Query psy7780
Match_columns 317
No_of_seqs 288 out of 2380
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 18:42:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7780.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7780hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_I 26S protease regulatory 100.0 3.3E-68 1.1E-72 506.1 27.0 298 1-317 104-437 (437)
2 4b4t_J 26S protease regulatory 100.0 1.8E-66 6.3E-71 492.7 27.4 290 2-310 71-396 (405)
3 4b4t_L 26S protease subunit RP 100.0 1.3E-63 4.5E-68 479.5 26.6 289 2-309 104-428 (437)
4 4b4t_K 26S protease regulatory 100.0 4.6E-63 1.6E-67 475.0 25.2 296 2-316 95-427 (428)
5 4b4t_H 26S protease regulatory 100.0 4.7E-63 1.6E-67 474.8 24.0 281 11-310 141-457 (467)
6 4b4t_M 26S protease regulatory 100.0 1E-62 3.4E-67 473.0 22.5 282 14-316 116-433 (434)
7 3cf2_A TER ATPase, transitiona 100.0 8.1E-47 2.8E-51 385.7 5.1 205 82-305 513-745 (806)
8 3cf2_A TER ATPase, transitiona 100.0 2.5E-42 8.7E-47 352.6 15.9 212 72-305 199-461 (806)
9 2ce7_A Cell division protein F 100.0 7.6E-38 2.6E-42 304.4 18.6 205 82-305 51-258 (476)
10 2x8a_A Nuclear valosin-contain 100.0 2.4E-38 8.3E-43 288.5 13.7 202 82-305 46-266 (274)
11 3cf0_A Transitional endoplasmi 100.0 4.2E-38 1.4E-42 290.4 15.1 204 82-304 51-282 (301)
12 3h4m_A Proteasome-activating n 100.0 1.3E-36 4.5E-41 277.0 20.6 209 82-309 53-264 (285)
13 1lv7_A FTSH; alpha/beta domain 100.0 2.4E-36 8.3E-41 271.7 20.8 206 82-306 47-255 (257)
14 1xwi_A SKD1 protein; VPS4B, AA 100.0 2.4E-36 8.1E-41 281.4 16.7 182 82-286 47-233 (322)
15 3eie_A Vacuolar protein sortin 100.0 2.5E-36 8.7E-41 280.9 11.5 200 82-304 53-299 (322)
16 2dhr_A FTSH; AAA+ protein, hex 100.0 1.5E-35 5.2E-40 289.8 14.6 206 82-306 66-274 (499)
17 1ixz_A ATP-dependent metallopr 100.0 2.6E-34 8.9E-39 258.0 18.0 199 83-300 52-253 (254)
18 2qp9_X Vacuolar protein sortin 100.0 7.9E-35 2.7E-39 274.5 15.3 200 82-304 86-332 (355)
19 2qz4_A Paraplegin; AAA+, SPG7, 100.0 4.5E-35 1.5E-39 263.0 10.7 208 82-308 41-254 (262)
20 3hu3_A Transitional endoplasmi 100.0 7.8E-34 2.7E-38 277.8 18.7 203 83-307 241-463 (489)
21 2zan_A Vacuolar protein sortin 100.0 5E-34 1.7E-38 276.6 12.9 182 82-286 169-355 (444)
22 1iy2_A ATP-dependent metallopr 100.0 1.4E-32 4.7E-37 250.3 18.4 199 83-300 76-277 (278)
23 1ypw_A Transitional endoplasmi 100.0 2.3E-35 7.8E-40 304.5 -6.0 187 82-287 513-702 (806)
24 2r62_A Cell division protease 100.0 5.1E-35 1.7E-39 264.3 -4.2 210 82-309 46-259 (268)
25 3d8b_A Fidgetin-like protein 1 100.0 1.6E-31 5.3E-36 252.1 16.1 202 82-305 119-336 (357)
26 3b9p_A CG5977-PA, isoform A; A 100.0 2.1E-31 7.1E-36 244.1 12.8 202 82-304 56-273 (297)
27 3vfd_A Spastin; ATPase, microt 100.0 7.1E-31 2.4E-35 250.2 14.0 201 82-304 150-366 (389)
28 3t15_A Ribulose bisphosphate c 100.0 1.5E-28 5.1E-33 225.7 9.9 178 82-274 38-222 (293)
29 1ypw_A Transitional endoplasmi 99.9 5.2E-27 1.8E-31 242.2 18.9 201 82-304 240-460 (806)
30 2c9o_A RUVB-like 1; hexameric 99.9 1.3E-26 4.3E-31 225.3 -12.6 168 82-278 65-262 (456)
31 3uk6_A RUVB-like 2; hexameric 99.8 9.9E-21 3.4E-25 177.8 11.2 185 82-304 72-331 (368)
32 3syl_A Protein CBBX; photosynt 99.8 4.7E-21 1.6E-25 175.8 8.0 186 82-298 69-281 (309)
33 3pfi_A Holliday junction ATP-d 99.8 1.5E-19 5.2E-24 168.0 13.1 194 82-303 57-254 (338)
34 3m6a_A ATP-dependent protease 99.8 2.9E-20 9.8E-25 184.2 3.3 203 82-304 110-342 (543)
35 1d2n_A N-ethylmaleimide-sensit 99.8 1.6E-19 5.5E-24 163.2 6.2 185 82-302 66-263 (272)
36 1ofh_A ATP-dependent HSL prote 99.8 6.9E-19 2.4E-23 160.8 10.2 208 82-304 52-300 (310)
37 3hws_A ATP-dependent CLP prote 99.8 1.3E-18 4.4E-23 163.8 9.0 218 81-300 52-346 (363)
38 1hqc_A RUVB; extended AAA-ATPa 99.8 2.6E-18 8.9E-23 158.4 10.7 193 82-303 40-238 (324)
39 2v1u_A Cell division control p 99.7 1.1E-17 3.6E-22 157.2 13.3 193 81-305 45-278 (387)
40 1g41_A Heat shock protein HSLU 99.7 2.8E-19 9.6E-24 171.9 1.4 132 81-243 51-189 (444)
41 3pvs_A Replication-associated 99.7 4.3E-18 1.5E-22 164.7 8.9 174 82-303 52-244 (447)
42 2r44_A Uncharacterized protein 99.7 5.4E-18 1.9E-22 157.3 8.5 196 81-308 47-302 (331)
43 2z4s_A Chromosomal replication 99.7 6.3E-18 2.2E-22 163.3 8.7 188 82-304 132-333 (440)
44 1g8p_A Magnesium-chelatase 38 99.7 3E-17 1E-21 152.8 12.3 147 137-309 145-328 (350)
45 1r6b_X CLPA protein; AAA+, N-t 99.7 6.4E-18 2.2E-22 173.5 6.0 191 82-304 209-434 (758)
46 2chg_A Replication factor C sm 99.7 3.9E-17 1.3E-21 140.9 9.8 170 82-301 40-224 (226)
47 1l8q_A Chromosomal replication 99.7 3.1E-17 1.1E-21 151.8 8.7 186 81-303 38-240 (324)
48 3pxg_A Negative regulator of g 99.7 1.1E-17 3.8E-22 162.9 5.6 176 82-304 203-407 (468)
49 1jbk_A CLPB protein; beta barr 99.7 6.9E-18 2.3E-22 142.3 1.7 129 82-242 45-194 (195)
50 3bos_A Putative DNA replicatio 99.7 1.1E-16 3.7E-21 140.4 8.5 176 81-301 53-241 (242)
51 3kw6_A 26S protease regulatory 99.7 3.8E-16 1.3E-20 114.8 9.8 77 231-307 1-77 (78)
52 3pxi_A Negative regulator of g 99.7 1E-16 3.5E-21 164.7 8.5 158 82-286 203-388 (758)
53 1qvr_A CLPB protein; coiled co 99.7 5.9E-17 2E-21 168.4 6.6 172 82-285 193-394 (854)
54 3te6_A Regulatory protein SIR3 99.7 5.1E-17 1.7E-21 150.2 5.3 131 82-248 47-213 (318)
55 3u61_B DNA polymerase accessor 99.6 1.6E-16 5.6E-21 146.7 7.3 169 82-301 50-235 (324)
56 1um8_A ATP-dependent CLP prote 99.6 4.3E-16 1.5E-20 147.1 9.2 218 82-304 74-366 (376)
57 2krk_A 26S protease regulatory 99.6 9.6E-16 3.3E-20 114.7 9.0 77 230-306 8-84 (86)
58 1in4_A RUVB, holliday junction 99.6 1.7E-15 5.9E-20 141.1 12.6 192 82-304 53-251 (334)
59 2qby_A CDC6 homolog 1, cell di 99.6 1.9E-15 6.4E-20 141.5 12.6 189 82-304 47-273 (386)
60 2qby_B CDC6 homolog 3, cell di 99.6 8.4E-16 2.9E-20 144.5 10.3 182 82-304 47-271 (384)
61 1sxj_D Activator 1 41 kDa subu 99.6 1.1E-15 3.6E-20 142.2 10.1 175 82-301 60-261 (353)
62 1njg_A DNA polymerase III subu 99.6 1.1E-15 3.9E-20 133.0 9.7 170 82-300 47-248 (250)
63 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 1.3E-16 4.4E-21 156.1 4.0 194 81-304 42-286 (500)
64 4fcw_A Chaperone protein CLPB; 99.6 5.4E-16 1.8E-20 142.0 5.3 179 81-285 48-280 (311)
65 3vlf_B 26S protease regulatory 99.6 5.1E-15 1.7E-19 111.3 8.9 76 234-309 2-77 (88)
66 1fnn_A CDC6P, cell division co 99.6 1.1E-14 3.8E-19 136.8 12.4 189 82-304 46-275 (389)
67 2p65_A Hypothetical protein PF 99.6 3.8E-16 1.3E-20 131.3 2.0 122 82-234 45-187 (187)
68 2chq_A Replication factor C sm 99.6 4E-15 1.4E-19 136.2 8.2 172 82-299 40-222 (319)
69 3pxi_A Negative regulator of g 99.6 5.2E-15 1.8E-19 152.0 9.5 174 82-285 523-726 (758)
70 1sxj_A Activator 1 95 kDa subu 99.6 2.7E-15 9.3E-20 147.7 6.9 178 82-302 79-273 (516)
71 1sxj_B Activator 1 37 kDa subu 99.5 1.2E-14 4.2E-19 133.1 9.3 170 82-301 44-229 (323)
72 3f9v_A Minichromosome maintena 99.5 2.5E-15 8.6E-20 150.2 4.5 195 82-305 329-589 (595)
73 1iqp_A RFCS; clamp loader, ext 99.5 1.9E-14 6.4E-19 132.1 9.8 154 82-280 48-216 (327)
74 1r6b_X CLPA protein; AAA+, N-t 99.5 7.5E-15 2.6E-19 150.7 7.8 175 82-284 490-716 (758)
75 1jr3_A DNA polymerase III subu 99.5 3.6E-14 1.2E-18 132.8 9.9 169 82-299 40-240 (373)
76 3aji_B S6C, proteasome (prosom 99.5 9E-14 3.1E-18 103.2 7.5 75 234-308 2-76 (83)
77 2dzn_B 26S protease regulatory 99.5 1.5E-14 5.3E-19 107.2 3.0 81 236-316 1-81 (82)
78 1qvr_A CLPB protein; coiled co 99.4 9.1E-14 3.1E-18 144.5 5.0 176 81-285 589-821 (854)
79 1sxj_E Activator 1 40 kDa subu 99.4 1.2E-12 4.2E-17 121.8 9.7 108 136-282 134-243 (354)
80 1sxj_C Activator 1 40 kDa subu 99.4 3.6E-13 1.2E-17 125.3 6.0 173 82-299 48-235 (340)
81 2bjv_A PSP operon transcriptio 99.4 1.3E-12 4.3E-17 117.2 9.1 184 81-296 30-250 (265)
82 1w5s_A Origin recognition comp 99.3 7.8E-12 2.7E-16 118.3 12.2 196 82-304 52-294 (412)
83 4akg_A Glutathione S-transfera 99.3 2.4E-11 8.1E-16 137.3 14.0 141 82-248 1269-1433(2695)
84 2wg5_A General control protein 99.3 6.1E-12 2.1E-16 97.9 6.0 69 2-70 39-107 (109)
85 1ojl_A Transcriptional regulat 99.3 1E-12 3.6E-17 120.7 1.8 174 81-283 26-235 (304)
86 3k1j_A LON protease, ATP-depen 99.2 1E-11 3.6E-16 124.3 8.8 151 136-302 201-374 (604)
87 1a5t_A Delta prime, HOLB; zinc 99.2 2.2E-11 7.6E-16 113.1 9.5 150 82-277 26-206 (334)
88 3co5_A Putative two-component 99.2 5.7E-12 2E-16 102.8 2.9 105 82-233 29-142 (143)
89 3cmw_A Protein RECA, recombina 99.1 9.6E-12 3.3E-16 135.3 1.8 110 82-211 1084-1218(1706)
90 3n70_A Transport activator; si 99.1 1.6E-11 5.4E-16 100.4 2.6 105 82-233 26-144 (145)
91 3h43_A Proteasome-activating n 99.1 1E-10 3.4E-15 86.7 6.1 59 1-59 19-77 (85)
92 2gno_A DNA polymerase III, gam 99.0 3.4E-10 1.2E-14 104.0 7.5 120 82-246 20-152 (305)
93 2r2a_A Uncharacterized protein 98.8 3E-09 1E-13 91.7 5.1 124 83-237 8-157 (199)
94 4akg_A Glutathione S-transfera 98.7 8.9E-08 3.1E-12 108.6 15.6 174 82-282 647-839 (2695)
95 3f8t_A Predicted ATPase involv 98.7 1.3E-08 4.6E-13 97.7 6.4 193 82-308 241-488 (506)
96 2vhj_A Ntpase P4, P4; non- hyd 98.7 2.6E-09 8.8E-14 98.2 0.5 113 82-218 125-242 (331)
97 2fna_A Conserved hypothetical 98.6 2.5E-07 8.5E-12 85.0 12.1 162 81-278 31-252 (357)
98 2c9o_A RUVB-like 1; hexameric 98.6 1.4E-07 4.7E-12 91.2 9.4 131 137-306 296-440 (456)
99 1ny5_A Transcriptional regulat 98.6 7E-08 2.4E-12 91.4 6.5 184 82-300 162-384 (387)
100 2kjq_A DNAA-related protein; s 98.5 5.7E-08 2E-12 79.6 4.1 53 82-149 38-96 (149)
101 2qen_A Walker-type ATPase; unk 98.5 1.9E-06 6.4E-11 79.0 14.4 163 81-277 32-247 (350)
102 3ec2_A DNA replication protein 98.4 5E-08 1.7E-12 81.9 2.1 65 82-148 40-112 (180)
103 3vkg_A Dynein heavy chain, cyt 98.4 3.4E-07 1.2E-11 104.7 7.9 140 82-247 1306-1470(3245)
104 2w58_A DNAI, primosome compone 98.4 2.1E-07 7E-12 79.4 3.8 66 82-149 56-128 (202)
105 3cmu_A Protein RECA, recombina 98.2 1.1E-06 3.9E-11 97.0 7.4 99 82-180 1429-1552(2050)
106 1svm_A Large T antigen; AAA+ f 98.2 2E-07 6.7E-12 87.9 1.2 110 82-232 171-284 (377)
107 3dzd_A Transcriptional regulat 98.2 1.1E-06 3.9E-11 82.5 5.8 168 82-282 154-360 (368)
108 1g41_A Heat shock protein HSLU 98.2 6.7E-06 2.3E-10 78.9 11.2 165 122-304 238-434 (444)
109 2qgz_A Helicase loader, putati 98.1 5.2E-07 1.8E-11 82.7 1.4 66 82-149 154-227 (308)
110 3vkg_A Dynein heavy chain, cyt 98.0 7.8E-06 2.7E-10 93.8 8.2 136 84-244 608-751 (3245)
111 1jr3_D DNA polymerase III, del 97.9 1.8E-05 6.1E-10 73.1 7.9 170 82-302 20-208 (343)
112 1tue_A Replication protein E1; 97.9 8.2E-06 2.8E-10 70.2 4.1 25 82-106 60-87 (212)
113 3m9b_A Proteasome-associated A 97.8 2.9E-05 1E-09 67.8 6.4 61 2-64 100-160 (251)
114 1u0j_A DNA replication protein 97.5 4E-05 1.4E-09 68.6 2.6 22 82-103 106-130 (267)
115 1ye8_A Protein THEP1, hypothet 97.4 0.00013 4.5E-09 61.2 5.3 22 84-105 4-28 (178)
116 2zr9_A Protein RECA, recombina 97.1 0.00024 8.3E-09 66.0 3.7 69 82-150 63-153 (349)
117 3hr8_A Protein RECA; alpha and 97.1 0.00037 1.3E-08 64.9 4.3 69 82-150 63-153 (356)
118 1xp8_A RECA protein, recombina 97.1 0.00058 2E-08 63.9 5.7 70 82-151 76-167 (366)
119 1n0w_A DNA repair protein RAD5 97.0 0.00073 2.5E-08 58.4 5.2 70 82-151 26-134 (243)
120 2r8r_A Sensor protein; KDPD, P 96.9 0.017 5.9E-07 50.2 13.0 63 212-283 146-208 (228)
121 3cmu_A Protein RECA, recombina 96.9 0.0008 2.7E-08 74.8 5.5 99 82-180 734-857 (2050)
122 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.0024 8.4E-08 54.4 7.6 25 125-149 110-136 (235)
123 1u94_A RECA protein, recombina 96.8 0.0012 4.2E-08 61.5 5.3 69 82-150 65-155 (356)
124 2z43_A DNA repair and recombin 96.7 0.0013 4.4E-08 60.3 5.1 70 82-151 109-218 (324)
125 2cvh_A DNA repair and recombin 96.7 0.0023 8E-08 54.3 6.3 29 83-111 23-54 (220)
126 1z6t_A APAF-1, apoptotic prote 96.6 0.007 2.4E-07 59.5 10.0 71 200-275 256-327 (591)
127 2ehv_A Hypothetical protein PH 96.6 0.0041 1.4E-07 53.8 7.0 24 127-150 126-149 (251)
128 3io5_A Recombination and repai 96.5 0.0021 7.1E-08 58.9 4.9 69 83-151 31-126 (333)
129 2wfw_A ARC; ATP-binding protei 96.5 0.0025 8.4E-08 51.4 4.7 59 2-60 69-146 (153)
130 1v5w_A DMC1, meiotic recombina 96.4 0.0018 6.2E-08 59.9 3.5 70 82-151 124-234 (343)
131 2orw_A Thymidine kinase; TMTK, 96.4 0.00048 1.7E-08 58.0 -0.5 13 83-95 6-18 (184)
132 3cmw_A Protein RECA, recombina 96.3 0.0028 9.7E-08 69.6 5.0 99 82-180 1433-1556(1706)
133 3lda_A DNA repair protein RAD5 96.2 0.0028 9.6E-08 59.9 3.8 48 129-177 266-313 (400)
134 3sfz_A APAF-1, apoptotic pepti 96.2 0.03 1E-06 59.3 12.2 68 201-273 257-325 (1249)
135 2iut_A DNA translocase FTSK; n 96.1 0.016 5.6E-07 57.0 9.0 74 138-243 345-420 (574)
136 4a74_A DNA repair and recombin 96.1 0.014 4.8E-07 49.6 7.6 18 134-151 123-140 (231)
137 1qhx_A CPT, protein (chloramph 96.0 0.0015 5E-08 53.8 0.8 33 83-115 6-41 (178)
138 3m9b_A Proteasome-associated A 95.9 0.017 5.9E-07 50.4 6.9 64 2-65 160-241 (251)
139 2i1q_A DNA repair and recombin 95.8 0.0063 2.2E-07 55.4 4.3 25 127-151 194-219 (322)
140 2dr3_A UPF0273 protein PH0284; 95.8 0.028 9.5E-07 48.3 8.3 23 127-149 119-141 (247)
141 2b8t_A Thymidine kinase; deoxy 95.8 0.0028 9.4E-08 55.1 1.8 66 82-148 14-101 (223)
142 1pzn_A RAD51, DNA repair and r 95.8 0.0061 2.1E-07 56.5 4.1 17 135-151 230-246 (349)
143 2zts_A Putative uncharacterize 95.8 0.018 6.2E-07 49.5 6.8 27 125-151 124-150 (251)
144 2ius_A DNA translocase FTSK; n 95.6 0.012 4.1E-07 57.3 5.6 76 137-244 297-375 (512)
145 2fz4_A DNA repair protein RAD2 95.3 0.0087 3E-07 52.1 3.2 34 83-116 111-148 (237)
146 3trf_A Shikimate kinase, SK; a 95.1 0.0036 1.2E-07 51.8 -0.2 36 83-120 8-46 (185)
147 3jvv_A Twitching mobility prot 95.1 0.024 8.4E-07 52.6 5.5 64 82-145 125-205 (356)
148 3dm5_A SRP54, signal recogniti 95.0 0.037 1.3E-06 52.9 6.6 65 82-146 102-192 (443)
149 2p5t_B PEZT; postsegregational 94.9 0.016 5.4E-07 50.8 3.5 31 83-113 35-68 (253)
150 1g5t_A COB(I)alamin adenosyltr 94.9 0.018 6.2E-07 48.9 3.6 114 81-231 29-178 (196)
151 3kb2_A SPBC2 prophage-derived 94.8 0.0049 1.7E-07 50.0 -0.1 27 83-109 4-33 (173)
152 2a5y_B CED-4; apoptosis; HET: 94.7 0.097 3.3E-06 51.1 9.1 66 203-273 267-334 (549)
153 1cr0_A DNA primase/helicase; R 94.7 0.038 1.3E-06 49.4 5.6 17 133-149 144-160 (296)
154 3a4m_A L-seryl-tRNA(SEC) kinas 94.7 0.017 5.9E-07 50.8 3.3 33 83-115 7-45 (260)
155 2r6a_A DNAB helicase, replicat 94.6 0.054 1.9E-06 51.7 6.8 18 134-151 311-328 (454)
156 1kag_A SKI, shikimate kinase I 94.6 0.017 6E-07 46.9 2.8 31 83-115 7-40 (173)
157 1via_A Shikimate kinase; struc 94.5 0.0068 2.3E-07 49.8 0.1 25 83-107 7-34 (175)
158 3iij_A Coilin-interacting nucl 94.4 0.0072 2.5E-07 49.8 0.1 26 83-108 14-42 (180)
159 1zuh_A Shikimate kinase; alpha 94.4 0.0065 2.2E-07 49.5 -0.2 26 83-108 10-38 (168)
160 2rhm_A Putative kinase; P-loop 94.4 0.0067 2.3E-07 50.3 -0.2 26 83-108 8-36 (193)
161 1nlf_A Regulatory protein REPA 94.4 0.039 1.3E-06 48.9 4.8 14 82-95 32-45 (279)
162 3vaa_A Shikimate kinase, SK; s 94.3 0.0069 2.4E-07 51.0 -0.2 36 82-119 27-65 (199)
163 1y63_A LMAJ004144AAA protein; 94.3 0.0059 2E-07 50.8 -0.7 26 83-108 13-42 (184)
164 3kl4_A SRP54, signal recogniti 94.3 0.033 1.1E-06 53.1 4.3 49 255-305 283-342 (433)
165 2iyv_A Shikimate kinase, SK; t 94.2 0.0077 2.6E-07 49.7 -0.2 26 83-108 5-33 (184)
166 1e6c_A Shikimate kinase; phosp 94.2 0.0088 3E-07 48.7 0.1 25 83-107 5-32 (173)
167 3lw7_A Adenylate kinase relate 94.1 0.01 3.5E-07 47.9 0.5 25 83-108 4-31 (179)
168 2q6t_A DNAB replication FORK h 94.1 0.098 3.4E-06 49.8 7.4 17 134-150 308-324 (444)
169 3cm0_A Adenylate kinase; ATP-b 94.1 0.0085 2.9E-07 49.5 -0.2 25 83-107 7-34 (186)
170 2vli_A Antibiotic resistance p 94.0 0.0081 2.8E-07 49.4 -0.4 24 83-106 8-34 (183)
171 2eyu_A Twitching motility prot 94.0 0.0093 3.2E-07 52.9 -0.1 63 82-145 27-107 (261)
172 1aky_A Adenylate kinase; ATP:A 94.0 0.01 3.5E-07 50.7 0.1 31 83-115 7-40 (220)
173 1tev_A UMP-CMP kinase; ploop, 94.0 0.01 3.5E-07 49.0 0.1 30 83-114 6-38 (196)
174 1ly1_A Polynucleotide kinase; 93.9 0.011 3.9E-07 48.2 0.3 25 83-107 5-33 (181)
175 2c95_A Adenylate kinase 1; tra 93.9 0.01 3.6E-07 49.2 0.0 26 83-108 12-40 (196)
176 1zd8_A GTP:AMP phosphotransfer 93.9 0.012 4.2E-07 50.5 0.5 26 83-108 10-38 (227)
177 2i3b_A HCR-ntpase, human cance 93.9 0.022 7.5E-07 47.9 2.0 18 83-100 4-24 (189)
178 3be4_A Adenylate kinase; malar 93.8 0.011 3.8E-07 50.4 0.0 31 83-115 8-41 (217)
179 2cdn_A Adenylate kinase; phosp 93.8 0.01 3.5E-07 49.8 -0.2 26 83-108 23-51 (201)
180 1ak2_A Adenylate kinase isoenz 93.8 0.012 4E-07 50.9 0.1 26 83-108 19-47 (233)
181 3dl0_A Adenylate kinase; phosp 93.7 0.013 4.3E-07 49.8 0.3 26 83-108 3-31 (216)
182 1zp6_A Hypothetical protein AT 93.7 0.018 6.2E-07 47.6 1.2 31 83-113 12-45 (191)
183 2ze6_A Isopentenyl transferase 93.7 0.0097 3.3E-07 52.4 -0.5 29 83-111 4-35 (253)
184 1kht_A Adenylate kinase; phosp 93.7 0.0093 3.2E-07 49.2 -0.7 20 83-102 6-28 (192)
185 1ukz_A Uridylate kinase; trans 93.7 0.015 5.1E-07 48.8 0.6 26 83-108 18-46 (203)
186 1qf9_A UMP/CMP kinase, protein 93.6 0.013 4.4E-07 48.4 0.1 26 83-108 9-37 (194)
187 2bwj_A Adenylate kinase 5; pho 93.6 0.013 4.4E-07 48.8 0.0 26 83-108 15-43 (199)
188 2pt5_A Shikimate kinase, SK; a 93.6 0.012 4.1E-07 47.7 -0.2 35 83-119 3-40 (168)
189 3sr0_A Adenylate kinase; phosp 93.5 0.014 4.8E-07 49.9 0.1 30 84-115 4-36 (206)
190 3fb4_A Adenylate kinase; psych 93.4 0.014 4.7E-07 49.5 -0.2 26 83-108 3-31 (216)
191 1jjv_A Dephospho-COA kinase; P 93.1 0.051 1.7E-06 45.6 3.1 23 84-107 6-31 (206)
192 1gvn_B Zeta; postsegregational 93.1 0.02 7E-07 51.3 0.6 32 82-113 35-69 (287)
193 1e4v_A Adenylate kinase; trans 93.1 0.016 5.4E-07 49.3 -0.2 26 83-108 3-31 (214)
194 1zak_A Adenylate kinase; ATP:A 93.0 0.013 4.6E-07 50.0 -0.8 25 83-107 8-35 (222)
195 2xb4_A Adenylate kinase; ATP-b 93.0 0.019 6.3E-07 49.3 0.1 31 83-115 3-36 (223)
196 3e1s_A Exodeoxyribonuclease V, 92.8 0.013 4.3E-07 58.1 -1.4 67 82-148 206-291 (574)
197 3t61_A Gluconokinase; PSI-biol 92.8 0.018 6.3E-07 48.3 -0.2 25 83-107 21-48 (202)
198 4b3f_X DNA-binding protein smu 92.8 0.066 2.3E-06 53.5 3.8 14 82-95 207-220 (646)
199 2pbr_A DTMP kinase, thymidylat 92.7 0.022 7.7E-07 46.9 0.2 27 83-109 3-35 (195)
200 2ewv_A Twitching motility prot 92.6 0.026 8.8E-07 52.7 0.6 66 81-146 137-219 (372)
201 2jaq_A Deoxyguanosine kinase; 92.6 0.021 7.1E-07 47.6 -0.2 24 84-107 4-30 (205)
202 2v54_A DTMP kinase, thymidylat 92.4 0.027 9.2E-07 47.0 0.3 27 83-109 7-37 (204)
203 3tlx_A Adenylate kinase 2; str 92.4 0.025 8.5E-07 49.3 0.1 32 83-116 32-66 (243)
204 3umf_A Adenylate kinase; rossm 92.3 0.02 7E-07 49.3 -0.5 34 83-118 32-68 (217)
205 2pez_A Bifunctional 3'-phospho 92.3 0.028 9.4E-07 46.2 0.3 31 83-113 8-44 (179)
206 1nks_A Adenylate kinase; therm 92.3 0.016 5.5E-07 47.7 -1.2 32 83-114 4-41 (194)
207 4a1f_A DNAB helicase, replicat 92.3 0.3 1E-05 44.8 7.3 38 136-173 156-194 (338)
208 3crm_A TRNA delta(2)-isopenten 92.3 0.032 1.1E-06 51.1 0.6 29 83-111 8-39 (323)
209 1knq_A Gluconate kinase; ALFA/ 92.2 0.027 9.4E-07 45.9 0.1 25 83-107 11-38 (175)
210 2z0h_A DTMP kinase, thymidylat 92.1 0.031 1.1E-06 46.2 0.3 26 84-109 4-35 (197)
211 1w4r_A Thymidine kinase; type 92.0 0.12 4.1E-06 43.7 3.9 63 83-148 23-103 (195)
212 2if2_A Dephospho-COA kinase; a 91.8 0.074 2.5E-06 44.4 2.4 44 84-130 5-51 (204)
213 3bgw_A DNAB-like replicative h 91.6 0.32 1.1E-05 46.3 6.9 28 82-110 199-233 (444)
214 3upu_A ATP-dependent DNA helic 91.6 0.041 1.4E-06 52.6 0.6 67 82-148 47-140 (459)
215 2pt7_A CAG-ALFA; ATPase, prote 91.6 0.085 2.9E-06 48.3 2.7 66 82-147 173-251 (330)
216 1q57_A DNA primase/helicase; d 91.5 0.35 1.2E-05 46.6 7.2 29 82-110 244-279 (503)
217 3bh0_A DNAB-like replicative h 91.3 0.34 1.2E-05 43.8 6.5 14 82-95 70-83 (315)
218 1cke_A CK, MSSA, protein (cyti 91.3 0.048 1.7E-06 46.3 0.7 25 83-107 8-35 (227)
219 4eun_A Thermoresistant glucoki 91.3 0.039 1.3E-06 46.3 0.1 24 83-106 32-58 (200)
220 2yvu_A Probable adenylyl-sulfa 91.2 0.17 5.9E-06 41.5 4.0 32 83-114 16-53 (186)
221 1tf7_A KAIC; homohexamer, hexa 91.2 0.42 1.4E-05 46.4 7.3 43 127-174 129-171 (525)
222 1tf7_A KAIC; homohexamer, hexa 90.6 0.58 2E-05 45.4 7.8 48 122-175 357-404 (525)
223 3b0c_W CENP-W, centromere prot 90.6 0.51 1.7E-05 33.4 5.5 68 236-308 8-75 (76)
224 3r20_A Cytidylate kinase; stru 90.4 0.052 1.8E-06 47.3 0.1 25 83-107 12-39 (233)
225 1vma_A Cell division protein F 90.3 0.21 7E-06 45.3 4.0 65 82-146 106-196 (306)
226 3nwj_A ATSK2; P loop, shikimat 90.2 0.055 1.9E-06 47.6 0.1 26 83-108 51-79 (250)
227 3uie_A Adenylyl-sulfate kinase 90.2 0.19 6.6E-06 41.9 3.5 31 83-113 28-64 (200)
228 1sky_E F1-ATPase, F1-ATP synth 90.1 0.79 2.7E-05 44.0 8.0 14 82-95 153-166 (473)
229 3zvl_A Bifunctional polynucleo 90.0 0.11 3.9E-06 49.0 2.1 26 82-107 260-288 (416)
230 2grj_A Dephospho-COA kinase; T 89.9 0.078 2.7E-06 44.6 0.8 26 83-108 15-43 (192)
231 2plr_A DTMP kinase, probable t 89.9 0.043 1.5E-06 45.8 -0.9 21 83-103 7-30 (213)
232 3ake_A Cytidylate kinase; CMP 89.8 0.071 2.4E-06 44.4 0.5 26 83-108 5-33 (208)
233 2gxq_A Heat resistant RNA depe 89.6 0.28 9.4E-06 40.7 4.0 14 82-95 40-53 (207)
234 2wwf_A Thymidilate kinase, put 89.4 0.02 6.7E-07 48.2 -3.5 21 83-103 13-36 (212)
235 1vht_A Dephospho-COA kinase; s 89.3 0.088 3E-06 44.6 0.7 25 83-108 7-34 (218)
236 2axn_A 6-phosphofructo-2-kinas 89.1 0.27 9.1E-06 47.9 4.0 34 83-116 38-77 (520)
237 3a8t_A Adenylate isopentenyltr 89.0 0.084 2.9E-06 48.5 0.3 30 83-112 43-75 (339)
238 2orv_A Thymidine kinase; TP4A 88.9 0.46 1.6E-05 41.2 4.9 64 82-148 21-102 (234)
239 4e22_A Cytidylate kinase; P-lo 88.8 0.12 4.1E-06 45.1 1.2 30 83-114 30-62 (252)
240 3thx_B DNA mismatch repair pro 88.7 0.51 1.8E-05 49.1 6.0 14 82-95 675-688 (918)
241 1vec_A ATP-dependent RNA helic 88.7 0.49 1.7E-05 39.1 4.9 14 82-95 42-55 (206)
242 1ltq_A Polynucleotide kinase; 88.6 0.088 3E-06 46.9 0.1 25 83-107 5-33 (301)
243 2h92_A Cytidylate kinase; ross 88.5 0.13 4.5E-06 43.4 1.2 26 83-108 6-34 (219)
244 2bbw_A Adenylate kinase 4, AK4 88.5 0.066 2.3E-06 46.4 -0.8 24 83-106 30-56 (246)
245 2px0_A Flagellar biosynthesis 88.5 0.56 1.9E-05 42.1 5.4 60 82-143 107-189 (296)
246 3b6e_A Interferon-induced heli 88.4 0.18 6.1E-06 42.0 2.0 14 82-95 50-63 (216)
247 1uf9_A TT1252 protein; P-loop, 88.4 0.12 4.2E-06 42.8 0.9 25 83-108 11-38 (203)
248 3gmt_A Adenylate kinase; ssgci 88.3 0.085 2.9E-06 45.8 -0.2 30 85-116 13-45 (230)
249 1nn5_A Similar to deoxythymidy 88.1 0.029 9.9E-07 47.2 -3.3 20 83-102 12-34 (215)
250 1x6v_B Bifunctional 3'-phospho 87.9 0.19 6.6E-06 50.0 2.1 31 83-113 55-91 (630)
251 2oap_1 GSPE-2, type II secreti 87.9 0.18 6.2E-06 49.0 1.9 65 82-146 262-343 (511)
252 3foz_A TRNA delta(2)-isopenten 87.6 0.11 3.8E-06 47.2 0.1 30 83-112 13-45 (316)
253 3fdi_A Uncharacterized protein 87.6 0.13 4.5E-06 43.4 0.6 30 83-115 9-41 (201)
254 1q3t_A Cytidylate kinase; nucl 87.5 0.14 4.8E-06 44.0 0.8 25 83-107 19-46 (236)
255 1uj2_A Uridine-cytidine kinase 87.4 0.15 5.2E-06 44.3 0.9 32 83-114 25-67 (252)
256 3exa_A TRNA delta(2)-isopenten 87.4 0.14 4.6E-06 46.7 0.6 30 83-112 6-38 (322)
257 3vkw_A Replicase large subunit 87.3 0.13 4.5E-06 49.0 0.5 16 83-98 164-179 (446)
258 2qt1_A Nicotinamide riboside k 86.9 0.15 5.1E-06 42.7 0.5 25 83-107 24-52 (207)
259 2ga8_A Hypothetical 39.9 kDa p 86.7 0.018 6.3E-07 53.3 -5.7 25 83-107 27-54 (359)
260 2f6r_A COA synthase, bifunctio 86.5 0.13 4.5E-06 45.7 -0.0 28 83-113 78-108 (281)
261 1vt4_I APAF-1 related killer D 86.4 0.91 3.1E-05 48.0 6.2 41 204-247 268-312 (1221)
262 4f4c_A Multidrug resistance pr 86.1 1.1 3.8E-05 48.5 6.9 21 82-102 446-469 (1321)
263 3d3q_A TRNA delta(2)-isopenten 86.0 0.15 5.1E-06 47.0 0.0 29 83-111 10-41 (340)
264 1m7g_A Adenylylsulfate kinase; 85.8 0.12 4.1E-06 43.6 -0.6 32 83-114 28-66 (211)
265 2j37_W Signal recognition part 85.6 0.4 1.4E-05 46.5 2.9 29 82-110 103-137 (504)
266 2qor_A Guanylate kinase; phosp 85.3 0.14 4.7E-06 43.0 -0.5 20 83-102 15-37 (204)
267 1p5z_B DCK, deoxycytidine kina 84.7 0.2 6.9E-06 43.8 0.3 24 83-106 27-54 (263)
268 1hv8_A Putative ATP-dependent 84.7 0.71 2.4E-05 41.4 4.0 14 82-95 46-59 (367)
269 2bdt_A BH3686; alpha-beta prot 84.7 0.21 7.1E-06 41.1 0.3 30 83-113 5-37 (189)
270 4ag6_A VIRB4 ATPase, type IV s 84.6 3.5 0.00012 38.0 8.8 106 102-242 222-343 (392)
271 1fx0_A ATP synthase alpha chai 84.5 7.2 0.00025 37.6 11.0 59 82-146 165-230 (507)
272 2qmh_A HPR kinase/phosphorylas 84.5 0.2 6.8E-06 42.6 0.1 42 267-308 154-195 (205)
273 2fwr_A DNA repair protein RAD2 84.2 0.35 1.2E-05 45.8 1.7 34 83-116 111-148 (472)
274 2gk6_A Regulator of nonsense t 84.1 0.31 1.1E-05 48.5 1.3 14 82-95 197-210 (624)
275 3thx_A DNA mismatch repair pro 83.9 2.5 8.5E-05 44.0 8.1 14 82-95 664-677 (934)
276 1wp9_A ATP-dependent RNA helic 83.8 0.9 3.1E-05 42.1 4.4 33 83-115 26-66 (494)
277 1wb9_A DNA mismatch repair pro 83.7 2.9 9.9E-05 42.8 8.4 14 82-95 609-622 (800)
278 3hdt_A Putative kinase; struct 83.1 0.27 9.2E-06 42.3 0.4 25 83-107 17-44 (223)
279 2xxa_A Signal recognition part 82.7 0.84 2.9E-05 43.3 3.7 64 82-145 102-192 (433)
280 1ex7_A Guanylate kinase; subst 82.6 0.2 6.8E-06 41.9 -0.6 20 82-101 3-25 (186)
281 1j8m_F SRP54, signal recogniti 82.4 0.92 3.2E-05 40.6 3.7 64 82-145 100-189 (297)
282 1gtv_A TMK, thymidylate kinase 82.1 0.13 4.4E-06 43.1 -2.0 19 84-102 4-25 (214)
283 2qe7_A ATP synthase subunit al 82.0 4.9 0.00017 38.7 8.7 25 82-106 164-192 (502)
284 4eaq_A DTMP kinase, thymidylat 81.8 0.2 6.8E-06 43.2 -1.0 26 83-108 29-59 (229)
285 2j41_A Guanylate kinase; GMP, 81.4 0.32 1.1E-05 40.3 0.2 19 83-101 9-30 (207)
286 1t6n_A Probable ATP-dependent 81.4 2.5 8.4E-05 35.2 5.9 13 83-95 54-66 (220)
287 4i1u_A Dephospho-COA kinase; s 81.1 0.84 2.9E-05 38.9 2.8 24 85-109 14-40 (210)
288 2xau_A PRE-mRNA-splicing facto 81.0 0.5 1.7E-05 48.2 1.5 13 83-95 112-124 (773)
289 3tbk_A RIG-I helicase domain; 80.9 3.8 0.00013 38.9 7.7 13 83-95 22-34 (555)
290 3oaa_A ATP synthase subunit al 80.8 3.1 0.00011 40.1 6.9 24 82-105 164-191 (513)
291 1p9r_A General secretion pathw 80.4 0.36 1.2E-05 45.6 0.2 65 81-145 168-245 (418)
292 3tau_A Guanylate kinase, GMP k 80.4 0.38 1.3E-05 40.5 0.3 20 83-102 11-33 (208)
293 3tr0_A Guanylate kinase, GMP k 79.6 0.38 1.3E-05 39.8 0.0 19 83-101 10-31 (205)
294 3eph_A TRNA isopentenyltransfe 79.3 0.33 1.1E-05 45.7 -0.4 28 83-110 5-35 (409)
295 3asz_A Uridine kinase; cytidin 79.3 0.4 1.4E-05 40.0 0.1 32 213-246 116-147 (211)
296 1kgd_A CASK, peripheral plasma 79.1 0.4 1.4E-05 39.3 0.0 19 83-101 8-29 (180)
297 2j0s_A ATP-dependent RNA helic 79.0 1.5 5.1E-05 40.3 4.0 14 82-95 76-89 (410)
298 2r9v_A ATP synthase subunit al 79.0 6.7 0.00023 37.8 8.6 25 82-106 177-205 (515)
299 3fmo_B ATP-dependent RNA helic 78.9 2.3 7.9E-05 37.8 5.1 13 138-150 237-249 (300)
300 3pey_A ATP-dependent RNA helic 78.9 1.9 6.4E-05 39.0 4.6 13 83-95 47-59 (395)
301 3eiq_A Eukaryotic initiation f 78.9 1.7 5.8E-05 39.8 4.3 14 82-95 79-92 (414)
302 2o8b_B DNA mismatch repair pro 78.8 2.4 8.1E-05 44.6 5.8 14 82-95 791-804 (1022)
303 4gp7_A Metallophosphoesterase; 78.5 0.38 1.3E-05 39.1 -0.2 13 83-95 12-24 (171)
304 3fe2_A Probable ATP-dependent 78.3 2.3 7.9E-05 36.2 4.7 14 82-95 68-81 (242)
305 3fmp_B ATP-dependent RNA helic 78.2 1.8 6.3E-05 40.9 4.4 14 82-95 133-146 (479)
306 2wjy_A Regulator of nonsense t 78.2 0.65 2.2E-05 47.6 1.3 14 82-95 373-386 (800)
307 1m8p_A Sulfate adenylyltransfe 78.1 0.47 1.6E-05 46.8 0.2 31 83-113 399-436 (573)
308 2ocp_A DGK, deoxyguanosine kin 78.1 0.48 1.6E-05 40.7 0.2 23 83-105 5-31 (241)
309 1c9k_A COBU, adenosylcobinamid 78.0 0.54 1.9E-05 39.1 0.6 29 83-112 2-33 (180)
310 3tqf_A HPR(Ser) kinase; transf 78.0 0.67 2.3E-05 38.5 1.1 20 76-95 11-31 (181)
311 2gza_A Type IV secretion syste 78.0 0.97 3.3E-05 41.6 2.3 65 82-146 177-262 (361)
312 1taf_B TFIID TBP associated fa 77.4 2.8 9.5E-05 29.1 4.0 31 271-301 39-69 (70)
313 3c8u_A Fructokinase; YP_612366 77.3 0.36 1.2E-05 40.5 -0.7 24 223-246 147-170 (208)
314 1id3_B Histone H4; nucleosome 76.6 3.2 0.00011 31.0 4.4 34 270-303 60-93 (102)
315 2ck3_D ATP synthase subunit be 75.9 23 0.0008 33.8 11.3 46 82-134 155-206 (482)
316 2yfw_B Histone H4, H4; cell cy 75.7 3.7 0.00013 30.7 4.6 34 270-303 61-94 (103)
317 2xzl_A ATP-dependent helicase 75.4 0.72 2.5E-05 47.3 0.7 14 82-95 377-390 (802)
318 1rz3_A Hypothetical protein rb 75.3 0.92 3.2E-05 37.7 1.3 27 83-109 25-57 (201)
319 3p32_A Probable GTPase RV1496/ 75.3 1.2 4.2E-05 40.8 2.2 13 83-95 82-94 (355)
320 3tmk_A Thymidylate kinase; pho 75.2 0.57 1.9E-05 40.1 -0.1 21 83-103 8-31 (216)
321 3a00_A Guanylate kinase, GMP k 75.2 0.61 2.1E-05 38.3 0.1 18 84-101 5-25 (186)
322 1ls1_A Signal recognition part 75.2 2.3 8E-05 37.9 4.0 22 125-146 169-190 (295)
323 1bif_A 6-phosphofructo-2-kinas 74.7 2.4 8.2E-05 40.3 4.2 31 83-113 42-78 (469)
324 2qm8_A GTPase/ATPase; G protei 74.6 1.9 6.7E-05 39.2 3.4 17 83-99 58-77 (337)
325 3lfu_A DNA helicase II; SF1 he 74.3 0.47 1.6E-05 46.9 -1.0 16 80-95 22-37 (647)
