VELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLDA 214 (219)
T ss_dssp EEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHH
T ss_pred hhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHH
Confidence 8999999999999999987665554 22224556666444 77777777765433
No 144
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=3.4e-10 Score=114.90 Aligned_cols=170 Identities=21% Similarity=0.243 Sum_probs=122.6
Q ss_pred hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhhh--hhcCCchHHHHHHHHHHHhhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELIQ--KYLGDGPKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~~--~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
|+ |.|.||+|||. .+|... +..++.++.+.++. +|.|+.+..++.+.+..++..+.|+|||||+
T Consensus 194 Pv-LiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiH 272 (786)
T COG0542 194 PV-LVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIH 272 (786)
T ss_pred Ce-EecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechh
Confidence 44 45999999998 444433 57899999998874 7999999999999999998889999999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccCC
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIRP 221 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~rp 221 (317)
.+.+.-...+ + .....+.|.-.|.. +.+-+|++|+.-+ .=|+||-|
T Consensus 273 tiVGAG~~~G-~-a~DAaNiLKPaLAR--------------------------GeL~~IGATT~~EYRk~iEKD~AL~R- 323 (786)
T COG0542 273 TIVGAGATEG-G-AMDAANLLKPALAR--------------------------GELRCIGATTLDEYRKYIEKDAALER- 323 (786)
T ss_pred hhcCCCcccc-c-ccchhhhhHHHHhc--------------------------CCeEEEEeccHHHHHHHhhhchHHHh-
Confidence 9987643322 1 34456666666655 7788999996533 36999999
Q ss_pred CcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcC-----CCHHHHHHh-----CCCCCHHHHHHHHHHHHHHH
Q psy7780 222 GRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAED-----VNLQELIMA-----KDDLSGADIKAICTEAGLMA 283 (317)
Q Consensus 222 gRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~-----~~~~~ia~~-----t~g~s~~dl~~l~~~A~~~a 283 (317)
||. .|.+..|+.++-..||+-.-.++..... ..+...+.. ++.|-|.---.++.+|+...
T Consensus 324 -RFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~ 393 (786)
T COG0542 324 -RFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARV 393 (786)
T ss_pred -cCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHH
Confidence 996 8999999999999999877554433222 223333333 23344444456666665443
No 145
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.15 E-value=1.4e-10 Score=117.90 Aligned_cols=203 Identities=18% Similarity=0.232 Sum_probs=125.5
Q ss_pred hhHHHhhhcCCCchh---hhhhcC-----------------------------------CceEEEEechhhhhhhcCCch
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT-----------------------------------SATFLRVVGSELIQKYLGDGP 122 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~-----------------------------------~~~~~~v~~s~l~~~~~g~~~ 122 (317)
|++||+|+||||||+ ++++.+ ..+|+.+.++...+..+|...
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d 105 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD 105 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc
Confidence 569999999999999 776665 356777665543333333220
Q ss_pred HHHHHHHHHH---------HhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccc
Q psy7780 123 KLVRELFRVA---------EEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSL 193 (317)
Q Consensus 123 ~~l~~~f~~a---------~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~ 193 (317)
+...+... ......||||||++.+... .+..|.++++. +.. .+..+.
T Consensus 106 --~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~-----------~q~~Ll~~le~--g~~---------~v~r~g 161 (633)
T TIGR02442 106 --IERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDH-----------LVDVLLDAAAM--GVN---------RVEREG 161 (633)
T ss_pred --HHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHH-----------HHHHHHHHHhc--CCE---------EEEECC
Confidence 11111100 0111259999999988532 34555555542 100 001122
Q ss_pred ccccCCCCeEEEEEcCCC-CCCCccccCCCcceeEEEeCCCC-HHHHHHHHHHHhcCC--C-------------------
Q psy7780 194 TLIYLPGDVKVIMATNRI-ETLDPALIRPGRIDRKIEFPLPD-EKTKRRIFNIHTSRM--T------------------- 250 (317)
Q Consensus 194 ~~~~~~~~v~vI~tTN~~-~~Ld~al~rpgRf~~~I~~~~P~-~~~r~~Il~~~l~~~--~------------------- 250 (317)
.+...+.++.+|+|+|.. ..+.++|+. ||+..|.++.|. .+++.++++..+... .
T Consensus 162 ~~~~~~~~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 239 (633)
T TIGR02442 162 LSVSHPARFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIA 239 (633)
T ss_pred ceeeecCCeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHH
Confidence 223344679999999964 358999999 999999999874 678888886543210 0
Q ss_pred ----CC-----cCCCHHHHHHhC--CCC-CHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhcc
Q psy7780 251 ----LA-----EDVNLQELIMAK--DDL-SGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKE 309 (317)
Q Consensus 251 ----~~-----~~~~~~~ia~~t--~g~-s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~~ 309 (317)
+. ++..+..++..+ .|. +.+-...+++-|...|.-+++..|+.+|+.+|++-++.++..
T Consensus 240 ~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL~hR~~ 310 (633)
T TIGR02442 240 RARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAELVLPHRRR 310 (633)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHhhhhcc
Confidence 00 001112222221 244 456666777888788888999999999999999999988764
No 146
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.14 E-value=5.1e-12 Score=101.35 Aligned_cols=111 Identities=26% Similarity=0.319 Sum_probs=65.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEech-hhhh-hhcCCc-----h----HHHHHHHHHHHhhCCceEeeccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGS-ELIQ-KYLGDG-----P----KLVRELFRVAEEHAPSIVFIDEIDA 147 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s-~l~~-~~~g~~-----~----~~l~~~f~~a~~~~P~Ii~iDEiD~ 147 (317)
|+|++|+||+|||+ ++|..++..|.+|.++ ++.- ...|.. . -.-..+| ..|+++|||..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 57899999999999 9999999999999775 3321 111111 0 0011122 26999999987
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccCCC
Q psy7780 148 VGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIRPG 222 (317)
Q Consensus 148 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~rpg 222 (317)
.-++ .++.+.+.+.+ .++.++..++.+|.+++||+|-|+.+ .|++|++.
T Consensus 74 appk-----------tQsAlLeam~E-------------r~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~D-- 127 (131)
T PF07726_consen 74 APPK-----------TQSALLEAMEE-------------RQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLD-- 127 (131)
T ss_dssp S-HH-----------HHHHHHHHHHH-------------SEEEETTEEEE--SS-EEEEEE-TT--S------HHHHT--
T ss_pred CCHH-----------HHHHHHHHHHc-------------CeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhc--
Confidence 6443 46777777765 34566777899999999999999977 59999999
Q ss_pred cce
Q psy7780 223 RID 225 (317)
Q Consensus 223 Rf~ 225 (317)
||-
T Consensus 128 RF~ 130 (131)
T PF07726_consen 128 RFM 130 (131)
T ss_dssp TSS
T ss_pred ccc
Confidence 883
No 147
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.13 E-value=1.1e-10 Score=94.53 Aligned_cols=121 Identities=36% Similarity=0.489 Sum_probs=79.1
Q ss_pred hhHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCchHH---HHHHHHHHHhhCCceEeeccccccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDGPKL---VRELFRVAEEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~~~~---l~~~f~~a~~~~P~Ii~iDEiD~l~~~ 151 (317)
.+.+++|+||||||+ .+++.+ +.+++.+++.+............ ....+..+....+.+|++||++.+...
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~ 99 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRG 99 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhHH
Confidence 367899999999999 888877 88999999987665433222111 122233445556899999999987211
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC--CCCccccCCCcceeEEE
Q psy7780 152 RYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE--TLDPALIRPGRIDRKIE 229 (317)
Q Consensus 152 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~--~Ld~al~rpgRf~~~I~ 229 (317)
....+.+++..+.... ..+.++.+|+++|... .+++.+.+ ||+..+.
T Consensus 100 -----------~~~~~~~~i~~~~~~~------------------~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~ 148 (151)
T cd00009 100 -----------AQNALLRVLETLNDLR------------------IDRENVRVIGATNRPLLGDLDRALYD--RLDIRIV 148 (151)
T ss_pred -----------HHHHHHHHHHhcCcee------------------ccCCCeEEEEecCccccCCcChhHHh--hhccEee
Confidence 1222333333321110 0015688999999877 78888988 9988888
Q ss_pred eCC
Q psy7780 230 FPL 232 (317)
Q Consensus 230 ~~~ 232 (317)
+++
T Consensus 149 ~~~ 151 (151)
T cd00009 149 IPL 151 (151)
T ss_pred cCC
Confidence 763
No 148
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.12 E-value=5.4e-10 Score=103.05 Aligned_cols=103 Identities=25% Similarity=0.246 Sum_probs=82.5
Q ss_pred eEEEEEcCC------------CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCC
Q psy7780 202 VKVIMATNR------------IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLS 268 (317)
Q Consensus 202 v~vI~tTN~------------~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s 268 (317)
-++|++||| |..||..|+. |+ ..|...+++.++.++|+++..+...+. ++..++.++.....-|
T Consensus 321 PIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etS 397 (450)
T COG1224 321 PIIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETS 397 (450)
T ss_pred cEEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhh
Confidence 568888887 5668999999 88 478888889999999999987655444 3445677777766677
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhh
Q psy7780 269 GADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRK 307 (317)
Q Consensus 269 ~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~ 307 (317)
-+-.-+|+.-|...|.++++..|..+|+++|.+-....+
T Consensus 398 LRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF~D~k 436 (450)
T COG1224 398 LRYAVQLLTPASIIAKRRGSKRVEVEDVERAKELFLDVK 436 (450)
T ss_pred HHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHHhhHH
Confidence 788888999999999999999999999999977655443
No 149
>PHA02244 ATPase-like protein
Probab=99.11 E-value=4e-10 Score=105.89 Aligned_cols=131 Identities=21% Similarity=0.244 Sum_probs=80.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechh----hhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSE----LIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYD 154 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~----l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~ 154 (317)
|++|+||||||||+ ++|+.++.+|+.+++.. +.. +.+........-|-.|.+ ...+++|||++.+.+.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~~-~GgvLiLDEId~a~p~--- 195 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAFK-KGGLFFIDEIDASIPE--- 195 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHhh-cCCEEEEeCcCcCCHH---
Confidence 89999999999999 99999999999998531 111 111111111111222322 3579999999977432
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-----------CCCCccccCCCc
Q psy7780 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-----------ETLDPALIRPGR 223 (317)
Q Consensus 155 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-----------~~Ld~al~rpgR 223 (317)
++..|..+++. ++-.. .........++.+|+|+|.+ ..|++|+++ |
T Consensus 196 --------vq~~L~~lLd~--r~l~l-----------~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--R 252 (383)
T PHA02244 196 --------ALIIINSAIAN--KFFDF-----------ADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--R 252 (383)
T ss_pred --------HHHHHHHHhcc--CeEEe-----------cCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--h
Confidence 34444444432 11000 00011122678999999983 568999999 9
Q ss_pred ceeEEEeCCCCHHHHHHHH
Q psy7780 224 IDRKIEFPLPDEKTKRRIF 242 (317)
Q Consensus 224 f~~~I~~~~P~~~~r~~Il 242 (317)
|- .|+|++|+. ....|.
T Consensus 253 Fv-~I~~dyp~~-~E~~i~ 269 (383)
T PHA02244 253 FA-PIEFDYDEK-IEHLIS 269 (383)
T ss_pred cE-EeeCCCCcH-HHHHHh
Confidence 95 799999984 333444
No 150
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.11 E-value=5.5e-10 Score=112.75 Aligned_cols=168 Identities=17% Similarity=0.180 Sum_probs=111.2
Q ss_pred cCCCceEeechh-------------------hHHHhhhcCCCchh---hhhhcCCc------------------------
Q psy7780 70 NQTSATFLRVVG-------------------SELIQKYLGDGPKL---AVANQTSA------------------------ 103 (317)
Q Consensus 70 ~~~~~~~~~i~g-------------------~~Ll~G~pGtGKT~---aiA~~~~~------------------------ 103 (317)
..++.+|++|.| .+|||||+|+|||+ ++|..+.+
T Consensus 10 kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~ 89 (614)
T PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRS 89 (614)
T ss_pred HHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCC
Confidence 346667777777 47999999999998 66665542
Q ss_pred -eEEEEechhhhhhhcCCchHHHHHHHHHHHhhC----CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCC
Q psy7780 104 -TFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA----PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFD 178 (317)
Q Consensus 104 -~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~----P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~ 178 (317)
+++.+++.+ ..+...++.+.+.+.... .-|++|||+|.+.. .....|+..|+...
T Consensus 90 ~n~~~ld~~~------~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~--------------~a~naLLK~LEepp 149 (614)
T PRK14971 90 YNIHELDAAS------NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ--------------AAFNAFLKTLEEPP 149 (614)
T ss_pred CceEEecccc------cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH--------------HHHHHHHHHHhCCC
Confidence 344444321 122446777776664322 24999999998832 12334444444432
Q ss_pred cccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCc-CCCH
Q psy7780 179 SRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAE-DVNL 257 (317)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~-~~~~ 257 (317)
...++|++|+....|-++|++ |+. .++|..++.++....++..+.+.++.- ...+
T Consensus 150 ---------------------~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al 205 (614)
T PRK14971 150 ---------------------SYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEGITAEPEAL 205 (614)
T ss_pred ---------------------CCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 456677777778899999999 985 799999999999999888776655542 2346
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHHHH
Q psy7780 258 QELIMAKDDLSGADIKAICTEAGLM 282 (317)
Q Consensus 258 ~~ia~~t~g~s~~dl~~l~~~A~~~ 282 (317)
..++..+.| +.+++.+++.....+
T Consensus 206 ~~La~~s~g-dlr~al~~Lekl~~y 229 (614)
T PRK14971 206 NVIAQKADG-GMRDALSIFDQVVSF 229 (614)
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 667777654 666766666654433
No 151
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.10 E-value=8.1e-10 Score=108.13 Aligned_cols=174 Identities=18% Similarity=0.199 Sum_probs=126.3
Q ss_pred CCCceEeechh-------------------hHHHhhhcCCCchh---hhhhcCCceE--EEEech------hhh------
Q psy7780 71 QTSATFLRVVG-------------------SELIQKYLGDGPKL---AVANQTSATF--LRVVGS------ELI------ 114 (317)
Q Consensus 71 ~~~~~~~~i~g-------------------~~Ll~G~pGtGKT~---aiA~~~~~~~--~~v~~s------~l~------ 114 (317)
.++.+|+|+.| .+||.||-|||||+ .+|..+++.= ..-.|. ++.
T Consensus 10 yRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~D 89 (515)
T COG2812 10 YRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLID 89 (515)
T ss_pred hCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCccc
Confidence 36778888888 89999999999999 7777776531 100111 111
Q ss_pred ----hhhcCCchHHHHHHHHHHHh----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccc
Q psy7780 115 ----QKYLGDGPKLVRELFRVAEE----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRL 186 (317)
Q Consensus 115 ----~~~~g~~~~~l~~~f~~a~~----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~ 186 (317)
+.-...+-..+|++-+.+.. ...-|.+|||++-+. ...++.||..++.-.
T Consensus 90 viEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--------------~~afNALLKTLEEPP-------- 147 (515)
T COG2812 90 VIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--------------KQAFNALLKTLEEPP-------- 147 (515)
T ss_pred chhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh--------------HHHHHHHhcccccCc--------
Confidence 11122345567887777643 224599999999873 245667777665432
Q ss_pred hhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcC-CCHHHHHHhCC
Q psy7780 187 SEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAED-VNLQELIMAKD 265 (317)
Q Consensus 187 ~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~-~~~~~ia~~t~ 265 (317)
.+|.+|.+|..+..+|+.+++ |+. ++.|...+.++....+...+.+.++..+ ..+.-+++..+
T Consensus 148 -------------~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~ 211 (515)
T COG2812 148 -------------SHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAE 211 (515)
T ss_pred -------------cCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcC
Confidence 679999999999999999999 995 7899999999999999999887766633 34566677777
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy7780 266 DLSGADIKAICTEAGLMA 283 (317)
Q Consensus 266 g~s~~dl~~l~~~A~~~a 283 (317)
| |.+|..+++..|....
T Consensus 212 G-s~RDalslLDq~i~~~ 228 (515)
T COG2812 212 G-SLRDALSLLDQAIAFG 228 (515)
T ss_pred C-ChhhHHHHHHHHHHcc
Confidence 7 8899999999876553
No 152
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.10 E-value=5.7e-10 Score=101.46 Aligned_cols=85 Identities=14% Similarity=0.159 Sum_probs=69.4
Q ss_pred cccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-----cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCc
Q psy7780 217 ALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-----EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKV 291 (317)
Q Consensus 217 al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-----~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~i 291 (317)
.+.+ |+...+++++.+.++..+++...+...+.. .+..++.+.+.+.|. ++.|..+|..|...|..++...|
T Consensus 178 ~l~~--r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i 254 (269)
T TIGR03015 178 QLRQ--RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREI 254 (269)
T ss_pred HHHh--heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCC
Confidence 3556 788889999999999999998887654321 233567778889996 56799999999999999999999
Q ss_pred CHHHHHHHHHHHH
Q psy7780 292 TNEDFKKSKESVL 304 (317)
Q Consensus 292 t~~d~~~al~~v~ 304 (317)
+.+++..++..+.
T Consensus 255 ~~~~v~~~~~~~~ 267 (269)
T TIGR03015 255 GGEEVREVIAEID 267 (269)
T ss_pred CHHHHHHHHHHhh
Confidence 9999999998764
No 153
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.05 E-value=4.5e-10 Score=90.09 Aligned_cols=121 Identities=26% Similarity=0.343 Sum_probs=80.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce---EEEEechhhhhh--------------hcCCchHHHHHHHHHHHhhCCceEe
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT---FLRVVGSELIQK--------------YLGDGPKLVRELFRVAEEHAPSIVF 141 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~---~~~v~~s~l~~~--------------~~g~~~~~l~~~f~~a~~~~P~Ii~ 141 (317)
..+++||||||||+ ++|..+... ++.+++...... .........+.+++.|+...|.+|+
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vii 83 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLI 83 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 46789999999999 788888775 888887754321 2234566788899999988889999
Q ss_pred ecccccccccccCCCCCchhHHHHHHHHH--HHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC-CCCCCccc
Q psy7780 142 IDEIDAVGTKRYDSNSGGEREIQRTMLEL--LNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR-IETLDPAL 218 (317)
Q Consensus 142 iDEiD~l~~~r~~~~~~~~~~~~~~l~~l--l~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~-~~~Ld~al 218 (317)
+||++.+..... ....... ......... .....+|+++|. ....+..+
T Consensus 84 iDei~~~~~~~~----------~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~~~~~~~~~~~~~~ 134 (148)
T smart00382 84 LDEITSLLDAEQ----------EALLLLLEELRLLLLLKS-------------------EKNLTVILTTNDEKDLGPALL 134 (148)
T ss_pred EECCcccCCHHH----------HHHHHhhhhhHHHHHHHh-------------------cCCCEEEEEeCCCccCchhhh
Confidence 999999865431 0000000 000000001 156778999987 45566666
Q ss_pred cCCCcceeEEEeCCC
Q psy7780 219 IRPGRIDRKIEFPLP 233 (317)
Q Consensus 219 ~rpgRf~~~I~~~~P 233 (317)
.+ |++..+.++.+
T Consensus 135 ~~--~~~~~~~~~~~ 147 (148)
T smart00382 135 RR--RFDRRIVLLLI 147 (148)
T ss_pred hh--ccceEEEecCC
Confidence 66 88888888665
No 154
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.03 E-value=1.7e-09 Score=112.96 Aligned_cols=172 Identities=17% Similarity=0.270 Sum_probs=109.7
Q ss_pred HHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhh------------hcCCchHHHHHHHHHHHhhCCceEeecc
Q psy7780 83 ELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQK------------YLGDGPKLVRELFRVAEEHAPSIVFIDE 144 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~------------~~g~~~~~l~~~f~~a~~~~P~Ii~iDE 144 (317)
.||.||||||||. ++|..+ ...++.++++++... |+|..+.- .+.+..+++..+||+|||
T Consensus 599 ~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g--~L~~~v~~~p~svvllDE 676 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGG--VLTEAVRRKPYSVVLLDE 676 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccc--hHHHHHHhCCCcEEEEec
Confidence 6999999999999 888887 458899999887543 44443221 233445567779999999
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC------------
Q psy7780 145 IDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE------------ 212 (317)
Q Consensus 145 iD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~------------ 212 (317)
||... .++...|.++++. |.-....+..+ .-.+.++|+|||...
T Consensus 677 ieka~-----------~~v~~~Llq~ld~--g~l~d~~Gr~v-----------d~~n~iiI~TSNlg~~~~~~~~~~~~~ 732 (852)
T TIGR03345 677 VEKAH-----------PDVLELFYQVFDK--GVMEDGEGREI-----------DFKNTVILLTSNAGSDLIMALCADPET 732 (852)
T ss_pred hhhcC-----------HHHHHHHHHHhhc--ceeecCCCcEE-----------eccccEEEEeCCCchHHHHHhccCccc
Confidence 98653 2345555555543 21111111110 015788999998521
Q ss_pred -----------------CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC--------CC--C-cCCCHHHHHHhC
Q psy7780 213 -----------------TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM--------TL--A-EDVNLQELIMAK 264 (317)
Q Consensus 213 -----------------~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~--------~~--~-~~~~~~~ia~~t 264 (317)
.+.|+++. |++ .|.|.+++.++..+|+...+... ++ . ++...+.|+...
T Consensus 733 ~~~~~~~~~~~~~~~~~~f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g 809 (852)
T TIGR03345 733 APDPEALLEALRPELLKVFKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARC 809 (852)
T ss_pred CcchHHHHHHHHHHHHHhccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHc
Confidence 15678888 997 89999999999999998876442 22 1 222245566654
Q ss_pred CC--CCHHHHHHHHHHHHHHH
Q psy7780 265 DD--LSGADIKAICTEAGLMA 283 (317)
Q Consensus 265 ~g--~s~~dl~~l~~~A~~~a 283 (317)
.+ +-.+.++++++.-...+
T Consensus 810 ~~~~~GAR~L~r~Ie~~i~~~ 830 (852)
T TIGR03345 810 TEVESGARNIDAILNQTLLPE 830 (852)
T ss_pred CCCCCChHHHHHHHHHHHHHH
Confidence 33 45777888777644433
No 155
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.03 E-value=1.2e-09 Score=110.35 Aligned_cols=107 Identities=20% Similarity=0.272 Sum_probs=73.2
Q ss_pred CCCCeEEEEEcCCC--CCCCccccCCCcce---eEEEeCC--C-CHHHHHHHHHHHhc---CCCCCcCCC---HHHHHHh
Q psy7780 198 LPGDVKVIMATNRI--ETLDPALIRPGRID---RKIEFPL--P-DEKTKRRIFNIHTS---RMTLAEDVN---LQELIMA 263 (317)
Q Consensus 198 ~~~~v~vI~tTN~~--~~Ld~al~rpgRf~---~~I~~~~--P-~~~~r~~Il~~~l~---~~~~~~~~~---~~~ia~~ 263 (317)
.|.++.+|+++|.. ..++|+|++ ||+ .+++|+. | +.+.|.++.+...+ +.+..+..+ +..+.+.
T Consensus 265 ip~dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~ 342 (608)
T TIGR00764 265 VPCDFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVRE 342 (608)
T ss_pred CccceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHH
Confidence 45688999999974 579999999 999 7777753 3 56667666554332 221111222 3333321
Q ss_pred ----C---C--CCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhh
Q psy7780 264 ----K---D--DLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYR 306 (317)
Q Consensus 264 ----t---~--g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~ 306 (317)
+ . -.+.++|.+++++|...|..++...|+.+|+.+|++....+
T Consensus 343 ~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~~~ 394 (608)
T TIGR00764 343 AQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAKTL 394 (608)
T ss_pred HHHHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHHHH
Confidence 1 1 24579999999999888878888899999999998866543
No 156
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.02 E-value=1.5e-09 Score=93.77 Aligned_cols=137 Identities=19% Similarity=0.219 Sum_probs=88.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce------------------------EEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT------------------------FLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~------------------------~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||||+|||+ ++|..+... +..+.... . ..+...++++.+.+..
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~~~~ 90 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEFLSR 90 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHHHcc
Confidence 47899999999998 566665321 22222110 0 0123466666766654
Q ss_pred ----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 ----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
....||+|||+|.+... ....|+..++... ....+|++||.
T Consensus 91 ~~~~~~~kviiide~~~l~~~--------------~~~~Ll~~le~~~---------------------~~~~~il~~~~ 135 (188)
T TIGR00678 91 TPQESGRRVVIIEDAERMNEA--------------AANALLKTLEEPP---------------------PNTLFILITPS 135 (188)
T ss_pred CcccCCeEEEEEechhhhCHH--------------HHHHHHHHhcCCC---------------------CCeEEEEEECC
Confidence 23469999999988432 2223455544421 44667777888
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 266 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g 266 (317)
+..|.+++++ |+. .++|++|+.++..++++.. +++ +..+..++..+.|
T Consensus 136 ~~~l~~~i~s--r~~-~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 136 PEKLLPTIRS--RCQ-VLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred hHhChHHHHh--hcE-EeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 8999999999 885 8999999999999988876 232 2235555555554
No 157
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.01 E-value=2.1e-09 Score=112.72 Aligned_cols=176 Identities=23% Similarity=0.269 Sum_probs=111.2
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhh------------hcCCchHHHHHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQK------------YLGDGPKLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~------------~~g~~~~~l~~~f~~a~~~~P~Ii~iD 143 (317)
+.||.||||||||+ ++|..+ +.++++++++++... |+|..+ -..+....+.+..+|||||
T Consensus 597 ~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~--~g~l~~~v~~~p~~vlllD 674 (852)
T TIGR03346 597 SFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEE--GGQLTEAVRRKPYSVVLFD 674 (852)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCccc--ccHHHHHHHcCCCcEEEEe
Confidence 47899999999999 777766 468999999876432 222211 1233344455555899999
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC----------
Q psy7780 144 EIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET---------- 213 (317)
Q Consensus 144 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~---------- 213 (317)
|||.+. ..++..|.+++++ |.-....+.. ..-.+.++|+|||....
T Consensus 675 eieka~-----------~~v~~~Ll~~l~~--g~l~d~~g~~-----------vd~rn~iiI~TSn~g~~~~~~~~~~~~ 730 (852)
T TIGR03346 675 EVEKAH-----------PDVFNVLLQVLDD--GRLTDGQGRT-----------VDFRNTVIIMTSNLGSQFIQELAGGDD 730 (852)
T ss_pred ccccCC-----------HHHHHHHHHHHhc--CceecCCCeE-----------EecCCcEEEEeCCcchHhHhhhccccc
Confidence 999763 3356666666643 1100000000 00156789999998221
Q ss_pred ---------------CCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC-------CCC---cCCCHHHHHHhC--CC
Q psy7780 214 ---------------LDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM-------TLA---EDVNLQELIMAK--DD 266 (317)
Q Consensus 214 ---------------Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~-------~~~---~~~~~~~ia~~t--~g 266 (317)
+.|.|+. |+|.++.|.+++.+...+|+...+... ++. ++...+.+++.. ..
T Consensus 731 ~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~ 808 (852)
T TIGR03346 731 YEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPV 808 (852)
T ss_pred HHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCC
Confidence 3467777 999999999999999999998776421 111 122244455542 25
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy7780 267 LSGADIKAICTEAGLMALR 285 (317)
Q Consensus 267 ~s~~dl~~l~~~A~~~a~~ 285 (317)
+..+.|++++++.....+.
T Consensus 809 ~gaR~L~~~i~~~i~~~l~ 827 (852)
T TIGR03346 809 YGARPLKRAIQREIENPLA 827 (852)
T ss_pred CCchhHHHHHHHHHHHHHH
Confidence 6788888888877655543
No 158
>KOG1514|consensus
Probab=98.97 E-value=1.1e-08 Score=101.45 Aligned_cols=192 Identities=17% Similarity=0.213 Sum_probs=125.9
Q ss_pred hHHHhhhcCCCchh---hhhh---------cC-CceEEEEechhhhh----------hhcCCchH------HHHHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVAN---------QT-SATFLRVVGSELIQ----------KYLGDGPK------LVRELFRVA 132 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~---------~~-~~~~~~v~~s~l~~----------~~~g~~~~------~l~~~f~~a 132 (317)
-.-+.|.||||||. .+-. ++ .+.|++|++-.|.+ .+.|+... .+..-|...
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 45678999999997 2222 22 36889998866543 33444322 222223311
Q ss_pred -HhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC
Q psy7780 133 -EEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI 211 (317)
Q Consensus 133 -~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~ 211 (317)
....|+||+|||+|.|+..+ |.+|..+++....-. .+++||+.+|..
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~-----------QdVlYn~fdWpt~~~---------------------sKLvvi~IaNTm 551 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRS-----------QDVLYNIFDWPTLKN---------------------SKLVVIAIANTM 551 (767)
T ss_pred CCCCCCEEEEeccHHHHhccc-----------HHHHHHHhcCCcCCC---------------------CceEEEEecccc
Confidence 23447999999999999775 567777776532211 568888888876
Q ss_pred CCC----CccccCCCcce-eEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCH--HHHHHHHHHHHHHHH
Q psy7780 212 ETL----DPALIRPGRID-RKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSG--ADIKAICTEAGLMAL 284 (317)
Q Consensus 212 ~~L----d~al~rpgRf~-~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~--~dl~~l~~~A~~~a~ 284 (317)
+.. ..-+.+ |++ .+|.|.+++.++..+|+...+.....-.+...+-+|+.-...|| +-...+|++|...|.
T Consensus 552 dlPEr~l~nrvsS--Rlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~ 629 (767)
T KOG1514|consen 552 DLPERLLMNRVSS--RLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAEIAE 629 (767)
T ss_pred cCHHHHhccchhh--hccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhh
Confidence 643 333334 543 67899999999999999999887632222223333444333333 345578999999888
Q ss_pred HhcC-------CCcCHHHHHHHHHHHHhhh
Q psy7780 285 RERR-------MKVTNEDFKKSKESVLYRK 307 (317)
Q Consensus 285 ~~~~-------~~it~~d~~~al~~v~~~~ 307 (317)
.+.. ..|++.|+.+|+..+....
T Consensus 630 ~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 630 ERNVKGKLAVSQLVGILHVMEAINEMLASP 659 (767)
T ss_pred hhcccccccccceeehHHHHHHHHHHhhhh
Confidence 7665 6799999999999988644
No 159
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.96 E-value=2.6e-10 Score=93.48 Aligned_cols=121 Identities=20% Similarity=0.219 Sum_probs=65.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhh------hhhc---CCchHHHHHHHHHHHhhCCceEeeccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELI------QKYL---GDGPKLVRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~------~~~~---g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
|++++||||||||+ .+|+.++.+++.++++.-. ..|. +...-. ...+-.|.. .++|++|||++..-
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~-~~~l~~a~~-~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFK-DGPLVRAMR-KGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEE-E-CCCTTHH-EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccc-ccccccccc-ceeEEEECCcccCC
Confidence 46899999999999 9999999999999886532 2222 111000 000001111 46899999999763
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHhcCCCcc--cccccchhhhcccccccCCCCeEEEEEcCCCC----CCCccccCCCc
Q psy7780 150 TKRYDSNSGGEREIQRTMLELLNQLDGFDSR--VQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE----TLDPALIRPGR 223 (317)
Q Consensus 150 ~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~--~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~----~Ld~al~rpgR 223 (317)
.++...|..++ +.-.-. ...... ..........++.+|+|+|..+ .+++|+++ |
T Consensus 79 -----------~~v~~~L~~ll---~~~~~~~~~~~~~~----~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--R 138 (139)
T PF07728_consen 79 -----------PEVLESLLSLL---EERRIQLPEGGEEI----KEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--R 138 (139)
T ss_dssp -----------HHHHHTTHHHH---SSSEEEE-TSSSEE----E--TT------EEEEEEESSST--TTTTCHHHHT--T
T ss_pred -----------HHHHHHHHHHH---hhCcccccCCCcEE----ecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--h
Confidence 22344444444 332111 000000 0000000112489999999998 89999999 9
Q ss_pred c
Q psy7780 224 I 224 (317)
Q Consensus 224 f 224 (317)
|
T Consensus 139 f 139 (139)
T PF07728_consen 139 F 139 (139)
T ss_dssp -
T ss_pred C
Confidence 8
No 160
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.96 E-value=1.7e-09 Score=104.06 Aligned_cols=134 Identities=22% Similarity=0.310 Sum_probs=79.7
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc-------eEEEEe----chhhhhhhcCC--c----hHHHHHHHHHHHhh--CCce
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA-------TFLRVV----GSELIQKYLGD--G----PKLVRELFRVAEEH--APSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~-------~~~~v~----~s~l~~~~~g~--~----~~~l~~~f~~a~~~--~P~I 139 (317)
.++|+||||||||+ .+|+.+.. .++.+. ..+++..+.-. + ...+.++...|+.. .|++
T Consensus 196 ~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~v 275 (459)
T PRK11331 196 NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYV 275 (459)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcE
Confidence 77899999999999 66666532 222222 22444333111 1 12344555667653 4899
Q ss_pred EeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhc--ccccccCCCCeEEEEEcCCCC----C
Q psy7780 140 VFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYS--SLTLIYLPGDVKVIMATNRIE----T 213 (317)
Q Consensus 140 i~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~--~~~~~~~~~~v~vI~tTN~~~----~ 213 (317)
|+||||+..... +++-+++..++.-... ....++-.+. +...+..|.++.+|+|+|..+ .
T Consensus 276 liIDEINRani~-------------kiFGel~~lLE~~~rg-~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~ 341 (459)
T PRK11331 276 FIIDEINRANLS-------------KVFGEVMMLMEHDKRG-ENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAV 341 (459)
T ss_pred EEEehhhccCHH-------------Hhhhhhhhhccccccc-cccceeeeccccccccccCCCCeEEEEecCccccchhh
Confidence 999999975322 3444455544421100 0000010011 123578899999999999998 7
Q ss_pred CCccccCCCcceeEEEeCC
Q psy7780 214 LDPALIRPGRIDRKIEFPL 232 (317)
Q Consensus 214 Ld~al~rpgRf~~~I~~~~ 232 (317)
+|.|++| ||. .|++.+
T Consensus 342 lD~AlrR--RF~-fi~i~p 357 (459)
T PRK11331 342 VDYALRR--RFS-FIDIEP 357 (459)
T ss_pred ccHHHHh--hhh-eEEecC
Confidence 9999999 996 566654
No 161
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.95 E-value=3.1e-09 Score=105.52 Aligned_cols=195 Identities=14% Similarity=0.102 Sum_probs=118.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc-eEEEE---echhhhh-----hhcCCchHHHHH-HHHHHHhhCCceEeecccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA-TFLRV---VGSELIQ-----KYLGDGPKLVRE-LFRVAEEHAPSIVFIDEIDAV 148 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~-~~~~v---~~s~l~~-----~~~g~~~~~l~~-~f~~a~~~~P~Ii~iDEiD~l 148 (317)
++|++|+||||||+ ++++.... .|... ++..+.. ...|+. .++. .+..| ...+++|||+|.+
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~--~~~~G~l~~A---~~Gil~iDEi~~l 312 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREF--TLEGGALVLA---DNGVCCIDEFDKM 312 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceE--EecCccEEec---CCCEEEEechhhC
Confidence 68999999999998 67665543 33321 2222211 111110 0000 01111 2369999999987
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-------------CCC
Q psy7780 149 GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-------------TLD 215 (317)
Q Consensus 149 ~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-------------~Ld 215 (317)
-.. .+..|.+.+++ -.-. ....+....++.++.||+|+|..+ .|+
T Consensus 313 ~~~-----------~q~~L~e~me~---~~i~--------i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~ 370 (509)
T smart00350 313 DDS-----------DRTAIHEAMEQ---QTIS--------IAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLP 370 (509)
T ss_pred CHH-----------HHHHHHHHHhc---CEEE--------EEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCC
Confidence 432 34555555543 1100 001122344557899999999863 599
Q ss_pred ccccCCCcceeEE-EeCCCCHHHHHHHHHHHhcCCC---------C--------------------CcCCC---HHHHHH
Q psy7780 216 PALIRPGRIDRKI-EFPLPDEKTKRRIFNIHTSRMT---------L--------------------AEDVN---LQELIM 262 (317)
Q Consensus 216 ~al~rpgRf~~~I-~~~~P~~~~r~~Il~~~l~~~~---------~--------------------~~~~~---~~~ia~ 262 (317)
+++++ |||... ....|+.+...+|.+..+.... . .+.+. .+.+.+
T Consensus 371 ~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~ 448 (509)
T smart00350 371 APILS--RFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVK 448 (509)
T ss_pred hHHhC--ceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 99999 998754 4478999999998877532110 0 00000 010100
Q ss_pred -----h----------CCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q psy7780 263 -----A----------KDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 263 -----~----------t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~ 305 (317)
+ ..+.|++.+..+++-|...|.-+.+..|+.+|+..|++-+..
T Consensus 449 ~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~~ 506 (509)
T smart00350 449 AYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRE 506 (509)
T ss_pred HHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHH
Confidence 1 125689999999999999999999999999999999986643
No 162
>KOG0741|consensus
Probab=98.95 E-value=1.8e-09 Score=103.90 Aligned_cols=139 Identities=18% Similarity=0.233 Sum_probs=95.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechh-hhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSE-LIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNS 157 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~-l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~ 157 (317)
..||+||||+|||. .+|...+.||+.+-.++ ++.......-..++.+|+.|++..-+||++|+|+.|..=- .
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~v----p 615 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYV----P 615 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccc----c
Confidence 57899999999999 88999999999986654 3332212223469999999999988999999999986321 1
Q ss_pred CchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCc-cccCCCcceeEEEeCCCCH-
Q psy7780 158 GGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDP-ALIRPGRIDRKIEFPLPDE- 235 (317)
Q Consensus 158 ~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~-al~rpgRf~~~I~~~~P~~- 235 (317)
-+.+....++..|+..+...... +.+.+|++||.+.+.|.. .++. +|+..|++|..+.
T Consensus 616 IGPRfSN~vlQaL~VllK~~ppk------------------g~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl~~~ 675 (744)
T KOG0741|consen 616 IGPRFSNLVLQALLVLLKKQPPK------------------GRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNLTTG 675 (744)
T ss_pred cCchhhHHHHHHHHHHhccCCCC------------------CceEEEEecccHHHHHHHcCHHH--hhhheeecCccCch
Confidence 11111122333444444444333 146778888887766654 4667 8999999998865
Q ss_pred HHHHHHHHH
Q psy7780 236 KTKRRIFNI 244 (317)
Q Consensus 236 ~~r~~Il~~ 244 (317)
++-.+++..
T Consensus 676 ~~~~~vl~~ 684 (744)
T KOG0741|consen 676 EQLLEVLEE 684 (744)
T ss_pred HHHHHHHHH
Confidence 666666654
No 163
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.93 E-value=7.3e-09 Score=108.53 Aligned_cols=177 Identities=23% Similarity=0.266 Sum_probs=105.1
Q ss_pred hhHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhh-----hcCCchHH----HHHHHHHH-HhhCCceEeecc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQK-----YLGDGPKL----VRELFRVA-EEHAPSIVFIDE 144 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~-----~~g~~~~~----l~~~f~~a-~~~~P~Ii~iDE 144 (317)
|+.||.||||||||+ ++|+.+ +.+|+.++++++... .+|..+.. -...+..+ +....++|+|||
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDE 678 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDE 678 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEee
Confidence 357999999999999 888766 457999999886542 12211000 01122333 333348999999
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-------------
Q psy7780 145 IDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI------------- 211 (317)
Q Consensus 145 iD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~------------- 211 (317)
+|.+. ..++..|.++++. |.-....+.. ....+.++|+|||..
T Consensus 679 ieka~-----------~~v~~~Ll~ile~--g~l~d~~gr~-----------vd~rn~iiI~TSN~g~~~~~~~~~~~~~ 734 (857)
T PRK10865 679 VEKAH-----------PDVFNILLQVLDD--GRLTDGQGRT-----------VDFRNTVVIMTSNLGSDLIQERFGELDY 734 (857)
T ss_pred hhhCC-----------HHHHHHHHHHHhh--CceecCCceE-----------EeecccEEEEeCCcchHHHHHhccccch
Confidence 98763 2345666666643 1100000000 001456789999973
Q ss_pred ------------CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC-------CCCcCCC---HHHHHHhC--CCC
Q psy7780 212 ------------ETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM-------TLAEDVN---LQELIMAK--DDL 267 (317)
Q Consensus 212 ------------~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~-------~~~~~~~---~~~ia~~t--~g~ 267 (317)
..+.|+|+. |+|..+.|.+++.+...+|++.++.+. ++.-.++ ++.++... ..+
T Consensus 735 ~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~ 812 (857)
T PRK10865 735 AHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVY 812 (857)
T ss_pred HHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccC
Confidence 124578888 999999999999999999988876542 1111122 33344321 123
Q ss_pred CHHHHHHHHHHHHHHH
Q psy7780 268 SGADIKAICTEAGLMA 283 (317)
Q Consensus 268 s~~dl~~l~~~A~~~a 283 (317)
-.+.|+++++.-....
T Consensus 813 GARpL~r~I~~~i~~~ 828 (857)
T PRK10865 813 GARPLKRAIQQQIENP 828 (857)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 3567777777654433
No 164
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.92 E-value=5.7e-09 Score=109.20 Aligned_cols=171 Identities=20% Similarity=0.229 Sum_probs=106.6
Q ss_pred HHHhhhcCCCchh---hhhhcC---CceEEEEechhhhh-----h-------hcCCchHHHHHHHHHHHhhCCceEeecc
Q psy7780 83 ELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQ-----K-------YLGDGPKLVRELFRVAEEHAPSIVFIDE 144 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~-----~-------~~g~~~~~l~~~f~~a~~~~P~Ii~iDE 144 (317)
.||.||||||||+ ++|+.+ +.++++++++++.. + |+|..+ ...+.+..+.+..+||+|||
T Consensus 542 ~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDe 619 (821)
T CHL00095 542 FLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDE 619 (821)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECC
Confidence 6899999999999 888876 46899999887643 2 333222 22345555555558999999
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC-----------
Q psy7780 145 IDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET----------- 213 (317)
Q Consensus 145 iD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~----------- 213 (317)
+|... .++.+.|.++++. |.-....+.. ..-.+.++|+|||....
T Consensus 620 ieka~-----------~~v~~~Llq~le~--g~~~d~~g~~-----------v~~~~~i~I~Tsn~g~~~i~~~~~~~gf 675 (821)
T CHL00095 620 IEKAH-----------PDIFNLLLQILDD--GRLTDSKGRT-----------IDFKNTLIIMTSNLGSKVIETNSGGLGF 675 (821)
T ss_pred hhhCC-----------HHHHHHHHHHhcc--CceecCCCcE-----------EecCceEEEEeCCcchHHHHhhccccCC
Confidence 99763 2345555555543 1110000000 00167889999985311
Q ss_pred --------------------------CCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC-------C--CC-cCCCH
Q psy7780 214 --------------------------LDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM-------T--LA-EDVNL 257 (317)
Q Consensus 214 --------------------------Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~-------~--~~-~~~~~ 257 (317)
+.|.++. |+|.+|.|.+.+.++..+|++..+.+. + +. ++...
T Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~ 753 (821)
T CHL00095 676 ELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIK 753 (821)
T ss_pred cccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHH
Confidence 2356788 999999999999999999998876542 1 11 11223
Q ss_pred HHHHHh--CCCCCHHHHHHHHHHHHH
Q psy7780 258 QELIMA--KDDLSGADIKAICTEAGL 281 (317)
Q Consensus 258 ~~ia~~--t~g~s~~dl~~l~~~A~~ 281 (317)
+.++.. ...+-.+.|+.+++.-..
T Consensus 754 ~~La~~~~~~~~GAR~l~r~i~~~i~ 779 (821)
T CHL00095 754 TLLIEEGYNPLYGARPLRRAIMRLLE 779 (821)
T ss_pred HHHHHhcCCCCCChhhHHHHHHHHHH
Confidence 445554 223446667777665443
No 165
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.89 E-value=1.9e-08 Score=89.40 Aligned_cols=155 Identities=20% Similarity=0.243 Sum_probs=101.9
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCchHHHHHHHHHHHhh-CCceEeecccccccccccC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH-APSIVFIDEIDAVGTKRYD 154 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~-~P~Ii~iDEiD~l~~~r~~ 154 (317)
++|++|..|||||+ ++.++. |..++.|.-.+|. .+-++++..+.. .+-|||+|++- +..
T Consensus 54 nvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~---------~l~~l~~~l~~~~~kFIlf~DDLs--Fe~--- 119 (249)
T PF05673_consen 54 NVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG---------DLPELLDLLRDRPYKFILFCDDLS--FEE--- 119 (249)
T ss_pred ceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc---------cHHHHHHHHhcCCCCEEEEecCCC--CCC---
Confidence 78999999999999 666644 6788888877653 344566655532 35799999864 221
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCc------------------
Q psy7780 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDP------------------ 216 (317)
Q Consensus 155 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~------------------ 216 (317)
... ....|-..|||--.. -|.+|++.+|+||-..+++
T Consensus 120 -~d~-------~yk~LKs~LeGgle~-----------------~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~ 174 (249)
T PF05673_consen 120 -GDT-------EYKALKSVLEGGLEA-----------------RPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDT 174 (249)
T ss_pred -CcH-------HHHHHHHHhcCcccc-----------------CCCcEEEEEecchhhccchhhhhccCCCccccCcchH
Confidence 111 123444445553222 1478999999999665543
Q ss_pred -----cccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcC-CCHH----HHHHhCCCCCHHHHHHHHH
Q psy7780 217 -----ALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAED-VNLQ----ELIMAKDDLSGADIKAICT 277 (317)
Q Consensus 217 -----al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~-~~~~----~ia~~t~g~s~~dl~~l~~ 277 (317)
+|.. ||...|.|..|+.++=.+|++.++.+.++.-+ ..+. ..|..-.|.||+--++.+.
T Consensus 175 ~eEklSLsD--RFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 175 IEEKLSLSD--RFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSGRTARQFID 243 (249)
T ss_pred HHHHHhHHH--hCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 2445 89999999999999999999999987655422 1121 1223345566666655554
No 166
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.88 E-value=1.5e-08 Score=94.41 Aligned_cols=122 Identities=24% Similarity=0.272 Sum_probs=85.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCC------------------------ceEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS------------------------ATFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~------------------------~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
..||+||||+|||+ ++|+++. -.++.++.++....- .....++++-+....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~ 103 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSE 103 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhcc
Confidence 48999999999999 8888887 478888887743311 124455555444433
Q ss_pred h----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 H----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
. ..-||+|||+|.+... .+..+...+++ .. .+..+|.+||+
T Consensus 104 ~~~~~~~kviiidead~mt~~-----------A~nallk~lEe---p~---------------------~~~~~il~~n~ 148 (325)
T COG0470 104 SPLEGGYKVVIIDEADKLTED-----------AANALLKTLEE---PP---------------------KNTRFILITND 148 (325)
T ss_pred CCCCCCceEEEeCcHHHHhHH-----------HHHHHHHHhcc---CC---------------------CCeEEEEEcCC
Confidence 2 2469999999998542 23344444433 22 56789999999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHH
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFN 243 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~ 243 (317)
++.+-+.+++ |+. .+.|++|+...+....+
T Consensus 149 ~~~il~tI~S--Rc~-~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 149 PSKILPTIRS--RCQ-RIRFKPPSRLEAIAWLE 178 (325)
T ss_pred hhhccchhhh--cce-eeecCCchHHHHHHHhh
Confidence 9999999999 995 88888876655555444
No 167
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.88 E-value=1.6e-08 Score=99.81 Aligned_cols=140 Identities=19% Similarity=0.304 Sum_probs=87.8
Q ss_pred ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-----C
Q psy7780 138 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-----E 212 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-----~ 212 (317)
.+|||||++.+.. ..+..|.+.|+.- .+.-. ........+.++.+|+++|.- .
T Consensus 297 GvLfLDEi~e~~~-----------~~~~~L~~~LE~~-~v~i~----------r~g~~~~~pa~frlIaa~Npcpcg~~~ 354 (499)
T TIGR00368 297 GVLFLDELPEFKR-----------SVLDALREPIEDG-SISIS----------RASAKIFYPARFQLVAAMNPCPCGHYG 354 (499)
T ss_pred CeEecCChhhCCH-----------HHHHHHHHHHHcC-cEEEE----------ecCcceeccCCeEEEEecCCcccCcCC
Confidence 6999999997632 3456666665431 10000 001112244689999999963 1
Q ss_pred ------------------CCCccccCCCcceeEEEeCCCCHH-------------HHHHHHHHH------hcCC---CCC
Q psy7780 213 ------------------TLDPALIRPGRIDRKIEFPLPDEK-------------TKRRIFNIH------TSRM---TLA 252 (317)
Q Consensus 213 ------------------~Ld~al~rpgRf~~~I~~~~P~~~-------------~r~~Il~~~------l~~~---~~~ 252 (317)
.|...|++ |||..+.++.++.+ -|..+.+.. ++.. .+.
T Consensus 355 ~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N 432 (499)
T TIGR00368 355 GKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYEKFANINKN 432 (499)
T ss_pred CCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhcCCCCCccc
Confidence 48889999 99999999976433 223333221 1111 111
Q ss_pred cCCCH-------------HH---HHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q psy7780 253 EDVNL-------------QE---LIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKE 301 (317)
Q Consensus 253 ~~~~~-------------~~---ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~ 301 (317)
..... .+ -+....++|.+-...+++-|...|--++...|+.+|+.+|+.
T Consensus 433 ~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 433 ADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred ccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 11111 11 112235689999999999999999999999999999999975
No 168
>KOG1969|consensus
Probab=98.87 E-value=4.3e-08 Score=97.70 Aligned_cols=177 Identities=19% Similarity=0.210 Sum_probs=107.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHh--------hCCceEeecccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE--------HAPSIVFIDEIDAVGT 150 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~--------~~P~Ii~iDEiD~l~~ 150 (317)
..||+||||-|||| .+|+++|+.+++|++|+= .+...+++-...|-+ .+|..+++||||--.
T Consensus 328 ilLL~GppGlGKTTLAHViAkqaGYsVvEINASDe------Rt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~- 400 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDE------RTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP- 400 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhcCceEEEeccccc------ccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc-
Confidence 46899999999999 999999999999999984 334555555554432 459999999999422
Q ss_pred cccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhh--cccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEE
Q psy7780 151 KRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVY--SSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKI 228 (317)
Q Consensus 151 ~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~--~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I 228 (317)
.....++..++..-.... .+++..... ++.....+. .-+|+.+|.. --|||+.---|-..|
T Consensus 401 ----------~~~Vdvilslv~a~~k~~---~Gkq~~~~~~rkkkr~~~L~--RPIICICNdL--YaPaLR~Lr~~A~ii 463 (877)
T KOG1969|consen 401 ----------RAAVDVILSLVKATNKQA---TGKQAKKDKKRKKKRSKLLT--RPIICICNDL--YAPALRPLRPFAEII 463 (877)
T ss_pred ----------HHHHHHHHHHHHhhcchh---hcCcccchhhhhhhcccccc--CCEEEEecCc--cchhhhhcccceEEE
Confidence 234455555555211110 011110000 111112222 2377888864 346664211477899
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q psy7780 229 EFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRE 286 (317)
Q Consensus 229 ~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~ 286 (317)
+|++|...-..+=|+....+.++. +.-.+..+++.|. .||++.++.-.+.+...
T Consensus 464 ~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~----~DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 464 AFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQ----NDIRSCINTLQFLASNV 518 (877)
T ss_pred EecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhc----chHHHHHHHHHHHHHhc
Confidence 999998776666665555444433 2223555666554 49999998777666544
No 169
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=2.6e-09 Score=108.58 Aligned_cols=171 Identities=22% Similarity=0.303 Sum_probs=113.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCC---ceEEEEechhhhhh------------hcCCchHHHHHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS---ATFLRVVGSELIQK------------YLGDGPKLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~---~~~~~v~~s~l~~~------------~~g~~~~~l~~~f~~a~~~~P~Ii~iD 143 (317)
..||.||.|+|||- ++|..+. -.++++++|+.+.+ |+|..+.- .+-+..+++..|||+||
T Consensus 523 sFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG--~LTEaVRr~PySViLlD 600 (786)
T COG0542 523 SFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGG--QLTEAVRRKPYSVILLD 600 (786)
T ss_pred EEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceecccc--chhHhhhcCCCeEEEec
Confidence 45899999999998 9999997 89999999998764 66655421 23344455556999999
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC----------
Q psy7780 144 EIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET---------- 213 (317)
Q Consensus 144 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~---------- 213 (317)
||+.-.+ .+..+|.|.|+. |.-....+..+.+ .+.++|+|||--..