326 1tzy_D Histone H4-VI; histone- 74.0 4 0.00014 30.4 4.4 34 270-303 61-94 (103)
327 4edh_A DTMP kinase, thymidylat 73.9 0.45 1.5E-05 40.5 -1.1 26 83-108 9-40 (213)
328 3v9p_A DTMP kinase, thymidylat 73.5 0.43 1.5E-05 41.2 -1.3 19 83-101 28-49 (227)
329 3oiy_A Reverse gyrase helicase 73.2 1.6 5.5E-05 40.3 2.5 13 83-95 39-51 (414)
330 1a7j_A Phosphoribulokinase; tr 73.1 0.45 1.5E-05 42.5 -1.3 29 216-246 142-170 (290)
331 3fht_A ATP-dependent RNA helic 72.8 2.4 8.3E-05 38.6 3.6 14 82-95 66-79 (412)
332 2p6r_A Afuhel308 helicase; pro 72.3 3.1 0.0001 41.6 4.5 14 82-95 42-55 (702)
333 3e2i_A Thymidine kinase; Zn-bi 72.1 1.5 5E-05 37.6 1.8 14 82-95 30-43 (219)
334 1b67_A Protein (histone HMFA); 72.1 2.4 8.2E-05 29.0 2.6 34 270-303 34-67 (68)
335 2hue_C Histone H4; mini beta s 71.4 2.8 9.5E-05 30.1 2.9 35 269-303 41-75 (84)
336 1zu4_A FTSY; GTPase, signal re 71.3 3.4 0.00012 37.3 4.1 14 82-95 107-120 (320)
337 3kjh_A CO dehydrogenase/acetyl 70.5 44 0.0015 27.6 11.4 40 200-241 132-171 (254)
338 1znw_A Guanylate kinase, GMP k 70.4 0.92 3.1E-05 37.9 0.1 20 83-102 23-45 (207)
339 2ck3_A ATP synthase subunit al 70.0 7.9 0.00027 37.3 6.5 21 82-102 164-188 (510)
340 1lvg_A Guanylate kinase, GMP k 70.0 0.94 3.2E-05 37.7 0.1 18 83-100 7-27 (198)
341 4tmk_A Protein (thymidylate ki 69.6 0.62 2.1E-05 39.7 -1.2 19 83-101 6-27 (213)
342 3fho_A ATP-dependent RNA helic 69.5 4 0.00014 39.1 4.4 14 82-95 160-173 (508)
343 3lv8_A DTMP kinase, thymidylat 69.4 0.64 2.2E-05 40.3 -1.1 19 83-101 30-51 (236)
344 3szr_A Interferon-induced GTP- 69.3 3.1 0.00011 41.1 3.7 18 83-100 48-68 (608)
345 3ney_A 55 kDa erythrocyte memb 69.0 1.1 3.6E-05 37.8 0.2 21 82-102 21-44 (197)
346 1w36_D RECD, exodeoxyribonucle 69.0 0.83 2.9E-05 45.2 -0.6 14 82-95 166-179 (608)
347 1z6g_A Guanylate kinase; struc 68.3 1.1 3.7E-05 38.0 0.1 20 82-101 25-47 (218)
348 2www_A Methylmalonic aciduria 68.2 3.1 0.00011 38.0 3.2 17 83-99 77-96 (349)
349 3lnc_A Guanylate kinase, GMP k 68.2 0.95 3.2E-05 38.4 -0.3 19 83-101 30-52 (231)
350 1sq5_A Pantothenate kinase; P- 67.8 0.98 3.3E-05 40.5 -0.3 56 217-277 210-267 (308)
351 3e70_C DPA, signal recognition 67.7 3.2 0.00011 37.7 3.1 14 82-95 131-144 (328)
352 2jeo_A Uridine-cytidine kinase 67.4 1 3.5E-05 38.8 -0.3 21 83-103 28-51 (245)
353 4a2p_A RIG-I, retinoic acid in 67.4 8 0.00028 36.7 6.1 13 83-95 25-37 (556)
354 3l0o_A Transcription terminati 67.3 5.3 0.00018 37.5 4.5 45 3-47 58-107 (427)
355 4hlc_A DTMP kinase, thymidylat 66.8 1.5 5.1E-05 37.0 0.7 26 83-108 5-35 (205)
356 3kta_A Chromosome segregation 66.4 1.1 3.8E-05 36.2 -0.2 22 81-102 27-51 (182)
357 1knx_A Probable HPR(Ser) kinas 66.3 1.8 6.1E-05 39.2 1.1 41 267-307 268-308 (312)
358 1ku5_A HPHA, archaeal histon; 66.2 5.1 0.00017 27.5 3.2 35 267-301 35-69 (70)
359 3i5x_A ATP-dependent RNA helic 65.7 8.1 0.00028 37.1 5.8 14 137-150 227-240 (563)
360 1g8f_A Sulfate adenylyltransfe 65.5 1 3.5E-05 43.6 -0.7 22 82-103 397-421 (511)
361 3ld9_A DTMP kinase, thymidylat 65.5 0.88 3E-05 39.1 -1.1 20 83-102 24-46 (223)
362 1xx6_A Thymidine kinase; NESG, 65.4 1.6 5.4E-05 36.4 0.6 64 83-148 11-93 (191)
363 1htw_A HI0065; nucleotide-bind 64.9 1.4 4.6E-05 35.6 0.0 19 83-101 36-57 (158)
364 2p67_A LAO/AO transport system 64.6 6.3 0.00022 35.6 4.5 13 83-95 59-71 (341)
365 2gks_A Bifunctional SAT/APS ki 64.6 3.1 0.00011 40.5 2.6 33 83-115 375-413 (546)
366 4dcu_A GTP-binding protein ENG 64.4 5 0.00017 37.9 3.9 13 83-95 26-38 (456)
367 1s96_A Guanylate kinase, GMP k 64.4 1.4 4.8E-05 37.5 0.0 20 83-102 19-41 (219)
368 2dgy_A MGC11102 protein; EIF-1 64.4 20 0.00068 27.1 6.5 52 1-52 16-68 (111)
369 1f1e_A Histone fold protein; a 64.3 8.2 0.00028 31.0 4.6 36 271-306 115-150 (154)
370 3tqc_A Pantothenate kinase; bi 64.2 1.3 4.4E-05 40.2 -0.3 27 218-246 223-249 (321)
371 1fx0_B ATP synthase beta chain 63.8 27 0.00093 33.5 8.8 44 82-134 167-218 (498)
372 1xjc_A MOBB protein homolog; s 63.3 1.3 4.3E-05 36.4 -0.4 13 83-95 7-19 (169)
373 1nij_A Hypothetical protein YJ 63.2 3 0.0001 37.5 2.0 13 83-95 7-19 (318)
374 3sqw_A ATP-dependent RNA helic 63.1 9.6 0.00033 36.9 5.8 13 83-95 63-75 (579)
375 1n1j_A NF-YB; histone-like PAI 63.0 10 0.00035 27.5 4.6 32 271-302 43-74 (93)
376 3def_A T7I23.11 protein; chlor 62.9 7.3 0.00025 33.6 4.4 13 83-95 39-51 (262)
377 3end_A Light-independent proto 62.5 50 0.0017 28.7 10.1 26 84-110 45-77 (307)
378 3b0c_T CENP-T, centromere prot 62.5 9.6 0.00033 28.8 4.4 61 237-303 12-72 (111)
379 1nrj_B SR-beta, signal recogni 62.2 1.3 4.6E-05 36.7 -0.5 13 83-95 15-27 (218)
380 1qhl_A Protein (cell division 62.2 1.6 5.4E-05 37.6 -0.1 21 81-101 28-51 (227)
381 3lxw_A GTPase IMAP family memb 62.1 4.7 0.00016 34.6 3.0 13 83-95 24-36 (247)
382 1f2t_A RAD50 ABC-ATPase; DNA d 61.9 1.5 5.1E-05 34.8 -0.3 19 81-99 24-45 (149)
383 2pcj_A ABC transporter, lipopr 61.8 1.7 5.7E-05 37.1 0.0 20 83-102 33-55 (224)
384 2v9p_A Replication protein E1; 61.6 1.7 6E-05 39.1 0.1 19 83-101 129-150 (305)
385 3b85_A Phosphate starvation-in 61.4 1.8 6.3E-05 36.5 0.2 13 83-95 25-37 (208)
386 2v3c_C SRP54, signal recogniti 61.3 1.3 4.3E-05 42.0 -0.9 29 82-110 101-135 (432)
387 3tif_A Uncharacterized ABC tra 61.1 1.8 6.2E-05 37.2 0.1 20 83-102 34-56 (235)
388 2ffh_A Protein (FFH); SRP54, s 60.9 5.7 0.0002 37.4 3.6 14 82-95 100-113 (425)
389 3fvq_A Fe(3+) IONS import ATP- 60.9 1.8 6.1E-05 40.0 0.1 19 83-101 33-54 (359)
390 2zj8_A DNA helicase, putative 60.8 11 0.00039 37.5 6.0 29 82-110 41-76 (720)
391 1ah9_A IF1, initiation factor 60.7 17 0.0006 24.8 5.2 47 3-49 9-57 (71)
392 2onk_A Molybdate/tungstate ABC 60.6 1.9 6.3E-05 37.3 0.1 19 83-101 27-48 (240)
393 1np6_A Molybdopterin-guanine d 60.2 1.5 5.3E-05 35.9 -0.5 13 83-95 9-21 (174)
394 2ykg_A Probable ATP-dependent 60.2 16 0.00056 35.9 7.0 13 83-95 31-43 (696)
395 2zpa_A Uncharacterized protein 60.0 9.2 0.00032 38.2 5.0 14 82-95 194-207 (671)
396 3hjn_A DTMP kinase, thymidylat 59.7 1.6 5.6E-05 36.4 -0.4 26 84-109 4-35 (197)
397 1rj9_A FTSY, signal recognitio 59.5 2 6.8E-05 38.6 0.1 14 82-95 104-117 (304)
398 2xtp_A GTPase IMAP family memb 59.5 17 0.00058 30.9 6.2 13 83-95 25-37 (260)
399 2ly8_A Budding yeast chaperone 59.1 14 0.00049 28.3 4.9 33 271-303 80-112 (121)
400 2yyz_A Sugar ABC transporter, 58.9 2.1 7.1E-05 39.5 0.1 19 83-101 32-53 (359)
401 2cbz_A Multidrug resistance-as 58.8 2.1 7.2E-05 36.8 0.1 15 85-99 36-53 (237)
402 2ged_A SR-beta, signal recogni 58.8 1.7 5.7E-05 35.2 -0.5 14 82-95 50-63 (193)
403 3i4o_A Translation initiation 58.8 17 0.00059 25.6 4.9 51 2-52 16-68 (79)
404 1b0u_A Histidine permease; ABC 58.5 2.1 7.2E-05 37.4 0.1 20 83-102 35-57 (262)
405 3t34_A Dynamin-related protein 58.5 10 0.00035 34.4 4.8 13 83-95 37-49 (360)
406 2it1_A 362AA long hypothetical 58.3 2.1 7.3E-05 39.5 0.1 19 83-101 32-53 (362)
407 3rlf_A Maltose/maltodextrin im 58.1 2.2 7.4E-05 39.7 0.1 19 83-101 32-53 (381)
408 1ko7_A HPR kinase/phosphatase; 58.1 2.1 7E-05 38.8 -0.0 41 267-307 264-304 (314)
409 2f9l_A RAB11B, member RAS onco 57.9 1.8 6E-05 35.5 -0.5 18 83-100 8-28 (199)
410 1c4o_A DNA nucleotide excision 57.8 21 0.00072 35.5 7.3 28 84-111 32-62 (664)
411 1g6h_A High-affinity branched- 57.8 2.2 7.6E-05 37.1 0.1 15 85-99 38-55 (257)
412 1z47_A CYSA, putative ABC-tran 57.7 2.2 7.7E-05 39.2 0.1 19 83-101 44-65 (355)
413 3aez_A Pantothenate kinase; tr 57.4 2.2 7.6E-05 38.4 0.0 57 216-277 212-270 (312)
414 1v43_A Sugar-binding transport 57.2 2.3 7.9E-05 39.4 0.1 19 83-101 40-61 (372)
415 3b9q_A Chloroplast SRP recepto 57.1 1.8 6.2E-05 38.8 -0.6 19 82-100 102-123 (302)
416 1g29_1 MALK, maltose transport 57.0 2.3 8E-05 39.3 0.1 19 83-101 32-53 (372)
417 1ewq_A DNA mismatch repair pro 56.9 3.1 0.0001 42.4 1.0 16 80-95 576-591 (765)
418 2pze_A Cystic fibrosis transme 56.8 2.7 9.1E-05 35.9 0.4 20 82-101 36-58 (229)
419 4gl2_A Interferon-induced heli 56.7 3 0.0001 41.3 0.9 14 82-95 24-37 (699)
420 2wfw_A ARC; ATP-binding protei 56.7 20 0.00067 28.7 5.4 54 3-58 10-63 (153)
421 1ji0_A ABC transporter; ATP bi 56.6 2.4 8.2E-05 36.5 0.1 19 83-101 35-56 (240)
422 1sgw_A Putative ABC transporte 56.6 2.4 8.2E-05 36.0 0.1 15 85-99 40-57 (214)
423 2zej_A Dardarin, leucine-rich 56.6 1.7 5.8E-05 35.1 -0.8 16 84-99 6-24 (184)
424 4ddu_A Reverse gyrase; topoiso 56.6 8.6 0.0003 40.8 4.4 19 132-150 192-210 (1104)
425 1dek_A Deoxynucleoside monopho 56.5 2.5 8.4E-05 36.7 0.2 22 84-105 5-29 (241)
426 1kao_A RAP2A; GTP-binding prot 56.4 1.7 5.7E-05 33.8 -0.9 13 83-95 6-18 (167)
427 2v1x_A ATP-dependent DNA helic 56.3 5.7 0.0002 39.0 2.8 13 83-95 62-74 (591)
428 1oix_A RAS-related protein RAB 56.1 1.9 6.4E-05 35.2 -0.6 18 83-100 32-52 (191)
429 1mv5_A LMRA, multidrug resista 56.0 2.5 8.4E-05 36.5 0.1 20 82-101 30-52 (243)
430 2dyk_A GTP-binding protein; GT 55.9 1.7 5.9E-05 33.7 -0.9 12 84-95 5-16 (161)
431 2e87_A Hypothetical protein PH 55.8 30 0.001 31.2 7.5 14 82-95 169-182 (357)
432 1taf_A TFIID TBP associated fa 55.8 19 0.00065 24.6 4.6 36 267-302 30-65 (68)
433 1odf_A YGR205W, hypothetical 3 55.8 2.1 7.1E-05 38.2 -0.4 20 83-102 34-56 (290)
434 2oqk_A Putative translation in 55.7 11 0.00038 28.7 3.8 48 2-49 34-82 (117)
435 1uaa_A REP helicase, protein ( 55.7 1.8 6.1E-05 43.1 -1.0 16 80-95 15-30 (673)
436 2wsm_A Hydrogenase expression/ 55.7 1.8 6.2E-05 36.0 -0.8 19 83-101 33-54 (221)
437 1yrb_A ATP(GTP)binding protein 55.6 3.1 0.0001 35.6 0.6 27 83-109 17-48 (262)
438 3gqb_B V-type ATP synthase bet 55.5 12 0.00041 35.6 4.7 57 82-144 149-223 (464)
439 2wji_A Ferrous iron transport 55.5 1.8 6.1E-05 34.3 -0.8 13 83-95 6-18 (165)
440 3q72_A GTP-binding protein RAD 55.4 1.8 6E-05 33.9 -0.9 12 84-95 6-17 (166)
441 2nzj_A GTP-binding protein REM 55.4 1.8 6.1E-05 34.1 -0.9 13 83-95 7-19 (175)
442 2ff7_A Alpha-hemolysin translo 55.2 2.6 8.9E-05 36.5 0.1 15 85-99 40-57 (247)
443 1z2a_A RAS-related protein RAB 55.2 1.8 6.2E-05 33.8 -0.8 13 83-95 8-20 (168)
444 3gfo_A Cobalt import ATP-bindi 55.1 2.6 8.9E-05 37.2 0.1 15 85-99 39-56 (275)
445 2olj_A Amino acid ABC transpor 54.9 2.6 9E-05 36.9 0.1 15 85-99 55-72 (263)
446 2d2e_A SUFC protein; ABC-ATPas 54.8 2.7 9.2E-05 36.4 0.1 15 85-99 34-51 (250)
447 2ce2_X GTPase HRAS; signaling 54.8 1.8 6.2E-05 33.5 -0.9 13 83-95 6-18 (166)
448 1vc3_B L-aspartate-alpha-decar 54.7 3.7 0.00013 30.2 0.8 52 84-149 35-91 (96)
449 3q85_A GTP-binding protein REM 54.7 1.9 6.4E-05 33.8 -0.8 13 83-95 5-17 (169)
450 4a2q_A RIG-I, retinoic acid in 54.5 19 0.00066 36.4 6.5 14 82-95 265-278 (797)
451 2c61_A A-type ATP synthase non 54.5 5.9 0.0002 37.9 2.4 22 82-103 154-178 (469)
452 1wms_A RAB-9, RAB9, RAS-relate 54.5 1.9 6.5E-05 34.1 -0.9 13 83-95 10-22 (177)
453 3o8b_A HCV NS3 protease/helica 54.4 28 0.00097 34.7 7.5 28 83-111 235-266 (666)
454 4dzz_A Plasmid partitioning pr 54.3 11 0.00038 30.5 3.9 56 87-144 9-83 (206)
455 4g1u_C Hemin import ATP-bindin 54.2 2.7 9.1E-05 36.9 0.0 15 85-99 42-59 (266)
456 3sop_A Neuronal-specific septi 54.0 2.7 9.3E-05 36.9 0.1 18 84-101 6-26 (270)
457 2ghi_A Transport protein; mult 54.0 45 0.0016 28.7 8.1 36 129-174 166-201 (260)
458 1ek0_A Protein (GTP-binding pr 54.0 2 6.7E-05 33.6 -0.8 13 83-95 6-18 (170)
459 3qks_A DNA double-strand break 54.0 2.4 8.3E-05 35.4 -0.3 21 81-101 24-47 (203)
460 3l9o_A ATP-dependent RNA helic 54.0 6.4 0.00022 41.8 2.9 30 82-111 201-236 (1108)
461 2vp4_A Deoxynucleoside kinase; 53.8 2.7 9.4E-05 35.6 0.0 18 83-100 23-43 (230)
462 1u8z_A RAS-related protein RAL 53.8 2 6.8E-05 33.4 -0.8 13 83-95 7-19 (168)
463 3mfy_A V-type ATP synthase alp 53.7 3 0.0001 40.7 0.3 23 82-104 229-254 (588)
464 2ipc_A Preprotein translocase 53.6 31 0.0011 35.8 7.6 19 77-95 84-107 (997)
465 2qi9_C Vitamin B12 import ATP- 53.6 3.2 0.00011 36.0 0.4 20 82-101 28-50 (249)
466 1pui_A ENGB, probable GTP-bind 53.6 2 6.7E-05 35.3 -0.9 13 83-95 29-41 (210)
467 2gj8_A MNME, tRNA modification 53.5 2.3 7.8E-05 34.0 -0.5 17 83-99 7-26 (172)
468 2nq2_C Hypothetical ABC transp 53.4 2.9 0.0001 36.3 0.1 19 83-101 34-55 (253)
469 1d7q_A Translation initiation 53.4 25 0.00087 27.8 5.6 51 2-52 33-84 (143)
470 3ice_A Transcription terminati 53.3 6.5 0.00022 36.9 2.4 45 3-47 54-103 (422)
471 2ghi_A Transport protein; mult 53.3 2.9 0.0001 36.5 0.1 20 82-101 48-70 (260)
472 1g16_A RAS-related protein SEC 53.2 2 6.9E-05 33.6 -0.9 13 83-95 6-18 (170)
473 2ihy_A ABC transporter, ATP-bi 53.0 3.3 0.00011 36.6 0.4 20 82-101 49-71 (279)
474 1ky3_A GTP-binding protein YPT 53.0 2.1 7.1E-05 33.9 -0.9 13 83-95 11-23 (182)
475 1svi_A GTP-binding protein YSX 53.0 2.4 8.1E-05 34.2 -0.5 13 83-95 26-38 (195)
476 1z0j_A RAB-22, RAS-related pro 52.9 2.1 7.1E-05 33.5 -0.9 13 83-95 9-21 (170)
477 1vpl_A ABC transporter, ATP-bi 52.9 3 0.0001 36.4 0.1 15 85-99 46-63 (256)
478 2zu0_C Probable ATP-dependent 52.9 3 0.0001 36.6 0.1 15 85-99 51-68 (267)
479 3ea0_A ATPase, para family; al 52.8 50 0.0017 27.3 8.0 40 200-241 119-158 (245)
480 3gd7_A Fusion complex of cysti 52.8 3 0.0001 38.9 0.1 18 83-100 50-70 (390)
481 3k53_A Ferrous iron transport 52.7 2.4 8.3E-05 36.9 -0.5 12 84-95 7-18 (271)
482 2j9r_A Thymidine kinase; TK1, 52.6 3.7 0.00013 34.9 0.7 27 83-109 31-63 (214)
483 2yz2_A Putative ABC transporte 52.5 3.1 0.0001 36.4 0.1 15 85-99 38-55 (266)
484 2ixe_A Antigen peptide transpo 52.5 3.5 0.00012 36.3 0.5 18 85-102 50-70 (271)
485 2wjg_A FEOB, ferrous iron tran 52.5 2.4 8.3E-05 33.9 -0.5 17 83-99 10-29 (188)
486 2erx_A GTP-binding protein DI- 52.5 2.1 7.3E-05 33.4 -0.9 13 83-95 6-18 (172)
487 1gm5_A RECG; helicase, replica 52.5 11 0.00038 38.4 4.2 28 84-111 393-426 (780)
488 1z08_A RAS-related protein RAB 52.4 2.1 7.2E-05 33.5 -0.9 13 83-95 9-21 (170)
489 3gqb_A V-type ATP synthase alp 52.3 3.6 0.00012 40.2 0.5 24 82-105 223-249 (578)
490 3vr4_D V-type sodium ATPase su 52.2 6.1 0.00021 37.6 2.1 22 82-103 153-177 (465)
491 2xgj_A ATP-dependent RNA helic 52.1 26 0.00087 36.8 7.0 30 82-111 103-138 (1010)
492 3d31_A Sulfate/molybdate ABC t 52.1 2.1 7.1E-05 39.3 -1.1 19 83-101 29-50 (348)
493 4a2w_A RIG-I, retinoic acid in 51.9 33 0.0011 35.5 7.9 13 83-95 266-278 (936)
494 3cr8_A Sulfate adenylyltranfer 51.9 2.3 8E-05 41.5 -0.8 34 82-115 371-411 (552)
495 1lw7_A Transcriptional regulat 51.8 2.9 0.0001 38.2 -0.2 23 82-104 172-197 (365)
496 3ch4_B Pmkase, phosphomevalona 51.7 3.4 0.00012 34.9 0.2 33 83-115 14-50 (202)
497 1oyw_A RECQ helicase, ATP-depe 51.6 7.4 0.00025 37.5 2.7 13 83-95 43-55 (523)
498 3llm_A ATP-dependent RNA helic 51.5 2.6 8.8E-05 35.8 -0.5 14 82-95 78-91 (235)
499 4f92_B U5 small nuclear ribonu 51.4 37 0.0013 37.8 8.5 29 82-110 944-980 (1724)
500 1moz_A ARL1, ADP-ribosylation 51.4 2.2 7.4E-05 34.0 -1.0 13 83-95 21-33 (183)
No 1
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-68 Score=506.10 Aligned_cols=298 Identities=70% Similarity=1.066 Sum_probs=286.6
Q ss_pred CeEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEee
Q psy7780 1 MSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLR 78 (317)
Q Consensus 1 ~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~ 78 (317)
+.||+|+|++|+++++|+++++++|++.+.++++++.++||++|++|.++..+++++|++.|+.+..|..+ |+++|+|
T Consensus 104 ~~~g~~~~~~~~~~~iv~~~~~~~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~D 183 (437)
T 4b4t_I 104 LSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSD 183 (437)
T ss_dssp EEEEEEEEECTTSEEEEECSSSCCCEEECCTTSCGGGCCTTCEEEECTTTCCEEEEECCCSSCCCCCCEEESSCCCCGGG
T ss_pred ceeEEEEEEecCCEEEEEcCCCCEEEEecccccCHhHccCCcEEEEeccCccceeecCCccCCcceeeeeccCCCCccee
Confidence 36899999999999999999999999999999999999999999999999999999999999999887655 9999999
Q ss_pred chh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHH
Q psy7780 79 VVG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKL 124 (317)
Q Consensus 79 i~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~ 124 (317)
||| ++|||||||||||+ |+|++++++|+.++++++.++|+|++++.
T Consensus 184 IgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ 263 (437)
T 4b4t_I 184 IGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRL 263 (437)
T ss_dssp TCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHH
Confidence 999 68999999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEE
Q psy7780 125 VRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKV 204 (317)
Q Consensus 125 l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 204 (317)
++.+|..|++++||||||||+|+++++|...+.+++.+..++++++|+++|++... ++|+|
T Consensus 264 ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~-------------------~~ViV 324 (437)
T 4b4t_I 264 CRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR-------------------GDVKV 324 (437)
T ss_dssp HHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS-------------------SSEEE
T ss_pred HHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC-------------------CCEEE
Confidence 99999999999999999999999999998777777788899999999999999877 88999
Q ss_pred EEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q psy7780 205 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMAL 284 (317)
Q Consensus 205 I~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~ 284 (317)
|+|||+|+.|||||+||||||++|+|++|+.++|.+||+.|++++++..++|++.+|..|+||||+||+++|++|++.|+
T Consensus 325 IaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Ai 404 (437)
T 4b4t_I 325 IMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLAL 404 (437)
T ss_dssp EEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred EEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcCHHHHHHHHHHHHhhhccCCCCCCCC
Q psy7780 285 RERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL 317 (317)
Q Consensus 285 ~~~~~~it~~d~~~al~~v~~~~~~~~~~~~~~ 317 (317)
++++..|+++||.+|+++++........+.+|+
T Consensus 405 r~~~~~It~eDf~~Al~rv~~~~~~e~le~lYl 437 (437)
T 4b4t_I 405 RERRMQVTAEDFKQAKERVMKNKVEENLEGLYL 437 (437)
T ss_dssp HTTCSCBCHHHHHHHHHHHHHHHCCCSSSSCCC
T ss_pred HcCCCccCHHHHHHHHHHHhCCCChhhHHhhcC
Confidence 999999999999999999999888888899996
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-66 Score=492.66 Aligned_cols=290 Identities=43% Similarity=0.747 Sum_probs=277.6
Q ss_pred eEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEeec
Q psy7780 2 SVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLRV 79 (317)
Q Consensus 2 ~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~i 79 (317)
+||++.+.+++++++|+++++++|++.+.++++++.++||++|.++.++..+++++|.++++.+..+... |+++|+||
T Consensus 71 ~v~~~~~~~~~~~~iv~~~~~~~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~dI 150 (405)
T 4b4t_J 71 YVGEVIKIVSDKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMV 150 (405)
T ss_dssp EEEEEEEECTTSCEEEEESSSCEEEECCCTTSCTTTCCSSCEEEEETTTCSCCEECCCCCSCCTTSCEEECSCSCCGGGS
T ss_pred eEEEEEEEecCCeEEEEeCCCCEEEEecccccCHhhCCCcceeeeecccceeeeecCcccCchhhhccccCCCCCCHHHh
Confidence 6899999999999999999999999999999999999999999999999999999999999998876554 99999999
Q ss_pred hh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHH
Q psy7780 80 VG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLV 125 (317)
Q Consensus 80 ~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l 125 (317)
|| ++|||||||||||+ |+|++++++|+.++++++.++|+|++++.+
T Consensus 151 gGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~v 230 (405)
T 4b4t_J 151 GGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMV 230 (405)
T ss_dssp CSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHH
Confidence 99 67899999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEE
Q psy7780 126 RELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVI 205 (317)
Q Consensus 126 ~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI 205 (317)
+++|..|++++||||||||+|+++++|.....+++.+..++++++|++|||+.+. .+|+||
T Consensus 231 r~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-------------------~~V~vI 291 (405)
T 4b4t_J 231 RELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS-------------------KNIKII 291 (405)
T ss_dssp HHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC-------------------CCEEEE
T ss_pred HHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC-------------------CCeEEE
Confidence 9999999999999999999999999997777777788899999999999999877 889999
Q ss_pred EEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q psy7780 206 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 206 ~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~ 285 (317)
+|||+|+.||||++||||||++|+||+|+.++|.+||+.|++++++..++|+..+|+.|+||||+||+++|++|++.|++
T Consensus 292 aATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air 371 (405)
T 4b4t_J 292 MATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALR 371 (405)
T ss_dssp EEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHH
T ss_pred eccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcCHHHHHHHHHHHHhhhccC
Q psy7780 286 ERRMKVTNEDFKKSKESVLYRKKEG 310 (317)
Q Consensus 286 ~~~~~it~~d~~~al~~v~~~~~~~ 310 (317)
+++..|+++||++|+++++.+.++.
T Consensus 372 ~~~~~vt~~Df~~Al~~v~~~~~~~ 396 (405)
T 4b4t_J 372 ERRIHVTQEDFELAVGKVMNKNQET 396 (405)
T ss_dssp TTCSBCCHHHHHHHHHHHHHHHTCC
T ss_pred cCCCCcCHHHHHHHHHHHhCccccc
Confidence 9999999999999999998776553
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-63 Score=479.53 Aligned_cols=289 Identities=38% Similarity=0.670 Sum_probs=276.5
Q ss_pred eEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEeec
Q psy7780 2 SVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLRV 79 (317)
Q Consensus 2 ~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~i 79 (317)
.||++.+.+++++++|+++++++|++.+.+.+++..++||+.|.++.++..+++++|+++++.+..+... |+++|+||
T Consensus 104 ~vg~~~~~~~~~~~iv~~~~g~~~~v~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~di 183 (437)
T 4b4t_L 104 LIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGI 183 (437)
T ss_dssp EEEEEEECSSSSCEEEEETTSCEEEECBCSSSCTTSCCTTCEEEECSSSCSEEEECCCCSCCCCSSCEEEESCSSCSGGG
T ss_pred eeeeheeeecCCcEEEEECCCCEEEEecccccCHhhcCCCceeeEcccchhHHHhcCcccCchhheeeeccCCCCChhHh
Confidence 6899999999999999999999999999999999999999999999999999999999999998877665 99999999
Q ss_pred hh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHH
Q psy7780 80 VG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLV 125 (317)
Q Consensus 80 ~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l 125 (317)
|| ++|||||||||||+ |+|++++++|+.+++++++++|+|++++.+
T Consensus 184 gGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~i 263 (437)
T 4b4t_L 184 GGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARII 263 (437)
T ss_dssp CSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHH
Confidence 99 67999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEE
Q psy7780 126 RELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVI 205 (317)
Q Consensus 126 ~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI 205 (317)
+.+|..|+.++||||||||+|+++++|.+.+...+.+..+++++||++|||+.+. ++|+||
T Consensus 264 r~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-------------------~~vivI 324 (437)
T 4b4t_L 264 REMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL-------------------GQTKII 324 (437)
T ss_dssp HHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT-------------------TSSEEE
T ss_pred HHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC-------------------CCeEEE
Confidence 9999999999999999999999999998777777788899999999999999887 889999
Q ss_pred EEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Q psy7780 206 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 206 ~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~ 285 (317)
+|||+|+.|||||+||||||++|+||+|+.++|.+||+.|+++++...++|+..+|+.|+||||+||+++|++|++.|++
T Consensus 325 ~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air 404 (437)
T 4b4t_L 325 MATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIR 404 (437)
T ss_dssp EEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred EecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcCHHHHHHHHHHHHhhhcc
Q psy7780 286 ERRMKVTNEDFKKSKESVLYRKKE 309 (317)
Q Consensus 286 ~~~~~it~~d~~~al~~v~~~~~~ 309 (317)
+++..|+.+||.+|++++...++.
T Consensus 405 ~~~~~i~~~d~~~Al~~v~~~~k~ 428 (437)
T 4b4t_L 405 DDRDHINPDDLMKAVRKVAEVKKL 428 (437)
T ss_dssp TTCSSBCHHHHHHHHHHHHHTCC-
T ss_pred cCCCCCCHHHHHHHHHHHHhccCc
Confidence 999999999999999999876554
No 4
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-63 Score=475.00 Aligned_cols=296 Identities=46% Similarity=0.759 Sum_probs=278.2
Q ss_pred eEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEeec
Q psy7780 2 SVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLRV 79 (317)
Q Consensus 2 ~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~i 79 (317)
.||++.|.+|++++||+++++++|++.+.+.++++.++||+.|.++.++..++.+||.+.++.+..|... |+++|+||
T Consensus 95 ~vg~~~e~~d~~~~iv~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~di 174 (428)
T 4b4t_K 95 VIGQFLEPIDQNTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADV 174 (428)
T ss_dssp EEEEEEEEEETTEEEEEETTSCEEEECBCSSSCTTTCCTTCEEEECSSSCCEEEEECSCCCCSSCCCEEESSCSCCGGGS
T ss_pred eeeEEEEEccCCeeEEecCCCCEEEEeccccccHhhCCCCceeeeecchhhHHhhcCcccCcchhhccCCCCCCCCHHHh
Confidence 5899999999999999999999999999999999999999999999999999999999999998887655 99999999
Q ss_pred hh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHH
Q psy7780 80 VG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLV 125 (317)
Q Consensus 80 ~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l 125 (317)
|| ++|||||||||||+ |+|++++++|+.++++++.++|+|++++.+
T Consensus 175 gGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~i 254 (428)
T 4b4t_K 175 GGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMV 254 (428)
T ss_dssp CSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHH
Confidence 99 47999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEE
Q psy7780 126 RELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVI 205 (317)
Q Consensus 126 ~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI 205 (317)
+.+|..|+.++||||||||+|+++++|.+...+++.+..+++++||++|||+.+. .+|+||
T Consensus 255 r~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~-------------------~~v~vI 315 (428)
T 4b4t_K 255 RDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS-------------------TNVKVI 315 (428)
T ss_dssp HHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS-------------------CSEEEE
T ss_pred HHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC-------------------CCEEEE
Confidence 9999999999999999999999999997777777778899999999999999877 889999
Q ss_pred EEcCCCCCCCccccCCCcceeEEEeC-CCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Q psy7780 206 MATNRIETLDPALIRPGRIDRKIEFP-LPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMAL 284 (317)
Q Consensus 206 ~tTN~~~~Ld~al~rpgRf~~~I~~~-~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~ 284 (317)
+|||+|+.||||++||||||+.|+|| +|+.++|..||+.+++++++..++|++.+|..|+||||+||+++|++|++.|+
T Consensus 316 ~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~ 395 (428)
T 4b4t_K 316 MATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAV 395 (428)
T ss_dssp EEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred EecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999997 89999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcCHHHHHHHHHHHHhhhccCCCCCCC
Q psy7780 285 RERRMKVTNEDFKKSKESVLYRKKEGTPEGLY 316 (317)
Q Consensus 285 ~~~~~~it~~d~~~al~~v~~~~~~~~~~~~~ 316 (317)
++++..|+++||.+|+.+++..........+|
T Consensus 396 r~~~~~i~~~d~~~A~~~~~~~~~~~~~~d~y 427 (428)
T 4b4t_K 396 RKNRYVILQSDLEEAYATQVKTDNTVDKFDFY 427 (428)
T ss_dssp HTTCSSBCHHHHHHHHHHHSCSCCCSSCCCSC
T ss_pred HCCCCCCCHHHHHHHHHHhhCccCCccHhhhh
Confidence 99999999999999999887555443334444
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-63 Score=474.82 Aligned_cols=281 Identities=42% Similarity=0.694 Sum_probs=268.9
Q ss_pred cCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEeechh-------
Q psy7780 11 DDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLRVVG------- 81 (317)
Q Consensus 11 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~i~g------- 81 (317)
++++.+|+.+++++|+|.+.+.++++.|+||++|.+|.+++.++.+||.++|+.+..|+.+ |+++|+||||
T Consensus 141 ~~~~~~v~~~~~~~~~v~~~~~~~~~~l~~g~~v~l~~~~~~i~~~lp~~~d~~v~~m~v~e~P~vt~~DIgGl~~~k~~ 220 (467)
T 4b4t_H 141 EDAKYVINLKQIAKFVVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEK 220 (467)
T ss_dssp CCCCCEEEETTSCCBCCCCCTTCCSSSCCTTCEECSCTTSCCCCCSSCSSSCCCCCCCEEESSCSCCCSSCTTCHHHHHH
T ss_pred CCCcEEEEecCCCeEEEecCCcCCHHHCCCCCEEEEccCcceeeecCCCccCCccceeeecCCCCCCHHHhccHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999988765 9999999999
Q ss_pred ------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 ------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
++|||||||||||+ |+|++++++|+.+++++++++|+|++++.++.+|..|+.