T Consensus 601 EIEKAHp-----------dV~nilLQVlDd--GrLTD~~Gr~VdF-----------rNtiIImTSN~Gs~~i~~~~~~~~ 656 (786)
T COG0542 601 EIEKAHP-----------DVFNLLLQVLDD--GRLTDGQGRTVDF-----------RNTIIIMTSNAGSEEILRDADGDD 656 (786)
T ss_pred hhhhcCH-----------HHHHHHHHHhcC--CeeecCCCCEEec-----------ceeEEEEecccchHHHHhhccccc
Confidence 9997643 344555554431 3222222222221 67899999985211
Q ss_pred ------------------CCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCC---------CC-cCCCHHHHHHhC-
Q psy7780 214 ------------------LDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMT---------LA-EDVNLQELIMAK- 264 (317)
Q Consensus 214 ------------------Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~---------~~-~~~~~~~ia~~t- 264 (317)
..|+++. |+|.+|.|.+.+.+...+|+...+.++. +. ++.-.+.++...
T Consensus 657 ~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gy 734 (786)
T COG0542 657 FADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGY 734 (786)
T ss_pred cchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhcc
Confidence 3577888 9999999999999999999988875431 11 112234455543
Q ss_pred -CCCCHHHHHHHHHHHH
Q psy7780 265 -DDLSGADIKAICTEAG 280 (317)
Q Consensus 265 -~g~s~~dl~~l~~~A~ 280 (317)
..|-++-|++++++-.
T Consensus 735 d~~~GARpL~R~Iq~~i 751 (786)
T COG0542 735 DPEYGARPLRRAIQQEI 751 (786)
T ss_pred CCCcCchHHHHHHHHHH
Confidence 2455666777766543
No 170
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=1.7e-08 Score=95.48 Aligned_cols=116 Identities=15% Similarity=0.142 Sum_probs=73.5
Q ss_pred HHHHHHHHHHH----hhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccC
Q psy7780 123 KLVRELFRVAE----EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYL 198 (317)
Q Consensus 123 ~~l~~~f~~a~----~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~ 198 (317)
..+|++-+... ....-|++|||+|.+... ..+. +|..++...
T Consensus 124 d~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~-----------aana---LLk~LEEpp-------------------- 169 (351)
T PRK09112 124 DEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN-----------AANA---ILKTLEEPP-------------------- 169 (351)
T ss_pred HHHHHHHHHhhhccccCCceEEEEEchhhcCHH-----------HHHH---HHHHHhcCC--------------------
Confidence 34555444333 233569999999998432 1233 444443322
Q ss_pred CCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHH
Q psy7780 199 PGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTE 278 (317)
Q Consensus 199 ~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~ 278 (317)
.+.++|..|+.++.+.|.+++ |+ ..+.|++|+.++-.++++.......++ +..+..+++.+.| +++...+++..
T Consensus 170 -~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~~~~~~~~-~~~~~~i~~~s~G-~pr~Al~ll~~ 243 (351)
T PRK09112 170 -ARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHLGSSQGSD-GEITEALLQRSKG-SVRKALLLLNY 243 (351)
T ss_pred -CCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHhhcccCCC-HHHHHHHHHHcCC-CHHHHHHHHhc
Confidence 446677778889999999999 99 599999999999999998743222211 2224566666666 56555555543
No 171
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=2.1e-08 Score=95.34 Aligned_cols=111 Identities=15% Similarity=0.173 Sum_probs=72.4
Q ss_pred HHHHHHHHHHH----hhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccC
Q psy7780 123 KLVRELFRVAE----EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYL 198 (317)
Q Consensus 123 ~~l~~~f~~a~----~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~ 198 (317)
..+|++-+.+. ...|-|++|||+|.+... ..+.|...+++ ..
T Consensus 124 dqiR~l~~~~~~~~~~~~~kVviIDead~m~~~-----------aanaLLK~LEe---pp-------------------- 169 (365)
T PRK07471 124 DEVRELISFFGLTAAEGGWRVVIVDTADEMNAN-----------AANALLKVLEE---PP-------------------- 169 (365)
T ss_pred HHHHHHHHHhCcCcccCCCEEEEEechHhcCHH-----------HHHHHHHHHhc---CC--------------------
Confidence 44666555543 344779999999987322 23444444443 21
Q ss_pred CCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHH
Q psy7780 199 PGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275 (317)
Q Consensus 199 ~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l 275 (317)
.+.++|.+|+.++.+.+.+++ |+. .+.|++|+.++-.+++....... .+..+..++..+.| +++...++
T Consensus 170 -~~~~~IL~t~~~~~llpti~S--Rc~-~i~l~~l~~~~i~~~L~~~~~~~---~~~~~~~l~~~s~G-sp~~Al~l 238 (365)
T PRK07471 170 -ARSLFLLVSHAPARLLPTIRS--RCR-KLRLRPLAPEDVIDALAAAGPDL---PDDPRAALAALAEG-SVGRALRL 238 (365)
T ss_pred -CCeEEEEEECCchhchHHhhc--cce-EEECCCCCHHHHHHHHHHhcccC---CHHHHHHHHHHcCC-CHHHHHHH
Confidence 457788899999999999999 985 89999999999999998764221 11112456666666 44443333
No 172
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=2.1e-08 Score=94.15 Aligned_cols=143 Identities=17% Similarity=0.232 Sum_probs=92.0
Q ss_pred hhhHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHH
Q psy7780 80 VGSELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVA 132 (317)
Q Consensus 80 ~g~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a 132 (317)
...+||+||+|+|||+ ++|+.+.+ .++.+....- + ...+-..+|++.+.+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~--~~i~id~iR~l~~~~ 98 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-D--KTIKVDQVRELVSFV 98 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-C--CCCCHHHHHHHHHHH
Confidence 3368999999999998 55555543 2333322100 0 012345677776665
Q ss_pred Hh----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEc
Q psy7780 133 EE----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMAT 208 (317)
Q Consensus 133 ~~----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tT 208 (317)
.. ...-|++||++|.+... ..+.|...|++ -. +++++|.+|
T Consensus 99 ~~~~~~~~~kv~iI~~a~~m~~~-----------aaNaLLK~LEE---Pp---------------------~~~~fiL~t 143 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAEAMNRN-----------AANALLKSLEE---PS---------------------GDTVLLLIS 143 (328)
T ss_pred hhccccCCCeEEEECChhhCCHH-----------HHHHHHHHHhC---CC---------------------CCeEEEEEE
Confidence 43 23468999999988432 23444444444 21 568899999
Q ss_pred CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCC
Q psy7780 209 NRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 266 (317)
Q Consensus 209 N~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g 266 (317)
+.++.|.|.+++ |+. .+.|++|+.++..+.+...... ..+.+...++..+.|
T Consensus 144 ~~~~~ll~TI~S--Rc~-~~~~~~~~~~~~~~~L~~~~~~---~~~~~~~~~l~la~G 195 (328)
T PRK05707 144 HQPSRLLPTIKS--RCQ-QQACPLPSNEESLQWLQQALPE---SDERERIELLTLAGG 195 (328)
T ss_pred CChhhCcHHHHh--hce-eeeCCCcCHHHHHHHHHHhccc---CChHHHHHHHHHcCC
Confidence 999999999999 996 6999999999888888765421 112223445556665
No 173
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.79 E-value=4.4e-09 Score=89.66 Aligned_cols=116 Identities=21% Similarity=0.179 Sum_probs=67.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCc----eEEEEechhhhhhhcCCchHHHHHHHHHH----HhhCCceEeeccccccccc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSA----TFLRVVGSELIQKYLGDGPKLVRELFRVA----EEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~----~~~~v~~s~l~~~~~g~~~~~l~~~f~~a----~~~~P~Ii~iDEiD~l~~~ 151 (317)
.||.||+|||||. ++|+.+.. +++.++++++... ++.+..+..++..+ ......||||||||.+.+.
T Consensus 6 ~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~~ 83 (171)
T PF07724_consen 6 FLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHPS 83 (171)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhcccc
Confidence 4789999999997 99999996 9999999998661 11222333333321 1111249999999999886
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC
Q psy7780 152 RYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET 213 (317)
Q Consensus 152 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~ 213 (317)
.+...+-....+++.|+++++ +-.-... .. ....-.++++|+|+|--..
T Consensus 84 ~~~~~~v~~~~V~~~LL~~le---~g~~~d~--~g--------~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 84 NSGGADVSGEGVQNSLLQLLE---GGTLTDS--YG--------RTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp TTTCSHHHHHHHHHHHHHHHH---HSEEEET--TC--------CEEEGTTEEEEEEESSSTH
T ss_pred ccccchhhHHHHHHHHHHHhc---ccceecc--cc--------eEEEeCCceEEEecccccc
Confidence 322112222344555555554 3211100 00 0011178999999997543
No 174
>KOG0991|consensus
Probab=98.78 E-value=7.2e-09 Score=90.76 Aligned_cols=163 Identities=15% Similarity=0.258 Sum_probs=94.8
Q ss_pred ccCCCceEeechh------------------hHHHhhhcCCCchh---hhhhcC-C----ceEEEEechhhhhhhcCCch
Q psy7780 69 ANQTSATFLRVVG------------------SELIQKYLGDGPKL---AVANQT-S----ATFLRVVGSELIQKYLGDGP 122 (317)
Q Consensus 69 ~~~~~~~~~~i~g------------------~~Ll~G~pGtGKT~---aiA~~~-~----~~~~~v~~s~l~~~~~g~~~ 122 (317)
++.++..+.||+| +.+|.||||||||+ ++|+++ | --+.++++|+=.+- +.-
T Consensus 19 eKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGI---DvV 95 (333)
T KOG0991|consen 19 EKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGI---DVV 95 (333)
T ss_pred HhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccccc---HHH
Confidence 3446667777777 56899999999999 888887 2 24677777763210 112
Q ss_pred HHHHHHHHHHHhhC-C---ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccC
Q psy7780 123 KLVRELFRVAEEHA-P---SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYL 198 (317)
Q Consensus 123 ~~l~~~f~~a~~~~-P---~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~ 198 (317)
++--+.|.+-+-.- | -||++||+|+... +. ++.+..-++...
T Consensus 96 Rn~IK~FAQ~kv~lp~grhKIiILDEADSMT~-------gA----QQAlRRtMEiyS----------------------- 141 (333)
T KOG0991|consen 96 RNKIKMFAQKKVTLPPGRHKIIILDEADSMTA-------GA----QQALRRTMEIYS----------------------- 141 (333)
T ss_pred HHHHHHHHHhhccCCCCceeEEEeeccchhhh-------HH----HHHHHHHHHHHc-----------------------
Confidence 22233454433222 2 4999999998742 22 233333332211
Q ss_pred CCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHh--cCCCCCcCCCHHHHHHhCCCCCHHHHHHHH
Q psy7780 199 PGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHT--SRMTLAEDVNLQELIMAKDDLSGADIKAIC 276 (317)
Q Consensus 199 ~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l--~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~ 276 (317)
+...+..++|..+.|=+.+.+ |+- .+.|...+..+...=+.... .+.+.. +.-++.+.-..+| |+++.+
T Consensus 142 -~ttRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt-~dgLeaiifta~G----DMRQal 212 (333)
T KOG0991|consen 142 -NTTRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKVNYT-DDGLEAIIFTAQG----DMRQAL 212 (333)
T ss_pred -ccchhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCCCCC-cchHHHhhhhccc----hHHHHH
Confidence 223377889999988888888 875 66777766655444333332 233332 3346666666555 555444
Q ss_pred H
Q psy7780 277 T 277 (317)
Q Consensus 277 ~ 277 (317)
+
T Consensus 213 N 213 (333)
T KOG0991|consen 213 N 213 (333)
T ss_pred H
Confidence 4
No 175
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.76 E-value=7.2e-08 Score=94.93 Aligned_cols=141 Identities=16% Similarity=0.183 Sum_probs=86.8
Q ss_pred ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----
Q psy7780 138 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE----- 212 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~----- 212 (317)
-++|+||++.+-. ..+..|.+.|+.= .+.- .........|.++.+|+|+|...
T Consensus 296 GvLfLDEi~e~~~-----------~~~~~L~~~LE~g-~v~I----------~r~g~~~~~pa~f~lIAa~NP~pcG~~~ 353 (506)
T PRK09862 296 GVLFLDELPEFER-----------RTLDALREPIESG-QIHL----------SRTRAKITYPARFQLVAAMNPSPTGHYQ 353 (506)
T ss_pred CEEecCCchhCCH-----------HHHHHHHHHHHcC-cEEE----------ecCCcceeccCCEEEEEeecCccceecC
Confidence 5999999987532 2345555555331 1100 00111223457899999999853
Q ss_pred ----------------CCCccccCCCcceeEEEeCCCCHHH----------HHHHHHHHh--------cCCCCCcCCCHH
Q psy7780 213 ----------------TLDPALIRPGRIDRKIEFPLPDEKT----------KRRIFNIHT--------SRMTLAEDVNLQ 258 (317)
Q Consensus 213 ----------------~Ld~al~rpgRf~~~I~~~~P~~~~----------r~~Il~~~l--------~~~~~~~~~~~~ 258 (317)
.|+.++++ |||..+.++.|+.++ +..|-+... ++-.+.....-.
T Consensus 354 ~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~n~~l~~~ 431 (506)
T PRK09862 354 GNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSP 431 (506)
T ss_pred CCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHHhcccCHH
Confidence 47779999 999999999884321 111221110 000001111111
Q ss_pred H----------------HHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHH
Q psy7780 259 E----------------LIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKES 302 (317)
Q Consensus 259 ~----------------ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~ 302 (317)
. -+....|+|++....+++-|...|.-+++..|+.+|+.+|+.-
T Consensus 432 ~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~y 491 (506)
T PRK09862 432 EIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVSY 491 (506)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 1 1123357899999999999999999999999999999999863
No 176
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.67 E-value=1.2e-07 Score=86.91 Aligned_cols=185 Identities=17% Similarity=0.242 Sum_probs=112.0
Q ss_pred HHHhhhcCCCchh---hhhh------c---CCceEEEEechh----------hhhh----h--cCCchHHHHHHHHHHHh
Q psy7780 83 ELIQKYLGDGPKL---AVAN------Q---TSATFLRVVGSE----------LIQK----Y--LGDGPKLVRELFRVAEE 134 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~------~---~~~~~~~v~~s~----------l~~~----~--~g~~~~~l~~~f~~a~~ 134 (317)
.|++|++|.|||+ ..+. . ..++++.+.+.. ++.. + .....+.-..+....+.
T Consensus 64 lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~ 143 (302)
T PF05621_consen 64 LLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRR 143 (302)
T ss_pred eEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999 1111 1 124777775522 1111 1 11112333344566677
Q ss_pred hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC--
Q psy7780 135 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-- 212 (317)
Q Consensus 135 ~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-- 212 (317)
..+-+|+|||++.++..+ ..-++.+..+|..+..-- .-.++.+||-.-..
T Consensus 144 ~~vrmLIIDE~H~lLaGs--------~~~qr~~Ln~LK~L~NeL--------------------~ipiV~vGt~~A~~al 195 (302)
T PF05621_consen 144 LGVRMLIIDEFHNLLAGS--------YRKQREFLNALKFLGNEL--------------------QIPIVGVGTREAYRAL 195 (302)
T ss_pred cCCcEEEeechHHHhccc--------HHHHHHHHHHHHHHhhcc--------------------CCCeEEeccHHHHHHh
Confidence 888999999999976432 112344444444432111 13455555542222
Q ss_pred CCCccccCCCcceeEEEeCCCC-HHHHHHHHHHHhcCCCCC--cCCCHH----HHHHhCCCCCHHHHHHHHHHHHHHHHH
Q psy7780 213 TLDPALIRPGRIDRKIEFPLPD-EKTKRRIFNIHTSRMTLA--EDVNLQ----ELIMAKDDLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 213 ~Ld~al~rpgRf~~~I~~~~P~-~~~r~~Il~~~l~~~~~~--~~~~~~----~ia~~t~g~s~~dl~~l~~~A~~~a~~ 285 (317)
.-|+.+-+ ||+ .+.+|... -++-..++..+-..+++. +...-. .|-..++|.+ +++.++++.|+..|++
T Consensus 196 ~~D~QLa~--RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i-G~l~~ll~~aA~~AI~ 271 (302)
T PF05621_consen 196 RTDPQLAS--RFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI-GELSRLLNAAAIAAIR 271 (302)
T ss_pred ccCHHHHh--ccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHh
Confidence 24778888 997 66777653 244456777776666554 233333 3445577855 4888999999999999
Q ss_pred hcCCCcCHHHHHHH
Q psy7780 286 ERRMKVTNEDFKKS 299 (317)
Q Consensus 286 ~~~~~it~~d~~~a 299 (317)
.+.+.||.+.+..+
T Consensus 272 sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 272 SGEERITREILDKI 285 (302)
T ss_pred cCCceecHHHHhhC
Confidence 99999999998653
No 177
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=5.7e-08 Score=90.68 Aligned_cols=140 Identities=11% Similarity=0.169 Sum_probs=88.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc--------eEEEEechhhhhhhcCCchHHHHHHHHHHHh----hCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA--------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE----HAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~--------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~----~~P~Ii~iDEiD 146 (317)
.+||+||+|+|||+ ++|+.+-+ .++.+...+ + ...+-..++++.+.+.. ...-|++||++|
T Consensus 28 a~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~--~--~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad 103 (313)
T PRK05564 28 AHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN--K--KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSE 103 (313)
T ss_pred eEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc--C--CCCCHHHHHHHHHHHhcCcccCCceEEEEechh
Confidence 56899999999999 66665432 233332210 0 11123457776665432 224599999998
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCccee
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDR 226 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~ 226 (317)
.+... ..+ .+|..++... .++++|.+|+.++.+.|.+++ |+.
T Consensus 104 ~m~~~-----------a~n---aLLK~LEepp---------------------~~t~~il~~~~~~~ll~TI~S--Rc~- 145 (313)
T PRK05564 104 KMTEQ-----------AQN---AFLKTIEEPP---------------------KGVFIILLCENLEQILDTIKS--RCQ- 145 (313)
T ss_pred hcCHH-----------HHH---HHHHHhcCCC---------------------CCeEEEEEeCChHhCcHHHHh--hce-
Confidence 87321 233 4444444321 556777777889999999999 995
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCC
Q psy7780 227 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 266 (317)
Q Consensus 227 ~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g 266 (317)
.++|+.|+.++....++...... . ...+..++..+.|
T Consensus 146 ~~~~~~~~~~~~~~~l~~~~~~~--~-~~~~~~l~~~~~g 182 (313)
T PRK05564 146 IYKLNRLSKEEIEKFISYKYNDI--K-EEEKKSAIAFSDG 182 (313)
T ss_pred eeeCCCcCHHHHHHHHHHHhcCC--C-HHHHHHHHHHcCC
Confidence 89999999999888887655322 1 2224455556555
No 178
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=1e-07 Score=89.05 Aligned_cols=112 Identities=18% Similarity=0.278 Sum_probs=74.8
Q ss_pred HHHHHHHHHHh----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCC
Q psy7780 124 LVRELFRVAEE----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLP 199 (317)
Q Consensus 124 ~l~~~f~~a~~----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 199 (317)
.+|++-+.+.. ....|++||++|.+... ..+.|...|++ .
T Consensus 108 ~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~-----------aaNaLLK~LEE---P---------------------- 151 (314)
T PRK07399 108 QIREIKRFLSRPPLEAPRKVVVIEDAETMNEA-----------AANALLKTLEE---P---------------------- 151 (314)
T ss_pred HHHHHHHHHccCcccCCceEEEEEchhhcCHH-----------HHHHHHHHHhC---C----------------------
Confidence 56666655543 23469999999988432 23445555544 2
Q ss_pred CCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHH
Q psy7780 200 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 277 (317)
Q Consensus 200 ~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~ 277 (317)
++.++|..|+.++.|-|.+++ |+. .+.|++|+.++..++++....... .+.+...++....| +++...++++
T Consensus 152 p~~~fILi~~~~~~Ll~TI~S--Rcq-~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 152 GNGTLILIAPSPESLLPTIVS--RCQ-IIPFYRLSDEQLEQVLKRLGDEEI--LNINFPELLALAQG-SPGAAIANIE 223 (314)
T ss_pred CCCeEEEEECChHhCcHHHHh--hce-EEecCCCCHHHHHHHHHHhhcccc--chhHHHHHHHHcCC-CHHHHHHHHH
Confidence 234578888899999999999 994 899999999999999987643211 11224677777777 5555544544
No 179
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.64 E-value=1.1e-07 Score=95.42 Aligned_cols=203 Identities=16% Similarity=0.129 Sum_probs=129.4
Q ss_pred hhHHHhhhcCCCchh---hhhhcCC--ceEEEEechhhhhhhcCCc--hHHHHH---HHH---HHHhhCCceEeeccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTS--ATFLRVVGSELIQKYLGDG--PKLVRE---LFR---VAEEHAPSIVFIDEIDA 147 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~--~~~~~v~~s~l~~~~~g~~--~~~l~~---~f~---~a~~~~P~Ii~iDEiD~ 147 (317)
|++++.|.+|||||+ +++.-+. .+|..+..+-=.+..+|.. +..++. .|+ .+..+ ..|||+||+..
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah-~GvL~lDe~n~ 104 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEAD-GGVLVLAMAER 104 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeecc-CCEEEecCccc
Confidence 578999999999999 6666553 4777765443223333332 111110 010 01112 25999999987
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC---CCCCccccCCCcc
Q psy7780 148 VGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI---ETLDPALIRPGRI 224 (317)
Q Consensus 148 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~---~~Ld~al~rpgRf 224 (317)
+-+ +++..|++-|+.-... +..+..++.+|.++++|++-|.. ..|+++++. ||
T Consensus 105 ~~~--------------~~~~aLleame~G~vt--------IeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf 160 (584)
T PRK13406 105 LEP--------------GTAARLAAALDTGEVR--------LERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RL 160 (584)
T ss_pred CCH--------------HHHHHHHHHHhCCcEE--------EEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--he
Confidence 742 2444555555432211 11356677888999999985433 349999999 99
Q ss_pred eeEEEeCCCCHHHHH-------HHH--HHHhcCCCCCcCCCHHHHHHh--CCCC-CHHHHHHHHHHHHHHHHHhcCCCcC
Q psy7780 225 DRKIEFPLPDEKTKR-------RIF--NIHTSRMTLAEDVNLQELIMA--KDDL-SGADIKAICTEAGLMALRERRMKVT 292 (317)
Q Consensus 225 ~~~I~~~~P~~~~r~-------~Il--~~~l~~~~~~~~~~~~~ia~~--t~g~-s~~dl~~l~~~A~~~a~~~~~~~it 292 (317)
+..+.++.|+..+.. .|. +..+.+..+. +..+..++.. ..|. |.+--..+++-|...|.-+++..|+
T Consensus 161 ~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~-~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~ 239 (584)
T PRK13406 161 AFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPP-PEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVE 239 (584)
T ss_pred EEEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCC
Confidence 999999988754321 233 2223333332 2223333332 2465 7788888899899999999999999
Q ss_pred HHHHHHHHHHHHhhhcc
Q psy7780 293 NEDFKKSKESVLYRKKE 309 (317)
Q Consensus 293 ~~d~~~al~~v~~~~~~ 309 (317)
.+|+.+|+.-++.++..
T Consensus 240 ~~dv~~Aa~lvL~hR~~ 256 (584)
T PRK13406 240 EEDLALAARLVLAPRAT 256 (584)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 99999999999988764
No 180
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=6.3e-08 Score=88.40 Aligned_cols=90 Identities=22% Similarity=0.436 Sum_probs=65.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhh-hhcCCc-hHHHHHHHHHHH----hhCCceEeecccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ-KYLGDG-PKLVRELFRVAE----EHAPSIVFIDEIDAVGTKR 152 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~-~~~g~~-~~~l~~~f~~a~----~~~P~Ii~iDEiD~l~~~r 152 (317)
-+|+-||.|||||+ .+|..++.||-.-+++.|.. .|+|+- +..+-++.+.|. +....||+|||||.+..+.
T Consensus 99 NILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkS 178 (408)
T COG1219 99 NILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKS 178 (408)
T ss_pred cEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccC
Confidence 56899999999999 99999999999999999876 689887 445566655442 2335799999999999876
Q ss_pred cCCC---CCchhHHHHHHHHHH
Q psy7780 153 YDSN---SGGEREIQRTMLELL 171 (317)
Q Consensus 153 ~~~~---~~~~~~~~~~l~~ll 171 (317)
.+.. +-+..-+|+.|..++
T Consensus 179 eN~SITRDVSGEGVQQALLKii 200 (408)
T COG1219 179 ENPSITRDVSGEGVQQALLKII 200 (408)
T ss_pred CCCCcccccCchHHHHHHHHHH
Confidence 4322 112234566554444
No 181
>KOG0745|consensus
Probab=98.58 E-value=6e-08 Score=91.66 Aligned_cols=140 Identities=27% Similarity=0.395 Sum_probs=90.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhh-hhcCCc-hHHHHHHHHHHH----hhCCceEeecccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ-KYLGDG-PKLVRELFRVAE----EHAPSIVFIDEIDAVGTKR 152 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~-~~~g~~-~~~l~~~f~~a~----~~~P~Ii~iDEiD~l~~~r 152 (317)
-+|+-||.|+|||+ .+|.-++.||...+|+.|.+ .|+|+- +..|.+++..|. +.+..||||||+|.+..+.
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 46889999999999 99999999999999999876 689887 667788877662 3445799999999998544
Q ss_pred cCCC---CCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-------CCCCccccCCC
Q psy7780 153 YDSN---SGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-------ETLDPALIRPG 222 (317)
Q Consensus 153 ~~~~---~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-------~~Ld~al~rpg 222 (317)
.+-. +-+..-+|+.|+.+++ |---+.. -........+..+.|-|||-. -.||.-+-|
T Consensus 308 ~~i~~~RDVsGEGVQQaLLKllE---GtvVnVp--------eK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r-- 374 (564)
T KOG0745|consen 308 ESIHTSRDVSGEGVQQALLKLLE---GTVVNVP--------EKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR-- 374 (564)
T ss_pred ccccccccccchhHHHHHHHHhc---ccEEccc--------CCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH--
Confidence 2211 2223346666655554 3211100 000111122444444444432 347777777
Q ss_pred cc-eeEEEeCCCC
Q psy7780 223 RI-DRKIEFPLPD 234 (317)
Q Consensus 223 Rf-~~~I~~~~P~ 234 (317)
|. +..+-|..|+
T Consensus 375 R~~d~slGFg~~s 387 (564)
T KOG0745|consen 375 RLDDKSLGFGAPS 387 (564)
T ss_pred hhcchhcccCCCC
Confidence 76 5667888883
No 182
>KOG2227|consensus
Probab=98.52 E-value=6.9e-07 Score=85.42 Aligned_cols=191 Identities=18% Similarity=0.183 Sum_probs=118.2
Q ss_pred hHHHhhhcCCCchh-------hhhhcCC-ceEEEEechhhh----------hhh----cCCc-hHHHHHHHHHH-Hhh-C
Q psy7780 82 SELIQKYLGDGPKL-------AVANQTS-ATFLRVVGSELI----------QKY----LGDG-PKLVRELFRVA-EEH-A 136 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~-------aiA~~~~-~~~~~v~~s~l~----------~~~----~g~~-~~~l~~~f~~a-~~~-~ 136 (317)
..-+.|-||||||. ..-.+.. ...++++|.+|. +.+ .+.+ +......|+.= .+. .
T Consensus 177 SlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~ 256 (529)
T KOG2227|consen 177 SLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKF 256 (529)
T ss_pred ceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccc
Confidence 34467889999997 1222222 356888887532 111 2222 22333444432 222 3
Q ss_pred CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCc
Q psy7780 137 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDP 216 (317)
Q Consensus 137 P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~ 216 (317)
|-++++||+|.|+..+ +.++.++.+ ++.+.+ .++++|+.+|..|.=|.
T Consensus 257 ~~llVlDEmD~L~tr~-----------~~vLy~lFe-wp~lp~--------------------sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 257 MLLLVLDEMDHLITRS-----------QTVLYTLFE-WPKLPN--------------------SRIILIGIANSLDLTDR 304 (529)
T ss_pred eEEEEechhhHHhhcc-----------cceeeeehh-cccCCc--------------------ceeeeeeehhhhhHHHH
Confidence 6789999999998543 223433332 233322 57889999999887664
Q ss_pred cccC----CCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCC--CHHHHHHhCCCCCHHHHH---HHHHHHHHHHHHhc
Q psy7780 217 ALIR----PGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDV--NLQELIMAKDDLSGADIK---AICTEAGLMALRER 287 (317)
Q Consensus 217 al~r----pgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~--~~~~ia~~t~g~s~~dl~---~l~~~A~~~a~~~~ 287 (317)
.|-| -+.-...+.|++++.++..+|++..+......... .++-.|+...+.|| |++ .+|+.|...+-.+.
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRkaLdv~R~aiEI~E~e~ 383 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRKALDVCRRAIEIAEIEK 383 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHHHHHHHHHHHHHHHHHH
Confidence 4421 12224689999999999999999998876654333 35666777888776 555 45787877776554
Q ss_pred C----------------CCcCHHHHHHHHHHHHh
Q psy7780 288 R----------------MKVTNEDFKKSKESVLY 305 (317)
Q Consensus 288 ~----------------~~it~~d~~~al~~v~~ 305 (317)
+ ..|..+++-.++.++-.
T Consensus 384 r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~ 417 (529)
T KOG2227|consen 384 RKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDG 417 (529)
T ss_pred hhccccCCCCCCCcccccccchHHHHHHhhhhcc
Confidence 3 34557777777776643
No 183
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.52 E-value=1.7e-07 Score=87.70 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=32.3
Q ss_pred CCeEEEEEcCC------------CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCC
Q psy7780 200 GDVKVIMATNR------------IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTL 251 (317)
Q Consensus 200 ~~v~vI~tTN~------------~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~ 251 (317)
-.-+||++||| |..+|..|+. |+ ..|...+++.++.++|++...+...+
T Consensus 306 ~sPiiIlATNRg~~~irGt~~~sphGiP~DlLD--Rl-lII~t~py~~~ei~~Il~iR~~~E~v 366 (398)
T PF06068_consen 306 LSPIIILATNRGITKIRGTDIISPHGIPLDLLD--RL-LIIRTKPYSEEEIKQILKIRAKEEDV 366 (398)
T ss_dssp T--EEEEEES-SEEE-BTTS-EEETT--HHHHT--TE-EEEEE----HHHHHHHHHHHHHHCT-
T ss_pred CCcEEEEecCceeeeccCccCcCCCCCCcchHh--hc-EEEECCCCCHHHHHHHHHhhhhhhcC
Confidence 44678888984 4568889999 98 58889999999999999999865443
No 184
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.50 E-value=1.6e-07 Score=93.28 Aligned_cols=185 Identities=16% Similarity=0.180 Sum_probs=99.5
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhh-----hcCCch--------HHHHHHHHHHHhhCCceEee
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQK-----YLGDGP--------KLVRELFRVAEEHAPSIVFI 142 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~-----~~g~~~--------~~l~~~f~~a~~~~P~Ii~i 142 (317)
|+|+.|.+||||++ ++.+. .+.+|+.++|..+-.. .+|..+ ..-..+|+.|. ...|||
T Consensus 237 pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfL 313 (526)
T TIGR02329 237 TVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFL 313 (526)
T ss_pred cEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhcC---CceEEe
Confidence 89999999999999 44433 4569999999865321 122110 00112344443 358999
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHhc--CCCcccccccchhhhcccccccCCCCeEEEEEcCCCC--C-----
Q psy7780 143 DEIDAVGTKRYDSNSGGEREIQRTMLELLNQLD--GFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE--T----- 213 (317)
Q Consensus 143 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld--~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~--~----- 213 (317)
|||+.+-.. .+.-|..+|.+-. .+.+. ...+-++.+|++||..- .
T Consensus 314 deI~~Lp~~-----------~Q~~Ll~~L~~~~~~r~g~~---------------~~~~~dvRiIaat~~~l~~~v~~g~ 367 (526)
T TIGR02329 314 DEIGEMPLP-----------LQTRLLRVLEEREVVRVGGT---------------EPVPVDVRVVAATHCALTTAVQQGR 367 (526)
T ss_pred cChHhCCHH-----------HHHHHHHHHhcCcEEecCCC---------------ceeeecceEEeccCCCHHHHhhhcc
Confidence 999998432 3555555654411 11000 01124578999997742 1
Q ss_pred CCccccCCCcce-eEEEeCCCC--HHHHHHHHHHHhcCCCCC--cCCCHHHHHH--------hCCCC--CHHHHHHHHHH
Q psy7780 214 LDPALIRPGRID-RKIEFPLPD--EKTKRRIFNIHTSRMTLA--EDVNLQELIM--------AKDDL--SGADIKAICTE 278 (317)
Q Consensus 214 Ld~al~rpgRf~-~~I~~~~P~--~~~r~~Il~~~l~~~~~~--~~~~~~~ia~--------~t~g~--s~~dl~~l~~~ 278 (317)
+.+.|.. |+. ..|++|+.. .++...+++.++.+.... ...+-+.+.. ....+ +-++|++++++
T Consensus 368 fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier 445 (526)
T TIGR02329 368 FRRDLFY--RLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVER 445 (526)
T ss_pred hhHHHHH--hcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 2223333 443 466676663 255556666766543211 1122222111 11222 56788899888
Q ss_pred HHHHHHHhcCCCcCHHHHH
Q psy7780 279 AGLMALRERRMKVTNEDFK 297 (317)
Q Consensus 279 A~~~a~~~~~~~it~~d~~ 297 (317)
++..+.......|+.+|+.
T Consensus 446 ~~i~~~~~~~~~I~~~~l~ 464 (526)
T TIGR02329 446 LALELSAMPAGALTPDVLR 464 (526)
T ss_pred HHHhcccCCCCccCHHHhh
Confidence 8765432223456666654
No 185
>KOG2035|consensus
Probab=98.50 E-value=9e-07 Score=79.55 Aligned_cols=175 Identities=14% Similarity=0.262 Sum_probs=108.3
Q ss_pred hHHHhhhcCCCchh---hhhhcC-C--c--------------------------eEEEEechhhhhhhcCCchH-HHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-S--A--------------------------TFLRVVGSELIQKYLGDGPK-LVREL 128 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-~--~--------------------------~~~~v~~s~l~~~~~g~~~~-~l~~~ 128 (317)
+.+||||+|+||.| ++-+++ | . ..+++++|+ .|.-.+ -++++
T Consensus 36 Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQel 110 (351)
T KOG2035|consen 36 HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQEL 110 (351)
T ss_pred eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhh-----cCcccHHHHHHH
Confidence 57899999999998 666665 1 1 112333333 333322 35555
Q ss_pred HHHHHhhCC---------ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCC
Q psy7780 129 FRVAEEHAP---------SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLP 199 (317)
Q Consensus 129 f~~a~~~~P---------~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 199 (317)
.....+.+| -+++|-|+|.|... .|..|..-++. +.
T Consensus 111 lKevAQt~qie~~~qr~fKvvvi~ead~LT~d-----------AQ~aLRRTMEk---Ys--------------------- 155 (351)
T KOG2035|consen 111 LKEVAQTQQIETQGQRPFKVVVINEADELTRD-----------AQHALRRTMEK---YS--------------------- 155 (351)
T ss_pred HHHHHhhcchhhccccceEEEEEechHhhhHH-----------HHHHHHHHHHH---Hh---------------------
Confidence 555433332 48999999998432 23333333332 21
Q ss_pred CCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHH--
Q psy7780 200 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAIC-- 276 (317)
Q Consensus 200 ~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~-- 276 (317)
+++.+|..+|....+-+++++ |+ .-|.+|.|+.++...+++..+.+.++. +..-+..+|+.+. ++++..+
T Consensus 156 ~~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~----~nLRrAllm 228 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSN----RNLRRALLM 228 (351)
T ss_pred cCceEEEEecCcccchhHHhh--he-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhc----ccHHHHHHH
Confidence 557799999999999999999 88 479999999999999999998876655 3334566777654 4555332
Q ss_pred HHHHHHH---HHhcCCCcCHHHHHHHHHHH
Q psy7780 277 TEAGLMA---LRERRMKVTNEDFKKSKESV 303 (317)
Q Consensus 277 ~~A~~~a---~~~~~~~it~~d~~~al~~v 303 (317)
-+|+... ...+...+..-|++..+.++
T Consensus 229 lE~~~~~n~~~~a~~~~i~~~dWe~~i~e~ 258 (351)
T KOG2035|consen 229 LEAVRVNNEPFTANSQVIPKPDWEIYIQEI 258 (351)
T ss_pred HHHHHhccccccccCCCCCCccHHHHHHHH
Confidence 2332221 11122445555666655544
No 186
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.47 E-value=1.7e-07 Score=93.28 Aligned_cols=186 Identities=19% Similarity=0.211 Sum_probs=96.0
Q ss_pred hHHHhhhcCCCchh---hhhhc-----------CCceEEEEechhhhhh-----hcCCchH--------HHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQ-----------TSATFLRVVGSELIQK-----YLGDGPK--------LVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~-----------~~~~~~~v~~s~l~~~-----~~g~~~~--------~l~~~f~~a~~ 134 (317)
|+|+.|.+||||++ ++-+. .+.+|+.++|+.+-.. .+|..+. .-.-+|+.|.
T Consensus 244 pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~- 322 (538)
T PRK15424 244 AVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH- 322 (538)
T ss_pred cEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchhccC-
Confidence 89999999999999 44433 4579999999875321 1221110 0112444443
Q ss_pred hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC--
Q psy7780 135 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-- 212 (317)
Q Consensus 135 ~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-- 212 (317)
...||||||+.+-.. .+..|..+|++-.- ... ......+-++.+|++||..-
T Consensus 323 --gGTLfLdeI~~Lp~~-----------~Q~kLl~~L~e~~~-~r~------------G~~~~~~~dvRiIaat~~~L~~ 376 (538)
T PRK15424 323 --GGTLFLDEIGEMPLP-----------LQTRLLRVLEEKEV-TRV------------GGHQPVPVDVRVISATHCDLEE 376 (538)
T ss_pred --CCEEEEcChHhCCHH-----------HHHHHHhhhhcCeE-Eec------------CCCceeccceEEEEecCCCHHH
Confidence 358999999998433 35555555543110 000 00011124678999998741
Q ss_pred C-----CCccccCCCcce-eEEEeCCCC--HHHHHHHHHHHhcCCC--CCcCCCHHHH------HH--hCCCC--CHHHH
Q psy7780 213 T-----LDPALIRPGRID-RKIEFPLPD--EKTKRRIFNIHTSRMT--LAEDVNLQEL------IM--AKDDL--SGADI 272 (317)
Q Consensus 213 ~-----Ld~al~rpgRf~-~~I~~~~P~--~~~r~~Il~~~l~~~~--~~~~~~~~~i------a~--~t~g~--s~~dl 272 (317)
. +.+.|.. |+. ..|++|+.. .++...+++.++++.. ......-+.+ .. ....+ +-++|
T Consensus 377 ~v~~g~Fr~dL~y--rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL 454 (538)
T PRK15424 377 DVRQGRFRRDLFY--RLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVREL 454 (538)
T ss_pred HHhcccchHHHHH--HhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHH
Confidence 1 1222333 332 355565552 2455556676665421 1111111111 01 11222 67889
Q ss_pred HHHHHHHHHHHHHhcCCCcCHHHH
Q psy7780 273 KAICTEAGLMALRERRMKVTNEDF 296 (317)
Q Consensus 273 ~~l~~~A~~~a~~~~~~~it~~d~ 296 (317)
++++++++..+.......++.+++
T Consensus 455 ~nvier~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 455 RNLMERLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred HHHHHHHHHhcCCCCcCccCHHHh
Confidence 999998877542221234444443
No 187
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.46 E-value=3.8e-07 Score=85.75 Aligned_cols=174 Identities=18% Similarity=0.218 Sum_probs=95.2
Q ss_pred hhHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhhh-----cCCch-------HHHHHHHHHHHhhCCceEee
Q psy7780 81 GSELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQKY-----LGDGP-------KLVRELFRVAEEHAPSIVFI 142 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~~-----~g~~~-------~~l~~~f~~a~~~~P~Ii~i 142 (317)
.|+|+.|.+||||++ ++... .+.+|+.|+|+.+-... +|... ..-...|+.| ....|||
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a---~gGtL~L 99 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERA---DGGTLFL 99 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhC---CCCEEEe
Confidence 389999999999999 33332 34699999998653211 11100 0001123333 2469999
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-------CCCC
Q psy7780 143 DEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-------ETLD 215 (317)
Q Consensus 143 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-------~~Ld 215 (317)
||||.+-. ..+..|..+++.-. +... . .....+.++.+|++||.. ..+.
T Consensus 100 dei~~L~~-----------~~Q~~Ll~~l~~~~-~~~~-g-----------~~~~~~~~~RiI~at~~~l~~~~~~g~fr 155 (329)
T TIGR02974 100 DELATASL-----------LVQEKLLRVIEYGE-FERV-G-----------GSQTLQVDVRLVCATNADLPALAAEGRFR 155 (329)
T ss_pred CChHhCCH-----------HHHHHHHHHHHcCc-EEec-C-----------CCceeccceEEEEechhhHHHHhhcCchH
Confidence 99999843 23555555554311 1000 0 000112568899999863 2355
Q ss_pred ccccCCCcce-eEEEeCCCC--HHHHHHHHHHHhcCC----CCC--cCCCHH---HHHHhCCCCCHHHHHHHHHHHHHHH
Q psy7780 216 PALIRPGRID-RKIEFPLPD--EKTKRRIFNIHTSRM----TLA--EDVNLQ---ELIMAKDDLSGADIKAICTEAGLMA 283 (317)
Q Consensus 216 ~al~rpgRf~-~~I~~~~P~--~~~r~~Il~~~l~~~----~~~--~~~~~~---~ia~~t~g~s~~dl~~l~~~A~~~a 283 (317)
+.|.. ||. ..|.+|+.. .++...+++.++.+. +.. ..++-+ .+....=--+-++|++++++|+..+
T Consensus 156 ~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 156 ADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhC
Confidence 66666 773 467776664 355666666665432 111 122222 2222221125678888888877654
No 188
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.46 E-value=6e-07 Score=90.70 Aligned_cols=158 Identities=13% Similarity=0.199 Sum_probs=87.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEE-Eechh-------------hhhh--hcCCchHHHHHHHHHHHh---------
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLR-VVGSE-------------LIQK--YLGDGPKLVRELFRVAEE--------- 134 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~-v~~s~-------------l~~~--~~g~~~~~l~~~f~~a~~--------- 134 (317)
.+|+||||||||+ ++|.+++..+++ ++... +... ........+++++..|..
T Consensus 113 llL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~ 192 (637)
T TIGR00602 113 LLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDL 192 (637)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhccccccc
Confidence 6789999999999 889888865433 21110 0000 011223455666666652
Q ss_pred -hCCceEeecccccccccccCCCCCchhHHHHHHHHHHH-HhcCCCcccccccchhhhcccccccCCCCeEEEEEcC-CC
Q psy7780 135 -HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLN-QLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATN-RI 211 (317)
Q Consensus 135 -~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~-~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN-~~ 211 (317)
....||||||++.++..- . +.+..+|. .... . +.+.+|+++| .+
T Consensus 193 ~~~~~IILIDEiPn~~~r~-------~----~~lq~lLr~~~~e---~-------------------~~~pLI~I~TE~~ 239 (637)
T TIGR00602 193 MTDKKIILVEDLPNQFYRD-------T----RALHEILRWKYVS---I-------------------GRCPLVFIITESL 239 (637)
T ss_pred CCceeEEEeecchhhchhh-------H----HHHHHHHHHHhhc---C-------------------CCceEEEEecCCc
Confidence 235699999999876321 1 12223333 1111 1 3333444443 12
Q ss_pred C--------------CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCC--Cc------CCCHHHHHHhCCCCCH
Q psy7780 212 E--------------TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTL--AE------DVNLQELIMAKDDLSG 269 (317)
Q Consensus 212 ~--------------~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~--~~------~~~~~~ia~~t~g~s~ 269 (317)
. .|.++++..-|+ .+|.|++.+...-.+.|+..+..... .. ...+..|+.. +.
T Consensus 240 ~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~----s~ 314 (637)
T TIGR00602 240 EGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQG----CS 314 (637)
T ss_pred cccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHh----CC
Confidence 1 133678742244 37999999999977777777654211 11 1235556654 45
Q ss_pred HHHHHHHHH
Q psy7780 270 ADIKAICTE 278 (317)
Q Consensus 270 ~dl~~l~~~ 278 (317)
+|++..++.
T Consensus 315 GDiRsAIn~ 323 (637)
T TIGR00602 315 GDIRSAINS 323 (637)
T ss_pred ChHHHHHHH
Confidence 588877663
No 189
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.44 E-value=1.2e-07 Score=90.26 Aligned_cols=173 Identities=23% Similarity=0.229 Sum_probs=99.6
Q ss_pred hHHHhhhcCCCchh------hhhhc-CCceEEEEechhhhhh-------------hcCCchHHHHHHHHHHHhhCCceEe
Q psy7780 82 SELIQKYLGDGPKL------AVANQ-TSATFLRVVGSELIQK-------------YLGDGPKLVRELFRVAEEHAPSIVF 141 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~------aiA~~-~~~~~~~v~~s~l~~~-------------~~g~~~~~l~~~f~~a~~~~P~Ii~ 141 (317)
|+|+.|.+||||++ +.+.. .+.||+.+||+.+-.. |.| ....-.-+|+.|.. -++|
T Consensus 103 ~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftG-a~~~k~Glfe~A~G---GtLf 178 (403)
T COG1221 103 PVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTG-AQGGKAGLFEQANG---GTLF 178 (403)
T ss_pred cEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeec-ccCCcCchheecCC---CEEe
Confidence 99999999999998 44455 5789999999886432 222 11122234444433 4999
Q ss_pred ecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC--CCCCCc--c
Q psy7780 142 IDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR--IETLDP--A 217 (317)
Q Consensus 142 iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~--~~~Ld~--a 217 (317)
+|||..+-+. .+..+..+|+.-. .... +.....+.+|.+|+|||- .+.+-. .
T Consensus 179 LDEI~~LP~~-----------~Q~kLl~~le~g~--~~rv-----------G~~~~~~~dVRli~AT~~~l~~~~~~g~d 234 (403)
T COG1221 179 LDEIHRLPPE-----------GQEKLLRVLEEGE--YRRV-----------GGSQPRPVDVRLICATTEDLEEAVLAGAD 234 (403)
T ss_pred hhhhhhCCHh-----------HHHHHHHHHHcCc--eEec-----------CCCCCcCCCceeeeccccCHHHHHHhhcc
Confidence 9999988432 2444445554311 1000 011122367999999974 222222 3
Q ss_pred ccCCCcceeEEEeCCCC--HHHHHHHHHHHhc----CCCCCcCCCHHHHHHh-----CCCCCHHHHHHHHHHHHHHHH
Q psy7780 218 LIRPGRIDRKIEFPLPD--EKTKRRIFNIHTS----RMTLAEDVNLQELIMA-----KDDLSGADIKAICTEAGLMAL 284 (317)
Q Consensus 218 l~rpgRf~~~I~~~~P~--~~~r~~Il~~~l~----~~~~~~~~~~~~ia~~-----t~g~s~~dl~~l~~~A~~~a~ 284 (317)
+.+ -|+...|.+|+.. .+++..+++.+++ +.+.....+..+..+. ..| +-+++++++..++..+.
T Consensus 235 l~~-rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pG-NirELkN~Ve~~~~~~~ 310 (403)
T COG1221 235 LTR-RLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPG-NIRELKNLVERAVAQAS 310 (403)
T ss_pred hhh-hhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHHhc
Confidence 332 1566677877763 3555556666554 3333322222222222 244 67899999999988774
No 190
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.44 E-value=7.4e-07 Score=89.20 Aligned_cols=184 Identities=21% Similarity=0.290 Sum_probs=101.0
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhhh-----cCCchHH-------HHHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQKY-----LGDGPKL-------VRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~~-----~g~~~~~-------l~~~f~~a~~~~P~Ii~iD 143 (317)
|+|+.|++||||++ ++.+. .+.+|+.++|+.+-... +|..... -...|+.| ...+||||
T Consensus 221 pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ld 297 (534)
T TIGR01817 221 TVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLD 297 (534)
T ss_pred CEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEe
Confidence 89999999999999 55544 35699999998753221 1111000 00012222 24699999
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-------CCCc
Q psy7780 144 EIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-------TLDP 216 (317)
Q Consensus 144 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-------~Ld~ 216 (317)
|||.+... .+..|..+++.-. +...... ...+.++.+|++|+..- .+.+
T Consensus 298 ei~~L~~~-----------~Q~~Ll~~l~~~~-~~~~~~~------------~~~~~~~riI~~s~~~l~~~~~~~~f~~ 353 (534)
T TIGR01817 298 EIGEISPA-----------FQAKLLRVLQEGE-FERVGGN------------RTLKVDVRLVAATNRDLEEAVAKGEFRA 353 (534)
T ss_pred chhhCCHH-----------HHHHHHHHHhcCc-EEECCCC------------ceEeecEEEEEeCCCCHHHHHHcCCCCH
Confidence 99998432 3555555554311 1100000 00013578999987631 2333
Q ss_pred cccCCCcce-eEEEeCCCC--HHHHHHHHHHHhcCCC----CCcCCC---HHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q psy7780 217 ALIRPGRID-RKIEFPLPD--EKTKRRIFNIHTSRMT----LAEDVN---LQELIMAKDDLSGADIKAICTEAGLMALRE 286 (317)
Q Consensus 217 al~rpgRf~-~~I~~~~P~--~~~r~~Il~~~l~~~~----~~~~~~---~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~ 286 (317)
.|.. |+. ..|.+|+.. .++...|++.++.+.. .....+ +..+....=--+-++|++++++|+..+
T Consensus 354 ~L~~--rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~--- 428 (534)
T TIGR01817 354 DLYY--RINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTATLS--- 428 (534)
T ss_pred HHHH--HhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---
Confidence 4444 443 467777664 4666677777765421 111222 222333221126778888888877543
Q ss_pred cCCCcCHHHHH
Q psy7780 287 RRMKVTNEDFK 297 (317)
Q Consensus 287 ~~~~it~~d~~ 297 (317)
....|+.+|+.
T Consensus 429 ~~~~I~~~~l~ 439 (534)
T TIGR01817 429 RSGTITRSDFS 439 (534)
T ss_pred CCCcccHHHCc
Confidence 34578888874
No 191
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=4.6e-07 Score=85.30 Aligned_cols=86 Identities=17% Similarity=0.309 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHhh----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccccc
Q psy7780 122 PKLVRELFRVAEEH----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIY 197 (317)
Q Consensus 122 ~~~l~~~f~~a~~~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 197 (317)
-..+|++.+.+... .--|++||++|.+... ..+ .||..++.-.
T Consensus 114 idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~-----------AaN---aLLKtLEEPp------------------- 160 (342)
T PRK06964 114 IEQVRALLDFCGVGTHRGGARVVVLYPAEALNVA-----------AAN---ALLKTLEEPP------------------- 160 (342)
T ss_pred HHHHHHHHHHhccCCccCCceEEEEechhhcCHH-----------HHH---HHHHHhcCCC-------------------
Confidence 34667666654322 2359999999988432 233 4444444321
Q ss_pred CCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHH
Q psy7780 198 LPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIH 245 (317)
Q Consensus 198 ~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~ 245 (317)
.++++|.+|++++.|.|.+++ |+ ..+.|++|+.++..+.|...
T Consensus 161 --~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 161 --PGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred --cCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 678899999999999999999 99 58999999999999888764
No 192
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.39 E-value=6.6e-07 Score=84.08 Aligned_cols=172 Identities=16% Similarity=0.174 Sum_probs=94.9
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhh-----hhcCCch-------HHHHHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQ-----KYLGDGP-------KLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~-----~~~g~~~-------~~l~~~f~~a~~~~P~Ii~iD 143 (317)
|+|+.|.+||||++ ++... .+.+|+.++|+.+-. ..+|... ..-...|+.| ....||||
T Consensus 31 pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~ 107 (326)
T PRK11608 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLD 107 (326)
T ss_pred CEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhcc---CCCeEEeC
Confidence 89999999999999 33322 346999999987532 1122110 0001123333 24689999
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-------CCCCc
Q psy7780 144 EIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-------ETLDP 216 (317)
Q Consensus 144 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-------~~Ld~ 216 (317)
|+|.+... .+..|..+++.-. +..... .-..+.++.+|+||+.. ..+.+
T Consensus 108 ~i~~L~~~-----------~Q~~L~~~l~~~~-~~~~g~------------~~~~~~~~RiI~~s~~~l~~l~~~g~f~~ 163 (326)
T PRK11608 108 ELATAPML-----------VQEKLLRVIEYGE-LERVGG------------SQPLQVNVRLVCATNADLPAMVAEGKFRA 163 (326)
T ss_pred ChhhCCHH-----------HHHHHHHHHhcCc-EEeCCC------------CceeeccEEEEEeCchhHHHHHHcCCchH
Confidence 99998532 3555555554311 100000 00111368899998763 34667
Q ss_pred cccCCCcc-eeEEEeCCCC--HHHHHHHHHHHhcCC----CCC--cCCCHHHHHHh-CCCC--CHHHHHHHHHHHHHH
Q psy7780 217 ALIRPGRI-DRKIEFPLPD--EKTKRRIFNIHTSRM----TLA--EDVNLQELIMA-KDDL--SGADIKAICTEAGLM 282 (317)
Q Consensus 217 al~rpgRf-~~~I~~~~P~--~~~r~~Il~~~l~~~----~~~--~~~~~~~ia~~-t~g~--s~~dl~~l~~~A~~~ 282 (317)
.|.. || ...|.+|+.. .++...+++.++.+. +.. ..++-+.+... ...+ +-++|++++++|+..
T Consensus 164 dL~~--~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~ 239 (326)
T PRK11608 164 DLLD--RLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYR 239 (326)
T ss_pred HHHH--hcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 7777 77 4567777663 255566666665432 111 12333333222 1222 567888888887764
No 193
>PRK08116 hypothetical protein; Validated
Probab=98.39 E-value=3.8e-07 Score=83.32 Aligned_cols=125 Identities=16% Similarity=0.215 Sum_probs=73.5
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhc----CCchHHHHHHHHHHHhhCCceEeeccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYL----GDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~----g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~ 151 (317)
+.+|+|+||||||+ |+|+++ +.+++.++.++++..+. +.......++++... ...+|+|||+.....
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~~- 192 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAERD- 192 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCCC-
Confidence 58899999999999 888875 78899999988776532 111122223333332 236999999864211
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-CC----CCccccCCCcc--
Q psy7780 152 RYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-ET----LDPALIRPGRI-- 224 (317)
Q Consensus 152 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-~~----Ld~al~rpgRf-- 224 (317)
....+..+.++++..- . .+..+|.|||.+ +. ++..+.+ |+
T Consensus 193 --------t~~~~~~l~~iin~r~---~--------------------~~~~~IiTsN~~~~eL~~~~~~ri~s--Rl~e 239 (268)
T PRK08116 193 --------TEWAREKVYNIIDSRY---R--------------------KGLPTIVTTNLSLEELKNQYGKRIYD--RILE 239 (268)
T ss_pred --------CHHHHHHHHHHHHHHH---H--------------------CCCCEEEECCCCHHHHHHHHhHHHHH--HHHH
Confidence 1122334444544321 1 223388888874 33 4667777 74
Q ss_pred -eeEEEeCCCCHHHHHHHHHH
Q psy7780 225 -DRKIEFPLPDEKTKRRIFNI 244 (317)
Q Consensus 225 -~~~I~~~~P~~~~r~~Il~~ 244 (317)
-..|.++-|+. |..+.+.
T Consensus 240 ~~~~v~~~g~d~--R~~~~~e 258 (268)
T PRK08116 240 MCTPVENEGKSY--RKEIAKE 258 (268)
T ss_pred cCEEEEeeCcCh--hHHHHHH
Confidence 23466666653 4444443
No 194
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.37 E-value=2.2e-06 Score=87.58 Aligned_cols=187 Identities=16% Similarity=0.230 Sum_probs=97.3
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhh-----hhhcCCc----hHHHHHHHHHHHhhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELI-----QKYLGDG----PKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~-----~~~~g~~----~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
|+||+|.+||||++ ++.+.. +.+|+.++|..+- +..+|.. ...-...|+.| ....|||||||
T Consensus 350 pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~ 426 (638)
T PRK11388 350 PVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVE 426 (638)
T ss_pred CEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChh
Confidence 89999999999999 555443 4699999997652 2223321 00000123222 24699999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-------CCCcccc
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-------TLDPALI 219 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-------~Ld~al~ 219 (317)
.+-.. .+..|..+|+.=. +... . .....+-++.+|+|||..- .+.+.|.
T Consensus 427 ~l~~~-----------~Q~~Ll~~l~~~~-~~~~-~-----------~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~ 482 (638)
T PRK11388 427 YLSPE-----------LQSALLQVLKTGV-ITRL-D-----------SRRLIPVDVRVIATTTADLAMLVEQNRFSRQLY 482 (638)
T ss_pred hCCHH-----------HHHHHHHHHhcCc-EEeC-C-----------CCceEEeeEEEEEeccCCHHHHHhcCCChHHHh
Confidence 88432 3555555554210 0000 0 0000113578999998642 1222232
Q ss_pred CCCcc-eeEEEeCCCCH--HHHHHHHHHHhcCC----CCCcCCC---HHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 220 RPGRI-DRKIEFPLPDE--KTKRRIFNIHTSRM----TLAEDVN---LQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 220 rpgRf-~~~I~~~~P~~--~~r~~Il~~~l~~~----~~~~~~~---~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
. |+ ...|.+|+..+ ++...+++.++.+. .....++ +..+....=--+-++|+++++.|...+ ...
T Consensus 483 ~--~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~---~~~ 557 (638)
T PRK11388 483 Y--ALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSS---DNG 557 (638)
T ss_pred h--hhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhC---CCC
Confidence 2 33 34566665532 44555666665432 1111122 222333221125678888888776543 233
Q ss_pred CcCHHHHHHHH
Q psy7780 290 KVTNEDFKKSK 300 (317)
Q Consensus 290 ~it~~d~~~al 300 (317)
.|+.+|+...+
T Consensus 558 ~i~~~~lp~~~ 568 (638)
T PRK11388 558 RIRLSDLPEHL 568 (638)
T ss_pred eecHHHCchhh
Confidence 56666664443
No 195
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=1.5e-06 Score=81.71 Aligned_cols=120 Identities=17% Similarity=0.181 Sum_probs=78.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||+|+||++ ++|+.+-+ .+..+... ++ .-+-..++++.+.+..
T Consensus 30 a~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~---~~--~i~id~ir~l~~~~~~ 104 (329)
T PRK08058 30 AYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD---GQ--SIKKDQIRYLKEEFSK 104 (329)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc---cc--cCCHHHHHHHHHHHhh
Confidence 56899999999998 55554422 12222211 00 0123456666555432
Q ss_pred ----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 ----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
...-|++|||+|.+... .++ .||..++... +++++|.+|+.
T Consensus 105 ~~~~~~~kvviI~~a~~~~~~-----------a~N---aLLK~LEEPp---------------------~~~~~Il~t~~ 149 (329)
T PRK08058 105 SGVESNKKVYIIEHADKMTAS-----------AAN---SLLKFLEEPS---------------------GGTTAILLTEN 149 (329)
T ss_pred CCcccCceEEEeehHhhhCHH-----------HHH---HHHHHhcCCC---------------------CCceEEEEeCC
Confidence 22359999999987422 233 4454444322 56778889989
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHH
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNI 244 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~ 244 (317)
+..|.|++++ |+. .++|++|+.++..++++.
T Consensus 150 ~~~ll~TIrS--Rc~-~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 150 KHQILPTILS--RCQ-VVEFRPLPPESLIQRLQE 180 (329)
T ss_pred hHhCcHHHHh--hce-eeeCCCCCHHHHHHHHHH
Confidence 9999999999 994 899999999888777764
No 196
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.37 E-value=3.8e-06 Score=79.73 Aligned_cols=145 Identities=21% Similarity=0.331 Sum_probs=91.5
Q ss_pred ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-CCCCc
Q psy7780 138 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-ETLDP 216 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-~~Ld~ 216 (317)
.|+++||+..|-. .++.+|...+.+ |. + .+-.++-+...|.++++|+|+|.- ..|=|
T Consensus 146 GIlYvDEvnlL~d-----------~lvd~LLd~aae--G~-n--------~vereGisi~hpa~fvligTmNPEeGeLrp 203 (423)
T COG1239 146 GILYVDEVNLLDD-----------HLVDALLDVAAE--GV-N--------DVEREGISIRHPARFLLIGTMNPEEGELRP 203 (423)
T ss_pred CEEEEeccccccH-----------HHHHHHHHHHHh--CC-c--------eeeeCceeeccCccEEEEeecCccccccch
Confidence 5999999988742 244555555443 10 0 122344455667899999999985 45889
Q ss_pred cccCCCcceeEEEeCCC-CHHHHHHHHHHHhcCCCCCcCCCH-------------------------------HHHHHh-
Q psy7780 217 ALIRPGRIDRKIEFPLP-DEKTKRRIFNIHTSRMTLAEDVNL-------------------------------QELIMA- 263 (317)
Q Consensus 217 al~rpgRf~~~I~~~~P-~~~~r~~Il~~~l~~~~~~~~~~~-------------------------------~~ia~~- 263 (317)
.|+. ||...|.+..| +.++|.+|.++.+.-. ..++.-+ ..++..
T Consensus 204 qLlD--Rfg~~v~~~~~~~~~~rv~Ii~r~~~f~-~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~ 280 (423)
T COG1239 204 QLLD--RFGLEVDTHYPLDLEERVEIIRRRLAFE-AVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELC 280 (423)
T ss_pred hhHh--hhcceeeccCCCCHHHHHHHHHHHHHhh-cCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHH
Confidence 9999 99999999887 6799999998765421 1111000 111111
Q ss_pred ----CCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhcc
Q psy7780 264 ----KDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKE 309 (317)
Q Consensus 264 ----t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~~ 309 (317)
..| .-+|+ .+.+.|...|.-.++..++.+|+.+|++-.+.++..
T Consensus 281 ~~~~v~g-~radi-~~~r~a~a~aa~~Gr~~v~~~Di~~a~~l~l~hR~~ 328 (423)
T COG1239 281 ARLAVDG-HRADI-VVVRAAKALAALRGRTEVEEEDIREAAELALLHRRR 328 (423)
T ss_pred HHhccCC-Cchhh-HHHHHHHHHHHhcCceeeehhhHHHHHhhhhhhhhc
Confidence 011 11122 233334455666788999999999999998877654
No 197
>KOG0990|consensus
Probab=98.32 E-value=3.9e-06 Score=76.88 Aligned_cols=133 Identities=17% Similarity=0.209 Sum_probs=83.3
Q ss_pred eEeechh--hHHHhhhcCCCchh---hhhhcCCce------EEEEechhhhhhhcCCc-hHHHHHHHHHHHh-------h
Q psy7780 75 TFLRVVG--SELIQKYLGDGPKL---AVANQTSAT------FLRVVGSELIQKYLGDG-PKLVRELFRVAEE-------H 135 (317)
Q Consensus 75 ~~~~i~g--~~Ll~G~pGtGKT~---aiA~~~~~~------~~~v~~s~l~~~~~g~~-~~~l~~~f~~a~~-------~ 135 (317)
.|.+.++ +.|||||||||||+ +.|..+-.+ +..+++|+ -.|.. .+.=...|..++. .
T Consensus 55 ~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd----~rgid~vr~qi~~fast~~~~~fst~~ 130 (360)
T KOG0990|consen 55 RYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASD----DRGIDPVRQQIHLFASTQQPTTYSTHA 130 (360)
T ss_pred HhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccC----ccCCcchHHHHHHHHhhccceeccccC
Confidence 3444444 78999999999998 777766543 11122221 11211 2233345666663 2
Q ss_pred CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCC
Q psy7780 136 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215 (317)
Q Consensus 136 ~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld 215 (317)
.+-.|++||.|+.... .|..|.. .+..+. .++.+...+|++..+.
T Consensus 131 ~fKlvILDEADaMT~~-----------AQnALRR---viek~t---------------------~n~rF~ii~n~~~ki~ 175 (360)
T KOG0990|consen 131 AFKLVILDEADAMTRD-----------AQNALRR---VIEKYT---------------------ANTRFATISNPPQKIH 175 (360)
T ss_pred ceeEEEecchhHhhHH-----------HHHHHHH---HHHHhc---------------------cceEEEEeccChhhcC
Confidence 5678999999987432 2333333 222222 4456778889999999
Q ss_pred ccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC
Q psy7780 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM 249 (317)
Q Consensus 216 ~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~ 249 (317)
|++++ ||. ...|.+.+.++-...+..+...-
T Consensus 176 pa~qs--Rct-rfrf~pl~~~~~~~r~shi~e~e 206 (360)
T KOG0990|consen 176 PAQQS--RCT-RFRFAPLTMAQQTERQSHIRESE 206 (360)
T ss_pred chhhc--ccc-cCCCCCCChhhhhhHHHHHHhcc
Confidence 99999 996 66777777777777776665543
No 198
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.32 E-value=1e-07 Score=82.97 Aligned_cols=75 Identities=20% Similarity=0.328 Sum_probs=28.8
Q ss_pred ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----
Q psy7780 138 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE----- 212 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~----- 212 (317)
.|||+||+-.+- .+++..++.-++.-... +.....+...|.++++|+|+|.-.
T Consensus 108 GVLflDE~~ef~--------------~~vld~Lr~ple~g~v~--------i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~ 165 (206)
T PF01078_consen 108 GVLFLDELNEFD--------------RSVLDALRQPLEDGEVT--------ISRAGGSVTYPARFLLVAAMNPCPCGYYG 165 (206)
T ss_dssp SEEEECETTTS---------------HHHHHHHHHHHHHSBEE--------EEETTEEEEEB--EEEEEEE-S-------
T ss_pred CEEEechhhhcC--------------HHHHHHHHHHHHCCeEE--------EEECCceEEEecccEEEEEeccccccccc
Confidence 599999997762 23444444444332211 223445567778999999998621
Q ss_pred ------------------CCCccccCCCcceeEEEeCCCCHH
Q psy7780 213 ------------------TLDPALIRPGRIDRKIEFPLPDEK 236 (317)
Q Consensus 213 ------------------~Ld~al~rpgRf~~~I~~~~P~~~ 236 (317)
.|.-.|+. |||..+.++..+.+
T Consensus 166 ~~~~~C~Cs~~~~~~Y~~rlsgpllD--RiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 166 DPDNRCRCSPRQIRRYQSRLSGPLLD--RIDIHVEVPRVSYE 205 (206)
T ss_dssp ------------------------------------------
T ss_pred cccccccccccccccccccccccccc--cccccccccccccC
Confidence 14445666 77766666655443
No 199
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.30 E-value=1.1e-06 Score=82.43 Aligned_cols=129 Identities=15% Similarity=0.177 Sum_probs=85.3
Q ss_pred eechhhHHHhhhcCCCchh---hhhhcCCc-------------------------eEEEEechhhhhhhcC-----CchH
Q psy7780 77 LRVVGSELIQKYLGDGPKL---AVANQTSA-------------------------TFLRVVGSELIQKYLG-----DGPK 123 (317)
Q Consensus 77 ~~i~g~~Ll~G~pGtGKT~---aiA~~~~~-------------------------~~~~v~~s~l~~~~~g-----~~~~ 123 (317)
..+...+||+||+|+|||+ ++|+.+.+ .|+.++...-. ...| -+-.
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id 96 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKID 96 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHH
Confidence 3555568999999999998 44444321 35555432100 0011 2355
Q ss_pred HHHHHHHHHHhh----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCC
Q psy7780 124 LVRELFRVAEEH----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLP 199 (317)
Q Consensus 124 ~l~~~f~~a~~~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 199 (317)
.+|++.+.+... ..-|+++|+++.+-.. .+..+...+++..
T Consensus 97 ~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~-----------a~naLLk~LEep~------------------------ 141 (325)
T PRK08699 97 AVREIIDNVYLTSVRGGLRVILIHPAESMNLQ-----------AANSLLKVLEEPP------------------------ 141 (325)
T ss_pred HHHHHHHHHhhCcccCCceEEEEechhhCCHH-----------HHHHHHHHHHhCc------------------------
Confidence 678877777542 2358999999988432 2455555655521
Q ss_pred CCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHH
Q psy7780 200 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNI 244 (317)
Q Consensus 200 ~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~ 244 (317)
.++.+|.+|++++.+.+.+++ |+. .+.|++|+.++..+.+..
T Consensus 142 ~~~~~Ilvth~~~~ll~ti~S--Rc~-~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 142 PQVVFLLVSHAADKVLPTIKS--RCR-KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred CCCEEEEEeCChHhChHHHHH--Hhh-hhcCCCCCHHHHHHHHHh
Confidence 335577899999999999999 994 889999999988877754
No 200
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=5.3e-06 Score=77.47 Aligned_cols=105 Identities=18% Similarity=0.243 Sum_probs=70.0
Q ss_pred hHHHHHHHHHHHhhC----CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccccc
Q psy7780 122 PKLVRELFRVAEEHA----PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIY 197 (317)
Q Consensus 122 ~~~l~~~f~~a~~~~----P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 197 (317)
-..||++.+.+.... --|++||++|.+... ..+.|...|++ -.
T Consensus 95 idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~-----------AaNaLLKtLEE---Pp------------------- 141 (319)
T PRK08769 95 IEQVREISQKLALTPQYGIAQVVIVDPADAINRA-----------ACNALLKTLEE---PS------------------- 141 (319)
T ss_pred HHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHH-----------HHHHHHHHhhC---CC-------------------
Confidence 446777766554332 259999999998432 23444445544 21
Q ss_pred CCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCH
Q psy7780 198 LPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSG 269 (317)
Q Consensus 198 ~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~ 269 (317)
.++++|.+|+.++.|.|.+++ |+. .+.|+.|+.++-.+.+... +.+ ..+...++..+.|-.+
T Consensus 142 --~~~~fiL~~~~~~~lLpTIrS--RCq-~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~ 203 (319)
T PRK08769 142 --PGRYLWLISAQPARLPATIRS--RCQ-RLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPG 203 (319)
T ss_pred --CCCeEEEEECChhhCchHHHh--hhe-EeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHH
Confidence 567899999999999999999 995 8899999998888777642 222 1123345556666433
No 201
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.28 E-value=2.8e-06 Score=79.52 Aligned_cols=122 Identities=16% Similarity=0.214 Sum_probs=82.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||+|+||++ ++|+.+-+ .|+.+...+ ++ ..+-..+|++-+.+..
T Consensus 26 A~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~--~I~id~iR~l~~~~~~ 101 (325)
T PRK06871 26 ALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NK--DIGVDQVREINEKVSQ 101 (325)
T ss_pred eEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CC--CCCHHHHHHHHHHHhh
Confidence 57899999999998 44444422 133332110 01 1234567776555543
Q ss_pred ----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 ----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
..--|++||++|.+... ..+.|...|++ - |.++++|.+|+.
T Consensus 102 ~~~~g~~KV~iI~~a~~m~~~-----------AaNaLLKtLEE---P---------------------p~~~~fiL~t~~ 146 (325)
T PRK06871 102 HAQQGGNKVVYIQGAERLTEA-----------AANALLKTLEE---P---------------------RPNTYFLLQADL 146 (325)
T ss_pred ccccCCceEEEEechhhhCHH-----------HHHHHHHHhcC---C---------------------CCCeEEEEEECC
Confidence 22359999999988432 23445555544 2 267889999999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHH
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIH 245 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~ 245 (317)
++.|.|.+++ |+. .+.|++|+.++..+.+...
T Consensus 147 ~~~llpTI~S--RC~-~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 147 SAALLPTIYS--RCQ-TWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred hHhCchHHHh--hce-EEeCCCCCHHHHHHHHHHH
Confidence 9999999999 995 8899999999888888764
No 202
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=2e-06 Score=80.92 Aligned_cols=122 Identities=17% Similarity=0.174 Sum_probs=81.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||+|+||++ ++|..+-+ .++.+.... -+ ...+-..+|++-+.+..
T Consensus 26 A~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~--~~I~idqiR~l~~~~~~ 102 (334)
T PRK07993 26 ALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK-GK--SSLGVDAVREVTEKLYE 102 (334)
T ss_pred EEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc-cc--ccCCHHHHHHHHHHHhh
Confidence 57899999999998 44444422 122232110 00 01234466666665543
Q ss_pred ----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 ----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
...-|++||++|.+... ..+.|...|++ - |.+.++|.+|++
T Consensus 103 ~~~~g~~kV~iI~~ae~m~~~-----------AaNaLLKtLEE---P---------------------p~~t~fiL~t~~ 147 (334)
T PRK07993 103 HARLGGAKVVWLPDAALLTDA-----------AANALLKTLEE---P---------------------PENTWFFLACRE 147 (334)
T ss_pred ccccCCceEEEEcchHhhCHH-----------HHHHHHHHhcC---C---------------------CCCeEEEEEECC
Confidence 33459999999998532 23445455544 2 167889999999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHH
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNI 244 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~ 244 (317)
++.|.|.+++ |+. .+.|++|+.++..+.+..
T Consensus 148 ~~~lLpTIrS--RCq-~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 148 PARLLATLRS--RCR-LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred hhhChHHHHh--ccc-cccCCCCCHHHHHHHHHH
Confidence 9999999999 996 689999999888887764
No 203
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.27 E-value=4.9e-06 Score=83.05 Aligned_cols=182 Identities=19% Similarity=0.250 Sum_probs=98.0
Q ss_pred CCceEeechh--------------------hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhh-----hcCC
Q psy7780 72 TSATFLRVVG--------------------SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQK-----YLGD 120 (317)
Q Consensus 72 ~~~~~~~i~g--------------------~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~-----~~g~ 120 (317)
...+|+++.| |+|++|.+||||++ ++... .+.+|+.++|+.+-.. .+|.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~ 278 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGH 278 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCC
Confidence 4567777777 89999999999999 33222 2469999999875331 1221
Q ss_pred ch-------HHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccc
Q psy7780 121 GP-------KLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSL 193 (317)
Q Consensus 121 ~~-------~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~ 193 (317)
.. ..-..+|+.|. ...|||||||.+... .+..|..+++.-. +.....
T Consensus 279 ~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~~~-----------~Q~~Ll~~l~~~~-~~~~g~----------- 332 (520)
T PRK10820 279 APGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMSPR-----------MQAKLLRFLNDGT-FRRVGE----------- 332 (520)
T ss_pred CCCCcCCcccCCCChhhhcC---CCEEEEeChhhCCHH-----------HHHHHHHHHhcCC-cccCCC-----------
Confidence 11 00112344332 368999999998432 3555556654310 111000
Q ss_pred ccccCCCCeEEEEEcCCCC-------CCCccccCCCcce-eEEEeCCCCH--HHHHHHHHHHhcC----CCCC-cCCCHH
Q psy7780 194 TLIYLPGDVKVIMATNRIE-------TLDPALIRPGRID-RKIEFPLPDE--KTKRRIFNIHTSR----MTLA-EDVNLQ 258 (317)
Q Consensus 194 ~~~~~~~~v~vI~tTN~~~-------~Ld~al~rpgRf~-~~I~~~~P~~--~~r~~Il~~~l~~----~~~~-~~~~~~ 258 (317)
......++.+|++|+..- .+.+.|.. |+. ..|.+|+..+ +....+++.++.+ .+.. .....+
T Consensus 333 -~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~ 409 (520)
T PRK10820 333 -DHEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAAD 409 (520)
T ss_pred -CcceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 000114678999887642 24455665 654 4556665532 3444455555443 2211 123333
Q ss_pred HHHHhC-CCC--CHHHHHHHHHHHHHH
Q psy7780 259 ELIMAK-DDL--SGADIKAICTEAGLM 282 (317)
Q Consensus 259 ~ia~~t-~g~--s~~dl~~l~~~A~~~ 282 (317)
.+.... ..+ +-++|++++.+|...
T Consensus 410 a~~~L~~y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 410 LNTVLTRYGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 333221 222 567788888877654
No 204
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.26 E-value=1.3e-05 Score=70.90 Aligned_cols=154 Identities=18% Similarity=0.264 Sum_probs=100.2
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhC-CceEeecccccccccccC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA-PSIVFIDEIDAVGTKRYD 154 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~-P~Ii~iDEiD~l~~~r~~ 154 (317)
.+|++|.-|||||+ |+-++. +..+++|+-.++.. +-.+++..+... +-|||+|++- +.
T Consensus 87 nVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLS------Fe 151 (287)
T COG2607 87 NVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLAT---------LPDLVELLRARPEKFILFCDDLS------FE 151 (287)
T ss_pred ceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhh---------HHHHHHHHhcCCceEEEEecCCC------CC
Confidence 78999999999999 555554 45688888877643 344555554432 4799999863 11
Q ss_pred CCCCchhHHHHHHHHHHHHhcC-CCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCc-----------------
Q psy7780 155 SNSGGEREIQRTMLELLNQLDG-FDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDP----------------- 216 (317)
Q Consensus 155 ~~~~~~~~~~~~l~~ll~~ld~-~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~----------------- 216 (317)
.+.. .-+.|. ..+|| +... |.+|++-+|+||-..|++
T Consensus 152 ~gd~----~yK~LK---s~LeG~ve~r------------------P~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~ea 206 (287)
T COG2607 152 EGDD----AYKALK---SALEGGVEGR------------------PANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEA 206 (287)
T ss_pred CCch----HHHHHH---HHhcCCcccC------------------CCeEEEEEecCCcccccHhhhhCCCcccccChhHH
Confidence 1111 123333 33454 3322 378999999999877763
Q ss_pred -----cccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCC-CHHHH----HHhCCCCCHHHHHHHHH
Q psy7780 217 -----ALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDV-NLQEL----IMAKDDLSGADIKAICT 277 (317)
Q Consensus 217 -----al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~-~~~~i----a~~t~g~s~~dl~~l~~ 277 (317)
++.. ||...+.|++++.++-..|+..+.++.+++-+. .+..- |..-.|-||+--.+.++
T Consensus 207 veEKlSlSD--RFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSGR~A~QF~~ 275 (287)
T COG2607 207 VEEKLSLSD--RFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRSGRVAWQFIR 275 (287)
T ss_pred HHHhhchhh--hcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCccHhHHHHHH
Confidence 2344 999999999999999999999999888776421 12111 22234556665555544
No 205
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.25 E-value=3.5e-06 Score=87.40 Aligned_cols=39 Identities=21% Similarity=0.038 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q psy7780 267 LSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 267 ~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~ 305 (317)
.|.+.|+++++-|-..|--+-+..|+.+|++.|++-+..
T Consensus 768 iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai~L~~~ 806 (915)
T PTZ00111 768 VSSRMISSIIRISVSLARMRLSTVVTPADALQAVQIVKS 806 (915)
T ss_pred ccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHHHHHHH
Confidence 679999999998877777777899999999999987654
No 206
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.25 E-value=1.4e-06 Score=78.35 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=46.9
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcC---CchHHHHHHHHHHHhhCCceEeeccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLG---DGPKLVRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g---~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
+.+|+|+||||||+ ++|+++ +..++.++.++++....+ ........+++... ...+|+|||++...
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~ 175 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT 175 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC
Confidence 67899999999998 888777 778899999888764322 11122334444433 35799999998753
No 207
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.25 E-value=4.9e-06 Score=74.32 Aligned_cols=135 Identities=13% Similarity=0.124 Sum_probs=77.3
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCch
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGE 160 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~ 160 (317)
.++||+|||||. ++|+.+|.+++..+|++-++ ...+..+|.=+... -+-++|||++.+-
T Consensus 36 ~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl~----------- 97 (231)
T PF12774_consen 36 ALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRLS----------- 97 (231)
T ss_dssp EEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCSS-----------
T ss_pred CCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhhh-----------
Confidence 368999999998 99999999999999998654 56777788655544 3899999999873
Q ss_pred hHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC----CCCCCccccCCCcceeEEEeCCCCHH
Q psy7780 161 REIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR----IETLDPALIRPGRIDRKIEFPLPDEK 236 (317)
Q Consensus 161 ~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~----~~~Ld~al~rpgRf~~~I~~~~P~~~ 236 (317)
.++.+++.+.+..+...-... ............+..+.-++.|.|. -..||+.|+. -| +-+.+-.||.+
T Consensus 98 ~~vLS~i~~~i~~i~~al~~~----~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~--lF-Rpvam~~PD~~ 170 (231)
T PF12774_consen 98 EEVLSVISQQIQSIQDALRAK----QKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKA--LF-RPVAMMVPDLS 170 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT----SSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCT--TE-EEEE--S--HH
T ss_pred HHHHHHHHHHHHHHHHhhccc----ccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHH--Hh-heeEEeCCCHH
Confidence 233445544444332110000 0112223333444455666667763 3569999986 55 68999999887
Q ss_pred HHHHHHH
Q psy7780 237 TKRRIFN 243 (317)
Q Consensus 237 ~r~~Il~ 243 (317)
...+++-
T Consensus 171 ~I~ei~L 177 (231)
T PF12774_consen 171 LIAEILL 177 (231)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
No 208
>PRK08181 transposase; Validated
Probab=98.23 E-value=1.4e-06 Score=79.52 Aligned_cols=82 Identities=15% Similarity=0.165 Sum_probs=53.1
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhhhcC-CchHHHHHHHHHHHhhCCceEeecccccccccccC
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQKYLG-DGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYD 154 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~~~g-~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~ 154 (317)
..+|+||||||||. ++|++ .|..++.++..+++..... .......+.++... .+.+|+|||++.+....
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~~~-- 183 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTKDQ-- 183 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccCCH--
Confidence 57899999999998 66643 4778888898888875421 11123334444433 35799999998764321
Q ss_pred CCCCchhHHHHHHHHHHHHh
Q psy7780 155 SNSGGEREIQRTMLELLNQL 174 (317)
Q Consensus 155 ~~~~~~~~~~~~l~~ll~~l 174 (317)
.....+.++++..
T Consensus 184 -------~~~~~Lf~lin~R 196 (269)
T PRK08181 184 -------AETSVLFELISAR 196 (269)
T ss_pred -------HHHHHHHHHHHHH
Confidence 2244566666653
No 209
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.22 E-value=1.9e-06 Score=84.09 Aligned_cols=179 Identities=20% Similarity=0.301 Sum_probs=97.6
Q ss_pred CCceEeechh--------------------hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhh---------
Q psy7780 72 TSATFLRVVG--------------------SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQK--------- 116 (317)
Q Consensus 72 ~~~~~~~i~g--------------------~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~--------- 116 (317)
...+|++|.| ++|+.|-+||||.+ ++-+.. +-||+.+||..+-..
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGy 319 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGY 319 (560)
T ss_pred cccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCc
Confidence 4468999999 88999999999999 444444 569999999653221
Q ss_pred ----hcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcc
Q psy7780 117 ----YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSS 192 (317)
Q Consensus 117 ----~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~ 192 (317)
|.|....--.-+|+.|.. .-||||||..+- -.+|.-|...|.+-. +..-
T Consensus 320 e~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgemp-----------l~LQaKLLRVLQEke-i~rv------------ 372 (560)
T COG3829 320 EKGAFTGASKGGKPGLFELANG---GTLFLDEIGEMP-----------LPLQAKLLRVLQEKE-IERV------------ 372 (560)
T ss_pred CCccccccccCCCCcceeeccC---CeEEehhhccCC-----------HHHHHHHHHHHhhce-EEec------------
Confidence 122211112234555543 489999998763 234555555555411 1100
Q ss_pred cccccCCCCeEEEEEcCCCCCCCccccCCCcce-------eEEEeCCCCH----HHHHHHHHHHhcC----CCCC-cCCC
Q psy7780 193 LTLIYLPGDVKVIMATNRIETLDPALIRPGRID-------RKIEFPLPDE----KTKRRIFNIHTSR----MTLA-EDVN 256 (317)
Q Consensus 193 ~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~-------~~I~~~~P~~----~~r~~Il~~~l~~----~~~~-~~~~ 256 (317)
+..-..+-+|.+|+|||+. |-.++ .-|+|. .++.+..|-. ++...+...++.+ ++.. ..+.
T Consensus 373 G~t~~~~vDVRIIAATN~n--L~~~i-~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls 449 (560)
T COG3829 373 GGTKPIPVDVRIIAATNRN--LEKMI-AEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLS 449 (560)
T ss_pred CCCCceeeEEEEEeccCcC--HHHHH-hcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCC
Confidence 1111122579999999982 22222 224442 1333444433 3333344444443 2222 2222
Q ss_pred HHH---HHHh-CCCCCHHHHHHHHHHHHH
Q psy7780 257 LQE---LIMA-KDDLSGADIKAICTEAGL 281 (317)
Q Consensus 257 ~~~---ia~~-t~g~s~~dl~~l~~~A~~ 281 (317)
-+. +.+. =.| +-++|.|++.+|..
T Consensus 450 ~~a~~~L~~y~WPG-NVRELeNviER~v~ 477 (560)
T COG3829 450 PDALALLLRYDWPG-NVRELENVIERAVN 477 (560)
T ss_pred HHHHHHHHhCCCCc-hHHHHHHHHHHHHh
Confidence 222 2222 234 67899999998886
No 210
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.20 E-value=5.2e-06 Score=85.58 Aligned_cols=171 Identities=20% Similarity=0.281 Sum_probs=90.2
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhh-----hcCC--------chHHHHHHHHHHHhhCCceEee
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQK-----YLGD--------GPKLVRELFRVAEEHAPSIVFI 142 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~-----~~g~--------~~~~l~~~f~~a~~~~P~Ii~i 142 (317)
|+|+.|++|||||+ ++... .+.+|+.++|..+-.. .+|. ..... ..|+.| ...+|||
T Consensus 401 pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~-g~le~a---~~GtL~L 476 (686)
T PRK15429 401 TVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRI-GRFELA---DKSSLFL 476 (686)
T ss_pred CEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccchh-hHHHhc---CCCeEEE
Confidence 89999999999998 44433 3579999999865321 2221 11111 234333 2469999
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC--C-----CC
Q psy7780 143 DEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE--T-----LD 215 (317)
Q Consensus 143 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~--~-----Ld 215 (317)
||||.+-. ..+..|..++..-. +..... ....+.++.+|++|+..- . +.
T Consensus 477 dei~~L~~-----------~~Q~~L~~~l~~~~-~~~~g~------------~~~~~~~~RiI~~t~~~l~~~~~~~~f~ 532 (686)
T PRK15429 477 DEVGDMPL-----------ELQPKLLRVLQEQE-FERLGS------------NKIIQTDVRLIAATNRDLKKMVADREFR 532 (686)
T ss_pred echhhCCH-----------HHHHHHHHHHHhCC-EEeCCC------------CCcccceEEEEEeCCCCHHHHHHcCccc
Confidence 99999843 23555555554311 110000 001124688999998742 1 22
Q ss_pred ccccCCCcce-eEEEeCCCC--HHHHHHHHHHHhcCC----CCC-cCCCH---HHHHHhCCCCCHHHHHHHHHHHHHH
Q psy7780 216 PALIRPGRID-RKIEFPLPD--EKTKRRIFNIHTSRM----TLA-EDVNL---QELIMAKDDLSGADIKAICTEAGLM 282 (317)
Q Consensus 216 ~al~rpgRf~-~~I~~~~P~--~~~r~~Il~~~l~~~----~~~-~~~~~---~~ia~~t~g~s~~dl~~l~~~A~~~ 282 (317)
+.|.. |+. ..|.+|+.. .++...+++.++.+. +.. ..+.- ..+....==-+-++|++++++|+..
T Consensus 533 ~~L~~--~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~ 608 (686)
T PRK15429 533 SDLYY--RLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLL 608 (686)
T ss_pred HHHHh--ccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHh
Confidence 23333 442 345555542 244444566665432 111 11222 2222221112678899999988764
No 211
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.19 E-value=5.1e-06 Score=70.61 Aligned_cols=103 Identities=26% Similarity=0.416 Sum_probs=59.5
Q ss_pred hhHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhh-----hcCCch-------HHHHHHHHHHHhhCCceEee
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQK-----YLGDGP-------KLVRELFRVAEEHAPSIVFI 142 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~-----~~g~~~-------~~l~~~f~~a~~~~P~Ii~i 142 (317)
.|+|++|.+||||++ ++.+.. +.+|+.|+|+.+-.. .+|... ..-.-+|+.|.. .+|||
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~---GtL~L 99 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANG---GTLFL 99 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTT---SEEEE
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccc---eEEee
Confidence 389999999999999 555544 469999999875332 122210 111245555544 59999
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 143 DEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 143 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
|||+.+.. ..|.-|..+|+.-. +...... ...+-++.+|++||.
T Consensus 100 d~I~~L~~-----------~~Q~~Ll~~l~~~~-~~~~g~~------------~~~~~~~RiI~st~~ 143 (168)
T PF00158_consen 100 DEIEDLPP-----------ELQAKLLRVLEEGK-FTRLGSD------------KPVPVDVRIIASTSK 143 (168)
T ss_dssp ETGGGS-H-----------HHHHHHHHHHHHSE-EECCTSS------------SEEE--EEEEEEESS
T ss_pred cchhhhHH-----------HHHHHHHHHHhhch-hcccccc------------ccccccceEEeecCc
Confidence 99999853 34667777776421 1100000 011157899999986
No 212
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.18 E-value=5.3e-06 Score=82.58 Aligned_cols=172 Identities=20% Similarity=0.204 Sum_probs=93.8
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhh-----hcCCchH-------HHHHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQK-----YLGDGPK-------LVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~-----~~g~~~~-------~l~~~f~~a~~~~P~Ii~iD 143 (317)
|+|++|.+||||++ ++... .+.+|+.++|+.+-.. .+|.... .-.-.|+.| ....||||
T Consensus 212 pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ld 288 (509)
T PRK05022 212 NVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLD 288 (509)
T ss_pred cEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccccCCCcccCCcchhhc---CCCEEEec
Confidence 78899999999999 44443 4569999999876321 1221100 001124333 24689999
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhc--CCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-------CC
Q psy7780 144 EIDAVGTKRYDSNSGGEREIQRTMLELLNQLD--GFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-------TL 214 (317)
Q Consensus 144 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld--~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-------~L 214 (317)
|||.+... .+..|..++..-. ...+. ...+.++.+|++||+.- .+
T Consensus 289 eI~~L~~~-----------~Q~~Ll~~l~~~~~~~~g~~---------------~~~~~~~RiI~~t~~~l~~~~~~~~f 342 (509)
T PRK05022 289 EIGELPLA-----------LQAKLLRVLQYGEIQRVGSD---------------RSLRVDVRVIAATNRDLREEVRAGRF 342 (509)
T ss_pred ChhhCCHH-----------HHHHHHHHHhcCCEeeCCCC---------------cceecceEEEEecCCCHHHHHHcCCc
Confidence 99998532 3455555554311 11100 00114678999998742 24
Q ss_pred CccccCCCcce-eEEEeCCCC--HHHHHHHHHHHhcCC----CCC-cCCCHHHHHHh-CCC--CCHHHHHHHHHHHHHHH
Q psy7780 215 DPALIRPGRID-RKIEFPLPD--EKTKRRIFNIHTSRM----TLA-EDVNLQELIMA-KDD--LSGADIKAICTEAGLMA 283 (317)
Q Consensus 215 d~al~rpgRf~-~~I~~~~P~--~~~r~~Il~~~l~~~----~~~-~~~~~~~ia~~-t~g--~s~~dl~~l~~~A~~~a 283 (317)
.+.|.. |+. ..|++|+.. .++...+++.++++. +.. ..++-+.+... ... -+-++|++++++|+..+
T Consensus 343 ~~dL~~--rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 343 RADLYH--RLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLA 420 (509)
T ss_pred cHHHHh--cccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhc
Confidence 444444 553 346666653 244555556555432 111 12232222222 122 26789999999988765
Q ss_pred H
Q psy7780 284 L 284 (317)
Q Consensus 284 ~ 284 (317)
.
T Consensus 421 ~ 421 (509)
T PRK05022 421 R 421 (509)
T ss_pred C
Confidence 4
No 213
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.18 E-value=3.6e-06 Score=77.08 Aligned_cols=140 Identities=16% Similarity=0.291 Sum_probs=72.9
Q ss_pred hHHHhhhcCCCchh----hhhhcCCce--EEEEechhhhhhhcCCchHHHHHHHHHH-----------HhhCCceEeecc
Q psy7780 82 SELIQKYLGDGPKL----AVANQTSAT--FLRVVGSELIQKYLGDGPKLVRELFRVA-----------EEHAPSIVFIDE 144 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----aiA~~~~~~--~~~v~~s~l~~~~~g~~~~~l~~~f~~a-----------~~~~P~Ii~iDE 144 (317)
|.||.||+|||||+ .+.+.-+.. ...++++.... ...++.+.+.. .....+|+||||
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tt------s~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDD 108 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTT------SNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDD 108 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHH------HHHHHHCCCTTECECTTEEEEEESSSEEEEEEET
T ss_pred cEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCC------HHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecc
Confidence 88999999999999 343322222 33454443211 22222222211 112247999999
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC---CCCccccCC
Q psy7780 145 IDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE---TLDPALIRP 221 (317)
Q Consensus 145 iD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~---~Ld~al~rp 221 (317)
+..-.+.. -+.. .....|.++++. .|+..... . ....=.++.+|+|.|... .+++.++|
T Consensus 109 lN~p~~d~----ygtq-~~iElLRQ~i~~-~g~yd~~~----------~-~~~~i~~i~~vaa~~p~~Gr~~is~R~~r- 170 (272)
T PF12775_consen 109 LNMPQPDK----YGTQ-PPIELLRQLIDY-GGFYDRKK----------L-EWKSIEDIQFVAAMNPTGGRNPISPRFLR- 170 (272)
T ss_dssp TT-S---T----TS---HHHHHHHHHHHC-SEEECTTT----------T-EEEEECSEEEEEEESSTTT--SHHHHHHT-
T ss_pred cCCCCCCC----CCCc-CHHHHHHHHHHh-cCcccCCC----------c-EEEEEeeeEEEEecCCCCCCCCCChHHhh-
Confidence 98654332 1222 123344455443 23322100 0 011115788999988643 48888998
Q ss_pred CcceeEEEeCCCCHHHHHHHHHHHhc
Q psy7780 222 GRIDRKIEFPLPDEKTKRRIFNIHTS 247 (317)
Q Consensus 222 gRf~~~I~~~~P~~~~r~~Il~~~l~ 247 (317)
.|. .+.++.|+.+.-..|+..++.
T Consensus 171 -~f~-i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 171 -HFN-ILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp -TEE-EEE----TCCHHHHHHHHHHH
T ss_pred -heE-EEEecCCChHHHHHHHHHHHh
Confidence 885 899999999999988877664
No 214
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.13 E-value=8.5e-06 Score=76.80 Aligned_cols=51 Identities=14% Similarity=0.012 Sum_probs=41.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc-------eEEEEec----hhhhhhhcCCchHHHHHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA-------TFLRVVG----SELIQKYLGDGPKLVRELFRVA 132 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~-------~~~~v~~----s~l~~~~~g~~~~~l~~~f~~a 132 (317)
..+|.||||||||+ ++|+.++. +++.+.. +......++-.+..+|..|...
T Consensus 80 il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~Pl~l~p~~~r~~~~~~ 144 (361)
T smart00763 80 ILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHEDPLHLFPDELREDLEDE 144 (361)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccCCcccCCHHHHHHHHHH
Confidence 46899999999999 99999987 8999988 7766666666677777777544
No 215
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.13 E-value=1.8e-06 Score=75.87 Aligned_cols=120 Identities=15% Similarity=0.228 Sum_probs=62.3
Q ss_pred hHHHHHHHHHHHhhC-CceEeeccccccc-ccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCC
Q psy7780 122 PKLVRELFRVAEEHA-PSIVFIDEIDAVG-TKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLP 199 (317)
Q Consensus 122 ~~~l~~~f~~a~~~~-P~Ii~iDEiD~l~-~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~ 199 (317)
...+..+++...+.. ..||+|||++.+. ..+ ... ..+..+...++.....
T Consensus 103 ~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~------~~~---~~~~~l~~~~~~~~~~------------------- 154 (234)
T PF01637_consen 103 FSALERLLEKLKKKGKKVIIVIDEFQYLAIASE------EDK---DFLKSLRSLLDSLLSQ------------------- 154 (234)
T ss_dssp G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT------TTH---HHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc------chH---HHHHHHHHHHhhcccc-------------------
Confidence 455777777766543 4899999999998 222 112 2333444444432222
Q ss_pred CCeEEEEEcCCCC------CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCC-C-CcCCCHHHHHHhCCCCCHHH
Q psy7780 200 GDVKVIMATNRIE------TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMT-L-AEDVNLQELIMAKDDLSGAD 271 (317)
Q Consensus 200 ~~v~vI~tTN~~~------~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~-~-~~~~~~~~ia~~t~g~s~~d 271 (317)
.++.+|.++.... .-...+.. |+.. +.+++.+.++..++++..+.... + .++.+++.+...|.|. |+-
T Consensus 155 ~~~~~v~~~S~~~~~~~~~~~~~~~~~--~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~-P~~ 230 (234)
T PF01637_consen 155 QNVSIVITGSSDSLMEEFLDDKSPLFG--RFSH-IELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGN-PRY 230 (234)
T ss_dssp TTEEEEEEESSHHHHHHTT-TTSTTTT-----E-EEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT--HHH
T ss_pred CCceEEEECCchHHHHHhhcccCcccc--ccce-EEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCC-HHH
Confidence 4444444443321 12233444 8876 99999999999999999876651 1 2455677777777774 554
Q ss_pred HH
Q psy7780 272 IK 273 (317)
Q Consensus 272 l~ 273 (317)
|.
T Consensus 231 l~ 232 (234)
T PF01637_consen 231 LQ 232 (234)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 216
>PRK12377 putative replication protein; Provisional
Probab=98.13 E-value=3e-06 Score=76.49 Aligned_cols=81 Identities=11% Similarity=0.213 Sum_probs=50.7
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCC--chHHHHHHHHHHHhhCCceEeeccccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGD--GPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRY 153 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~--~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~ 153 (317)
+.+|+|+||||||+ |+|+++ +..++.++..+++...... ......++++.. ....+|+|||++....+.
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~s~- 179 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRETK- 179 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCCCH-
Confidence 56899999999998 777776 6778888888877643210 000112333333 235799999997653221
Q ss_pred CCCCCchhHHHHHHHHHHHH
Q psy7780 154 DSNSGGEREIQRTMLELLNQ 173 (317)
Q Consensus 154 ~~~~~~~~~~~~~l~~ll~~ 173 (317)
..+.+|.++++.
T Consensus 180 --------~~~~~l~~ii~~ 191 (248)
T PRK12377 180 --------NEQVVLNQIIDR 191 (248)
T ss_pred --------HHHHHHHHHHHH
Confidence 134566666665
No 217
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=4.5e-06 Score=80.41 Aligned_cols=140 Identities=16% Similarity=0.243 Sum_probs=84.6
Q ss_pred ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC----
Q psy7780 138 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET---- 213 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~---- 213 (317)
-|+||||+-.+- .++|..|-+-|+.-.- ..+....+...|.++.+|+++|..-.
T Consensus 285 GVLFLDElpef~--------------~~iLe~LR~PLE~g~i--------~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~ 342 (490)
T COG0606 285 GVLFLDELPEFK--------------RSILEALREPLENGKI--------IISRAGSKVTYPARFQLVAAMNPCPCGNLG 342 (490)
T ss_pred CEEEeeccchhh--------------HHHHHHHhCccccCcE--------EEEEcCCeeEEeeeeEEhhhcCCCCccCCC
Confidence 599999986541 1344444444432211 12333444556678999999987321
Q ss_pred -------------------CCccccCCCcceeEEEeCCCCHHHH--------------HHHHHHH------hcCCCCCcC
Q psy7780 214 -------------------LDPALIRPGRIDRKIEFPLPDEKTK--------------RRIFNIH------TSRMTLAED 254 (317)
Q Consensus 214 -------------------Ld~al~rpgRf~~~I~~~~P~~~~r--------------~~Il~~~------l~~~~~~~~ 254 (317)
|-..+++ |||..++++.++..++ ..+++.. ..+...+..
T Consensus 343 ~~~~~C~c~~~~~~~Y~~klSgp~lD--RiDl~vev~~~~~~e~~~~~~~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~ 420 (490)
T COG0606 343 APLRRCPCSPRQIKRYLNKLSGPFLD--RIDLMVEVPRLSAGELIRQVPTGESSAGVRERVAKAREAQIARAGRIGINAE 420 (490)
T ss_pred CCCCCcCCCHHHHHHHHHHhhHHHHh--hhhheecccCCCHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhhccCcchh
Confidence 3446788 9999999998763332 2222211 111101111
Q ss_pred ----------------CCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q psy7780 255 ----------------VNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKE 301 (317)
Q Consensus 255 ----------------~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~ 301 (317)
.++.+.+-..-++|.+....+++-|...|--++...|...|+.+|+.
T Consensus 421 l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKvarTiADL~g~~~i~~~hl~eAi~ 483 (490)
T COG0606 421 LSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVARTIADLEGSEQIERSHLAEAIS 483 (490)
T ss_pred cCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHHhhhhcccCcchhhHHHHHHHHh
Confidence 12222333445788888888888888888888888899999988875
No 218
>PF13173 AAA_14: AAA domain
Probab=98.09 E-value=1e-05 Score=65.42 Aligned_cols=64 Identities=20% Similarity=0.223 Sum_probs=40.8
Q ss_pred HHHhhhcCCCchh---hhhhcCC--ceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS--ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAV 148 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~--~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l 148 (317)
.+++||.|||||+ .+++++. ..++++++.+.......... +.+.|.......+.+|||||+..+
T Consensus 5 ~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 5 IILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 5689999999999 6666655 67888887765442111111 222222222225689999999877
No 219
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.08 E-value=9.1e-06 Score=68.63 Aligned_cols=111 Identities=22% Similarity=0.259 Sum_probs=68.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCC-----------------------ceEEEEechhhhhhhcCCchHHHHHHHHHHHhh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS-----------------------ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH 135 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~-----------------------~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~ 135 (317)
.+||+||+|+||++ ++|+.+- -.++.++...-.. .-....++++.+.+...
T Consensus 21 a~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~ 97 (162)
T PF13177_consen 21 ALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK---SIKIDQIREIIEFLSLS 97 (162)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS---SBSHHHHHHHHHHCTSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc---hhhHHHHHHHHHHHHHH
Confidence 46899999999998 4444331 1344443332100 11245677666665432
Q ss_pred ----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC
Q psy7780 136 ----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI 211 (317)
Q Consensus 136 ----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~ 211 (317)
..-|++|||+|.+.. +.+..|...|++ .. .++.+|.+|+.+
T Consensus 98 ~~~~~~KviiI~~ad~l~~-----------~a~NaLLK~LEe---pp---------------------~~~~fiL~t~~~ 142 (162)
T PF13177_consen 98 PSEGKYKVIIIDEADKLTE-----------EAQNALLKTLEE---PP---------------------ENTYFILITNNP 142 (162)
T ss_dssp -TTSSSEEEEEETGGGS-H-----------HHHHHHHHHHHS---TT---------------------TTEEEEEEES-G
T ss_pred HhcCCceEEEeehHhhhhH-----------HHHHHHHHHhcC---CC---------------------CCEEEEEEECCh
Confidence 245999999998843 234555555554 22 578899999999
Q ss_pred CCCCccccCCCcceeEEEeCCC
Q psy7780 212 ETLDPALIRPGRIDRKIEFPLP 233 (317)
Q Consensus 212 ~~Ld~al~rpgRf~~~I~~~~P 233 (317)
+.|.|.+++ |+- .+.|+++
T Consensus 143 ~~il~TI~S--Rc~-~i~~~~l 161 (162)
T PF13177_consen 143 SKILPTIRS--RCQ-VIRFRPL 161 (162)
T ss_dssp GGS-HHHHT--TSE-EEEE---
T ss_pred HHChHHHHh--hce-EEecCCC
Confidence 999999999 984 7777654
No 220
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=7.9e-06 Score=76.29 Aligned_cols=122 Identities=16% Similarity=0.184 Sum_probs=81.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc-----------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHhh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA-----------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEEH 135 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~-----------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~ 135 (317)
.+||+||.|+||++ ++|+.+-+ .|+.+.... .++ ..+-..+|++-+.+...
T Consensus 27 A~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~--~I~vdqiR~l~~~~~~~ 103 (319)
T PRK06090 27 ALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGK--SITVEQIRQCNRLAQES 103 (319)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCC--cCCHHHHHHHHHHHhhC
Confidence 57999999999998 44443321 233333211 000 01234566665555332
Q ss_pred ----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC
Q psy7780 136 ----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI 211 (317)
Q Consensus 136 ----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~ 211 (317)
.--|++||++|.+... ..+.|...|++ - |.++++|.+|+.+
T Consensus 104 ~~~~~~kV~iI~~ae~m~~~-----------AaNaLLKtLEE---P---------------------p~~t~fiL~t~~~ 148 (319)
T PRK06090 104 SQLNGYRLFVIEPADAMNES-----------ASNALLKTLEE---P---------------------APNCLFLLVTHNQ 148 (319)
T ss_pred cccCCceEEEecchhhhCHH-----------HHHHHHHHhcC---C---------------------CCCeEEEEEECCh
Confidence 2369999999998432 23444455544 2 1678899999999
Q ss_pred CCCCccccCCCcceeEEEeCCCCHHHHHHHHHH
Q psy7780 212 ETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNI 244 (317)
Q Consensus 212 ~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~ 244 (317)
+.|.|.+++ |+. .+.|+.|+.++..+.+..
T Consensus 149 ~~lLpTI~S--RCq-~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 149 KRLLPTIVS--RCQ-QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred hhChHHHHh--cce-eEeCCCCCHHHHHHHHHH
Confidence 999999999 995 899999999988888764
No 221
>PRK09183 transposase/IS protein; Provisional
Probab=98.05 E-value=6.3e-06 Score=74.95 Aligned_cols=67 Identities=15% Similarity=0.180 Sum_probs=44.9
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhhhcC-CchHHHHHHHHHHHhhCCceEeeccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQKYLG-DGPKLVRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~~~g-~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
..+|+||||||||+ +++.+ .|..+..+++.++...+.. .....+..+|... ...|.+++|||++...