T Consensus 221 L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~ 300 (467)
T 4b4t_H 221 LREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMART 300 (467)
T ss_dssp HHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHh
Confidence 67999999999999 999999999999999999999999999999999999999
Q ss_pred hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCC
Q psy7780 135 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETL 214 (317)
Q Consensus 135 ~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~L 214 (317)
++||||||||+|+++.+|++.+.+......++++++|++||++... ++|+||+|||+|+.|
T Consensus 301 ~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-------------------~~ViVIaATNrpd~L 361 (467)
T 4b4t_H 301 KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR-------------------GNIKVMFATNRPNTL 361 (467)
T ss_dssp TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT-------------------TTEEEEEECSCTTSB
T ss_pred cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC-------------------CcEEEEeCCCCcccC
Confidence 9999999999999999998777777788899999999999999877 889999999999999
Q ss_pred CccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHH
Q psy7780 215 DPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNE 294 (317)
Q Consensus 215 d~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~ 294 (317)
|||++||||||++|+||+|+.++|.+||+.|++++++..+++++.+|+.|+||||+||+++|++|++.|+++++..|+++
T Consensus 362 DpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~ 441 (467)
T 4b4t_H 362 DPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEK 441 (467)
T ss_dssp CHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHH
T ss_pred ChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccC
Q psy7780 295 DFKKSKESVLYRKKEG 310 (317)
Q Consensus 295 d~~~al~~v~~~~~~~ 310 (317)
||.+|+++++...++.
T Consensus 442 Df~~Al~kV~~g~~k~ 457 (467)
T 4b4t_H 442 DFLKAVDKVISGYKKF 457 (467)
T ss_dssp HHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHhcCcccc
Confidence 9999999999876653
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-62 Score=473.01 Aligned_cols=282 Identities=46% Similarity=0.752 Sum_probs=266.9
Q ss_pred cEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhccC--CCceEeechh----------
Q psy7780 14 HAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQ--TSATFLRVVG---------- 81 (317)
Q Consensus 14 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~i~g---------- 81 (317)
.++|+++++++|++.+.+.++++.++||++|.+|.++..++++||.+.++.+..|... |+++|+||+|
T Consensus 116 ~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~~t~~digGl~~~k~~l~e 195 (434)
T 4b4t_M 116 AAVVKTSSRQTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVE 195 (434)
T ss_dssp EEEEEETTSCEEEEECCSSSCTTTSCSSEEEEECSSSCSEEEEEEESSSCSCSCCEEESSCSCCGGGSCSCHHHHHHHHH
T ss_pred eEEEEcCCCCeEEEecccccCHhHCCCCCEEeEcCcchhhheecCcccCchhhhcccCCCCCCChHhcCcHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999887665 9999999999
Q ss_pred ---------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCC
Q psy7780 82 ---------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAP 137 (317)
Q Consensus 82 ---------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P 137 (317)
++|||||||||||+ |+|++++++|+.++++++.++|+|++++.++.+|..|+.++|
T Consensus 196 ~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP 275 (434)
T 4b4t_M 196 AIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAP 275 (434)
T ss_dssp HTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCC
Confidence 67999999999999 999999999999999999999999999999999999999999
Q ss_pred ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCcc
Q psy7780 138 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPA 217 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~a 217 (317)
|||||||+|+++++|.+...++..+..+++.++|++||++.+. ++|+||+|||+|+.||||
T Consensus 276 ~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~-------------------~~ViVIaaTNrp~~LD~A 336 (434)
T 4b4t_M 276 TIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD-------------------DRVKVLAATNRVDVLDPA 336 (434)
T ss_dssp EEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS-------------------CSSEEEEECSSCCCCCTT
T ss_pred eEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC-------------------CCEEEEEeCCCchhcCHh
Confidence 9999999999999997766667778899999999999999887 889999999999999999
Q ss_pred ccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHH
Q psy7780 218 LIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFK 297 (317)
Q Consensus 218 l~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~ 297 (317)
++||||||++|+||+|+.++|.+||+.|++++++..++++..+|+.|+||||+||+++|++|++.|+++++..|+.+||.
T Consensus 337 llRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~ 416 (434)
T 4b4t_M 337 LLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFV 416 (434)
T ss_dssp TCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHH
T ss_pred HhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCCCC
Q psy7780 298 KSKESVLYRKKEGTPEGLY 316 (317)
Q Consensus 298 ~al~~v~~~~~~~~~~~~~ 316 (317)
+|++++..+.++. -.+|
T Consensus 417 ~Al~~v~~~~~~~--i~~Y 433 (434)
T 4b4t_M 417 EGISEVQARKSKS--VSFY 433 (434)
T ss_dssp HHHHSCSSSCCCC--CCCC
T ss_pred HHHHHHhCCCCcC--cccc
Confidence 9999987665543 4566
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=8.1e-47 Score=385.71 Aligned_cols=205 Identities=33% Similarity=0.587 Sum_probs=150.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++|||||||||||+ |+|++++.+|+.+++++++++|+|++++.++++|+.|++.+||||||||+|+++++|+....+
T Consensus 513 gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~ 592 (806)
T 3cf2_A 513 GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592 (806)
T ss_dssp CCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC---------
T ss_pred eEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCC
Confidence 67999999999999 999999999999999999999999999999999999999999999999999999999654444
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
.+....+++++||.+|||+.+. .+|+||+|||+||.||+|++||||||++|+||+|+.++|
T Consensus 593 ~~~~~~rv~~~lL~~mdg~~~~-------------------~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R 653 (806)
T 3cf2_A 593 GGGAADRVINQILTEMDGMSTK-------------------KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653 (806)
T ss_dssp -----CHHHHHHHHHHHSSCSS-------------------SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHH
T ss_pred CchHHHHHHHHHHHHHhCCCCC-------------------CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHH
Confidence 4445668999999999999877 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc-------------------------CCCcCH
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRER-------------------------RMKVTN 293 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~-------------------------~~~it~ 293 (317)
.+||+.++++.++..++|+..+|+.|+||||+||+++|++|++.|+++. ...|++
T Consensus 654 ~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 733 (806)
T 3cf2_A 654 VAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRR 733 (806)
T ss_dssp HHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC-----------------------CCC---
T ss_pred HHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCH
Confidence 9999999999999999999999999999999999999999999999863 125899
Q ss_pred HHHHHHHHHHHh
Q psy7780 294 EDFKKSKESVLY 305 (317)
Q Consensus 294 ~d~~~al~~v~~ 305 (317)
+||++|++++..
T Consensus 734 ~df~~al~~~~p 745 (806)
T 3cf2_A 734 DHFEEAMRFARR 745 (806)
T ss_dssp -CCTTTC-----
T ss_pred HHHHHHHHhCCC
Confidence 999999998764
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.5e-42 Score=352.58 Aligned_cols=212 Identities=37% Similarity=0.597 Sum_probs=195.5
Q ss_pred CCceEeechh-------------------------------hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhh
Q psy7780 72 TSATFLRVVG-------------------------------SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKY 117 (317)
Q Consensus 72 ~~~~~~~i~g-------------------------------~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~ 117 (317)
+.++|+||+| ++|||||||||||+ ++|++++++|+.+++++++++|
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSC
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhccc
Confidence 7799999999 57999999999999 9999999999999999999999
Q ss_pred cCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccccc
Q psy7780 118 LGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIY 197 (317)
Q Consensus 118 ~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 197 (317)
.|++++.++.+|+.|++++||||||||||+|+++|++.... ...+++.+|+.+||++.+.
T Consensus 279 ~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~---~~~riv~~LL~~mdg~~~~----------------- 338 (806)
T 3cf2_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGE---VERRIVSQLLTLMDGLKQR----------------- 338 (806)
T ss_dssp TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCT---THHHHHHHHHTHHHHCCGG-----------------
T ss_pred chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCCh---HHHHHHHHHHHHHhccccc-----------------
Confidence 99999999999999999999999999999999998554332 3357888999999999877
Q ss_pred CCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHH
Q psy7780 198 LPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 277 (317)
Q Consensus 198 ~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~ 277 (317)
++|+||+|||+++.||++|+|||||+++|+++.|+.++|.+||+.++++.++..++++..+|..|+||+|+||.++|+
T Consensus 339 --~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~ 416 (806)
T 3cf2_A 339 --AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCS 416 (806)
T ss_dssp --GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHH
T ss_pred --CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-----------------CCCcCHHHHHHHHHHHHh
Q psy7780 278 EAGLMALRER-----------------RMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 278 ~A~~~a~~~~-----------------~~~it~~d~~~al~~v~~ 305 (317)
+|++.|+++. ...++.+||..|++.+..
T Consensus 417 eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~p 461 (806)
T 3cf2_A 417 EAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNP 461 (806)
T ss_dssp HHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSC
T ss_pred HHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCC
Confidence 9999998763 235889999999887654
No 9
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=7.6e-38 Score=304.44 Aligned_cols=205 Identities=43% Similarity=0.687 Sum_probs=185.7
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++||+||||||||+ ++|++++.+|+.++++++...|.|.++..++.+|..|+..+||||||||+|.++.+++....+
T Consensus 51 gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g 130 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGG 130 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-------
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCc
Confidence 58999999999999 999999999999999999999999999999999999999999999999999999888544344
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
...+..+++.+++..+|++... .+++||++||+++.||++++|||||++.|.++.|+.++|
T Consensus 131 ~~~~~~~~l~~LL~~ld~~~~~-------------------~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R 191 (476)
T 2ce7_A 131 GHDEREQTLNQLLVEMDGFDSK-------------------EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGR 191 (476)
T ss_dssp --CHHHHHHHHHHHHHHHSCGG-------------------GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred CcHHHHHHHHHHHHHHhccCCC-------------------CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHH
Confidence 5556678899999999988765 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~ 305 (317)
.+|++.++++.++..++++..++..+.|++|+||.++|++|+..|.+++...|+.+||.+|+++++.
T Consensus 192 ~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 192 KKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp HHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHHhc
Confidence 9999999999888888999999999999999999999999999999988899999999999999874
No 10
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.4e-38 Score=288.47 Aligned_cols=202 Identities=35% Similarity=0.595 Sum_probs=174.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+++|+||||||||+ ++|.+++..++.+++.++.++|.|+.++.++.+|+.++...||++|+||+|.++..++....
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~- 124 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRET- 124 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC--------
T ss_pred eEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcc-
Confidence 36899999999999 99999999999999999999999999999999999999999999999999999877643211
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
....+.+.+++.+|++.... ..++++++||+|+.||++++||||||+.|++++|+.++|
T Consensus 125 --~~~~~~~~~~l~~Lsgg~~~-------------------~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r 183 (274)
T 2x8a_A 125 --GASVRVVNQLLTEMDGLEAR-------------------QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADR 183 (274)
T ss_dssp ----CTTHHHHHHHHHHTCCST-------------------TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHH
T ss_pred --hHHHHHHHHHHHhhhccccc-------------------CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHH
Confidence 12345678999999998766 779999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC---CCCCcCCCHHHHHHhC--CCCCHHHHHHHHHHHHHHHHHhc-----------CCCcCHHHHHHHHHH
Q psy7780 239 RRIFNIHTSR---MTLAEDVNLQELIMAK--DDLSGADIKAICTEAGLMALRER-----------RMKVTNEDFKKSKES 302 (317)
Q Consensus 239 ~~Il~~~l~~---~~~~~~~~~~~ia~~t--~g~s~~dl~~l~~~A~~~a~~~~-----------~~~it~~d~~~al~~ 302 (317)
.+||+.++++ .+...++++..++..+ +||||+||.++|++|++.|+++. ...|+++||++|+++
T Consensus 184 ~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~ 263 (274)
T 2x8a_A 184 LAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKK 263 (274)
T ss_dssp HHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTT
T ss_pred HHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHH
Confidence 9999999854 4556789999999975 59999999999999999998752 347999999999998
Q ss_pred HHh
Q psy7780 303 VLY 305 (317)
Q Consensus 303 v~~ 305 (317)
+..
T Consensus 264 ~~p 266 (274)
T 2x8a_A 264 VRS 266 (274)
T ss_dssp CCC
T ss_pred hcC
Confidence 754
No 11
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=4.2e-38 Score=290.37 Aligned_cols=204 Identities=33% Similarity=0.593 Sum_probs=181.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++||+||||||||+ ++|++++.+|+.++++++.++|.|++++.++.+|+.|+...||||||||+|.+...++.....
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~ 130 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 130 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCC
T ss_pred eEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCC
Confidence 47899999999999 999999999999999999999999999999999999999999999999999999877543222
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
......+++.+++..++++... .+++||+|||+++.||++++|||||+..|+++.|+.++|
T Consensus 131 ~~~~~~~~~~~lL~~l~~~~~~-------------------~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r 191 (301)
T 3cf0_A 131 GGGAADRVINQILTEMDGMSTK-------------------KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 191 (301)
T ss_dssp SSCSCCHHHHHHHHHHHSSCTT-------------------SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred cchHHHHHHHHHHHHhhcccCC-------------------CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHH
Confidence 2222345677889999987654 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc-------------------------CCCcCH
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRER-------------------------RMKVTN 293 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~-------------------------~~~it~ 293 (317)
.+|++.++++.++..++++..++..+.||+|+||+++|++|++.|.++. ...|+.
T Consensus 192 ~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 271 (301)
T 3cf0_A 192 VAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRR 271 (301)
T ss_dssp HHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCH
T ss_pred HHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCH
Confidence 9999999999888888999999999999999999999999999887642 136899
Q ss_pred HHHHHHHHHHH
Q psy7780 294 EDFKKSKESVL 304 (317)
Q Consensus 294 ~d~~~al~~v~ 304 (317)
+||.+|++++.
T Consensus 272 ~~~~~al~~~~ 282 (301)
T 3cf0_A 272 DHFEEAMRFAR 282 (301)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHHcC
Confidence 99999998764
No 12
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.3e-36 Score=276.99 Aligned_cols=209 Identities=55% Similarity=0.904 Sum_probs=196.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+.||+||||||||+ ++|++++.+++.++++++...+.|+.+..++.+|..++...|+||||||+|.+++++.+...+
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~ 132 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTG 132 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCG
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCC
Confidence 57899999999999 999999999999999999999999999999999999999999999999999999988766666
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
...+.++.+..+++.++++... .+++||+|||+++.+|++++||+||+..++++.|+.++|
T Consensus 133 ~~~~~~~~l~~ll~~~~~~~~~-------------------~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r 193 (285)
T 3h4m_A 133 GDREVQRTLMQLLAEMDGFDAR-------------------GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGR 193 (285)
T ss_dssp GGGHHHHHHHHHHHHHHTTCSS-------------------SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHH
T ss_pred ccHHHHHHHHHHHHHhhCCCCC-------------------CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHH
Confidence 6778889999999999988765 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhcc
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKE 309 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~~ 309 (317)
.+|++.++++..+..+.++..++..+.|++++||.++|++|...|+++++..|+.+||.+|++++...++.
T Consensus 194 ~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~~~~ 264 (285)
T 3h4m_A 194 LEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEKKKV 264 (285)
T ss_dssp HHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhcccc
Confidence 99999999988888888999999999999999999999999999999999999999999999999876644
No 13
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=2.4e-36 Score=271.72 Aligned_cols=206 Identities=36% Similarity=0.653 Sum_probs=188.8
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+++|+||||||||+ ++|++++.+++.++++++.+.+.|++++.++.+|+.|....|+++||||+|.+...+.....+
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~ 126 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGG 126 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCC
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCC
Confidence 67999999999999 999999999999999999999999999999999999999999999999999999877543333
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
...+..+.+.+++..++++... .+++||+|||+++.+|++++|||||++.++++.|+.++|
T Consensus 127 ~~~~~~~~~~~ll~~l~~~~~~-------------------~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r 187 (257)
T 1lv7_A 127 GHDEREQTLNQMLVEMDGFEGN-------------------EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGR 187 (257)
T ss_dssp TTCHHHHHHHHHHHHHHTCCSS-------------------SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHH
T ss_pred CchHHHHHHHHHHHHhhCcccC-------------------CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHH
Confidence 4445567888999999988765 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhh
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYR 306 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~ 306 (317)
.+|++.++++.++..+.++..++..+.||+++||.++|++|+..|.+++...|+.+||.+|++.+..+
T Consensus 188 ~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~ 255 (257)
T 1lv7_A 188 EQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMG 255 (257)
T ss_dssp HHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHhcC
Confidence 99999999988888888999999999999999999999999999999999999999999999988643
No 14
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.4e-36 Score=281.37 Aligned_cols=182 Identities=34% Similarity=0.550 Sum_probs=164.4
Q ss_pred hHHHhhhcCCCchh---hhhhcC-CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNS 157 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~ 157 (317)
++||+||||||||+ ++|+++ +.+|+.++++++.++|.|++++.++.+|..|+..+|+||||||+|.+++++....
T Consensus 47 ~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~- 125 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE- 125 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCC-
T ss_pred eEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccccc-
Confidence 57899999999999 999999 8999999999999999999999999999999999999999999999998875432
Q ss_pred CchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHH
Q psy7780 158 GGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 237 (317)
Q Consensus 158 ~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~ 237 (317)
.....+++.+++.+++++... ..+++||+|||+++.||++++| ||+..++++.|+.++
T Consensus 126 --~~~~~~~~~~ll~~ld~~~~~------------------~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~ 183 (322)
T 1xwi_A 126 --SEAARRIKTEFLVQMQGVGVD------------------NDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHA 183 (322)
T ss_dssp --TTHHHHHHHHHHHHHHCSSSC------------------CTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHH
T ss_pred --chHHHHHHHHHHHHHhccccc------------------CCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHH
Confidence 233567788999999998642 1689999999999999999999 999999999999999
Q ss_pred HHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q psy7780 238 KRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRE 286 (317)
Q Consensus 238 r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~ 286 (317)
|.+||+.++++.+.. .+.++..+++.|.||+|+||.++|++|++.|+++
T Consensus 184 r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~ 233 (322)
T 1xwi_A 184 RAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRK 233 (322)
T ss_dssp HHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999887654 5678999999999999999999999999999875
No 15
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=2.5e-36 Score=280.91 Aligned_cols=200 Identities=33% Similarity=0.504 Sum_probs=174.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++||+||||||||+ ++|++++.+|+.++++++.++|.|++++.++.+|..|+..+|+||||||+|.+.+++......
T Consensus 53 ~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~ 132 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESE 132 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------C
T ss_pred eEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcch
Confidence 47999999999999 999999999999999999999999999999999999999999999999999999887443322
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
...++..+++..++++... ..+++||+|||+++.||++++| ||+..++++.|+.++|
T Consensus 133 ---~~~~~~~~ll~~l~~~~~~------------------~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r 189 (322)
T 3eie_A 133 ---ASRRIKTELLVQMNGVGND------------------SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAAR 189 (322)
T ss_dssp ---CTHHHHHHHHHHHGGGGTS------------------CCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHH
T ss_pred ---HHHHHHHHHHHHhcccccc------------------CCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHH
Confidence 2345667888888887532 1679999999999999999999 9999999999999999
Q ss_pred HHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC-----------------------------
Q psy7780 239 RRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERR----------------------------- 288 (317)
Q Consensus 239 ~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~----------------------------- 288 (317)
.+||+.++++.+.. .+.++..++..+.||+|+||.++|++|.+.|+++..
T Consensus 190 ~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (322)
T 3eie_A 190 TTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAI 269 (322)
T ss_dssp HHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEE
T ss_pred HHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccc
Confidence 99999999887654 566889999999999999999999999999987631
Q ss_pred --------------CCcCHHHHHHHHHHHH
Q psy7780 289 --------------MKVTNEDFKKSKESVL 304 (317)
Q Consensus 289 --------------~~it~~d~~~al~~v~ 304 (317)
..|+++||.+|++.+.
T Consensus 270 ~~~~~~~~~~~~~~~~it~~df~~al~~~~ 299 (322)
T 3eie_A 270 EMSWTDIEADELKEPDLTIKDFLKAIKSTR 299 (322)
T ss_dssp EEEGGGSCSSCBCCCCCCHHHHHHHHHHSC
T ss_pred cccccccccccccCCCCCHHHHHHHHHhcC
Confidence 3499999999998764
No 16
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=1.5e-35 Score=289.80 Aligned_cols=206 Identities=41% Similarity=0.660 Sum_probs=189.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+++|+||||||||+ ++|++++.+|+.++++++...+.|...+.++.+|+.++...|||+||||+|.++.+++....+
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~ 145 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGG 145 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCC
Confidence 47999999999999 999999999999999999999999999999999999988899999999999999877543233
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
...+..+++++++.+|++.... ..+++|++||+|+.||++++|||||++.|+++.|+.++|
T Consensus 146 ~~~e~~~~l~~LL~~Ldg~~~~-------------------~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R 206 (499)
T 2dhr_A 146 GNDEREQTLNQLLVEMDGFEKD-------------------TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGR 206 (499)
T ss_dssp SSHHHHHHHHHHHHHGGGCCSS-------------------CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHH
T ss_pred CcHHHHHHHHHHHHHhcccccC-------------------ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHH
Confidence 4556678899999999998765 679999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhh
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYR 306 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~ 306 (317)
.+||+.++++.++..++++..++..+.|++|+||+++|++|+..|.+++...|+.+||.+|+++++..
T Consensus 207 ~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 207 EQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRVMML 274 (499)
T ss_dssp HHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcc
Confidence 99999999988888889999999999999999999999999999998888899999999999998764
No 17
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=100.00 E-value=2.6e-34 Score=258.02 Aligned_cols=199 Identities=42% Similarity=0.671 Sum_probs=176.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGG 159 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~ 159 (317)
++|+||||||||+ ++|++++..++.+++.++...+.++..+.++.+|+.+....|+++++||+|.++..+.......
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~ 131 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 131 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcccccc
Confidence 6899999999999 9999999999999999999888888888999999999888899999999999987764322223
Q ss_pred hhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHH
Q psy7780 160 EREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKR 239 (317)
Q Consensus 160 ~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~ 239 (317)
..+..+.+.+++.++++.... ..++++++||+|+.||++++|||||++.++++.|+.++|.
T Consensus 132 ~~~~~~~~~~ll~~l~g~~~~-------------------~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~ 192 (254)
T 1ixz_A 132 NDEREQTLNQLLVEMDGFEKD-------------------TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGRE 192 (254)
T ss_dssp CHHHHHHHHHHHHHHHTCCTT-------------------CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCC-------------------CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHH
Confidence 445667888999999987655 6789999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q psy7780 240 RIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSK 300 (317)
Q Consensus 240 ~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al 300 (317)
+||+.+.++.++..+.++..++..+.|++|+||.++|++|+..|.+++...|+.+||++|+
T Consensus 193 ~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 193 QILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 9999999888888889999999999999999999999999999999888899999999885
No 18
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=7.9e-35 Score=274.54 Aligned_cols=200 Identities=33% Similarity=0.497 Sum_probs=170.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++||+||||||||+ ++|++++.+|+.++++++.++|.|+.++.++.+|..|+...|+||||||+|.+.+.+....
T Consensus 86 ~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~-- 163 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE-- 163 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--------
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCc--
Confidence 47899999999999 9999999999999999999999999999999999999999999999999999998874332
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
.....++..+++..++++.... .+++||+|||+++.||++++| ||+..++++.|+.++|
T Consensus 164 -~~~~~~~~~~ll~~l~~~~~~~------------------~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r 222 (355)
T 2qp9_X 164 -SEASRRIKTELLVQMNGVGNDS------------------QGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAAR 222 (355)
T ss_dssp -CTHHHHHHHHHHHHHHHCC---------------------CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHH
T ss_pred -chHHHHHHHHHHHHhhcccccC------------------CCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHH
Confidence 2234566778888888875421 679999999999999999999 9999999999999999
Q ss_pred HHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc------------------------------
Q psy7780 239 RRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRER------------------------------ 287 (317)
Q Consensus 239 ~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~------------------------------ 287 (317)
.+||+.++++.+.. .+.++..++..|.||+|+||.++|++|++.|+++.
T Consensus 223 ~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (355)
T 2qp9_X 223 TTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAI 302 (355)
T ss_dssp HHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEE
T ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchh
Confidence 99999999887653 56778999999999999999999999999999762
Q ss_pred -------------CCCcCHHHHHHHHHHHH
Q psy7780 288 -------------RMKVTNEDFKKSKESVL 304 (317)
Q Consensus 288 -------------~~~it~~d~~~al~~v~ 304 (317)
...|+++||..|++.+.
T Consensus 303 ~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ 332 (355)
T 2qp9_X 303 EMSWTDIEADELKEPDLTIKDFLKAIKSTR 332 (355)
T ss_dssp ECCGGGSCGGGBCCCCBCHHHHHHHHHHSC
T ss_pred hcccccccccccccCCccHHHHHHHHHHcC
Confidence 13599999999999864
No 19
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=4.5e-35 Score=263.04 Aligned_cols=208 Identities=39% Similarity=0.586 Sum_probs=166.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++||+||||||||+ ++|++++.+++.++++++.+.+.|.++..++.+|..+....|+||||||+|.++.++.....+
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~ 120 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSG 120 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccC
Confidence 68999999999999 999999999999999999999999999999999999999999999999999998877432211
Q ss_pred -chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHH
Q psy7780 159 -GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 237 (317)
Q Consensus 159 -~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~ 237 (317)
...+.+..+.+++..+++.... .++++|+|||.++.+|++++|||||+..++++.|+.++
T Consensus 121 ~~~~~~~~~l~~ll~~~~~~~~~-------------------~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~ 181 (262)
T 2qz4_A 121 FSNTEEEQTLNQLLVEMDGMGTT-------------------DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQE 181 (262)
T ss_dssp ------CHHHHHHHHHHHTCCTT-------------------CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHH
T ss_pred ccchhHHHHHHHHHHHhhCcCCC-------------------CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHH
Confidence 1334557788999999987654 78999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcCC--CHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhc
Q psy7780 238 KRRIFNIHTSRMTLAEDV--NLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKK 308 (317)
Q Consensus 238 r~~Il~~~l~~~~~~~~~--~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~ 308 (317)
|.+|++.++++.+...+. .+..++..+.|++++||.++|++|+..|.+++...|+.+||.+|++++.....
T Consensus 182 r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~~~ 254 (262)
T 2qz4_A 182 RREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERVLAGTA 254 (262)
T ss_dssp HHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhccChh
Confidence 999999999877665433 34789999999999999999999999999988899999999999999886543
No 20
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=7.8e-34 Score=277.78 Aligned_cols=203 Identities=38% Similarity=0.598 Sum_probs=183.1
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGG 159 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~ 159 (317)
+||+||||||||+ ++|++++.+|+.++|+++.+.+.|+.+..++.+|..|...+|+||||||||.+.++++...
T Consensus 241 vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~--- 317 (489)
T 3hu3_A 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--- 317 (489)
T ss_dssp EEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCC---
T ss_pred EEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhcccccccc---
Confidence 7899999999999 9999999999999999999999999999999999999999999999999999998874332
Q ss_pred hhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHH
Q psy7780 160 EREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKR 239 (317)
Q Consensus 160 ~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~ 239 (317)
.....++..+|+..+++.... .+++||+|||+++.||++++|+|||+..|+++.|+.++|.
T Consensus 318 ~~~~~~~~~~LL~~ld~~~~~-------------------~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~ 378 (489)
T 3hu3_A 318 GEVERRIVSQLLTLMDGLKQR-------------------AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378 (489)
T ss_dssp CHHHHHHHHHHHHHHHHSCTT-------------------SCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHH
T ss_pred chHHHHHHHHHHHHhhccccC-------------------CceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHH
Confidence 223345667888888877655 7899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC-----------------CcCHHHHHHHHHH
Q psy7780 240 RIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM-----------------KVTNEDFKKSKES 302 (317)
Q Consensus 240 ~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~-----------------~it~~d~~~al~~ 302 (317)
+||+.++++.++..+.++..++..+.||+++||.++|++|++.|+++... .|+++||.+|+++
T Consensus 379 ~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~ 458 (489)
T 3hu3_A 379 EILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 458 (489)
T ss_dssp HHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTS
T ss_pred HHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHh
Confidence 99999999998888899999999999999999999999999999987532 5899999999998
Q ss_pred HHhhh
Q psy7780 303 VLYRK 307 (317)
Q Consensus 303 v~~~~ 307 (317)
+....
T Consensus 459 ~~ps~ 463 (489)
T 3hu3_A 459 SNPSA 463 (489)
T ss_dssp HHHHH
T ss_pred CCchh
Confidence 87543
No 21
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=5e-34 Score=276.58 Aligned_cols=182 Identities=35% Similarity=0.556 Sum_probs=154.2
Q ss_pred hHHHhhhcCCCchh---hhhhcC-CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNS 157 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~ 157 (317)
++||+||||||||+ ++|+++ +.+|+.++++++.++|.|++++.++.+|..|+..+|+||||||+|.+++.+.....
T Consensus 169 ~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~ 248 (444)
T 2zan_A 169 GILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENES 248 (444)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccc
Confidence 36899999999999 999999 89999999999999999999999999999999999999999999999988754322
Q ss_pred CchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHH
Q psy7780 158 GGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 237 (317)
Q Consensus 158 ~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~ 237 (317)
....+++.++|..++++... +.+++||+|||+++.||++++| ||+..++++.|+.++
T Consensus 249 ---~~~~~~~~~lL~~l~~~~~~------------------~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~ 305 (444)
T 2zan_A 249 ---EAARRIKTEFLVQMQGVGVD------------------NDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHA 305 (444)
T ss_dssp ---GGGHHHHHHHHTTTTCSSCC------------------CSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHH
T ss_pred ---cHHHHHHHHHHHHHhCcccC------------------CCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHH
Confidence 23456778999999987542 1679999999999999999999 999999999999999
Q ss_pred HHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Q psy7780 238 KRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRE 286 (317)
Q Consensus 238 r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~ 286 (317)
|..||+.++.+.+.. .+.++..++..|.||+|+||.++|++|++.|+++
T Consensus 306 r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~ 355 (444)
T 2zan_A 306 RAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRK 355 (444)
T ss_dssp HHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999887653 5678999999999999999999999999999875
No 22
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=100.00 E-value=1.4e-32 Score=250.34 Aligned_cols=199 Identities=42% Similarity=0.671 Sum_probs=176.5
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGG 159 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~ 159 (317)
++|+||||||||+ ++|+.++..++.+++.++...+.+...+.++.+|+.+....|+++++||+|.++..+.......
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~ 155 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGG 155 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------
T ss_pred EEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCc
Confidence 6899999999999 9999999999999999999888888888999999999988899999999999987664322223
Q ss_pred hhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHH
Q psy7780 160 EREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKR 239 (317)
Q Consensus 160 ~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~ 239 (317)
..+..+.+.+++.++++.... ..++++++||+|+.||++++||+||++.|+++.|+.++|.
T Consensus 156 ~~~~~~~~~~ll~~lsgg~~~-------------------~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~ 216 (278)
T 1iy2_A 156 NDEREQTLNQLLVEMDGFEKD-------------------TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGRE 216 (278)
T ss_dssp CHHHHHHHHHHHHHHTTCCTT-------------------CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCC-------------------CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHH
Confidence 345677888999999987654 6789999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHH
Q psy7780 240 RIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSK 300 (317)
Q Consensus 240 ~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al 300 (317)
+||+.++++.++..++++..++..+.|++++||+++|++|+..|.+++...|+.+||.+|+
T Consensus 217 ~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 217 QILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 9999999888888888999999999999999999999999999998888899999999885
No 23
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.98 E-value=2.3e-35 Score=304.50 Aligned_cols=187 Identities=36% Similarity=0.633 Sum_probs=165.8
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+.||+||||||||+ ++|++++.+|+.++++++.++|+|++++.++.+|+.|+...||||||||+|.++..|+.....
T Consensus 513 ~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~ 592 (806)
T 1ypw_A 513 GVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592 (806)
T ss_dssp CCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSH
T ss_pred eeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCC
Confidence 57999999999999 999999999999999999999999999999999999999999999999999999988654444
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
......+++.+||.+||++... .+++||+|||+++.||+|++|||||+..|+||.|+.++|
T Consensus 593 ~~~~~~~v~~~LL~~ld~~~~~-------------------~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r 653 (806)
T 1ypw_A 593 GGGAADRVINQILTEMDGMSTK-------------------KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSR 653 (806)
T ss_dssp HHHHHHHHHHHHHTTCC-------------------------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHH
T ss_pred cchhHHHHHHHHHHHHhccccc-------------------CCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHH
Confidence 4456678889999999998766 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRER 287 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~ 287 (317)
.+||+.++++.++..++++..+++.+.|||++||.++|++|++.|+++.
T Consensus 654 ~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 654 VAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp HHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888889999999999999999999999999999998764
No 24
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.98 E-value=5.1e-35 Score=264.34 Aligned_cols=210 Identities=40% Similarity=0.613 Sum_probs=178.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCC-
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNS- 157 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~- 157 (317)
++||+||||||||+ ++|++++.+|+.++++++.+.+.|.++..++.+|+.|....|+||||||+|.+...+...+.
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~ 125 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVV 125 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC--------
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccC
Confidence 58999999999999 99999999999999999999999999889999999999999999999999999887632211
Q ss_pred CchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHH
Q psy7780 158 GGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 237 (317)
Q Consensus 158 ~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~ 237 (317)
.......+.+.+++..+++.... ..+++||+|||+++.||++++|+|||+..++++.|+.++
T Consensus 126 ~~~~~~~~~~~~ll~~l~~~~~~------------------~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~ 187 (268)
T 2r62_A 126 SGNDEREQTLNQLLAEMDGFGSE------------------NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNG 187 (268)
T ss_dssp --CCCSCSSTTTTTTTTTCSSCS------------------CSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTT
T ss_pred CCchhHHHHHHHHHHHhhCcccC------------------CCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHH
Confidence 11111223556777777776543 156999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhcc
Q psy7780 238 KRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKE 309 (317)
Q Consensus 238 r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~~ 309 (317)
|.+||+.++++.++..+.++..++..+.|++|+||.++|++|.+.|.+++...|+.+|+.+|++++....+.
T Consensus 188 r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~~~ 259 (268)
T 2r62_A 188 RVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVERGIAGLEK 259 (268)
T ss_dssp HHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTTCCCCCC-
T ss_pred HHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHhhcchh
Confidence 999999999988877888899999999999999999999999999988888899999999999887765544
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.6e-31 Score=252.13 Aligned_cols=202 Identities=32% Similarity=0.512 Sum_probs=171.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++||+||||||||+ ++|++++.+|+.++++++..+|.|+.+..++.+|..++...|+||||||+|.+...+...
T Consensus 119 ~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~--- 195 (357)
T 3d8b_A 119 GILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG--- 195 (357)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-------
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC---
Confidence 35789999999999 999999999999999999999999999999999999999999999999999999877432
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
......+++.+++..+++..... +.+++||+|||+++.||++++| ||+..++++.|+.++|
T Consensus 196 ~~~~~~~~~~~lL~~l~~~~~~~-----------------~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r 256 (357)
T 3d8b_A 196 EHESSRRIKTEFLVQLDGATTSS-----------------EDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASAR 256 (357)
T ss_dssp --CHHHHHHHHHHHHHHC----C-----------------CCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHH
T ss_pred cchHHHHHHHHHHHHHhcccccC-----------------CCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHH
Confidence 22334567788899988865321 1679999999999999999999 9999999999999999
Q ss_pred HHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc------------CCCcCHHHHHHHHHHHHh
Q psy7780 239 RRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRER------------RMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 239 ~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~------------~~~it~~d~~~al~~v~~ 305 (317)
.+|++.++++.+.. .+.++..++..+.||+++||..+|++|.+.++++- ...|+.+||.+|++++..
T Consensus 257 ~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~p 336 (357)
T 3d8b_A 257 KQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRP 336 (357)
T ss_dssp HHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGG
T ss_pred HHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCC
Confidence 99999998765443 34568889999999999999999999999988753 357999999999998864
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.97 E-value=2.1e-31 Score=244.12 Aligned_cols=202 Identities=36% Similarity=0.549 Sum_probs=168.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++||+||||||||+ ++|++++.+|+.++++++...+.|+++..++.+|..+....|+||||||+|.+...+......
T Consensus 56 ~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~ 135 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHE 135 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----C
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcch
Confidence 67899999999999 999999999999999999999999999999999999999999999999999999877433222
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
.. .+...+++..+++...... ..+++||++||+++.+|++++| ||+..++++.|+.++|
T Consensus 136 ~~---~~~~~~ll~~l~~~~~~~~----------------~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r 194 (297)
T 3b9p_A 136 AS---RRLKTEFLVEFDGLPGNPD----------------GDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTR 194 (297)
T ss_dssp CS---HHHHHHHHHHHHHCC----------------------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHH
T ss_pred HH---HHHHHHHHHHHhcccccCC----------------CCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHH
Confidence 22 3455677777777654211 1569999999999999999999 9999999999999999
Q ss_pred HHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc------------CCCcCHHHHHHHHHHHH
Q psy7780 239 RRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRER------------RMKVTNEDFKKSKESVL 304 (317)
Q Consensus 239 ~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~------------~~~it~~d~~~al~~v~ 304 (317)
..|++.++++.+.. .+.++..++..+.|++++||.++|++|++.|+++. ...|+.+||..|++++.
T Consensus 195 ~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 273 (297)
T 3b9p_A 195 ELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIR 273 (297)
T ss_dssp HHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcC
Confidence 99999998765432 34567889999999999999999999999998874 25799999999987653
No 27
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.97 E-value=7.1e-31 Score=250.21 Aligned_cols=201 Identities=33% Similarity=0.506 Sum_probs=160.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++||+||||||||+ ++|++++.+|+.++|+++...|.|+.+..++.+|..|+...|+||||||||.++..+....
T Consensus 150 ~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~-- 227 (389)
T 3vfd_A 150 GLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGE-- 227 (389)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC---------
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCcc--
Confidence 46899999999999 9999999999999999999999999999999999999999999999999999988764322
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
.....+++.+++..+++..... +.+|+||+|||+++.||++++| ||+..++++.|+.++|
T Consensus 228 -~~~~~~~~~~ll~~l~~~~~~~-----------------~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r 287 (389)
T 3vfd_A 228 -HDASRRLKTEFLIEFDGVQSAG-----------------DDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETR 287 (389)
T ss_dssp --CTHHHHHHHHHHHHHHHC----------------------CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHH
T ss_pred -chHHHHHHHHHHHHhhcccccC-----------------CCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHH
Confidence 2234566677888888765421 1679999999999999999999 9999999999999999
Q ss_pred HHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh------------cCCCcCHHHHHHHHHHHH
Q psy7780 239 RRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRE------------RRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 239 ~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~------------~~~~it~~d~~~al~~v~ 304 (317)
.+||+.++.+.... .+.++..++..+.|+++++|..+|+.|...++++ ....|+.+||..+++++.