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 57799999999999 55443 4778888888887754321 1112344555543 2356799999998653
No 222
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.05 E-value=1.4e-05 Score=66.08 Aligned_cols=93 Identities=19% Similarity=0.243 Sum_probs=50.2
Q ss_pred HHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhh----------------------hcCC--chHHHHHHHHHH
Q psy7780 83 ELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQK----------------------YLGD--GPKLVRELFRVA 132 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~----------------------~~g~--~~~~l~~~f~~a 132 (317)
.+++|+||+|||+ .++..+ +.+++.++...-... +... .....+..+..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 4689999999999 454444 456666655322110 0011 111122334556
Q ss_pred HhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhc
Q psy7780 133 EEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLD 175 (317)
Q Consensus 133 ~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld 175 (317)
....|.+++|||+..+.........+......+.+..++....
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 124 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERAR 124 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Confidence 6777899999999998754321001122333445555555543
No 223
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.05 E-value=7.1e-06 Score=79.66 Aligned_cols=169 Identities=21% Similarity=0.326 Sum_probs=92.2
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhh-----hcC--------CchHHHHHHHHHHHhhCCceEee
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQK-----YLG--------DGPKLVRELFRVAEEHAPSIVFI 142 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~-----~~g--------~~~~~l~~~f~~a~~~~P~Ii~i 142 (317)
++|+.|.+||||-+ ++.+.. +.||+.|||..+-.. .+| ...+.. -.|+.|.. ..|||
T Consensus 166 ~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~-G~fE~A~G---GTLfL 241 (464)
T COG2204 166 SVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRI-GRFEQANG---GTLFL 241 (464)
T ss_pred CEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccccC-cceeEcCC---ceEEe
Confidence 89999999999998 554444 459999999764321 122 111111 13444433 59999
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHH--hcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccC
Q psy7780 143 DEIDAVGTKRYDSNSGGEREIQRTMLELLNQ--LDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIR 220 (317)
Q Consensus 143 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~--ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~r 220 (317)
|||..+-. ++|.-|...|.+ +..+.++ ...+-+|-||++||+. |...+-
T Consensus 242 DEI~~mpl-----------~~Q~kLLRvLqe~~~~rvG~~---------------~~i~vdvRiIaaT~~d--L~~~v~- 292 (464)
T COG2204 242 DEIGEMPL-----------ELQVKLLRVLQEREFERVGGN---------------KPIKVDVRIIAATNRD--LEEEVA- 292 (464)
T ss_pred eccccCCH-----------HHHHHHHHHHHcCeeEecCCC---------------cccceeeEEEeecCcC--HHHHHH-
Confidence 99987732 244445555543 1111111 0111468899999972 222222
Q ss_pred CCcce-------eEEEeCCCCH----HHHHHHHHHHhcCC----CC-CcCCCHHHHHHhC-CCC--CHHHHHHHHHHHHH
Q psy7780 221 PGRID-------RKIEFPLPDE----KTKRRIFNIHTSRM----TL-AEDVNLQELIMAK-DDL--SGADIKAICTEAGL 281 (317)
Q Consensus 221 pgRf~-------~~I~~~~P~~----~~r~~Il~~~l~~~----~~-~~~~~~~~ia~~t-~g~--s~~dl~~l~~~A~~ 281 (317)
-|||. .++.+..|.. ++.-.+++.++++. +. ....+-+.+...+ ..+ +-++|+|++++++.
T Consensus 293 ~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~i 372 (464)
T COG2204 293 AGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVI 372 (464)
T ss_pred cCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHh
Confidence 23332 2444444543 44444666666542 11 2344445554442 333 46778888888776
Q ss_pred HH
Q psy7780 282 MA 283 (317)
Q Consensus 282 ~a 283 (317)
.+
T Consensus 373 l~ 374 (464)
T COG2204 373 LS 374 (464)
T ss_pred cC
Confidence 54
No 224
>PRK06921 hypothetical protein; Provisional
Probab=98.02 E-value=9.3e-06 Score=74.11 Aligned_cols=64 Identities=20% Similarity=0.173 Sum_probs=41.7
Q ss_pred hhHHHhhhcCCCchh---hhhhcC----CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeeccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT----SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDA 147 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~----~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~ 147 (317)
.+.+|+|+||+|||+ |+|+++ +..+++++..+++...... .....+.++.. ....+|+|||++.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~-~~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDD-FDLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHH-HHHHHHHHHHh--cCCCEEEEecccc
Confidence 468899999999998 777765 6778888887766542111 11122222222 2347999999943
No 225
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.02 E-value=9e-06 Score=76.34 Aligned_cols=67 Identities=16% Similarity=0.285 Sum_probs=45.5
Q ss_pred hhHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcC---CchHHHHHHHHHHHhhCCceEeeccccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLG---DGPKLVRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g---~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
...+|+|+||||||+ |+|+++ |..+++++..+++..... +........++.... ..+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~--~DLLIIDDlG~e~ 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLIN--CDLLIIDDLGTEK 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhcc--CCEEEEeccCCCC
Confidence 468899999999998 888876 778999999888765421 111111222333332 3799999997653
No 226
>PRK06526 transposase; Provisional
Probab=98.01 E-value=4.3e-06 Score=75.78 Aligned_cols=73 Identities=8% Similarity=0.116 Sum_probs=45.1
Q ss_pred eEeechhhHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhhhcCC-chHHHHHHHHHHHhhCCceEeeccccc
Q psy7780 75 TFLRVVGSELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQKYLGD-GPKLVRELFRVAEEHAPSIVFIDEIDA 147 (317)
Q Consensus 75 ~~~~i~g~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~~~g~-~~~~l~~~f~~a~~~~P~Ii~iDEiD~ 147 (317)
.|-+-+...+|+||||||||+ +++.+ .|..+..++.++++...... ....+...+... ..+.+|+|||++.
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~ 170 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGY 170 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEccccc
Confidence 344433467899999999998 55554 36777777777776643211 111222222222 2357999999987
Q ss_pred cc
Q psy7780 148 VG 149 (317)
Q Consensus 148 l~ 149 (317)
+.
T Consensus 171 ~~ 172 (254)
T PRK06526 171 IP 172 (254)
T ss_pred CC
Confidence 64
No 227
>PRK15115 response regulator GlrR; Provisional
Probab=97.99 E-value=9.7e-06 Score=79.15 Aligned_cols=176 Identities=21% Similarity=0.265 Sum_probs=91.9
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhhhcCCchHHHHHHHHHH---------------HhhCCceE
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQKYLGDGPKLVRELFRVA---------------EEHAPSIV 140 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a---------------~~~~P~Ii 140 (317)
++++.|.+|||||+ ++.+. .+.+|+.++|..+-.... -..+|..+ .......|
T Consensus 159 ~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl 232 (444)
T PRK15115 159 SVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL------ESELFGHARGAFTGAVSNREGLFQAAEGGTL 232 (444)
T ss_pred eEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH------HHHhcCCCcCCCCCCccCCCCcEEECCCCEE
Confidence 67899999999998 33333 457999999987532111 11122111 11224689
Q ss_pred eecccccccccccCCCCCchhHHHHHHHHHHHHhc--CCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccc
Q psy7780 141 FIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLD--GFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPAL 218 (317)
Q Consensus 141 ~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld--~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al 218 (317)
||||+|.+... .+..+..+++.-. ...+. .....++.+|+||+.. ++..+
T Consensus 233 ~l~~i~~l~~~-----------~q~~L~~~l~~~~~~~~g~~---------------~~~~~~~rii~~~~~~--l~~~~ 284 (444)
T PRK15115 233 FLDEIGDMPAP-----------LQVKLLRVLQERKVRPLGSN---------------RDIDIDVRIISATHRD--LPKAM 284 (444)
T ss_pred EEEccccCCHH-----------HHHHHHHHHhhCCEEeCCCC---------------ceeeeeEEEEEeCCCC--HHHHH
Confidence 99999998543 3455555554311 11000 0001368899999863 43333
Q ss_pred cCCCcc---------eeEEEeCCCCHHHHH----HHHHHHhcCC----CCC----cCCCHHHHHHhCCCCCHHHHHHHHH
Q psy7780 219 IRPGRI---------DRKIEFPLPDEKTKR----RIFNIHTSRM----TLA----EDVNLQELIMAKDDLSGADIKAICT 277 (317)
Q Consensus 219 ~rpgRf---------~~~I~~~~P~~~~r~----~Il~~~l~~~----~~~----~~~~~~~ia~~t~g~s~~dl~~l~~ 277 (317)
.+ |+| ...|.+|+ -.+|. .+++.++++. ... +...+..+....=--+.++|+++++
T Consensus 285 ~~-~~f~~~l~~~l~~~~i~lPp--Lr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~ 361 (444)
T PRK15115 285 AR-GEFREDLYYRLNVVSLKIPA--LAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIE 361 (444)
T ss_pred Hc-CCccHHHHHhhceeeecCCC--hHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHH
Confidence 22 444 23444444 44443 3555555432 111 1122333433331226778888888
Q ss_pred HHHHHHHHhcCCCcCHHHHH
Q psy7780 278 EAGLMALRERRMKVTNEDFK 297 (317)
Q Consensus 278 ~A~~~a~~~~~~~it~~d~~ 297 (317)
+|+..+ ....|+.+++.
T Consensus 362 ~~~~~~---~~~~i~~~~l~ 378 (444)
T PRK15115 362 QCVALT---SSPVISDALVE 378 (444)
T ss_pred HHHHhC---CCCccChhhhh
Confidence 876542 23345555553
No 228
>PF05729 NACHT: NACHT domain
Probab=97.99 E-value=5.7e-05 Score=62.75 Aligned_cols=86 Identities=17% Similarity=0.264 Sum_probs=49.8
Q ss_pred HhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC
Q psy7780 133 EEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE 212 (317)
Q Consensus 133 ~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~ 212 (317)
....+.+|+||.+|.+...... .........+.+++.. . . +.++.+|.|+....
T Consensus 78 ~~~~~~llilDglDE~~~~~~~---~~~~~~~~~l~~l~~~-~-~---------------------~~~~~liit~r~~~ 131 (166)
T PF05729_consen 78 EKNKRVLLILDGLDELEEQDQS---QERQRLLDLLSQLLPQ-A-L---------------------PPGVKLIITSRPRA 131 (166)
T ss_pred HcCCceEEEEechHhcccchhh---hHHHHHHHHHHHHhhh-c-c---------------------CCCCeEEEEEcCCh
Confidence 3455678999999999764311 1122233344444433 0 1 13445555554322
Q ss_pred C--CCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcC
Q psy7780 213 T--LDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSR 248 (317)
Q Consensus 213 ~--Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~ 248 (317)
. +...+.. ...+.++..+.+++.++++.++++
T Consensus 132 ~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 132 FPDLRRRLKQ----AQILELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHhcCC----CcEEEECCCCHHHHHHHHHHHhhc
Confidence 2 3333332 147899999999999999998864
No 229
>KOG1968|consensus
Probab=97.95 E-value=2.1e-05 Score=81.97 Aligned_cols=159 Identities=15% Similarity=0.182 Sum_probs=100.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhc-----CC--chHHHHHHH---HHHHh-hCC-ceEeeccccc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYL-----GD--GPKLVRELF---RVAEE-HAP-SIVFIDEIDA 147 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~-----g~--~~~~l~~~f---~~a~~-~~P-~Ii~iDEiD~ 147 (317)
.|+.||||+|||+ ++|.++|..++..++++..+++. |+ +...|..-| ..... ..+ -||++||+|.
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~ 439 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDG 439 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEecccc
Confidence 5999999999999 99999999999999987765432 22 122333334 00000 012 3899999998
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeE
Q psy7780 148 VGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRK 227 (317)
Q Consensus 148 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~ 227 (317)
.... .+.....+.+++.. ..+-+|+++|........-+. |-...
T Consensus 440 ~~~~--------dRg~v~~l~~l~~k--------------------------s~~Piv~~cndr~~p~sr~~~--~~~~~ 483 (871)
T KOG1968|consen 440 MFGE--------DRGGVSKLSSLCKK--------------------------SSRPLVCTCNDRNLPKSRALS--RACSD 483 (871)
T ss_pred ccch--------hhhhHHHHHHHHHh--------------------------ccCCeEEEecCCCCccccchh--hhcce
Confidence 8651 11112333344432 234488999887766653333 33357
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCC-CcCCCHHHHHHhCCCCCHHHHHHHHHHHHH
Q psy7780 228 IEFPLPDEKTKRRIFNIHTSRMTL-AEDVNLQELIMAKDDLSGADIKAICTEAGL 281 (317)
Q Consensus 228 I~~~~P~~~~r~~Il~~~l~~~~~-~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~ 281 (317)
++|+.|+.+.+..-+...+....+ -.+..++++.+.+ ++||++++..-.+
T Consensus 484 l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~~i~~lq~ 534 (871)
T KOG1968|consen 484 LRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQIIMQLQF 534 (871)
T ss_pred eeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHHHHHHHhh
Confidence 999999998887766655443222 2344577777764 7788877765443
No 230
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.92 E-value=5.3e-06 Score=72.02 Aligned_cols=68 Identities=16% Similarity=0.153 Sum_probs=40.1
Q ss_pred CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCC
Q psy7780 136 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215 (317)
Q Consensus 136 ~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld 215 (317)
..++|+|||+..+++.|..... .....+ +++.+.-. .+.-+|.+|.++..||
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~----~~~~~~-~~l~~hRh-----------------------~g~diiliTQ~~~~id 130 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGK----KVPEII-EFLAQHRH-----------------------YGWDIILITQSPSQID 130 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T--------HHH-HGGGGCCC-----------------------TT-EEEEEES-GGGB-
T ss_pred CCcEEEEECChhhcCCCccccc----cchHHH-HHHHHhCc-----------------------CCcEEEEEeCCHHHHh
Confidence 4589999999999998843211 112223 44433222 3455999999999999
Q ss_pred ccccCCCcceeEEEeCCC
Q psy7780 216 PALIRPGRIDRKIEFPLP 233 (317)
Q Consensus 216 ~al~rpgRf~~~I~~~~P 233 (317)
+.+++ +.+..+++..+
T Consensus 131 ~~ir~--lve~~~~~~k~ 146 (193)
T PF05707_consen 131 KFIRD--LVEYHYHCRKL 146 (193)
T ss_dssp HHHHC--CEEEEEEEEE-
T ss_pred HHHHH--HHheEEEEEee
Confidence 99988 88888877654
No 231
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.92 E-value=5.5e-05 Score=75.14 Aligned_cols=167 Identities=13% Similarity=0.207 Sum_probs=90.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEe-chhhh------hhhcCCch------H---HHHHH-HHHHHh-------
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVV-GSELI------QKYLGDGP------K---LVREL-FRVAEE------- 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~-~s~l~------~~~~g~~~------~---~l~~~-f~~a~~------- 134 (317)
..|++||||||||+ ++|++++..+.+-. ...+. ..|.+... . ...++ +..++.
T Consensus 47 iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g 126 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSG 126 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccccccccccccccccccchhhhhccccccccccccccccC
Confidence 36789999999999 99999998877643 22211 11111111 1 11111 111121
Q ss_pred ----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCC-CeEEEEE-c
Q psy7780 135 ----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPG-DVKVIMA-T 208 (317)
Q Consensus 135 ----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~-~v~vI~t-T 208 (317)
..+.||+|||+=.++... ......+|.+++.. +. . ++++|.+ +
T Consensus 127 ~~~~~~~kvILVEDlPN~~~~~-------~~~f~~~L~~~l~~-----~~-------------------~~PlV~iiSe~ 175 (519)
T PF03215_consen 127 SNSSSNKKVILVEDLPNVFHRD-------TSRFREALRQYLRS-----SR-------------------CLPLVFIISET 175 (519)
T ss_pred CCcCCCceEEEeeccccccchh-------HHHHHHHHHHHHHc-----CC-------------------CCCEEEEEecc
Confidence 236799999987654332 13445555555543 11 2 5666666 1
Q ss_pred ------CCCC--------CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC--------CCCcCCC-HHHHHHhCC
Q psy7780 209 ------NRIE--------TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM--------TLAEDVN-LQELIMAKD 265 (317)
Q Consensus 209 ------N~~~--------~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~--------~~~~~~~-~~~ia~~t~ 265 (317)
|... .+++.++.-.++ ..|.|.+-....-++-|+..+... ....... ++.|+..+
T Consensus 176 ~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s- 253 (519)
T PF03215_consen 176 ESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQSVLDSIAESS- 253 (519)
T ss_pred cccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhc-
Confidence 1111 467777654445 478888776655555554443321 1111122 56777664
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q psy7780 266 DLSGADIKAICTEAGLMAL 284 (317)
Q Consensus 266 g~s~~dl~~l~~~A~~~a~ 284 (317)
.+||+..++.--+.+.
T Consensus 254 ---~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 254 ---NGDIRSAINNLQFWCL 269 (519)
T ss_pred ---CchHHHHHHHHHHHhc
Confidence 4599988876555554
No 232
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.92 E-value=5.6e-06 Score=67.81 Aligned_cols=67 Identities=27% Similarity=0.435 Sum_probs=44.8
Q ss_pred hHHHhhhcCCCchh---hhhhcCC---ceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS---ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~---~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~ 155 (317)
|++++|.|||||++ ++....+ .+|+.++|..+- .++++.+ .+..|+|+|+|.+-..
T Consensus 23 pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~~~---- 84 (138)
T PF14532_consen 23 PVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLSPE---- 84 (138)
T ss_dssp -EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS-HH----
T ss_pred cEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCCHH----
Confidence 88999999999999 4444433 467777776532 3455554 5579999999998433
Q ss_pred CCCchhHHHHHHHHHHHH
Q psy7780 156 NSGGEREIQRTMLELLNQ 173 (317)
Q Consensus 156 ~~~~~~~~~~~l~~ll~~ 173 (317)
.+..+..++..
T Consensus 85 -------~Q~~L~~~l~~ 95 (138)
T PF14532_consen 85 -------AQRRLLDLLKR 95 (138)
T ss_dssp -------HHHHHHHHHHH
T ss_pred -------HHHHHHHHHHh
Confidence 46666677766
No 233
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.89 E-value=1.5e-05 Score=74.24 Aligned_cols=65 Identities=18% Similarity=0.251 Sum_probs=44.0
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCC-chHHHHHHHHHHHhhCCceEeecccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGD-GPKLVRELFRVAEEHAPSIVFIDEIDAV 148 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~-~~~~l~~~f~~a~~~~P~Ii~iDEiD~l 148 (317)
+.+|+|+||||||. |+|+++ |..+..+..++++...... ....+.+.++..+ ...+|+|||+.+-
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 67899999999999 888887 7778888888776543211 0112334444433 3479999999764
No 234
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.87 E-value=6.8e-05 Score=73.24 Aligned_cols=173 Identities=19% Similarity=0.220 Sum_probs=90.0
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhhh-----cCCch-------HHHHHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQKY-----LGDGP-------KLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~~-----~g~~~-------~~l~~~f~~a~~~~P~Ii~iD 143 (317)
++++.|.+||||++ ++... .+.+|+.++|+.+-... .|... ......|+. ....+||||
T Consensus 164 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~l~ 240 (445)
T TIGR02915 164 TVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEY---AHGGTLFLD 240 (445)
T ss_pred CEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeE---CCCCEEEEe
Confidence 78899999999998 44333 34689999998753221 11100 000001221 224699999
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-------CCCCc
Q psy7780 144 EIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-------ETLDP 216 (317)
Q Consensus 144 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-------~~Ld~ 216 (317)
|+|.+... .+..+..+++.-. +.... .....+.++.+|+||+.. ..+.+
T Consensus 241 ~i~~l~~~-----------~q~~l~~~l~~~~-~~~~~------------~~~~~~~~~rii~~~~~~l~~~~~~~~~~~ 296 (445)
T TIGR02915 241 EIGDLPLN-----------LQAKLLRFLQERV-IERLG------------GREEIPVDVRIVCATNQDLKRMIAEGTFRE 296 (445)
T ss_pred chhhCCHH-----------HHHHHHHHHhhCe-EEeCC------------CCceeeeceEEEEecCCCHHHHHHcCCccH
Confidence 99998532 3555555654311 10000 000112467899999874 23444
Q ss_pred cccCCCcce-eEEEeCCCC--HHHHHHHHHHHhcCC----CCC-cCCC---HHHHHHhCCCCCHHHHHHHHHHHHHHH
Q psy7780 217 ALIRPGRID-RKIEFPLPD--EKTKRRIFNIHTSRM----TLA-EDVN---LQELIMAKDDLSGADIKAICTEAGLMA 283 (317)
Q Consensus 217 al~rpgRf~-~~I~~~~P~--~~~r~~Il~~~l~~~----~~~-~~~~---~~~ia~~t~g~s~~dl~~l~~~A~~~a 283 (317)
.|.. |+. ..|++|+.. .++...+++.++.+. +.. ...+ +..+....=--+-++|++++++|+..+
T Consensus 297 ~L~~--~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 297 DLFY--RIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred HHHH--HhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 4544 553 445555542 133334555555432 111 1222 233333221225788999999887543
No 235
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.84 E-value=1.8e-05 Score=77.67 Aligned_cols=188 Identities=17% Similarity=0.211 Sum_probs=103.0
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhhh-----cCCchH----HHHHHHHHHHhhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQKY-----LGDGPK----LVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~~-----~g~~~~----~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
++++.|.+||||++ ++... .+.+|+.++|..+-..+ .|.... ................|||||+|
T Consensus 159 ~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~ 238 (463)
T TIGR01818 159 TVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIG 238 (463)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchh
Confidence 67899999999999 44333 35699999997753221 121100 00000000112235789999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcC--CCcccccccchhhhcccccccCCCCeEEEEEcCCCC-------CCCcc
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDG--FDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-------TLDPA 217 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~--~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-------~Ld~a 217 (317)
.+... .+..|..++..-.. ..+. .....++.+|++|+..- .+.+.
T Consensus 239 ~l~~~-----------~q~~ll~~l~~~~~~~~~~~---------------~~~~~~~rii~~~~~~l~~~~~~~~f~~~ 292 (463)
T TIGR01818 239 DMPLD-----------AQTRLLRVLADGEFYRVGGR---------------TPIKVDVRIVAATHQNLEALVRQGKFRED 292 (463)
T ss_pred hCCHH-----------HHHHHHHHHhcCcEEECCCC---------------ceeeeeeEEEEeCCCCHHHHHHcCCcHHH
Confidence 88432 35555556543110 0000 00113577899987642 34445
Q ss_pred ccCCCcce-eEEEeCCCC--HHHHHHHHHHHhcCCCC----C-cCCCHHHHHHh-CCCC--CHHHHHHHHHHHHHHHHHh
Q psy7780 218 LIRPGRID-RKIEFPLPD--EKTKRRIFNIHTSRMTL----A-EDVNLQELIMA-KDDL--SGADIKAICTEAGLMALRE 286 (317)
Q Consensus 218 l~rpgRf~-~~I~~~~P~--~~~r~~Il~~~l~~~~~----~-~~~~~~~ia~~-t~g~--s~~dl~~l~~~A~~~a~~~ 286 (317)
|.. |+. ..|++|+.. .++...+++.++.+... . ...+-+.+... ..++ +-++|++++++|+..+
T Consensus 293 L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~--- 367 (463)
T TIGR01818 293 LFH--RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMA--- 367 (463)
T ss_pred HHH--HhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---
Confidence 555 554 477777765 56777777776654311 1 12222222222 1233 4588888888877654
Q ss_pred cCCCcCHHHHHHHH
Q psy7780 287 RRMKVTNEDFKKSK 300 (317)
Q Consensus 287 ~~~~it~~d~~~al 300 (317)
....|+.+|+...+
T Consensus 368 ~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 368 SGDEVLVSDLPAEL 381 (463)
T ss_pred CCCcccHHhchHHH
Confidence 23568888886554
No 236
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.84 E-value=1.2e-05 Score=68.97 Aligned_cols=64 Identities=17% Similarity=0.300 Sum_probs=42.2
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCC-chHHHHHHHHHHHhhCCceEeeccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGD-GPKLVRELFRVAEEHAPSIVFIDEIDA 147 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~-~~~~l~~~f~~a~~~~P~Ii~iDEiD~ 147 (317)
..+|+|+||||||. |+|+++ |..+..++.++|+...... ......+.++.... +.+|+|||+..
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~ 119 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGY 119 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTS
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEecccccce
Confidence 57899999999999 555544 7889999999988764321 11223344444433 47999999864
No 237
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.82 E-value=4.2e-05 Score=61.36 Aligned_cols=68 Identities=18% Similarity=0.132 Sum_probs=41.7
Q ss_pred hHHHhhhcCCCchh---hhhhcC--------CceEEEEechhhhh----------hh----cC-Cc-hHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQT--------SATFLRVVGSELIQ----------KY----LG-DG-PKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~--------~~~~~~v~~s~l~~----------~~----~g-~~-~~~l~~~f~~a~~ 134 (317)
..+++|+||+|||+ .++.+. +.+++.++++...+ .+ .+ .+ ......+.+....
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~ 85 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDR 85 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHh
Confidence 45689999999999 666655 77888888765331 10 11 12 2233334444444
Q ss_pred hCCceEeeccccccc
Q psy7780 135 HAPSIVFIDEIDAVG 149 (317)
Q Consensus 135 ~~P~Ii~iDEiD~l~ 149 (317)
....+|+|||+|.+.
T Consensus 86 ~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 86 RRVVLLVIDEADHLF 100 (131)
T ss_dssp CTEEEEEEETTHHHH
T ss_pred cCCeEEEEeChHhcC
Confidence 444599999999975
No 238
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.82 E-value=2.6e-05 Score=70.70 Aligned_cols=64 Identities=16% Similarity=0.167 Sum_probs=43.3
Q ss_pred hhhHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcC-----CchHHHHHHHHHHHhhCCceEeecccccc
Q psy7780 80 VGSELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLG-----DGPKLVRELFRVAEEHAPSIVFIDEIDAV 148 (317)
Q Consensus 80 ~g~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g-----~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l 148 (317)
+...+|+|+||+|||. |+|+++ |..++.+..++++..... ..+..+... . ....+|+|||+-..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~---l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE---L--KKVDLLIIDDIGYE 179 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH---h--hcCCEEEEecccCc
Confidence 3367899999999999 666665 788999999998875321 112222111 2 22369999998765
No 239
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.79 E-value=8.5e-05 Score=72.71 Aligned_cols=183 Identities=22% Similarity=0.284 Sum_probs=92.5
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhh-----hcCCchHH-------HHHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQK-----YLGDGPKL-------VRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~-----~~g~~~~~-------l~~~f~~a~~~~P~Ii~iD 143 (317)
+++++|++||||++ ++... .+.+|+.++|..+-.. .+|..... -...|..| ...+||||
T Consensus 168 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~gtl~ld 244 (457)
T PRK11361 168 SVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERA---NEGTLLLD 244 (457)
T ss_pred EEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEEC---CCCEEEEe
Confidence 78999999999999 44333 4569999999875322 11111000 00112222 23699999
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-------CCCc
Q psy7780 144 EIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-------TLDP 216 (317)
Q Consensus 144 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-------~Ld~ 216 (317)
|+|.+... .+..+..++..-. +..... ....+.++.+|+|||..- .+.+
T Consensus 245 ~i~~l~~~-----------~q~~L~~~l~~~~-~~~~~~------------~~~~~~~~rii~~t~~~l~~~~~~g~~~~ 300 (457)
T PRK11361 245 EIGEMPLV-----------LQAKLLRILQERE-FERIGG------------HQTIKVDIRIIAATNRDLQAMVKEGTFRE 300 (457)
T ss_pred chhhCCHH-----------HHHHHHHHHhcCc-EEeCCC------------CceeeeceEEEEeCCCCHHHHHHcCCchH
Confidence 99998533 3455555554311 110000 001124688999998642 2333
Q ss_pred cccCCCcceeEEEeCCCCHHHH----HHHHHHHhcCCCC----C-cCCCHHH---HHHhCCCCCHHHHHHHHHHHHHHHH
Q psy7780 217 ALIRPGRIDRKIEFPLPDEKTK----RRIFNIHTSRMTL----A-EDVNLQE---LIMAKDDLSGADIKAICTEAGLMAL 284 (317)
Q Consensus 217 al~rpgRf~~~I~~~~P~~~~r----~~Il~~~l~~~~~----~-~~~~~~~---ia~~t~g~s~~dl~~l~~~A~~~a~ 284 (317)
.+.. |+. .+.+..|...+| ..++..++.+... . ...+.+. +....=--+-++|++++++|...+
T Consensus 301 ~l~~--~l~-~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~- 376 (457)
T PRK11361 301 DLFY--RLN-VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN- 376 (457)
T ss_pred HHHH--Hhc-cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC-
Confidence 4443 442 244444444444 3355555443211 1 1222222 222221126788888888876543
Q ss_pred HhcCCCcCHHHHH
Q psy7780 285 RERRMKVTNEDFK 297 (317)
Q Consensus 285 ~~~~~~it~~d~~ 297 (317)
....|+.+|+.
T Consensus 377 --~~~~i~~~~l~ 387 (457)
T PRK11361 377 --SGPIIFSEDLP 387 (457)
T ss_pred --CCCcccHHHCh
Confidence 23345555554
No 240
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.77 E-value=1.5e-05 Score=75.02 Aligned_cols=194 Identities=18% Similarity=0.172 Sum_probs=99.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechh-----hhh-----hhcCCchHHHH-HHHHHHHhhCCceEeeccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSE-----LIQ-----KYLGDGPKLVR-ELFRVAEEHAPSIVFIDEIDA 147 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~-----l~~-----~~~g~~~~~l~-~~f~~a~~~~P~Ii~iDEiD~ 147 (317)
++|+.|.||||||. .+++-.. .-+++++.. |.. ...|+ ..++ -.+-.|. ..|++|||+|.
T Consensus 59 hiLlvGdpg~gKS~ll~~~~~~~p-r~v~~~g~~~s~~gLta~~~~d~~~~~--~~leaGalvlad---~GiccIDe~dk 132 (331)
T PF00493_consen 59 HILLVGDPGTGKSQLLKYVAKLAP-RSVYTSGKGSSAAGLTASVSRDPVTGE--WVLEAGALVLAD---GGICCIDEFDK 132 (331)
T ss_dssp -EEEECSCHHCHHHHHHCCCCT-S-SEEEEECCGSTCCCCCEEECCCGGTSS--ECEEE-HHHHCT---TSEEEECTTTT
T ss_pred ceeeccchhhhHHHHHHHHHhhCC-ceEEECCCCcccCCccceeccccccce--eEEeCCchhccc---Cceeeeccccc
Confidence 89999999999998 3333322 223333322 110 00111 0111 0122222 36999999998
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-------------CC
Q psy7780 148 VGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-------------TL 214 (317)
Q Consensus 148 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-------------~L 214 (317)
+-.. ....|.+.+++ ..-.. .+.+-...++.+.-|++++|... .+
T Consensus 133 ~~~~-----------~~~~l~eaMEq---q~isi--------~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l 190 (331)
T PF00493_consen 133 MKED-----------DRDALHEAMEQ---QTISI--------AKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINL 190 (331)
T ss_dssp --CH-----------HHHHHHHHHHC---SCEEE--------CTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S
T ss_pred ccch-----------HHHHHHHHHHc---Ceecc--------chhhhcccccchhhhHHHHhhhhhhcchhhhhHHhccc
Confidence 7431 13344444443 22111 11112244567788999999876 48
Q ss_pred CccccCCCcceeEEEe-CCCCHHHHHHHHHHHhcCCCCC---------c---CCC------HHHHHH-------------
Q psy7780 215 DPALIRPGRIDRKIEF-PLPDEKTKRRIFNIHTSRMTLA---------E---DVN------LQELIM------------- 262 (317)
Q Consensus 215 d~al~rpgRf~~~I~~-~~P~~~~r~~Il~~~l~~~~~~---------~---~~~------~~~ia~------------- 262 (317)
+++|++ |||..+.+ ..|+.+.-..|.+..++..... . ..+ +-..++
T Consensus 191 ~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~ 268 (331)
T PF00493_consen 191 PPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKE 268 (331)
T ss_dssp -CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHH
T ss_pred chhhHh--hcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHH
Confidence 899999 99977654 5667665555555444332110 0 000 011111
Q ss_pred -----------------hCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q psy7780 263 -----------------AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 263 -----------------~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~ 305 (317)
.....|.+.|..+++-|-..|.-+-+..|+.+|+..|++-+..
T Consensus 269 ~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~~~ 328 (331)
T PF00493_consen 269 LIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLFEE 328 (331)
T ss_dssp HHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHHHh
Confidence 0123677888889888888887777899999999999886543
No 241
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.75 E-value=5.8e-05 Score=74.23 Aligned_cols=186 Identities=19% Similarity=0.231 Sum_probs=101.1
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhh-----cCCchH-------HHHHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKY-----LGDGPK-------LVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~-----~g~~~~-------~l~~~f~~a~~~~P~Ii~iD 143 (317)
|+++.|.+|||||+ ++.+.. +.+|+.++|+.+-... .|.... .-...|+.| ....+|||
T Consensus 163 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a---~~Gtl~l~ 239 (469)
T PRK10923 163 SVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQA---DGGTLFLD 239 (469)
T ss_pred eEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeEC---CCCEEEEe
Confidence 88999999999999 444443 4699999998763211 111100 000012222 24589999
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-------CCCCc
Q psy7780 144 EIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-------ETLDP 216 (317)
Q Consensus 144 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-------~~Ld~ 216 (317)
|+|.+... .+..|..+++.-. +..... ......++.+|+||+.. ..+.+
T Consensus 240 ~i~~l~~~-----------~q~~L~~~l~~~~-~~~~~~------------~~~~~~~~rii~~~~~~l~~~~~~~~~~~ 295 (469)
T PRK10923 240 EIGDMPLD-----------VQTRLLRVLADGQ-FYRVGG------------YAPVKVDVRIIAATHQNLEQRVQEGKFRE 295 (469)
T ss_pred ccccCCHH-----------HHHHHHHHHhcCc-EEeCCC------------CCeEEeeEEEEEeCCCCHHHHHHcCCchH
Confidence 99998533 3455555554311 000000 00001357899999763 23556
Q ss_pred cccCCCcc-eeEEEeCCCC--HHHHHHHHHHHhcCCC----CC-cCCC---HHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q psy7780 217 ALIRPGRI-DRKIEFPLPD--EKTKRRIFNIHTSRMT----LA-EDVN---LQELIMAKDDLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 217 al~rpgRf-~~~I~~~~P~--~~~r~~Il~~~l~~~~----~~-~~~~---~~~ia~~t~g~s~~dl~~l~~~A~~~a~~ 285 (317)
.|.. || ...|++|+.. .++...+++.++++.. .. ...+ +..+....=--+-++|++++++|...+
T Consensus 296 ~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~-- 371 (469)
T PRK10923 296 DLFH--RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA-- 371 (469)
T ss_pred HHHH--HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC--
Confidence 6666 76 4667776653 3555667777665421 11 1122 222333221225788888888877654
Q ss_pred hcCCCcCHHHHHHH
Q psy7780 286 ERRMKVTNEDFKKS 299 (317)
Q Consensus 286 ~~~~~it~~d~~~a 299 (317)
....|+.+|+-..
T Consensus 372 -~~~~i~~~~l~~~ 384 (469)
T PRK10923 372 -AGQEVLIQDLPGE 384 (469)
T ss_pred -CCCcccHHHCcHh
Confidence 2446777777433
No 242
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.72 E-value=7e-05 Score=80.85 Aligned_cols=141 Identities=21% Similarity=0.195 Sum_probs=88.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechh---hhhhh----cCC--chHHHHH-HHHHHHhhCCceEeecccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSE---LIQKY----LGD--GPKLVRE-LFRVAEEHAPSIVFIDEIDAV 148 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~---l~~~~----~g~--~~~~l~~-~f~~a~~~~P~Ii~iDEiD~l 148 (317)
|+|+.|-||+|||+ |+|+++|-.+++|+.|+ |++-+ .++ ++-..++ =|-.|-+. .--|++||+...
T Consensus 1545 pilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~-G~WVlLDEiNLa 1623 (4600)
T COG5271 1545 PILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD-GGWVLLDEINLA 1623 (4600)
T ss_pred ceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc-CCEEEeehhhhh
Confidence 89999999999999 99999999999999875 33321 222 1111111 12223222 257899998643
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccc-ccCCCCeEEEEEcCCCCC------CCccccCC
Q psy7780 149 GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTL-IYLPGDVKVIMATNRIET------LDPALIRP 221 (317)
Q Consensus 149 ~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~-~~~~~~v~vI~tTN~~~~------Ld~al~rp 221 (317)
.|+++..+=..+|.-... ++-++.+ +..-.++.|++|-|..+. ||..++.
T Consensus 1624 --------------SQSVlEGLNacLDhR~ea--------yIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n- 1680 (4600)
T COG5271 1624 --------------SQSVLEGLNACLDHRREA--------YIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN- 1680 (4600)
T ss_pred --------------HHHHHHHHHHHHhhcccc--------ccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh-
Confidence 134444444444432211 1111211 333367888888887654 9999999
Q ss_pred CcceeEEEeCCCCHHHHHHHHHHHhcC
Q psy7780 222 GRIDRKIEFPLPDEKTKRRIFNIHTSR 248 (317)
Q Consensus 222 gRf~~~I~~~~P~~~~r~~Il~~~l~~ 248 (317)
||. ++++...+.+....|......+
T Consensus 1681 -RFs-vV~~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1681 -RFS-VVKMDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred -hhh-eEEecccccchHHHHHHhhCCc
Confidence 996 7888888777777777666543
No 243
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.70 E-value=0.00087 Score=60.00 Aligned_cols=183 Identities=17% Similarity=0.140 Sum_probs=110.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCC---ceEEEEechh-----hhhhh----cCCc--------hHHHHHHHHHHHh-hCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS---ATFLRVVGSE-----LIQKY----LGDG--------PKLVRELFRVAEE-HAP 137 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~---~~~~~v~~s~-----l~~~~----~g~~--------~~~l~~~f~~a~~-~~P 137 (317)
-..+.|.-|+|||. |++..++ .-.+.++... +..-+ .+.. ++.-+.+.+..++ ..|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 34578999999999 4444443 2334444322 22211 1111 2222333333333 346
Q ss_pred ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC-CCCCC-
Q psy7780 138 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR-IETLD- 215 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~-~~~Ld- 215 (317)
-++++||++.+.... ...+.-|.+.-++..+. -.+++|+-..- +..--
T Consensus 133 v~l~vdEah~L~~~~-----------le~Lrll~nl~~~~~~~-------------------l~ivL~Gqp~L~~~lr~~ 182 (269)
T COG3267 133 VVLMVDEAHDLNDSA-----------LEALRLLTNLEEDSSKL-------------------LSIVLIGQPKLRPRLRLP 182 (269)
T ss_pred eEEeehhHhhhChhH-----------HHHHHHHHhhcccccCc-------------------eeeeecCCcccchhhchH
Confidence 899999999885432 12222222222222111 34666665421 11111
Q ss_pred --ccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCC----CcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 216 --PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTL----AEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 216 --~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~----~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
..+.. |++.+|++++.+.++-...++.+++.... -++..+..+...+.| .|+-+.++|..|...|...+..
T Consensus 183 ~l~e~~~--R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~ 259 (269)
T COG3267 183 VLRELEQ--RIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGED 259 (269)
T ss_pred HHHhhhh--eEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCC
Confidence 13446 88888999999999888899888876533 244456777778888 7999999999999999999999
Q ss_pred CcCHHHHH
Q psy7780 290 KVTNEDFK 297 (317)
Q Consensus 290 ~it~~d~~ 297 (317)
.|+...+.
T Consensus 260 ~v~~a~~~ 267 (269)
T COG3267 260 GVSEAEIK 267 (269)
T ss_pred ccchhhcc
Confidence 88877654
No 244
>KOG1942|consensus
Probab=97.66 E-value=0.00042 Score=63.18 Aligned_cols=104 Identities=27% Similarity=0.266 Sum_probs=76.2
Q ss_pred eEEEEEcCC-------------CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCC
Q psy7780 202 VKVIMATNR-------------IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDL 267 (317)
Q Consensus 202 v~vI~tTN~-------------~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~ 267 (317)
-+||++||| |..+|+.|+. |+- .|..-+++.++.++|++...+...+. .+..+..++.....-
T Consensus 326 PivifAsNrG~~~irGt~d~~sPhGip~dllD--Rl~-Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~t 402 (456)
T KOG1942|consen 326 PIVIFASNRGMCTIRGTEDILSPHGIPPDLLD--RLL-IIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTST 402 (456)
T ss_pred ceEEEecCCcceeecCCcCCCCCCCCCHHHhh--hee-EEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccch
Confidence 457777776 4558889998 884 66666778888889998886654444 333456666665556
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhc
Q psy7780 268 SGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKK 308 (317)
Q Consensus 268 s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~ 308 (317)
|-+-..+++.-|...|-..++..|+.+|++++-+-.+..++
T Consensus 403 sLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf~Dak~ 443 (456)
T KOG1942|consen 403 SLRYAVQLLTPASILAKTNGRKEISVEDVEEVTELFLDAKR 443 (456)
T ss_pred hHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHHHhchh
Confidence 67777788888888998899999999999998776654443
No 245
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.65 E-value=3.6e-05 Score=74.46 Aligned_cols=169 Identities=22% Similarity=0.342 Sum_probs=89.6
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhh-----hcCC----chHHH---HHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQK-----YLGD----GPKLV---RELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~-----~~g~----~~~~l---~~~f~~a~~~~P~Ii~iD 143 (317)
++|+.|-.||||-. +|-+.. +.+|+.+||+.+-.. .+|. ....+ +--|+.|. ..-+|+|
T Consensus 248 tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElAd---GGTLFLD 324 (550)
T COG3604 248 TVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELAD---GGTLFLD 324 (550)
T ss_pred eEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcccccccccchhccCcceeecC---CCeEech
Confidence 78999999999999 555444 569999999765322 1111 10000 01133332 3589999
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHH--hcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCC
Q psy7780 144 EIDAVGTKRYDSNSGGEREIQRTMLELLNQ--LDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRP 221 (317)
Q Consensus 144 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~--ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rp 221 (317)
||..+-.. +|.-|...|.+ +..+-+. +.. .-+|-||+|||+ +|-.+++.
T Consensus 325 EIGelPL~-----------lQaKLLRvLQegEieRvG~~----r~i-----------kVDVRiIAATNR--DL~~~V~~- 375 (550)
T COG3604 325 EIGELPLA-----------LQAKLLRVLQEGEIERVGGD----RTI-----------KVDVRVIAATNR--DLEEMVRD- 375 (550)
T ss_pred hhccCCHH-----------HHHHHHHHHhhcceeecCCC----cee-----------EEEEEEEeccch--hHHHHHHc-
Confidence 99877322 33434434332 2222221 110 136899999998 44444443
Q ss_pred Cccee-------E--EEeCCCC--HHHHHHHHHHHhcCC----CCC-cCCC---HHHHHHhC-CCCCHHHHHHHHHHHHH
Q psy7780 222 GRIDR-------K--IEFPLPD--EKTKRRIFNIHTSRM----TLA-EDVN---LQELIMAK-DDLSGADIKAICTEAGL 281 (317)
Q Consensus 222 gRf~~-------~--I~~~~P~--~~~r~~Il~~~l~~~----~~~-~~~~---~~~ia~~t-~g~s~~dl~~l~~~A~~ 281 (317)
|+|.. + |++|+.- .+..--+.+.+++++ +.. -..+ ++.+.+.. .| +-+++++++++|+.
T Consensus 376 G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPG-NVRELen~veRavl 454 (550)
T COG3604 376 GEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPG-NVRELENVVERAVL 454 (550)
T ss_pred CcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCC-cHHHHHHHHHHHHH
Confidence 56531 1 3333331 123333344444432 221 1112 23333322 23 67999999999999
Q ss_pred HH
Q psy7780 282 MA 283 (317)
Q Consensus 282 ~a 283 (317)
.|
T Consensus 455 la 456 (550)
T COG3604 455 LA 456 (550)
T ss_pred Hh
Confidence 87
No 246
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.60 E-value=0.00024 Score=69.19 Aligned_cols=186 Identities=17% Similarity=0.196 Sum_probs=90.2
Q ss_pred hHHHhhhcCCCchh---hhh---hcCCceEEEEechhhhhhh-----cCCchHHH----HHHHHHHHhhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVA---NQTSATFLRVVGSELIQKY-----LGDGPKLV----RELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA---~~~~~~~~~v~~s~l~~~~-----~g~~~~~l----~~~f~~a~~~~P~Ii~iDEiD 146 (317)
+++++|.+||||++ ++. ...+.+|+.++|+.+.... .|...... ...........+.+|||||+|
T Consensus 164 ~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~ 243 (441)
T PRK10365 164 TVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIG 243 (441)
T ss_pred eEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccc
Confidence 67889999999998 333 2345799999998653221 11110000 000000112235799999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcce-
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRID- 225 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~- 225 (317)
.+... .+..+..++..-. +... + .....+.++.+|+||+..- .....+|+|.
T Consensus 244 ~l~~~-----------~q~~l~~~l~~~~-~~~~-~-----------~~~~~~~~~rii~~t~~~~---~~~~~~~~~~~ 296 (441)
T PRK10365 244 DISPM-----------MQVRLLRAIQERE-VQRV-G-----------SNQTISVDVRLIAATHRDL---AAEVNAGRFRQ 296 (441)
T ss_pred cCCHH-----------HHHHHHHHHccCc-EEeC-C-----------CCceeeeceEEEEeCCCCH---HHHHHcCCchH
Confidence 98543 2344444443311 0000 0 0000113577888887632 1223344552
Q ss_pred --------eEEEeCCCC--HHHHHHHHHHHhcCCC----CC-cCCCH---HHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy7780 226 --------RKIEFPLPD--EKTKRRIFNIHTSRMT----LA-EDVNL---QELIMAKDDLSGADIKAICTEAGLMALRER 287 (317)
Q Consensus 226 --------~~I~~~~P~--~~~r~~Il~~~l~~~~----~~-~~~~~---~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~ 287 (317)
..|.+|+.. .++...+++.++.+.. .. ...+. ..+....=--+-++|+++++.|+..+ .
T Consensus 297 ~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~---~ 373 (441)
T PRK10365 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLL---T 373 (441)
T ss_pred HHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhC---C
Confidence 345555442 2344456666654321 11 11222 22332221125677888888776542 2
Q ss_pred CCCcCHHHHH
Q psy7780 288 RMKVTNEDFK 297 (317)
Q Consensus 288 ~~~it~~d~~ 297 (317)
...|+.+|+.
T Consensus 374 ~~~i~~~~l~ 383 (441)
T PRK10365 374 GEYISERELP 383 (441)
T ss_pred CCccchHhCc
Confidence 2345555553
No 247
>KOG1051|consensus
Probab=97.54 E-value=0.00013 Score=75.76 Aligned_cols=103 Identities=24% Similarity=0.279 Sum_probs=66.8
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhh---------hhcCCchHHHHHHHHHHHhhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQ---------KYLGDGPKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~---------~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
..+|.||.|+|||- |+|..+ .-.|++++++++.. .|+|..+ ...+.+..++..-|||||||||
T Consensus 593 wflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~--gg~LteavrrrP~sVVLfdeIE 670 (898)
T KOG1051|consen 593 WFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEE--GGQLTEAVKRRPYSVVLFEEIE 670 (898)
T ss_pred EEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchh--HHHHHHHHhcCCceEEEEechh
Confidence 46899999999998 777776 34799999986332 2555543 3356666666666999999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
.-. ..++..|.++++.-.--++. +..+ .-++++||+|+|.
T Consensus 671 kAh-----------~~v~n~llq~lD~GrltDs~--Gr~V-----------d~kN~I~IMTsn~ 710 (898)
T KOG1051|consen 671 KAH-----------PDVLNILLQLLDRGRLTDSH--GREV-----------DFKNAIFIMTSNV 710 (898)
T ss_pred hcC-----------HHHHHHHHHHHhcCccccCC--CcEe-----------eccceEEEEeccc
Confidence 653 33455666665531111111 1111 1178999999876
No 248
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.54 E-value=0.00012 Score=64.05 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=42.3
Q ss_pred hHHHhhhcCCCchh---hhhh---cCCceEEEEechhh-----hh---hh----cC-----------CchHHHHHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVAN---QTSATFLRVVGSEL-----IQ---KY----LG-----------DGPKLVRELFRVA 132 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~---~~~~~~~~v~~s~l-----~~---~~----~g-----------~~~~~l~~~f~~a 132 (317)
..+++|+||+|||+ .+|. ..+...++++..++ .. .+ .+ +....+..+.+.+
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~ 93 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTSKFI 93 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHHHHHH
Confidence 35789999999998 2221 33566777776431 11 00 00 0112244555556
Q ss_pred HhhCCceEeecccccccc
Q psy7780 133 EEHAPSIVFIDEIDAVGT 150 (317)
Q Consensus 133 ~~~~P~Ii~iDEiD~l~~ 150 (317)
.++.|++|+||-+.++..
T Consensus 94 ~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 94 DRDSASLVVVDSFTALYR 111 (209)
T ss_pred hhcCccEEEEeCcHHHhH
Confidence 666789999999999864
No 249
>KOG1970|consensus
Probab=97.53 E-value=0.00067 Score=66.51 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=24.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEe
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
..|+.||+|||||| .+|.++|..++.-+
T Consensus 112 iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 112 ILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred EEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 46789999999999 99999999887754
No 250
>KOG2228|consensus
Probab=97.50 E-value=0.0021 Score=59.78 Aligned_cols=132 Identities=18% Similarity=0.233 Sum_probs=82.6
Q ss_pred hHHHhhhcCCCchh----hh--hhcCCceEEEE--echhhh-------------------hhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL----AV--ANQTSATFLRV--VGSELI-------------------QKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----ai--A~~~~~~~~~v--~~s~l~-------------------~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+++.||.|+|||. .+ +++.|-+|+.+ ++.-.. .+..|.....+..+....+.
T Consensus 51 sviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~ 130 (408)
T KOG2228|consen 51 SVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKK 130 (408)
T ss_pred ceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhc
Confidence 46788999999998 33 44667676655 332111 12345555556555554443
Q ss_pred h-----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcC
Q psy7780 135 H-----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATN 209 (317)
Q Consensus 135 ~-----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN 209 (317)
. .|.|.++||+|.+++.. -+..+..+.+. .++.. .++.+|+.|.
T Consensus 131 ~~~~t~~~ViFIldEfDlf~~h~----------rQtllYnlfDi---sqs~r------------------~Piciig~Tt 179 (408)
T KOG2228|consen 131 GDETTSGKVIFILDEFDLFAPHS----------RQTLLYNLFDI---SQSAR------------------APICIIGVTT 179 (408)
T ss_pred CCCCCCceEEEEeehhhccccch----------hhHHHHHHHHH---HhhcC------------------CCeEEEEeec
Confidence 2 13355568999997653 12333444443 32221 6799999998
Q ss_pred CCCC---CCccccCCCcceeE-EEeCCC-CHHHHHHHHHHHh
Q psy7780 210 RIET---LDPALIRPGRIDRK-IEFPLP-DEKTKRRIFNIHT 246 (317)
Q Consensus 210 ~~~~---Ld~al~rpgRf~~~-I~~~~P-~~~~r~~Il~~~l 246 (317)
+.+. |...+.+ ||..+ |+++++ ..++-..+++..+
T Consensus 180 rld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 8765 5678888 99655 887766 5677788888776
No 251
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.45 E-value=0.00022 Score=66.76 Aligned_cols=70 Identities=14% Similarity=0.120 Sum_probs=43.4
Q ss_pred hHHHhhhcCCCchh----hh--hhcCCceEEEEechhhhh----------------hhcCCchHHHHHHHHHHHhhCCce
Q psy7780 82 SELIQKYLGDGPKL----AV--ANQTSATFLRVVGSELIQ----------------KYLGDGPKLVRELFRVAEEHAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----ai--A~~~~~~~~~v~~s~l~~----------------~~~g~~~~~l~~~f~~a~~~~P~I 139 (317)
..+++||||||||+ .+ +...+...++++..+-.+ ......+..+..+-..++...+.+
T Consensus 57 iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~l 136 (325)
T cd00983 57 IIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVDL 136 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCCE
Confidence 46789999999999 12 233456666776532111 011122334444444456677899
Q ss_pred Eeeccccccccc
Q psy7780 140 VFIDEIDAVGTK 151 (317)
Q Consensus 140 i~iDEiD~l~~~ 151 (317)
|+||-+-++.+.