T Consensus 288 ~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 366 (389)
T 3vfd_A 288 LLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIK 366 (389)
T ss_dssp HHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcC
Confidence 99999998775433 3446788999999999999999999999999887 245799999999988653
No 28
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.95 E-value=1.5e-28 Score=225.75 Aligned_cols=178 Identities=20% Similarity=0.207 Sum_probs=126.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHH----HhhCCceEeecccccccccccC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVA----EEHAPSIVFIDEIDAVGTKRYD 154 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a----~~~~P~Ii~iDEiD~l~~~r~~ 154 (317)
..||+||||||||+ ++|++++.+|++++++++.++|.|+++..++.+|..| +..+||||||||||.+++.+.+
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~ 117 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGG 117 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCC
Confidence 47899999999999 9999999999999999999999999999999999999 5778999999999999986532
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCC
Q psy7780 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 234 (317)
Q Consensus 155 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~ 234 (317)
... .......+...|++.+|+........ ........+++||+|||+++.||++++|||||++.|++ |+
T Consensus 118 ~~~-~~~~~~~v~~~Ll~~ld~~~~~~~~~--------~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~~--P~ 186 (293)
T 3t15_A 118 TTQ-YTVNNQMVNATLMNIADNPTNVQLPG--------MYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 186 (293)
T ss_dssp -------CHHHHHHHHHHHHHCCC-------------------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEEC--CC
T ss_pred Ccc-ccchHHHHHHHHHHHhcccccccccc--------ccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEeC--cC
Confidence 211 11112234455555555433110000 00000116799999999999999999999999988874 69
Q ss_pred HHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHH
Q psy7780 235 EKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKA 274 (317)
Q Consensus 235 ~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~ 274 (317)
.++|.+|++.++.. .+++...++..+.||++++|..
T Consensus 187 ~~~r~~Il~~~~~~----~~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 187 REDRIGVCTGIFRT----DNVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHHHHGG----GCCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHHHHhccC----CCCCHHHHHHHhCCCCcccHHH
Confidence 99999999988763 4577899999999999999864
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.95 E-value=5.2e-27 Score=242.17 Aligned_cols=201 Identities=38% Similarity=0.621 Sum_probs=178.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++||+||||||||+ ++|++++.+|+.++++++.+.+.|+.+..++.+|+.+....|+++||||+|.++.+++...
T Consensus 240 ~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~-- 317 (806)
T 1ypw_A 240 GILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH-- 317 (806)
T ss_dssp EEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCC--
T ss_pred eEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhcccccc--
Confidence 36899999999999 9999999999999999999999999999999999999999999999999999998874322
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
.....+++.+++..+++.... ..+++|+|||+++.+|++++|+|||+..+.++.|+.++|
T Consensus 318 -~~~~~~~~~~Ll~ll~g~~~~-------------------~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r 377 (806)
T 1ypw_A 318 -GEVERRIVSQLLTLMDGLKQR-------------------AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 377 (806)
T ss_dssp -SHHHHHHHHHHHHHHHSSCTT-------------------SCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHH
T ss_pred -chHHHHHHHHHHHHhhhhccc-------------------ccEEEecccCCchhcCHHHhcccccccccccCCCCHHHH
Confidence 223356667888888988765 789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC-----------------CCcCHHHHHHHHH
Q psy7780 239 RRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERR-----------------MKVTNEDFKKSKE 301 (317)
Q Consensus 239 ~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~-----------------~~it~~d~~~al~ 301 (317)
.+|++.+.+++.+..+.++..++..+.||+++|+..+|++|++.++++.. ..++.+|+..++.
T Consensus 378 ~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~ 457 (806)
T 1ypw_A 378 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALS 457 (806)
T ss_dssp HHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHH
T ss_pred HHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhcccc
Confidence 99999999998888888999999999999999999999999998887542 3467788888877
Q ss_pred HHH
Q psy7780 302 SVL 304 (317)
Q Consensus 302 ~v~ 304 (317)
...
T Consensus 458 ~~~ 460 (806)
T 1ypw_A 458 QSN 460 (806)
T ss_dssp HSC
T ss_pred ccC
Confidence 654
No 30
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.89 E-value=1.3e-26 Score=225.34 Aligned_cols=168 Identities=18% Similarity=0.223 Sum_probs=114.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCC--ceEEEEechhhhhhhcCCchHHHHHHHHHH---HhhCCceEeeccccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS--ATFLRVVGSELIQKYLGDGPKLVRELFRVA---EEHAPSIVFIDEIDAVGTKRY 153 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~--~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a---~~~~P~Ii~iDEiD~l~~~r~ 153 (317)
++||+||||||||+ ++|++++ .+|+.++++++.++|.|+++. ++++|..| +...||||||||+|+++++|+
T Consensus 65 ~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~ 143 (456)
T 2c9o_A 65 AVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCET 143 (456)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--
T ss_pred eEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccC
Confidence 58999999999999 9999999 999999999999999999997 99999999 888899999999999999885
Q ss_pred CCCCCchhHH-H---------------HHHHHHHHHhc--CCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCC
Q psy7780 154 DSNSGGEREI-Q---------------RTMLELLNQLD--GFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215 (317)
Q Consensus 154 ~~~~~~~~~~-~---------------~~l~~ll~~ld--~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld 215 (317)
....++..+. . +...+++..++ +.... +.++|++|||+++.+|
T Consensus 144 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~-------------------~~v~i~attn~~~~ld 204 (456)
T 2c9o_A 144 ENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAG-------------------DVIYIEANSGAVKRQG 204 (456)
T ss_dssp ------------CEEEEEEETTEEEEEEECHHHHHHHHHTTCCTT-------------------EEEEEETTTCCEEEEE
T ss_pred CCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccCCCC-------------------CEEEEEcCCCCcccCC
Confidence 5432221111 1 11123555554 22211 3466669999999999
Q ss_pred ccccCCCccee--EEEeCCCC--HHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHH
Q psy7780 216 PALIRPGRIDR--KIEFPLPD--EKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTE 278 (317)
Q Consensus 216 ~al~rpgRf~~--~I~~~~P~--~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~ 278 (317)
++++||||||+ .+++|.|+ .++|.+|++.+.. .+++.++..+.| |+|+.++|..
T Consensus 205 ~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--gadl~~l~~~ 262 (456)
T 2c9o_A 205 RCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--GQDILSMMGQ 262 (456)
T ss_dssp EETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC-----------------
T ss_pred hhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--hhHHHHHHhh
Confidence 99999999998 66777774 5788888876552 258888999999 9999999964
No 31
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.83 E-value=9.9e-21 Score=177.81 Aligned_cols=185 Identities=20% Similarity=0.238 Sum_probs=136.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc--eEEEEechhhhhhh---------------------------------------
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA--TFLRVVGSELIQKY--------------------------------------- 117 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~--~~~~v~~s~l~~~~--------------------------------------- 117 (317)
++||+||||||||+ ++|++++. +|+.+++..+...+
T Consensus 72 ~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~ 151 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRT 151 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhccc
Confidence 57999999999999 88888875 89999887644332
Q ss_pred ----------cCCchHHHHHHHHHHHhh---------CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCC
Q psy7780 118 ----------LGDGPKLVRELFRVAEEH---------APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFD 178 (317)
Q Consensus 118 ----------~g~~~~~l~~~f~~a~~~---------~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~ 178 (317)
.|+....++..|..+... .|+||||||+|.+.. + .+..++..++...
T Consensus 152 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~-----------~---~~~~L~~~le~~~ 217 (368)
T 3uk6_A 152 QGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDI-----------E---SFSFLNRALESDM 217 (368)
T ss_dssp --CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBH-----------H---HHHHHHHHTTCTT
T ss_pred ccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccCh-----------H---HHHHHHHHhhCcC
Confidence 233345666666665432 278999999998842 1 2233444443321
Q ss_pred cccccccchhhhcccccccCCCCeEEEEEc-----------CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhc
Q psy7780 179 SRVQNRRLSEVYSSLTLIYLPGDVKVIMAT-----------NRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTS 247 (317)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~v~vI~tT-----------N~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~ 247 (317)
.+++++++. |.++.+++++++ ||.. +.|++|+.+++.+|++..+.
T Consensus 218 ---------------------~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~ 273 (368)
T 3uk6_A 218 ---------------------APVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCE 273 (368)
T ss_dssp ---------------------CCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHH
T ss_pred ---------------------CCeeeeecccceeeeeccCCCCcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHH
Confidence 344444443 358889999999 9975 89999999999999998876
Q ss_pred CCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Q psy7780 248 RMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 248 ~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~ 304 (317)
..+.. ++..+..+++.+.+.+++++.++|+.|...|..++...|+.+|+.++++.+.
T Consensus 274 ~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 274 EEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFL 331 (368)
T ss_dssp HTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSB
T ss_pred HcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Confidence 54332 2334677888887569999999999999999999999999999999998744
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.83 E-value=4.7e-21 Score=175.80 Aligned_cols=186 Identities=17% Similarity=0.186 Sum_probs=136.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCC-------ceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeeccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS-------ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~-------~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~ 151 (317)
++||+||||||||+ ++|++++ .+++.++++++.+.+.|.....++.+|..+ .++||||||+|.++..
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~ 145 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRP 145 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccC
Confidence 68999999999999 7777773 389999999999999999999999999877 4689999999999876
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccCCCccee
Q psy7780 152 RYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIRPGRIDR 226 (317)
Q Consensus 152 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~rpgRf~~ 226 (317)
+++ .....+... .|+..++... .++.+|++||..+ .++|+|++ ||+.
T Consensus 146 ~~~--~~~~~~~~~---~Ll~~l~~~~---------------------~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~ 197 (309)
T 3syl_A 146 DNE--RDYGQEAIE---ILLQVMENNR---------------------DDLVVILAGYADRMENFFQSNPGFRS--RIAH 197 (309)
T ss_dssp C-----CCTHHHHH---HHHHHHHHCT---------------------TTCEEEEEECHHHHHHHHHHSTTHHH--HEEE
T ss_pred CCc--ccccHHHHH---HHHHHHhcCC---------------------CCEEEEEeCChHHHHHHHhhCHHHHH--hCCe
Confidence 532 122333444 4444444321 5688999998754 36899999 9999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHh-------CCCCCHHHHHHHHHHHHHHHHHh----cCCCcCHH
Q psy7780 227 KIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMA-------KDDLSGADIKAICTEAGLMALRE----RRMKVTNE 294 (317)
Q Consensus 227 ~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~-------t~g~s~~dl~~l~~~A~~~a~~~----~~~~it~~ 294 (317)
.++|++|+.+++.+|++.++.+.+.. ++..+..++.. ...-+++++.++++.|...+..+ ....++.+
T Consensus 198 ~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~ 277 (309)
T 3syl_A 198 HIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLFTASSGPLDAR 277 (309)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHHC---CEEHH
T ss_pred EEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCHH
Confidence 99999999999999999998765543 22224444443 22235899999999998766544 33556666
Q ss_pred HHHH
Q psy7780 295 DFKK 298 (317)
Q Consensus 295 d~~~ 298 (317)
|+..
T Consensus 278 ~l~~ 281 (309)
T 3syl_A 278 ALST 281 (309)
T ss_dssp HHHE
T ss_pred HHhh
Confidence 6543
No 33
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.81 E-value=1.5e-19 Score=168.03 Aligned_cols=194 Identities=14% Similarity=0.125 Sum_probs=138.8
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
++||+||||||||+ ++|++++.+|+.++++.+. ....+..++.. ...+++|||||+|.+..
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~------~~~~~~~~~~~--~~~~~vl~lDEi~~l~~-------- 120 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE------KSGDLAAILTN--LSEGDILFIDEIHRLSP-------- 120 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC------SHHHHHHHHHT--CCTTCEEEEETGGGCCH--------
T ss_pred eEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc------chhHHHHHHHh--ccCCCEEEEechhhcCH--------
Confidence 57899999999999 9999999999999997652 33444454443 24578999999998842
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHH
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTK 238 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r 238 (317)
..+..+...++. .....-... ........... .++.+|++||+...++++|++ ||+..+++++|+.+++
T Consensus 121 ---~~~~~Ll~~l~~---~~~~~~~~~--~~~~~~~~~~~-~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~ 189 (338)
T 3pfi_A 121 ---AIEEVLYPAMED---YRLDIIIGS--GPAAQTIKIDL-PKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSEL 189 (338)
T ss_dssp ---HHHHHHHHHHHT---SCC-----------CCCCCCCC-CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHH
T ss_pred ---HHHHHHHHHHHh---ccchhhccc--CccccceecCC-CCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHH
Confidence 234444444433 211000000 00000000111 258999999999999999999 9999999999999999
Q ss_pred HHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q psy7780 239 RRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESV 303 (317)
Q Consensus 239 ~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v 303 (317)
..+++.++...+.. ++..+..++..+.| +++++.++++.+...|...+...|+.+++..++...
T Consensus 190 ~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~ 254 (338)
T 3pfi_A 190 ALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRDFADVNDEEIITEKRANEALNSL 254 (338)
T ss_dssp HHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHh
Confidence 99999988765543 23345667776555 789999999999888877778889999999888763
No 34
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.78 E-value=2.9e-20 Score=184.21 Aligned_cols=203 Identities=19% Similarity=0.248 Sum_probs=129.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhh---------hhcCCchHHHHHHHHHHHhhCCceEeeccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ---------KYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~---------~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
+.+|+||||||||+ ++|..++.++..++++.+.. .|+|.....+...|..|....| |+||||+|.+.
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~ 188 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMS 188 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTCSSSE-EEEEEESSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhh
Confidence 67899999999999 99999999999999877544 6788888889999998877776 99999999998
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEE
Q psy7780 150 TKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIE 229 (317)
Q Consensus 150 ~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~ 229 (317)
..+.+ .....++..+|.......... .........++++|+|||+++.||++|++ ||+ .|+
T Consensus 189 ~~~~~----------~~~~~LL~~ld~~~~~~~~~~------~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~ 249 (543)
T 3m6a_A 189 SDFRG----------DPSSAMLEVLDPEQNSSFSDH------YIEETFDLSKVLFIATANNLATIPGPLRD--RME-IIN 249 (543)
T ss_dssp -------------------CCGGGTCTTTTTBCCCS------SSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEE
T ss_pred hhhcc----------CHHHHHHHHHhhhhcceeecc------cCCeeecccceEEEeccCccccCCHHHHh--hcc-eee
Confidence 76421 123345666665432210000 00000001578999999999999999999 996 799
Q ss_pred eCCCCHHHHHHHHHHHhcC-----CCCC------cCCCHHHHHHhCC-CCCHHHHH----HHHHHHHHHHHHh--cCCCc
Q psy7780 230 FPLPDEKTKRRIFNIHTSR-----MTLA------EDVNLQELIMAKD-DLSGADIK----AICTEAGLMALRE--RRMKV 291 (317)
Q Consensus 230 ~~~P~~~~r~~Il~~~l~~-----~~~~------~~~~~~~ia~~t~-g~s~~dl~----~l~~~A~~~a~~~--~~~~i 291 (317)
|+.|+.+++.+|++.++.+ ..+. ++..+..++.... ....++|+ ++|+.|+..+++. ....|
T Consensus 250 ~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~I 329 (543)
T 3m6a_A 250 IAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVAEERKRITV 329 (543)
T ss_dssp CCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEE
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHhcCCcceec
Confidence 9999999999999998621 2221 1222444454333 23445555 5555555555544 34579
Q ss_pred CHHHHHHHHHHHH
Q psy7780 292 TNEDFKKSKESVL 304 (317)
Q Consensus 292 t~~d~~~al~~v~ 304 (317)
+.+|+.+++....
T Consensus 330 t~~~l~~~Lg~~~ 342 (543)
T 3m6a_A 330 TEKNLQDFIGKRI 342 (543)
T ss_dssp CTTTTHHHHCSCC
T ss_pred CHHHHHHHhCCcc
Confidence 9999988876543
No 35
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.77 E-value=1.6e-19 Score=163.20 Aligned_cols=185 Identities=14% Similarity=0.139 Sum_probs=128.8
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCc----hHHHHHHHHHHHhhCCceEeecccccccccccC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDG----PKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYD 154 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~----~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~ 154 (317)
++||+||||||||+ ++|++++.+|+.+++++ .+.|.. ...++.+|+.+....+++|||||+|.+++.+..
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~ 142 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPI 142 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG---GCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH---HhcCCchHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCC
Confidence 67999999999999 99999999999999876 334443 357889999998888999999999999876532
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCc-cccCCCcceeEEEeCCC
Q psy7780 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDP-ALIRPGRIDRKIEFPLP 233 (317)
Q Consensus 155 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~-al~rpgRf~~~I~~~~P 233 (317)
. ...... .+..+...+++.... +.++++|+|||+++.+++ .+++ ||...|++|++
T Consensus 143 ~-~~~~~~---~l~~L~~~~~~~~~~------------------~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l 198 (272)
T 1d2n_A 143 G-PRFSNL---VLQALLVLLKKAPPQ------------------GRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPNI 198 (272)
T ss_dssp T-TBCCHH---HHHHHHHHTTCCCST------------------TCEEEEEEEESCHHHHHHTTCTT--TSSEEEECCCE
T ss_pred C-hhHHHH---HHHHHHHHhcCccCC------------------CCCEEEEEecCChhhcchhhhhc--ccceEEcCCCc
Confidence 1 122222 333444445544322 156889999999999998 6666 99999999877
Q ss_pred CH-HHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCC----CHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHH
Q psy7780 234 DE-KTKRRIFNIHTSRMTLAEDVNLQELIMAKDDL----SGADIKAICTEAGLMALRERRMKVTNEDFKKSKES 302 (317)
Q Consensus 234 ~~-~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~----s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~ 302 (317)
+. ++...++... ..+ .+.++..+++.+.|+ +.+++.++++.|...+ .....++|.++++.
T Consensus 199 ~~r~~i~~i~~~~---~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~-----~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 199 ATGEQLLEALELL---GNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD-----PEYRVRKFLALLRE 263 (272)
T ss_dssp EEHHHHHHHHHHH---TCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC-----GGGHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhc---CCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc-----hHHHHHHHHHHHHH
Confidence 65 5555555432 222 344578888888887 5777777777654322 23445555555543
No 36
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.77 E-value=6.9e-19 Score=160.83 Aligned_cols=208 Identities=18% Similarity=0.257 Sum_probs=140.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhh-hhcCCc-hHHHHHHHHHH-----HhhCCceEeeccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ-KYLGDG-PKLVRELFRVA-----EEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~-~~~g~~-~~~l~~~f~~a-----~~~~P~Ii~iDEiD~l~~~ 151 (317)
++||+||||||||+ ++|+.++.+++.++++++.. .|+|.. ...++.+|..+ ....++||||||+|.+...
T Consensus 52 ~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~ 131 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKK 131 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcc
Confidence 68999999999999 99999999999999999876 565543 45677777643 1233689999999999876
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEE----cCCCCCCCccccCCCcceeE
Q psy7780 152 RYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMA----TNRIETLDPALIRPGRIDRK 227 (317)
Q Consensus 152 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~t----TN~~~~Ld~al~rpgRf~~~ 227 (317)
.... +.+.....+...|+..+++..-.... . .....++++|++ ++.++.+++++++ ||+..
T Consensus 132 ~~~~--~~~~~~~~~~~~Ll~~le~~~~~~~~---------~--~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~ 196 (310)
T 1ofh_A 132 GEYS--GADVSREGVQRDLLPLVEGSTVSTKH---------G--MVKTDHILFIASGAFQVARPSDLIPELQG--RLPIR 196 (310)
T ss_dssp SSCC--SSHHHHHHHHHHHHHHHHCCEEEETT---------E--EEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEE
T ss_pred cccc--ccchhHHHHHHHHHHHhcCCeEeccc---------c--cccCCcEEEEEcCCcccCCcccCCHHHHh--hCCce
Confidence 5321 22222222344555555543210000 0 001256888888 5678899999999 99989
Q ss_pred EEeCCCCHHHHHHHHHHHh-------------cCCCCC-cCCCHHHHHHhC-------CCCCHHHHHHHHHHHHHHHHHh
Q psy7780 228 IEFPLPDEKTKRRIFNIHT-------------SRMTLA-EDVNLQELIMAK-------DDLSGADIKAICTEAGLMALRE 286 (317)
Q Consensus 228 I~~~~P~~~~r~~Il~~~l-------------~~~~~~-~~~~~~~ia~~t-------~g~s~~dl~~l~~~A~~~a~~~ 286 (317)
++|++|+.+++.+|++... ....+. ++..++.+++.+ .+.+.+.+.++++.+...+..+
T Consensus 197 i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~ 276 (310)
T 1ofh_A 197 VELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFS 276 (310)
T ss_dssp EECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHH
T ss_pred EEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcC
Confidence 9999999999999998421 111111 223355566654 2568999999999877544322
Q ss_pred c-----C-CCcCHHHHHHHHHHHH
Q psy7780 287 R-----R-MKVTNEDFKKSKESVL 304 (317)
Q Consensus 287 ~-----~-~~it~~d~~~al~~v~ 304 (317)
. . ..|+.+|+.+++....
T Consensus 277 ~~~~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 277 ASDMNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp GGGCTTCEEEECHHHHHHHTCSSS
T ss_pred CccccCCEEEEeeHHHHHHHHhhh
Confidence 2 1 1499999999887643
No 37
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.75 E-value=1.3e-18 Score=163.82 Aligned_cols=218 Identities=17% Similarity=0.199 Sum_probs=140.8
Q ss_pred hhHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh-hcCCc-hHHHHHHHHHH----HhhCCceEeeccccccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK-YLGDG-PKLVRELFRVA----EEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~-~~g~~-~~~l~~~f~~a----~~~~P~Ii~iDEiD~l~~~ 151 (317)
.++||+||||||||+ ++|+.++.+|+.++|+++... |+|.. ...++.+|..+ ....|+||||||+|.+...
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~ 131 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRK 131 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccc
Confidence 378999999999999 999999999999999998754 77776 66788888876 4556799999999999988
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC----------CC--------
Q psy7780 152 RYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI----------ET-------- 213 (317)
Q Consensus 152 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~----------~~-------- 213 (317)
+.+...+.......+...||..|++........................++++|+++|.. ..
T Consensus 132 ~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~ 211 (363)
T 3hws_A 132 SDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGA 211 (363)
T ss_dssp SSCC---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------
T ss_pred ccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccc
Confidence 755443333333345666777777532110000000000000111122456666666642 11
Q ss_pred ---------------------------CCccccCCCcceeEEEeCCCCHHHHHHHHHH----Hhc-------CCCCC---
Q psy7780 214 ---------------------------LDPALIRPGRIDRKIEFPLPDEKTKRRIFNI----HTS-------RMTLA--- 252 (317)
Q Consensus 214 ---------------------------Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~----~l~-------~~~~~--- 252 (317)
+.|+|++ ||+..+.|++|+.+.+.+|++. ++. .....
T Consensus 212 ~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~ 289 (363)
T 3hws_A 212 TVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEF 289 (363)
T ss_dssp ------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEE
T ss_pred cccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEE
Confidence 6888888 9999999999999999999986 221 11111
Q ss_pred cCCCHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHhcCC-------CcCHHHHHHHH
Q psy7780 253 EDVNLQELIM--AKDDLSGADIKAICTEAGLMALRERRM-------KVTNEDFKKSK 300 (317)
Q Consensus 253 ~~~~~~~ia~--~t~g~s~~dl~~l~~~A~~~a~~~~~~-------~it~~d~~~al 300 (317)
++..++.++. ....+..++|+++++++...++.+-.. .|+.+++++.+
T Consensus 290 ~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~~~~~~~I~~~~v~~~~ 346 (363)
T 3hws_A 290 RDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQS 346 (363)
T ss_dssp CHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTCCCSEEEECHHHHTTCCS
T ss_pred CHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcccccCCceeEEcHHHHhCcC
Confidence 2222455554 334566799999999998888765421 46666665544
No 38
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.75 E-value=2.6e-18 Score=158.39 Aligned_cols=193 Identities=12% Similarity=0.077 Sum_probs=136.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+++|+||||||||+ ++|++++.+|+.++++.+.. ...+...|..+ ...+++|||||+|.+...
T Consensus 40 ~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~------- 105 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------PGDLAAILANS-LEEGDILFIDEIHRLSRQ------- 105 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS------HHHHHHHHTTT-CCTTCEEEETTTTSCCHH-------
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC------hHHHHHHHHHh-ccCCCEEEEECCcccccc-------
Confidence 68999999999999 99999999999999876522 23333333321 145789999999987532
Q ss_pred chhHHHHHHHHHHHHhcC--CCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHH
Q psy7780 159 GEREIQRTMLELLNQLDG--FDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 236 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~--~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~ 236 (317)
.+..+..+++...- +.+..... ........++.+|++||+++.+++++++ ||+..+.+++|+.+
T Consensus 106 ----~~~~L~~~l~~~~~~~v~~~~~~~--------~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~ 171 (324)
T 1hqc_A 106 ----AEEHLYPAMEDFVMDIVIGQGPAA--------RTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPE 171 (324)
T ss_dssp ----HHHHHHHHHHHSEEEECCSSSSSC--------CCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHH
T ss_pred ----hHHHHHHHHHhhhhHHhccccccc--------cccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHH
Confidence 24445555544210 00000000 0000001368899999999999999999 99889999999999
Q ss_pred HHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q psy7780 237 TKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESV 303 (317)
Q Consensus 237 ~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v 303 (317)
++..+++.++.+.+.. ++..+..++..+.| +++++.++++.+...|...+...|+.+++..++...
T Consensus 172 e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 172 ELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp HHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 9999999998765443 23346778888766 689999999988777766667789999998887654
No 39
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.74 E-value=1.1e-17 Score=157.16 Aligned_cols=193 Identities=17% Similarity=0.181 Sum_probs=141.6
Q ss_pred hhHHHhhhcCCCchh---hhhhcC---------CceEEEEechhhhh------h----------hcCCchH-HHHHHHHH
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT---------SATFLRVVGSELIQ------K----------YLGDGPK-LVRELFRV 131 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~---------~~~~~~v~~s~l~~------~----------~~g~~~~-~l~~~f~~ 131 (317)
++.+++||||||||+ ++++++ +..++.++|....+ . ..|.+.. .+..+++.
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~ 124 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKR 124 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHH
Confidence 367899999999999 788877 88999999875321 1 1122232 34555555
Q ss_pred HHhh-CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 132 AEEH-APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 132 a~~~-~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
+... .|++|+|||+|.+...+ ..+..+..++..++..... .++.+|++||.
T Consensus 125 l~~~~~~~vlilDEi~~l~~~~---------~~~~~l~~l~~~~~~~~~~-------------------~~~~~I~~t~~ 176 (387)
T 2v1u_A 125 LSRLRGIYIIVLDEIDFLPKRP---------GGQDLLYRITRINQELGDR-------------------VWVSLVGITNS 176 (387)
T ss_dssp HTTSCSEEEEEEETTTHHHHST---------THHHHHHHHHHGGGCC------------------------CEEEEECSC
T ss_pred HhccCCeEEEEEccHhhhcccC---------CCChHHHhHhhchhhcCCC-------------------ceEEEEEEECC
Confidence 5443 37899999999996542 1245677777766544211 57889999998
Q ss_pred C---CCCCccccCCCccee-EEEeCCCCHHHHHHHHHHHhcC----CCCCcCCCHHHHHHhCC---CCCHHHHHHHHHHH
Q psy7780 211 I---ETLDPALIRPGRIDR-KIEFPLPDEKTKRRIFNIHTSR----MTLAEDVNLQELIMAKD---DLSGADIKAICTEA 279 (317)
Q Consensus 211 ~---~~Ld~al~rpgRf~~-~I~~~~P~~~~r~~Il~~~l~~----~~~~~~~~~~~ia~~t~---g~s~~dl~~l~~~A 279 (317)
+ +.+++++++ ||.. .++|++|+.+++.+|++.++.. ..+ ++..+..+++.+. | .++.+.++|+.|
T Consensus 177 ~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~G-~~r~~~~~l~~a 252 (387)
T 2v1u_A 177 LGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVL-DPDVVPLCAALAAREHG-DARRALDLLRVA 252 (387)
T ss_dssp STTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTB-CSSHHHHHHHHHHSSSC-CHHHHHHHHHHH
T ss_pred CchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCC-CHHHHHHHHHHHHHhcc-CHHHHHHHHHHH
Confidence 8 779999999 9964 8999999999999999988753 222 2334566777665 5 688899999999
Q ss_pred HHHHHHhcCCCcCHHHHHHHHHHHHh
Q psy7780 280 GLMALRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 280 ~~~a~~~~~~~it~~d~~~al~~v~~ 305 (317)
...|..++...|+.+|+.+++..+..
T Consensus 253 ~~~a~~~~~~~i~~~~v~~a~~~~~~ 278 (387)
T 2v1u_A 253 GEIAERRREERVRREHVYSARAEIER 278 (387)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHhh
Confidence 98888888889999999999988753
No 40
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.73 E-value=2.8e-19 Score=171.86 Aligned_cols=132 Identities=17% Similarity=0.177 Sum_probs=55.6
Q ss_pred hhHHHhhhcCCCchh---hhhhcCCceEEEEechhhhh-hhcCC-chHHHHHHHHHHHhhCCceEeecccccccccccCC
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ-KYLGD-GPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~-~~~g~-~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~ 155 (317)
+++||+||||||||+ ++|.+++.+|+.++++.+.+ +|+|+ .+..++.+|+.|... +++||+|.+....
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~----~~~De~d~~~~~~--- 123 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKL----VRQQEIAKNRARA--- 123 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHH----HHHHHHHSCC------
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhc----chhhhhhhhhccc---
Confidence 368999999999999 99999999999999999988 59995 799999999999875 4589998875432
Q ss_pred CCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEE-cCCCCCCCccccCCCcceeEEEeCCCC
Q psy7780 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMA-TNRIETLDPALIRPGRIDRKIEFPLPD 234 (317)
Q Consensus 156 ~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~t-TN~~~~Ld~al~rpgRf~~~I~~~~P~ 234 (317)
.. ....+++.+|+.+||++.+. ..+ +++ ||+++.||+||+||||||+.|+++.|+
T Consensus 124 ~~---~~e~rvl~~LL~~~dg~~~~-------------------~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~ 179 (444)
T 1g41_A 124 ED---VAEERILDALLPPAKNQWGE-------------------VEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSA 179 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hh---hHHHHHHHHHHHHhhccccc-------------------ccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCC
Confidence 11 12357888999999999765 343 455 999999999999999999999999999
Q ss_pred HH-HHHHHHH
Q psy7780 235 EK-TKRRIFN 243 (317)
Q Consensus 235 ~~-~r~~Il~ 243 (317)
.. .|.+|+.
T Consensus 180 ~~~~~~ei~~ 189 (444)
T 1g41_A 180 GVSMGVEIMA 189 (444)
T ss_dssp ----------
T ss_pred Cccchhhhhc
Confidence 87 7888763
No 41
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.73 E-value=4.3e-18 Score=164.73 Aligned_cols=174 Identities=18% Similarity=0.196 Sum_probs=128.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHh----hCCceEeecccccccccccC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE----HAPSIVFIDEIDAVGTKRYD 154 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~----~~P~Ii~iDEiD~l~~~r~~ 154 (317)
++||+||||||||+ ++|+.++.+|+.+++.. .+...++.+|..+.. ..++||||||+|.+....
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~-------~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~-- 122 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIARYANADVERISAVT-------SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ-- 122 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT-------CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc-------CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH--
Confidence 47899999999999 99999999999998753 345677888887764 357899999999985432
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEc--CCCCCCCccccCCCcceeEEEeCC
Q psy7780 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMAT--NRIETLDPALIRPGRIDRKIEFPL 232 (317)
Q Consensus 155 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tT--N~~~~Ld~al~rpgRf~~~I~~~~ 232 (317)
+..|...++. +.+.+|++| |....++++|++ ||. ++.|++
T Consensus 123 ---------q~~LL~~le~--------------------------~~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~ 164 (447)
T 3pvs_A 123 ---------QDAFLPHIED--------------------------GTITFIGATTENPSFELNSALLS--RAR-VYLLKS 164 (447)
T ss_dssp -----------CCHHHHHT--------------------------TSCEEEEEESSCGGGSSCHHHHT--TEE-EEECCC
T ss_pred ---------HHHHHHHHhc--------------------------CceEEEecCCCCcccccCHHHhC--cee-EEeeCC
Confidence 2233334432 456677766 555689999999 997 788999
Q ss_pred CCHHHHHHHHHHHhcCCC-------CC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh--cCCCcCHHHHHHHHHH
Q psy7780 233 PDEKTKRRIFNIHTSRMT-------LA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRE--RRMKVTNEDFKKSKES 302 (317)
Q Consensus 233 P~~~~r~~Il~~~l~~~~-------~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~--~~~~it~~d~~~al~~ 302 (317)
|+.+++..+++..+.+.. .. ++..++.++..+.| +.+++.++++.|...+... +...|+.+++.+++.+
T Consensus 165 l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 165 LSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 999999999999987521 11 22235667777665 7888999999887776422 4467999999888764
Q ss_pred H
Q psy7780 303 V 303 (317)
Q Consensus 303 v 303 (317)
.
T Consensus 244 ~ 244 (447)
T 3pvs_A 244 R 244 (447)
T ss_dssp C
T ss_pred h
Confidence 3
No 42
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.72 E-value=5.4e-18 Score=157.26 Aligned_cols=196 Identities=19% Similarity=0.189 Sum_probs=134.4
Q ss_pred hhHHHhhhcCCCchh---hhhhcCCceEEEEech------hhhhhhcCC-chHHHHHHHHHHHhhC---CceEeeccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTSATFLRVVGS------ELIQKYLGD-GPKLVRELFRVAEEHA---PSIVFIDEIDA 147 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s------~l~~~~~g~-~~~~l~~~f~~a~~~~---P~Ii~iDEiD~ 147 (317)
++.||+||||||||+ ++|+.++.+++.++++ ++.....-. .... |. .... .+|+||||+|.
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~~~~~~----~~--~~~g~l~~~vl~iDEi~~ 120 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYNQHKGN----FE--VKKGPVFSNFILADEVNR 120 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEETTTTE----EE--EEECTTCSSEEEEETGGG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeecCCCCc----eE--eccCcccccEEEEEcccc
Confidence 488999999999999 9999999999999874 232211100 0000 00 0111 37999999998
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccCCC
Q psy7780 148 VGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIRPG 222 (317)
Q Consensus 148 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~rpg 222 (317)
+.+ ..+..+.+.+++-. - .........+.++++|+|+|..+ .+++++++
T Consensus 121 ~~~-----------~~~~~Ll~~l~~~~---~----------~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~-- 174 (331)
T 2r44_A 121 SPA-----------KVQSALLECMQEKQ---V----------TIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD-- 174 (331)
T ss_dssp SCH-----------HHHHHHHHHHHHSE---E----------EETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--
T ss_pred CCH-----------HHHHHHHHHHhcCc---e----------eeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--
Confidence 632 23455555555411 0 01122233456788999998654 38999999
Q ss_pred cceeEEEeCCCCHHHHHHHHHHHhcCCCCC-----------------------cCCCHHHHHHh----------------
Q psy7780 223 RIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-----------------------EDVNLQELIMA---------------- 263 (317)
Q Consensus 223 Rf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-----------------------~~~~~~~ia~~---------------- 263 (317)
||+..+.++.|+.+++.+|++.+....... ++..++.++..
T Consensus 175 Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~ 254 (331)
T 2r44_A 175 RFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEA 254 (331)
T ss_dssp TSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHH
T ss_pred heeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccccc
Confidence 999899999999999999999987643211 01112223221
Q ss_pred ---CCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhc
Q psy7780 264 ---KDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKK 308 (317)
Q Consensus 264 ---t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~ 308 (317)
..|.|++.+.++++.|...|..+++..|+.+|+.+++..++.++-
T Consensus 255 ~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r~ 302 (331)
T 2r44_A 255 SYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHRI 302 (331)
T ss_dssp HHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTTS
T ss_pred cccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhhc
Confidence 125699999999999999998899999999999999999986653
No 43
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.72 E-value=6.3e-18 Score=163.34 Aligned_cols=188 Identities=14% Similarity=0.167 Sum_probs=135.1
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeeccccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRY 153 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~ 153 (317)
+.+|+||||||||+ ++|+++ +.+++++++.++...+.+.........|.......|+||||||++.+..++
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~- 210 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT- 210 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH-
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh-
Confidence 57899999999999 888887 889999999988665543322222223443333368999999999986532
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC---CCccccCCCcce--eEE
Q psy7780 154 DSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET---LDPALIRPGRID--RKI 228 (317)
Q Consensus 154 ~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~---Ld~al~rpgRf~--~~I 228 (317)
..+..+..+++.+-. . +..+||++.+.+.. +++++++ ||. ..+
T Consensus 211 --------~~q~~l~~~l~~l~~---~-------------------~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i 258 (440)
T 2z4s_A 211 --------GVQTELFHTFNELHD---S-------------------GKQIVICSDREPQKLSEFQDRLVS--RFQMGLVA 258 (440)
T ss_dssp --------HHHHHHHHHHHHHHT---T-------------------TCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCC
T ss_pred --------HHHHHHHHHHHHHHH---C-------------------CCeEEEEECCCHHHHHHHHHHHHh--hccCCeEE
Confidence 123334344433221 1 44555555555554 8899999 996 789
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Q psy7780 229 EFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 229 ~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~ 304 (317)
.+++|+.++|.+|++..+...++. ++..+..++..+.| +.+++.++++.+...|...++ .|+.+++.++++...
T Consensus 259 ~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 259 KLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLKDFI 333 (440)
T ss_dssp BCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTSTTT
T ss_pred EeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHh
Confidence 999999999999999987643332 23347778888876 899999999999888876654 699999999988765
No 44
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.72 E-value=3e-17 Score=152.76 Aligned_cols=147 Identities=16% Similarity=0.196 Sum_probs=101.3
Q ss_pred CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcC-CCcccccccchhhhcccccccCCCCeEEEEEcCCCC-CC
Q psy7780 137 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDG-FDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-TL 214 (317)
Q Consensus 137 P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~-~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-~L 214 (317)
+++|||||+|.+... .+..|..+++.-.. +.. .......+.++.+|+|||..+ .+
T Consensus 145 ~~vl~iDEi~~l~~~-----------~~~~Ll~~le~~~~~~~~------------~g~~~~~~~~~~li~~~n~~~~~l 201 (350)
T 1g8p_A 145 RGYLYIDECNLLEDH-----------IVDLLLDVAQSGENVVER------------DGLSIRHPARFVLVGSGNPEEGDL 201 (350)
T ss_dssp TEEEEETTGGGSCHH-----------HHHHHHHHHHHSEEEECC------------TTCCEEEECCEEEEEEECSCSCCC
T ss_pred CCEEEEeChhhCCHH-----------HHHHHHHHHhcCceEEEe------------cceEEeeCCceEEEEEeCCCCCCC
Confidence 689999999988432 34455555554100 110 011112225799999999855 89
Q ss_pred CccccCCCcceeEEEeCCC-CHHHHHHHHHHHhc-------------------------------CCCCCcCCCHHHHHH
Q psy7780 215 DPALIRPGRIDRKIEFPLP-DEKTKRRIFNIHTS-------------------------------RMTLAEDVNLQELIM 262 (317)
Q Consensus 215 d~al~rpgRf~~~I~~~~P-~~~~r~~Il~~~l~-------------------------------~~~~~~~~~~~~ia~ 262 (317)
+++|++ ||+..+++++| +.+.+.+|++..+. ...++ +..+..++.
T Consensus 202 ~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls-~~~~~~l~~ 278 (350)
T 1g8p_A 202 RPQLLD--RFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAP-NTALYDCAA 278 (350)
T ss_dssp CHHHHT--TCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCC-HHHHHHHHH
T ss_pred CHHHHh--hcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCC-HHHHHHHHH
Confidence 999999 99988999999 68888888866321 11222 112334444
Q ss_pred hCC--C-CCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhcc
Q psy7780 263 AKD--D-LSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKE 309 (317)
Q Consensus 263 ~t~--g-~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~~ 309 (317)
... + -+.+.+.++++.|...|..+++..|+.+|+.+++..++.++-.