T Consensus 137 IVIDSvaal~~~ 148 (325)
T cd00983 137 IVVDSVAALVPK 148 (325)
T ss_pred EEEcchHhhccc
Confidence 999999999864
No 252
>KOG1051|consensus
Probab=97.45 E-value=0.00037 Score=72.56 Aligned_cols=167 Identities=20% Similarity=0.218 Sum_probs=107.0
Q ss_pred HhhhcCCCchh---hhhhcC----------CceEEEEechhhh--hhhcCCchHHHHHHHHHHHhh-CCceEeecccccc
Q psy7780 85 IQKYLGDGPKL---AVANQT----------SATFLRVVGSELI--QKYLGDGPKLVRELFRVAEEH-APSIVFIDEIDAV 148 (317)
Q Consensus 85 l~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~--~~~~g~~~~~l~~~f~~a~~~-~P~Ii~iDEiD~l 148 (317)
+.|.||+|||. -+|+.. +..++.++...+. .++.|+.+..++.+.+.+... ...||||||++.+
T Consensus 213 LVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~l 292 (898)
T KOG1051|consen 213 LVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWL 292 (898)
T ss_pred EEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeee
Confidence 56999999998 333332 3466777766554 357889999999999998844 4567899999999
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccCCCc
Q psy7780 149 GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIRPGR 223 (317)
Q Consensus 149 ~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~rpgR 223 (317)
...... .+..+....|..+|.. +.+.+|+||..-+ .=||++-| |
T Consensus 293 vg~g~~---~~~~d~~nlLkp~L~r--------------------------g~l~~IGatT~e~Y~k~iekdPalEr--r 341 (898)
T KOG1051|consen 293 VGSGSN---YGAIDAANLLKPLLAR--------------------------GGLWCIGATTLETYRKCIEKDPALER--R 341 (898)
T ss_pred ecCCCc---chHHHHHHhhHHHHhc--------------------------CCeEEEecccHHHHHHHHhhCcchhh--C
Confidence 866532 1122333444444433 5688999886322 25899999 9
Q ss_pred ceeEEEeCCCCHHHHHHHHHHHhcCCCCC-----cC---CCHHHHH--HhCCCCCHHHHHHHHHHHHHHH
Q psy7780 224 IDRKIEFPLPDEKTKRRIFNIHTSRMTLA-----ED---VNLQELI--MAKDDLSGADIKAICTEAGLMA 283 (317)
Q Consensus 224 f~~~I~~~~P~~~~r~~Il~~~l~~~~~~-----~~---~~~~~ia--~~t~g~s~~dl~~l~~~A~~~a 283 (317)
|+ .+.++.|+.+.-..||+....+.-.. .+ +....+. ..+..+-|.-...++.+|+...
T Consensus 342 w~-l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~dEa~a~~ 410 (898)
T KOG1051|consen 342 WQ-LVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLEDEAAALV 410 (898)
T ss_pred cc-eeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhcccHHHHHHHHH
Confidence 97 78889999887777777665542111 11 1111111 2244455666667777776543
No 253
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.39 E-value=0.00025 Score=66.25 Aligned_cols=99 Identities=17% Similarity=0.110 Sum_probs=54.2
Q ss_pred hHHHhhhcCCCchh----hhh--hcCCceEEEEechhhhh----------------hhcCCchHHHHHHHHHHHhhCCce
Q psy7780 82 SELIQKYLGDGPKL----AVA--NQTSATFLRVVGSELIQ----------------KYLGDGPKLVRELFRVAEEHAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----aiA--~~~~~~~~~v~~s~l~~----------------~~~g~~~~~l~~~f~~a~~~~P~I 139 (317)
..+++||||||||+ .++ ...+...+++++.+-.+ ......+..+..+....+...+.+
T Consensus 57 iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~l 136 (321)
T TIGR02012 57 IIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDI 136 (321)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCcE
Confidence 46789999999999 122 22355666665533211 011122334444444556678999
Q ss_pred EeecccccccccccCCCC---CchhHHHHHHHHHHHHhcCCCcc
Q psy7780 140 VFIDEIDAVGTKRYDSNS---GGEREIQRTMLELLNQLDGFDSR 180 (317)
Q Consensus 140 i~iDEiD~l~~~r~~~~~---~~~~~~~~~l~~ll~~ld~~~~~ 180 (317)
|+||-+-++.+...-.+. .......+.+.+++..+.+.-..
T Consensus 137 IVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~ 180 (321)
T TIGR02012 137 IVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSK 180 (321)
T ss_pred EEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHh
Confidence 999999999864321111 11112234455666555554433
No 254
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.39 E-value=0.00024 Score=55.60 Aligned_cols=12 Identities=25% Similarity=0.077 Sum_probs=11.0
Q ss_pred HHhhhcCCCchh
Q psy7780 84 LIQKYLGDGPKL 95 (317)
Q Consensus 84 Ll~G~pGtGKT~ 95 (317)
.|+|+||+|||+
T Consensus 2 ~i~G~~G~GKS~ 13 (107)
T PF00910_consen 2 WIYGPPGIGKST 13 (107)
T ss_pred EEECCCCCCHHH
Confidence 479999999998
No 255
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.35 E-value=0.0015 Score=55.76 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=19.0
Q ss_pred HHHHHHHHhhCCceEeecccccccc
Q psy7780 126 RELFRVAEEHAPSIVFIDEIDAVGT 150 (317)
Q Consensus 126 ~~~f~~a~~~~P~Ii~iDEiD~l~~ 150 (317)
..+...+....|.+|+||++..+..
T Consensus 85 ~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 85 QRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 4455555677899999999998764
No 256
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.35 E-value=0.00077 Score=66.07 Aligned_cols=71 Identities=27% Similarity=0.336 Sum_probs=48.3
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhhh------cCC--------chHHHHHHHHHHHhhCCceEe
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQKY------LGD--------GPKLVRELFRVAEEHAPSIVF 141 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~~------~g~--------~~~~l~~~f~~a~~~~P~Ii~ 141 (317)
..+++|+||+|||+ .+|.. .+..+++++..+-.... .|. .+..+..+++..++..|.+|+
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~lVV 161 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPDLVV 161 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCCEEE
Confidence 56899999999999 33332 25677787764422211 111 123466777778888899999
Q ss_pred ecccccccccc
Q psy7780 142 IDEIDAVGTKR 152 (317)
Q Consensus 142 iDEiD~l~~~r 152 (317)
||++..+....
T Consensus 162 IDSIq~l~~~~ 172 (446)
T PRK11823 162 IDSIQTMYSPE 172 (446)
T ss_pred Eechhhhcccc
Confidence 99999987543
No 257
>KOG2680|consensus
Probab=97.32 E-value=0.0013 Score=60.33 Aligned_cols=96 Identities=18% Similarity=0.154 Sum_probs=72.5
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCc-CCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAE-DVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~-~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
|..||-.++. |+ ..|...+++.++.++||++......+.- +..++-+......-|-+---+|+..|.+.|.++...
T Consensus 339 phGiP~D~lD--R~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~ 415 (454)
T KOG2680|consen 339 PHGIPIDLLD--RM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGK 415 (454)
T ss_pred CCCCcHHHhh--hh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCc
Confidence 5668888998 87 4778888899999999999876544432 222333444444556667778899999999999999
Q ss_pred CcCHHHHHHHHHHHHhhhcc
Q psy7780 290 KVTNEDFKKSKESVLYRKKE 309 (317)
Q Consensus 290 ~it~~d~~~al~~v~~~~~~ 309 (317)
.+..+|+.++.+-.+..+++
T Consensus 416 ~v~~~di~r~y~LFlD~~Rs 435 (454)
T KOG2680|consen 416 VVEVDDIERVYRLFLDEKRS 435 (454)
T ss_pred eeehhHHHHHHHHHhhhhhh
Confidence 99999999999887765554
No 258
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.31 E-value=0.0012 Score=61.36 Aligned_cols=118 Identities=12% Similarity=0.148 Sum_probs=76.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc-------------eEEEEe--chhhhhhhcCCchHHHHHHHHHHHh-----hCCc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA-------------TFLRVV--GSELIQKYLGDGPKLVRELFRVAEE-----HAPS 138 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~-------------~~~~v~--~s~l~~~~~g~~~~~l~~~f~~a~~-----~~P~ 138 (317)
.+||+|+.|.||+. .+|+.+-+ .++.++ +.. -+-..++++.+.+.. ...-
T Consensus 20 aYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~-------i~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 20 SFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKD-------LSKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCc-------CCHHHHHHHHHHhccCCcccCCce
Confidence 57899999999998 44444311 233333 211 122456665555422 2346
Q ss_pred eEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccc
Q psy7780 139 IVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPAL 218 (317)
Q Consensus 139 Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al 218 (317)
|++||++|.+... ....|...|++ .. ..+++|.+|+.++.|-|.+
T Consensus 93 vvII~~~e~m~~~-----------a~NaLLK~LEE---Pp---------------------~~t~~il~~~~~~kll~TI 137 (299)
T PRK07132 93 ILIIKNIEKTSNS-----------LLNALLKTIEE---PP---------------------KDTYFLLTTKNINKVLPTI 137 (299)
T ss_pred EEEEecccccCHH-----------HHHHHHHHhhC---CC---------------------CCeEEEEEeCChHhChHHH
Confidence 9999999876321 23344444444 22 5677888888889999999
Q ss_pred cCCCcceeEEEeCCCCHHHHHHHHHH
Q psy7780 219 IRPGRIDRKIEFPLPDEKTKRRIFNI 244 (317)
Q Consensus 219 ~rpgRf~~~I~~~~P~~~~r~~Il~~ 244 (317)
++ |+. .++|++|+.++..+.+..
T Consensus 138 ~S--Rc~-~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 138 VS--RCQ-VFNVKEPDQQKILAKLLS 160 (299)
T ss_pred Hh--CeE-EEECCCCCHHHHHHHHHH
Confidence 99 885 799999998888777664
No 259
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.31 E-value=0.0002 Score=68.18 Aligned_cols=14 Identities=14% Similarity=0.252 Sum_probs=12.7
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
+..++|++|+|||+
T Consensus 64 GlYl~G~vG~GKT~ 77 (362)
T PF03969_consen 64 GLYLWGPVGRGKTM 77 (362)
T ss_pred eEEEECCCCCchhH
Confidence 56799999999998
No 260
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.00019 Score=66.06 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=70.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc----------------eEEEEechhhhhhhcCCchHHHHHHHHHHHhh----CCc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA----------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEEH----APS 138 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~----------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~----~P~ 138 (317)
.+||+||+|+||+. ++|..+-+ .++.+.... -++ .-+-..+|++-+.+... ..-
T Consensus 21 AyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~--~I~idqiR~l~~~~~~~p~e~~~k 97 (290)
T PRK05917 21 AIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGR--LHSIETPRAIKKQIWIHPYESPYK 97 (290)
T ss_pred eEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCC--cCcHHHHHHHHHHHhhCccCCCce
Confidence 57899999999998 44444422 122221100 000 01244566666555432 235
Q ss_pred eEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccc
Q psy7780 139 IVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPAL 218 (317)
Q Consensus 139 Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al 218 (317)
|++||++|.+... .++.|..+|++ - |.++++|..|+.++.|.|.+
T Consensus 98 v~ii~~ad~mt~~-----------AaNaLLK~LEE---P---------------------p~~~~fiL~~~~~~~ll~TI 142 (290)
T PRK05917 98 IYIIHEADRMTLD-----------AISAFLKVLED---P---------------------PQHGVIILTSAKPQRLPPTI 142 (290)
T ss_pred EEEEechhhcCHH-----------HHHHHHHHhhc---C---------------------CCCeEEEEEeCChhhCcHHH
Confidence 9999999998532 24555555555 2 26788999999999999999
Q ss_pred cCCCcceeEEEeCCC
Q psy7780 219 IRPGRIDRKIEFPLP 233 (317)
Q Consensus 219 ~rpgRf~~~I~~~~P 233 (317)
++ |+. .+.|+++
T Consensus 143 ~S--Rcq-~~~~~~~ 154 (290)
T PRK05917 143 RS--RSL-SIHIPME 154 (290)
T ss_pred Hh--cce-EEEccch
Confidence 99 995 7778765
No 261
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.26 E-value=0.00063 Score=62.12 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=41.0
Q ss_pred CeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCC----CCcCCCHHHHHHhCCCCCHHHHHHH
Q psy7780 201 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMT----LAEDVNLQELIMAKDDLSGADIKAI 275 (317)
Q Consensus 201 ~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~----~~~~~~~~~ia~~t~g~s~~dl~~l 275 (317)
+..+|.||...... ...- .-...++++..+.++..++|+....... ........+|++.+.| .|--|..+
T Consensus 129 ~~kilvTTR~~~v~-~~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~ 202 (287)
T PF00931_consen 129 GSKILVTTRDRSVA-GSLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLI 202 (287)
T ss_dssp S-EEEEEESCGGGG-TTHH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred cccccccccccccc-cccc---cccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 45577788654322 1121 1146899999999999999999865433 1112235678888877 46555544
No 262
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.23 E-value=0.014 Score=57.93 Aligned_cols=124 Identities=17% Similarity=0.235 Sum_probs=84.8
Q ss_pred CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCc
Q psy7780 137 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDP 216 (317)
Q Consensus 137 P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~ 216 (317)
|+|++|.|++.++.. ..+.+.+..+....... ++.+||.+. ...+|+
T Consensus 82 ~~~~vl~d~h~~~~~---------~~~~r~l~~l~~~~~~~----------------------~~~~i~~~~--~~~~p~ 128 (489)
T CHL00195 82 PALFLLKDFNRFLND---------ISISRKLRNLSRILKTQ----------------------PKTIIIIAS--ELNIPK 128 (489)
T ss_pred CcEEEEecchhhhcc---------hHHHHHHHHHHHHHHhC----------------------CCEEEEEcC--CCCCCH
Confidence 789999999999832 23455555555443332 334444444 356787
Q ss_pred cccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHH
Q psy7780 217 ALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 295 (317)
Q Consensus 217 al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d 295 (317)
.|.+ +-.++.+|+|+.+++.++++.+....+.. ++.+++.+++.+.|+|-.++++++..+.. . ...++.++
T Consensus 129 el~~---~~~~~~~~lP~~~ei~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~----~-~~~~~~~~ 200 (489)
T CHL00195 129 ELKD---LITVLEFPLPTESEIKKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKIIA----T-YKTIDENS 200 (489)
T ss_pred HHHh---ceeEEeecCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHH----H-cCCCChhh
Confidence 8775 44688999999999999998887644333 45567889999999999999999886432 1 23466666
Q ss_pred HHHHHH
Q psy7780 296 FKKSKE 301 (317)
Q Consensus 296 ~~~al~ 301 (317)
+...++
T Consensus 201 ~~~i~~ 206 (489)
T CHL00195 201 IPLILE 206 (489)
T ss_pred HHHHHH
Confidence 554443
No 263
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.22 E-value=0.001 Score=58.99 Aligned_cols=94 Identities=17% Similarity=0.081 Sum_probs=47.3
Q ss_pred HHHhhhcCCCchh-hhhhcCCceEEEEechh-hhhh---------hcCCchHHHHHHHHHHHh--hCCceEeeccccccc
Q psy7780 83 ELIQKYLGDGPKL-AVANQTSATFLRVVGSE-LIQK---------YLGDGPKLVRELFRVAEE--HAPSIVFIDEIDAVG 149 (317)
Q Consensus 83 ~Ll~G~pGtGKT~-aiA~~~~~~~~~v~~s~-l~~~---------~~g~~~~~l~~~f~~a~~--~~P~Ii~iDEiD~l~ 149 (317)
+||||+||+|||+ |-.-.-...++..+.+. .+.. -....-..+.+.+..+.. ....+|+||.++.+.
T Consensus 15 ~liyG~~G~GKtt~a~~~~~~~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDsI~~l~ 94 (220)
T TIGR01618 15 YLIYGKPGTGKTSTIKYLPGKTLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDNISALQ 94 (220)
T ss_pred EEEECCCCCCHHHHHHhcCCCCEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEecHHHHH
Confidence 5799999999999 22211224455554432 1110 011112233344443332 335799999999875
Q ss_pred c------cccC-C---CCCchhHHHHHHHHHHHHhcC
Q psy7780 150 T------KRYD-S---NSGGEREIQRTMLELLNQLDG 176 (317)
Q Consensus 150 ~------~r~~-~---~~~~~~~~~~~l~~ll~~ld~ 176 (317)
. .+.. . ...+-..+...+..++..+..
T Consensus 95 ~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~ 131 (220)
T TIGR01618 95 NLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKE 131 (220)
T ss_pred HHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHh
Confidence 4 2211 1 112224455556666666554
No 264
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.19 E-value=0.0016 Score=62.35 Aligned_cols=71 Identities=28% Similarity=0.331 Sum_probs=47.1
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhh------hcCC--------chHHHHHHHHHHHhhCCceEe
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQK------YLGD--------GPKLVRELFRVAEEHAPSIVF 141 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~------~~g~--------~~~~l~~~f~~a~~~~P~Ii~ 141 (317)
..+++|+||+|||+ .+|... +..++++++.+-... ..|. .+..+..+++.+....|.+|+
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~lVV 163 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPDLVI 163 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCcEEE
Confidence 56899999999999 344332 346777765431111 1121 133466777778888999999
Q ss_pred ecccccccccc
Q psy7780 142 IDEIDAVGTKR 152 (317)
Q Consensus 142 iDEiD~l~~~r 152 (317)
||++..+....
T Consensus 164 IDSIq~l~~~~ 174 (372)
T cd01121 164 IDSIQTVYSSE 174 (372)
T ss_pred EcchHHhhccc
Confidence 99999986543
No 265
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.19 E-value=0.0011 Score=63.84 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=32.9
Q ss_pred HhCCCCCHHHHHHHHHHHH-HHHHHhcCCCcCHHHHHHHHHHHHhhhc
Q psy7780 262 MAKDDLSGADIKAICTEAG-LMALRERRMKVTNEDFKKSKESVLYRKK 308 (317)
Q Consensus 262 ~~t~g~s~~dl~~l~~~A~-~~a~~~~~~~it~~d~~~al~~v~~~~~ 308 (317)
....+++.+|..++-+... +.-+---...++.+|++++++-.+..++
T Consensus 391 ~l~~~~~~RD~~aV~kt~SgllKLL~P~~~~~~ee~~~~l~~Ale~Rr 438 (449)
T TIGR02688 391 SLSPNLNTRDVIAVKKTFSGLMKILFPHGTITKEEFTECLEPALEGRQ 438 (449)
T ss_pred ecCCCcchhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3456789999888766543 2223234567999999999988887654
No 266
>PF14516 AAA_35: AAA-like domain
Probab=97.19 E-value=0.024 Score=53.45 Aligned_cols=168 Identities=15% Similarity=0.103 Sum_probs=87.1
Q ss_pred HHHhhhcCCCchh------hhhhcCCceEEEEechhhhhhh------------------cC-------------CchHHH
Q psy7780 83 ELIQKYLGDGPKL------AVANQTSATFLRVVGSELIQKY------------------LG-------------DGPKLV 125 (317)
Q Consensus 83 ~Ll~G~pGtGKT~------aiA~~~~~~~~~v~~s~l~~~~------------------~g-------------~~~~~l 125 (317)
..++||..+|||+ .-++..|...+.+++..+-+.. .+ ......
T Consensus 34 ~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~ 113 (331)
T PF14516_consen 34 IRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISC 113 (331)
T ss_pred EEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhH
Confidence 4578999999999 3344457888888776532110 00 011223
Q ss_pred HHHHHHH---HhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCe
Q psy7780 126 RELFRVA---EEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDV 202 (317)
Q Consensus 126 ~~~f~~a---~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v 202 (317)
...|+.. ....|-||+|||+|.++... .-..+....+..+.++-. .... ...+
T Consensus 114 ~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~-----~~~~dF~~~LR~~~~~~~---~~~~----------------~~~L 169 (331)
T PF14516_consen 114 TEYFEEYLLKQIDKPLVLFIDEIDRLFEYP-----QIADDFFGLLRSWYEQRK---NNPI----------------WQKL 169 (331)
T ss_pred HHHHHHHHHhcCCCCEEEEEechhhhccCc-----chHHHHHHHHHHHHHhcc---cCcc----------------cceE
Confidence 3334431 12358899999999997532 111122222222222111 0000 0223
Q ss_pred EEEEEcCCCCCCCccc-cCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHH
Q psy7780 203 KVIMATNRIETLDPAL-IRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTE 278 (317)
Q Consensus 203 ~vI~tTN~~~~Ld~al-~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~ 278 (317)
.+|++......+.... .+|=-+...|.++.-+.++...+++.|-... ... .++.+-..|.| -|.=+..+|..
T Consensus 170 ~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~--~~~-~~~~l~~~tgG-hP~Lv~~~~~~ 242 (331)
T PF14516_consen 170 RLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF--SQE-QLEQLMDWTGG-HPYLVQKACYL 242 (331)
T ss_pred EEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC--CHH-HHHHHHHHHCC-CHHHHHHHHHH
Confidence 3333332222222222 2332344577888889999999998874332 222 27788888888 35455544443
No 267
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.16 E-value=0.00058 Score=60.45 Aligned_cols=69 Identities=13% Similarity=0.200 Sum_probs=38.7
Q ss_pred hHHHhhhcCCCchh---hhhh---cCCceEEEEechhh----hhhhcCC-------------------chHHHHHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVAN---QTSATFLRVVGSEL----IQKYLGD-------------------GPKLVRELFRVA 132 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~---~~~~~~~~v~~s~l----~~~~~g~-------------------~~~~l~~~f~~a 132 (317)
-.+++|+||+|||+ .+|. ..+...+++++..+ +....+. ....++.+....
T Consensus 25 i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 104 (225)
T PRK09361 25 ITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIRKAEKLA 104 (225)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHHHHHHHH
Confidence 35789999999998 3332 23566777766521 1100110 011122222222
Q ss_pred HhhCCceEeeccccccccc
Q psy7780 133 EEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 133 ~~~~P~Ii~iDEiD~l~~~ 151 (317)
. ..+.+|+||-+.++...
T Consensus 105 ~-~~~~lvVIDsi~al~~~ 122 (225)
T PRK09361 105 K-ENVGLIVLDSATSLYRL 122 (225)
T ss_pred H-hcccEEEEeCcHHHhHH
Confidence 2 57899999999998754
No 268
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.15 E-value=0.0012 Score=67.08 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q psy7780 267 LSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 267 ~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~ 305 (317)
.|.++|.++++-|-..|-.+-...|+.+|+.+|++-+..
T Consensus 556 iT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~~ 594 (682)
T COG1241 556 ITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVDF 594 (682)
T ss_pred ccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHH
Confidence 789999999998888888888899999999999988773
No 269
>KOG0478|consensus
Probab=97.15 E-value=0.0025 Score=64.02 Aligned_cols=83 Identities=27% Similarity=0.408 Sum_probs=47.2
Q ss_pred ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC----
Q psy7780 138 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET---- 213 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~---- 213 (317)
.|-.|||+|.+... ..++|-+.+++-.- . .-+.+-..-++.+.-|||++|..+.
T Consensus 528 GiCCIDEFDKM~dS-----------trSvLhEvMEQQTv-S----------IAKAGII~sLNAR~SVLAaANP~~skynp 585 (804)
T KOG0478|consen 528 GICCIDEFDKMSDS-----------TRSVLHEVMEQQTL-S----------IAKAGIIASLNARCSVLAAANPIRSKYNP 585 (804)
T ss_pred ceEEchhhhhhhHH-----------HHHHHHHHHHHhhh-h----------HhhcceeeeccccceeeeeeccccccCCC
Confidence 47789999998322 13455565554210 0 0011111233456669999996432
Q ss_pred ---------CCccccCCCcceeEE-EeCCCCHHHHHHHHHH
Q psy7780 214 ---------LDPALIRPGRIDRKI-EFPLPDEKTKRRIFNI 244 (317)
Q Consensus 214 ---------Ld~al~rpgRf~~~I-~~~~P~~~~r~~Il~~ 244 (317)
|+|.|++ |||.+. -+..|++..=+.|-..
T Consensus 586 ~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~H 624 (804)
T KOG0478|consen 586 NKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADH 624 (804)
T ss_pred CCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHH
Confidence 8999999 999554 3455665433344333
No 270
>KOG0480|consensus
Probab=97.12 E-value=0.0017 Score=64.66 Aligned_cols=144 Identities=19% Similarity=0.190 Sum_probs=87.2
Q ss_pred ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC----
Q psy7780 138 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET---- 213 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~---- 213 (317)
.|-.|||+|..-.+. +..+-+.+++ ..-+ ..+.+...-++.+--+|||+|....
T Consensus 444 GICCIDEFDKMd~~d-----------qvAihEAMEQ---QtIS--------IaKAGv~aTLnARtSIlAAANPv~GhYdR 501 (764)
T KOG0480|consen 444 GICCIDEFDKMDVKD-----------QVAIHEAMEQ---QTIS--------IAKAGVVATLNARTSILAAANPVGGHYDR 501 (764)
T ss_pred ceEEechhcccChHh-----------HHHHHHHHHh---heeh--------heecceEEeecchhhhhhhcCCcCCcccc
Confidence 588999999874322 2333344443 1111 1122223344456668999988643
Q ss_pred ---------CCccccCCCcceeE-EEeCCCCHHHHHHHHHHHhcCCC-CCcC------CCH-------------------
Q psy7780 214 ---------LDPALIRPGRIDRK-IEFPLPDEKTKRRIFNIHTSRMT-LAED------VNL------------------- 257 (317)
Q Consensus 214 ---------Ld~al~rpgRf~~~-I~~~~P~~~~r~~Il~~~l~~~~-~~~~------~~~------------------- 257 (317)
+.+++++ |||.. |-+..|++..=..|-+..+.... ++.. ...
T Consensus 502 ~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P~ls~ 579 (764)
T KOG0480|consen 502 KKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYARNFKPKLSK 579 (764)
T ss_pred ccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHHhcCccccH
Confidence 7899999 99943 45667877666666555443210 0000 000
Q ss_pred ---HHHHH---------------hCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q psy7780 258 ---QELIM---------------AKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 258 ---~~ia~---------------~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~ 305 (317)
+.+.+ .+.+.|-++|+.+++-+-..|.-+-+..+|.+|+++|.+-+.+
T Consensus 580 ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLlk~ 645 (764)
T KOG0480|consen 580 EASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELLKK 645 (764)
T ss_pred HHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHh
Confidence 11111 1236889999999997776776677889999999999987654
No 271
>PRK14700 recombination factor protein RarA; Provisional
Probab=97.10 E-value=0.0029 Score=58.11 Aligned_cols=101 Identities=17% Similarity=0.176 Sum_probs=68.7
Q ss_pred CCeEEEEEc--CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC------CCC-cCCCHHHHHHhCCCCCHH
Q psy7780 200 GDVKVIMAT--NRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM------TLA-EDVNLQELIMAKDDLSGA 270 (317)
Q Consensus 200 ~~v~vI~tT--N~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~------~~~-~~~~~~~ia~~t~g~s~~ 270 (317)
+.|++|+|| |..-.+.+||++ |+ +++.+.+++.++...++++.+... .+. ++..+..|+..+.|
T Consensus 7 G~i~LIGATTENP~f~vn~ALlS--R~-~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~G---- 79 (300)
T PRK14700 7 GKIILIGATTENPTYYLNDALVS--RL-FILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEG---- 79 (300)
T ss_pred CcEEEEeecCCCccceecHhhhh--hh-heeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCC----
Confidence 789999888 778889999999 99 589999999999999999887531 111 22335556666555
Q ss_pred HHHHHHH---HHHHHHHHhcCCCcCHHHHHHHHHHHHhhh
Q psy7780 271 DIKAICT---EAGLMALRERRMKVTNEDFKKSKESVLYRK 307 (317)
Q Consensus 271 dl~~l~~---~A~~~a~~~~~~~it~~d~~~al~~v~~~~ 307 (317)
|.+..++ .|...+.......||.+++++++.+....+
T Consensus 80 DaR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~y 119 (300)
T PRK14700 80 DCRKILNLLERMFLISTRGDEIYLNKELFDQAVGETSRDF 119 (300)
T ss_pred HHHHHHHHHHHHHhhccccCCCccCHHHHHHHHhHHHhcc
Confidence 6554444 333211111122499999999887654444
No 272
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.07 E-value=0.0027 Score=68.66 Aligned_cols=178 Identities=16% Similarity=0.082 Sum_probs=101.2
Q ss_pred hHHHhhhcCCCchh----hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhC--------C------ceEeec
Q psy7780 82 SELIQKYLGDGPKL----AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA--------P------SIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~--------P------~Ii~iD 143 (317)
.++|.||||+|||+ ++-+++-..++.++.+.-. .++..++.+-+...... | -|+|.|
T Consensus 1496 ~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcD 1570 (3164)
T COG5245 1496 SYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCD 1570 (3164)
T ss_pred eEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEee
Confidence 57899999999999 7888888888888765421 12333333322221111 1 289999
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCC-----ccc
Q psy7780 144 EIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD-----PAL 218 (317)
Q Consensus 144 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld-----~al 218 (317)
||. .+....-.... .=.+..-|-+-+|+.+.....-. -=.++++.+++|.+...- ..+
T Consensus 1571 eIn--Lp~~~~y~~~~----vI~FlR~l~e~QGfw~s~~~~wv-----------TI~~i~l~Gacnp~td~gRv~~~eRf 1633 (3164)
T COG5245 1571 EIN--LPYGFEYYPPT----VIVFLRPLVERQGFWSSIAVSWV-----------TICGIILYGACNPGTDEGRVKYYERF 1633 (3164)
T ss_pred ccC--CccccccCCCc----eEEeeHHHHHhcccccchhhhHh-----------hhcceEEEccCCCCCCcccCccHHHH
Confidence 999 33321111111 11222233344666654221111 116799999999876532 334
Q ss_pred cCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCc-C------------CCHH--------HHHHhCCCCCHHHHHHHHH
Q psy7780 219 IRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAE-D------------VNLQ--------ELIMAKDDLSGADIKAICT 277 (317)
Q Consensus 219 ~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~-~------------~~~~--------~ia~~t~g~s~~dl~~l~~ 277 (317)
+| | ...+++.+|.......|...++.+.-+.. + +.+- ...+.-.+|+|+|+...++
T Consensus 1634 ~r--~-~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr 1710 (3164)
T COG5245 1634 IR--K-PVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLR 1710 (3164)
T ss_pred hc--C-ceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHH
Confidence 43 2 25688999999999999988876532211 0 0000 0011125899999999988
Q ss_pred HHHHHHH
Q psy7780 278 EAGLMAL 284 (317)
Q Consensus 278 ~A~~~a~ 284 (317)
.--..|-
T Consensus 1711 ~i~~yae 1717 (3164)
T COG5245 1711 AIFGYAE 1717 (3164)
T ss_pred HHHhHHh
Confidence 4444443
No 273
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=96.90 E-value=0.002 Score=58.34 Aligned_cols=59 Identities=15% Similarity=0.212 Sum_probs=43.9
Q ss_pred CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCc
Q psy7780 137 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDP 216 (317)
Q Consensus 137 P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~ 216 (317)
.-|++|+++|.+... ....|..+|++ - |.++++|.+|+.++.+.|
T Consensus 89 ~KV~II~~ae~m~~~-----------AaNaLLK~LEE---P---------------------p~~t~fiLit~~~~~lLp 133 (261)
T PRK05818 89 KKIYIIYGIEKLNKQ-----------SANSLLKLIEE---P---------------------PKNTYGIFTTRNENNILN 133 (261)
T ss_pred CEEEEeccHhhhCHH-----------HHHHHHHhhcC---C---------------------CCCeEEEEEECChHhCch
Confidence 469999999988432 23444444444 2 267889999999999999
Q ss_pred cccCCCcceeEEEeCCC
Q psy7780 217 ALIRPGRIDRKIEFPLP 233 (317)
Q Consensus 217 al~rpgRf~~~I~~~~P 233 (317)
.+++ |+. .+.|+.+
T Consensus 134 TI~S--RCq-~~~~~~~ 147 (261)
T PRK05818 134 TILS--RCV-QYVVLSK 147 (261)
T ss_pred Hhhh--hee-eeecCCh
Confidence 9999 985 5777776
No 274
>PRK09354 recA recombinase A; Provisional
Probab=96.85 E-value=0.0014 Score=61.90 Aligned_cols=70 Identities=14% Similarity=0.101 Sum_probs=42.4
Q ss_pred hHHHhhhcCCCchh------hhhhcCCceEEEEechhhhh------------h----hcCCchHHHHHHHHHHHhhCCce
Q psy7780 82 SELIQKYLGDGPKL------AVANQTSATFLRVVGSELIQ------------K----YLGDGPKLVRELFRVAEEHAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~------aiA~~~~~~~~~v~~s~l~~------------~----~~g~~~~~l~~~f~~a~~~~P~I 139 (317)
..+++||||||||+ +-+...|-..++++..+-.+ . .....+..+..+-...+...+.+
T Consensus 62 IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~l 141 (349)
T PRK09354 62 IVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVDL 141 (349)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCCE
Confidence 46789999999999 22233466666665533111 0 01112333333334455677899
Q ss_pred Eeeccccccccc
Q psy7780 140 VFIDEIDAVGTK 151 (317)
Q Consensus 140 i~iDEiD~l~~~ 151 (317)
|+||=+-++.+.
T Consensus 142 IVIDSvaaL~~~ 153 (349)
T PRK09354 142 IVVDSVAALVPK 153 (349)
T ss_pred EEEeChhhhcch
Confidence 999999999863
No 275
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.82 E-value=0.0028 Score=55.69 Aligned_cols=28 Identities=11% Similarity=0.035 Sum_probs=19.5
Q ss_pred HHHhhhcCCCchh---hhhhc---CCceEEEEec
Q psy7780 83 ELIQKYLGDGPKL---AVANQ---TSATFLRVVG 110 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~ 110 (317)
.+++|+||+|||+ .+|.+ .+.+.++++.
T Consensus 22 ~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 22 TQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 5689999999999 33332 2556666654
No 276
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.015 Score=59.26 Aligned_cols=154 Identities=22% Similarity=0.315 Sum_probs=93.2
Q ss_pred ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC--CCCC
Q psy7780 138 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI--ETLD 215 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~--~~Ld 215 (317)
-||||||+..|.... ....|..++..-.-...+.. +....-+..-..|.++.+|+..|+- ..+.
T Consensus 227 GVLiIdei~lL~~~~----------~w~~LKa~~~k~~~~~~~~~----~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~ 292 (647)
T COG1067 227 GVLIIDEIGLLAQPL----------QWKLLKALLDKEQPIWGSSE----PSSGAPVRPESVPLDLKLILAGNREDLEDLH 292 (647)
T ss_pred cEEEEEhhhhhCcHH----------HHHHHHHHHhccccccCcCc----cccCcccCCCCcccceEEEeeCCHHHHHhhc
Confidence 599999999886332 23444444433111111100 0011223345566788899999873 3344
Q ss_pred c---cccCCCcceeEEEe--CCC-CHHHHHHHHHHHhcCCCCC------cCCCHHHHH----HhCC-----CCCHHHHHH
Q psy7780 216 P---ALIRPGRIDRKIEF--PLP-DEKTKRRIFNIHTSRMTLA------EDVNLQELI----MAKD-----DLSGADIKA 274 (317)
Q Consensus 216 ~---al~rpgRf~~~I~~--~~P-~~~~r~~Il~~~l~~~~~~------~~~~~~~ia----~~t~-----g~s~~dl~~ 274 (317)
+ .++. =|....+| +.| +.+.|.++++.+.+.+..+ ....+..|. +++. -.+++||.+
T Consensus 293 ~~~~~r~~--g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~ 370 (647)
T COG1067 293 EPDRSRIE--GFGYEAEFEDTMPITDANRSKLVQFYVQELARDGNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGN 370 (647)
T ss_pred ccCHHHHh--hcceEEEEcCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhccccceeccCHHHHHH
Confidence 4 4443 24444555 456 7799999998886543211 111222222 2221 268999999
Q ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhh
Q psy7780 275 ICTEAGLMALRERRMKVTNEDFKKSKESVLYRK 307 (317)
Q Consensus 275 l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~ 307 (317)
++++|+..|..+++..|+.+|+++|+++.....
T Consensus 371 lv~~A~~ia~~~~~~~I~ae~Ve~a~~~~~~~e 403 (647)
T COG1067 371 LVREAGDIAVSEGRKLITAEDVEEALQKRELRE 403 (647)
T ss_pred HHHHhhHHHhcCCcccCcHHHHHHHHHhhhhHH
Confidence 999999999999999999999999999855433
No 277
>PRK08118 topology modulation protein; Reviewed
Probab=96.78 E-value=0.0021 Score=54.44 Aligned_cols=41 Identities=24% Similarity=0.216 Sum_probs=30.2
Q ss_pred EEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhc
Q psy7780 204 VIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTS 247 (317)
Q Consensus 204 vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~ 247 (317)
.|.-.|....++..+ . ++|..|++..|...-...+++..++
T Consensus 62 wVidG~~~~~~~~~l-~--~~d~vi~Ld~p~~~~~~R~~~R~~~ 102 (167)
T PRK08118 62 WIIDGNYGGTMDIRL-N--AADTIIFLDIPRTICLYRAFKRRVQ 102 (167)
T ss_pred EEEeCCcchHHHHHH-H--hCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 555666666666444 3 6899999999988777888888765
No 278
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.71 E-value=0.0051 Score=67.26 Aligned_cols=60 Identities=18% Similarity=0.291 Sum_probs=37.1
Q ss_pred EEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCH----HHHHHhCCCCC
Q psy7780 203 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNL----QELIMAKDDLS 268 (317)
Q Consensus 203 ~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~----~~ia~~t~g~s 268 (317)
.||.||.+.. +.+...+++.++++.|+.++..+++..+.-+.... ..++ .++++++.|+.
T Consensus 326 rIIiTTrd~~-----vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv~~c~GLP 389 (1153)
T PLN03210 326 RIIVITKDKH-----FLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVALRAGNLP 389 (1153)
T ss_pred EEEEEeCcHH-----HHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHhCCCc
Confidence 3667776533 33322467789999999999999998875432211 1222 34556667654
No 279
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.64 E-value=0.0049 Score=56.39 Aligned_cols=64 Identities=22% Similarity=0.189 Sum_probs=38.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc----------eEEEEe-chhhhhhhc-------CC------chHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA----------TFLRVV-GSELIQKYL-------GD------GPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~----------~~~~v~-~s~l~~~~~-------g~------~~~~l~~~f~~a~~ 134 (317)
..++.||||+|||| +++..+.- .+..++ ..++...+. |. .......++..++.
T Consensus 113 ~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~~ 192 (270)
T TIGR02858 113 NTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIRS 192 (270)
T ss_pred EEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHHh
Confidence 34788999999999 77776632 332222 223322211 11 11123346667777
Q ss_pred hCCceEeeccc
Q psy7780 135 HAPSIVFIDEI 145 (317)
Q Consensus 135 ~~P~Ii~iDEi 145 (317)
+.|.||++||+
T Consensus 193 ~~P~villDE~ 203 (270)
T TIGR02858 193 MSPDVIVVDEI 203 (270)
T ss_pred CCCCEEEEeCC
Confidence 89999999995
No 280
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.62 E-value=0.0011 Score=57.69 Aligned_cols=65 Identities=18% Similarity=0.354 Sum_probs=39.8
Q ss_pred hhHHHhhhcCCCchh---hhhhcCC----ceEEEEech-hhh---------hhhcCCchHHHHHHHHHHHhhCCceEeec
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTS----ATFLRVVGS-ELI---------QKYLGDGPKLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~----~~~~~v~~s-~l~---------~~~~g~~~~~l~~~f~~a~~~~P~Ii~iD 143 (317)
|-+++.||+|+|||| +++.++. ..++.+..+ ++. ...+|.......+.+..+....|.+|++|
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~g 81 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVG 81 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEc
Confidence 446789999999999 5555553 223332211 211 11123333445666677777889999999
Q ss_pred cc
Q psy7780 144 EI 145 (317)
Q Consensus 144 Ei 145 (317)
|+
T Consensus 82 Ei 83 (198)
T cd01131 82 EM 83 (198)
T ss_pred CC
Confidence 97
No 281
>PRK04296 thymidine kinase; Provisional
Probab=96.57 E-value=0.0048 Score=53.36 Aligned_cols=65 Identities=20% Similarity=0.275 Sum_probs=35.1
Q ss_pred HHHhhhcCCCchh---hhhh---cCCceEEEEech-h-------hhhhhcCCc-----hHHHHHHHHHHHh--hCCceEe
Q psy7780 83 ELIQKYLGDGPKL---AVAN---QTSATFLRVVGS-E-------LIQKYLGDG-----PKLVRELFRVAEE--HAPSIVF 141 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~---~~~~~~~~v~~s-~-------l~~~~~g~~-----~~~l~~~f~~a~~--~~P~Ii~ 141 (317)
.+++|+||+|||+ .++. ..+..++.++++ + +.+ ..|.. .....++++.++. ..+.+|+
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~-~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVS-RIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEec-CCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 5689999999998 2222 235555555431 1 111 11211 1123445554433 4567999
Q ss_pred ecccccc
Q psy7780 142 IDEIDAV 148 (317)
Q Consensus 142 iDEiD~l 148 (317)
|||+..+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999544
No 282
>KOG1942|consensus
Probab=96.55 E-value=0.00078 Score=61.47 Aligned_cols=50 Identities=26% Similarity=0.366 Sum_probs=40.7
Q ss_pred hHHHhhhcCCCchh---hhhhcCC--ceEEEEechhhhhhhcCCchHHHHHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS--ATFLRVVGSELIQKYLGDGPKLVRELFRVA 132 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~--~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a 132 (317)
.+||.||||||||. ++++|+| .||..+.+|++.+..+..++ .+.+-|.+|
T Consensus 66 avLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKKTE-vLmenfRRa 120 (456)
T KOG1942|consen 66 AVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKKTE-VLMENFRRA 120 (456)
T ss_pred EEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhHHH-HHHHHHHHH
Confidence 68999999999998 9999996 68999999999887666555 445556665
No 283
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0058 Score=56.94 Aligned_cols=104 Identities=23% Similarity=0.326 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHhhCCceEeecccccccccccCCC-CCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCC
Q psy7780 122 PKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSN-SGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPG 200 (317)
Q Consensus 122 ~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~-~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (317)
+...++..+.|..+ .||||||||.++.+.+..+ +-+..-+|+ .+|-.+.|..-+... + ....+
T Consensus 238 e~i~~eAi~~aE~~--GIvFIDEIDKIa~~~~~g~~dvSREGVQR---DlLPlvEGstV~TKy--G---------~VkTd 301 (444)
T COG1220 238 EEIKQEAIDAAEQN--GIVFIDEIDKIAKRGGSGGPDVSREGVQR---DLLPLVEGSTVSTKY--G---------PVKTD 301 (444)
T ss_pred HHHHHHHHHHHHhc--CeEEEehhhHHHhcCCCCCCCcchhhhcc---cccccccCceeeccc--c---------ccccc
Confidence 34445555656555 6999999999998764222 222233444 444445554322000 0 11126
Q ss_pred CeEEEEEc----CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHH
Q psy7780 201 DVKVIMAT----NRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFN 243 (317)
Q Consensus 201 ~v~vI~tT----N~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~ 243 (317)
++++|++- ..|+.|=|.|.- ||..++++...+.+.-..||.
T Consensus 302 HILFIasGAFh~sKPSDLiPELQG--RfPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 302 HILFIASGAFHVAKPSDLIPELQG--RFPIRVELDALTKEDFERILT 346 (444)
T ss_pred eEEEEecCceecCChhhcChhhcC--CCceEEEcccCCHHHHHHHHc
Confidence 78999875 568888889976 999999999999998888874
No 284
>KOG2170|consensus
Probab=96.53 E-value=0.0081 Score=55.12 Aligned_cols=63 Identities=17% Similarity=0.290 Sum_probs=37.6
Q ss_pred HHhhhcCCCchh---hhhhcCC-----ceEEEE-----ec--hhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccc
Q psy7780 84 LIQKYLGDGPKL---AVANQTS-----ATFLRV-----VG--SELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAV 148 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~-----~~~~~v-----~~--s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l 148 (317)
-|+|++||||.. .+|+.+- .+++.. ++ ..-++.|. ++.-..+-..++.++.+|.++||+|.+
T Consensus 114 SfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk---~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 114 SFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYK---EELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred EecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHH---HHHHHHHHHHHHhcCCceEEechhhhc
Confidence 389999999998 7887652 122111 01 11122222 222233444566777899999999998
Q ss_pred c
Q psy7780 149 G 149 (317)
Q Consensus 149 ~ 149 (317)
-
T Consensus 191 p 191 (344)
T KOG2170|consen 191 P 191 (344)
T ss_pred C
Confidence 4
No 285
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0057 Score=58.36 Aligned_cols=153 Identities=22% Similarity=0.315 Sum_probs=91.3
Q ss_pred ceEeechh-------hHHHhhhcCCCchh---hhhhcC--CceEEEEechhhhh------hhcC--------CchHHHHH
Q psy7780 74 ATFLRVVG-------SELIQKYLGDGPKL---AVANQT--SATFLRVVGSELIQ------KYLG--------DGPKLVRE 127 (317)
Q Consensus 74 ~~~~~i~g-------~~Ll~G~pGtGKT~---aiA~~~--~~~~~~v~~s~l~~------~~~g--------~~~~~l~~ 127 (317)
..|+++-| .+|+-|-||.|||| .+|..+ ...+.+|++.+=.. +-.| -.+.++.+
T Consensus 80 ~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~ 159 (456)
T COG1066 80 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLED 159 (456)
T ss_pred HHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHH
Confidence 45677655 57888999999999 333222 22788998754222 2222 23667899
Q ss_pred HHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEE
Q psy7780 128 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMA 207 (317)
Q Consensus 128 ~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~t 207 (317)
+.+.+.+..|.+++||-|..+....-++..+.-.++.....+++.. ....+ -.+++++.
T Consensus 160 I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~-AK~~~--------------------i~~fiVGH 218 (456)
T COG1066 160 IIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRL-AKTKN--------------------IAIFIVGH 218 (456)
T ss_pred HHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHH-HHHcC--------------------CeEEEEEE
Confidence 9999999999999999999998765443344333333333333332 11110 23556665
Q ss_pred cCCCCCC-CccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC
Q psy7780 208 TNRIETL-DPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM 249 (317)
Q Consensus 208 TN~~~~L-d~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~ 249 (317)
...--.| -|.++- +-.|.+++|.- ++.....|++.+-+++
T Consensus 219 VTKeG~IAGPrvLE-HmVDtVlyFEG-d~~~~~RiLR~vKNRF 259 (456)
T COG1066 219 VTKEGAIAGPRVLE-HMVDTVLYFEG-DRHSRYRILRSVKNRF 259 (456)
T ss_pred EcccccccCchhee-eeeeEEEEEec-cCCCceeeeehhcccC
Confidence 5544333 233333 13567777754 5556677777665444
No 286
>PRK07261 topology modulation protein; Provisional
Probab=96.51 E-value=0.003 Score=53.70 Aligned_cols=42 Identities=17% Similarity=0.048 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhc
Q psy7780 204 VIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTS 247 (317)
Q Consensus 204 vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~ 247 (317)
.|.-.|....+-+..+. ++|.+|.+..|...-...+++....
T Consensus 61 wIidg~~~~~~~~~~l~--~ad~vI~Ld~p~~~~~~R~lkR~~~ 102 (171)
T PRK07261 61 WIIDGNYSWCLYEERMQ--EADQIIFLNFSRFNCLYRAFKRYLK 102 (171)
T ss_pred EEEcCcchhhhHHHHHH--HCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 44444444434334445 7899999999988888888888764
No 287
>PHA00729 NTP-binding motif containing protein
Probab=96.50 E-value=0.0012 Score=58.50 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=17.1
Q ss_pred HHHhhhcCCCchh---hhhhcCC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS 102 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~ 102 (317)
+++.|+||||||+ ++|++++
T Consensus 20 IlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 20 AVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999 7777765
No 288
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.49 E-value=0.00067 Score=53.66 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=23.2
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEec
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVG 110 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~ 110 (317)
+++.|+||+|||| .+|+.+|++++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 3578999999999 899999988776543
No 289
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.48 E-value=0.005 Score=58.90 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=27.8
Q ss_pred EEEeeeeecCCcEEEecc-----cCCeeeeeeccccCccCcCcccEEEEe
Q psy7780 3 VGTLEEIIDDNHAIVSTS-----VGSEHYVSILSFVDKDQLEPGCSVLLN 47 (317)
Q Consensus 3 ~~~~~~~l~~~~~~v~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~ 47 (317)
+.-+.|++.++.....+. .++.-+.--.+.+.+..|+.||.|.-.
T Consensus 51 ~~g~le~~~~g~gflr~~~~~y~~~~~d~yvs~~~ir~~~lr~gd~v~g~ 100 (416)
T PRK09376 51 GEGVLEILPDGFGFLRSPDANYLPGPDDIYVSPSQIRRFNLRTGDTVEGK 100 (416)
T ss_pred EEEEEEEcCCCCeEEeCCCcCCCCCCCCeeeCHHHHHhcCCCCCCEEEEE
Confidence 455778887776665542 222222222566777889999998753
No 290
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.48 E-value=0.064 Score=50.05 Aligned_cols=132 Identities=17% Similarity=0.130 Sum_probs=68.4
Q ss_pred HHHHHHHHHh--h-CCceEeecccccccccccCCCC---CchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccC
Q psy7780 125 VRELFRVAEE--H-APSIVFIDEIDAVGTKRYDSNS---GGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYL 198 (317)
Q Consensus 125 l~~~f~~a~~--~-~P~Ii~iDEiD~l~~~r~~~~~---~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~ 198 (317)
+..++++... . .|.++-+|++.+++....--.. .-...-..+...|+..+.+-..-.
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~----------------- 204 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFK----------------- 204 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccC-----------------
Confidence 4444444432 2 4778899999999876321111 112222334445555444333221
Q ss_pred CCCeEE--EEEcCC---CC--CCCccccCCCc------ce-------------eEEEeCCCCHHHHHHHHHHHhcCCCCC
Q psy7780 199 PGDVKV--IMATNR---IE--TLDPALIRPGR------ID-------------RKIEFPLPDEKTKRRIFNIHTSRMTLA 252 (317)
Q Consensus 199 ~~~v~v--I~tTN~---~~--~Ld~al~rpgR------f~-------------~~I~~~~P~~~~r~~Il~~~l~~~~~~ 252 (317)
+..+| +++|.. +. .++.++..... |. ..|+++..+.+|-..+++.+...--+.
T Consensus 205 -nG~~v~~l~~t~~~~~~~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~ 283 (309)
T PF10236_consen 205 -NGAVVTALAATSVSNAPKSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLR 283 (309)
T ss_pred -CCeEEEEEeccccccccCCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccc
Confidence 33333 555532 33 56666664111 11 268999999999999999987654333
Q ss_pred c---CCCHHHHHHhCCCCCHHHHHH
Q psy7780 253 E---DVNLQELIMAKDDLSGADIKA 274 (317)
Q Consensus 253 ~---~~~~~~ia~~t~g~s~~dl~~ 274 (317)
. +....+--..+.|-+|+++.+
T Consensus 284 ~~~~~~~~~e~~~~~s~GNp~el~k 308 (309)
T PF10236_consen 284 SRVDEELVLEKLFLSSNGNPRELEK 308 (309)
T ss_pred cCCCCHHHHHHHHHhcCCCHHHhcc
Confidence 2 111222222234557777653
No 291
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.45 E-value=0.0084 Score=53.52 Aligned_cols=68 Identities=21% Similarity=0.306 Sum_probs=40.7
Q ss_pred hHHHhhhcCCCchh---hhhh---cCCceEEEEech----hhhhhh--cC-------------------------CchHH
Q psy7780 82 SELIQKYLGDGPKL---AVAN---QTSATFLRVVGS----ELIQKY--LG-------------------------DGPKL 124 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~---~~~~~~~~v~~s----~l~~~~--~g-------------------------~~~~~ 124 (317)
..++.|+||||||+ .++. .-+...++++.. +++... .| +....
T Consensus 26 ~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 105 (230)
T PRK08533 26 LILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSEKRKF 105 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHHHHHH
Confidence 36789999999999 2222 225566666542 111110 00 01334
Q ss_pred HHHHHHHHHhhCCceEeeccccccc
Q psy7780 125 VRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 125 l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
+..+.+.+....|.++++||+-.+.
T Consensus 106 l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 106 LKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHhcCCCEEEEECccHHh
Confidence 4555666666678999999998875
No 292
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.42 E-value=0.011 Score=49.60 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=14.7
Q ss_pred HHHHHHHHhhCCceEeecccccc
Q psy7780 126 RELFRVAEEHAPSIVFIDEIDAV 148 (317)
Q Consensus 126 ~~~f~~a~~~~P~Ii~iDEiD~l 148 (317)
-...+.|.+.+ .+|+||||..+
T Consensus 91 ~~al~rA~~~a-DvIIIDEIGpM 112 (179)
T COG1618 91 IPALRRALEEA-DVIIIDEIGPM 112 (179)
T ss_pred HHHHHHHhhcC-CEEEEecccch
Confidence 33445555554 79999999765
No 293
>PRK13949 shikimate kinase; Provisional
Probab=96.35 E-value=0.0069 Score=51.40 Aligned_cols=27 Identities=22% Similarity=0.465 Sum_probs=24.1
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEe
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
+++.|+||+|||+ .+|+.++++|+..+
T Consensus 4 I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 4 IFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 4678999999999 99999999988876
No 294
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.31 E-value=0.0096 Score=58.53 Aligned_cols=70 Identities=29% Similarity=0.275 Sum_probs=44.9
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhhh------hcCC--------chHHHHHHHHHHHhhCCceEe
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQK------YLGD--------GPKLVRELFRVAEEHAPSIVF 141 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~~------~~g~--------~~~~l~~~f~~a~~~~P~Ii~ 141 (317)
..++.|+||+|||+ .+|.. .+.+++++++.+-... -.|- .+..+..+.+.+.+..|.+|+
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~~~vV 175 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENPQACV 175 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCCcEEE
Confidence 57899999999999 33222 2346777765332111 0111 123456667777788899999
Q ss_pred eccccccccc
Q psy7780 142 IDEIDAVGTK 151 (317)
Q Consensus 142 iDEiD~l~~~ 151 (317)
||.|-.+...