T Consensus 279 ~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r~~ 328 (350)
T 1g8p_A 279 LCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRLR 328 (350)
T ss_dssp HHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGCC
T ss_pred HHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhccc
Confidence 332 2 2679999999999999988888899999999999999877754
No 45
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.70 E-value=6.4e-18 Score=173.51 Aligned_cols=191 Identities=25% Similarity=0.298 Sum_probs=140.3
Q ss_pred hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhh--hhhcCCchHHHHHHHHHHHhhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELI--QKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~--~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
+.||+|+||||||+ ++|+.+ +..++.++++.+. .++.|+.+..++.+|+.+....++||||||+|
T Consensus 209 ~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~ 288 (758)
T 1r6b_X 209 NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIH 288 (758)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTT
T ss_pred CeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechH
Confidence 67899999999999 777765 7789999988877 46889999999999999988888999999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccCC
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIRP 221 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~rp 221 (317)
.+.+.+.. ..+..+..+.+ ..+-.. +.+.+|++||.++ .+|++|.|
T Consensus 289 ~l~~~~~~--~~~~~~~~~~L-------~~~l~~-------------------~~~~~I~at~~~~~~~~~~~d~aL~~- 339 (758)
T 1r6b_X 289 TIIGAGAA--SGGQVDAANLI-------KPLLSS-------------------GKIRVIGSTTYQEFSNIFEKDRALAR- 339 (758)
T ss_dssp TTTTSCCS--SSCHHHHHHHH-------SSCSSS-------------------CCCEEEEEECHHHHHCCCCCTTSSGG-
T ss_pred HHhhcCCC--CcchHHHHHHH-------HHHHhC-------------------CCeEEEEEeCchHHhhhhhcCHHHHh-
Confidence 99876532 11222222222 222222 6788999998753 58899999
Q ss_pred CcceeEEEeCCCCHHHHHHHHHHHhcCC------CCCcCCCHHHHHHh-----CCCCCHHHHHHHHHHHHHHHHH----h
Q psy7780 222 GRIDRKIEFPLPDEKTKRRIFNIHTSRM------TLAEDVNLQELIMA-----KDDLSGADIKAICTEAGLMALR----E 286 (317)
Q Consensus 222 gRf~~~I~~~~P~~~~r~~Il~~~l~~~------~~~~~~~~~~ia~~-----t~g~s~~dl~~l~~~A~~~a~~----~ 286 (317)
||+ .+.|+.|+.++|.+||+.+...+ .+. +..+..++.. +..+.|..+..++.+|+..+.. .
T Consensus 340 -Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~-~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~ 416 (758)
T 1r6b_X 340 -RFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYT-AKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSK 416 (758)
T ss_dssp -GEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCC
T ss_pred -Cce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccccc
Confidence 998 79999999999999998876542 121 1224445444 3456788899999988766554 2
Q ss_pred cCCCcCHHHHHHHHHHHH
Q psy7780 287 RRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 287 ~~~~it~~d~~~al~~v~ 304 (317)
....|+.+|+.+++....
T Consensus 417 ~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 417 RKKTVNVADIESVVARIA 434 (758)
T ss_dssp CCCSCCHHHHHHHHHHHS
T ss_pred cCCccCHHHHHHHHHHhc
Confidence 356799999999988754
No 46
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.70 E-value=3.9e-17 Score=140.86 Aligned_cols=170 Identities=15% Similarity=0.182 Sum_probs=121.1
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEechhhhhhhcCCchHHHHHHHHHHH------hhCCceEeeccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVVGSELIQKYLGDGPKLVRELFRVAE------EHAPSIVFIDEIDA 147 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~------~~~P~Ii~iDEiD~ 147 (317)
+++|+||||||||+ ++++++ +..++.++++.... ...++..+.... ...+++|+|||+|.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~ 113 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADA 113 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhh
Confidence 47899999999999 666654 46788888765322 223333333322 24578999999998
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeE
Q psy7780 148 VGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRK 227 (317)
Q Consensus 148 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~ 227 (317)
+... ....+..+++. .. .++.+|++||.++.+++++.+ ||. .
T Consensus 114 l~~~-----------~~~~l~~~l~~---~~---------------------~~~~~i~~~~~~~~~~~~l~~--r~~-~ 155 (226)
T 2chg_A 114 LTAD-----------AQAALRRTMEM---YS---------------------KSCRFILSCNYVSRIIEPIQS--RCA-V 155 (226)
T ss_dssp SCHH-----------HHHHHHHHHHH---TT---------------------TTEEEEEEESCGGGSCHHHHT--TSE-E
T ss_pred cCHH-----------HHHHHHHHHHh---cC---------------------CCCeEEEEeCChhhcCHHHHH--hCc-e
Confidence 8532 23444445443 11 567799999999999999999 997 8
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q psy7780 228 IEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKE 301 (317)
Q Consensus 228 I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~ 301 (317)
+.+++|+.+++.++++.++.+.+.. ++..+..+++.+.| +++.+.++++.++..+ ..|+.+|+.+++.
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 156 FRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC-----SCBCHHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC-----ceecHHHHHHHhc
Confidence 9999999999999999887543322 22345667777666 7777777777666543 6899999998875
No 47
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.69 E-value=3.1e-17 Score=151.77 Aligned_cols=186 Identities=15% Similarity=0.192 Sum_probs=129.5
Q ss_pred hhHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccC
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYD 154 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~ 154 (317)
.+.+|+||||||||+ ++++++ +.+++++++.++...+.+.........|.... ..+++|||||++.+..++
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~-- 114 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE-- 114 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH--
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh--
Confidence 368899999999999 888888 89999999998876655443322223333333 247899999999986432
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC---CCCccccCCCcce--eEEE
Q psy7780 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE---TLDPALIRPGRID--RKIE 229 (317)
Q Consensus 155 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~---~Ld~al~rpgRf~--~~I~ 229 (317)
..+..+..+++.+. .. +..+++++++.++ .++++|++ ||. ..++
T Consensus 115 -------~~~~~l~~~l~~~~---~~-------------------~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~ 163 (324)
T 1l8q_A 115 -------RTQIEFFHIFNTLY---LL-------------------EKQIILASDRHPQKLDGVSDRLVS--RFEGGILVE 163 (324)
T ss_dssp -------HHHHHHHHHHHHHH---HT-------------------TCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEE
T ss_pred -------HHHHHHHHHHHHHH---HC-------------------CCeEEEEecCChHHHHHhhhHhhh--cccCceEEE
Confidence 12233333433321 11 4566777777766 68999999 996 6899
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHH---HHH-hcCCCc-CHHHHHHHHHHH
Q psy7780 230 FPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLM---ALR-ERRMKV-TNEDFKKSKESV 303 (317)
Q Consensus 230 ~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~---a~~-~~~~~i-t~~d~~~al~~v 303 (317)
+++ +.++|.+|++.++...++. ++..+..++..+ | +.+++.++++.+... +++ .....| +.+++.+++...
T Consensus 164 l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~~ 240 (324)
T 1l8q_A 164 IEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVANY 240 (324)
T ss_dssp CCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHHHH
Confidence 999 9999999999998754432 233367788888 4 789999998877655 111 223457 888888887653
No 48
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.69 E-value=1.1e-17 Score=162.87 Aligned_cols=176 Identities=19% Similarity=0.225 Sum_probs=118.4
Q ss_pred hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAV 148 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l 148 (317)
+.||+||||||||+ ++|+.+ +.+|+.++++ .+|.|+.+..++.+|..+....|+|||||
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----- 274 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID----- 274 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC-----
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe-----
Confidence 67899999999999 888885 8889999988 77889999999999999999889999999
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccCCCc
Q psy7780 149 GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIRPGR 223 (317)
Q Consensus 149 ~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~rpgR 223 (317)
+ ....++.|..++ + . +.+.+|++||.++ .+|++++| |
T Consensus 275 ~----------~~~a~~~L~~~L---~----~-------------------g~v~vI~at~~~e~~~~~~~~~al~~--R 316 (468)
T 3pxg_A 275 A----------AIDASNILKPSL---A----R-------------------GELQCIGATTLDEYRKYIEKDAALER--R 316 (468)
T ss_dssp C------------------CCCT---T----S-------------------SSCEEEEECCTTTTHHHHTTCSHHHH--S
T ss_pred C----------chhHHHHHHHhh---c----C-------------------CCEEEEecCCHHHHHHHhhcCHHHHH--h
Confidence 1 011122222222 1 1 6789999999988 69999999 9
Q ss_pred ceeEEEeCCCCHHHHHHHHHHHhcCCCCC-----cCCCHHHHHHh-----CCCCCHHHHHHHHHHHHHHHHHhc-CCCcC
Q psy7780 224 IDRKIEFPLPDEKTKRRIFNIHTSRMTLA-----EDVNLQELIMA-----KDDLSGADIKAICTEAGLMALRER-RMKVT 292 (317)
Q Consensus 224 f~~~I~~~~P~~~~r~~Il~~~l~~~~~~-----~~~~~~~ia~~-----t~g~s~~dl~~l~~~A~~~a~~~~-~~~it 292 (317)
|. .|.|+.|+.+++.+|++.+..++... .+..+..++.. .+.+.+.....++.+|+..+..+. ...-.
T Consensus 317 f~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~~~~p~~ 395 (468)
T 3pxg_A 317 FQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPN 395 (468)
T ss_dssp EE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTSCCSS
T ss_pred Cc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhccCCCchH
Confidence 98 59999999999999999887664221 12224444444 344567788888888876554433 23344
Q ss_pred HHHHHHHHHHHH
Q psy7780 293 NEDFKKSKESVL 304 (317)
Q Consensus 293 ~~d~~~al~~v~ 304 (317)
.+++++.++++.
T Consensus 396 i~~l~~~i~~l~ 407 (468)
T 3pxg_A 396 LKELEQKLDEVR 407 (468)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555665555544
No 49
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.67 E-value=6.9e-18 Score=142.31 Aligned_cols=129 Identities=21% Similarity=0.280 Sum_probs=97.3
Q ss_pred hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhh--hhhcCCchHHHHHHHHHHHh-hCCceEeeccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELI--QKYLGDGPKLVRELFRVAEE-HAPSIVFIDEI 145 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~--~~~~g~~~~~l~~~f~~a~~-~~P~Ii~iDEi 145 (317)
+.+|+|+||||||+ ++++++ +.+++.++++.+. ..+.|.....++.++..+.. ..|+||+|||+
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~ 124 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDEL 124 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETG
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCH
Confidence 57899999999999 777775 7899999998877 34555667778888886644 55789999999
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccC
Q psy7780 146 DAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIR 220 (317)
Q Consensus 146 D~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~r 220 (317)
|.+...+.. .........+..+++. +++.+|++||.++ .+++++++
T Consensus 125 ~~l~~~~~~---~~~~~~~~~l~~~~~~--------------------------~~~~~i~~~~~~~~~~~~~~~~~l~~ 175 (195)
T 1jbk_A 125 HTMVGAGKA---DGAMDAGNMLKPALAR--------------------------GELHCVGATTLDEYRQYIEKDAALER 175 (195)
T ss_dssp GGGTT---------CCCCHHHHHHHHHT--------------------------TSCCEEEEECHHHHHHHTTTCHHHHT
T ss_pred HHHhccCcc---cchHHHHHHHHHhhcc--------------------------CCeEEEEeCCHHHHHHHHhcCHHHHH
Confidence 999866422 1122234455555432 5677999999876 78999999
Q ss_pred CCcceeEEEeCCCCHHHHHHHH
Q psy7780 221 PGRIDRKIEFPLPDEKTKRRIF 242 (317)
Q Consensus 221 pgRf~~~I~~~~P~~~~r~~Il 242 (317)
||+ .++++.|+.++|.+|+
T Consensus 176 --r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 176 --RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp --TEE-EEECCCCCHHHHHTTC
T ss_pred --Hhc-eeecCCCCHHHHHHHh
Confidence 998 6999999999999876
No 50
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.66 E-value=1.1e-16 Score=140.38 Aligned_cols=176 Identities=11% Similarity=0.060 Sum_probs=122.0
Q ss_pred hhHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccC
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYD 154 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~ 154 (317)
.+.+|+||||||||+ ++|+++ +..++.++++++..... ..+ .. ...|.+|+|||+|.+....
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~--~~~~~vliiDe~~~~~~~~-- 120 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIST----ALL----EG--LEQFDLICIDDVDAVAGHP-- 120 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCG----GGG----TT--GGGSSEEEEETGGGGTTCH--
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH----HHH----Hh--ccCCCEEEEeccccccCCH--
Confidence 368899999999999 666665 47889999988765431 111 11 1347899999999885432
Q ss_pred CCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCe-EEEEEcCCCC---CCCccccCCCcce--eEE
Q psy7780 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDV-KVIMATNRIE---TLDPALIRPGRID--RKI 228 (317)
Q Consensus 155 ~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v-~vI~tTN~~~---~Ld~al~rpgRf~--~~I 228 (317)
..+..+..+++... .. +.+ +|+++++.++ .+++++.+ ||. ..+
T Consensus 121 -------~~~~~l~~~l~~~~---~~-------------------~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i 169 (242)
T 3bos_A 121 -------LWEEAIFDLYNRVA---EQ-------------------KRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTY 169 (242)
T ss_dssp -------HHHHHHHHHHHHHH---HH-------------------CSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEE
T ss_pred -------HHHHHHHHHHHHHH---Hc-------------------CCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceE
Confidence 11233444443321 11 344 4444444444 45688998 886 899
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q psy7780 229 EFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKE 301 (317)
Q Consensus 229 ~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~ 301 (317)
++++|+.+++.++++.++...+.. ++..+..+++.+.| +.+++.++++.|...|..++ ..|+.+++.++++
T Consensus 170 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 170 QLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp ECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred EeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 999999999999999988654432 22346677777766 89999999999988886555 5699999988864
No 51
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.66 E-value=3.8e-16 Score=114.82 Aligned_cols=77 Identities=40% Similarity=0.731 Sum_probs=72.7
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhh
Q psy7780 231 PLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRK 307 (317)
Q Consensus 231 ~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~ 307 (317)
|+|+.++|.+||+.+++++++..++|+..+|..|+||||+||.++|++|++.|++++...|+++||.+|+++++.++
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~~~~ 77 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKD 77 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHC--
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcc
Confidence 78999999999999999999888999999999999999999999999999999999999999999999999998654
No 52
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.66 E-value=1e-16 Score=164.67 Aligned_cols=158 Identities=20% Similarity=0.241 Sum_probs=111.2
Q ss_pred hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAV 148 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l 148 (317)
+.||+||||||||+ ++|+.+ +.+++.+++ ..+|.|+.+..++.+|..+....|+|||||
T Consensus 203 ~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD----- 274 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID----- 274 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC-----
T ss_pred CeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc-----
Confidence 67899999999999 888886 889999888 567889999999999999999999999999
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccCCCc
Q psy7780 149 GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIRPGR 223 (317)
Q Consensus 149 ~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~rpgR 223 (317)
+. ...+..+ +..++ . +.+.+|++||..+ .+|++++| |
T Consensus 275 ~~----------~~~~~~L---~~~l~----~-------------------~~v~~I~at~~~~~~~~~~~d~al~r--R 316 (758)
T 3pxi_A 275 AA----------IDASNIL---KPSLA----R-------------------GELQCIGATTLDEYRKYIEKDAALER--R 316 (758)
T ss_dssp C---------------------CCCTT----S-------------------SSCEEEEECCTTTTHHHHTTCSHHHH--S
T ss_pred Cc----------hhHHHHH---HHHHh----c-------------------CCEEEEeCCChHHHHHHhhccHHHHh--h
Confidence 10 0111222 22222 2 6789999999988 79999999 9
Q ss_pred ceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCC-----HHHHHHh-----CCCCCHHHHHHHHHHHHHHHHHh
Q psy7780 224 IDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVN-----LQELIMA-----KDDLSGADIKAICTEAGLMALRE 286 (317)
Q Consensus 224 f~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~-----~~~ia~~-----t~g~s~~dl~~l~~~A~~~a~~~ 286 (317)
|. .|.|+.|+.+++.+||+.+..+......+. +..++.. ++++.|.....++.+|+..+..+
T Consensus 317 f~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~ 388 (758)
T 3pxi_A 317 FQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLR 388 (758)
T ss_dssp EE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHH
T ss_pred Cc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhh
Confidence 95 699999999999999998877643322222 3333332 45778888888998887655443
No 53
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.65 E-value=5.9e-17 Score=168.45 Aligned_cols=172 Identities=18% Similarity=0.217 Sum_probs=114.1
Q ss_pred hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhh--hhhcCCchHHHHHHHHHHHhh-CCceEeeccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELI--QKYLGDGPKLVRELFRVAEEH-APSIVFIDEI 145 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~--~~~~g~~~~~l~~~f~~a~~~-~P~Ii~iDEi 145 (317)
+.+|+||||||||+ ++|+.+ +.+++.++++.+. .+|.|+.+..++.+|..+... .|+||||||+
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi 272 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDEL 272 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecH
Confidence 57899999999999 888876 8899999999987 578899999999999999875 6899999999
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC----CCCccccCC
Q psy7780 146 DAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE----TLDPALIRP 221 (317)
Q Consensus 146 D~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~----~Ld~al~rp 221 (317)
|.+.+.... .+..+....+..++.. +.+.+|++||.++ .+|++++|
T Consensus 273 ~~l~~~~~~---~g~~~~~~~L~~~l~~--------------------------~~i~~I~at~~~~~~~~~~d~aL~r- 322 (854)
T 1qvr_A 273 HTVVGAGKA---EGAVDAGNMLKPALAR--------------------------GELRLIGATTLDEYREIEKDPALER- 322 (854)
T ss_dssp ----------------------HHHHHT--------------------------TCCCEEEEECHHHHHHHTTCTTTCS-
T ss_pred HHHhccCCc---cchHHHHHHHHHHHhC--------------------------CCeEEEEecCchHHhhhccCHHHHh-
Confidence 999866522 2223344555555543 6677999999875 48999999
Q ss_pred CcceeEEEeCCCCHHHHHHHHHHHhcCCC----CC-cCCCHHHHHHh-----CCCCCHHHHHHHHHHHHHHHHH
Q psy7780 222 GRIDRKIEFPLPDEKTKRRIFNIHTSRMT----LA-EDVNLQELIMA-----KDDLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 222 gRf~~~I~~~~P~~~~r~~Il~~~l~~~~----~~-~~~~~~~ia~~-----t~g~s~~dl~~l~~~A~~~a~~ 285 (317)
||+. |.|+.|+.+++.+|++.++.+.. .. .+..+..++.. ++.+.+.....++.+|+..+..
T Consensus 323 -Rf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~ 394 (854)
T 1qvr_A 323 -RFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRM 394 (854)
T ss_dssp -CCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHH
T ss_pred -CCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHh
Confidence 9985 99999999999999987765321 11 12223444443 4567888888888888766543
No 54
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.65 E-value=5.1e-17 Score=150.16 Aligned_cols=131 Identities=7% Similarity=0.047 Sum_probs=99.5
Q ss_pred hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhhh----------hh------cCCchHHHHHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELIQ----------KY------LGDGPKLVRELFRVA 132 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~~----------~~------~g~~~~~l~~~f~~a 132 (317)
..+++||||||||+ ++++++ ++.+++++|..+.+ +. .+++...++.+|...
T Consensus 47 ~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~ 126 (318)
T 3te6_A 47 LFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNV 126 (318)
T ss_dssp EEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHh
Confidence 46799999999999 787777 56899999876432 22 234567788899875
Q ss_pred --HhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 133 --EEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 133 --~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
....|+||+|||+|.+. . +.+|..+++.... .. .++.+|+++|.
T Consensus 127 ~~~~~~~~ii~lDE~d~l~-~------------q~~L~~l~~~~~~--~~-------------------s~~~vI~i~n~ 172 (318)
T 3te6_A 127 PKAKKRKTLILIQNPENLL-S------------EKILQYFEKWISS--KN-------------------SKLSIICVGGH 172 (318)
T ss_dssp CGGGSCEEEEEEECCSSSC-C------------THHHHHHHHHHHC--SS-------------------CCEEEEEECCS
T ss_pred hhccCCceEEEEecHHHhh-c------------chHHHHHHhcccc--cC-------------------CcEEEEEEecC
Confidence 34568999999999997 1 2466666654321 11 57899999999
Q ss_pred CCC----CCccccCCCcce-eEEEeCCCCHHHHHHHHHHHhcC
Q psy7780 211 IET----LDPALIRPGRID-RKIEFPLPDEKTKRRIFNIHTSR 248 (317)
Q Consensus 211 ~~~----Ld~al~rpgRf~-~~I~~~~P~~~~r~~Il~~~l~~ 248 (317)
.+. |++++++ ||. .+|.|++++.++..+|++..++.
T Consensus 173 ~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 173 NVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp SCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred cccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 865 5666777 886 68999999999999999998765
No 55
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.64 E-value=1.6e-16 Score=146.73 Aligned_cols=169 Identities=18% Similarity=0.214 Sum_probs=111.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhh-----CCceEeeccccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH-----APSIVFIDEIDAVGTKRY 153 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~-----~P~Ii~iDEiD~l~~~r~ 153 (317)
.+|++||||||||+ ++|++++.+++++++++. ....++..+..+... .+.||+|||+|.+..
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~-------~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~--- 119 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC-------KIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL--- 119 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC-------CHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG---
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc-------CHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc---
Confidence 46889999999999 999999999999998762 244556555543332 468999999999852
Q ss_pred CCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCC
Q psy7780 154 DSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLP 233 (317)
Q Consensus 154 ~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P 233 (317)
.+.+..|..+++... .++.+|++||+++.+++++++ ||. .+.|++|
T Consensus 120 -------~~~~~~L~~~le~~~------------------------~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~ 165 (324)
T 3u61_B 120 -------AESQRHLRSFMEAYS------------------------SNCSIIITANNIDGIIKPLQS--RCR-VITFGQP 165 (324)
T ss_dssp -------HHHHHHHHHHHHHHG------------------------GGCEEEEEESSGGGSCTTHHH--HSE-EEECCCC
T ss_pred -------HHHHHHHHHHHHhCC------------------------CCcEEEEEeCCccccCHHHHh--hCc-EEEeCCC
Confidence 123455555555421 456799999999999999999 996 7999999
Q ss_pred CHHHHHHHHHHHhcC-------CCCC-cC-CCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q psy7780 234 DEKTKRRIFNIHTSR-------MTLA-ED-VNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKE 301 (317)
Q Consensus 234 ~~~~r~~Il~~~l~~-------~~~~-~~-~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~ 301 (317)
+.++|.+|++.+... .++. ++ ..+..++..+.| +.+++.+.++.++ ....|+.+++..++.
T Consensus 166 ~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~L~~~~------~~~~i~~~~v~~~~~ 235 (324)
T 3u61_B 166 TDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGELDSYS------SKGVLDAGILSLVTN 235 (324)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHHHHHHG------GGTCBCC--------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHHHHHHh------ccCCCCHHHHHHHhC
Confidence 999987776554322 1222 22 346667777665 4445555555443 234577777766544
No 56
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.63 E-value=4.3e-16 Score=147.14 Aligned_cols=218 Identities=17% Similarity=0.227 Sum_probs=126.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhh-hhhcCCc-hHHHHHHHHHHH----hhCCceEeecccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELI-QKYLGDG-PKLVRELFRVAE----EHAPSIVFIDEIDAVGTKR 152 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~-~~~~g~~-~~~l~~~f~~a~----~~~P~Ii~iDEiD~l~~~r 152 (317)
++||+||||||||+ ++|+.++.+|+.++++.+. ..|.|+. ...+..+|..+. ...++||||||+|.+...+
T Consensus 74 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~ 153 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLS 153 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC----
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhc
Confidence 68999999999999 9999999999999999876 4566664 555666666432 3467999999999998775
Q ss_pred cCCCCCc---hhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC-------------------
Q psy7780 153 YDSNSGG---EREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR------------------- 210 (317)
Q Consensus 153 ~~~~~~~---~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~------------------- 210 (317)
.+..... ...++..|..++ ++..-.....................++++|++||.
T Consensus 154 ~~~~~~~~~~~~~~~~~Ll~~l---e~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~ 230 (376)
T 1um8_A 154 ENRSITRDVSGEGVQQALLKIV---EGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFT 230 (376)
T ss_dssp ----------CHHHHHHHHHHH---HCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCC
T ss_pred CCCceecccchHHHHHHHHHHh---hccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCC
Confidence 3321111 122444444444 432100000000000000000111256778888872
Q ss_pred ----------------------CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHH----Hhc---------CCCCC-cC
Q psy7780 211 ----------------------IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNI----HTS---------RMTLA-ED 254 (317)
Q Consensus 211 ----------------------~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~----~l~---------~~~~~-~~ 254 (317)
...+.|+|++ ||+..+.|++++.++...|+.. ++. +..+. ++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (376)
T 1um8_A 231 QEKMSKKEQEAILHLVQTHDLVTYGLIPELIG--RLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEE 308 (376)
T ss_dssp CSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECH
T ss_pred chhhhccchhHHHhhcCHHHHhhcCCChHHhc--CCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECH
Confidence 1135677788 9988999999999999999962 111 11111 22
Q ss_pred CCHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHhcC------CCcCHHHHHHHHHHHH
Q psy7780 255 VNLQELIMAKD--DLSGADIKAICTEAGLMALRERR------MKVTNEDFKKSKESVL 304 (317)
Q Consensus 255 ~~~~~ia~~t~--g~s~~dl~~l~~~A~~~a~~~~~------~~it~~d~~~al~~v~ 304 (317)
..+..++.... ....+.+.++++.+...++.+.. ..|+.+++.++.+.+.
T Consensus 309 ~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 366 (376)
T 1um8_A 309 EAIKEIAQLALERKTGARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEPLI 366 (376)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSSCCEE
T ss_pred HHHHHHHHHhcccccCcHHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCCCCcee
Confidence 23455655532 35789999999998887766432 2589999877655443
No 57
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.63 E-value=9.6e-16 Score=114.73 Aligned_cols=77 Identities=39% Similarity=0.699 Sum_probs=73.3
Q ss_pred eCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhh
Q psy7780 230 FPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYR 306 (317)
Q Consensus 230 ~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~ 306 (317)
-.+|+.++|.+||+.+++++++..++|++.+|+.|+||||+||.++|++|++.|+++....|+++||.+|++++..+
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHccC
Confidence 46899999999999999999988899999999999999999999999999999999999999999999999998754
No 58
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.63 E-value=1.7e-15 Score=141.06 Aligned_cols=192 Identities=15% Similarity=0.152 Sum_probs=134.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+.+|+||||||||+ ++|+++++++...+++.+. ....+..++.. ...++|+||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~------~~~~l~~~~~~--~~~~~v~~iDE~~~l~~~------- 117 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV------KQGDMAAILTS--LERGDVLFIDEIHRLNKA------- 117 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC------SHHHHHHHHHH--CCTTCEEEEETGGGCCHH-------
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc------CHHHHHHHHHH--ccCCCEEEEcchhhcCHH-------
Confidence 46899999999999 9999999988877765432 12334444432 224589999999988531
Q ss_pred chhHHHHHHHHHHHHhcCCC---cccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCH
Q psy7780 159 GEREIQRTMLELLNQLDGFD---SRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDE 235 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~---~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~ 235 (317)
.+..+...++.. +.. ......+ .. ......+.++++||++..|++++++ ||...+.+++|+.
T Consensus 118 ----~~e~L~~~~~~~-~~~i~~~~~~~~~-------~i-~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~ 182 (334)
T 1in4_A 118 ----VEELLYSAIEDF-QIDIMIGKGPSAK-------SI-RIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTV 182 (334)
T ss_dssp ----HHHHHHHHHHTS-CCCC-----------------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCH
T ss_pred ----HHHHHHHHHHhc-ccceeeccCcccc-------cc-cccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCH
Confidence 233333333221 100 0000000 00 0011357788899999999999999 9988899999999
Q ss_pred HHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Q psy7780 236 KTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 236 ~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~ 304 (317)
+++.+|++...+..+.. ++..+..++.++.| +++++.++++.+...|..++...|+.+++.++++.+.
T Consensus 183 ~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 183 KELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhC
Confidence 99999999887654433 22336778888877 7899999999999888888888899999999998754
No 59
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.62 E-value=1.9e-15 Score=141.54 Aligned_cols=189 Identities=19% Similarity=0.240 Sum_probs=134.6
Q ss_pred hHHHhhhcCCCchh---hhhhcC------CceEEEEechhhhh------h----------hcCCc-hHHHHHHHHHHHhh
Q psy7780 82 SELIQKYLGDGPKL---AVANQT------SATFLRVVGSELIQ------K----------YLGDG-PKLVRELFRVAEEH 135 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~------~~~~~~v~~s~l~~------~----------~~g~~-~~~l~~~f~~a~~~ 135 (317)
.++++||||||||+ ++++++ +..++.++|..... . ..|.. ......+++.....
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 126 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDY 126 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc
Confidence 67899999999999 788877 88999999865321 1 11222 23355555555544
Q ss_pred C-CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC---
Q psy7780 136 A-PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI--- 211 (317)
Q Consensus 136 ~-P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~--- 211 (317)
. |+||+|||+|.+...+. ...+..++..++... . .++.+|++||.+
T Consensus 127 ~~~~vlilDE~~~l~~~~~----------~~~l~~l~~~~~~~~-~-------------------~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 127 GSQVVIVLDEIDAFVKKYN----------DDILYKLSRINSEVN-K-------------------SKISFIGITNDVKFV 176 (386)
T ss_dssp CSCEEEEEETHHHHHHSSC----------STHHHHHHHHHHSCC-C---------------------EEEEEEESCGGGG
T ss_pred CCeEEEEEcChhhhhccCc----------CHHHHHHhhchhhcC-C-------------------CeEEEEEEECCCChH
Confidence 4 89999999999975431 124455555555431 1 578899999987
Q ss_pred CCCCccccCCCcce-eEEEeCCCCHHHHHHHHHHHhcC----CCCCcCCCHHHHHHhCC---CCCHHHHHHHHHHHHHHH
Q psy7780 212 ETLDPALIRPGRID-RKIEFPLPDEKTKRRIFNIHTSR----MTLAEDVNLQELIMAKD---DLSGADIKAICTEAGLMA 283 (317)
Q Consensus 212 ~~Ld~al~rpgRf~-~~I~~~~P~~~~r~~Il~~~l~~----~~~~~~~~~~~ia~~t~---g~s~~dl~~l~~~A~~~a 283 (317)
+.+++.+++ ||. +.+++++++.++..++++.++.. ..+. +..+..++..+. | +++.+.++|+.|...|
T Consensus 177 ~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~G-~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 177 DLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP-DNVIKLCAALAAREHG-DARRALDLLRVSGEIA 252 (386)
T ss_dssp GGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC-HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHH
T ss_pred hhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC-HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 467888888 775 58999999999999999987652 1222 222455565554 5 6788888999999888
Q ss_pred HHhcCCCcCHHHHHHHHHHHH
Q psy7780 284 LRERRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 284 ~~~~~~~it~~d~~~al~~v~ 304 (317)
..++...|+.+|+.+++..+.
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHHH
T ss_pred HhcCCCccCHHHHHHHHHHHh
Confidence 888888999999999988765
No 60
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.62 E-value=8.4e-16 Score=144.53 Aligned_cols=182 Identities=18% Similarity=0.207 Sum_probs=130.7
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----------CceEEEEechhhh-----------hhh-------cCCc-hHHHHHH
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----------SATFLRVVGSELI-----------QKY-------LGDG-PKLVREL 128 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----------~~~~~~v~~s~l~-----------~~~-------~g~~-~~~l~~~ 128 (317)
+++|+||||||||+ ++++++ +.+++.++|.... ... .|.. ...+..+
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 126 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKI 126 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHH
Confidence 57899999999999 788776 8999999987643 111 1222 2335555
Q ss_pred HHHHHhhCCceEeecccccccccccCCCCCchhHHHHH-HHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEE
Q psy7780 129 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRT-MLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMA 207 (317)
Q Consensus 129 f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~-l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~t 207 (317)
++.+....+ ||+|||+|.+...+. +.. +..++... .++.+|++
T Consensus 127 ~~~l~~~~~-vlilDEi~~l~~~~~----------~~~~l~~l~~~~-------------------------~~~~iI~~ 170 (384)
T 2qby_B 127 KNGTRNIRA-IIYLDEVDTLVKRRG----------GDIVLYQLLRSD-------------------------ANISVIMI 170 (384)
T ss_dssp HHHHSSSCE-EEEEETTHHHHHSTT----------SHHHHHHHHTSS-------------------------SCEEEEEE
T ss_pred HHHhccCCC-EEEEECHHHhccCCC----------CceeHHHHhcCC-------------------------cceEEEEE
Confidence 555554444 999999999965420 123 33443321 35779999
Q ss_pred cCCC---CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcC----CCCCcCCCHHHHHHhCCC--CCHHHHHHHHHH
Q psy7780 208 TNRI---ETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSR----MTLAEDVNLQELIMAKDD--LSGADIKAICTE 278 (317)
Q Consensus 208 TN~~---~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~----~~~~~~~~~~~ia~~t~g--~s~~dl~~l~~~ 278 (317)
||.+ +.+++++++ ||...++|++|+.+++.+|++.++.. ..+ ++..+..+++.+.+ -+++.+.++|+.
T Consensus 171 t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~G~~r~a~~~l~~ 247 (384)
T 2qby_B 171 SNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTY-DDEILSYIAAISAKEHGDARKAVNLLFR 247 (384)
T ss_dssp CSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSC-CSHHHHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCc-CHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 9987 679999999 98779999999999999999998753 222 22335666766651 256778888998
Q ss_pred HHHHHHHhcCCCcCHHHHHHHHHHHH
Q psy7780 279 AGLMALRERRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 279 A~~~a~~~~~~~it~~d~~~al~~v~ 304 (317)
|...|. +...|+.+|+.++++++.
T Consensus 248 a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 248 AAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred HHHHhc--CCCccCHHHHHHHHHHHh
Confidence 887775 567899999999998875
No 61
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=1.1e-15 Score=142.24 Aligned_cols=175 Identities=15% Similarity=0.156 Sum_probs=121.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCC------ceEEEEechhhhhhhcCCchHHHHHHHHHHHh----------------hC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS------ATFLRVVGSELIQKYLGDGPKLVRELFRVAEE----------------HA 136 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~------~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~----------------~~ 136 (317)
++||+||||||||+ ++|++++ ..++.+++++.. +...+++.+..... ..
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDER------GISIVREKVKNFARLTVSKPSKHDLENYPCPP 133 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC------CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccccc------chHHHHHHHHHHhhhcccccchhhcccCCCCC
Confidence 47899999999999 7777754 468888877631 12223332222211 13
Q ss_pred CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCc
Q psy7780 137 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDP 216 (317)
Q Consensus 137 P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~ 216 (317)
+.||+|||+|.+... .+..+..++++. . .+..+|++||.++.+++
T Consensus 134 ~~vliiDE~~~l~~~-----------~~~~Ll~~le~~---~---------------------~~~~~il~~~~~~~l~~ 178 (353)
T 1sxj_D 134 YKIIILDEADSMTAD-----------AQSALRRTMETY---S---------------------GVTRFCLICNYVTRIID 178 (353)
T ss_dssp CEEEEETTGGGSCHH-----------HHHHHHHHHHHT---T---------------------TTEEEEEEESCGGGSCH
T ss_pred ceEEEEECCCccCHH-----------HHHHHHHHHHhc---C---------------------CCceEEEEeCchhhCcc
Confidence 459999999988532 234455555442 1 34667888999999999
Q ss_pred cccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC-CcCHH
Q psy7780 217 ALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM-KVTNE 294 (317)
Q Consensus 217 al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~-~it~~ 294 (317)
++++ ||. .+.|++|+.++...+++..+.+.++. ++..+..+++.+.| +.+.+.++++.+...+-+.+.. .|+.+
T Consensus 179 ~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~~~~~~~~~~~It~~ 254 (353)
T 1sxj_D 179 PLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRRGITLLQSASKGAQYLGDGKNITST 254 (353)
T ss_dssp HHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHHHHHHHHTHHHHHHHCSCCCCCHH
T ss_pred hhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCCccCccccHH
Confidence 9999 996 89999999999999999887654432 23346778888777 5777777887777665444333 79999
Q ss_pred HHHHHHH
Q psy7780 295 DFKKSKE 301 (317)
Q Consensus 295 d~~~al~ 301 (317)
|+.+++.
T Consensus 255 ~v~~~~~ 261 (353)
T 1sxj_D 255 QVEELAG 261 (353)
T ss_dssp HHHHHHT
T ss_pred HHHHHhC
Confidence 9887654
No 62
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.62 E-value=1.1e-15 Score=133.02 Aligned_cols=170 Identities=18% Similarity=0.181 Sum_probs=118.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHH-
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAE- 133 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~- 133 (317)
.++++||||+|||+ +++++++. .++.++... ......++.+++.+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 120 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQY 120 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhh
Confidence 47899999999999 66665532 233333221 012334556665543
Q ss_pred ---hhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 134 ---EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 134 ---~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
...|.+|+|||+|.+.. ..+..++..++... .++.+|++||+
T Consensus 121 ~~~~~~~~vlviDe~~~l~~--------------~~~~~l~~~l~~~~---------------------~~~~~i~~t~~ 165 (250)
T 1njg_A 121 APARGRFKVYLIDEVHMLSR--------------HSFNALLKTLEEPP---------------------EHVKFLLATTD 165 (250)
T ss_dssp SCSSSSSEEEEEETGGGSCH--------------HHHHHHHHHHHSCC---------------------TTEEEEEEESC
T ss_pred chhcCCceEEEEECcccccH--------------HHHHHHHHHHhcCC---------------------CceEEEEEeCC
Confidence 23478999999998732 12233444444321 56889999999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
++.+++++++ |+ ..+++++|+.++..++++.++.+.+.. ++..+..+++.+.| +++.+.++++.|... ...
T Consensus 166 ~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~~~~~~~~~~~~----~~~ 237 (250)
T 1njg_A 166 PQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQAIAS----GDG 237 (250)
T ss_dssp GGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHTT----TTS
T ss_pred hHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc----cCc
Confidence 9999999999 87 589999999999999999887654332 22346778888877 899999999877533 345
Q ss_pred CcCHHHHHHHH
Q psy7780 290 KVTNEDFKKSK 300 (317)
Q Consensus 290 ~it~~d~~~al 300 (317)
.|+.+|+.+++
T Consensus 238 ~i~~~~v~~~~ 248 (250)
T 1njg_A 238 QVSTQAVSAML 248 (250)
T ss_dssp SBCHHHHHHHS
T ss_pred eecHHHHHHHh
Confidence 89999998875
No 63
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.62 E-value=1.3e-16 Score=156.05 Aligned_cols=194 Identities=18% Similarity=0.138 Sum_probs=118.4
Q ss_pred hhHHHhhhcCCCchh---hhhhcCC--ceEEEEec-----hhhhhhhcCCchHHHHHHHHHHHhh---CCceEeeccccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTS--ATFLRVVG-----SELIQKYLGDGPKLVRELFRVAEEH---APSIVFIDEIDA 147 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~--~~~~~v~~-----s~l~~~~~g~~~~~l~~~f~~a~~~---~P~Ii~iDEiD~ 147 (317)
+|+||+||||||||+ ++|+.++ .+|..+.+ +++++.+.+..... ...|..+... .++|+|||||+.