T Consensus 176 IDSIq~l~~~ 185 (454)
T TIGR00416 176 IDSIQTLYSP 185 (454)
T ss_pred Eecchhhccc
Confidence 9999988643
No 295
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=96.30 E-value=0.11 Score=48.02 Aligned_cols=83 Identities=16% Similarity=0.346 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHh----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccccc
Q psy7780 122 PKLVRELFRVAEE----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIY 197 (317)
Q Consensus 122 ~~~l~~~f~~a~~----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 197 (317)
-..+|++-+.+.. ....|++||++|.+... ..+.|...|++ -.
T Consensus 86 idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~-----------AaNaLLKtLEE---Pp------------------- 132 (290)
T PRK07276 86 TDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVN-----------AANSLLKVIEE---PQ------------------- 132 (290)
T ss_pred HHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHH-----------HHHHHHHHhcC---CC-------------------
Confidence 3567776665543 22369999999998532 23444444444 21
Q ss_pred CCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHH
Q psy7780 198 LPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFN 243 (317)
Q Consensus 198 ~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~ 243 (317)
.++++|.+|+.++.|-|.+++ |+. .|.|+. +.++..+++.
T Consensus 133 --~~t~~iL~t~~~~~lLpTI~S--Rcq-~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 133 --SEIYIFLLTNDENKVLPTIKS--RTQ-IFHFPK-NEAYLIQLLE 172 (290)
T ss_pred --CCeEEEEEECChhhCchHHHH--cce-eeeCCC-cHHHHHHHHH
Confidence 568899999999999999999 994 788876 5565555554
No 296
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.25 E-value=0.011 Score=50.27 Aligned_cols=92 Identities=14% Similarity=0.126 Sum_probs=51.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh-----------------hcCCchHHHHHHHHHHHhhCCceEee
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK-----------------YLGDGPKLVRELFRVAEEHAPSIVFI 142 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~-----------------~~g~~~~~l~~~f~~a~~~~P~Ii~i 142 (317)
.|+.|+||+|||+ .++...+.+.+++....-.+. ...|....+.+.+.... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 4678999999999 555556667777754432211 12233445555543222 4679999
Q ss_pred cccccccccccCCCCCc-hhHHHHHHHHHHHHhcC
Q psy7780 143 DEIDAVGTKRYDSNSGG-EREIQRTMLELLNQLDG 176 (317)
Q Consensus 143 DEiD~l~~~r~~~~~~~-~~~~~~~l~~ll~~ld~ 176 (317)
|-+..+..+.-..+... ...+...+..++..+..
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~ 114 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRN 114 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHc
Confidence 99988765542211110 12233445556666554
No 297
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.24 E-value=0.0041 Score=55.60 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=13.3
Q ss_pred HHHHHHhhCCceEeeccc
Q psy7780 128 LFRVAEEHAPSIVFIDEI 145 (317)
Q Consensus 128 ~f~~a~~~~P~Ii~iDEi 145 (317)
.+.+|-...|.|+++||=
T Consensus 140 aiARAL~~~P~lLLlDEP 157 (248)
T COG1116 140 AIARALATRPKLLLLDEP 157 (248)
T ss_pred HHHHHHhcCCCEEEEcCC
Confidence 344555677999999994
No 298
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.24 E-value=0.0061 Score=53.72 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=23.9
Q ss_pred hhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCC
Q psy7780 134 EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFD 178 (317)
Q Consensus 134 ~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~ 178 (317)
...+.+|+||-+..+....... .+...+..+.+.+++..|..+.
T Consensus 112 ~~~~~lvVIDsis~l~~~~~~~-~~~~~~~~~~l~~~~~~L~~~a 155 (226)
T cd01393 112 SGRVDLVVVDSVAALFRKEFIG-RGMLAERARLLSQALRKLLRLA 155 (226)
T ss_pred cCCeeEEEEcCcchhhhhhhcC-CchHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999887543111 1111223344555555555443
No 299
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=96.18 E-value=0.016 Score=54.48 Aligned_cols=102 Identities=34% Similarity=0.447 Sum_probs=62.5
Q ss_pred hHHHhhhcCCCchh-hhhhcC-----CceEEEEechhhhhh-----hcCCch--HHHHHHHHHHHhhCCceEeecccccc
Q psy7780 82 SELIQKYLGDGPKL-AVANQT-----SATFLRVVGSELIQK-----YLGDGP--KLVRELFRVAEEHAPSIVFIDEIDAV 148 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~-aiA~~~-----~~~~~~v~~s~l~~~-----~~g~~~--~~l~~~f~~a~~~~P~Ii~iDEiD~l 148 (317)
|.|++|-.||||-+ |-|-++ ..+|+-++|..+-.. .+|..+ .--.-+|+.|... -+|+|||..+
T Consensus 229 PLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~~gk~GffE~AngG---TVlLDeIgEm 305 (511)
T COG3283 229 PLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDEGKKGFFEQANGG---TVLLDEIGEM 305 (511)
T ss_pred CeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCCCCccchhhhccCC---eEEeehhhhc
Confidence 89999999999999 333222 579999999765432 222222 2334577777654 7999999766
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 149 GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 149 ~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
. ..++.-+..||+ ||.-.+..... .+ .-+|.||+||..
T Consensus 306 S-----------p~lQaKLLRFL~--DGtFRRVGee~--Ev---------~vdVRVIcatq~ 343 (511)
T COG3283 306 S-----------PRLQAKLLRFLN--DGTFRRVGEDH--EV---------HVDVRVICATQV 343 (511)
T ss_pred C-----------HHHHHHHHHHhc--CCceeecCCcc--eE---------EEEEEEEecccc
Confidence 3 345666666765 33222111100 00 036889999965
No 300
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.16 E-value=0.013 Score=51.14 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhhCCceEeecccc
Q psy7780 123 KLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 123 ~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
+.++++++.+....|.++++||.-
T Consensus 92 ~~~~~iL~~~~~~~p~llllDEp~ 115 (199)
T cd03283 92 RRLKEIVEKAKKGEPVLFLLDEIF 115 (199)
T ss_pred HHHHHHHHhccCCCCeEEEEeccc
Confidence 456777777665578999999964
No 301
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.13 E-value=0.006 Score=49.53 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=25.2
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLG 119 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g 119 (317)
+++.|+||+|||+ .++..++ ...++.-.+.....+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~~~~~ 39 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRRRLAG 39 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHHHHcc
Confidence 4678999999999 7788888 445666566554433
No 302
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.11 E-value=0.0042 Score=59.31 Aligned_cols=109 Identities=19% Similarity=0.212 Sum_probs=57.1
Q ss_pred echhhHHHhhhcCCCchh---hhhhc----CC-ceEEEEechh-------hhh---hhcC------CchHHHHHHHHHHH
Q psy7780 78 RVVGSELIQKYLGDGPKL---AVANQ----TS-ATFLRVVGSE-------LIQ---KYLG------DGPKLVRELFRVAE 133 (317)
Q Consensus 78 ~i~g~~Ll~G~pGtGKT~---aiA~~----~~-~~~~~v~~s~-------l~~---~~~g------~~~~~l~~~f~~a~ 133 (317)
+-++.++|.||+|+|||| .+|.. .| ..+..+..-. -+. +..| .....+...+...
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l- 213 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL- 213 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-
Confidence 335578899999999999 44432 23 2332332211 111 1111 1122333333322
Q ss_pred hhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC
Q psy7780 134 EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET 213 (317)
Q Consensus 134 ~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~ 213 (317)
....+|+||....... ...+.+.+..+.+..... ..++|+.+|+..+.
T Consensus 214 -~~~DlVLIDTaG~~~~-------------d~~l~e~La~L~~~~~~~------------------~~lLVLsAts~~~~ 261 (374)
T PRK14722 214 -RNKHMVLIDTIGMSQR-------------DRTVSDQIAMLHGADTPV------------------QRLLLLNATSHGDT 261 (374)
T ss_pred -cCCCEEEEcCCCCCcc-------------cHHHHHHHHHHhccCCCC------------------eEEEEecCccChHH
Confidence 3347999998753211 123445555554433210 45788888888888
Q ss_pred CCcccc
Q psy7780 214 LDPALI 219 (317)
Q Consensus 214 Ld~al~ 219 (317)
+...+.
T Consensus 262 l~evi~ 267 (374)
T PRK14722 262 LNEVVQ 267 (374)
T ss_pred HHHHHH
Confidence 876654
No 303
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.10 E-value=0.0021 Score=54.56 Aligned_cols=44 Identities=23% Similarity=0.398 Sum_probs=32.8
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHH
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRV 131 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~ 131 (317)
+.|.|++|+|||| ++|+.++.+|+..+ .++.+..| ..+.++|+.
T Consensus 5 IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D--~~Ie~~~g---~sI~eIF~~ 51 (172)
T COG0703 5 IVLIGFMGAGKSTIGRALAKALNLPFIDTD--QEIEKRTG---MSIAEIFEE 51 (172)
T ss_pred EEEEcCCCCCHhHHHHHHHHHcCCCcccch--HHHHHHHC---cCHHHHHHH
Confidence 4578999999999 99999999999875 34554444 345555653
No 304
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.09 E-value=0.021 Score=51.62 Aligned_cols=70 Identities=13% Similarity=0.292 Sum_probs=39.7
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc-----e-EEEEec------hhhhhhh--------cCCch-H---HHHHHHHHHH-
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA-----T-FLRVVG------SELIQKY--------LGDGP-K---LVRELFRVAE- 133 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~-----~-~~~v~~------s~l~~~~--------~g~~~-~---~l~~~f~~a~- 133 (317)
-.++.|++|||||+ .+++.... . |+.+.. .++.... .++.. . ....+.+.|.
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~ 97 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKR 97 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 35788999999999 77766643 2 334222 1222221 22221 1 2224444443
Q ss_pred ---hhCCceEeeccccccccc
Q psy7780 134 ---EHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 134 ---~~~P~Ii~iDEiD~l~~~ 151 (317)
...+.++|+||+..+...
T Consensus 98 ~~~~G~~vll~iDei~r~a~a 118 (249)
T cd01128 98 LVEHGKDVVILLDSITRLARA 118 (249)
T ss_pred HHHCCCCEEEEEECHHHhhhh
Confidence 234679999999998643
No 305
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.09 E-value=0.0047 Score=53.69 Aligned_cols=67 Identities=12% Similarity=0.207 Sum_probs=36.4
Q ss_pred HHHhhhcCCCchh---h---hhhcCCceEEEEechhhh----hhhcCCchHHHHHHHHHHHh---------hCCceEeec
Q psy7780 83 ELIQKYLGDGPKL---A---VANQTSATFLRVVGSELI----QKYLGDGPKLVRELFRVAEE---------HAPSIVFID 143 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---a---iA~~~~~~~~~v~~s~l~----~~~~g~~~~~l~~~f~~a~~---------~~P~Ii~iD 143 (317)
.++.|+||||||+ . ...+.+..++.+..+.-. ....|.....|..++..... ....+|++|
T Consensus 21 ~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVD 100 (196)
T PF13604_consen 21 SVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIVD 100 (196)
T ss_dssp EEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEES
T ss_pred EEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEEEe
Confidence 4578999999999 2 233346777777665321 22223333444444332211 224799999
Q ss_pred cccccc
Q psy7780 144 EIDAVG 149 (317)
Q Consensus 144 EiD~l~ 149 (317)
|+--+.
T Consensus 101 Easmv~ 106 (196)
T PF13604_consen 101 EASMVD 106 (196)
T ss_dssp SGGG-B
T ss_pred cccccC
Confidence 987663
No 306
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.09 E-value=0.12 Score=50.10 Aligned_cols=119 Identities=15% Similarity=0.094 Sum_probs=62.8
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGG 159 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~ 159 (317)
.+++||-+||||+ .+.....-.+++++..++...... -......+..+.....+.||||||..+-.
T Consensus 40 ~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~--l~d~~~~~~~~~~~~~~yifLDEIq~v~~--------- 108 (398)
T COG1373 40 ILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIE--LLDLLRAYIELKEREKSYIFLDEIQNVPD--------- 108 (398)
T ss_pred EEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhh--HHHHHHHHHHhhccCCceEEEecccCchh---------
Confidence 6799999999999 444444333666665554432211 11222222222222347999999987621
Q ss_pred hhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHH
Q psy7780 160 EREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKR 239 (317)
Q Consensus 160 ~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~ 239 (317)
-.+.+..+.+. .. .+|++.+++...-....+-.=|||. ..+.+.+.+..+..
T Consensus 109 ---W~~~lk~l~d~---~~---------------------~~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl 160 (398)
T COG1373 109 ---WERALKYLYDR---GN---------------------LDVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFL 160 (398)
T ss_pred ---HHHHHHHHHcc---cc---------------------ceEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHH
Confidence 23444444432 10 1233333333222233333446796 47777777888875
Q ss_pred H
Q psy7780 240 R 240 (317)
Q Consensus 240 ~ 240 (317)
.
T Consensus 161 ~ 161 (398)
T COG1373 161 K 161 (398)
T ss_pred h
Confidence 4
No 307
>PHA00350 putative assembly protein
Probab=96.09 E-value=0.004 Score=59.83 Aligned_cols=21 Identities=19% Similarity=0.343 Sum_probs=17.0
Q ss_pred EEEEcCCCCCCCccccCCCccee
Q psy7780 204 VIMATNRIETLDPALIRPGRIDR 226 (317)
Q Consensus 204 vI~tTN~~~~Ld~al~rpgRf~~ 226 (317)
+|.+|-.+..||..++. +++.
T Consensus 138 IiliTQ~~~~Id~~iR~--lvE~ 158 (399)
T PHA00350 138 IILLTPNIRKIHSDIRA--MIEM 158 (399)
T ss_pred EEEEeCCHHHhhHHHHH--hhhh
Confidence 88889889999988876 6654
No 308
>KOG3928|consensus
Probab=96.06 E-value=0.051 Score=51.95 Aligned_cols=50 Identities=12% Similarity=0.131 Sum_probs=35.4
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCC----cCCCHHHHHHhCCCCCHHHHHHHHH
Q psy7780 227 KIEFPLPDEKTKRRIFNIHTSRMTLA----EDVNLQELIMAKDDLSGADIKAICT 277 (317)
Q Consensus 227 ~I~~~~P~~~~r~~Il~~~l~~~~~~----~~~~~~~ia~~t~g~s~~dl~~l~~ 277 (317)
.|+++.++.++-..++..|+++.-+. .+..+.++--.+ +.+|+.++.+|.
T Consensus 405 pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lca 458 (461)
T KOG3928|consen 405 PIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLCA 458 (461)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHHH
Confidence 48888999999999999887653222 233455554444 678988888875
No 309
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.04 E-value=0.0071 Score=50.68 Aligned_cols=35 Identities=20% Similarity=0.414 Sum_probs=26.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLG 119 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g 119 (317)
+++.|+||||||+ ++|+.++.+|+.. ..+.....|
T Consensus 7 i~l~G~~GsGKstla~~La~~l~~~~~d~--d~~~~~~~g 44 (175)
T PRK00131 7 IVLIGFMGAGKSTIGRLLAKRLGYDFIDT--DHLIEARAG 44 (175)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEC--hHHHHHHcC
Confidence 5689999999999 8999999988864 344444444
No 310
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.03 E-value=0.0099 Score=61.68 Aligned_cols=70 Identities=17% Similarity=0.085 Sum_probs=41.3
Q ss_pred hHHHhhhcCCCchh------hhhhcCCceEEEEechhhhh----hh------------cCCchHHHHHHHHHHHhhCCce
Q psy7780 82 SELIQKYLGDGPKL------AVANQTSATFLRVVGSELIQ----KY------------LGDGPKLVRELFRVAEEHAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~------aiA~~~~~~~~~v~~s~l~~----~~------------~g~~~~~l~~~f~~a~~~~P~I 139 (317)
..+++|+||||||+ +-+...|-..++++..+-+. .. ....+..+..+-...++..+.+
T Consensus 62 iteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~~L 141 (790)
T PRK09519 62 VIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDI 141 (790)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCCeE
Confidence 46789999999999 22224455666665443111 00 1111333333333345567899
Q ss_pred Eeeccccccccc
Q psy7780 140 VFIDEIDAVGTK 151 (317)
Q Consensus 140 i~iDEiD~l~~~ 151 (317)
|+||-+.++.+.
T Consensus 142 VVIDSI~aL~~r 153 (790)
T PRK09519 142 VVIDSVAALVPR 153 (790)
T ss_pred EEEcchhhhcch
Confidence 999999999863
No 311
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.00 E-value=0.027 Score=49.80 Aligned_cols=26 Identities=31% Similarity=0.485 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhCCceEeecccccc
Q psy7780 123 KLVRELFRVAEEHAPSIVFIDEIDAV 148 (317)
Q Consensus 123 ~~l~~~f~~a~~~~P~Ii~iDEiD~l 148 (317)
..+..+-+.++...|.+++||-+..+
T Consensus 102 ~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 102 ELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp HHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 34455555667778899999999999
No 312
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=95.98 E-value=0.0093 Score=52.00 Aligned_cols=110 Identities=18% Similarity=0.238 Sum_probs=57.6
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGG 159 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~ 159 (317)
.+|.|.-|+|||+ .++.+ ++.-+... ... ...+. ....+ -|+.+||++.+..+.
T Consensus 55 lvl~G~QG~GKStf~~~L~~~----~~~d~~~~-----~~~-kd~~~----~l~~~--~iveldEl~~~~k~~------- 111 (198)
T PF05272_consen 55 LVLVGKQGIGKSTFFRKLGPE----YFSDSIND-----FDD-KDFLE----QLQGK--WIVELDELDGLSKKD------- 111 (198)
T ss_pred eeEecCCcccHHHHHHHHhHH----hccCcccc-----CCC-cHHHH----HHHHh--HheeHHHHhhcchhh-------
Confidence 6789999999999 66544 22111111 011 11111 12222 489999999875221
Q ss_pred hhHHHHHHHHHHHH-hcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCC-CccccCCCcceeEEEeCC
Q psy7780 160 EREIQRTMLELLNQ-LDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETL-DPALIRPGRIDRKIEFPL 232 (317)
Q Consensus 160 ~~~~~~~l~~ll~~-ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~L-d~al~rpgRf~~~I~~~~ 232 (317)
...+..++.. .+.+... +.-.....|...++|+|||..+-| |+.=-| || ..|.++.
T Consensus 112 ----~~~lK~~iT~~~~~~R~p----------Y~~~~~~~~R~~~figTtN~~~~L~D~TGnR--Rf-~~v~v~~ 169 (198)
T PF05272_consen 112 ----VEALKSFITRRTDTYRPP----------YGRDPEEFPRRAVFIGTTNDDDFLKDPTGNR--RF-WPVEVSK 169 (198)
T ss_pred ----HHHHHHHhcccceeeecC----------CcCcceeeceeEEEEeccCCcceeeCCCCCe--EE-EEEEEcC
Confidence 1233334332 1111110 111223345678899999998865 445667 87 3555554
No 313
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.97 E-value=0.0042 Score=58.82 Aligned_cols=66 Identities=18% Similarity=0.313 Sum_probs=42.2
Q ss_pred hhHHHhhhcCCCchh---hhhhcCC----ceEEEEe-chhhh---------hhhcCCchHHHHHHHHHHHhhCCceEeec
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTS----ATFLRVV-GSELI---------QKYLGDGPKLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~----~~~~~v~-~s~l~---------~~~~g~~~~~l~~~f~~a~~~~P~Ii~iD 143 (317)
|-+++.||+|+|||| ++.+++. ..++.+. ..++. ...+|.......+.+..+-...|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 567899999999999 5555443 3344432 11221 11234333346667777888899999999
Q ss_pred ccc
Q psy7780 144 EID 146 (317)
Q Consensus 144 EiD 146 (317)
|+-
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 983
No 314
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.94 E-value=0.046 Score=55.90 Aligned_cols=103 Identities=21% Similarity=0.288 Sum_probs=69.9
Q ss_pred CCCCeEEEEEcCCC--CCCCccccCCCcce---eEEEeCC--C-CHHHHHHHHHHHhcCCCC---CcCCC---HHHHHHh
Q psy7780 198 LPGDVKVIMATNRI--ETLDPALIRPGRID---RKIEFPL--P-DEKTKRRIFNIHTSRMTL---AEDVN---LQELIMA 263 (317)
Q Consensus 198 ~~~~v~vI~tTN~~--~~Ld~al~rpgRf~---~~I~~~~--P-~~~~r~~Il~~~l~~~~~---~~~~~---~~~ia~~ 263 (317)
.|.++.||+++|+. ..+||+|+. ||. ..++|.. + +.+.+..+++...+.... ....+ +..+.+.
T Consensus 274 ip~dvrvI~a~~~~ll~~~dpdL~~--rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~ 351 (637)
T PRK13765 274 VPCDFIMVAAGNLDALENMHPALRS--RIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIRE 351 (637)
T ss_pred eeeeeEEEEecCcCHHHhhhHHHHH--HhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHH
Confidence 44678999999984 567999998 986 6676663 2 456677777644432211 11222 2333322
Q ss_pred ---CCC------CCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHH
Q psy7780 264 ---KDD------LSGADIKAICTEAGLMALRERRMKVTNEDFKKSKES 302 (317)
Q Consensus 264 ---t~g------~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~ 302 (317)
..| +..++|..++++|...|..+++..++.+|+.+|+.+
T Consensus 352 ~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 352 AKRRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred HHHHhCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 111 447899999999999999999999999999888753
No 315
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.93 E-value=0.0084 Score=53.19 Aligned_cols=46 Identities=24% Similarity=0.344 Sum_probs=24.5
Q ss_pred HHhh-CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCC
Q psy7780 132 AEEH-APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFD 178 (317)
Q Consensus 132 a~~~-~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~ 178 (317)
..+. .+.+|+||-+..+....... .+...+..+.+.+++..+..+.
T Consensus 110 l~~~~~~~liVIDSis~~~~~~~~~-~~~~~~r~~~l~~~~~~L~~la 156 (235)
T cd01123 110 LIESSRIKLVIVDSVTALFRAEFDG-RGELAERQQHLAKLLRTLKRLA 156 (235)
T ss_pred HhhcCCeeEEEEeCcHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHH
Confidence 3445 78999999999886421111 1111223344555555554443
No 316
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.91 E-value=0.018 Score=52.28 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=15.4
Q ss_pred HHhhCCceEeeccccccccc
Q psy7780 132 AEEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 132 a~~~~P~Ii~iDEiD~l~~~ 151 (317)
++.+.|.+|+||.+..+...
T Consensus 136 ~~~~~~~~vvID~l~~l~~~ 155 (271)
T cd01122 136 AVSHGIQHIIIDNLSIMVSD 155 (271)
T ss_pred HhcCCceEEEECCHHHHhcc
Confidence 34567899999999988644
No 317
>PRK13695 putative NTPase; Provisional
Probab=95.90 E-value=0.037 Score=46.82 Aligned_cols=12 Identities=25% Similarity=0.047 Sum_probs=11.0
Q ss_pred HHhhhcCCCchh
Q psy7780 84 LIQKYLGDGPKL 95 (317)
Q Consensus 84 Ll~G~pGtGKT~ 95 (317)
++.|+||+|||+
T Consensus 4 ~ltG~~G~GKTT 15 (174)
T PRK13695 4 GITGPPGVGKTT 15 (174)
T ss_pred EEECCCCCCHHH
Confidence 578999999999
No 318
>PRK04040 adenylate kinase; Provisional
Probab=95.90 E-value=0.055 Score=46.74 Aligned_cols=24 Identities=8% Similarity=0.110 Sum_probs=19.2
Q ss_pred HHHhhhcCCCchh---hhhhcC--CceEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQT--SATFL 106 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~--~~~~~ 106 (317)
+.++|+||||||+ .+++.+ +..++
T Consensus 5 i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 5 VVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 3578999999999 788888 55554
No 319
>PHA00012 I assembly protein
Probab=95.88 E-value=0.014 Score=54.41 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=37.6
Q ss_pred CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCc
Q psy7780 137 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDP 216 (317)
Q Consensus 137 P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~ 216 (317)
-+++++||+...++.|....... ....+++...-. .++-+|.+|..+..+|.
T Consensus 82 gsLlVlDEaq~~fp~R~~~sk~p-----~~vie~l~~hRh-----------------------~G~DvilITQ~ps~VDs 133 (361)
T PHA00012 82 NGLLVLDECGTWFNSRSWNDKER-----QPVIDWFLHARK-----------------------LGWDIIFIIQDISIMDK 133 (361)
T ss_pred CcEEEEECcccccCCCCcCcCCc-----HHHHHHHHHhcc-----------------------CCceEEEEcCCHHHHhH
Confidence 47999999999999985433221 223344444322 34558999999999998
Q ss_pred ccc
Q psy7780 217 ALI 219 (317)
Q Consensus 217 al~ 219 (317)
.++
T Consensus 134 ~IR 136 (361)
T PHA00012 134 QAR 136 (361)
T ss_pred HHH
Confidence 875
No 320
>KOG2383|consensus
Probab=95.86 E-value=0.0082 Score=57.07 Aligned_cols=70 Identities=16% Similarity=0.219 Sum_probs=44.5
Q ss_pred CCeEEEEEcCC-CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCC-C--CCHH-HHHH
Q psy7780 200 GDVKVIMATNR-IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKD-D--LSGA-DIKA 274 (317)
Q Consensus 200 ~~v~vI~tTN~-~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~-g--~s~~-dl~~ 274 (317)
..|++++|+|| |+.|-..=+. +..++|- ..+|+.++.-..+++.+|+...+...+ + |.+. |...
T Consensus 223 ~GvVlvATSNR~P~dLYknGlQ-----R~~F~Pf------I~~L~~rc~vi~ldS~vDYR~~~~~~~~~~yf~~~~d~~~ 291 (467)
T KOG2383|consen 223 NGVVLVATSNRAPEDLYKNGLQ-----RENFIPF------IALLEERCKVIQLDSGVDYRRKAKSAGENYYFISETDVET 291 (467)
T ss_pred CCeEEEEeCCCChHHHhhcchh-----hhhhhhH------HHHHHHhheEEecCCccchhhccCCCCceeEecChhhHHH
Confidence 67999999999 6666654433 3444443 467788887778888888883333221 1 3333 7777
Q ss_pred HHHHHH
Q psy7780 275 ICTEAG 280 (317)
Q Consensus 275 l~~~A~ 280 (317)
++++--
T Consensus 292 ~l~~~f 297 (467)
T KOG2383|consen 292 VLKEWF 297 (467)
T ss_pred HHHHHH
Confidence 776543
No 321
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.85 E-value=0.02 Score=50.93 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=19.3
Q ss_pred hHHHhhhcCCCchh-------hhhhcCCceEEEEe
Q psy7780 82 SELIQKYLGDGPKL-------AVANQTSATFLRVV 109 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~-------aiA~~~~~~~~~v~ 109 (317)
..++.|+||+|||+ ..|...+.++++++
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s 49 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS 49 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence 36789999999998 22333366666665
No 322
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.84 E-value=0.015 Score=49.41 Aligned_cols=91 Identities=19% Similarity=0.172 Sum_probs=50.7
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhh-----------------cCCchHHHHHHHHHHHhhCCceEee
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKY-----------------LGDGPKLVRELFRVAEEHAPSIVFI 142 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~-----------------~g~~~~~l~~~f~~a~~~~P~Ii~i 142 (317)
+++.|+||+|||+ .++.+.+.+++++......+.. .-|.+..+..+++.. ...+.+|+|
T Consensus 4 ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~~VlI 82 (170)
T PRK05800 4 ILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGRCVLV 82 (170)
T ss_pred EEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCCEEEe
Confidence 4688999999999 7777777777777654432210 001122344444321 123568999
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHhcC
Q psy7780 143 DEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDG 176 (317)
Q Consensus 143 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~ 176 (317)
|-+..+..+.-..+. .......+.+++..+..
T Consensus 83 D~Lt~~~~n~l~~~~--~~~~~~~l~~li~~L~~ 114 (170)
T PRK05800 83 DCLTTWVTNLLFEEG--EEAIAAEIDALLAALQQ 114 (170)
T ss_pred hhHHHHHHHHhcccc--hHHHHHHHHHHHHHHHc
Confidence 999888654321111 12233445556666554
No 323
>PRK14532 adenylate kinase; Provisional
Probab=95.81 E-value=0.0041 Score=53.36 Aligned_cols=33 Identities=3% Similarity=0.059 Sum_probs=25.5
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKY 117 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~ 117 (317)
+++.|+||+|||| .+|+..|+.+ ++..+++.+.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~lr~~ 38 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDMLRAA 38 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHHHHH
Confidence 4678999999999 8899888655 5566666654
No 324
>PRK05973 replicative DNA helicase; Provisional
Probab=95.80 E-value=0.038 Score=49.56 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=12.8
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
.+++.|+||+|||+
T Consensus 66 l~LIaG~PG~GKT~ 79 (237)
T PRK05973 66 LVLLGARPGHGKTL 79 (237)
T ss_pred EEEEEeCCCCCHHH
Confidence 57899999999998
No 325
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.79 E-value=0.062 Score=51.73 Aligned_cols=47 Identities=15% Similarity=0.163 Sum_probs=29.4
Q ss_pred EEEeeeeecCCcEEEecc-----cCCeeeeeeccccCccCcCcccEEEEecc
Q psy7780 3 VGTLEEIIDDNHAIVSTS-----VGSEHYVSILSFVDKDQLEPGCSVLLNHK 49 (317)
Q Consensus 3 ~~~~~~~l~~~~~~v~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 49 (317)
+.-+.|+++++.....+. +++.-+.--.+.+.+..|+.||+|.-.-+
T Consensus 51 ~~g~le~~~~g~gflr~~~~~~~~~~~d~yvs~~~i~~~~lr~gd~v~g~~R 102 (415)
T TIGR00767 51 GEGVLEILPDGFGFLRSPDSSYLPGPDDIYVSPSQIRRFNLRTGDTIEGQIR 102 (415)
T ss_pred EEEEEEEcCCCCeEEeCCCcCCCCCCCCeeeCHHHHHhcCCCCCCEEEEEEe
Confidence 345677887777666542 23332222356677889999999975433
No 326
>PRK00625 shikimate kinase; Provisional
Probab=95.76 E-value=0.0051 Score=52.47 Aligned_cols=27 Identities=19% Similarity=0.085 Sum_probs=23.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEe
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
+++.|+||+|||+ .+|+.++++|+.++
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4678999999999 99999999998775
No 327
>PHA02624 large T antigen; Provisional
Probab=95.71 E-value=0.001 Score=66.61 Aligned_cols=124 Identities=15% Similarity=0.136 Sum_probs=67.2
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGG 159 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~ 159 (317)
++|+||||||||+ ++++.++-..+.++++.=.. -|...-...--+++||++-.-+-...+-.+|.
T Consensus 434 il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks------------~FwL~pl~D~~~~l~dD~t~~~~~~~~Lp~G~ 501 (647)
T PHA02624 434 WLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKL------------NFELGCAIDQFMVVFEDVKGQPADNKDLPSGQ 501 (647)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchh------------HHHhhhhhhceEEEeeeccccccccccCCccc
Confidence 6899999999999 99999965666687543111 12221111114889998864433211111111
Q ss_pred hhHHHHHHHHHHHHhcCC-CcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCC
Q psy7780 160 EREIQRTMLELLNQLDGF-DSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 232 (317)
Q Consensus 160 ~~~~~~~l~~ll~~ld~~-~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~ 232 (317)
. -.-+..+-+.+||- .-+...+.-. . ... .---+|.|||. ..||..+.- ||..++.|..
T Consensus 502 ~---~dNl~~lRn~LDG~V~v~ld~KH~n--~---~q~---~~PPlliT~Ne-y~iP~T~~~--Rf~~~~~F~~ 561 (647)
T PHA02624 502 G---MNNLDNLRDYLDGSVPVNLEKKHLN--K---RSQ---IFPPGIVTMNE-YLIPQTVKA--RFAKVLDFKP 561 (647)
T ss_pred c---cchhhHHHhhcCCCCccccchhccC--c---hhc---cCCCeEEeecC-cccchhHHH--HHHHhccccc
Confidence 1 01123455666775 2111111000 0 000 00126777774 678999998 9999998854
No 328
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.66 E-value=0.022 Score=47.85 Aligned_cols=14 Identities=21% Similarity=0.392 Sum_probs=12.5
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.|++|+|||+
T Consensus 26 ~~~i~~~~GsGKT~ 39 (201)
T smart00487 26 DVILAAPTGSGKTL 39 (201)
T ss_pred cEEEECCCCCchhH
Confidence 56789999999998
No 329
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.65 E-value=0.0037 Score=53.24 Aligned_cols=33 Identities=9% Similarity=0.144 Sum_probs=25.6
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKY 117 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~ 117 (317)
+++.|+||+|||+ .+|+.+++ ..++.++++.+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~lr~~ 37 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLLRAE 37 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHHHHH
Confidence 3578999999999 88998875 566666766544
No 330
>PRK03839 putative kinase; Provisional
Probab=95.65 E-value=0.003 Score=53.87 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=23.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEe
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
+++.|+||+|||| .+|+.++++|+.++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4578999999999 99999999887754
No 331
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.64 E-value=0.061 Score=57.12 Aligned_cols=97 Identities=16% Similarity=0.258 Sum_probs=52.0
Q ss_pred hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCC
Q psy7780 135 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETL 214 (317)
Q Consensus 135 ~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~L 214 (317)
..|.+|+|||++.+-.. .+...+..++..+. .++.+|.++...-.+
T Consensus 120 ~~~~~lvlDD~h~~~~~----------~~~~~l~~l~~~~~------------------------~~~~lv~~sR~~~~~ 165 (903)
T PRK04841 120 HQPLYLVIDDYHLITNP----------EIHEAMRFFLRHQP------------------------ENLTLVVLSRNLPPL 165 (903)
T ss_pred CCCEEEEEeCcCcCCCh----------HHHHHHHHHHHhCC------------------------CCeEEEEEeCCCCCC
Confidence 56899999999987311 23345555554421 445555566442122
Q ss_pred Cc-cccCCCcceeEEEeC--CCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCC
Q psy7780 215 DP-ALIRPGRIDRKIEFP--LPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLS 268 (317)
Q Consensus 215 d~-al~rpgRf~~~I~~~--~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s 268 (317)
+- .+..-|.+ ..|... ..+.++-.+++...+.. .+ +..+...+.+.|+|..
T Consensus 166 ~~~~l~~~~~~-~~l~~~~l~f~~~e~~~ll~~~~~~-~~-~~~~~~~l~~~t~Gwp 219 (903)
T PRK04841 166 GIANLRVRDQL-LEIGSQQLAFDHQEAQQFFDQRLSS-PI-EAAESSRLCDDVEGWA 219 (903)
T ss_pred chHhHHhcCcc-eecCHHhCCCCHHHHHHHHHhccCC-CC-CHHHHHHHHHHhCChH
Confidence 21 11111121 123333 56888888888766542 22 2334677888888853
No 332
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.64 E-value=0.0076 Score=57.62 Aligned_cols=66 Identities=24% Similarity=0.308 Sum_probs=43.1
Q ss_pred hhHHHhhhcCCCchh---hhhhcC-----CceEEEEech-hhh-----------hhhcCCchHHHHHHHHHHHhhCCceE
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT-----SATFLRVVGS-ELI-----------QKYLGDGPKLVRELFRVAEEHAPSIV 140 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s-~l~-----------~~~~g~~~~~l~~~f~~a~~~~P~Ii 140 (317)
|.+|+.||+|+|||| +++++. +...+.+.-+ ++. +..+|............|.++.|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 467899999999999 655544 2345555322 221 12233333345667777888899999
Q ss_pred eecccc
Q psy7780 141 FIDEID 146 (317)
Q Consensus 141 ~iDEiD 146 (317)
++.|+-
T Consensus 230 ~vGEiR 235 (372)
T TIGR02525 230 GVGEIR 235 (372)
T ss_pred eeCCCC
Confidence 999985
No 333
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.63 E-value=0.019 Score=48.65 Aligned_cols=60 Identities=23% Similarity=0.429 Sum_probs=36.6
Q ss_pred hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCC
Q psy7780 135 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETL 214 (317)
Q Consensus 135 ~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~L 214 (317)
..|.|+++||+-+-+.. .....+..++..+..+ .+|.+++.|..++.
T Consensus 150 ~~P~ILLLDE~TsALD~------~nkr~ie~mi~~~v~~--------------------------q~vAv~WiTHd~dq- 196 (223)
T COG4619 150 FMPKILLLDEITSALDE------SNKRNIEEMIHRYVRE--------------------------QNVAVLWITHDKDQ- 196 (223)
T ss_pred cCCceEEecCchhhcCh------hhHHHHHHHHHHHhhh--------------------------hceEEEEEecChHH-
Confidence 44899999998765432 1223344444444432 67889999987653
Q ss_pred CccccCCCcceeEEEeCC
Q psy7780 215 DPALIRPGRIDRKIEFPL 232 (317)
Q Consensus 215 d~al~rpgRf~~~I~~~~ 232 (317)
++ | -++++|.+-+
T Consensus 197 --a~-r--ha~k~itl~~ 209 (223)
T COG4619 197 --AI-R--HADKVITLQP 209 (223)
T ss_pred --Hh-h--hhheEEEecc
Confidence 22 3 5667777654
No 334
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.61 E-value=0.07 Score=46.48 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=23.1
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELI 114 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~ 114 (317)
+++.|+||+|||+ .+|.+++..+ +..++++
T Consensus 6 i~i~G~~G~GKst~a~~l~~~~~~~~--~~~~D~~ 38 (197)
T PRK12339 6 HFIGGIPGVGKTSISGYIARHRAIDI--VLSGDYL 38 (197)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeE--EehhHHH
Confidence 4688999999999 7999988755 4555543
No 335
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.58 E-value=0.046 Score=53.39 Aligned_cols=49 Identities=14% Similarity=0.074 Sum_probs=30.5
Q ss_pred CCHHHHHHhCCCCCHHHHHHHHHHHHHH---------HHHhcCCCcCHHHHHHHHHHHHh
Q psy7780 255 VNLQELIMAKDDLSGADIKAICTEAGLM---------ALRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 255 ~~~~~ia~~t~g~s~~dl~~l~~~A~~~---------a~~~~~~~it~~d~~~al~~v~~ 305 (317)
.+.+.++.+.-| -+|+..|++.|... +-+-.....+.+||.+-++.+.+
T Consensus 277 f~~~~~~~~ilg--mgd~~~l~e~~~~~~~~~~~~~~~~~~~~~~f~l~d~~~q~~~~~k 334 (437)
T PRK00771 277 FDPDRFISRLLG--MGDLESLLEKVEEALDEEEEEKDVEKMMKGKFTLKDMYKQLEAMNK 334 (437)
T ss_pred CCHHHHHHHHhC--CCChHHHHHHHHHhhhHHHHHHHHHHHHcCCcCHHHHHHHHHHHHh
Confidence 345666766544 35777777755432 11112457899999998888764
No 336
>KOG2543|consensus
Probab=95.58 E-value=0.055 Score=51.29 Aligned_cols=31 Identities=13% Similarity=0.025 Sum_probs=26.5
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSEL 113 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l 113 (317)
+.+||..|||||. ++-++++.+.+.++|-+.
T Consensus 33 ~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ec 66 (438)
T KOG2543|consen 33 VHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVEC 66 (438)
T ss_pred EEEeccCCCchhHHHHHHHhhcCCcceeeehHHh
Confidence 3689999999999 888888999999888654
No 337
>PRK06762 hypothetical protein; Provisional
Probab=95.56 E-value=0.013 Score=49.04 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=25.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~ 115 (317)
+++.|+||+|||| .+++.++..++.++.-.+..
T Consensus 5 i~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~ 40 (166)
T PRK06762 5 IIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRR 40 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHH
Confidence 4578999999999 88888865666666655554
No 338
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.56 E-value=0.0052 Score=51.42 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=21.2
Q ss_pred HhhhcCCCchh---hhhhcCCceEEE
Q psy7780 85 IQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 85 l~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
+.||||||||| -+|+++|.++++
T Consensus 5 IsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 5 ISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred eccCCCCChhHHHHHHHHHhCCceee
Confidence 57999999999 999999999876
No 339
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.52 E-value=0.042 Score=51.36 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=24.7
Q ss_pred HhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCC
Q psy7780 133 EEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFD 178 (317)
Q Consensus 133 ~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~ 178 (317)
.+..+.+|+||-+-+++...... .+.-.+.++.+.+++..|..+.
T Consensus 188 ~~~~~~LvVIDSisal~r~~~~~-~g~~~~r~~~l~~~~~~L~~la 232 (313)
T TIGR02238 188 SEEPFRLLIVDSIMALFRVDFSG-RGELSERQQKLAQMLSRLNKIS 232 (313)
T ss_pred hccCCCEEEEEcchHhhhhhccC-ccchHHHHHHHHHHHHHHHHHH
Confidence 34568899999999887543211 1122222334555555544443
No 340
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.48 E-value=0.018 Score=54.71 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=15.1
Q ss_pred HHHhhhcCCCchh---hhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~ 101 (317)
.++.|.||||||. .+|.++
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHh
Confidence 3678999999999 566655
No 341
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.47 E-value=0.022 Score=50.64 Aligned_cols=68 Identities=12% Similarity=0.238 Sum_probs=39.8
Q ss_pred hHHHhhhcCCCchh---hhhh---cCCceEEEEechh----hhh----------hhcC-------------------Cch
Q psy7780 82 SELIQKYLGDGPKL---AVAN---QTSATFLRVVGSE----LIQ----------KYLG-------------------DGP 122 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~---~~~~~~~~v~~s~----l~~----------~~~g-------------------~~~ 122 (317)
..+++|+||+|||+ +++. ..+...++++..+ +.. ++.. ...
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~ 106 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWNSTLAN 106 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccCcchHH
Confidence 46789999999998 3322 2355666665422 111 1100 012
Q ss_pred HHHHHHHHHHHhhCCceEeeccccccc
Q psy7780 123 KLVRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 123 ~~l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
..+..+-+...+..|.+++||++-.+.
T Consensus 107 ~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 107 KLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred HHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 233444444555678999999999774
No 342
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.45 E-value=0.0082 Score=49.37 Aligned_cols=36 Identities=22% Similarity=0.344 Sum_probs=27.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGD 120 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~ 120 (317)
+++.|+||+|||+ .+|+.++++++..+ .+.....|.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d--~~~~~~~~~ 40 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD--ELIEQRAGM 40 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEch--HHHHHHcCC
Confidence 4688999999999 89999999888654 555444443
No 343
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.38 E-value=0.023 Score=50.45 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=37.7
Q ss_pred HHHhhhcCCCchh-------hhhhc----CCceEEEEech-hhhhhhcC-------------CchHHHHHHHHHHHhhCC
Q psy7780 83 ELIQKYLGDGPKL-------AVANQ----TSATFLRVVGS-ELIQKYLG-------------DGPKLVRELFRVAEEHAP 137 (317)
Q Consensus 83 ~Ll~G~pGtGKT~-------aiA~~----~~~~~~~v~~s-~l~~~~~g-------------~~~~~l~~~f~~a~~~~P 137 (317)
.|+-||||||||| .++.. +...+..++-+ ++..-..| .....-.-+....+.++|
T Consensus 140 tLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrsm~P 219 (308)
T COG3854 140 TLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRSMSP 219 (308)
T ss_pred eEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHhcCC
Confidence 4678999999999 33333 33444555433 33221111 111222234455688999
Q ss_pred ceEeeccccc
Q psy7780 138 SIVFIDEIDA 147 (317)
Q Consensus 138 ~Ii~iDEiD~ 147 (317)
-||++|||..
T Consensus 220 EViIvDEIGt 229 (308)
T COG3854 220 EVIIVDEIGT 229 (308)
T ss_pred cEEEEecccc
Confidence 9999999853
No 344
>KOG3347|consensus
Probab=95.33 E-value=0.0046 Score=51.07 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=23.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEe
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
+|+.|-||||||+ .+|..++..++.++
T Consensus 10 ILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 10 ILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred EEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 5789999999999 99999998877653
No 345
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.31 E-value=0.042 Score=49.92 Aligned_cols=14 Identities=21% Similarity=0.078 Sum_probs=12.8
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..+++|+||||||+
T Consensus 38 ~~lI~G~pGtGKT~ 51 (259)
T TIGR03878 38 VINITGVSDTGKSL 51 (259)
T ss_pred EEEEEcCCCCCHHH
Confidence 56899999999998
No 346
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.29 E-value=0.011 Score=46.55 Aligned_cols=16 Identities=13% Similarity=0.270 Sum_probs=12.6
Q ss_pred CCceEeeccccccccc
Q psy7780 136 APSIVFIDEIDAVGTK 151 (317)
Q Consensus 136 ~P~Ii~iDEiD~l~~~ 151 (317)
...+|+|||++.+...
T Consensus 103 ~~~~iiiDE~h~~~~~ 118 (144)
T cd00046 103 KLDLLILDEAHRLLNQ 118 (144)
T ss_pred cCCEEEEeCHHHHhhc
Confidence 4679999999988543
No 347
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.26 E-value=0.028 Score=47.17 Aligned_cols=83 Identities=12% Similarity=0.061 Sum_probs=45.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc--eEEEEechhh--------hhhhcCC-----chHHHHHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA--TFLRVVGSEL--------IQKYLGD-----GPKLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~--~~~~v~~s~l--------~~~~~g~-----~~~~l~~~f~~a~~~~P~Ii~iD 143 (317)
...+.|++|+|||+ .++..... --+.+++.++ ....++. +...-+-.+..|-...|.++++|
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~illlD 107 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLILD 107 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 35688999999999 66655421 1122322211 1111111 11233445666677789999999
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHh
Q psy7780 144 EIDAVGTKRYDSNSGGEREIQRTMLELLNQL 174 (317)
Q Consensus 144 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l 174 (317)
|--.-. +.+..+.+.+++.++
T Consensus 108 EP~~~L----------D~~~~~~l~~~l~~~ 128 (163)
T cd03216 108 EPTAAL----------TPAEVERLFKVIRRL 128 (163)
T ss_pred CCCcCC----------CHHHHHHHHHHHHHH
Confidence 964322 233445566666654
No 348
>COG1485 Predicted ATPase [General function prediction only]
Probab=95.24 E-value=0.032 Score=52.37 Aligned_cols=14 Identities=14% Similarity=0.230 Sum_probs=12.2
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
+.-++|+=|+|||+
T Consensus 67 GlYl~GgVGrGKT~ 80 (367)
T COG1485 67 GLYLWGGVGRGKTM 80 (367)
T ss_pred eEEEECCCCccHHH
Confidence 45689999999998
No 349
>PRK13947 shikimate kinase; Provisional
Probab=95.21 E-value=0.0052 Score=51.72 Aligned_cols=36 Identities=25% Similarity=0.348 Sum_probs=27.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGD 120 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~ 120 (317)
+++.|+||||||+ .+|+.++.+|+..+ .++....|.
T Consensus 4 I~l~G~~GsGKst~a~~La~~lg~~~id~d--~~~~~~~g~ 42 (171)
T PRK13947 4 IVLIGFMGTGKTTVGKRVATTLSFGFIDTD--KEIEKMTGM 42 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEECc--hhhhhhcCC
Confidence 4678999999999 99999999997754 344443443
No 350
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.16 E-value=0.087 Score=47.06 Aligned_cols=25 Identities=12% Similarity=0.104 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhhCCceEeecccccc
Q psy7780 124 LVRELFRVAEEHAPSIVFIDEIDAV 148 (317)
Q Consensus 124 ~l~~~f~~a~~~~P~Ii~iDEiD~l 148 (317)
.+..+.+.+....|.+|+||.+-.+
T Consensus 99 ~~~~l~~~~~~~~~~lvviDpl~~~ 123 (239)
T cd01125 99 EFERIIEQLLIRRIDLVVIDPLVSF 123 (239)
T ss_pred HHHHHHHHHHhcCCCEEEECChHHh
Confidence 4455555565667999999988777
No 351
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.16 E-value=0.068 Score=47.78 Aligned_cols=29 Identities=21% Similarity=0.110 Sum_probs=19.1
Q ss_pred hHHHhhhcCCCchh----hhhh--cCCceEEEEec
Q psy7780 82 SELIQKYLGDGPKL----AVAN--QTSATFLRVVG 110 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----aiA~--~~~~~~~~v~~ 110 (317)
..|++|+||+|||+ .+++ ..|-+.++++.
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 47899999999998 1222 23555555543
No 352
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.14 E-value=0.048 Score=51.04 Aligned_cols=98 Identities=15% Similarity=0.070 Sum_probs=54.9
Q ss_pred HHHhhhcCCCchh------hhhhcCCceEEEEechhhhhh----------------hcCCchHHHHHHHHHHHhhCCceE
Q psy7780 83 ELIQKYLGDGPKL------AVANQTSATFLRVVGSELIQK----------------YLGDGPKLVRELFRVAEEHAPSIV 140 (317)
Q Consensus 83 ~Ll~G~pGtGKT~------aiA~~~~~~~~~v~~s~l~~~----------------~~g~~~~~l~~~f~~a~~~~P~Ii 140 (317)
.-++||+|+|||+ +-++..+.....+++..-++. .....+..+..+-...+....++|
T Consensus 56 vEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg~~~lV 135 (322)
T PF00154_consen 56 VEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYAESLGVDLDRLLVVQPDTGEQALWIAEQLIRSGAVDLV 135 (322)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTTSESEE
T ss_pred EEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHHHhcCccccceEEecCCcHHHHHHHHHHHhhcccccEE
Confidence 4578999999998 334456777888877432221 122234444433334455556799
Q ss_pred eecccccccccccCCC---CCchhHHHHHHHHHHHHhcCCCcc
Q psy7780 141 FIDEIDAVGTKRYDSN---SGGEREIQRTMLELLNQLDGFDSR 180 (317)
Q Consensus 141 ~iDEiD~l~~~r~~~~---~~~~~~~~~~l~~ll~~ld~~~~~ 180 (317)
++|=+.++.++..-.+ +.......+.+++++..+...-+.
T Consensus 136 VvDSv~al~p~~E~e~~~~~~~~g~~Ar~ms~~lr~lt~~l~~ 178 (322)
T PF00154_consen 136 VVDSVAALVPKAELEGEIGDQQVGLQARLMSQALRKLTPLLSK 178 (322)
T ss_dssp EEE-CTT-B-HHHHTTSTSSTSSSHHHHHHHHHHHHHHHHHHT
T ss_pred EEecCcccCCHHHHhhccccccCcchHHHHHHHHHHHHHHHHh
Confidence 9999999987653221 111223456778888877765544
No 353
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.13 E-value=0.54 Score=45.54 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=30.9
Q ss_pred EEEEcCCCC---CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcC
Q psy7780 204 VIMATNRIE---TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSR 248 (317)
Q Consensus 204 vI~tTN~~~---~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~ 248 (317)
||+.|+... .|..||=. |.-+.|.+.-.+.+.-+..+..++..
T Consensus 186 VIFlT~dv~~~k~LskaLPn--~vf~tI~L~Das~~~Ak~yV~~~L~~ 231 (431)
T PF10443_consen 186 VIFLTDDVSYSKPLSKALPN--RVFKTISLSDASPESAKQYVLSQLDE 231 (431)
T ss_pred EEEECCCCchhhhHHHhCCC--CceeEEeecCCCHHHHHHHHHHHhcc
Confidence 555565443 36667754 76679999999988888888887754
No 354
>PHA02774 E1; Provisional
Probab=95.13 E-value=0.028 Score=56.32 Aligned_cols=28 Identities=11% Similarity=0.001 Sum_probs=21.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceE-EEEec
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATF-LRVVG 110 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~-~~v~~ 110 (317)
.+|+||||||||+ ++++.++-.. ..++.
T Consensus 437 iv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 437 LVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 5799999999999 8888875333 33553
No 355
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.06 E-value=0.068 Score=47.07 Aligned_cols=13 Identities=15% Similarity=0.141 Sum_probs=12.1
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++.||.|+|||+
T Consensus 32 ~~itGpNg~GKSt 44 (213)
T cd03281 32 MVITGPNSSGKSV 44 (213)
T ss_pred EEEECCCCCChHH
Confidence 6799999999998
No 356
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.01 E-value=0.075 Score=45.41 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=17.4
Q ss_pred HHHHHHHHHHh-hCCceEeeccccccccc
Q psy7780 124 LVRELFRVAEE-HAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 124 ~l~~~f~~a~~-~~P~Ii~iDEiD~l~~~ 151 (317)
.++.+.+.+.+ ..|.+|+||-+..+...
T Consensus 128 ~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 128 DLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp HHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred HHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 45566777777 67999999999999865
No 357
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=95.00 E-value=0.026 Score=62.27 Aligned_cols=138 Identities=20% Similarity=0.280 Sum_probs=85.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhh--hhhcC----CchHH---HHHHHHHHHhhCCceEeeccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELI--QKYLG----DGPKL---VRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~--~~~~g----~~~~~---l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
|+|+.||..+|||+ .+|.++|-.|++|+-.+-. +.|+| ..... -.-+.-.|-+.. --|++||+...
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA- 967 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA- 967 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC-
Confidence 99999999999999 9999999999999865432 22333 21110 011222333332 47889998643
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccc-ccCC-CCeEEEEEcCCCCC------CCccccCC
Q psy7780 150 TKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTL-IYLP-GDVKVIMATNRIET------LDPALIRP 221 (317)
Q Consensus 150 ~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~-~~~~-~~v~vI~tTN~~~~------Ld~al~rp 221 (317)
++ .+..+|+.+|+--..+ ++-.+- ...| .++.+++|.|.|-. |..|++.
T Consensus 968 pT----------DVLEaLNRLLDDNRel------------fIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRN- 1024 (4600)
T COG5271 968 PT----------DVLEALNRLLDDNREL------------FIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRN- 1024 (4600)
T ss_pred cH----------HHHHHHHHhhccccce------------ecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHh-
Confidence 22 3555666665421111 111110 2223 34667777787654 7889999
Q ss_pred CcceeEEEeCCCCHHHHHHHHHHHh
Q psy7780 222 GRIDRKIEFPLPDEKTKRRIFNIHT 246 (317)
Q Consensus 222 gRf~~~I~~~~P~~~~r~~Il~~~l 246 (317)
|| ..++|.--.+++...||+...
T Consensus 1025 -RF-lE~hFddipedEle~ILh~rc 1047 (4600)
T COG5271 1025 -RF-LEMHFDDIPEDELEEILHGRC 1047 (4600)
T ss_pred -hh-HhhhcccCcHHHHHHHHhccC
Confidence 99 478888777888888887554
No 358
>PRK14531 adenylate kinase; Provisional
Probab=94.96 E-value=0.0067 Score=52.01 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=24.5
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
+++.|+||+|||| .+|+.+|++++ ++++++.+
T Consensus 5 i~i~G~pGsGKsT~~~~la~~~g~~~i--s~gd~lr~ 39 (183)
T PRK14531 5 LLFLGPPGAGKGTQAARLCAAHGLRHL--STGDLLRS 39 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeE--ecccHHHH
Confidence 4688999999999 88999887654 45555543
No 359
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.95 E-value=0.045 Score=51.83 Aligned_cols=45 Identities=18% Similarity=0.290 Sum_probs=25.4
Q ss_pred HHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCC
Q psy7780 132 AEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGF 177 (317)
Q Consensus 132 a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~ 177 (317)
..+..+.+|+||-+-+++...... .+.-.+.++.+.+++..|..+
T Consensus 217 i~~~~~~LvVIDSital~r~~~~~-rg~l~~rq~~L~~~~~~L~~l 261 (344)
T PLN03187 217 MAEEPFRLLIVDSVIALFRVDFTG-RGELAERQQKLAQMLSRLTKI 261 (344)
T ss_pred HHhcCCCEEEEeCcHHhhhccccC-ccchHHHHHHHHHHHHHHHHH
Confidence 344568999999999887643221 122223344455555555443
No 360
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=94.91 E-value=0.0092 Score=59.63 Aligned_cols=171 Identities=17% Similarity=0.217 Sum_probs=92.8
Q ss_pred hHHHhhhcCCCchh---hhhh--cCCceEEEEechhhhh-----hhcCCchHHHHHHHHHHHhh-----CCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVAN--QTSATFLRVVGSELIQ-----KYLGDGPKLVRELFRVAEEH-----APSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~--~~~~~~~~v~~s~l~~-----~~~g~~~~~l~~~f~~a~~~-----~P~Ii~iDEiD 146 (317)
|+++.|-|||||-. ++-+ +..-+|+-|+|..+-+ .++|..+...--.+.+-.+. .--.+|+|||.
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeIg 417 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEIG 417 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHhh
Confidence 89999999999987 4333 3445899999976433 23333322211111111111 12489999998
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhc--CCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcc
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLD--GFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRI 224 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld--~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf 224 (317)
.+. -..|..|...|.+=. .+.+. . -+-+|-||+||++.= ..+.+-|||
T Consensus 418 d~p-----------~~~Qs~LLrVl~e~~v~p~g~~--------------~--~~vdirvi~ath~dl---~~lv~~g~f 467 (606)
T COG3284 418 DMP-----------LALQSRLLRVLQEGVVTPLGGT--------------R--IKVDIRVIAATHRDL---AQLVEQGRF 467 (606)
T ss_pred hch-----------HHHHHHHHHHHhhCceeccCCc--------------c--eeEEEEEEeccCcCH---HHHHHcCCc
Confidence 763 234555666665411 11111 0 124688999998732 244556666
Q ss_pred e---------eEEEeCCC-CHHHHHHHHHHHhcCCCCC-cCCCHHHHHHh----CCCCCHHHHHHHHHHHHHHH
Q psy7780 225 D---------RKIEFPLP-DEKTKRRIFNIHTSRMTLA-EDVNLQELIMA----KDDLSGADIKAICTEAGLMA 283 (317)
Q Consensus 225 ~---------~~I~~~~P-~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~----t~g~s~~dl~~l~~~A~~~a 283 (317)
. ..|++|+. .+.++...+..++.+.... -..+-+.++.. =.| +-+++.++++.++..+
T Consensus 468 redLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPG-Nirel~~v~~~~~~l~ 540 (606)
T COG3284 468 REDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPG-NIRELDNVIERLAALS 540 (606)
T ss_pred hHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcC
Confidence 4 45666655 4455666666555443221 12222223222 234 5678888888776544
No 361
>PRK13946 shikimate kinase; Provisional
Probab=94.91 E-value=0.019 Score=49.25 Aligned_cols=29 Identities=17% Similarity=0.271 Sum_probs=25.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEec
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVG 110 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~ 110 (317)
.+++.|+||||||+ .+|+.+|++|+..+.
T Consensus 12 ~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 12 TVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 35788999999999 999999999988763
No 362
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.86 E-value=0.077 Score=46.16 Aligned_cols=13 Identities=15% Similarity=0.013 Sum_probs=11.6
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
++|.||+|+||||
T Consensus 4 i~lvGptGvGKTT 16 (196)
T PF00448_consen 4 IALVGPTGVGKTT 16 (196)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEECCCCCchHh
Confidence 4688999999999
No 363
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.83 E-value=0.031 Score=51.46 Aligned_cols=66 Identities=18% Similarity=0.322 Sum_probs=43.9
Q ss_pred hhHHHhhhcCCCchh---hhhhcC----CceEEEEec---------hh-hhhhhcCCchHHHHHHHHHHHhhCCceEeec
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT----SATFLRVVG---------SE-LIQKYLGDGPKLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~----~~~~~~v~~---------s~-l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iD 143 (317)
|-+|..||.|+|||| ++-.+. ..+.+.+.- .. +.+..+|.--.........|.+..|.|||+-
T Consensus 126 GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlvG 205 (353)
T COG2805 126 GLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILVG 205 (353)
T ss_pred ceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEEe
Confidence 467899999999999 333333 345555522 22 2234567666666666777777889999998
Q ss_pred ccc
Q psy7780 144 EID 146 (317)
Q Consensus 144 EiD 146 (317)
|+-
T Consensus 206 EmR 208 (353)
T COG2805 206 EMR 208 (353)
T ss_pred ccc
Confidence 874
No 364
>KOG2680|consensus
Probab=94.82 E-value=0.0099 Score=54.61 Aligned_cols=53 Identities=21% Similarity=0.371 Sum_probs=40.6
Q ss_pred chh-hHHHhhhcCCCchh---hhhhcCC--ceEEEEechhhhhhhcCCchHHHHHHHHHH
Q psy7780 79 VVG-SELIQKYLGDGPKL---AVANQTS--ATFLRVVGSELIQKYLGDGPKLVRELFRVA 132 (317)
Q Consensus 79 i~g-~~Ll~G~pGtGKT~---aiA~~~~--~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a 132 (317)
|+| .+|+.|+||||||. .+|+.+| .||..++++++.+.....++. +-+.|..+
T Consensus 64 iaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~SlEmsKTEA-ltQAfRks 122 (454)
T KOG2680|consen 64 IAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYSLEMSKTEA-LTQAFRKS 122 (454)
T ss_pred ccceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceeeeecccHHHH-HHHHHHHh
Confidence 444 67899999999998 7888887 599999999998876666653 44445544
No 365
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.80 E-value=0.093 Score=44.83 Aligned_cols=22 Identities=14% Similarity=0.117 Sum_probs=15.9
Q ss_pred HHHHHHHHhhC--CceEeeccccc
Q psy7780 126 RELFRVAEEHA--PSIVFIDEIDA 147 (317)
Q Consensus 126 ~~~f~~a~~~~--P~Ii~iDEiD~ 147 (317)
+-.+..|-... |.++++||--.
T Consensus 95 rl~laral~~~~~p~llLlDEPt~ 118 (176)
T cd03238 95 RVKLASELFSEPPGTLFILDEPST 118 (176)
T ss_pred HHHHHHHHhhCCCCCEEEEeCCcc
Confidence 34455666677 99999999643
No 366
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.80 E-value=0.07 Score=49.89 Aligned_cols=14 Identities=14% Similarity=0.107 Sum_probs=12.6
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..+++|+||||||.
T Consensus 104 vtei~G~~GsGKT~ 117 (317)
T PRK04301 104 ITEFYGEFGSGKTQ 117 (317)
T ss_pred EEEEECCCCCCHhH
Confidence 56799999999998
No 367
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.79 E-value=0.015 Score=52.97 Aligned_cols=67 Identities=21% Similarity=0.297 Sum_probs=41.0
Q ss_pred hhhHHHhhhcCCCchh---hhhhcCC---ceEEEEec-hhhhhh------h-cCCchHHHHHHHHHHHhhCCceEeeccc
Q psy7780 80 VGSELIQKYLGDGPKL---AVANQTS---ATFLRVVG-SELIQK------Y-LGDGPKLVRELFRVAEEHAPSIVFIDEI 145 (317)
Q Consensus 80 ~g~~Ll~G~pGtGKT~---aiA~~~~---~~~~~v~~-s~l~~~------~-~g~~~~~l~~~f~~a~~~~P~Ii~iDEi 145 (317)
+|.+++.|++|+|||+ ++..++. ..++.+.- .++.-. + .........+++..+.+..|.+|++.|+
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEi 206 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEI 206 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE
T ss_pred ceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcCCCCccccccc
Confidence 3467899999999999 5555553 34444432 222111 0 0123446778888888999999999998
Q ss_pred c
Q psy7780 146 D 146 (317)
Q Consensus 146 D 146 (317)
-
T Consensus 207 R 207 (270)
T PF00437_consen 207 R 207 (270)
T ss_dssp -
T ss_pred C
Confidence 5
No 368
>KOG0477|consensus
Probab=94.76 E-value=0.053 Score=54.35 Aligned_cols=40 Identities=20% Similarity=0.141 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhh
Q psy7780 267 LSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYR 306 (317)
Q Consensus 267 ~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~ 306 (317)
.|-+-|..+++.+...|-..-+..|+.+|+..|+.-++..
T Consensus 721 iTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~ldS 760 (854)
T KOG0477|consen 721 ITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRVMLDS 760 (854)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHHHHHH
Confidence 3567777777766656655557789999999998877643
No 369
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.73 E-value=0.01 Score=48.84 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=20.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
+++.|+||+|||+ .++..++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 4678999999999 778888876654
No 370
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.72 E-value=0.074 Score=49.46 Aligned_cols=14 Identities=14% Similarity=0.136 Sum_probs=12.5
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..+++|+||+|||+
T Consensus 97 i~ei~G~~g~GKT~ 110 (310)
T TIGR02236 97 ITEVFGEFGSGKTQ 110 (310)
T ss_pred EEEEECCCCCCHHH
Confidence 45799999999998
No 371
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.71 E-value=0.024 Score=51.02 Aligned_cols=31 Identities=10% Similarity=0.128 Sum_probs=22.8
Q ss_pred HHHhhhcCCCchh---hhhhcC---CceEEEEechhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQT---SATFLRVVGSEL 113 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l 113 (317)
++|.|+||+|||+ ++|..+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 4688999999999 677765 456677665444
No 372
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.67 E-value=0.091 Score=46.65 Aligned_cols=14 Identities=14% Similarity=0.050 Sum_probs=12.3
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
-.++.||.|+|||+
T Consensus 33 ~~~itG~N~~GKSt 46 (222)
T cd03287 33 CQIITGPNMGGKSS 46 (222)
T ss_pred EEEEECCCCCCHHH
Confidence 35789999999998
No 373
>PF13245 AAA_19: Part of AAA domain
Probab=94.66 E-value=0.013 Score=42.99 Aligned_cols=12 Identities=25% Similarity=0.349 Sum_probs=10.4
Q ss_pred HHhhhcCCCchh
Q psy7780 84 LIQKYLGDGPKL 95 (317)
Q Consensus 84 Ll~G~pGtGKT~ 95 (317)
++.||||||||+
T Consensus 14 vv~g~pGtGKT~ 25 (76)
T PF13245_consen 14 VVQGPPGTGKTT 25 (76)
T ss_pred EEECCCCCCHHH
Confidence 358999999996
No 374
>PTZ00035 Rad51 protein; Provisional
Probab=94.66 E-value=0.11 Score=49.03 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=24.5
Q ss_pred hhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCC
Q psy7780 134 EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGF 177 (317)
Q Consensus 134 ~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~ 177 (317)
...+.+|+||=+-+++..... +.+...+.++.+.+++..|..+
T Consensus 211 ~~~~~lvVIDSital~r~~~~-~~~~~~~r~~~l~~~~~~L~~l 253 (337)
T PTZ00035 211 EERFALLIVDSATALFRVDYS-GRGELAERQQHLGKFLRALQKL 253 (337)
T ss_pred ccCccEEEEECcHHhhhhhcc-CcccHHHHHHHHHHHHHHHHHH
Confidence 456789999999998754221 1112223344455666555544
No 375
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.65 E-value=0.015 Score=50.67 Aligned_cols=13 Identities=38% Similarity=0.399 Sum_probs=10.7
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++.||||||||+
T Consensus 20 ~~i~GpPGTGKT~ 32 (236)
T PF13086_consen 20 TLIQGPPGTGKTT 32 (236)
T ss_dssp EEEE-STTSSHHH
T ss_pred EEEECCCCCChHH
Confidence 5689999999997
No 376
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.63 E-value=0.01 Score=50.88 Aligned_cols=33 Identities=15% Similarity=0.212 Sum_probs=24.7
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKY 117 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~ 117 (317)
+++.|+||+|||+ .+|+.+++.+ ++..+++...
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~--i~~~~l~~~~ 37 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPH--ISTGDLLREE 37 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECcHHHHHH
Confidence 3678999999999 8888887665 5555665543
No 377
>PRK13948 shikimate kinase; Provisional
Probab=94.57 E-value=0.018 Score=49.57 Aligned_cols=37 Identities=14% Similarity=0.293 Sum_probs=28.8
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGD 120 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~ 120 (317)
.+++.|++|+|||+ .+|+.++.+|+..+ .++....|.
T Consensus 12 ~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D--~~ie~~~g~ 51 (182)
T PRK13948 12 WVALAGFMGTGKSRIGWELSRALMLHFIDTD--RYIERVTGK 51 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEEECC--HHHHHHHhC
Confidence 35688999999999 99999999999766 444444443
No 378
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.50 E-value=0.0095 Score=50.41 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=21.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEe
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
+++.|.||||||| .++ ++|...++++
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 3578999999999 677 8888877754
No 379
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=94.49 E-value=0.14 Score=45.95 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=33.4
Q ss_pred CCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHh
Q psy7780 200 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHT 246 (317)
Q Consensus 200 ~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l 246 (317)
-++.+|.++.+.-.||+.++. =++..+-++ .+......|++.+.
T Consensus 127 ~~is~i~l~Q~~~~lp~~iR~--n~~y~i~~~-~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 127 YNISIIFLSQSYFHLPPNIRS--NIDYFIIFN-NSKRDLENIYRNMN 170 (241)
T ss_pred cceEEEEEeeecccCCHHHhh--cceEEEEec-CcHHHHHHHHHhcc
Confidence 357799999999999999977 677777675 46666666666553
No 380
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.45 E-value=0.021 Score=47.19 Aligned_cols=31 Identities=13% Similarity=0.214 Sum_probs=24.9
Q ss_pred hhhcCCCchh---hhhhcCCceEEEEechhhhhhhc
Q psy7780 86 QKYLGDGPKL---AVANQTSATFLRVVGSELIQKYL 118 (317)
Q Consensus 86 ~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~ 118 (317)
.||||+|||+ .+|++.|+ .+++..+++....
T Consensus 2 ~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~~~ 35 (151)
T PF00406_consen 2 LGPPGSGKGTQAKRLAKRYGL--VHISVGDLLREEI 35 (151)
T ss_dssp EESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHHHH
T ss_pred cCCCCCChHHHHHHHHHhcCc--ceechHHHHHHHH
Confidence 5999999999 89998875 5677778776554
No 381
>PRK06217 hypothetical protein; Validated
Probab=94.44 E-value=0.012 Score=50.37 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=23.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEe
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
+++.|+||+|||| ++|+.++.+++..+
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4678999999999 99999999887765
No 382
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.43 E-value=0.023 Score=52.81 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=42.5
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEech-hhh-------hhhcCCchHHHHHHHHHHHhhCCceEeeccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVVGS-ELI-------QKYLGDGPKLVRELFRVAEEHAPSIVFIDEI 145 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s-~l~-------~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEi 145 (317)
..++.|++|+|||+ ++++.. +..++.+.-. ++. ....++......+++..+.++.|..|++.|+
T Consensus 134 ~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGEi 213 (299)
T TIGR02782 134 NILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGEV 213 (299)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 67899999999999 666664 2334333221 221 1111222226778888899999999999987
Q ss_pred c
Q psy7780 146 D 146 (317)
Q Consensus 146 D 146 (317)
-
T Consensus 214 R 214 (299)
T TIGR02782 214 R 214 (299)
T ss_pred C
Confidence 4
No 383
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.42 E-value=0.057 Score=46.36 Aligned_cols=13 Identities=15% Similarity=-0.021 Sum_probs=11.4
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++.||.|.|||+
T Consensus 2 ~~ltG~N~~GKst 14 (185)
T smart00534 2 VIITGPNMGGKST 14 (185)
T ss_pred EEEECCCCCcHHH
Confidence 3688999999998
No 384
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.37 E-value=0.011 Score=48.11 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=23.3
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEEEe
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
.+.|+||||||+ .+|..++++++..+
T Consensus 3 ~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 3 AIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 578999999999 89999999988876
No 385
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.35 E-value=0.048 Score=45.15 Aligned_cols=63 Identities=21% Similarity=0.216 Sum_probs=36.4
Q ss_pred HHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhh---cCC----chHHHHHHHHHHHh--hCCceEeeccc
Q psy7780 83 ELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKY---LGD----GPKLVRELFRVAEE--HAPSIVFIDEI 145 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~---~g~----~~~~l~~~f~~a~~--~~P~Ii~iDEi 145 (317)
+++.|+||+|||+ .++..+ +...+.++.-.+.... .+. ....++.+...++. .+..++++|..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VIid~~ 79 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLADAGLIVIAAFI 79 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCEEEEccC
Confidence 3578999999999 777766 6666777655443311 111 12334444444443 23467777743
No 386
>PRK12608 transcription termination factor Rho; Provisional
Probab=94.34 E-value=0.2 Score=47.90 Aligned_cols=46 Identities=13% Similarity=0.129 Sum_probs=28.2
Q ss_pred EEeeeeecCCcEEEecc-----cCCeeeeeeccccCccCcCcccEEEEecc
Q psy7780 4 GTLEEIIDDNHAIVSTS-----VGSEHYVSILSFVDKDQLEPGCSVLLNHK 49 (317)
Q Consensus 4 ~~~~~~l~~~~~~v~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 49 (317)
.-+.|+++++.....+. .++.-+.--.+.+.+..|+.|+.|.-..+
T Consensus 20 ~g~l~~~~~g~gflr~~~~~~~~~~~d~yv~~~~i~~~~l~~Gd~V~~~~r 70 (380)
T PRK12608 20 LGVLEILGDGFGFLRSARRNYLPSPDDVFVPPALIRRFNLRTGDVVEGVAR 70 (380)
T ss_pred eEEEEEcCCCceEeecCccCCCCCCCCeeeCHHHHHHhCCCCCCEEEeccC
Confidence 34677888876665542 22222222245667788999999987543
No 387
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.25 E-value=0.016 Score=48.47 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=20.0
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
++.||||+|||+ .+++.++..++.
T Consensus 2 ~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 2 VLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 467999999999 888998876654
No 388
>PLN02200 adenylate kinase family protein
Probab=94.23 E-value=0.033 Score=49.87 Aligned_cols=33 Identities=9% Similarity=0.201 Sum_probs=26.5
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKY 117 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~ 117 (317)
+++.|+||+|||+ .+|+++|+. ++++++++.+.
T Consensus 46 i~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~~ 81 (234)
T PLN02200 46 TFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRRE 81 (234)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHHH
Confidence 4688999999999 789988864 67788877653
No 389
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.21 E-value=0.074 Score=46.22 Aligned_cols=14 Identities=21% Similarity=-0.062 Sum_probs=12.7
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
-.++.||.|+|||+
T Consensus 31 ~~~l~G~Ng~GKSt 44 (202)
T cd03243 31 LLLITGPNMGGKST 44 (202)
T ss_pred EEEEECCCCCccHH
Confidence 46799999999999
No 390
>PRK14974 cell division protein FtsY; Provisional
Probab=94.19 E-value=0.079 Score=50.00 Aligned_cols=67 Identities=15% Similarity=0.241 Sum_probs=36.0
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhh-------hhhh---cC---------Cc-hHHHHHHHHHHHhh
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSEL-------IQKY---LG---------DG-PKLVRELFRVAEEH 135 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l-------~~~~---~g---------~~-~~~l~~~f~~a~~~ 135 (317)
.++|.|+||+|||| .+|.. .+..+..+.+-.. +..| .| .. ...+.+..+.++..
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~~ 221 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKAR 221 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHhC
Confidence 46789999999999 34433 2444444443211 1100 11 11 12234444555555
Q ss_pred CCceEeecccccc
Q psy7780 136 APSIVFIDEIDAV 148 (317)
Q Consensus 136 ~P~Ii~iDEiD~l 148 (317)
.-.+|+||....+
T Consensus 222 ~~DvVLIDTaGr~ 234 (336)
T PRK14974 222 GIDVVLIDTAGRM 234 (336)
T ss_pred CCCEEEEECCCcc
Confidence 4579999987654
No 391
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=94.16 E-value=0.16 Score=44.05 Aligned_cols=13 Identities=15% Similarity=0.112 Sum_probs=12.3
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++.||.|+|||+
T Consensus 31 ~~ltG~Ng~GKSt 43 (200)
T cd03280 31 LVITGPNAGGKTV 43 (200)
T ss_pred EEEECCCCCChHH
Confidence 6899999999999
No 392
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.14 E-value=0.21 Score=43.95 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=22.8
Q ss_pred HHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhc
Q psy7780 131 VAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLD 175 (317)
Q Consensus 131 ~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld 175 (317)
.+.+..+..++||-+..+...- +...+....+..++..+.
T Consensus 102 ~i~~~~~~~vVIDsls~l~~~~-----~~~~~~r~~l~~l~~~lk 141 (224)
T TIGR03880 102 LIKELGASRVVIDPISLLETLF-----DDDAERRTELFRFYSSLR 141 (224)
T ss_pred HHHHhCCCEEEEcChHHHhhhc-----CCHHHHHHHHHHHHHHHH
Confidence 3455678899999888773211 112233344556666553
No 393
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.13 E-value=0.0084 Score=52.94 Aligned_cols=12 Identities=17% Similarity=0.376 Sum_probs=10.9
Q ss_pred HHhhhcCCCchh
Q psy7780 84 LIQKYLGDGPKL 95 (317)
Q Consensus 84 Ll~G~pGtGKT~ 95 (317)
+++|+||+|||+
T Consensus 2 vv~G~pGsGKSt 13 (234)
T PF01443_consen 2 VVHGVPGSGKST 13 (234)
T ss_pred EEEcCCCCCHHH
Confidence 468999999999
No 394
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.13 E-value=0.1 Score=49.43 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=27.9
Q ss_pred HHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcc
Q psy7780 132 AEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR 180 (317)
Q Consensus 132 a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 180 (317)
.....+.+|+||=+-+++..... +.+...+.++.|.+++..|..+...
T Consensus 214 ~~~~~~~LIVIDSI~alfr~~~~-~~g~l~~r~~~L~~~l~~L~~lA~~ 261 (342)
T PLN03186 214 MAETRFALMIVDSATALYRTEFS-GRGELSARQMHLGKFLRSLQRLADE 261 (342)
T ss_pred hhccCCCEEEEeCcHHHHHHHhc-CCccHHHHHHHHHHHHHHHHHHHHH
Confidence 34556899999999998754221 1122223344566776666554433
No 395
>PF13479 AAA_24: AAA domain
Probab=94.12 E-value=0.05 Score=47.86 Aligned_cols=66 Identities=18% Similarity=0.068 Sum_probs=37.2
Q ss_pred HHHhhhcCCCchhhhhhcCCceEEEEechhhh-h------hhcCCchHHHHHHHHHHHh--hCCceEeecccccc
Q psy7780 83 ELIQKYLGDGPKLAVANQTSATFLRVVGSELI-Q------KYLGDGPKLVRELFRVAEE--HAPSIVFIDEIDAV 148 (317)
Q Consensus 83 ~Ll~G~pGtGKT~aiA~~~~~~~~~v~~s~l~-~------~~~g~~~~~l~~~f~~a~~--~~P~Ii~iDEiD~l 148 (317)
.++||+||+|||+.++.--+.-|+.+..+... . .+.=.+-..+.+.++.+.. ..-..|+||-++.+
T Consensus 6 ~lIyG~~G~GKTt~a~~~~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 6 ILIYGPPGSGKTTLAASLPKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISWL 80 (213)
T ss_pred EEEECCCCCCHHHHHHhCCCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHH
Confidence 47899999999993333333344555444211 0 0111234456666654422 23368999988875
No 396
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=94.08 E-value=0.12 Score=43.18 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=12.3
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.||.|+|||+
T Consensus 23 ~~~i~G~NgsGKS~ 36 (162)
T cd03227 23 LTIITGPNGSGKST 36 (162)
T ss_pred EEEEECCCCCCHHH
Confidence 46789999999998
No 397
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.08 E-value=0.35 Score=44.18 Aligned_cols=209 Identities=14% Similarity=0.050 Sum_probs=95.7
Q ss_pred hhhHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHH-hhCCceEeecccccc-------
Q psy7780 80 VGSELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAE-EHAPSIVFIDEIDAV------- 148 (317)
Q Consensus 80 ~g~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~-~~~P~Ii~iDEiD~l------- 148 (317)
+|+.|+.|.+|+||++ .+|.-+++.++.+..+.-.+ ..+-...++.++..|- +..|.+++|+|-+-.
T Consensus 31 ~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~ 108 (268)
T PF12780_consen 31 RGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLED 108 (268)
T ss_dssp TEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHH
T ss_pred CCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHHHHHHHHHHHhccCCCeEEEecCcccchHhHHHH
Confidence 4678899999999999 67777788999887543111 1122456777777765 556888888764432
Q ss_pred ----cccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCC--eEEEEEcCCCCC-----CCcc
Q psy7780 149 ----GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGD--VKVIMATNRIET-----LDPA 217 (317)
Q Consensus 149 ----~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~--v~vI~tTN~~~~-----Ld~a 217 (317)
...-.-.+-=...|...++..+-.......-... .....+-+......+ |++.+....+.. --|+
T Consensus 109 in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~----~~~~~~~F~~rvr~nLHivl~~sp~~~~~r~~~~~fPa 184 (268)
T PF12780_consen 109 INSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDS----RESLYEFFIERVRKNLHIVLCMSPVGPNFRDRCRSFPA 184 (268)
T ss_dssp HHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SS----HHHHHHHHHHHHCCCEEEEEEESTTTTCCCHHHHHHCC
T ss_pred HHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCc----hHHHHHHHHHHHHhheeEEEEECCCCchHHHHHHhCcc
Confidence 1111000001123444444444333221110000 001111111111133 343333322221 2467
Q ss_pred ccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH--HhcCCCcCHHH
Q psy7780 218 LIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMAL--RERRMKVTNED 295 (317)
Q Consensus 218 l~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~--~~~~~~it~~d 295 (317)
|.+ ++. ...+..-..+....+-..+++.....+...-+.++.. -..+..-+.++...=. .++...+|+.-
T Consensus 185 L~~--~ct-IdW~~~W~~eaL~~Va~~~l~~~~~~~~~~~~~l~~~-----~~~iH~sv~~~s~~y~~~~~r~~yvTP~s 256 (268)
T PF12780_consen 185 LVN--CCT-IDWFDPWPEEALLSVANKFLSDIELLSEELKKSLAEI-----MVFIHQSVEEISRKYLQELRRYNYVTPKS 256 (268)
T ss_dssp HHH--HSE-EEEEES--HHHHHHHHHHHCCHHHTSS--HHHHHHHH-----HHHHHHHHHHHHHHHHHHCS------HHH
T ss_pred hhc--ccE-EEeCCcCCHHHHHHHHHHHHHhhcccchhHHHHHHHH-----HHHHhccchHhHHHHHHHcCCcceECcHH
Confidence 777 664 5666677888999999988876432221111222221 2233333333322211 23456899998
Q ss_pred HHHHHHH
Q psy7780 296 FKKSKES 302 (317)
Q Consensus 296 ~~~al~~ 302 (317)
+.+-++-
T Consensus 257 yL~~i~~ 263 (268)
T PF12780_consen 257 YLEFIKT 263 (268)
T ss_dssp HHHHHH-
T ss_pred HHHHHhh
Confidence 8776653
No 398
>PRK14530 adenylate kinase; Provisional
Probab=94.06 E-value=0.016 Score=50.95 Aligned_cols=34 Identities=12% Similarity=0.141 Sum_probs=25.2
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYL 118 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~ 118 (317)
+++.|+||+|||| .+|+.++++++. ..+++....
T Consensus 6 I~i~G~pGsGKsT~~~~La~~~~~~~i~--~g~~lr~~~ 42 (215)
T PRK14530 6 ILLLGAPGAGKGTQSSNLAEEFGVEHVT--TGDALRANK 42 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEe--ccHHHHHhc
Confidence 4578999999999 889999876554 455554433
No 399
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.03 E-value=0.035 Score=52.33 Aligned_cols=65 Identities=15% Similarity=0.236 Sum_probs=42.8
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc--eEEEEe-chhhhh-----------h--hcCCchHHHHHHHHHHHhhCCceEee
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA--TFLRVV-GSELIQ-----------K--YLGDGPKLVRELFRVAEEHAPSIVFI 142 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~--~~~~v~-~s~l~~-----------~--~~g~~~~~l~~~f~~a~~~~P~Ii~i 142 (317)
.+++.|++|+|||| +++.+... .++.+. ..++.- . -.|...-...+++..+.+..|..|++
T Consensus 162 nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~Iiv 241 (332)
T PRK13900 162 NIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRIIV 241 (332)
T ss_pred cEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeEEE
Confidence 67899999999999 66666542 233331 112210 0 01223345778889999999999999
Q ss_pred cccc
Q psy7780 143 DEID 146 (317)
Q Consensus 143 DEiD 146 (317)
.|+-
T Consensus 242 GEiR 245 (332)
T PRK13900 242 GELR 245 (332)
T ss_pred EecC
Confidence 9985
No 400
>PRK10263 DNA translocase FtsK; Provisional
Probab=94.03 E-value=0.099 Score=56.77 Aligned_cols=43 Identities=19% Similarity=0.388 Sum_probs=34.7
Q ss_pred CCeEEEEEcCCCC--CCCccccCCCcceeEEEeCCCCHHHHHHHHHH
Q psy7780 200 GDVKVIMATNRIE--TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNI 244 (317)
Q Consensus 200 ~~v~vI~tTN~~~--~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~ 244 (317)
-.|.+|.+|.||+ .|...++. -|..+|-|..-+..+-+.||..
T Consensus 1174 aGIHLILATQRPsvDVItg~IKA--N~ptRIAfrVsS~~DSrtILd~ 1218 (1355)
T PRK10263 1174 AGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKIDSRTILDQ 1218 (1355)
T ss_pred cCeEEEEEecCcccccchHHHHh--hccceEEEEcCCHHHHHHhcCC
Confidence 5688999999986 57777776 6888899998888888888743
No 401
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.02 E-value=0.015 Score=49.04 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=23.5
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEe
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
+++.|+||+|||+ .+|+.+|++|+..+
T Consensus 5 i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 5 LFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 4678999999999 99999999988654
No 402
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.01 E-value=0.028 Score=49.38 Aligned_cols=32 Identities=9% Similarity=0.194 Sum_probs=23.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
+++.|+||+|||+ .+|..+++..+ +.++++.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~i--s~~dl~r~ 37 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHI--STGDMLRA 37 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEE--ECCccHHH
Confidence 4678999999999 78998886554 45555543
No 403
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=93.99 E-value=0.3 Score=43.84 Aligned_cols=90 Identities=12% Similarity=0.189 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHh----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccccc
Q psy7780 122 PKLVRELFRVAEE----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIY 197 (317)
Q Consensus 122 ~~~l~~~f~~a~~----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 197 (317)
-..+|++-+.+.. ...-|++|+++|.+... ....|...|++ -
T Consensus 71 IdqIReL~~~l~~~p~~g~~KViII~~ae~mt~~-----------AANALLKtLEE---P-------------------- 116 (263)
T PRK06581 71 IEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLN-----------AANSCLKILED---A-------------------- 116 (263)
T ss_pred HHHHHHHHHHHhhCcccCCcEEEEEechHHhCHH-----------HHHHHHHhhcC---C--------------------
Confidence 4466666555532 23469999999998532 23445555544 2
Q ss_pred CCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC
Q psy7780 198 LPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM 249 (317)
Q Consensus 198 ~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~ 249 (317)
|.++++|..|++++.|.|.+++ |+. .+.|+.|+...-.++....+..+
T Consensus 117 -P~~t~fILit~~~~~LLpTIrS--RCq-~i~~~~p~~~~~~e~~~~~~~p~ 164 (263)
T PRK06581 117 -PKNSYIFLITSRAASIISTIRS--RCF-KINVRSSILHAYNELYSQFIQPI 164 (263)
T ss_pred -CCCeEEEEEeCChhhCchhHhh--ceE-EEeCCCCCHHHHHHHHHHhcccc
Confidence 1568888889899999999999 994 89999999988888887777654
No 404
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=93.96 E-value=0.064 Score=50.24 Aligned_cols=44 Identities=16% Similarity=0.257 Sum_probs=24.0
Q ss_pred hhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCC
Q psy7780 134 EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFD 178 (317)
Q Consensus 134 ~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~ 178 (317)
...+.+|+||-+-+++...... .+.-...+..+.+++..|..+.
T Consensus 189 ~~~~~LvVIDSI~al~r~~~~~-~~~~~~rq~~l~~~~~~L~~la 232 (316)
T TIGR02239 189 ESRFALLIVDSATALYRTDFSG-RGELSARQMHLARFLRSLQRLA 232 (316)
T ss_pred cCCccEEEEECcHHHhhhhcCC-cchHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999886542211 1111122344455555555443
No 405
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.95 E-value=0.11 Score=50.02 Aligned_cols=125 Identities=14% Similarity=0.111 Sum_probs=63.7
Q ss_pred hHHHhhhcCCCchh---hhhhcC---------CceEEEEechhh-----hhh---------hcCCchHHHHHHHHHHHhh
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---------SATFLRVVGSEL-----IQK---------YLGDGPKLVRELFRVAEEH 135 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---------~~~~~~v~~s~l-----~~~---------~~g~~~~~l~~~f~~a~~~ 135 (317)
.++|.||+|+|||| -+|..+ ...++.+++-.. +.. ........+...+....
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~-- 253 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK-- 253 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC--
Confidence 57899999999999 344322 234555554221 111 12233344555444443
Q ss_pred CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCC
Q psy7780 136 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215 (317)
Q Consensus 136 ~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld 215 (317)
.-.+|+||.+..... + ...+.++...++...... ..++|+.+|.....+.
T Consensus 254 ~~DlVLIDTaGr~~~---------~---~~~l~el~~~l~~~~~~~------------------e~~LVlsat~~~~~~~ 303 (388)
T PRK12723 254 DFDLVLVDTIGKSPK---------D---FMKLAEMKELLNACGRDA------------------EFHLAVSSTTKTSDVK 303 (388)
T ss_pred CCCEEEEcCCCCCcc---------C---HHHHHHHHHHHHhcCCCC------------------eEEEEEcCCCCHHHHH
Confidence 347999999876521 1 111334444444332110 3467888887777777
Q ss_pred ccccCCCc--ceeEEEeCCCCHHHHH
Q psy7780 216 PALIRPGR--IDRKIEFPLPDEKTKR 239 (317)
Q Consensus 216 ~al~rpgR--f~~~I~~~~P~~~~r~ 239 (317)
..+.+-.. ++ .+-|-..|+..+.
T Consensus 304 ~~~~~~~~~~~~-~~I~TKlDet~~~ 328 (388)
T PRK12723 304 EIFHQFSPFSYK-TVIFTKLDETTCV 328 (388)
T ss_pred HHHHHhcCCCCC-EEEEEeccCCCcc
Confidence 55543111 23 3344455554444
No 406
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.92 E-value=0.26 Score=49.21 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhCCceEeecccccccc
Q psy7780 125 VRELFRVAEEHAPSIVFIDEIDAVGT 150 (317)
Q Consensus 125 l~~~f~~a~~~~P~Ii~iDEiD~l~~ 150 (317)
+..+-+.+....|..|+||-+..+..
T Consensus 119 ~~~l~~~i~~~~~~~vVIDSls~l~~ 144 (509)
T PRK09302 119 FIRIEYAIDKIGAKRVVLDSIEALFS 144 (509)
T ss_pred HHHHHHHHHhhCCCEEEECCHHHHHh
Confidence 33444455667889999999988753
No 407
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.90 E-value=0.038 Score=50.41 Aligned_cols=66 Identities=18% Similarity=0.239 Sum_probs=41.2
Q ss_pred hhHHHhhhcCCCchh---hhhhcCC---ceEEEEe-chhhh-----hhhcC-CchHHHHHHHHHHHhhCCceEeecccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTS---ATFLRVV-GSELI-----QKYLG-DGPKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~---~~~~~v~-~s~l~-----~~~~g-~~~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
|.+++.|++|+|||| ++..++. ..++.+. ..++. .-.+. +......++...+.++.|.+|+++|+.
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 357899999999999 5544442 3455542 11211 11111 122346677777888899999999984
No 408
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=93.83 E-value=0.065 Score=49.24 Aligned_cols=65 Identities=25% Similarity=0.355 Sum_probs=43.0
Q ss_pred hHHHhhhcCCCchh---------hhhhcCCceEEEEechhhhhhhcCCch-----HHHHHHHHHHH--------hhCCce
Q psy7780 82 SELIQKYLGDGPKL---------AVANQTSATFLRVVGSELIQKYLGDGP-----KLVRELFRVAE--------EHAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---------aiA~~~~~~~~~v~~s~l~~~~~g~~~-----~~l~~~f~~a~--------~~~P~I 139 (317)
|+|+.||.|.||++ ..-+++.-.|++|+|..+... +. ..++-.|.-|+ ......
T Consensus 210 p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd----~amsalfghvkgaftga~~~r~gllrsadggm 285 (531)
T COG4650 210 PILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGD----TAMSALFGHVKGAFTGARESREGLLRSADGGM 285 (531)
T ss_pred CeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCc----hHHHHHHhhhccccccchhhhhhhhccCCCce
Confidence 89999999999998 334556679999999887532 11 01222222222 122469
Q ss_pred Eeecccccccc
Q psy7780 140 VFIDEIDAVGT 150 (317)
Q Consensus 140 i~iDEiD~l~~ 150 (317)
+|+|||..++.
T Consensus 286 lfldeigelga 296 (531)
T COG4650 286 LFLDEIGELGA 296 (531)
T ss_pred EehHhhhhcCc
Confidence 99999998864
No 409
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=93.79 E-value=0.1 Score=54.34 Aligned_cols=67 Identities=10% Similarity=0.113 Sum_probs=40.0
Q ss_pred hHHHhhhcCCCchh------hhhhcCC--ceEEEEechh----hhhhhcCCchHHHHHHHHHHH----------hhCCce
Q psy7780 82 SELIQKYLGDGPKL------AVANQTS--ATFLRVVGSE----LIQKYLGDGPKLVRELFRVAE----------EHAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~------aiA~~~~--~~~~~v~~s~----l~~~~~g~~~~~l~~~f~~a~----------~~~P~I 139 (317)
..++.|+||||||+ .++...+ ..++-+..+. -+....|.....++.++.... .....+
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~l 419 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCDL 419 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCCE
Confidence 36789999999999 3344445 4555554332 223334544556666665321 123479
Q ss_pred Eeecccccc
Q psy7780 140 VFIDEIDAV 148 (317)
Q Consensus 140 i~iDEiD~l 148 (317)
|++||+--+
T Consensus 420 lIvDEaSMv 428 (720)
T TIGR01448 420 LIVDESSMM 428 (720)
T ss_pred EEEeccccC
Confidence 999998665
No 410
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=93.75 E-value=0.051 Score=49.72 Aligned_cols=67 Identities=15% Similarity=0.195 Sum_probs=32.7
Q ss_pred HHHhhhcCCCchh---hhhh---cCCceEEEEechhhh-h--hh-cCCchHHHHHHHHHHHh---hCCceEeeccccccc
Q psy7780 83 ELIQKYLGDGPKL---AVAN---QTSATFLRVVGSELI-Q--KY-LGDGPKLVRELFRVAEE---HAPSIVFIDEIDAVG 149 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~---~~~~~~~~v~~s~l~-~--~~-~g~~~~~l~~~f~~a~~---~~P~Ii~iDEiD~l~ 149 (317)
+++.|.||+|||+ .++. +.+..+..++-..+. . .| -...++.+|..+..+-+ ....||++|+...+-
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~nYiK 83 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNNYIK 83 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S---SH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCchHH
Confidence 4689999999999 3333 356778788765554 1 12 12335555554443321 223799999887653
No 411
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=93.68 E-value=0.13 Score=43.95 Aligned_cols=16 Identities=31% Similarity=0.410 Sum_probs=12.5
Q ss_pred hCCceEeecccccccc
Q psy7780 135 HAPSIVFIDEIDAVGT 150 (317)
Q Consensus 135 ~~P~Ii~iDEiD~l~~ 150 (317)
..|.++++||.+.-+.
T Consensus 115 ~~p~llilDEp~~~LD 130 (178)
T cd03239 115 KPSPFYVLDEIDAALD 130 (178)
T ss_pred CCCCEEEEECCCCCCC
Confidence 4689999999886543
No 412
>PRK01184 hypothetical protein; Provisional
Probab=93.64 E-value=0.021 Score=48.77 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=23.3
Q ss_pred HHHhhhcCCCchh--hhhhcCCceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL--AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~--aiA~~~~~~~~~v~~s~l~~ 115 (317)
+.+.|+||+|||| .++++.|++++.. ++++.
T Consensus 4 i~l~G~~GsGKsT~a~~~~~~g~~~i~~--~d~lr 36 (184)
T PRK01184 4 IGVVGMPGSGKGEFSKIAREMGIPVVVM--GDVIR 36 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHcCCcEEEh--hHHHH
Confidence 3578999999999 6788888777554 45543
No 413
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.62 E-value=0.021 Score=48.58 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=23.8
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
+++.|+||+|||| .+|+++|.. .++.++++-.
T Consensus 6 i~i~G~~GsGKsTl~~~l~~~~g~~--~~~~g~~~~~ 40 (188)
T TIGR01360 6 IFIVGGPGSGKGTQCEKIVEKYGFT--HLSTGDLLRA 40 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc--EEeHHHHHHH
Confidence 4578999999999 788888754 5566665543
No 414
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.62 E-value=0.019 Score=51.23 Aligned_cols=32 Identities=6% Similarity=0.124 Sum_probs=24.2
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
+++.||||+|||| .+|+.++++++ +..+++..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g~~~i--s~gdllr~ 43 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKENLKHI--NMGNILRE 43 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEE--ECChHHHH
Confidence 4678999999999 88898886555 45566544
No 415
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.61 E-value=0.098 Score=44.08 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=19.0
Q ss_pred HHHhhhcCCCchh---hhhh---cCCceEEEEech
Q psy7780 83 ELIQKYLGDGPKL---AVAN---QTSATFLRVVGS 111 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~---~~~~~~~~v~~s 111 (317)
.++.|+||+|||+ .+|. +.+..+..+++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 3578999999999 3333 235566666543
No 416
>PRK02496 adk adenylate kinase; Provisional
Probab=93.57 E-value=0.021 Score=48.80 Aligned_cols=31 Identities=10% Similarity=0.193 Sum_probs=22.8
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~ 115 (317)
+++.|+||+|||+ .+|..++++.+ +..+++.
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i--~~~~~~~ 37 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHI--STGDILR 37 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEE--EhHHHHH
Confidence 3578999999999 88888886554 4445443
No 417
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=93.54 E-value=0.47 Score=39.99 Aligned_cols=130 Identities=15% Similarity=0.212 Sum_probs=67.3
Q ss_pred hhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHH
Q psy7780 87 KYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREI 163 (317)
Q Consensus 87 G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~ 163 (317)
+.+|||||| |+++-.+- +=.+..-++.++ ...+.++.+.+...+....+||.|==. ....+.
T Consensus 6 AtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNN-----------h~~reR 70 (168)
T PF08303_consen 6 ATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNN-----------HQKRER 70 (168)
T ss_pred cCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCC-----------chHHHH
Confidence 569999999 77766652 333433333222 345566677776644444678877322 222222
Q ss_pred HHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccc--------cCCCcceeEEEeCCCCH
Q psy7780 164 QRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPAL--------IRPGRIDRKIEFPLPDE 235 (317)
Q Consensus 164 ~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al--------~rpgRf~~~I~~~~P~~ 235 (317)
++.+..+-.....+-.. ..++.+|+-.-..+.-.+.+ +.-|==+..|.....+.
T Consensus 71 ~ql~~~~~~~~~~yl~~------------------~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~ 132 (168)
T PF08303_consen 71 KQLFEDVSQLKPDYLPY------------------DTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDE 132 (168)
T ss_pred HHHHHHHHHhccccccc------------------CCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCH
Confidence 33333222221111100 14677777765444422222 22121235677666677
Q ss_pred HHHHHHHHHHhcCC
Q psy7780 236 KTKRRIFNIHTSRM 249 (317)
Q Consensus 236 ~~r~~Il~~~l~~~ 249 (317)
..-..|++.+++++
T Consensus 133 ~~~~~Im~gFi~rf 146 (168)
T PF08303_consen 133 KKVEGIMEGFIKRF 146 (168)
T ss_pred HHHHHHHHHHHHhc
Confidence 77888888887765
No 418
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.51 E-value=0.22 Score=40.80 Aligned_cols=64 Identities=14% Similarity=0.167 Sum_probs=34.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc--eEEEEechh---hhhhhcCCchHHHHHHHHHHHhhCCceEeeccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA--TFLRVVGSE---LIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDA 147 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~--~~~~v~~s~---l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~ 147 (317)
...+.|++|+|||+ +++..... --+.++... ++.. ...++ .-+-.+..|-...|.++++||-..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~-lS~G~-~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQ-LSGGE-KMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEcc-CCHHH-HHHHHHHHHHhcCCCEEEEeCCcc
Confidence 35688999999999 77776531 011111100 0000 11111 222234556667899999999654
No 419
>PRK14528 adenylate kinase; Provisional
Probab=93.44 E-value=0.021 Score=49.19 Aligned_cols=31 Identities=10% Similarity=0.182 Sum_probs=23.5
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~ 115 (317)
+++.||||+|||+ .+|+..+++.+. ..+++.
T Consensus 4 i~i~G~pGsGKtt~a~~la~~~~~~~is--~~~~lr 37 (186)
T PRK14528 4 IIFMGPPGAGKGTQAKILCERLSIPQIS--TGDILR 37 (186)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeee--CCHHHH
Confidence 3578999999999 888888876544 555544
No 420
>PRK06547 hypothetical protein; Provisional
Probab=93.44 E-value=0.021 Score=48.67 Aligned_cols=27 Identities=26% Similarity=0.317 Sum_probs=22.2
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEe
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
+++.|++|+|||+ .+|+.++.++++.+
T Consensus 18 i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 18 VLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 5678999999999 88888887777543
No 421
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.42 E-value=0.049 Score=46.78 Aligned_cols=64 Identities=22% Similarity=0.318 Sum_probs=39.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc--eEEEEech-hhhh---h----------hcCCchHHHHHHHHHHHhhCCceEee
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA--TFLRVVGS-ELIQ---K----------YLGDGPKLVRELFRVAEEHAPSIVFI 142 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~--~~~~v~~s-~l~~---~----------~~g~~~~~l~~~f~~a~~~~P~Ii~i 142 (317)
.+++.|++|+|||+ +++..... ..+.+... ++.. . ..+.......+++..+.+..|.+|++
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i~i 106 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRIIV 106 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEEEE
Confidence 45789999999999 66665431 22222211 1110 0 00122345677788888888999999
Q ss_pred ccc
Q psy7780 143 DEI 145 (317)
Q Consensus 143 DEi 145 (317)
.|+
T Consensus 107 gEi 109 (186)
T cd01130 107 GEV 109 (186)
T ss_pred Ecc
Confidence 998
No 422
>PLN02674 adenylate kinase
Probab=93.41 E-value=0.037 Score=49.81 Aligned_cols=33 Identities=6% Similarity=0.190 Sum_probs=25.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKY 117 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~ 117 (317)
+++-||||+||+| .+|+..+ +..++..+++...
T Consensus 34 i~l~G~PGsGKgT~a~~La~~~~--~~his~GdllR~~ 69 (244)
T PLN02674 34 LILIGPPGSGKGTQSPIIKDEYC--LCHLATGDMLRAA 69 (244)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC--CcEEchhHHHHHH
Confidence 5688999999999 8888887 4566677776554
No 423
>PRK13764 ATPase; Provisional
Probab=93.39 E-value=0.03 Score=56.63 Aligned_cols=66 Identities=20% Similarity=0.166 Sum_probs=37.2
Q ss_pred hhHHHhhhcCCCchh---hhhhcCC---ceEEEEe-chhh-----hhhhcCCchHHHHHHHHHHHhhCCceEeeccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTS---ATFLRVV-GSEL-----IQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDA 147 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~---~~~~~v~-~s~l-----~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~ 147 (317)
+.+|+.|+||+|||| +++.++. ..+..+. ..++ ...|. ............+....|.+|++||+-.
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~-~~~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYS-KLEGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEe-eccccHHHHHHHHHhhCCCEEEECCCCC
Confidence 367899999999999 6665553 3332331 1122 12221 0011123333344567899999999753
No 424
>PRK14526 adenylate kinase; Provisional
Probab=93.38 E-value=0.045 Score=48.17 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=24.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
+++.|+||+|||+ .+|..++.+ .++.++++..
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~--~is~G~llr~ 37 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYY--HISTGDLFRE 37 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc--eeecChHHHH
Confidence 3578999999999 788888755 4556666554
No 425
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.32 E-value=0.31 Score=48.35 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhCCceEeeccccccc
Q psy7780 124 LVRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 124 ~l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
.+..+........+..|+||=+..+.
T Consensus 108 ~l~~i~~~ls~g~~qRVvIDSl~aL~ 133 (484)
T TIGR02655 108 LIERINYAIRKYKAKRVSIDSVTAVF 133 (484)
T ss_pred HHHHHHHHHHHhCCcEEEEeehhHhh
Confidence 44555556666778889999777664
No 426
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.31 E-value=0.024 Score=49.61 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=23.8
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
+++.|+||+|||+ .+|+.+|+.. ++.++++..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~--is~gdllr~ 36 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPH--ISTGDLLRA 36 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCe--eehhHHHHH
Confidence 3578999999999 7888887654 555566554
No 427
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=93.25 E-value=0.035 Score=48.76 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=25.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
+++.||+|||||. ++|+..|.+++..+.-++...
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~ 40 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPE 40 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GG
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEecceecccc
Confidence 4688999999998 999999999999988776553
No 428
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.23 E-value=0.4 Score=42.26 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=18.9
Q ss_pred hHHHhhhcCCCchh---hhhh---cCCceEEEEec
Q psy7780 82 SELIQKYLGDGPKL---AVAN---QTSATFLRVVG 110 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~---~~~~~~~~v~~ 110 (317)
..++.|+||+|||+ .++. ..+-..+.++.