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r 120 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWK 120 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBCCTTSGGGCSEEEEESGGG
T ss_pred CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhh-chhHHhhhccCCCcceeeeHHhHhh
Confidence 389999999999999 8888884 35665554 33443332222111 1223222222 468999999986
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC---CCccccCCCcc
Q psy7780 148 VGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET---LDPALIRPGRI 224 (317)
Q Consensus 148 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~---Ld~al~rpgRf 224 (317)
+. ...+..|.+.+++ ..- .........+.+ ++|+|||++.. +.+++++ ||
T Consensus 121 ~~-----------~~~q~~LL~~lee---~~v----------~i~G~~~~~~~~-~iI~ATN~lpe~~~~~~aLld--RF 173 (500)
T 3nbx_X 121 AG-----------PAILNTLLTAINE---RQF----------RNGAHVEKIPMR-LLVAASNELPEADSSLEALYD--RM 173 (500)
T ss_dssp CC-----------HHHHHHHHHHHHS---SEE----------ECSSSEEECCCC-EEEEEESSCCCTTCTTHHHHT--TC
T ss_pred hc-----------HHHHHHHHHHHHH---Hhc----------cCCCCcCCcchh-hhhhccccCCCccccHHHHHH--HH
Confidence 52 2234444444442 110 011122233344 46778886322 4459999 99
Q ss_pred eeEEEeCCCCH-HHHHHHHHHHhcCC-------------------------CCCcCCCHHHHHHh---------CCCCCH
Q psy7780 225 DRKIEFPLPDE-KTKRRIFNIHTSRM-------------------------TLAEDVNLQELIMA---------KDDLSG 269 (317)
Q Consensus 225 ~~~I~~~~P~~-~~r~~Il~~~l~~~-------------------------~~~~~~~~~~ia~~---------t~g~s~ 269 (317)
...+.+|+|+. +++..|++.+.... .++++ -.+.++.. ..|.|+
T Consensus 174 ~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~-v~e~i~~l~~~lr~~r~~~~iS~ 252 (500)
T 3nbx_X 174 LIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDH-VFELIFMLRQQLDKLPDAPYVSD 252 (500)
T ss_dssp CEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHH-HHHHHHHHHHHHHHCSSSCCCCH
T ss_pred HHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchH-HHHHHHHHHHHhhcCCCCCccch
Confidence 99999999986 78899998764311 11111 12223222 258899
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Q psy7780 270 ADIKAICTEAGLMALRERRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 270 ~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~ 304 (317)
+.+..+++.|...|..+++..|+.+|+. ++..++
T Consensus 253 R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL 286 (500)
T 3nbx_X 253 RRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCL 286 (500)
T ss_dssp HHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTS
T ss_pred hHHHHHHHHHHHHHhhcCCccccchHHH-HHHhhh
Confidence 9999999999999999999999999987 544443
No 64
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.59 E-value=5.4e-16 Score=142.01 Aligned_cols=179 Identities=18% Similarity=0.249 Sum_probs=117.6
Q ss_pred hhHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhh-----hhcCCchH-----HHHHHHHHHHhhCCceEeecc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQ-----KYLGDGPK-----LVRELFRVAEEHAPSIVFIDE 144 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~-----~~~g~~~~-----~l~~~f~~a~~~~P~Ii~iDE 144 (317)
+++||+||||||||+ ++|+.+ +.+++.++|+.+.. ...|.... ....+.........+||||||
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDE 127 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDA 127 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEET
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeC
Confidence 367999999999999 788877 56799999987533 22221100 001222333344458999999
Q ss_pred cccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC--------------
Q psy7780 145 IDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR-------------- 210 (317)
Q Consensus 145 iD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~-------------- 210 (317)
+|.+.+ ..+..|.++++.-.-..... ... .-.++++|+|||.
T Consensus 128 i~~l~~-----------~~~~~Ll~~le~~~~~~~~~------------~~~-~~~~~iiI~ttn~~~~~i~~~~~~~~~ 183 (311)
T 4fcw_A 128 IEKAHP-----------DVFNILLQMLDDGRLTDSHG------------RTV-DFRNTVIIMTSNLGSPLILEGLQKGWP 183 (311)
T ss_dssp GGGSCH-----------HHHHHHHHHHHHSEEECTTS------------CEE-ECTTEEEEEEESTTHHHHHTTTTSCCC
T ss_pred hhhcCH-----------HHHHHHHHHHhcCEEEcCCC------------CEE-ECCCcEEEEecccCHHHHHhhhccccc
Confidence 998832 34555555555421110000 000 0146889999999
Q ss_pred ------------CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC---------CCC-cCCCHHHHHHhCC--C
Q psy7780 211 ------------IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM---------TLA-EDVNLQELIMAKD--D 266 (317)
Q Consensus 211 ------------~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~---------~~~-~~~~~~~ia~~t~--g 266 (317)
...++++|++ ||+..+.|++|+.+++..|++.++.+. ... ++..+..++.... .
T Consensus 184 ~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 261 (311)
T 4fcw_A 184 YERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPV 261 (311)
T ss_dssp SSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTT
T ss_pred HHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCcc
Confidence 4578899998 999999999999999999999887542 111 2223555666554 5
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy7780 267 LSGADIKAICTEAGLMALR 285 (317)
Q Consensus 267 ~s~~dl~~l~~~A~~~a~~ 285 (317)
.+.++|+++++++...+..
T Consensus 262 gn~R~L~~~i~~~~~~~~~ 280 (311)
T 4fcw_A 262 FGARPLRRVIQRELETPLA 280 (311)
T ss_dssp TBTTTHHHHHHHHTHHHHH
T ss_pred CCchhHHHHHHHHHHHHHH
Confidence 7899999999988776553
No 65
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.58 E-value=5.1e-15 Score=111.33 Aligned_cols=76 Identities=30% Similarity=0.557 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhcc
Q psy7780 234 DEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKE 309 (317)
Q Consensus 234 ~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~~ 309 (317)
+.++|.+||+.+++++++..++|+..+|+.|+||||+||.++|++|++.|+++....|+++||.+|++++......
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~~~~~ 77 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKK 77 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC----
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhcCccc
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999866544
No 66
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.57 E-value=1.1e-14 Score=136.81 Aligned_cols=189 Identities=14% Similarity=0.110 Sum_probs=131.4
Q ss_pred hHHHhhhcCCCchh---hhhhcC----CceEEEEechhhhh------h---h-------cCCch-HHHHHHHHHHHh-hC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----SATFLRVVGSELIQ------K---Y-------LGDGP-KLVRELFRVAEE-HA 136 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----~~~~~~v~~s~l~~------~---~-------~g~~~-~~l~~~f~~a~~-~~ 136 (317)
..+++||||||||+ ++++++ +..++.++|+...+ . . .|... .....+...... ..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 125 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDL 125 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 46899999999999 777777 67899999765321 1 0 12122 222333333333 44
Q ss_pred CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC---CC
Q psy7780 137 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI---ET 213 (317)
Q Consensus 137 P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~---~~ 213 (317)
|.||+|||+|.+. ...+..++..++...... ..++.+|++||.+ +.
T Consensus 126 ~~vlilDE~~~l~--------------~~~~~~L~~~~~~~~~~~-----------------~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 126 YMFLVLDDAFNLA--------------PDILSTFIRLGQEADKLG-----------------AFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp CEEEEEETGGGSC--------------HHHHHHHHHHTTCHHHHS-----------------SCCEEEEEEESSTHHHHT
T ss_pred eEEEEEECccccc--------------hHHHHHHHHHHHhCCCCC-----------------cCCEEEEEEECCchHHHH
Confidence 8899999999881 123334444443322100 0367899999988 67
Q ss_pred CCccccCCCccee-EEEeCCCCHHHHHHHHHHHhcCC---CCCcCCCHHHHHHhC---------CCCCHHHHHHHHHHHH
Q psy7780 214 LDPALIRPGRIDR-KIEFPLPDEKTKRRIFNIHTSRM---TLAEDVNLQELIMAK---------DDLSGADIKAICTEAG 280 (317)
Q Consensus 214 Ld~al~rpgRf~~-~I~~~~P~~~~r~~Il~~~l~~~---~~~~~~~~~~ia~~t---------~g~s~~dl~~l~~~A~ 280 (317)
+++.+.+ ||.. .+.|++++.++..++++..+... ..-++..+..+++.+ .| .++.+.++|+.|.
T Consensus 175 l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G-~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 175 LDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRG-DARLAIDILYRSA 251 (389)
T ss_dssp SCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSC-CHHHHHHHHHHHH
T ss_pred hCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCC-cHHHHHHHHHHHH
Confidence 8889888 8875 89999999999999998887531 111233456677777 34 6888999999999
Q ss_pred HHHHHhcCCCcCHHHHHHHHHHHH
Q psy7780 281 LMALRERRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 281 ~~a~~~~~~~it~~d~~~al~~v~ 304 (317)
..|..++...++.+|+..++..+.
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHh
Confidence 999888888999999999988764
No 67
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.57 E-value=3.8e-16 Score=131.33 Aligned_cols=122 Identities=24% Similarity=0.330 Sum_probs=91.9
Q ss_pred hHHHhhhcCCCchh---hhhhcC----------CceEEEEechhhhhh--hcCCchHHHHHHHHHHHhh-CCceEeeccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----------SATFLRVVGSELIQK--YLGDGPKLVRELFRVAEEH-APSIVFIDEI 145 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----------~~~~~~v~~s~l~~~--~~g~~~~~l~~~f~~a~~~-~P~Ii~iDEi 145 (317)
+.+|+||||||||+ ++|+++ +.+++.++++.+... +.|.....++.++..+... .|++|+|||+
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~ 124 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEI 124 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTG
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCH
Confidence 57899999999999 777775 789999999887642 4455566788888887765 6789999999
Q ss_pred ccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCccccC
Q psy7780 146 DAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPALIR 220 (317)
Q Consensus 146 D~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~al~r 220 (317)
|.+.+.+.. .....++.+.+..+++. .++.+|++||.++ .+++++++
T Consensus 125 ~~l~~~~~~--~~~~~~~~~~l~~~~~~--------------------------~~~~ii~~~~~~~~~~~~~~~~~l~~ 176 (187)
T 2p65_A 125 HTVVGAGAV--AEGALDAGNILKPMLAR--------------------------GELRCIGATTVSEYRQFIEKDKALER 176 (187)
T ss_dssp GGGSSSSSS--CTTSCCTHHHHHHHHHT--------------------------TCSCEEEEECHHHHHHHTTTCHHHHH
T ss_pred HHhcccccc--cccchHHHHHHHHHHhc--------------------------CCeeEEEecCHHHHHHHHhccHHHHH
Confidence 999866531 11123344555555433 5677999999875 68999999
Q ss_pred CCcceeEEEeCCCC
Q psy7780 221 PGRIDRKIEFPLPD 234 (317)
Q Consensus 221 pgRf~~~I~~~~P~ 234 (317)
||+ .++++.|+
T Consensus 177 --R~~-~i~i~~p~ 187 (187)
T 2p65_A 177 --RFQ-QILVEQPS 187 (187)
T ss_dssp --HEE-EEECCSCC
T ss_pred --hcC-cccCCCCC
Confidence 998 59999985
No 68
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.56 E-value=4e-15 Score=136.15 Aligned_cols=172 Identities=15% Similarity=0.178 Sum_probs=112.9
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEechhhhhhhcCCchHHHHHHHHHH-H-hhCCceEeeccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVVGSELIQKYLGDGPKLVRELFRVA-E-EHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a-~-~~~P~Ii~iDEiD~l~~~ 151 (317)
++||+||||||||+ ++|+++ +.+++.+++++..+ .......+....... . ...+.||+|||+|.+...
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~ 117 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD 117 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC--TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC--hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH
Confidence 57999999999999 777765 45688888876422 111122222221110 0 134789999999988431
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeC
Q psy7780 152 RYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFP 231 (317)
Q Consensus 152 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~ 231 (317)
....++..++... .++.+|++||.++.+++++++ ||. .+.|+
T Consensus 118 --------------~~~~L~~~le~~~---------------------~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~ 159 (319)
T 2chq_A 118 --------------AQAALRRTMEMYS---------------------KSCRFILSCNYVSRIIEPIQS--RCA-VFRFK 159 (319)
T ss_dssp --------------HHHTTGGGTSSSS---------------------SSEEEEEEESCGGGSCHHHHT--TCE-EEECC
T ss_pred --------------HHHHHHHHHHhcC---------------------CCCeEEEEeCChhhcchHHHh--hCe-EEEec
Confidence 1223333443321 568899999999999999999 996 89999
Q ss_pred CCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHH
Q psy7780 232 LPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS 299 (317)
Q Consensus 232 ~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~a 299 (317)
+|+.+++.++++.++.+.+.. ++..+..++..+.| +.+.+.++++.+... ...++.+++.++
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~~~-----~~~i~~~~v~~~ 222 (319)
T 2chq_A 160 PVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAI-----GEVVDADTIYQI 222 (319)
T ss_dssp CCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHHHS-----SSCBCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHc-----CCCCCHHHHHHH
Confidence 999999999999988765443 22345667766655 566666666654432 235666666543
No 69
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.56 E-value=5.2e-15 Score=151.96 Aligned_cols=174 Identities=18% Similarity=0.218 Sum_probs=118.1
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~ 155 (317)
+.||+||||||||+ ++|+.+ +.+|++++|+++...+... ...++...+...++||||||||.+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~----~~~l~~~~~~~~~~vl~lDEi~~~~------ 592 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS----GGQLTEKVRRKPYSVVLLDAIEKAH------ 592 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHHHHCSSSEEEEECGGGSC------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc----cchhhHHHHhCCCeEEEEeCccccC------
Confidence 48999999999999 888886 6899999999998876654 2233444555667999999999873
Q ss_pred CCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCC------------CCccccCCCc
Q psy7780 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET------------LDPALIRPGR 223 (317)
Q Consensus 156 ~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~------------Ld~al~rpgR 223 (317)
.+++..|.++++.-. +... .+ ......++++|+|||.+.. ++|+|++ |
T Consensus 593 -----~~~~~~Ll~~le~g~-~~~~-~g-----------~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--R 652 (758)
T 3pxi_A 593 -----PDVFNILLQVLEDGR-LTDS-KG-----------RTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--R 652 (758)
T ss_dssp -----HHHHHHHHHHHHHSB-CC-----------------CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--T
T ss_pred -----HHHHHHHHHHhccCe-EEcC-CC-----------CEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--h
Confidence 234556666665411 1100 00 0011257899999997654 7889998 9
Q ss_pred ceeEEEeCCCCHHHHHHHHHHHhcCC-------CCC---cCCCHHHHHHh--CCCCCHHHHHHHHHHHHHHHHH
Q psy7780 224 IDRKIEFPLPDEKTKRRIFNIHTSRM-------TLA---EDVNLQELIMA--KDDLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 224 f~~~I~~~~P~~~~r~~Il~~~l~~~-------~~~---~~~~~~~ia~~--t~g~s~~dl~~l~~~A~~~a~~ 285 (317)
|+..|.|++|+.+++.+|++.++... ... ++..++.++.. ...+..++|+++++++...++.
T Consensus 653 l~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~~v~~~l~ 726 (758)
T 3pxi_A 653 IDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLS 726 (758)
T ss_dssp SSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHHHTHHHHH
T ss_pred CCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHHHHHHHHH
Confidence 99999999999999999998877542 111 22234555553 3356788999999887665543
No 70
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=2.7e-15 Score=147.66 Aligned_cols=178 Identities=15% Similarity=0.202 Sum_probs=111.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCch-------HHHHHHHHHH-----HhhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGP-------KLVRELFRVA-----EEHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~-------~~l~~~f~~a-----~~~~P~Ii~iDEiD 146 (317)
+.||+||||||||+ ++|++++.+++.++++++...+..+.. ..+..+|..+ ....++||||||+|
T Consensus 79 ~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid 158 (516)
T 1sxj_A 79 AAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVD 158 (516)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCC
Confidence 68999999999999 999999999999999876543221110 0133344444 23567899999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCccee
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDR 226 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~ 226 (317)
.+.... ......+..+++. .. ..+++|+++.....++ .++| |+ .
T Consensus 159 ~l~~~~--------~~~l~~L~~~l~~---~~---------------------~~iIli~~~~~~~~l~-~l~~--r~-~ 202 (516)
T 1sxj_A 159 GMSGGD--------RGGVGQLAQFCRK---TS---------------------TPLILICNERNLPKMR-PFDR--VC-L 202 (516)
T ss_dssp GCCTTS--------TTHHHHHHHHHHH---CS---------------------SCEEEEESCTTSSTTG-GGTT--TS-E
T ss_pred ccchhh--------HHHHHHHHHHHHh---cC---------------------CCEEEEEcCCCCccch-hhHh--ce-E
Confidence 997532 1122344444443 11 3344444433334454 4555 54 5
Q ss_pred EEEeCCCCHHHHHHHHHHHhcC--CCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHH
Q psy7780 227 KIEFPLPDEKTKRRIFNIHTSR--MTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKES 302 (317)
Q Consensus 227 ~I~~~~P~~~~r~~Il~~~l~~--~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~ 302 (317)
.+.|++|+.+++.++++..+.+ ..++ +..+..+++.+.| |++.+++.....+. ....|+.+++.+++..
T Consensus 203 ~i~f~~~~~~~~~~~L~~i~~~~~~~i~-~~~l~~la~~s~G----diR~~i~~L~~~~~--~~~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 203 DIQFRRPDANSIKSRLMTIAIREKFKLD-PNVIDRLIQTTRG----DIRQVINLLSTIST--TTKTINHENINEISKA 273 (516)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCCC-TTHHHHHHHHTTT----CHHHHHHHHTHHHH--HSSCCCTTHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCC----cHHHHHHHHHHHHh--cCCCCchHHHHHHHHh
Confidence 8999999999999999877643 3333 3347888888755 44444443322222 3456888888776654
No 71
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=1.2e-14 Score=133.13 Aligned_cols=170 Identities=13% Similarity=0.147 Sum_probs=118.4
Q ss_pred hHHHhhhcCCCchh---hhhhcC-----CceEEEEechhhhhhhcCCchHHHHHHHHHHH-------hhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT-----SATFLRVVGSELIQKYLGDGPKLVRELFRVAE-------EHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~-----~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~-------~~~P~Ii~iDEiD 146 (317)
+++|+||||+|||+ ++|+++ +..++.+++++. .+...++++++... ...+.||+|||+|
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~ 117 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD------RGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEAD 117 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC------CSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc------cChHHHHHHHHHHHhccccCCCCCceEEEEECcc
Confidence 37899999999999 777765 456888887652 12445666666554 2337899999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCccee
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDR 226 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~ 226 (317)
.+... ....|..++++ .. .++.+|++||.++.+++++++ |+.
T Consensus 118 ~l~~~-----------~~~~L~~~le~---~~---------------------~~~~~il~~~~~~~l~~~l~s--r~~- 159 (323)
T 1sxj_B 118 SMTAG-----------AQQALRRTMEL---YS---------------------NSTRFAFACNQSNKIIEPLQS--QCA- 159 (323)
T ss_dssp GSCHH-----------HHHTTHHHHHH---TT---------------------TTEEEEEEESCGGGSCHHHHT--TSE-
T ss_pred cCCHH-----------HHHHHHHHHhc---cC---------------------CCceEEEEeCChhhchhHHHh--hce-
Confidence 88432 23344444443 11 557788899999999999999 886
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q psy7780 227 KIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKE 301 (317)
Q Consensus 227 ~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~ 301 (317)
.+.|++|+.+++.++++..+.+.+.. ++..+..+++.+.| +++.+.++++.+... ...++.+++.+++.
T Consensus 160 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~~~-----~~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 160 ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTVAG-----HGLVNADNVFKIVD 229 (323)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHH-----HSSBCHHHHHHHHT
T ss_pred EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc-----CCCcCHHHHHHHHC
Confidence 89999999999999999887543322 22345677777766 566666666655422 14588888876654
No 72
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.53 E-value=2.5e-15 Score=150.18 Aligned_cols=195 Identities=17% Similarity=0.116 Sum_probs=126.7
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEE----echhhhhh-----hcCCchHHHHHHHHHHHhhCCceEeeccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRV----VGSELIQK-----YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v----~~s~l~~~-----~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
++||+||||||||+ ++|+.++..++.. +++.+... ..|..... ...+..| ..+|+||||+|.+.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~-~G~l~~A---~~gil~IDEid~l~ 404 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLE-AGALVLA---DGGIAVIDEIDKMR 404 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEE-ECHHHHH---SSSEECCTTTTCCC
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeecccccccccc-CCeeEec---CCCcEEeehhhhCC
Confidence 68999999999999 8898887766552 22222221 11111100 0112223 34799999999874
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-------------CCCc
Q psy7780 150 TKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-------------TLDP 216 (317)
Q Consensus 150 ~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-------------~Ld~ 216 (317)
+. .+..|.+.+++ -.-.. ........++.++.||+|||+++ .|++
T Consensus 405 ~~-----------~q~~Ll~~le~---~~i~i--------~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~ 462 (595)
T 3f9v_A 405 DE-----------DRVAIHEAMEQ---QTVSI--------AKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPP 462 (595)
T ss_dssp SH-----------HHHHHHHHHHS---SSEEE--------ESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCS
T ss_pred Hh-----------HhhhhHHHHhC---CEEEE--------ecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCH
Confidence 32 34455555543 11100 00111233447889999999987 8999
Q ss_pred cccCCCcce-eEEEeCCCCHHHHHHHHHHHhcCCC--------------------------CCcCCCHHHHHHh------
Q psy7780 217 ALIRPGRID-RKIEFPLPDEKTKRRIFNIHTSRMT--------------------------LAEDVNLQELIMA------ 263 (317)
Q Consensus 217 al~rpgRf~-~~I~~~~P~~~~r~~Il~~~l~~~~--------------------------~~~~~~~~~ia~~------ 263 (317)
+|++ ||| ..+..+.|+.+ ...|.+..+.... .-++...+.+.+.
T Consensus 463 aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~ 539 (595)
T 3f9v_A 463 TILS--RFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRK 539 (595)
T ss_dssp SSGG--GCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSC
T ss_pred HHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999 998 45666778877 8888877665321 0111223333333
Q ss_pred --------CCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHh
Q psy7780 264 --------KDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLY 305 (317)
Q Consensus 264 --------t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~ 305 (317)
+.+.|++.+.++++.|...|..+.+..|+.+|+.+|++-+..
T Consensus 540 ~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~ 589 (595)
T 3f9v_A 540 KSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRL 589 (595)
T ss_dssp SCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHH
T ss_pred hhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHH
Confidence 347899999999999999998899999999999999986654
No 73
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.53 E-value=1.9e-14 Score=132.10 Aligned_cols=154 Identities=19% Similarity=0.240 Sum_probs=106.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCC-----ceEEEEechhhhhhhcCCchHHHHHHHHH-HH-----hhCCceEeeccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS-----ATFLRVVGSELIQKYLGDGPKLVRELFRV-AE-----EHAPSIVFIDEIDA 147 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~-----~~~~~v~~s~l~~~~~g~~~~~l~~~f~~-a~-----~~~P~Ii~iDEiD~ 147 (317)
++||+||||||||+ ++|+++. ..++.+++++.... ..++..+.. +. ...+.+|+|||+|.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~ 121 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFLDEADA 121 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHH------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCch------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCc
Confidence 57999999999999 7777652 45888888764321 122222222 11 13478999999998
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeE
Q psy7780 148 VGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRK 227 (317)
Q Consensus 148 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~ 227 (317)
+... .+..+..+++. .. .++.+|++||.++.+++++.+ ||. .
T Consensus 122 l~~~-----------~~~~L~~~le~---~~---------------------~~~~~i~~~~~~~~l~~~l~s--r~~-~ 163 (327)
T 1iqp_A 122 LTQD-----------AQQALRRTMEM---FS---------------------SNVRFILSCNYSSKIIEPIQS--RCA-I 163 (327)
T ss_dssp SCHH-----------HHHHHHHHHHH---TT---------------------TTEEEEEEESCGGGSCHHHHH--TEE-E
T ss_pred CCHH-----------HHHHHHHHHHh---cC---------------------CCCeEEEEeCCccccCHHHHh--hCc-E
Confidence 8432 23445455543 11 567789999999999999999 987 8
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHH
Q psy7780 228 IEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAG 280 (317)
Q Consensus 228 I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~ 280 (317)
+.|++|+.++...+++..+.+.+.. ++..+..++..+.| +++.+.++++.+.
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 164 FRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 216 (327)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 9999999999999999887655443 23345667777666 6777777776554
No 74
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.53 E-value=7.5e-15 Score=150.71 Aligned_cols=175 Identities=17% Similarity=0.204 Sum_probs=119.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh------------hcCCchHHHHHHHHHHHhhCCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK------------YLGDGPKLVRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~------------~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
+.||+||||||||+ ++|+.++.+|+.++++++..+ |+|..+. ..+....+...++||||||+|
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~ 567 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIE 567 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCcccc--chHHHHHHhCCCcEEEEeCcc
Confidence 57999999999999 999999999999999987653 3322111 223444555667999999999
Q ss_pred cccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC--------------
Q psy7780 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-------------- 212 (317)
Q Consensus 147 ~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-------------- 212 (317)
.+. .+++..|.++++. +.-.... ..... ..++++|+|||...
T Consensus 568 ~~~-----------~~~~~~Ll~~le~--~~~~~~~----------g~~~~-~~~~~iI~tsN~~~~~~~~~~~g~~~~~ 623 (758)
T 1r6b_X 568 KAH-----------PDVFNILLQVMDN--GTLTDNN----------GRKAD-FRNVVLVMTTNAGVRETERKSIGLIHQD 623 (758)
T ss_dssp GSC-----------HHHHHHHHHHHHH--SEEEETT----------TEEEE-CTTEEEEEEECSSCC-------------
T ss_pred ccC-----------HHHHHHHHHHhcC--cEEEcCC----------CCEEe-cCCeEEEEecCcchhhhhhcccCccccc
Confidence 863 2345555555553 1100000 00000 15788999999854
Q ss_pred -----------CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC---------CCC-cCCCHHHHHHh--CCCCCH
Q psy7780 213 -----------TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM---------TLA-EDVNLQELIMA--KDDLSG 269 (317)
Q Consensus 213 -----------~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~---------~~~-~~~~~~~ia~~--t~g~s~ 269 (317)
.++|+|++ ||+..|.|++|+.+++..|++.++.+. .+. ++..+..+++. ...+..
T Consensus 624 ~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~ 701 (758)
T 1r6b_X 624 NSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGA 701 (758)
T ss_dssp ----CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBT
T ss_pred hHHHHHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCc
Confidence 67899999 999999999999999999999887632 111 12224455554 345678
Q ss_pred HHHHHHHHHHHHHHH
Q psy7780 270 ADIKAICTEAGLMAL 284 (317)
Q Consensus 270 ~dl~~l~~~A~~~a~ 284 (317)
+++.++++.+...++
T Consensus 702 R~l~~~i~~~~~~~l 716 (758)
T 1r6b_X 702 RPMARVIQDNLKKPL 716 (758)
T ss_dssp TTHHHHHHHHHTHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999988776544
No 75
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.51 E-value=3.6e-14 Score=132.83 Aligned_cols=169 Identities=18% Similarity=0.175 Sum_probs=116.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||||||||+ ++|+.+++ .++.++++. ......++.+++.+..
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~ 113 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQY 113 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhh
Confidence 46899999999999 77776643 233443321 1123356777776653
Q ss_pred ----hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 ----HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ----~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
..+.||+|||+|.+... ... .++..++... .++++|++||.
T Consensus 114 ~~~~~~~~vliiDe~~~l~~~-----------~~~---~Ll~~le~~~---------------------~~~~~Il~~~~ 158 (373)
T 1jr3_A 114 APARGRFKVYLIDEVHMLSRH-----------SFN---ALLKTLEEPP---------------------EHVKFLLATTD 158 (373)
T ss_dssp CCSSSSSEEEEEECGGGSCHH-----------HHH---HHHHHHHSCC---------------------SSEEEEEEESC
T ss_pred ccccCCeEEEEEECcchhcHH-----------HHH---HHHHHHhcCC---------------------CceEEEEEeCC
Confidence 23679999999988321 223 3444444321 56889999999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRM 289 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~ 289 (317)
++.+++++++ |+ ..+.|++|+.++..++++.++++.+.. ++..+..++..+.| +++++.++++.+...+ ..
T Consensus 159 ~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r~~~~~l~~~~~~~----~~ 230 (373)
T 1jr3_A 159 PQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQAIASG----DG 230 (373)
T ss_dssp GGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHHHHHHHHHHHHHHT----TT
T ss_pred hHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHhc----CC
Confidence 9999999999 88 589999999999999999887654332 22235678888877 7888988888775432 34
Q ss_pred CcCHHHHHHH
Q psy7780 290 KVTNEDFKKS 299 (317)
Q Consensus 290 ~it~~d~~~a 299 (317)
.|+.+++.++
T Consensus 231 ~i~~~~v~~~ 240 (373)
T 1jr3_A 231 QVSTQAVSAM 240 (373)
T ss_dssp CBCHHHHHHH
T ss_pred cccHHHHHHH
Confidence 5787777655
No 76
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.47 E-value=9e-14 Score=103.22 Aligned_cols=75 Identities=41% Similarity=0.747 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhc
Q psy7780 234 DEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKK 308 (317)
Q Consensus 234 ~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~ 308 (317)
+.++|.+||+.+++++++..++|+..+|..|+||||+||.++|++|++.|+++....|+++||..|++++...-.
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHccCch
Confidence 689999999999999998889999999999999999999999999999999999999999999999999875544
No 77
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.46 E-value=1.5e-14 Score=107.21 Aligned_cols=81 Identities=33% Similarity=0.489 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhccCCCCCC
Q psy7780 236 KTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPEGL 315 (317)
Q Consensus 236 ~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~~~~~~~~ 315 (317)
++|.+||+.+++++++..++|+..+|..|+||||+||.++|++|++.|+++++..|+++||..|++++..+..+.....+
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~~~~~~~~~~~~ 80 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQVKTDNTVDKFDF 80 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTCC----------
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHHcCcCChHHHHh
Confidence 47999999999999888899999999999999999999999999999999999999999999999999765554444555
Q ss_pred C
Q psy7780 316 Y 316 (317)
Q Consensus 316 ~ 316 (317)
|
T Consensus 81 y 81 (82)
T 2dzn_B 81 Y 81 (82)
T ss_dssp -
T ss_pred h
Confidence 5
No 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.41 E-value=9.1e-14 Score=144.46 Aligned_cols=176 Identities=19% Similarity=0.266 Sum_probs=114.7
Q ss_pred hhHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhh------------hcCCchHHHHHHHHHHHhhCCceEee
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQK------------YLGDGPKLVRELFRVAEEHAPSIVFI 142 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~------------~~g~~~~~l~~~f~~a~~~~P~Ii~i 142 (317)
+++||+||||||||+ ++|+.+ +.+|+.++|+++... |+|..+ ...+....+...++||||
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~l 666 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILF 666 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC----------------CHHHHHHHCSSEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEE
Confidence 367999999999999 888888 789999999876543 223222 123344444555689999
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcc-cccccchhhhcccccccCCCCeEEEEEcCCC----------
Q psy7780 143 DEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR-VQNRRLSEVYSSLTLIYLPGDVKVIMATNRI---------- 211 (317)
Q Consensus 143 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~-~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~---------- 211 (317)
||+|.+. .+++..|.+++ +.-.-. ..+. +.. -.++++|+|||..
T Consensus 667 DEi~~l~-----------~~~~~~Ll~~l---~~~~~~~~~g~----------~vd-~~~~iiI~tsn~~~~~~~~~~~~ 721 (854)
T 1qvr_A 667 DEIEKAH-----------PDVFNILLQIL---DDGRLTDSHGR----------TVD-FRNTVIILTSNLGSPLILEGLQK 721 (854)
T ss_dssp SSGGGSC-----------HHHHHHHHHHH---TTTEECCSSSC----------CEE-CTTEEEEEECCTTHHHHHHHHHT
T ss_pred ecccccC-----------HHHHHHHHHHh---ccCceECCCCC----------Eec-cCCeEEEEecCcChHHHhhhccc
Confidence 9999763 23344444444 422100 0000 000 0478899999972
Q ss_pred ----------------CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCC---------CCC-cCCCHHHHHHhCC
Q psy7780 212 ----------------ETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM---------TLA-EDVNLQELIMAKD 265 (317)
Q Consensus 212 ----------------~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~---------~~~-~~~~~~~ia~~t~ 265 (317)
..+.|+|+. ||+..+.|++|+.+++..|++.++.+. .+. ++..+..++....
T Consensus 722 ~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~ 799 (854)
T 1qvr_A 722 GWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGY 799 (854)
T ss_dssp TCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCC
Confidence 346778888 999999999999999999998887632 111 2223455666544
Q ss_pred --CCCHHHHHHHHHHHHHHHHH
Q psy7780 266 --DLSGADIKAICTEAGLMALR 285 (317)
Q Consensus 266 --g~s~~dl~~l~~~A~~~a~~ 285 (317)
.++.++|+++++++...++.
T Consensus 800 ~~~gn~R~L~~~i~~~~~~~~~ 821 (854)
T 1qvr_A 800 DPVFGARPLRRVIQRELETPLA 821 (854)
T ss_dssp BTTTBTSTHHHHHHHHTHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHH
Confidence 56889999999988776654
No 79
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.37 E-value=1.2e-12 Score=121.78 Aligned_cols=108 Identities=13% Similarity=0.195 Sum_probs=79.6
Q ss_pred CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCC
Q psy7780 136 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215 (317)
Q Consensus 136 ~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld 215 (317)
.|.||+|||++.+-. ..+..+..++++. . .+..+|.+||.++.+.
T Consensus 134 ~~~vlilDE~~~L~~-----------~~~~~L~~~le~~---~---------------------~~~~~Il~t~~~~~l~ 178 (354)
T 1sxj_E 134 RYKCVIINEANSLTK-----------DAQAALRRTMEKY---S---------------------KNIRLIMVCDSMSPII 178 (354)
T ss_dssp CCEEEEEECTTSSCH-----------HHHHHHHHHHHHS---T---------------------TTEEEEEEESCSCSSC
T ss_pred CCeEEEEeCccccCH-----------HHHHHHHHHHHhh---c---------------------CCCEEEEEeCCHHHHH
Confidence 567999999998521 2244455555542 1 4567999999999999
Q ss_pred ccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-c-CCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Q psy7780 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-E-DVNLQELIMAKDDLSGADIKAICTEAGLM 282 (317)
Q Consensus 216 ~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~-~~~~~~ia~~t~g~s~~dl~~l~~~A~~~ 282 (317)
+++++ || ..+.|++|+.+++.++++..+.+.++. + +..+..+++.+.| +.+++.++++.+...
T Consensus 179 ~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 179 APIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNG-NLRVSLLMLESMALN 243 (354)
T ss_dssp HHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHT
T ss_pred HHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 99999 99 689999999999999999887654433 2 3446778887766 677777777766554
No 80
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.37 E-value=3.6e-13 Score=125.30 Aligned_cols=173 Identities=14% Similarity=0.187 Sum_probs=107.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCC-----ceEEEEechhhhhhhcCCchHHHHHHHHHHHh------hCCceEeeccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS-----ATFLRVVGSELIQKYLGDGPKLVRELFRVAEE------HAPSIVFIDEIDA 147 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~-----~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~------~~P~Ii~iDEiD~ 147 (317)
+++|+||||||||+ ++|+.+. ..+..+++++. .+...+++.+....+ ..+.|++|||+|.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~------~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~ 121 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD------RGIDVVRNQIKDFASTRQIFSKGFKLIILDEADA 121 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC------CSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc------ccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCC
Confidence 37899999999999 7777752 35777776642 123344444433321 1257999999998
Q ss_pred ccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeE
Q psy7780 148 VGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRK 227 (317)
Q Consensus 148 l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~ 227 (317)
+... .+..|..++++ .. ....+|++||.++.+.+++++ ||. .
T Consensus 122 l~~~-----------~~~~L~~~le~---~~---------------------~~~~~il~~n~~~~i~~~i~s--R~~-~ 163 (340)
T 1sxj_C 122 MTNA-----------AQNALRRVIER---YT---------------------KNTRFCVLANYAHKLTPALLS--QCT-R 163 (340)
T ss_dssp SCHH-----------HHHHHHHHHHH---TT---------------------TTEEEEEEESCGGGSCHHHHT--TSE-E
T ss_pred CCHH-----------HHHHHHHHHhc---CC---------------------CCeEEEEEecCccccchhHHh--hce-e
Confidence 8422 23445455544 21 456688889999999999999 996 7
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHH
Q psy7780 228 IEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKS 299 (317)
Q Consensus 228 I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~a 299 (317)
+.|++++.++..+++...+....+. ++.....++..+.| ..+.+.++++.+...+...+...++.+++.++
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G-~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~ 235 (340)
T 1sxj_C 164 FRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG-DMRRVLNVLQSCKATLDNPDEDEISDDVIYEC 235 (340)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT-CHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHH
T ss_pred EeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCcccccccHHHHHHH
Confidence 8999999999999998887443322 12234556665544 34444444443322221111235777766544
No 81
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.37 E-value=1.3e-12 Score=117.22 Aligned_cols=184 Identities=16% Similarity=0.182 Sum_probs=106.4
Q ss_pred hhHHHhhhcCCCchh---hhhhcCC---ceEEEEechhhhhh-----hcCCchHH-------HHHHHHHHHhhCCceEee
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTS---ATFLRVVGSELIQK-----YLGDGPKL-------VRELFRVAEEHAPSIVFI 142 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~---~~~~~v~~s~l~~~-----~~g~~~~~-------l~~~f~~a~~~~P~Ii~i 142 (317)
+++||+|+||||||+ ++++.+. .+|+.++|+.+... ..|..... ....|..+ .+++|||
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~l 106 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFL 106 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC---------CCCCHHHHT---TTSEEEE
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccccccccccccchhhhc---CCcEEEE
Confidence 478999999999999 7887764 68999999875321 12211100 01122222 3579999
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-------CCCC
Q psy7780 143 DEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-------ETLD 215 (317)
Q Consensus 143 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-------~~Ld 215 (317)
||+|.+.. +.+..|..+++.-. +.... .....+.++.+|+|||.+ ..++
T Consensus 107 DEi~~l~~-----------~~q~~Ll~~l~~~~-~~~~g------------~~~~~~~~~~iI~atn~~~~~~~~~~~~~ 162 (265)
T 2bjv_A 107 DELATAPM-----------MVQEKLLRVIEYGE-LERVG------------GSQPLQVNVRLVCATNADLPAMVNEGTFR 162 (265)
T ss_dssp ESGGGSCH-----------HHHHHHHHHHHHCE-ECCCC------------C--CEECCCEEEEEESSCHHHHHHHTSSC
T ss_pred echHhcCH-----------HHHHHHHHHHHhCC-eecCC------------CcccccCCeEEEEecCcCHHHHHHcCCcc
Confidence 99998843 23455555555421 10000 000011568899999984 2478
Q ss_pred ccccCCCcce-eEEEeCCCCH--HHHHHHHHHHhcC----CCCCc--CCC---HHHHHHhCCCCCHHHHHHHHHHHHHHH
Q psy7780 216 PALIRPGRID-RKIEFPLPDE--KTKRRIFNIHTSR----MTLAE--DVN---LQELIMAKDDLSGADIKAICTEAGLMA 283 (317)
Q Consensus 216 ~al~rpgRf~-~~I~~~~P~~--~~r~~Il~~~l~~----~~~~~--~~~---~~~ia~~t~g~s~~dl~~l~~~A~~~a 283 (317)
++|.+ ||. ..|.+|+.+. ++...+++.++++ ..... ..+ +..+....-.-+.+++.++++.+...+
T Consensus 163 ~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 163 ADLLD--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp HHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 89998 996 4567776643 5566666555432 22211 222 233433332336778889998877654
Q ss_pred HHhcCCCcCHHHH
Q psy7780 284 LRERRMKVTNEDF 296 (317)
Q Consensus 284 ~~~~~~~it~~d~ 296 (317)
....|+.+|+
T Consensus 241 ---~~~~i~~~~l 250 (265)
T 2bjv_A 241 ---GTSDYPLDDI 250 (265)
T ss_dssp ---CCSSSCBCCC
T ss_pred ---CCCcCcHHHc
Confidence 2345665555
No 82
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.32 E-value=7.8e-12 Score=118.29 Aligned_cols=196 Identities=13% Similarity=0.107 Sum_probs=124.7
Q ss_pred hHHH--hhhcCCCchh---hhhhcC---------CceEEEEechh------hhhh---hc-------CCch-HHHHHHHH
Q psy7780 82 SELI--QKYLGDGPKL---AVANQT---------SATFLRVVGSE------LIQK---YL-------GDGP-KLVRELFR 130 (317)
Q Consensus 82 ~~Ll--~G~pGtGKT~---aiA~~~---------~~~~~~v~~s~------l~~~---~~-------g~~~-~~l~~~f~ 130 (317)
..++ +|+||+|||+ ++++++ +..++.++|.. +... .. |... ..+..+.+
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~ 131 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVD 131 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHH
Confidence 5678 9999999999 666654 56788888743 1111 11 1111 22333333
Q ss_pred HHH-hhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcC
Q psy7780 131 VAE-EHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATN 209 (317)
Q Consensus 131 ~a~-~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN 209 (317)
... ...|.+|+|||+|.+...+. ... ..+..++..++...... ...++.+|++||
T Consensus 132 ~l~~~~~~~llvlDe~~~l~~~~~-----~~~---~~l~~l~~~~~~~~~~~----------------~~~~v~lI~~~~ 187 (412)
T 1w5s_A 132 NLYVENHYLLVILDEFQSMLSSPR-----IAA---EDLYTLLRVHEEIPSRD----------------GVNRIGFLLVAS 187 (412)
T ss_dssp HHHHHTCEEEEEEESTHHHHSCTT-----SCH---HHHHHHHTHHHHSCCTT----------------SCCBEEEEEEEE
T ss_pred HHHhcCCeEEEEEeCHHHHhhccC-----cch---HHHHHHHHHHHhcccCC----------------CCceEEEEEEec
Confidence 332 24588999999999865320 112 23333333333221000 004688998988
Q ss_pred CCC---CCC---ccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCC---CCcCCCHHHHHHhCC------CCCHHHHHH
Q psy7780 210 RIE---TLD---PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMT---LAEDVNLQELIMAKD------DLSGADIKA 274 (317)
Q Consensus 210 ~~~---~Ld---~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~---~~~~~~~~~ia~~t~------g~s~~dl~~ 274 (317)
.++ .++ +.+.+ ||...+.+++++.++..++++..+.... ..++..+..++..+. | .++.+..
T Consensus 188 ~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G-~p~~~~~ 264 (412)
T 1w5s_A 188 DVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDG-SARRAIV 264 (412)
T ss_dssp ETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCC-CHHHHHH
T ss_pred cccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCC-cHHHHHH
Confidence 765 344 66777 6666699999999999999987754211 112223566777777 6 6888999
Q ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHH
Q psy7780 275 ICTEAGLMALRERRMKVTNEDFKKSKESVL 304 (317)
Q Consensus 275 l~~~A~~~a~~~~~~~it~~d~~~al~~v~ 304 (317)
++..|...|..++...++.+++..++....
T Consensus 265 l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 265 ALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp HHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 999998888888888899999988887643
No 83
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.27 E-value=2.4e-11 Score=137.31 Aligned_cols=141 Identities=15% Similarity=0.236 Sum_probs=97.3
Q ss_pred hHHHhhhcCCCchh----hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHH---------------hhCCceEee
Q psy7780 82 SELIQKYLGDGPKL----AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAE---------------EHAPSIVFI 142 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~---------------~~~P~Ii~i 142 (317)
|+||+||||||||+ ++++..+..++.++++...+ ...+...++..- ...++||||
T Consensus 1269 ~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFi 1342 (2695)
T 4akg_A 1269 GIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFC 1342 (2695)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEEEe
Confidence 88999999999999 57777788999999876432 344555554331 122479999
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCcc
Q psy7780 143 DEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDPA 217 (317)
Q Consensus 143 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~a 217 (317)
||+|.....+. +.......+.++++. .++..... ...... .++.+|+|||++. .|+++
T Consensus 1343 DEinmp~~d~y-----g~q~~lelLRq~le~-gg~yd~~~----------~~~~~~-~~i~lIaA~Npp~~gGR~~l~~r 1405 (2695)
T 4akg_A 1343 DEINLPKLDKY-----GSQNVVLFLRQLMEK-QGFWKTPE----------NKWVTI-ERIHIVGACNPPTDPGRIPMSER 1405 (2695)
T ss_dssp ETTTCSCCCSS-----SCCHHHHHHHHHHHT-SSEECTTT----------CCEEEE-ESEEEEEEECCTTSTTCCCCCHH
T ss_pred ccccccccccc-----CchhHHHHHHHHHhc-CCEEEcCC----------CcEEEe-cCEEEEEecCCCccCCCccCChh
Confidence 99997443332 222345566666642 33322100 000001 4689999999995 79999
Q ss_pred ccCCCcceeEEEeCCCCHHHHHHHHHHHhcC
Q psy7780 218 LIRPGRIDRKIEFPLPDEKTKRRIFNIHTSR 248 (317)
Q Consensus 218 l~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~ 248 (317)
++| || ..++++.|+.+++..|++.+++.
T Consensus 1406 llR--rf-~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1406 FTR--HA-AILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp HHT--TE-EEEECCCCTTTHHHHHHHHHHHH
T ss_pred hhh--ee-eEEEeCCCCHHHHHHHHHHHHHH
Confidence 999 99 68999999999999999988753
No 84
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=99.25 E-value=6.1e-12 Score=97.87 Aligned_cols=69 Identities=32% Similarity=0.617 Sum_probs=56.0
Q ss_pred eEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCchhhhhcc
Q psy7780 2 SVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVAN 70 (317)
Q Consensus 2 ~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~ 70 (317)
.||+|.|++++++++|+++++++|++.+.++++++.|+||++|++|.+++.++++||.++|+.++.|+.
T Consensus 39 ~Vg~v~e~~d~~~~iVk~s~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~iLp~e~Dp~V~~M~v 107 (109)
T 2wg5_A 39 LVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEV 107 (109)
T ss_dssp EEEEEEEECTTSCEEEEETTSCEEEECBCTTSCTTTCCTTCEEEEETTTCCEEEEEC------------
T ss_pred eEEEEEEEecCCEEEEEeCCCCEEEEEcccccCHHHCCCCCEEEECCcceEeEEeCCCCcCccchheEe
Confidence 699999999999999999999999999999999999999999999999999999999999999998865
No 85
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.25 E-value=1e-12 Score=120.72 Aligned_cols=174 Identities=18% Similarity=0.206 Sum_probs=101.8
Q ss_pred hhHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhh-----hcCCch-------HHHHHHHHHHHhhCCceEee
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQK-----YLGDGP-------KLVRELFRVAEEHAPSIVFI 142 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~-----~~g~~~-------~~l~~~f~~a~~~~P~Ii~i 142 (317)
.++||+|+||||||+ ++++.. +.+|+.++|+.+... ..|... ......|+.|. +++|||
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~L 102 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEAD---GGTLFL 102 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHHT---TSEEEE
T ss_pred CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhcC---CCEEEE
Confidence 378999999999999 777744 679999999875331 122110 01223455443 479999
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-------CCCC
Q psy7780 143 DEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-------ETLD 215 (317)
Q Consensus 143 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-------~~Ld 215 (317)
||||.+.. ..+..|..+++... +... ......+.++.+|+|||+. ..++
T Consensus 103 DEi~~l~~-----------~~q~~Ll~~l~~~~-~~~~------------g~~~~~~~~~riI~atn~~l~~~v~~g~fr 158 (304)
T 1ojl_A 103 DEIGDISP-----------LMQVRLLRAIQERE-VQRV------------GSNQTISVDVRLIAATHRDLAEEVSAGRFR 158 (304)
T ss_dssp ESCTTCCH-----------HHHHHHHHHHHSSB-CCBT------------TBCCCCBCCCEEEEEESSCHHHHHHHTSSC
T ss_pred eccccCCH-----------HHHHHHHHHHhcCE-eeec------------CCcccccCCeEEEEecCccHHHHHHhCCcH
Confidence 99998843 23444555554321 1100 0001112568899999985 2356
Q ss_pred ccccCCCcce-eEEEeCCCC--HHHHHHHHHHHhcCC----CCC----cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q psy7780 216 PALIRPGRID-RKIEFPLPD--EKTKRRIFNIHTSRM----TLA----EDVNLQELIMAKDDLSGADIKAICTEAGLMA 283 (317)
Q Consensus 216 ~al~rpgRf~-~~I~~~~P~--~~~r~~Il~~~l~~~----~~~----~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a 283 (317)
+.|.. ||. ..|.+|++. .++...+++.++.+. +.. ++..+..+....-.-+.+++.++++.|...+
T Consensus 159 ~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 159 QDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp HHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHC
T ss_pred HHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhC
Confidence 77777 874 446666665 455666776665432 111 1122344444442236788889998887654
No 86
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.24 E-value=1e-11 Score=124.32 Aligned_cols=151 Identities=19% Similarity=0.290 Sum_probs=94.1
Q ss_pred CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC--CC
Q psy7780 136 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI--ET 213 (317)
Q Consensus 136 ~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~--~~ 213 (317)
.+.++||||++.+. ...+..|..+|+.-. +........ .....+.....|.++.||+|||+. +.
T Consensus 201 ~~gvL~LDEi~~l~-----------~~~q~~Ll~~Le~~~-~~~~g~~~~--~~~~~l~~~~~p~~~~vI~atn~~~~~~ 266 (604)
T 3k1j_A 201 HKGVLFIDEIATLS-----------LKMQQSLLTAMQEKK-FPITGQSEM--SSGAMVRTEPVPCDFVLVAAGNLDTVDK 266 (604)
T ss_dssp TTSEEEETTGGGSC-----------HHHHHHHHHHHHHSE-ECCBCSCTT--SGGGGCBCSCEECCCEEEEEECHHHHHH
T ss_pred CCCEEEEechhhCC-----------HHHHHHHHHHHHcCc-EEecccccc--cccccCCCCccceeEEEEEecCHHHHhh
Confidence 46799999999873 234555666655311 000000000 000111123334688999999986 67
Q ss_pred CCccccCCCcce---eEEEeCCC---CHHHHHHHHHHHhcCC------CCCcCCCHHHHHHhC---CC------CCHHHH
Q psy7780 214 LDPALIRPGRID---RKIEFPLP---DEKTKRRIFNIHTSRM------TLAEDVNLQELIMAK---DD------LSGADI 272 (317)
Q Consensus 214 Ld~al~rpgRf~---~~I~~~~P---~~~~r~~Il~~~l~~~------~~~~~~~~~~ia~~t---~g------~s~~dl 272 (317)
++++|++ ||+ ..+.|+.. ..+....+++.+.+.. ..-++..+..+++.. .| .+.+++
T Consensus 267 l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l 344 (604)
T 3k1j_A 267 MHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDL 344 (604)
T ss_dssp SCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHH
T ss_pred cCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHH
Confidence 9999999 996 56666542 4555666665443221 111222344454432 45 379999
Q ss_pred HHHHHHHHHHHHHhcCCCcCHHHHHHHHHH
Q psy7780 273 KAICTEAGLMALRERRMKVTNEDFKKSKES 302 (317)
Q Consensus 273 ~~l~~~A~~~a~~~~~~~it~~d~~~al~~ 302 (317)
.++++.|...|..+++..|+.+|+.+|++.
T Consensus 345 ~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 345 GGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 999999999998888999999999999864
No 87
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.23 E-value=2.2e-11 Score=113.15 Aligned_cols=150 Identities=19% Similarity=0.171 Sum_probs=101.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc------------------------eEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA------------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~------------------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
.+||+||||+|||+ ++|+.+.+ .++.+++.+- ....+...++++++.+..
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~---~~~~~i~~ir~l~~~~~~ 102 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG---KNTLGVDAVREVTEKLNE 102 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT---CSSBCHHHHHHHHHHTTS
T ss_pred eEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc---CCCCCHHHHHHHHHHHhh
Confidence 37899999999999 77766543 2444443210 011234567888877653
Q ss_pred h----CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCC
Q psy7780 135 H----APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR 210 (317)
Q Consensus 135 ~----~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~ 210 (317)
. .+.|++|||+|.+... ..+.|+..++.-. .++++|.+||+
T Consensus 103 ~~~~~~~kvviIdead~l~~~--------------a~naLLk~lEep~---------------------~~~~~Il~t~~ 147 (334)
T 1a5t_A 103 HARLGGAKVVWVTDAALLTDA--------------AANALLKTLEEPP---------------------AETWFFLATRE 147 (334)
T ss_dssp CCTTSSCEEEEESCGGGBCHH--------------HHHHHHHHHTSCC---------------------TTEEEEEEESC
T ss_pred ccccCCcEEEEECchhhcCHH--------------HHHHHHHHhcCCC---------------------CCeEEEEEeCC
Confidence 2 3579999999998421 2234555554321 56889999999
Q ss_pred CCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHH
Q psy7780 211 IETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICT 277 (317)
Q Consensus 211 ~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~ 277 (317)
++.+++++++ |+. .+.|++|+.++..++++... .++ +..+..++..+.| +++.+.++++
T Consensus 148 ~~~l~~ti~S--Rc~-~~~~~~~~~~~~~~~L~~~~---~~~-~~~~~~l~~~s~G-~~r~a~~~l~ 206 (334)
T 1a5t_A 148 PERLLATLRS--RCR-LHYLAPPPEQYAVTWLSREV---TMS-QDALLAALRLSAG-SPGAALALFQ 206 (334)
T ss_dssp GGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHC---CCC-HHHHHHHHHHTTT-CHHHHHHTTS
T ss_pred hHhCcHHHhh--cce-eeeCCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCC-CHHHHHHHhc
Confidence 9999999999 995 79999999999999998775 222 2234567777666 5555555544
No 88
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.19 E-value=5.7e-12 Score=102.81 Aligned_cols=105 Identities=14% Similarity=0.228 Sum_probs=73.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
+++++|+||||||+ +++++.+ +|+.++|+++...+ ...+|+.|. +++|||||+|.+...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~a~---~~~l~lDei~~l~~~------- 90 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQKAE---GGVLYVGDIAQYSRN------- 90 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHHHTT---TSEEEEEECTTCCHH-------
T ss_pred cEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHHhCC---CCeEEEeChHHCCHH-------
Confidence 68999999999999 8888887 99999999876543 455666554 479999999988432
Q ss_pred chhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC-CC----CCccccCCCcc-eeEEEeCC
Q psy7780 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-ET----LDPALIRPGRI-DRKIEFPL 232 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-~~----Ld~al~rpgRf-~~~I~~~~ 232 (317)
.+..+..+++... . .++.+|+|||++ +. +++.|.. || ...|++|+
T Consensus 91 ----~q~~Ll~~l~~~~----~-------------------~~~~iI~~tn~~~~~~~~~~~~~L~~--rl~~~~i~lPp 141 (143)
T 3co5_A 91 ----IQTGITFIIGKAE----R-------------------CRVRVIASCSYAAGSDGISCEEKLAG--LFSESVVRIPP 141 (143)
T ss_dssp ----HHHHHHHHHHHHT----T-------------------TTCEEEEEEEECTTTC--CHHHHHHH--HSSSEEEEECC
T ss_pred ----HHHHHHHHHHhCC----C-------------------CCEEEEEecCCCHHHHHhCccHHHHH--HhcCcEEeCCC
Confidence 3455556665532 1 567799999874 33 3344444 54 34677765
Q ss_pred C
Q psy7780 233 P 233 (317)
Q Consensus 233 P 233 (317)
.
T Consensus 142 L 142 (143)
T 3co5_A 142 L 142 (143)
T ss_dssp C
T ss_pred C
Confidence 3
No 89
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.12 E-value=9.6e-12 Score=135.33 Aligned_cols=110 Identities=16% Similarity=0.130 Sum_probs=83.6
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechh----hh--------hhhcCC----chHHHHHHHHHHHhhCCce
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSE----LI--------QKYLGD----GPKLVRELFRVAEEHAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~----l~--------~~~~g~----~~~~l~~~f~~a~~~~P~I 139 (317)
++|+|||||||||+ ++|.+. +-+-+.|+..+ +. ++|+++ +++.++.+|..|++.+||+
T Consensus 1084 ~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~ 1163 (1706)
T 3cmw_A 1084 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 1163 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred EEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeE
Confidence 48999999999999 556555 33444444443 33 677888 8999999999999999999
Q ss_pred EeecccccccccccC---CCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC
Q psy7780 140 VFIDEIDAVGTKRYD---SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI 211 (317)
Q Consensus 140 i~iDEiD~l~~~r~~---~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~ 211 (317)
||+|++|+|++.++. .++....-..|.++++|.++++.... .+|+|| +||+.
T Consensus 1164 i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~-------------------~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1164 IVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ-------------------SNTLLI-FINQI 1218 (1706)
T ss_dssp EEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHH-------------------TTCEEE-EEECE
T ss_pred EEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhcc-------------------CCeEEE-Eeccc
Confidence 999999999999532 22212244567799999999997766 677777 77774
No 90
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.12 E-value=1.6e-11 Score=100.35 Aligned_cols=105 Identities=9% Similarity=0.039 Sum_probs=70.5
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~ 155 (317)
|+|++|+||||||+ ++++.. +.+|+ ++|+.+.+. ......|+.|. .++|||||+|.+...
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a~---~g~l~ldei~~l~~~---- 91 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALAQ---GGTLVLSHPEHLTRE---- 91 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHHT---TSCEEEECGGGSCHH----
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHcC---CcEEEEcChHHCCHH----
Confidence 78999999999999 788776 77899 999886543 34455666553 479999999988432
Q ss_pred CCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-------CCCccccCCCcce-eE
Q psy7780 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-------TLDPALIRPGRID-RK 227 (317)
Q Consensus 156 ~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-------~Ld~al~rpgRf~-~~ 227 (317)
.+..+..++ .... .++.+|+|||++- .+.+.+.. |+. ..
T Consensus 92 -------~q~~Ll~~l---~~~~---------------------~~~~~I~~t~~~~~~~~~~~~~~~~L~~--rl~~~~ 138 (145)
T 3n70_A 92 -------QQYHLVQLQ---SQEH---------------------RPFRLIGIGDTSLVELAASNHIIAELYY--CFAMTQ 138 (145)
T ss_dssp -------HHHHHHHHH---HSSS---------------------CSSCEEEEESSCHHHHHHHSCCCHHHHH--HHHHHE
T ss_pred -------HHHHHHHHH---hhcC---------------------CCEEEEEECCcCHHHHHHcCCCCHHHHH--HhcCCE
Confidence 344444444 2211 4567999999742 34455554 542 35
Q ss_pred EEeCCC
Q psy7780 228 IEFPLP 233 (317)
Q Consensus 228 I~~~~P 233 (317)
|++|+.
T Consensus 139 i~lPpL 144 (145)
T 3n70_A 139 IACLPL 144 (145)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 666653
No 91
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=99.10 E-value=1e-10 Score=86.70 Aligned_cols=59 Identities=34% Similarity=0.592 Sum_probs=56.2
Q ss_pred CeEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccC
Q psy7780 1 MSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSD 59 (317)
Q Consensus 1 ~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 59 (317)
+.||+|+|.+|+++++|+++++++|++.+.++++++.|+||++|++|.+++.++++||.
T Consensus 19 ~~vG~v~e~~dd~~~iVkss~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~vLp~ 77 (85)
T 3h43_A 19 LIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPE 77 (85)
T ss_dssp EEEEEEEEEEETTEEEEEETTSSEEEEEBCTTSCGGGCCTTCEEEECTTTCCEEEECC-
T ss_pred ceEEEEEEEcCCCEEEEEeCCCCeEEEEecCccCHHHCCCCCEEEECCcccCHhhhhhh
Confidence 36999999999999999999999999999999999999999999999999999999985
No 92
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.03 E-value=3.4e-10 Score=104.01 Aligned_cols=120 Identities=14% Similarity=0.130 Sum_probs=88.2
Q ss_pred hHHHhhhcCCCchh---hhhhcC------CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhC----CceEeecccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT------SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA----PSIVFIDEIDAV 148 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~------~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~----P~Ii~iDEiD~l 148 (317)
.+||+||||+|||+ ++|+.+ ...++.+++++ ...+...++++++.+.... ..|++|||+|.+
T Consensus 20 ~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~-----~~~~id~ir~li~~~~~~p~~~~~kvviIdead~l 94 (305)
T 2gno_A 20 SILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG-----ENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERM 94 (305)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS-----SCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc-----CCCCHHHHHHHHHHHhhccccCCceEEEeccHHHh
Confidence 47899999999998 777652 34677777642 0133456888888886432 359999999998
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEE
Q psy7780 149 GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKI 228 (317)
Q Consensus 149 ~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I 228 (317)
... .++. |+..++... .++++|.+||.++.|.|++++ | .+
T Consensus 95 t~~-----------a~na---LLk~LEep~---------------------~~t~fIl~t~~~~kl~~tI~S--R---~~ 134 (305)
T 2gno_A 95 TQQ-----------AANA---FLKALEEPP---------------------EYAVIVLNTRRWHYLLPTIKS--R---VF 134 (305)
T ss_dssp CHH-----------HHHH---THHHHHSCC---------------------TTEEEEEEESCGGGSCHHHHT--T---SE
T ss_pred CHH-----------HHHH---HHHHHhCCC---------------------CCeEEEEEECChHhChHHHHc--e---eE
Confidence 422 2333 444444322 567888888999999999999 8 89
Q ss_pred EeCCCCHHHHHHHHHHHh
Q psy7780 229 EFPLPDEKTKRRIFNIHT 246 (317)
Q Consensus 229 ~~~~P~~~~r~~Il~~~l 246 (317)
+|++|+.++..++++..+
T Consensus 135 ~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 135 RVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEECCCCHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHh
Confidence 999999999999998776
No 93
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.81 E-value=3e-09 Score=91.69 Aligned_cols=124 Identities=18% Similarity=0.151 Sum_probs=75.4
Q ss_pred HHHhhhcCCCchh-hhh----h------cCC-ceEEEEechhhhhhhc----------CCchH--HHHHHHHHH--HhhC
Q psy7780 83 ELIQKYLGDGPKL-AVA----N------QTS-ATFLRVVGSELIQKYL----------GDGPK--LVRELFRVA--EEHA 136 (317)
Q Consensus 83 ~Ll~G~pGtGKT~-aiA----~------~~~-~~~~~v~~s~l~~~~~----------g~~~~--~l~~~f~~a--~~~~ 136 (317)
.|++|+||+|||+ +++ . ..| .+++..++.+|.-.+. ..... ....+++.+ ....
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPENI 87 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGGT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccccC
Confidence 5789999999999 333 1 345 6666666665532221 11110 112333331 2344
Q ss_pred CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCc
Q psy7780 137 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDP 216 (317)
Q Consensus 137 P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~ 216 (317)
++||+|||++.+.+.+... ... . .++..+..-.. ..+-+|.+|+.++.|+.
T Consensus 88 ~~vliIDEAq~l~~~~~~~-~e~----~----rll~~l~~~r~--------------------~~~~iil~tq~~~~l~~ 138 (199)
T 2r2a_A 88 GSIVIVDEAQDVWPARSAG-SKI----P----ENVQWLNTHRH--------------------QGIDIFVLTQGPKLLDQ 138 (199)
T ss_dssp TCEEEETTGGGTSBCCCTT-CCC----C----HHHHGGGGTTT--------------------TTCEEEEEESCGGGBCH
T ss_pred ceEEEEEChhhhccCcccc-chh----H----HHHHHHHhcCc--------------------CCeEEEEECCCHHHHhH
Confidence 6899999999998765321 111 1 23333332211 34557888888999999
Q ss_pred cccCCCcceeEEEeCCCCHHH
Q psy7780 217 ALIRPGRIDRKIEFPLPDEKT 237 (317)
Q Consensus 217 al~rpgRf~~~I~~~~P~~~~ 237 (317)
++++ |++..++++.|....
T Consensus 139 ~lr~--ri~~~~~l~~~~~~~ 157 (199)
T 2r2a_A 139 NLRT--LVRKHYHIASNKMGM 157 (199)
T ss_dssp HHHT--TEEEEEEEEECSSCC
T ss_pred HHHH--HhheEEEEcCcccCc
Confidence 9999 999999998865443
No 94
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.74 E-value=8.9e-08 Score=108.61 Aligned_cols=174 Identities=11% Similarity=0.101 Sum_probs=113.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG 158 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~ 158 (317)
|.+++||||||||. ++|+.+|.+++.++|++-++ ...+..+|.-|.+.. +.++|||++.+-.
T Consensus 647 ~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~~~-------- 711 (2695)
T 4akg_A 647 GGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRLDE-------- 711 (2695)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSSCH--------
T ss_pred CCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhcCh--------
Confidence 56789999999999 99999999999999987543 456778888776654 8999999998632
Q ss_pred chhHHHHHHHHHHHHhcC-CCcccccccchhhhcccccccCCCCeEEEEEcC----CCCCCCccccCCCcceeEEEeCCC
Q psy7780 159 GEREIQRTMLELLNQLDG-FDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATN----RIETLDPALIRPGRIDRKIEFPLP 233 (317)
Q Consensus 159 ~~~~~~~~l~~ll~~ld~-~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN----~~~~Ld~al~rpgRf~~~I~~~~P 233 (317)
++.+++.+.+..+.. +... .......+....+..++.|++|.| ....||+++++ || +.+.+..|
T Consensus 712 ---evLs~l~~~l~~i~~al~~~-----~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~P 780 (2695)
T 4akg_A 712 ---KVLSAVSANIQQIQNGLQVG-----KSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSP 780 (2695)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHT-----CSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCC
T ss_pred ---HHHHHHHHHHHHHHHHHHcC-----CcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-EEEEeeCC
Confidence 345555433332211 1000 001122334455567788999999 34579999999 99 58999999
Q ss_pred CHHHHHHHHHHHhcCCCCCcC-----CCHHH-HHHhC-----CCCCHHHHHHHHHHHHHH
Q psy7780 234 DEKTKRRIFNIHTSRMTLAED-----VNLQE-LIMAK-----DDLSGADIKAICTEAGLM 282 (317)
Q Consensus 234 ~~~~r~~Il~~~l~~~~~~~~-----~~~~~-ia~~t-----~g~s~~dl~~l~~~A~~~ 282 (317)
+.+...+|+-.... ...... +.+-. +.+.. ..|.-+.++.+++.|+..
T Consensus 781 d~~~i~ei~l~s~G-f~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~l 839 (2695)
T 4akg_A 781 QSGTIAEMILQIMG-FEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSPL 839 (2695)
T ss_dssp CHHHHHHHHHHHHH-CSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHHh
Confidence 99998888543221 110100 00111 11122 247889999998877654
No 95
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.71 E-value=1.3e-08 Score=97.73 Aligned_cols=193 Identities=15% Similarity=0.067 Sum_probs=110.4
Q ss_pred hHHHhhhcCCCchh---hh-hhcCCceEEEE-ech---hhhhhhcCC--chHHHHHHHHHHHhhCCceEeeccccccccc
Q psy7780 82 SELIQKYLGDGPKL---AV-ANQTSATFLRV-VGS---ELIQKYLGD--GPKLVRELFRVAEEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---ai-A~~~~~~~~~v-~~s---~l~~~~~g~--~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~ 151 (317)
++|+.|+||| ||+ ++ ++-+....+.. .++ .+.....+. ..-.- -.+..|.. .|+|+|||+.+-+
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~tG~~~~~-G~l~LAdg---Gvl~lDEIn~~~~- 314 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKEDRGWALRA-GAAVLADG---GILAVDHLEGAPE- 314 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEESSSEEEEE-CHHHHTTT---SEEEEECCTTCCH-
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcCCCcccCC-CeeEEcCC---CeeehHhhhhCCH-
Confidence 5899999999 999 77 66554433221 111 121110000 00000 01222322 5999999998732
Q ss_pred ccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----------CCCccccC
Q psy7780 152 RYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----------TLDPALIR 220 (317)
Q Consensus 152 r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----------~Ld~al~r 220 (317)
..+..|.+.+++-. +++.+. .+|.++.||+|+|..+ .|++++++
T Consensus 315 ----------~~qsaLlEaMEe~~-------------VtI~G~--~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD 369 (506)
T 3f8t_A 315 ----------PHRWALMEAMDKGT-------------VTVDGI--ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS 369 (506)
T ss_dssp ----------HHHHHHHHHHHHSE-------------EEETTE--EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT
T ss_pred ----------HHHHHHHHHHhCCc-------------EEECCE--EcCCCeEEEEEeCcccccCCCCCccccCCChHHhh
Confidence 23555666665411 111111 4558899999999875 78999999
Q ss_pred CCcceeE-EEeCCCCHHHH---------HHHHHHH---hc--C--CCCCcCCCHHHHH-----------H------hCCC
Q psy7780 221 PGRIDRK-IEFPLPDEKTK---------RRIFNIH---TS--R--MTLAEDVNLQELI-----------M------AKDD 266 (317)
Q Consensus 221 pgRf~~~-I~~~~P~~~~r---------~~Il~~~---l~--~--~~~~~~~~~~~ia-----------~------~t~g 266 (317)
|||.. +.+..|+.+.- .+.++.+ .+ . ..+.++ ..+.+. . ..-|
T Consensus 370 --RFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~e-a~~yI~~~y~~tR~~~~~~~~~~~~~~g 446 (506)
T 3f8t_A 370 --HFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEE-ARKRLEHWYETRREEVEERLGMGLPTLP 446 (506)
T ss_dssp --TCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHH-HHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred --heeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHH-HHHHHHHHHHHHhcCccccccccccccc
Confidence 99854 34555654331 1122222 12 1 111111 011111 0 2458
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhc
Q psy7780 267 LSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKK 308 (317)
Q Consensus 267 ~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~ 308 (317)
.|++.+..+++-|...|.-+.+..|+.+|+.+|++-+...-+
T Consensus 447 iSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl~ 488 (506)
T 3f8t_A 447 VTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYLE 488 (506)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999987765443
No 96
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.68 E-value=2.6e-09 Score=98.25 Aligned_cols=113 Identities=18% Similarity=0.222 Sum_probs=68.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCC--ceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS--ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSN 156 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~--~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~ 156 (317)
..+++||||||||+ ++|.+.+ +.|+.+...+.++.+..+.+..++.+++.+.+.. +|+||+++.+.....+..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~s 202 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGNT 202 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-------
T ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccccccccc
Confidence 45899999999999 5555443 4466663344444444555666777777776654 999999999966543211
Q ss_pred CCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccc
Q psy7780 157 SGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPAL 218 (317)
Q Consensus 157 ~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al 218 (317)
.. ....+.+.+++..++++... .++.+|++|| +...|+++
T Consensus 203 ~~--G~v~~~lrqlL~~L~~~~k~-------------------~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 203 TS--GGISRGAFDLLSDIGAMAAS-------------------RGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ------CCHHHHHHHHHHHHHHHH-------------------HTCEEEEECC-CSSCSSSH
T ss_pred cc--chHHHHHHHHHHHHHHHHhh-------------------CCCEEEEEeC-CcccchhH
Confidence 11 11234455666666555433 4577888888 56666664
No 97
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.62 E-value=2.5e-07 Score=85.05 Aligned_cols=162 Identities=12% Similarity=0.104 Sum_probs=97.1
Q ss_pred hhHHHhhhcCCCchh---hhhhcCCceEEEEechhh-----------hhh-----------------hcCC---------
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTSATFLRVVGSEL-----------IQK-----------------YLGD--------- 120 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l-----------~~~-----------------~~g~--------- 120 (317)
+..+++|++|+|||+ .++++.+..++.+++... ... ..+.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~ 110 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGN 110 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSS
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecce
Confidence 357899999999999 677776666777776532 000 0000
Q ss_pred ---------chHHHHHHHHHHHhh--CCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhh
Q psy7780 121 ---------GPKLVRELFRVAEEH--APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEV 189 (317)
Q Consensus 121 ---------~~~~l~~~f~~a~~~--~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~ 189 (317)
....+..+++...+. .|.+|+|||++.+.... ..+....+..+.+..
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~-------~~~~~~~l~~~~~~~--------------- 168 (357)
T 2fna_A 111 EIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR-------GVNLLPALAYAYDNL--------------- 168 (357)
T ss_dssp SEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT-------TCCCHHHHHHHHHHC---------------
T ss_pred EEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC-------chhHHHHHHHHHHcC---------------
Confidence 012455666655543 38999999999986421 011223333333321
Q ss_pred hcccccccCCCCeEEEEEcCCCCCCC---------ccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHH
Q psy7780 190 YSSLTLIYLPGDVKVIMATNRIETLD---------PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQEL 260 (317)
Q Consensus 190 ~~~~~~~~~~~~v~vI~tTN~~~~Ld---------~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~i 260 (317)
.++.+|+|++....+. ..+. ||+...+.+++.+.++..++++..+...+...+ +...+
T Consensus 169 ----------~~~~~i~~g~~~~~l~~~l~~~~~~~~l~--~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~~~~i 235 (357)
T 2fna_A 169 ----------KRIKFIMSGSEMGLLYDYLRVEDPESPLF--GRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-DYEVV 235 (357)
T ss_dssp ----------TTEEEEEEESSHHHHHHHTTTTCTTSTTT--TCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-CHHHH
T ss_pred ----------CCeEEEEEcCchHHHHHHHhccCCCCccc--cCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-cHHHH
Confidence 2455777766432111 2232 366678999999999999999887653222222 24778
Q ss_pred HHhCCCCCHHHHHHHHHH
Q psy7780 261 IMAKDDLSGADIKAICTE 278 (317)
Q Consensus 261 a~~t~g~s~~dl~~l~~~ 278 (317)
...|.|+ |.-+..++..
T Consensus 236 ~~~t~G~-P~~l~~~~~~ 252 (357)
T 2fna_A 236 YEKIGGI-PGWLTYFGFI 252 (357)
T ss_dssp HHHHCSC-HHHHHHHHHH
T ss_pred HHHhCCC-HHHHHHHHHH
Confidence 8888884 5566665543
No 98
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.57 E-value=1.4e-07 Score=91.16 Aligned_cols=131 Identities=16% Similarity=0.189 Sum_probs=95.6
Q ss_pred CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEE---------
Q psy7780 137 PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMA--------- 207 (317)
Q Consensus 137 P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~t--------- 207 (317)
|.|+||||+|.+.. ...+.|+..++... .++++++|
T Consensus 296 ~~VliIDEa~~l~~--------------~a~~aLlk~lEe~~---------------------~~~~il~tn~~~~~i~~ 340 (456)
T 2c9o_A 296 PGVLFVDEVHMLDI--------------ECFTYLHRALESSI---------------------APIVIFASNRGNCVIRG 340 (456)
T ss_dssp ECEEEEESGGGCBH--------------HHHHHHHHHTTSTT---------------------CCEEEEEECCSEEECBT
T ss_pred ceEEEEechhhcCH--------------HHHHHHHHHhhccC---------------------CCEEEEecCCccccccc
Confidence 46999999999832 23444555554322 34544454
Q ss_pred cC---CCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhC-CCCCHHHHHHHHHHHHHH
Q psy7780 208 TN---RIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAK-DDLSGADIKAICTEAGLM 282 (317)
Q Consensus 208 TN---~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t-~g~s~~dl~~l~~~A~~~ 282 (317)
|+ .++.|+|.+++ ||.. +.|++|+.++..++++......... ++..+..++..+ .| +++....+++.|...
T Consensus 341 ~~~~~~~~~l~~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~ 416 (456)
T 2c9o_A 341 TEDITSPHGIPLDLLD--RVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLL 416 (456)
T ss_dssp TSSCEEETTCCHHHHT--TEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHH
T ss_pred cccccccccCChhHHh--hcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHH
Confidence 32 27789999999 9975 6999999999999998876432222 222355566666 55 899999999999999
Q ss_pred HHHhcCCCcCHHHHHHHHHHHHhh
Q psy7780 283 ALRERRMKVTNEDFKKSKESVLYR 306 (317)
Q Consensus 283 a~~~~~~~it~~d~~~al~~v~~~ 306 (317)
|..+++..|+.+|+.+++.-++..
T Consensus 417 A~~~~~~~v~~~~v~~~~~~~~d~ 440 (456)
T 2c9o_A 417 AKINGKDSIEKEHVEEISELFYDA 440 (456)
T ss_dssp HHHTTCSSBCHHHHHHHHHHSCCH
T ss_pred HhhcCCCccCHHHHHHHHHHhcCh
Confidence 999999999999999998876533
No 99
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.55 E-value=7e-08 Score=91.36 Aligned_cols=184 Identities=17% Similarity=0.229 Sum_probs=105.8
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhh-----hc--------CCchHHHHHHHHHHHhhCCceEee
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQK-----YL--------GDGPKLVRELFRVAEEHAPSIVFI 142 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~-----~~--------g~~~~~l~~~f~~a~~~~P~Ii~i 142 (317)
+++++|.+||||++ ++.... +.+|+.++|+.+-.. .+ |... .-...|+.|.. .+|||
T Consensus 162 ~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~-~~~g~~~~a~~---gtlfl 237 (387)
T 1ny5_A 162 PVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVS-SKEGFFELADG---GTLFL 237 (387)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCS-CBCCHHHHTTT---SEEEE
T ss_pred CeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCccc-ccCCceeeCCC---cEEEE
Confidence 67899999999999 444333 469999999875321 11 1111 11234555433 69999
Q ss_pred cccccccccccCCCCCchhHHHHHHHHHHHHhc--CCCcccccccchhhhcccccccCCCCeEEEEEcCCC-------CC
Q psy7780 143 DEIDAVGTKRYDSNSGGEREIQRTMLELLNQLD--GFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-------ET 213 (317)
Q Consensus 143 DEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld--~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-------~~ 213 (317)
|||+.+.. +.+..|..+|+.-. ...+. ...+.++.+|+|||+. ..
T Consensus 238 dei~~l~~-----------~~q~~Ll~~l~~~~~~~~g~~---------------~~~~~~~rii~at~~~l~~~~~~g~ 291 (387)
T 1ny5_A 238 DEIGELSL-----------EAQAKLLRVIESGKFYRLGGR---------------KEIEVNVRILAATNRNIKELVKEGK 291 (387)
T ss_dssp ESGGGCCH-----------HHHHHHHHHHHHSEECCBTCC---------------SBEECCCEEEEEESSCHHHHHHTTS
T ss_pred cChhhCCH-----------HHHHHHHHHHhcCcEEeCCCC---------------ceeeccEEEEEeCCCCHHHHHHcCC
Confidence 99999843 34666667766511 11110 0011468899999973 22
Q ss_pred CCccccCCCcce-eEEEeCCCC--HHHHHHHHHHHhcCC----CCC-cCCCHHHHHHhC-CCC--CHHHHHHHHHHHHHH
Q psy7780 214 LDPALIRPGRID-RKIEFPLPD--EKTKRRIFNIHTSRM----TLA-EDVNLQELIMAK-DDL--SGADIKAICTEAGLM 282 (317)
Q Consensus 214 Ld~al~rpgRf~-~~I~~~~P~--~~~r~~Il~~~l~~~----~~~-~~~~~~~ia~~t-~g~--s~~dl~~l~~~A~~~ 282 (317)
+.+.|.. |+. ..|++|+.. .++...+++.++++. ... ...+.+.+.... ..+ +-++|++++++|+..
T Consensus 292 fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~ 369 (387)
T 1ny5_A 292 FREDLYY--RLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLF 369 (387)
T ss_dssp SCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred ccHHHHH--hhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 3444443 442 456666653 366666666665432 211 112222222221 334 456899999988776
Q ss_pred HHHhcCCCcCHHHHHHHH
Q psy7780 283 ALRERRMKVTNEDFKKSK 300 (317)
Q Consensus 283 a~~~~~~~it~~d~~~al 300 (317)
+ ....|+.+|+-..+
T Consensus 370 ~---~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 370 S---EGKFIDRGELSCLV 384 (387)
T ss_dssp C---CSSEECHHHHHHHC
T ss_pred C---CCCcCcHHHCcHhh
Confidence 5 34579999986543
No 100
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.51 E-value=5.7e-08 Score=79.64 Aligned_cols=53 Identities=11% Similarity=0.127 Sum_probs=39.9
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeeccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
...|+||+|+|||+ +++..+ |...+++++.++... +....|.+|+|||++.+.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccC
Confidence 56789999999999 666655 777888888776543 112357899999998753
No 101
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.50 E-value=1.9e-06 Score=78.97 Aligned_cols=163 Identities=20% Similarity=0.215 Sum_probs=93.3
Q ss_pred hhHHHhhhcCCCchh---hhhhcCCceEEEEechhhh------------h---hhcCC---------------------c
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTSATFLRVVGSELI------------Q---KYLGD---------------------G 121 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~------------~---~~~g~---------------------~ 121 (317)
+..+++|++|+|||+ .++++.+ ++.+++.... . ...+. .
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPR 109 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccc
Confidence 357899999999999 7777766 6666654321 1 11111 0
Q ss_pred hHHHHHHHHH----HHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhccccccc
Q psy7780 122 PKLVRELFRV----AEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIY 197 (317)
Q Consensus 122 ~~~l~~~f~~----a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~ 197 (317)
...+..+++. +....|.+|+|||++.+.... .....+....+..+++..