T Consensus 22 ~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 22 FVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 46789999999998 2222 22445555553
No 429
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.21 E-value=0.37 Score=40.86 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=23.1
Q ss_pred HHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHh
Q psy7780 128 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQL 174 (317)
Q Consensus 128 ~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l 174 (317)
.+..|--..|.++++||--.-. +......+.+++..+
T Consensus 108 ~laral~~~p~~lllDEP~~~L----------D~~~~~~l~~~l~~~ 144 (178)
T cd03247 108 ALARILLQDAPIVLLDEPTVGL----------DPITERQLLSLIFEV 144 (178)
T ss_pred HHHHHHhcCCCEEEEECCcccC----------CHHHHHHHHHHHHHH
Confidence 4555566779999999965432 223345566666654
No 430
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.17 E-value=0.042 Score=47.09 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=23.5
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
++-|+||+|||| .+|+. .++.+++..++.-.
T Consensus 4 iilG~pGaGK~T~A~~La~~--~~i~hlstgd~~r~ 37 (178)
T COG0563 4 LILGPPGAGKSTLAKKLAKK--LGLPHLDTGDILRA 37 (178)
T ss_pred EEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHhHh
Confidence 577999999999 78887 56677776655543
No 431
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.16 E-value=0.061 Score=50.15 Aligned_cols=65 Identities=12% Similarity=0.237 Sum_probs=41.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc--eEEEEe-chhhhh---h---------hcCCchHHHHHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA--TFLRVV-GSELIQ---K---------YLGDGPKLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~--~~~~v~-~s~l~~---~---------~~g~~~~~l~~~f~~a~~~~P~Ii~iD 143 (317)
.+++.|++|+|||| +++....- ..+.+. ..++.- . ..+...-...+++..+.+..|.+|++|
T Consensus 146 ~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ii~g 225 (308)
T TIGR02788 146 NIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDRIILG 225 (308)
T ss_pred EEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCeEEEe
Confidence 67899999999999 66666532 222221 111110 0 011223456778888888999999999
Q ss_pred ccc
Q psy7780 144 EID 146 (317)
Q Consensus 144 EiD 146 (317)
|+-
T Consensus 226 E~r 228 (308)
T TIGR02788 226 ELR 228 (308)
T ss_pred ccC
Confidence 985
No 432
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=93.16 E-value=0.25 Score=45.42 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=29.2
Q ss_pred CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcc
Q psy7780 137 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR 180 (317)
Q Consensus 137 P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 180 (317)
..+|++|-+-++.+..... ++.....++.+.+.+..+.++...
T Consensus 142 i~LvVVDSvaa~~r~~~~~-d~~~~~~~r~ls~~l~~L~~~a~~ 184 (279)
T COG0468 142 IDLLVVDSVAALVRAEEIE-DGHLGLRARLLSKALRKLTRLANK 184 (279)
T ss_pred CCEEEEecCcccchhhhcC-cchHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999998888765433 333455567777777777766554
No 433
>PRK04328 hypothetical protein; Provisional
Probab=93.14 E-value=0.28 Score=44.21 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=12.6
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..|++|+||||||+
T Consensus 25 ~ili~G~pGsGKT~ 38 (249)
T PRK04328 25 VVLLSGGPGTGKSI 38 (249)
T ss_pred EEEEEcCCCCCHHH
Confidence 46899999999998
No 434
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=93.13 E-value=0.076 Score=46.07 Aligned_cols=59 Identities=19% Similarity=0.248 Sum_probs=33.4
Q ss_pred HHHhhhcCCCchh---hhhhcC-CceEEEEechhhhhhhcC------------------CchHHHHHHHHHHHhhCCceE
Q psy7780 83 ELIQKYLGDGPKL---AVANQT-SATFLRVVGSELIQKYLG------------------DGPKLVRELFRVAEEHAPSIV 140 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~-~~~~~~v~~s~l~~~~~g------------------~~~~~l~~~f~~a~~~~P~Ii 140 (317)
+++.|+||+|||+ .+..++ +-.++.|+.-++...... +.......+++.|......||
T Consensus 18 ~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~~~~nii 97 (199)
T PF06414_consen 18 IIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAIENRYNII 97 (199)
T ss_dssp EEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHHCT--EE
T ss_pred EEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCEE
Confidence 4588999999999 555555 667888887665543211 112234455666666666666
Q ss_pred e
Q psy7780 141 F 141 (317)
Q Consensus 141 ~ 141 (317)
+
T Consensus 98 ~ 98 (199)
T PF06414_consen 98 F 98 (199)
T ss_dssp E
T ss_pred E
Confidence 6
No 435
>COG4128 Zot Zonula occludens toxin [General function prediction only]
Probab=93.13 E-value=0.098 Score=47.98 Aligned_cols=122 Identities=20% Similarity=0.119 Sum_probs=68.5
Q ss_pred HHhhhcCCCchh-hhhhcC------CceEEE-Eechhhh---h---hhcCC------------chHHHHHHHHHHHhhCC
Q psy7780 84 LIQKYLGDGPKL-AVANQT------SATFLR-VVGSELI---Q---KYLGD------------GPKLVRELFRVAEEHAP 137 (317)
Q Consensus 84 Ll~G~pGtGKT~-aiA~~~------~~~~~~-v~~s~l~---~---~~~g~------------~~~~l~~~f~~a~~~~P 137 (317)
+.+|+||++||+ |++..+ |..++. |-+-.+- + +-.|+ .-...+..|+.|+..
T Consensus 5 ihhG~pGSyKTsgAv~~~~iPA~ksGR~IITNVrGl~ler~~~~~pd~~~~i~I~n~D~~~~d~~~~m~~~~~wa~~g-- 82 (398)
T COG4128 5 IHHGIPGSYKTSGAVCNVIIPAFKSGRRIITNVRGLQLERITERYPDATGEIIIVNDDVLKADFFPFMGGEGSWAQFG-- 82 (398)
T ss_pred EEecCCCCcccchhHHhhhhhhhcCCcEEEEecccccHHHHHHhccCCCCceEEEeccccCcccchhhcceeeccccC--
Confidence 358999999999 777655 433332 1111111 0 00111 111222334444444
Q ss_pred ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCcc
Q psy7780 138 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPA 217 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~a 217 (317)
+.|+|||...|++++=... =|+.+|.-. -..+..||..-+.|
T Consensus 83 afl~iDE~~rifpkswre~-------------dl~~~d~p~-------------------------~~~AedRp~~~~~a 124 (398)
T COG4128 83 AFLVIDEAWRIFPKSWRES-------------DLDMTDEPK-------------------------SFIAEDRPFTHPEA 124 (398)
T ss_pred cEEEEechhhccCcccccc-------------chhhhcCch-------------------------hhhhccCCCccccc
Confidence 6999999999999862211 122222211 23355778888888
Q ss_pred ccCCCcceeEEEeCCCCHHHHHHHHHHH
Q psy7780 218 LIRPGRIDRKIEFPLPDEKTKRRIFNIH 245 (317)
Q Consensus 218 l~rpgRf~~~I~~~~P~~~~r~~Il~~~ 245 (317)
.-|...|..-|.+-.|+-......++.-
T Consensus 125 ~trHRH~~wDivlttpnis~i~~~ir~~ 152 (398)
T COG4128 125 GTRHRHISWDIVLTTPNISNIARFIRDK 152 (398)
T ss_pred ccccccccccEEEcCccHHHHHHHHHHH
Confidence 8664357777888888877776666543
No 436
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=93.12 E-value=0.19 Score=53.86 Aligned_cols=66 Identities=15% Similarity=0.124 Sum_probs=41.0
Q ss_pred HHHhhhcCCCchh------hhhhcCCceEEEEechhhhhh----hcCCchHHHHHHHHHHH-----hhCCceEeeccccc
Q psy7780 83 ELIQKYLGDGPKL------AVANQTSATFLRVVGSELIQK----YLGDGPKLVRELFRVAE-----EHAPSIVFIDEIDA 147 (317)
Q Consensus 83 ~Ll~G~pGtGKT~------aiA~~~~~~~~~v~~s~l~~~----~~g~~~~~l~~~f~~a~-----~~~P~Ii~iDEiD~ 147 (317)
.++.|+||||||+ .++...|..++-+..+....+ -.|.....|..++.... .....+|+|||+--
T Consensus 365 ~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEASM 444 (988)
T PRK13889 365 GVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEAGM 444 (988)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEECccc
Confidence 3589999999998 334455777777766544332 23444566666543211 11236999999865
Q ss_pred c
Q psy7780 148 V 148 (317)
Q Consensus 148 l 148 (317)
+
T Consensus 445 v 445 (988)
T PRK13889 445 V 445 (988)
T ss_pred C
Confidence 5
No 437
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.12 E-value=0.25 Score=49.06 Aligned_cols=69 Identities=14% Similarity=0.180 Sum_probs=43.9
Q ss_pred hHHHhhhcCCCchh---hhhh---cCCceEEEEech----hhhhh--hcC----------------------CchHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVAN---QTSATFLRVVGS----ELIQK--YLG----------------------DGPKLVRE 127 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~---~~~~~~~~v~~s----~l~~~--~~g----------------------~~~~~l~~ 127 (317)
..|+.|+||+|||+ ..+. ..|-+.++++.. ++... ..| ..+..+..
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~~~~ 344 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLEDHLQI 344 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHHHHHH
Confidence 67899999999998 2222 224455555442 22211 011 01456677
Q ss_pred HHHHHHhhCCceEeecccccccc
Q psy7780 128 LFRVAEEHAPSIVFIDEIDAVGT 150 (317)
Q Consensus 128 ~f~~a~~~~P~Ii~iDEiD~l~~ 150 (317)
+.+.+.+..|.+|+||-+..+..
T Consensus 345 i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 345 IKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHcCCCEEEEcCHHHHHH
Confidence 77778888899999999988754
No 438
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.09 E-value=0.024 Score=48.14 Aligned_cols=28 Identities=11% Similarity=0.068 Sum_probs=23.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEec
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVG 110 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~ 110 (317)
+++.|+||+|||| .++.+++.++++++.
T Consensus 5 i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~ 35 (175)
T cd00227 5 IILNGGSSAGKSSIARALQSVLAEPWLHFGV 35 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCCccccCc
Confidence 5689999999999 888888877776644
No 439
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.08 E-value=0.079 Score=44.23 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=19.7
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEEEechhhhh
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~ 115 (317)
.|.|.||||||| ++++. |.+++.=.+..+..
T Consensus 3 ~i~G~~stGKTTL~~~L~~~-g~~~v~E~ar~~~~ 36 (163)
T PF13521_consen 3 VITGGPSTGKTTLIEALAAR-GYPVVPEYAREIIE 36 (163)
T ss_dssp EEE--TTSHHHHHHHHHHHH-T-EEE--TTHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHc-CCeEEeecHHHHHH
Confidence 578999999999 77777 88877554545543
No 440
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.07 E-value=0.094 Score=48.30 Aligned_cols=30 Identities=20% Similarity=0.153 Sum_probs=21.7
Q ss_pred HHHhhhcCCCchh---hhhhcC-CceEEEEechhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQT-SATFLRVVGSELI 114 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~-~~~~~~v~~s~l~ 114 (317)
+++.|+||||||| .+++++ +..++ +.-++.
T Consensus 5 iil~G~pGSGKSTla~~L~~~~~~~~~l--~~D~~r 38 (300)
T PHA02530 5 ILTVGVPGSGKSTWAREFAAKNPKAVNV--NRDDLR 38 (300)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEE--eccHHH
Confidence 4678999999999 888887 55444 444443
No 441
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=92.99 E-value=0.092 Score=47.65 Aligned_cols=63 Identities=21% Similarity=0.332 Sum_probs=35.8
Q ss_pred hhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC
Q psy7780 134 EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET 213 (317)
Q Consensus 134 ~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~ 213 (317)
...-.+|+||-|-+++...... .+...+..+.|..++..|..+... .++.||.|..-...
T Consensus 131 ~~~ikLIVIDSIaalfr~e~~~-~~~~~~R~~~L~~~~~~L~~lA~~-------------------~~iaVvvTNqv~~~ 190 (256)
T PF08423_consen 131 ESKIKLIVIDSIAALFRSEFSG-RGDLAERQRMLARLARILKRLARK-------------------YNIAVVVTNQVTTK 190 (256)
T ss_dssp HSCEEEEEEETSSHHHHHHSGS-TTTHHHHHHHHHHHHHHHHHHHHH-------------------TT-EEEEEEEECSS
T ss_pred ccceEEEEecchHHHHHHHHcc-chhhHHHHHHHHHHHHHHHHHHHh-------------------CCceEEeeceeeec
Confidence 3445799999999998654221 122234456666666666555444 56777765544444
Q ss_pred CCc
Q psy7780 214 LDP 216 (317)
Q Consensus 214 Ld~ 216 (317)
.+.
T Consensus 191 ~~~ 193 (256)
T PF08423_consen 191 IDS 193 (256)
T ss_dssp TT-
T ss_pred CCc
Confidence 443
No 442
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=92.98 E-value=0.44 Score=44.18 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=20.3
Q ss_pred ceeEEEeCCCCHHHHHHHHHHHhcC
Q psy7780 224 IDRKIEFPLPDEKTKRRIFNIHTSR 248 (317)
Q Consensus 224 f~~~I~~~~P~~~~r~~Il~~~l~~ 248 (317)
|+..+.+|.|+..+...++...+.+
T Consensus 241 iq~~~~lP~~~~~~~~~~~~~~~~~ 265 (325)
T PF07693_consen 241 IQVPFSLPPPSPSDLERYLNELLES 265 (325)
T ss_pred cCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 6788999999998888888777544
No 443
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=92.97 E-value=0.068 Score=50.27 Aligned_cols=65 Identities=26% Similarity=0.228 Sum_probs=41.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcC-Cc-----------hHHHHHHHHHHHhhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLG-DG-----------PKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g-~~-----------~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
.+.+.|+||+|||+ .+++..+.+++.-.+.+......+ +. ...... ...+.+.++.|||+|- +
T Consensus 164 ~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~~~~~~~~~~l~~~d~~~i~~g~~~~-~~~~~~~a~~iif~D~-~ 241 (325)
T TIGR01526 164 TVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYVEEKLGGDEALQYSDYAQIALGQQRY-IDYAVRHAHKIAFIDT-D 241 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHHHHhcCCCcccCHHHHHHHHHHHHHH-HHHHHhhcCCeEEEcC-C
Confidence 45688999999999 899988998877776666654431 11 111112 2233345667999994 4
Q ss_pred cc
Q psy7780 147 AV 148 (317)
Q Consensus 147 ~l 148 (317)
.+
T Consensus 242 ~~ 243 (325)
T TIGR01526 242 FI 243 (325)
T ss_pred hH
Confidence 43
No 444
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.95 E-value=0.27 Score=41.43 Aligned_cols=20 Identities=15% Similarity=0.024 Sum_probs=15.7
Q ss_pred hHHHhhhcCCCchh---hhhhcC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~ 101 (317)
...+.||+|+|||+ +++...
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 45688999999999 666654
No 445
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=92.92 E-value=0.071 Score=55.70 Aligned_cols=66 Identities=15% Similarity=0.084 Sum_probs=39.7
Q ss_pred HHHhhhcCCCchh------hhhhcCCceEEEEechhhh----hhhcCCchHHHHHHHHHHH-----hhCCceEeeccccc
Q psy7780 83 ELIQKYLGDGPKL------AVANQTSATFLRVVGSELI----QKYLGDGPKLVRELFRVAE-----EHAPSIVFIDEIDA 147 (317)
Q Consensus 83 ~Ll~G~pGtGKT~------aiA~~~~~~~~~v~~s~l~----~~~~g~~~~~l~~~f~~a~-----~~~P~Ii~iDEiD~ 147 (317)
.++.|+||||||+ .++...|..++-+..+... ....|.....+..+..... .....+|++||+--
T Consensus 371 ~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEasM 450 (744)
T TIGR02768 371 AVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEAGM 450 (744)
T ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECccc
Confidence 4689999999998 3344557777777555433 2233443444555422111 12347999999865
Q ss_pred c
Q psy7780 148 V 148 (317)
Q Consensus 148 l 148 (317)
+
T Consensus 451 v 451 (744)
T TIGR02768 451 V 451 (744)
T ss_pred C
Confidence 5
No 446
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=92.81 E-value=0.058 Score=51.38 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=39.1
Q ss_pred hhhHHHhhhcCCCchh---hhhhcC------CceEEEEec-hhhh------------hhhcCCchHHHHHHHHHHHhhCC
Q psy7780 80 VGSELIQKYLGDGPKL---AVANQT------SATFLRVVG-SELI------------QKYLGDGPKLVRELFRVAEEHAP 137 (317)
Q Consensus 80 ~g~~Ll~G~pGtGKT~---aiA~~~------~~~~~~v~~-s~l~------------~~~~g~~~~~l~~~f~~a~~~~P 137 (317)
+|-+++.||+|+|||| +++.++ +..++.+.- .++. +..++............+....|
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~P 213 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKP 213 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCC
Confidence 4578999999999999 666554 223333311 1111 11111111234455556777889
Q ss_pred ceEeecccc
Q psy7780 138 SIVFIDEID 146 (317)
Q Consensus 138 ~Ii~iDEiD 146 (317)
.+|++.|+-
T Consensus 214 d~i~vGEiR 222 (358)
T TIGR02524 214 HAILVGEAR 222 (358)
T ss_pred CEEeeeeeC
Confidence 999999864
No 447
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.79 E-value=0.063 Score=50.26 Aligned_cols=50 Identities=24% Similarity=0.453 Sum_probs=40.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhh-hhcCCc-hHHHHHHHHHH
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ-KYLGDG-PKLVRELFRVA 132 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~-~~~g~~-~~~l~~~f~~a 132 (317)
+|.-||.|+|||- -+|.-.++||+.|.++.+.. .|+|.- +..+|++-+.|
T Consensus 53 ILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGrDVesivRDLve~a 107 (444)
T COG1220 53 ILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDVESIIRDLVEIA 107 (444)
T ss_pred eEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeecccccccHHHHHHHHHHHH
Confidence 5678999999998 89999999999999987654 466654 66777776654
No 448
>PRK14529 adenylate kinase; Provisional
Probab=92.75 E-value=0.044 Score=48.67 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=25.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYL 118 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~ 118 (317)
++|.||||+|||| .+|..++.+. ++.++++...+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~--is~gdllr~~i 39 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAH--IESGAIFREHI 39 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC--cccchhhhhhc
Confidence 3578999999999 7899988665 45566665543
No 449
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.69 E-value=0.034 Score=47.24 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=24.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEec
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVG 110 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~ 110 (317)
+++.|++|+|||+ .+|+.++++++..+.
T Consensus 7 I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 7 IFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred EEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4688999999999 999999999887764
No 450
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=92.67 E-value=0.34 Score=40.86 Aligned_cols=20 Identities=20% Similarity=0.071 Sum_probs=15.7
Q ss_pred hHHHhhhcCCCchh---hhhhcC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~ 101 (317)
...+.|+.|+|||+ +++...
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 35688999999999 666654
No 451
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.66 E-value=0.34 Score=42.37 Aligned_cols=13 Identities=15% Similarity=0.048 Sum_probs=12.0
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++.||.|+|||+
T Consensus 32 ~~l~G~n~~GKst 44 (204)
T cd03282 32 HIITGPNMSGKST 44 (204)
T ss_pred EEEECCCCCCHHH
Confidence 6789999999998
No 452
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=92.61 E-value=0.053 Score=44.83 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.5
Q ss_pred hhcCCCchh---hhhhcCCceEEEEe
Q psy7780 87 KYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 87 G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
|..|||||+ ++|+++++.|+.=+
T Consensus 2 GVsG~GKStvg~~lA~~lg~~fidGD 27 (161)
T COG3265 2 GVSGSGKSTVGSALAERLGAKFIDGD 27 (161)
T ss_pred CCCccCHHHHHHHHHHHcCCceeccc
Confidence 789999999 99999999988743
No 453
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.61 E-value=0.067 Score=50.65 Aligned_cols=65 Identities=15% Similarity=0.268 Sum_probs=41.7
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc--eEEEEec-hhhhh------------hhcCCchHHHHHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA--TFLRVVG-SELIQ------------KYLGDGPKLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~--~~~~v~~-s~l~~------------~~~g~~~~~l~~~f~~a~~~~P~Ii~iD 143 (317)
.+++.|++|+|||| +++.+... .++.+.- .++.- ...|...-...+++..+.+..|..|++.
T Consensus 164 nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~IivG 243 (344)
T PRK13851 164 TMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRILLG 243 (344)
T ss_pred eEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeEEEE
Confidence 57899999999999 77776532 2222211 11110 0012223456788888999999999998
Q ss_pred ccc
Q psy7780 144 EID 146 (317)
Q Consensus 144 EiD 146 (317)
|+-
T Consensus 244 EiR 246 (344)
T PRK13851 244 EMR 246 (344)
T ss_pred eeC
Confidence 874
No 454
>KOG1533|consensus
Probab=92.58 E-value=0.044 Score=48.68 Aligned_cols=28 Identities=11% Similarity=0.032 Sum_probs=22.7
Q ss_pred HHHhhhcCCCchh------hhhhcCCceEEEEec
Q psy7780 83 ELIQKYLGDGPKL------AVANQTSATFLRVVG 110 (317)
Q Consensus 83 ~Ll~G~pGtGKT~------aiA~~~~~~~~~v~~ 110 (317)
.++.||||+|||| .+-+++|.++..|+.
T Consensus 5 qvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNL 38 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNL 38 (290)
T ss_pred eEEEcCCCCCccchhhhHHHHHHHhCCceEEEec
Confidence 3567999999999 788888988777753
No 455
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=92.58 E-value=0.65 Score=39.73 Aligned_cols=33 Identities=9% Similarity=0.174 Sum_probs=21.9
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhc
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYL 118 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~ 118 (317)
.+.|.+|+|||+ .+++..+++++ ++-++.....
T Consensus 3 ~itG~~gsGKst~~~~l~~~~~~~~i--~~D~~~~~~~ 38 (188)
T TIGR00152 3 GLTGGIGSGKSTVANYLADKYHFPVI--DADKIAHQVV 38 (188)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCeEE--eCCHHHHHHH
Confidence 478999999999 56665556665 4445544433
No 456
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=92.49 E-value=0.43 Score=48.23 Aligned_cols=20 Identities=30% Similarity=0.190 Sum_probs=17.3
Q ss_pred hHHHhhhcCCCchh---hhhhcC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~ 101 (317)
..++.|++|||||+ |+|.-.
T Consensus 421 ~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 421 RLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999 888755
No 457
>PRK04182 cytidylate kinase; Provisional
Probab=92.37 E-value=0.04 Score=46.40 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=21.6
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
+.+.|+||+|||+ .+|..++++++.
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 3578999999999 999999988765
No 458
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.36 E-value=0.22 Score=41.21 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=36.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCc--eEEEEechhhh-------hhhcC-----CchHHHHHHHHHHHhhCCceEeeccc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSA--TFLRVVGSELI-------QKYLG-----DGPKLVRELFRVAEEHAPSIVFIDEI 145 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~--~~~~v~~s~l~-------~~~~g-----~~~~~l~~~f~~a~~~~P~Ii~iDEi 145 (317)
..+.|++|+|||+ +++..... --+.+++..+. ...++ .+...-+-.+..|-...|.++++||.
T Consensus 28 ~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ilDEp 107 (157)
T cd00267 28 VALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLDEP 107 (157)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 5688999999999 77776532 11233322111 01011 01112222355555567899999997
Q ss_pred ccc
Q psy7780 146 DAV 148 (317)
Q Consensus 146 D~l 148 (317)
..=
T Consensus 108 ~~~ 110 (157)
T cd00267 108 TSG 110 (157)
T ss_pred CcC
Confidence 643
No 459
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.32 E-value=0.22 Score=41.82 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=17.2
Q ss_pred HHHHHHHHHh----hCCceEeecccccccc
Q psy7780 125 VRELFRVAEE----HAPSIVFIDEIDAVGT 150 (317)
Q Consensus 125 l~~~f~~a~~----~~P~Ii~iDEiD~l~~ 150 (317)
.+..++.|++ ....+|+|||+-....
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~ 109 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALG 109 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhh
Confidence 4445555543 3468999999987654
No 460
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=92.25 E-value=0.084 Score=49.23 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=24.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEe
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
.+.+.|+||||||+ .+|+.+|++|+.++
T Consensus 135 ~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 135 RIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 35688999999999 99999999999543
No 461
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.25 E-value=0.096 Score=49.11 Aligned_cols=65 Identities=15% Similarity=0.233 Sum_probs=41.4
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEe-chhhhh---h---hcCCchHHHHHHHHHHHhhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVV-GSELIQ---K---YLGDGPKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~-~s~l~~---~---~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
..++.|++|+|||+ +++.+. ...++.+. ..++.- . +....+....+++..+.+..|..|++.|+-
T Consensus 150 ~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGEiR 229 (319)
T PRK13894 150 NILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGEVR 229 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEeccC
Confidence 56889999999999 666542 12333332 122210 0 111223457788889999999999999974
No 462
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=92.24 E-value=0.096 Score=52.75 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=25.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEec
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVG 110 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~ 110 (317)
.+.|.|+||+|||+ .+|+.++++|+.++-
T Consensus 8 ~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 8 QAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 35678999999999 999999999998863
No 463
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.20 E-value=0.18 Score=43.13 Aligned_cols=64 Identities=22% Similarity=0.104 Sum_probs=34.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCc--eEEEEechhh--hhhh--cCCchHHHHHHHHHHHhhCCceEeeccccc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSA--TFLRVVGSEL--IQKY--LGDGPKLVRELFRVAEEHAPSIVFIDEIDA 147 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~--~~~~v~~s~l--~~~~--~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~ 147 (317)
..+.|+.|+|||| .++..... --+.+++..+ .... ... ...-+-.+..|-...|.++++||--.
T Consensus 28 ~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSg-Gq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 28 IGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSG-GELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred EEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCH-HHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 4578999999999 66665421 1122222110 0000 111 11233345556667799999999643
No 464
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=92.17 E-value=0.27 Score=44.01 Aligned_cols=62 Identities=23% Similarity=0.266 Sum_probs=32.3
Q ss_pred HHHhhhcCCCchh--------hhhhcCCce--------------EEEEechh-hhh--hhcCCchHHHHHHHHHHHhhCC
Q psy7780 83 ELIQKYLGDGPKL--------AVANQTSAT--------------FLRVVGSE-LIQ--KYLGDGPKLVRELFRVAEEHAP 137 (317)
Q Consensus 83 ~Ll~G~pGtGKT~--------aiA~~~~~~--------------~~~v~~s~-l~~--~~~g~~~~~l~~~f~~a~~~~P 137 (317)
.++.||...|||+ ++-.++|+. +.++...+ +.. .....--+.+..+++.+.+ .
T Consensus 46 ~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~--~ 123 (235)
T PF00488_consen 46 IIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATE--K 123 (235)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--T--T
T ss_pred EEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhccc--c
Confidence 5799999999998 333345531 12222111 110 0111113456677776654 4
Q ss_pred ceEeecccc
Q psy7780 138 SIVFIDEID 146 (317)
Q Consensus 138 ~Ii~iDEiD 146 (317)
++|+|||+-
T Consensus 124 sLvliDE~g 132 (235)
T PF00488_consen 124 SLVLIDELG 132 (235)
T ss_dssp EEEEEESTT
T ss_pred eeeeccccc
Confidence 799999985
No 465
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.16 E-value=0.087 Score=49.44 Aligned_cols=64 Identities=14% Similarity=0.187 Sum_probs=41.2
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEe-chhhhhh------hcCCchHHHHHHHHHHHhhCCceEeeccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVV-GSELIQK------YLGDGPKLVRELFRVAEEHAPSIVFIDEI 145 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~-~s~l~~~------~~g~~~~~l~~~f~~a~~~~P~Ii~iDEi 145 (317)
.+++.|++|+|||| +++.+. +..++.+. ..++.-. +.........+++..|.+..|..|++.|+
T Consensus 146 nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 56899999999999 666654 22334332 2222210 11122335777888888999999999887
No 466
>PRK14527 adenylate kinase; Provisional
Probab=92.08 E-value=0.03 Score=48.17 Aligned_cols=32 Identities=9% Similarity=0.219 Sum_probs=23.6
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
+++.||||+|||+ .+|+.++.. .++..+++..
T Consensus 9 i~i~G~pGsGKsT~a~~La~~~~~~--~is~gd~~r~ 43 (191)
T PRK14527 9 VIFLGPPGAGKGTQAERLAQELGLK--KLSTGDILRD 43 (191)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC--CCCccHHHHH
Confidence 5689999999999 788888764 4445555543
No 467
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.89 E-value=0.92 Score=47.32 Aligned_cols=148 Identities=19% Similarity=0.275 Sum_probs=81.8
Q ss_pred HHHhhhcCCCchhhh-------hhcCCceEEEEechhh-----h-------hhhcC---Cc-------------hHHHHH
Q psy7780 83 ELIQKYLGDGPKLAV-------ANQTSATFLRVVGSEL-----I-------QKYLG---DG-------------PKLVRE 127 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ai-------A~~~~~~~~~v~~s~l-----~-------~~~~g---~~-------------~~~l~~ 127 (317)
.+|..|.|.||||.+ +...++-++.++.++- + +.+.. +. ...+..
T Consensus 40 ~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~ 119 (894)
T COG2909 40 ILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSS 119 (894)
T ss_pred EEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHH
Confidence 578999999999922 2233456777765431 1 11111 11 224455
Q ss_pred HHHH-HHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEE
Q psy7780 128 LFRV-AEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIM 206 (317)
Q Consensus 128 ~f~~-a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~ 206 (317)
+|.. +....|+.++|||.+.+-.. .+...+..|++. .|.++.+|.
T Consensus 120 L~~Ela~~~~pl~LVlDDyHli~~~----------~l~~~l~fLl~~------------------------~P~~l~lvv 165 (894)
T COG2909 120 LLNELASYEGPLYLVLDDYHLISDP----------ALHEALRFLLKH------------------------APENLTLVV 165 (894)
T ss_pred HHHHHHhhcCceEEEeccccccCcc----------cHHHHHHHHHHh------------------------CCCCeEEEE
Confidence 5554 34556999999999987432 244555566554 237788888
Q ss_pred EcCCCCCCCccccCCCcceeEEEeC----CCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCC
Q psy7780 207 ATNRIETLDPALIRPGRIDRKIEFP----LPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLS 268 (317)
Q Consensus 207 tTN~~~~Ld~al~rpgRf~~~I~~~----~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s 268 (317)
+|...-.+.-+=+|-. +..++++ ..+.++-.+++....+ .++ +..++..+-..|+|+.
T Consensus 166 ~SR~rP~l~la~lRlr--~~llEi~~~~Lrf~~eE~~~fl~~~~~-l~L-d~~~~~~L~~~teGW~ 227 (894)
T COG2909 166 TSRSRPQLGLARLRLR--DELLEIGSEELRFDTEEAAAFLNDRGS-LPL-DAADLKALYDRTEGWA 227 (894)
T ss_pred EeccCCCCcccceeeh--hhHHhcChHhhcCChHHHHHHHHHcCC-CCC-ChHHHHHHHhhcccHH
Confidence 8854322222222100 2233333 2367888888877652 222 2334666666777753
No 468
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.86 E-value=0.51 Score=41.77 Aligned_cols=14 Identities=7% Similarity=-0.135 Sum_probs=12.3
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.||.|.|||+
T Consensus 32 ~~~itG~n~~gKs~ 45 (218)
T cd03286 32 ILVLTGPNMGGKST 45 (218)
T ss_pred EEEEECCCCCchHH
Confidence 35799999999997
No 469
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=91.85 E-value=0.64 Score=44.58 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=12.7
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..|+.|.||||||+
T Consensus 12 TLLIKG~PGTGKTt 25 (484)
T PF07088_consen 12 TLLIKGEPGTGKTT 25 (484)
T ss_pred EEEEecCCCCCcee
Confidence 56889999999998
No 470
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.84 E-value=0.067 Score=52.52 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=38.2
Q ss_pred hhHHHhhhcCCCchh---hhhhcCCce---EEEEe------chhhhhhhcCCc-hHHHHHHHHHHHhhCCceEeeccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTSAT---FLRVV------GSELIQKYLGDG-PKLVRELFRVAEEHAPSIVFIDEIDA 147 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~~~---~~~v~------~s~l~~~~~g~~-~~~l~~~f~~a~~~~P~Ii~iDEiD~ 147 (317)
|.+|+.||.|+|||+ ++.++++.+ ++.+. -+.+.+-.+.+. .-.....++...++.|.||.+.||-.
T Consensus 259 GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 259 GLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCC
Confidence 367999999999999 555555543 33331 111211111110 11223344445568899999999854
No 471
>PRK10436 hypothetical protein; Provisional
Probab=91.83 E-value=0.12 Score=51.01 Aligned_cols=66 Identities=17% Similarity=0.268 Sum_probs=41.0
Q ss_pred hhHHHhhhcCCCchh---hhhhcC---CceEEEEec-hhh-----hhhhcCC-chHHHHHHHHHHHhhCCceEeecccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT---SATFLRVVG-SEL-----IQKYLGD-GPKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~-s~l-----~~~~~g~-~~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
|.+|+.||.|+|||| ++.+++ +.+++.+.- -+. .+..++. ...........+.++.|.||++.|+-
T Consensus 219 GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 219 GLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred CeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 468999999999999 433444 344555421 121 1111221 12345666677778899999999975
No 472
>PRK13975 thymidylate kinase; Provisional
Probab=91.69 E-value=0.083 Score=45.37 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=19.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATF 105 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~ 105 (317)
+.|.|++|+|||| .+|+.++..+
T Consensus 5 I~ieG~~GsGKtT~~~~L~~~l~~~~ 30 (196)
T PRK13975 5 IVFEGIDGSGKTTQAKLLAEKLNAFW 30 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 4578999999999 9999988644
No 473
>PLN02459 probable adenylate kinase
Probab=91.67 E-value=0.095 Score=47.60 Aligned_cols=32 Identities=9% Similarity=0.151 Sum_probs=24.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
++|.||||+|||+ .+|+.+++ .+++.++++..
T Consensus 32 ii~~G~PGsGK~T~a~~la~~~~~--~~is~gdllR~ 66 (261)
T PLN02459 32 WVFLGCPGVGKGTYASRLSKLLGV--PHIATGDLVRE 66 (261)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC--cEEeCcHHHHH
Confidence 4567999999999 88888774 55666676654
No 474
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=91.57 E-value=4.2 Score=37.15 Aligned_cols=73 Identities=22% Similarity=0.252 Sum_probs=47.3
Q ss_pred eEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHH
Q psy7780 226 RKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKES 302 (317)
Q Consensus 226 ~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~ 302 (317)
..+.++.|+..+...+++..+++.+.. +...+..++..+.| |+..+.++.-..++-.+...||.+|+++.+..
T Consensus 104 ~~i~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~----d~~~l~~el~KL~~~~~~~~It~e~I~~~~~~ 177 (302)
T TIGR01128 104 QIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEG----NLLAIAQELEKLALYAPDGKITLEDVEEAVSD 177 (302)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCc----HHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhh
Confidence 478889999999999999988876654 33345566666443 55555444433333333346899998877653
No 475
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=91.56 E-value=0.19 Score=48.69 Aligned_cols=33 Identities=21% Similarity=0.109 Sum_probs=25.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELI 114 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~ 114 (317)
-+.+.|++|||||| ++|+..|..++.--+-+..
T Consensus 221 ~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~ 256 (399)
T PRK08099 221 TVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYV 256 (399)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHH
Confidence 45688999999999 9999988876665444444
No 476
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=91.50 E-value=0.15 Score=44.23 Aligned_cols=30 Identities=17% Similarity=0.150 Sum_probs=19.0
Q ss_pred hHHHhhhcCCCchh-------hhhhc---CCceEEEEech
Q psy7780 82 SELIQKYLGDGPKL-------AVANQ---TSATFLRVVGS 111 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~-------aiA~~---~~~~~~~v~~s 111 (317)
+.|+.|.+|+|||+ .++.. -...++-+++.
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 68999999999998 33332 24577777654
No 477
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=91.48 E-value=0.12 Score=52.39 Aligned_cols=67 Identities=16% Similarity=0.191 Sum_probs=41.2
Q ss_pred hhHHHhhhcCCCchh---hhhhcCC---ceEEEEech------hhhhhhcC-CchHHHHHHHHHHHhhCCceEeeccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTS---ATFLRVVGS------ELIQKYLG-DGPKLVRELFRVAEEHAPSIVFIDEIDA 147 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~---~~~~~v~~s------~l~~~~~g-~~~~~l~~~f~~a~~~~P~Ii~iDEiD~ 147 (317)
|.+|+.||+|+|||| ++.++++ .+++.+.-+ .+.+..+. +...........+.++.|.||++.|+-.
T Consensus 317 Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd 396 (564)
T TIGR02538 317 GMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRD 396 (564)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecCCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCCC
Confidence 467899999999998 4444443 345544221 11111111 1123456667777888999999999854
No 478
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=91.48 E-value=0.058 Score=45.04 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=21.6
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+.+.|+||+|||+ .+|+.++++++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 3578999999999 8999999886653
No 479
>KOG1802|consensus
Probab=91.47 E-value=0.08 Score=53.39 Aligned_cols=31 Identities=29% Similarity=0.358 Sum_probs=24.8
Q ss_pred HHHhhhcCCCchh-------hhhhcCCceEEEEechhh
Q psy7780 83 ELIQKYLGDGPKL-------AVANQTSATFLRVVGSEL 113 (317)
Q Consensus 83 ~Ll~G~pGtGKT~-------aiA~~~~~~~~~v~~s~l 113 (317)
-|+.||||||||. .++...+.++..+.+|.+
T Consensus 428 sLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNi 465 (935)
T KOG1802|consen 428 SLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNI 465 (935)
T ss_pred eeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccch
Confidence 4799999999997 667777778888777654
No 480
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=91.46 E-value=0.11 Score=51.62 Aligned_cols=67 Identities=21% Similarity=0.218 Sum_probs=39.3
Q ss_pred hhHHHhhhcCCCchh---hhhhcCC---ceEEEEec-hhhh-----hhhcCC-chHHHHHHHHHHHhhCCceEeeccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTS---ATFLRVVG-SELI-----QKYLGD-GPKLVRELFRVAEEHAPSIVFIDEIDA 147 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~---~~~~~v~~-s~l~-----~~~~g~-~~~~l~~~f~~a~~~~P~Ii~iDEiD~ 147 (317)
|-+++.||+|+|||| ++.+++. .+++.+.- .+.. +..+.. ...........+.++.|.||++.|+-.
T Consensus 243 GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 243 GIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred CEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeecCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 357899999999999 4445543 34555422 1111 111111 112344555566778899999999853
No 481
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=91.46 E-value=0.56 Score=41.35 Aligned_cols=13 Identities=23% Similarity=-0.023 Sum_probs=12.0
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++.||.|+|||+
T Consensus 33 ~~l~Gpn~sGKst 45 (216)
T cd03284 33 LLITGPNMAGKST 45 (216)
T ss_pred EEEECCCCCChHH
Confidence 5789999999998
No 482
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=91.42 E-value=0.32 Score=42.35 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=11.8
Q ss_pred CCCCccccCCCcceeEEEeCCCCHH
Q psy7780 212 ETLDPALIRPGRIDRKIEFPLPDEK 236 (317)
Q Consensus 212 ~~Ld~al~rpgRf~~~I~~~~P~~~ 236 (317)
+.+|..+++ +-|.+..+..|-.+
T Consensus 145 EtVPD~~l~--~Adev~lVDi~Pe~ 167 (211)
T PF02702_consen 145 ETVPDSVLD--RADEVELVDITPEE 167 (211)
T ss_dssp S-B-HHHHH--T-SCEEEB---HHH
T ss_pred eeCCHHHHh--hcCeEEEecCCHHH
Confidence 447778887 77877777766543
No 483
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=91.40 E-value=0.1 Score=43.93 Aligned_cols=21 Identities=38% Similarity=0.471 Sum_probs=17.8
Q ss_pred hhcCCCchh---hhhhcCCceEEE
Q psy7780 87 KYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 87 G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
|+||||||+ +++..++..++.
T Consensus 2 G~sGsGKSTla~~la~~l~~~~~~ 25 (163)
T PRK11545 2 GVSGSGKSAVASEVAHQLHAAFLD 25 (163)
T ss_pred CCCCCcHHHHHHHHHHHhCCeEEe
Confidence 899999999 889999875554
No 484
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=91.28 E-value=0.31 Score=52.76 Aligned_cols=66 Identities=12% Similarity=0.090 Sum_probs=40.0
Q ss_pred HHHhhhcCCCchh------hhhhcCCceEEEEechhh----hhhhcCCchHHHHHHH-HHHH----hhCCceEeeccccc
Q psy7780 83 ELIQKYLGDGPKL------AVANQTSATFLRVVGSEL----IQKYLGDGPKLVRELF-RVAE----EHAPSIVFIDEIDA 147 (317)
Q Consensus 83 ~Ll~G~pGtGKT~------aiA~~~~~~~~~v~~s~l----~~~~~g~~~~~l~~~f-~~a~----~~~P~Ii~iDEiD~ 147 (317)
.++.|++|||||+ .+++..|..++-+..+.- +....|.....|..+. .... .....+|+|||+--
T Consensus 400 ~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~Gi~a~TIas~ll~~~~~~~~l~~~~vlVIDEAsM 479 (1102)
T PRK13826 400 AAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTLSSWELRWNQGRDQLDNKTVFVLDEAGM 479 (1102)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHhhCCCeeeHHHHHhhhccCccCCCCCcEEEEECccc
Confidence 5689999999999 334466878777755432 2233444445555532 2111 11246999999875
Q ss_pred c
Q psy7780 148 V 148 (317)
Q Consensus 148 l 148 (317)
+
T Consensus 480 v 480 (1102)
T PRK13826 480 V 480 (1102)
T ss_pred C
Confidence 5
No 485
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=91.27 E-value=0.88 Score=46.41 Aligned_cols=49 Identities=14% Similarity=0.224 Sum_probs=33.8
Q ss_pred HHHhCCCCCHHHHHHHHHHHH-HHHHHhcCCCcCHHHHHHHHHHHHhhhc
Q psy7780 260 LIMAKDDLSGADIKAICTEAG-LMALRERRMKVTNEDFKKSKESVLYRKK 308 (317)
Q Consensus 260 ia~~t~g~s~~dl~~l~~~A~-~~a~~~~~~~it~~d~~~al~~v~~~~~ 308 (317)
......+++.+|..++-+... +.-+---...++.+|++++++-.+..++
T Consensus 396 ~~~l~~~~~~RD~~aV~kt~SgllKLl~P~~~~~~ee~e~~l~~Ale~Rr 445 (675)
T TIGR02653 396 FFKLGNNLNQRDVIAVRKTVSGLLKLLYPDGEYTKDDVRECLTYAMEGRR 445 (675)
T ss_pred hEecCCCCchhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 334457899999988876543 2223234567999999999988776653
No 486
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=91.13 E-value=0.061 Score=43.31 Aligned_cols=18 Identities=17% Similarity=0.414 Sum_probs=15.2
Q ss_pred HHhhhcCCCchh---hhhhcC
Q psy7780 84 LIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~ 101 (317)
-|+|+||||||. .||+.+
T Consensus 57 SfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 57 SFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred EeecCCCCcHHHHHHHHHHHH
Confidence 489999999998 777763
No 487
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=91.13 E-value=0.042 Score=46.29 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=18.5
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhh
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSEL 113 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l 113 (317)
..+++|+||+|||+ ++...+ +.-++.+++...
T Consensus 26 ~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 26 NLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 46799999999998 333333 222777776654
No 488
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=91.01 E-value=1.1 Score=39.04 Aligned_cols=87 Identities=15% Similarity=0.188 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHhhC-CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCC
Q psy7780 122 PKLVRELFRVAEEHA-PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPG 200 (317)
Q Consensus 122 ~~~l~~~f~~a~~~~-P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (317)
-..+|++.+.+.... ..-++|+++|.+... ..+.|...|++ - |.
T Consensus 39 Vd~iReii~~~~~~~~~~k~iI~~a~~l~~~-----------A~NaLLK~LEE---P---------------------p~ 83 (206)
T PRK08485 39 IEDAKEVIAEAYIAESEEKIIVIAAPSYGIE-----------AQNALLKILEE---P---------------------PK 83 (206)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEEchHhhCHH-----------HHHHHHHHhcC---C---------------------CC
Confidence 456777777665332 233557888877422 23344444443 2 26
Q ss_pred CeEEEEEcCCCCCCCccccCCCccee------------EEEeCCCCHHHHHHHHHHH
Q psy7780 201 DVKVIMATNRIETLDPALIRPGRIDR------------KIEFPLPDEKTKRRIFNIH 245 (317)
Q Consensus 201 ~v~vI~tTN~~~~Ld~al~rpgRf~~------------~I~~~~P~~~~r~~Il~~~ 245 (317)
++++|.+|+.+..+.|.+++ |+.. .+.+...+.++..+.++.+
T Consensus 84 ~~~fiL~t~~~~~llpTI~S--Rc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~~ 138 (206)
T PRK08485 84 NICFIIVAKSKNLLLPTIRS--RLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKEL 138 (206)
T ss_pred CeEEEEEeCChHhCchHHHh--hheeccccccccccccccccCCCCHHHHHHHHHHH
Confidence 78889999999999999999 8863 4677788888888888773
No 489
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=90.98 E-value=0.86 Score=38.22 Aligned_cols=20 Identities=30% Similarity=0.189 Sum_probs=15.7
Q ss_pred hHHHhhhcCCCchh---hhhhcC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~ 101 (317)
...+.|+.|+|||+ +++...
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 45688999999999 666654
No 490
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=90.98 E-value=0.17 Score=45.75 Aligned_cols=29 Identities=24% Similarity=0.226 Sum_probs=22.1
Q ss_pred hHHHhhhcCCCchh-------hhhhcCCceEEEEech
Q psy7780 82 SELIQKYLGDGPKL-------AVANQTSATFLRVVGS 111 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~-------aiA~~~~~~~~~v~~s 111 (317)
..|++|+||||||+ ..|.+ |-+.+.++..
T Consensus 25 ~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~~ 60 (260)
T COG0467 25 VVLITGPPGTGKTIFALQFLYEGARE-GEPVLYVSTE 60 (260)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhc-CCcEEEEEec
Confidence 57899999999998 34444 7778887654
No 491
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=90.97 E-value=0.43 Score=47.60 Aligned_cols=69 Identities=28% Similarity=0.275 Sum_probs=40.6
Q ss_pred hHHHhhhcCCCchh---hhhh---cCCceEEEEechh----hhhh--hcC----------------------CchHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVAN---QTSATFLRVVGSE----LIQK--YLG----------------------DGPKLVRE 127 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~---~~~~~~~~v~~s~----l~~~--~~g----------------------~~~~~l~~ 127 (317)
..+++|+||+|||+ .++. ..|-..++++..+ +... ..| ..+..+..
T Consensus 275 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~ 354 (509)
T PRK09302 275 IILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGLEDHLII 354 (509)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCHHHHHHH
Confidence 56789999999998 2222 2355555554421 1110 000 01233444
Q ss_pred HHHHHHhhCCceEeecccccccc
Q psy7780 128 LFRVAEEHAPSIVFIDEIDAVGT 150 (317)
Q Consensus 128 ~f~~a~~~~P~Ii~iDEiD~l~~ 150 (317)
+-+...+..|.+|+||-+..+..
T Consensus 355 i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 355 IKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHcCCCEEEEcCHHHHHH
Confidence 45555667889999999998864
No 492
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.85 E-value=0.44 Score=46.03 Aligned_cols=66 Identities=17% Similarity=0.108 Sum_probs=37.1
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEec--hh-----hhhhh---------cCCchHHHHHHHHHHHhh-CCc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVG--SE-----LIQKY---------LGDGPKLVRELFRVAEEH-APS 138 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~--s~-----l~~~~---------~g~~~~~l~~~f~~a~~~-~P~ 138 (317)
.++|.||+|+|||| .+|..+ +..+..+++ .. -...| ....+..+.+....++.. .-.
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~D 322 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVD 322 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCC
Confidence 56799999999999 444433 333333333 11 11111 134456666666666542 347
Q ss_pred eEeeccccc
Q psy7780 139 IVFIDEIDA 147 (317)
Q Consensus 139 Ii~iDEiD~ 147 (317)
+||||-...
T Consensus 323 vVLIDTaGR 331 (436)
T PRK11889 323 YILIDTAGK 331 (436)
T ss_pred EEEEeCccc
Confidence 899986543
No 493
>PRK00889 adenylylsulfate kinase; Provisional
Probab=90.78 E-value=0.29 Score=41.28 Aligned_cols=31 Identities=16% Similarity=0.168 Sum_probs=21.6
Q ss_pred HHHhhhcCCCchh---hhhhcC---CceEEEEechhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQT---SATFLRVVGSEL 113 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l 113 (317)
+.+.|+||+|||+ ++|..+ +..+..+++-.+
T Consensus 7 i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 7 VWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 4578999999999 666665 445666665443
No 494
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=90.76 E-value=0.49 Score=49.81 Aligned_cols=14 Identities=14% Similarity=0.043 Sum_probs=12.3
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.||.+.|||+
T Consensus 329 ~~iITGpN~gGKTt 342 (782)
T PRK00409 329 VLVITGPNTGGKTV 342 (782)
T ss_pred EEEEECCCCCCcHH
Confidence 36789999999997
No 495
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.73 E-value=0.83 Score=44.61 Aligned_cols=14 Identities=14% Similarity=0.007 Sum_probs=12.8
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
.++|.||+|+||||
T Consensus 223 ~i~~vGptGvGKTT 236 (424)
T PRK05703 223 VVALVGPTGVGKTT 236 (424)
T ss_pred EEEEECCCCCCHHH
Confidence 57889999999998
No 496
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=90.72 E-value=0.083 Score=44.06 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=23.5
Q ss_pred cCCCchh---hhhhcCCceEEEEechhhhhhhcC
Q psy7780 89 LGDGPKL---AVANQTSATFLRVVGSELIQKYLG 119 (317)
Q Consensus 89 pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g 119 (317)
||+|||+ .+|..++++|+.++- ++....|
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~--~i~~~~g 32 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDD--EIEERTG 32 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHH--HHHHHHT
T ss_pred CCCcHHHHHHHHHHHhCCCccccCH--HHHHHhC
Confidence 7999999 999999999998764 4444455
No 497
>PRK08233 hypothetical protein; Provisional
Probab=90.72 E-value=0.096 Score=44.18 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=19.6
Q ss_pred HHHhhhcCCCchh---hhhhcCC-ceEEEEe
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS-ATFLRVV 109 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~-~~~~~v~ 109 (317)
+.+.|+||+|||| .+|.+++ ..++..+
T Consensus 6 I~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 6 ITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred EEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 3467999999999 7888775 4444443
No 498
>KOG1803|consensus
Probab=90.71 E-value=0.1 Score=52.06 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=20.1
Q ss_pred hHHHhhhcCCCchh----hhhhc--CCceEEEEechh
Q psy7780 82 SELIQKYLGDGPKL----AVANQ--TSATFLRVVGSE 112 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----aiA~~--~~~~~~~v~~s~ 112 (317)
+.+++||||||||. .|.+. .+..++.+-++.
T Consensus 203 l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn 239 (649)
T KOG1803|consen 203 LLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSN 239 (649)
T ss_pred ceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCch
Confidence 67899999999998 22222 244555554443
No 499
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=90.70 E-value=0.17 Score=46.48 Aligned_cols=14 Identities=14% Similarity=-0.012 Sum_probs=12.7
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
.++|.||+|+||||
T Consensus 196 vi~~vGptGvGKTT 209 (282)
T TIGR03499 196 VIALVGPTGVGKTT 209 (282)
T ss_pred EEEEECCCCCCHHH
Confidence 57789999999999
No 500
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=90.69 E-value=6.6 Score=35.62 Aligned_cols=91 Identities=11% Similarity=-0.011 Sum_probs=48.3
Q ss_pred EEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q psy7780 206 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 206 ~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~ 285 (317)
+.==-|..+++..+.+.-|.. .+-.++++.-+.=|....+..... --....++. -.+++.+-......|-.
T Consensus 193 GvHlVPg~i~~~~~~~n~~~~--~l~i~dee~Hr~RF~~R~~~t~~~--rp~~Ryl~y-----f~EiR~I~Dyl~~~Are 263 (299)
T COG2074 193 GVHLVPGLIKEEALGNNVFMF--MLYIADEELHRERFYDRIRYTHAS--RPGGRYLEY-----FKEIRTIHDYLVERARE 263 (299)
T ss_pred eeeeccccccHhhhccceEEE--EEEeCCHHHHHHHHHHHHHHHhcc--CchhHHHHH-----HHHHHHHHHHHHHHHHh
Confidence 333447888877763333433 444455544433332222111001 111222222 23555555555566666
Q ss_pred hcCCCcCHHHHHHHHHHHHh
Q psy7780 286 ERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 286 ~~~~~it~~d~~~al~~v~~ 305 (317)
.+-+.+..+|+.+++.+++.
T Consensus 264 ~gVPvI~n~di~etv~~il~ 283 (299)
T COG2074 264 HGVPVIENDDIDETVDRILE 283 (299)
T ss_pred cCCCeeccccHHHHHHHHHH
Confidence 67788999999999888875
Done!