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~----~~~~~~~~~~L~~~~~~~----------------------- 162 (350)
T 2qen_A 110 KLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG----SRGGKELLALFAYAYDSL----------------------- 162 (350)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT----TTTTHHHHHHHHHHHHHC-----------------------
T ss_pred cchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC----ccchhhHHHHHHHHHHhc-----------------------
Confidence 1223333333 333348999999999986421 011223334444443321
Q ss_pred CCCCeEEEEEcCCCCCC---------CccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCC
Q psy7780 198 LPGDVKVIMATNRIETL---------DPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDL 267 (317)
Q Consensus 198 ~~~~v~vI~tTN~~~~L---------d~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~ 267 (317)
.++.+|.|+.....+ ...+. ||+...+.+++.+.++..++++..+...+.. ....+..+...|.|+
T Consensus 163 --~~~~~il~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~ 238 (350)
T 2qen_A 163 --PNLKIILTGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGI 238 (350)
T ss_dssp --TTEEEEEEESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTC
T ss_pred --CCeEEEEECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC
Confidence 345566665442111 22233 3666789999999999999998876543322 223456677778774
Q ss_pred CHHHHHHHHH
Q psy7780 268 SGADIKAICT 277 (317)
Q Consensus 268 s~~dl~~l~~ 277 (317)
|.-+..++.
T Consensus 239 -P~~l~~~~~ 247 (350)
T 2qen_A 239 -PGWLVVFGV 247 (350)
T ss_dssp -HHHHHHHHH
T ss_pred -HHHHHHHHH
Confidence 555655554
No 102
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.45 E-value=5e-08 Score=81.89 Aligned_cols=65 Identities=9% Similarity=0.022 Sum_probs=41.5
Q ss_pred hHHHhhhcCCCchh---hhhhcC----CceEEEEechhhhhhhcCCchH-HHHHHHHHHHhhCCceEeecccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----SATFLRVVGSELIQKYLGDGPK-LVRELFRVAEEHAPSIVFIDEIDAV 148 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----~~~~~~v~~s~l~~~~~g~~~~-~l~~~f~~a~~~~P~Ii~iDEiD~l 148 (317)
..+|+||||||||+ ++|+.+ |..++.+++.++...+...... ....+++. -..|.+|+|||++..
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSE 112 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCC
Confidence 57899999999999 666655 6677788888776543211000 00012222 235789999999854
No 103
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.40 E-value=3.4e-07 Score=104.73 Aligned_cols=140 Identities=17% Similarity=0.241 Sum_probs=91.9
Q ss_pred hHHHhhhcCCCchh----hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHH-----Hh-----------hCCceEe
Q psy7780 82 SELIQKYLGDGPKL----AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVA-----EE-----------HAPSIVF 141 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a-----~~-----------~~P~Ii~ 141 (317)
|+||.||||||||+ ++++..+.+++.++++.-. +...+...++.- +. ....|+|
T Consensus 1306 pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~T------ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlF 1379 (3245)
T 3vkg_A 1306 PLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT------TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVF 1379 (3245)
T ss_dssp CCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTC------CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEE
T ss_pred cEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCC------CHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEE
Confidence 89999999999997 5666667788889887632 234455555421 00 1236999
Q ss_pred ecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC-----CCCc
Q psy7780 142 IDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-----TLDP 216 (317)
Q Consensus 142 iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~-----~Ld~ 216 (317)
|||++--.... -+.......|.++++. .++.... +...... .++.+|+|.|.|. .|++
T Consensus 1380 iDDiNmp~~D~-----yGtQ~~ielLrqlld~-~g~yd~~----------~~~~~~i-~d~~~vaamnPp~~gGr~~l~~ 1442 (3245)
T 3vkg_A 1380 CDEINLPSTDK-----YGTQRVITFIRQMVEK-GGFWRTS----------DHTWIKL-DKIQFVGACNPPTDAGRVQLTH 1442 (3245)
T ss_dssp ETTTTCCCCCT-----TSCCHHHHHHHHHHHH-SEEEETT----------TTEEEEE-SSEEEEEEECCTTSTTCCCCCH
T ss_pred ecccCCCCccc-----cccccHHHHHHHHHHc-CCeEECC----------CCeEEEe-cCeEEEEEcCCCCCCCCccCCH
Confidence 99998532221 1223345566666654 2221110 0011111 6788999999884 5999
Q ss_pred cccCCCcceeEEEeCCCCHHHHHHHHHHHhc
Q psy7780 217 ALIRPGRIDRKIEFPLPDEKTKRRIFNIHTS 247 (317)
Q Consensus 217 al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~ 247 (317)
+++| ||. .++++.|+.++...|+..++.
T Consensus 1443 Rf~r--~F~-vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1443 RFLR--HAP-ILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp HHHT--TCC-EEECCCCCHHHHHHHHHHHHH
T ss_pred HHHh--hce-EEEeCCCCHHHHHHHHHHHHH
Confidence 9999 996 699999999999999876644
No 104
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.35 E-value=2.1e-07 Score=79.39 Aligned_cols=66 Identities=18% Similarity=0.261 Sum_probs=43.8
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhhcCCc-hHHHHHHHHHHHhhCCceEeeccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKYLGDG-PKLVRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~~g~~-~~~l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
+.+|+||||||||+ ++++++ +.+++.++++++........ ...+..++..... +.+|+|||++...
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 67899999999999 777666 67888899988766432111 1112333443333 3699999997653
No 105
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.24 E-value=1.1e-06 Score=97.04 Aligned_cols=99 Identities=16% Similarity=0.140 Sum_probs=66.1
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechh----hhhhhcC------------CchHHHHHHHHHHHhhCCce
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSE----LIQKYLG------------DGPKLVRELFRVAEEHAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~----l~~~~~g------------~~~~~l~~~f~~a~~~~P~I 139 (317)
.++++||||||||+ ++|.+ .|.....++..+ +..+..| .+++.++.++..++..+|++
T Consensus 1429 ~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~l 1508 (2050)
T 3cmu_A 1429 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 1508 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCCE
Confidence 68899999999999 33333 344555555442 2222333 45678888899999999999
Q ss_pred Eeecccccccccc---cCCCCCchhHHHHHHHHHHHHhcCCCcc
Q psy7780 140 VFIDEIDAVGTKR---YDSNSGGEREIQRTMLELLNQLDGFDSR 180 (317)
Q Consensus 140 i~iDEiD~l~~~r---~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 180 (317)
|+||+++.+.+.+ +..++.....-.+.+.++|.+|+++...
T Consensus 1509 VVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~ 1552 (2050)
T 3cmu_A 1509 IVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 1552 (2050)
T ss_dssp EEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHT
T ss_pred EEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHh
Confidence 9999999998753 2222212222356778888888877655
No 106
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.24 E-value=2e-07 Score=87.93 Aligned_cols=110 Identities=18% Similarity=0.142 Sum_probs=69.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccc-cccCCCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGT-KRYDSNS 157 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~-~r~~~~~ 157 (317)
.+++.||||+|||| +++...+..++.+..++-. ....+.. ..+.+++++||++.+.. .|.- ..
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~------~~~~lg~------~~q~~~~l~dd~~~~~~~~r~l-~~ 237 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDR------LNFELGV------AIDQFLVVFEDVKGTGGESRDL-PS 237 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTT------HHHHHGG------GTTCSCEEETTCCCSTTTTTTC-CC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchh------HHHHHHH------hcchhHHHHHHHHHHHHHHhhc-cc
Confidence 46789999999999 8888877766554332200 0111222 22347889999999876 3311 11
Q ss_pred CchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCccccCCCcceeEEEeCC
Q psy7780 158 GGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPL 232 (317)
Q Consensus 158 ~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~ 232 (317)
+.. .. ....+.+.+|| .+.|+++||+++.+ +++++|||++..++..+
T Consensus 238 ~~~--~~-~~~~l~~~ldG------------------------~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 238 GQG--IN-NLDNLRDYLDG------------------------SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp CSH--HH-HHHTTHHHHHC------------------------SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred cCc--ch-HHHHHHHHhcC------------------------CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 111 11 22344444553 34588999999999 79999999998777654
No 107
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.21 E-value=1.1e-06 Score=82.48 Aligned_cols=168 Identities=17% Similarity=0.276 Sum_probs=92.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc--eEEEEechhhhhh-------------hcCCchHHHHHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA--TFLRVVGSELIQK-------------YLGDGPKLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~--~~~~v~~s~l~~~-------------~~g~~~~~l~~~f~~a~~~~P~Ii~iD 143 (317)
++++.|++||||++ ++....+. .|+.++|+.+-.. +.|... .-.-.|+.|.. ..||||
T Consensus 154 ~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~-~~~g~~~~a~~---gtlfld 229 (368)
T 3dzd_A 154 PVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALT-RKKGKLELADQ---GTLFLD 229 (368)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCC-CEECHHHHTTT---SEEEEE
T ss_pred hheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCccc-ccCChHhhcCC---CeEEec
Confidence 68899999999998 44443332 3999999864221 111110 01123454433 589999
Q ss_pred ccccccccccCCCCCchhHHHHHHHHHHHHhc--CCCcccccccchhhhcccccccCCCCeEEEEEcCCC-------CCC
Q psy7780 144 EIDAVGTKRYDSNSGGEREIQRTMLELLNQLD--GFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI-------ETL 214 (317)
Q Consensus 144 EiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld--~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~-------~~L 214 (317)
||+.+.. ..+..|..+|+.-. ...+. ...+-++.+|+|||+. ..+
T Consensus 230 ei~~l~~-----------~~Q~~Ll~~l~~~~~~~~g~~---------------~~~~~~~rii~at~~~l~~~v~~g~f 283 (368)
T 3dzd_A 230 EVGELDQ-----------RVQAKLLRVLETGSFTRLGGN---------------QKIEVDIRVISATNKNLEEEIKKGNF 283 (368)
T ss_dssp TGGGSCH-----------HHHHHHHHHHHHSEECCBTCC---------------CBEECCCEEEEEESSCHHHHHHTTSS
T ss_pred ChhhCCH-----------HHHHHHHHHHHhCCcccCCCC---------------cceeeeeEEEEecCCCHHHHHHcCCc
Confidence 9999843 34666666666421 11110 0011467899999963 123
Q ss_pred CccccCCCcce-eEEEeCCCCH--HHHHHHHHHHhcCC----CCC-cCCCH---HHHHHhC-CCCCHHHHHHHHHHHHHH
Q psy7780 215 DPALIRPGRID-RKIEFPLPDE--KTKRRIFNIHTSRM----TLA-EDVNL---QELIMAK-DDLSGADIKAICTEAGLM 282 (317)
Q Consensus 215 d~al~rpgRf~-~~I~~~~P~~--~~r~~Il~~~l~~~----~~~-~~~~~---~~ia~~t-~g~s~~dl~~l~~~A~~~ 282 (317)
.+.|.. |+. ..|++|+..+ ++...+++.++.+. ... ...+- ..+.... .| +-+++++++++|+..
T Consensus 284 r~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpG-NvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 284 REDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKG-NVRELKNLIERAVIL 360 (368)
T ss_dssp CHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTT-HHHHHHHHHHHHHHT
T ss_pred cHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCc-HHHHHHHHHHHHHHh
Confidence 334444 443 3577887755 67777777766432 111 12222 2232222 22 457788888877654
No 108
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.21 E-value=6.7e-06 Score=78.90 Aligned_cols=165 Identities=16% Similarity=0.205 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCC
Q psy7780 122 PKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGD 201 (317)
Q Consensus 122 ~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (317)
+...+...+.|..+ .|+++||+|.++....+ .+++.....+-..||..+++..... +| ....-.+
T Consensus 238 ~~~~~~ai~~ae~~--~il~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~-------~~----~~~d~~~ 302 (444)
T 1g41_A 238 EELKQKAIDAVEQN--GIVFIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVST-------KH----GMVKTDH 302 (444)
T ss_dssp HHHHHHHHHHHHHH--CEEEEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEE-------TT----EEEECTT
T ss_pred HHHHHHHHHHhccC--CeeeHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhccccccc-------cc----ceecCCc
Confidence 44455566666454 59999999999876431 2222211123335555566643321 01 0011268
Q ss_pred eEEEEEc-----CCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHH---HHh----------cCCCCC-cCCCHHHHHH
Q psy7780 202 VKVIMAT-----NRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFN---IHT----------SRMTLA-EDVNLQELIM 262 (317)
Q Consensus 202 v~vI~tT-----N~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~---~~l----------~~~~~~-~~~~~~~ia~ 262 (317)
|++|+|. |..+ +-|.|+. ||..+|.|+.++.++..+|+. .++ ....+. .+..+..|++
T Consensus 303 ilfI~~gaf~~~~~~d-lipel~~--R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~ 379 (444)
T 1g41_A 303 ILFIASGAFQVARPSD-LIPELQG--RLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAE 379 (444)
T ss_dssp CEEEEEECCSSCCGGG-SCHHHHT--TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHH
T ss_pred EEEEeccccccCChhh-cchHHhc--ccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHH
Confidence 9999987 5444 5578998 999999999999999999993 111 111111 2223555655
Q ss_pred -------hCCCCCHHHHHHHHHHHHHHHHHhc------CCCcCHHHHHHHHHHHH
Q psy7780 263 -------AKDDLSGADIKAICTEAGLMALRER------RMKVTNEDFKKSKESVL 304 (317)
Q Consensus 263 -------~t~g~s~~dl~~l~~~A~~~a~~~~------~~~it~~d~~~al~~v~ 304 (317)
.|...-.+.|++++..+...+..+- .-.|+.+++.+.+..++
T Consensus 380 ~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~ 434 (444)
T 1g41_A 380 AAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVV 434 (444)
T ss_dssp HHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGGGCTTCEEEECHHHHHHHHTTTT
T ss_pred HHHHhccCCccCCchHHHHHHHHHHHHHHhhccccCCCeEEEeHHHHHHhcCccc
Confidence 3566667777777766554433331 23588998887766544
No 109
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.13 E-value=5.2e-07 Score=82.75 Aligned_cols=66 Identities=14% Similarity=0.109 Sum_probs=42.2
Q ss_pred hHHHhhhcCCCchh---hhhhcC----CceEEEEechhhhhhhcCCc-hHHHHHHHHHHHhhCCceEeeccccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----SATFLRVVGSELIQKYLGDG-PKLVRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----~~~~~~v~~s~l~~~~~g~~-~~~l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
+.+|+||||||||+ ++|+++ +..++.+++++++....+.. ...+...+.... .+.+|+|||++...
T Consensus 154 ~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 154 GLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAEQ 227 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC--
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCC
Confidence 67899999999999 666644 57888899988876543321 111222233222 34699999997653
No 110
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.01 E-value=7.8e-06 Score=93.80 Aligned_cols=136 Identities=15% Similarity=0.097 Sum_probs=93.3
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeecccccccccccCCCCCch
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGE 160 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~ 160 (317)
...||+|||||. .+|+.+|.+++.++|++-++ ...+..+|.-+-+. .+..+|||++.+-
T Consensus 608 ~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl~----------- 669 (3245)
T 3vkg_A 608 NPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRLE----------- 669 (3245)
T ss_dssp EEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSSC-----------
T ss_pred CCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcCC-----------
Confidence 477999999998 99999999999999987433 45667777766554 3789999999872
Q ss_pred hHHHHHHHHHHHHhcCCCcccccccchhhhcc-cccccCCCCeEEEEEcCC----CCCCCccccCCCcceeEEEeCCCCH
Q psy7780 161 REIQRTMLELLNQLDGFDSRVQNRRLSEVYSS-LTLIYLPGDVKVIMATNR----IETLDPALIRPGRIDRKIEFPLPDE 235 (317)
Q Consensus 161 ~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~-~~~~~~~~~v~vI~tTN~----~~~Ld~al~rpgRf~~~I~~~~P~~ 235 (317)
.++.+++.+.+..+...-... ....... +....+.....+++|.|. ...||++|+. || +.|.++.|+.
T Consensus 670 ~~vLSvv~~qi~~I~~a~~~~----~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v~m~~Pd~ 742 (3245)
T 3vkg_A 670 ERILSAVSQQIQTIQVALKEN----SKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSMAMIKPDR 742 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT----CSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEEECCSCCH
T ss_pred HHHHHHHHHHHHHHHHHHHcC----CCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEEEEeCCCH
Confidence 334555544443221110000 0011122 334555677889999984 4679999999 99 5799999999
Q ss_pred HHHHHHHHH
Q psy7780 236 KTKRRIFNI 244 (317)
Q Consensus 236 ~~r~~Il~~ 244 (317)
+...+|+-.
T Consensus 743 ~~i~ei~L~ 751 (3245)
T 3vkg_A 743 EMIAQVMLY 751 (3245)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888643
No 111
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.94 E-value=1.8e-05 Score=73.11 Aligned_cols=170 Identities=12% Similarity=0.078 Sum_probs=102.0
Q ss_pred hHHHhhhcCCCchh---hhhhcC---Cc-eEEEEechhhhhhhcCCchHHHHHHHHHHHh----hCCceEeeccccc-cc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SA-TFLRVVGSELIQKYLGDGPKLVRELFRVAEE----HAPSIVFIDEIDA-VG 149 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~-~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~----~~P~Ii~iDEiD~-l~ 149 (317)
.+||+|++|+||++ ++++.+ +. ++..+.. -+ ...++++++.+.. ...-|++|||+|. +.
T Consensus 20 ~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------~~--~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~ 90 (343)
T 1jr3_D 20 AYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSI-------DP--NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPN 90 (343)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEEC-------CT--TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCC
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEe-------cC--CCCHHHHHHHhcCcCCccCCeEEEEECCCCCCC
Confidence 47899999999987 444433 22 2222211 01 2345666666643 2246999999987 52
Q ss_pred ccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCC------CCCCccccCCCc
Q psy7780 150 TKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRI------ETLDPALIRPGR 223 (317)
Q Consensus 150 ~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~------~~Ld~al~rpgR 223 (317)
.. ....| +..++... .++++|.+|+.+ ..+.+++.+ |
T Consensus 91 ~~-----------~~~aL---l~~le~p~---------------------~~~~~il~~~~~~~~~~~~k~~~~i~s--r 133 (343)
T 1jr3_D 91 AA-----------INEQL---LTLTGLLH---------------------DDLLLIVRGNKLSKAQENAAWFTALAN--R 133 (343)
T ss_dssp TT-----------HHHHH---HHHHTTCB---------------------TTEEEEEEESCCCTTTTTSHHHHHHTT--T
T ss_pred hH-----------HHHHH---HHHHhcCC---------------------CCeEEEEEcCCCChhhHhhHHHHHHHh--C
Confidence 11 22333 33333321 345555555543 346778888 7
Q ss_pred ceeEEEeCCCCHHHHHHHHHHHhcCCCCC-cCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHH
Q psy7780 224 IDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKES 302 (317)
Q Consensus 224 f~~~I~~~~P~~~~r~~Il~~~l~~~~~~-~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~ 302 (317)
+ ..+.|.+++.++....++..+++.++. +...+..+++.+.| +.+++.+.++..+..+ +...||.+|+.+.+..
T Consensus 134 ~-~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~---~~~~It~e~V~~~~~~ 208 (343)
T 1jr3_D 134 S-VQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW---PDGKLTLPRVEQAVND 208 (343)
T ss_dssp C-EEEEECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC---TTCEECHHHHHHHHHH
T ss_pred c-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc---CCCCCCHHHHHHHHhh
Confidence 7 478999999999999998887765544 22235556666554 5666666666544432 3457898888776554
No 112
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.87 E-value=8.2e-06 Score=70.22 Aligned_cols=25 Identities=4% Similarity=0.021 Sum_probs=20.3
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEE
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFL 106 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~ 106 (317)
..||+||||||||+ ++|+.++-.++
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 37899999999999 88888765443
No 113
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=97.80 E-value=2.9e-05 Score=67.78 Aligned_cols=61 Identities=23% Similarity=0.204 Sum_probs=55.3
Q ss_pred eEEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEecccccccccccCCCCch
Q psy7780 2 SVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPM 64 (317)
Q Consensus 2 ~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~ 64 (317)
++|+|+++++++.++|+ +++++|++.++++++++.|+||++|.|| .++.+++++|.+.-.-
T Consensus 100 ~iGtvlev~dd~~aiV~-s~Gr~~~V~Vsp~Vd~e~LkPG~rVaLN-eSlaVVevLp~E~~Ge 160 (251)
T 3m9b_A 100 GYGVLLATHDDDTVDVF-TSGRKMRLTCSPNIDAASLKKGQTVRLN-EALTVVEAGTFEAVGE 160 (251)
T ss_dssp EEEEEEEECSSSCEEEE-CSSSCCEECBCTTSCTTTSCSSCEEEEC-TTCCBCCCCCCCCCSE
T ss_pred eEEEEEEEcCCCEEEEE-eCCceEEEEeCCCCCHHHCCCCCEEEeC-CccEEEEecCCCCccc
Confidence 68999999999999999 4779999999999999999999999996 5999999999776443
No 114
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.48 E-value=4e-05 Score=68.58 Aligned_cols=22 Identities=14% Similarity=0.034 Sum_probs=18.8
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA 103 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~ 103 (317)
.++|+||||||||+ ++|+....
T Consensus 106 ~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcc
Confidence 47899999999999 89987654
No 115
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.45 E-value=0.00013 Score=61.19 Aligned_cols=22 Identities=14% Similarity=0.163 Sum_probs=16.6
Q ss_pred HHhhhcCCCchh---hhhhcCCceE
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATF 105 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~ 105 (317)
.+.||+|+|||| .++..++..+
T Consensus 4 ~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 4 IITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCcC
Confidence 468999999999 6776665433
No 116
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.13 E-value=0.00024 Score=66.05 Aligned_cols=69 Identities=16% Similarity=0.095 Sum_probs=40.7
Q ss_pred hHHHhhhcCCCchh---hhhh---cCCceEEEEechhhh----hhhcCC------------chHHHHHHHHHHHhhCCce
Q psy7780 82 SELIQKYLGDGPKL---AVAN---QTSATFLRVVGSELI----QKYLGD------------GPKLVRELFRVAEEHAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~---~~~~~~~~v~~s~l~----~~~~g~------------~~~~l~~~f~~a~~~~P~I 139 (317)
..+++|+||+|||+ .+|. ..+...++++...-. ....|. .+..+..+...++...|.+
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~l 142 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDI 142 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCE
Confidence 46789999999999 3332 234556666543211 111221 1222222333444667999
Q ss_pred Eeecccccccc
Q psy7780 140 VFIDEIDAVGT 150 (317)
Q Consensus 140 i~iDEiD~l~~ 150 (317)
|+||++..+.+
T Consensus 143 IVIDsl~~l~~ 153 (349)
T 2zr9_A 143 IVIDSVAALVP 153 (349)
T ss_dssp EEEECGGGCCC
T ss_pred EEEcChHhhcc
Confidence 99999999985
No 117
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.06 E-value=0.00037 Score=64.95 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=41.6
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhhh----hhcC------------CchHHHHHHHHHHHhhCCce
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQ----KYLG------------DGPKLVRELFRVAEEHAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~----~~~g------------~~~~~l~~~f~~a~~~~P~I 139 (317)
..+++||||+|||+ .+|.. .+..+++++...... ..+| ..+..+..+....+...|.+
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dl 142 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDL 142 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCe
Confidence 46789999999999 33333 355666776643211 1111 11222333333334577899
Q ss_pred Eeecccccccc
Q psy7780 140 VFIDEIDAVGT 150 (317)
Q Consensus 140 i~iDEiD~l~~ 150 (317)
++||.+..+.+
T Consensus 143 vVIDSi~~l~~ 153 (356)
T 3hr8_A 143 IVVDSVAALVP 153 (356)
T ss_dssp EEEECTTTCCC
T ss_pred EEehHhhhhcC
Confidence 99999999886
No 118
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.06 E-value=0.00058 Score=63.86 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=40.7
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhhh----hhhcCC------------chHHHHHHHHHHHhhCCce
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELI----QKYLGD------------GPKLVRELFRVAEEHAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~----~~~~g~------------~~~~l~~~f~~a~~~~P~I 139 (317)
..+++|+||+|||+ .+|.+ .+..+++++...-. ....|. .+..+..+-...+...+.+
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~l 155 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDV 155 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSE
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCE
Confidence 46789999999999 33322 35566666654311 111121 1222222222334567899
Q ss_pred Eeeccccccccc
Q psy7780 140 VFIDEIDAVGTK 151 (317)
Q Consensus 140 i~iDEiD~l~~~ 151 (317)
|+||.+..+.+.
T Consensus 156 VVIDsl~~l~~~ 167 (366)
T 1xp8_A 156 VVVDSVAALTPR 167 (366)
T ss_dssp EEEECTTTCCCS
T ss_pred EEEeChHHhccc
Confidence 999999999853
No 119
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.98 E-value=0.00073 Score=58.39 Aligned_cols=70 Identities=11% Similarity=0.096 Sum_probs=41.5
Q ss_pred hHHHhhhcCCCchh---hhhhc--C-------CceEEEEechh------hhh--hhcCC---------------chH---
Q psy7780 82 SELIQKYLGDGPKL---AVANQ--T-------SATFLRVVGSE------LIQ--KYLGD---------------GPK--- 123 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~--~-------~~~~~~v~~s~------l~~--~~~g~---------------~~~--- 123 (317)
..++.||||+|||+ .+|.. . +...++++..+ +.. ...|. ...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 105 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQT 105 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCHHHHH
Confidence 35789999999999 44442 2 45677776543 110 01111 111
Q ss_pred -HHHHHHHHHHhhCCceEeeccccccccc
Q psy7780 124 -LVRELFRVAEEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 124 -~l~~~f~~a~~~~P~Ii~iDEiD~l~~~ 151 (317)
.+..+.+.+....|.+|+|||+..+...
T Consensus 106 ~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 106 QLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 1233444455667999999999988754
No 120
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.88 E-value=0.017 Score=50.16 Aligned_cols=63 Identities=13% Similarity=0.101 Sum_probs=33.2
Q ss_pred CCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHH
Q psy7780 212 ETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMA 283 (317)
Q Consensus 212 ~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a 283 (317)
+.+|..+++ +.|.+..+..|-.+ +++.+-...-..++..-..+... |+...|.+|-.-|...+
T Consensus 146 e~vpd~~~~--~a~~v~lvD~~p~~----l~~rl~~g~vy~~~~~~~a~~~~---f~~~nl~~lrelal~~~ 208 (228)
T 2r8r_A 146 ETLPDWVLQ--EAFDLVLIDLPPRE----LLERLRDGKVYVPEQARAAIDAF---FTQTNLTALREMAMQTA 208 (228)
T ss_dssp SCBCHHHHH--TCSEEEEBCCCHHH----HHHHHHTTCCCCTTCCHHHHHHH---CCHHHHHHHHHHHHHHH
T ss_pred CcCccHHHh--hCCeEEEecCCHHH----HHHHHHCCCccChhHHHHHHHhh---hchhhHHHHHHHHHHHH
Confidence 456777777 77767777766543 33333322222222222223332 78888877765454444
No 121
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.87 E-value=0.0008 Score=74.82 Aligned_cols=99 Identities=14% Similarity=0.169 Sum_probs=59.2
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhhh----cC--------CchHHHHHHHHHHHh----hCCce
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQKY----LG--------DGPKLVRELFRVAEE----HAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~~----~g--------~~~~~l~~~f~~a~~----~~P~I 139 (317)
.+++.|+||+|||+ .+|.++ +.+++++++.+-.... .| ..+..+..+++.+++ ..|++
T Consensus 734 lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~~~~~~L 813 (2050)
T 3cmu_A 734 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 813 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhhccCCCE
Confidence 56889999999998 333333 4578888876533332 33 223346667776655 67999
Q ss_pred Eeecccccccc-cccC--CCCCchhHHHHHHHHHHHHhcCCCcc
Q psy7780 140 VFIDEIDAVGT-KRYD--SNSGGEREIQRTMLELLNQLDGFDSR 180 (317)
Q Consensus 140 i~iDEiD~l~~-~r~~--~~~~~~~~~~~~l~~ll~~ld~~~~~ 180 (317)
|+||.+..+.. .... .++....-..+.+.+++..|..+...
T Consensus 814 VIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke 857 (2050)
T 3cmu_A 814 IVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 857 (2050)
T ss_dssp EEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHT
T ss_pred EEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999986 3211 11111111234456666666655443
No 122
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.87 E-value=0.0024 Score=54.41 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhCCc--eEeeccccccc
Q psy7780 125 VRELFRVAEEHAPS--IVFIDEIDAVG 149 (317)
Q Consensus 125 l~~~f~~a~~~~P~--Ii~iDEiD~l~ 149 (317)
.+.+...+..+.|. +|+|||+..+.
T Consensus 110 ~~~~~~~~~~~~~~~~llilDe~~~~~ 136 (235)
T 2w0m_A 110 VNKVIEAKQKLGYGKARLVIDSVSALF 136 (235)
T ss_dssp HHHHHHHHHHHCSSCEEEEEETGGGGS
T ss_pred HHHHHHHHHhhCCCceEEEEECchHhh
Confidence 33444555667899 99999999875
No 123
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.79 E-value=0.0012 Score=61.46 Aligned_cols=69 Identities=16% Similarity=0.155 Sum_probs=41.6
Q ss_pred hHHHhhhcCCCchh---hhhh---cCCceEEEEechh----hhhhhcCC-----------chHHHHHHHH-HHHhhCCce
Q psy7780 82 SELIQKYLGDGPKL---AVAN---QTSATFLRVVGSE----LIQKYLGD-----------GPKLVRELFR-VAEEHAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~---~~~~~~~~v~~s~----l~~~~~g~-----------~~~~l~~~f~-~a~~~~P~I 139 (317)
..+++|+||+|||+ .+|. ..+..+++++... ......|. ....+.++.. .++...+.+
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~l 144 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 144 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCCE
Confidence 46889999999999 3332 2355677776632 21111121 1223333333 234567899
Q ss_pred Eeecccccccc
Q psy7780 140 VFIDEIDAVGT 150 (317)
Q Consensus 140 i~iDEiD~l~~ 150 (317)
|+||.+..+.+
T Consensus 145 VVIDsl~~l~~ 155 (356)
T 1u94_A 145 IVVDSVAALTP 155 (356)
T ss_dssp EEEECGGGCCC
T ss_pred EEEcCHHHhcc
Confidence 99999999975
No 124
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.74 E-value=0.0013 Score=60.29 Aligned_cols=70 Identities=13% Similarity=0.135 Sum_probs=42.5
Q ss_pred hHHHhhhcCCCchh---hhhhcC---------CceEEEEechhh------hh--hhcCC----------------ch---
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---------SATFLRVVGSEL------IQ--KYLGD----------------GP--- 122 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---------~~~~~~v~~s~l------~~--~~~g~----------------~~--- 122 (317)
..+++|+||+|||+ .+|... +...++++...- .. ...|. .+
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~ 188 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQI 188 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHH
T ss_pred EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHHHHH
Confidence 46899999999998 333332 456677765431 10 01111 11
Q ss_pred HHHHHHHHHHHh-hCCceEeeccccccccc
Q psy7780 123 KLVRELFRVAEE-HAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 123 ~~l~~~f~~a~~-~~P~Ii~iDEiD~l~~~ 151 (317)
..+..+...+++ ..|.+|+||.+..+...
T Consensus 189 ~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 189 AIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp HHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred HHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 123344445555 67899999999998753
No 125
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.72 E-value=0.0023 Score=54.25 Aligned_cols=29 Identities=7% Similarity=-0.051 Sum_probs=21.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEech
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGS 111 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s 111 (317)
.++.|+||+|||+ .+|...+...++++..
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~ 54 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGLLSGKKVAYVDTE 54 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCSEEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEEECC
Confidence 5789999999999 4444556677777654
No 126
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.65 E-value=0.007 Score=59.54 Aligned_cols=71 Identities=8% Similarity=0.087 Sum_probs=39.4
Q ss_pred CCeEEEEEcCCCCCCCccccCCCcceeEEEe-CCCCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHH
Q psy7780 200 GDVKVIMATNRIETLDPALIRPGRIDRKIEF-PLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275 (317)
Q Consensus 200 ~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~-~~P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l 275 (317)
.+..||.||........ . . |.. ..+.. ...+.++-.+++..+..............+++.+.|. |.-|..+
T Consensus 256 ~~~~ilvTsR~~~~~~~-~-~-~~~-~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~-PLal~~~ 327 (591)
T 1z6t_A 256 SQCQILLTTRDKSVTDS-V-M-GPK-YVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGS-PLVVSLI 327 (591)
T ss_dssp SSCEEEEEESCGGGGTT-C-C-SCE-EEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTC-HHHHHHH
T ss_pred CCCeEEEECCCcHHHHh-c-C-CCc-eEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCC-cHHHHHH
Confidence 34557778765432221 1 1 221 12222 3678899999998887542212234467888888885 5444433
No 127
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.59 E-value=0.0041 Score=53.78 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=17.7
Q ss_pred HHHHHHHhhCCceEeecccccccc
Q psy7780 127 ELFRVAEEHAPSIVFIDEIDAVGT 150 (317)
Q Consensus 127 ~~f~~a~~~~P~Ii~iDEiD~l~~ 150 (317)
.+...+....|.+|+|||.-+...
T Consensus 126 ~~~~~l~~~~p~~lilDep~~~ld 149 (251)
T 2ehv_A 126 YIYRVVKAINAKRLVIDSIPSIAL 149 (251)
T ss_dssp HHHHHHHHTTCSEEEEECHHHHHH
T ss_pred HHHHHHHhhCCCEEEEccHHHHHh
Confidence 344444567899999999988764
No 128
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.55 E-value=0.0021 Score=58.88 Aligned_cols=69 Identities=17% Similarity=0.152 Sum_probs=40.9
Q ss_pred HHHhhhcCCCchh----hhhhc----CCceEEEEechhhh----hhhcCCc--------hHHHHHH-HHH------HHhh
Q psy7780 83 ELIQKYLGDGPKL----AVANQ----TSATFLRVVGSELI----QKYLGDG--------PKLVREL-FRV------AEEH 135 (317)
Q Consensus 83 ~Ll~G~pGtGKT~----aiA~~----~~~~~~~v~~s~l~----~~~~g~~--------~~~l~~~-f~~------a~~~ 135 (317)
.+++||||+|||+ .+++. .+...+++++.+-+ -...|-. +....++ ++. .+..
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~~ 110 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIERG 110 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhcc
Confidence 5789999999999 22221 25677778764311 1112211 1122333 322 2456
Q ss_pred CCceEeeccccccccc
Q psy7780 136 APSIVFIDEIDAVGTK 151 (317)
Q Consensus 136 ~P~Ii~iDEiD~l~~~ 151 (317)
.|.+|+||-+.++.++
T Consensus 111 ~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 111 EKVVVFIDSLGNLASK 126 (333)
T ss_dssp CCEEEEEECSTTCBCC
T ss_pred CceEEEEecccccccc
Confidence 7999999999999864
No 129
>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A
Probab=96.54 E-value=0.0025 Score=51.43 Aligned_cols=59 Identities=25% Similarity=0.361 Sum_probs=48.9
Q ss_pred eEEEeeeeecC-CcEEEecccCCeeeeeeccccCcc------------------CcCcccEEEEecccccccccccCC
Q psy7780 2 SVGTLEEIIDD-NHAIVSTSVGSEHYVSILSFVDKD------------------QLEPGCSVLLNHKVHAVVGVLSDD 60 (317)
Q Consensus 2 ~~~~~~~~l~~-~~~~v~~~~~~~~~~~~~~~~~~~------------------~~~~~~~v~~~~~~~~~~~~l~~~ 60 (317)
.|.++.|+|++ ++++|..+.+.+.++.+++.+... .+++||.+.+|.++.-.++.+|..
T Consensus 69 ev~tv~EvL~d~~RalV~~~~deerVV~lA~~L~~~~~~~~~~~~~~~~~~~~~~lr~GDsllvD~rag~A~E~ipk~ 146 (153)
T 2wfw_A 69 EISTLREVLDDGLRALVVGHADEERIVWLAAPLAAVFADPEADIIAYDADSPTRKLRPGDSLLVDTKAGYAFERIPKA 146 (153)
T ss_dssp EEEEEEEECTTSSEEEEECTTCCEEEEEECHHHHHHCCCCC-----------------CCEEEEETTTTEEEEEECSC
T ss_pred CEEEEEEEeCCCCeEEEEccCCcEEEEEeehhhhcccccccccccccccccccCCCCCCCEEEEcCCCceEEEEcCcc
Confidence 47889999999 899999999999999999888654 799999999999999998888743
No 130
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.38 E-value=0.0018 Score=59.86 Aligned_cols=70 Identities=10% Similarity=0.008 Sum_probs=41.8
Q ss_pred hHHHhhhcCCCchh---hhhhc---------CCceEEEEechhh------hh--hhcCC----------------ch---
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---------TSATFLRVVGSEL------IQ--KYLGD----------------GP--- 122 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---------~~~~~~~v~~s~l------~~--~~~g~----------------~~--- 122 (317)
-.+++|+||+|||+ .+|.. .+...++++...- .. ...|. .+
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e~~~ 203 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQM 203 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTTHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHHHHH
Confidence 46789999999999 33332 2556777765431 11 00111 11
Q ss_pred HHHHHHHHHHHh--hCCceEeeccccccccc
Q psy7780 123 KLVRELFRVAEE--HAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 123 ~~l~~~f~~a~~--~~P~Ii~iDEiD~l~~~ 151 (317)
..+..+...+++ ..+.+|+||.+..+...
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 122333445555 67899999999998743
No 131
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.35 E-value=0.00048 Score=57.96 Aligned_cols=13 Identities=15% Similarity=0.146 Sum_probs=11.9
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
++++|+||+|||+
T Consensus 6 ~vi~G~~gsGKTT 18 (184)
T 2orw_A 6 TVITGPMYSGKTT 18 (184)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 5689999999999
No 132
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.30 E-value=0.0028 Score=69.61 Aligned_cols=99 Identities=15% Similarity=0.106 Sum_probs=68.2
Q ss_pred hHHHhhhcCCCchh----hh--hhcCCceEEEEechh----------------hhhhhcCCchHHHHHHHHHHHhhCCce
Q psy7780 82 SELIQKYLGDGPKL----AV--ANQTSATFLRVVGSE----------------LIQKYLGDGPKLVRELFRVAEEHAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----ai--A~~~~~~~~~v~~s~----------------l~~~~~g~~~~~l~~~f~~a~~~~P~I 139 (317)
.+++|||+|+|||+ ++ |+..|-....++... |.-.+...++..+.-+...++..+|++
T Consensus 1433 ~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~~ 1512 (1706)
T 3cmw_A 1433 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDV 1512 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCCE
Confidence 47899999999999 33 344566666665532 122245566888999999999999999
Q ss_pred EeecccccccccccCCCC---CchhHHHHHHHHHHHHhcCCCcc
Q psy7780 140 VFIDEIDAVGTKRYDSNS---GGEREIQRTMLELLNQLDGFDSR 180 (317)
Q Consensus 140 i~iDEiD~l~~~r~~~~~---~~~~~~~~~l~~ll~~ld~~~~~ 180 (317)
|++|-+.++.++..-.+. ..-.-..+.+++.|..+.+.-+.
T Consensus 1513 vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~ 1556 (1706)
T 3cmw_A 1513 IVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ 1556 (1706)
T ss_dssp EEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHh
Confidence 999999999987643221 11122346667777777776555
No 133
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.20 E-value=0.0028 Score=59.92 Aligned_cols=48 Identities=15% Similarity=0.251 Sum_probs=24.7
Q ss_pred HHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCC
Q psy7780 129 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGF 177 (317)
Q Consensus 129 f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~ 177 (317)
...+....|.+|+||++-.+....... .+...+.++.+.+++..+..+
T Consensus 266 ~~~l~~~~~~llVIDs~t~~~~~~~sg-~g~l~~Rq~~l~~il~~L~~l 313 (400)
T 3lda_A 266 AQMMSESRFSLIVVDSVMALYRTDFSG-RGELSARQMHLAKFMRALQRL 313 (400)
T ss_dssp HHHHHHSCEEEEEEETGGGGCC-------CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCceEEecchhhhCchhhcC-ccchHHHHHHHHHHHHHHHHH
Confidence 344445679999999999887643221 122223344444444444433
No 134
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.19 E-value=0.03 Score=59.35 Aligned_cols=68 Identities=6% Similarity=0.061 Sum_probs=42.2
Q ss_pred CeEEEEEcCCCCCCCccccCCCcceeEEEeCC-CCHHHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHH
Q psy7780 201 DVKVIMATNRIETLDPALIRPGRIDRKIEFPL-PDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIK 273 (317)
Q Consensus 201 ~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~-P~~~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~ 273 (317)
+..||.||......... . .....+.++. ++.++-.++|..+.............+|++.+.|+ |--|+
T Consensus 257 ~~~ilvTtR~~~~~~~~-~---~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~gl-PLal~ 325 (1249)
T 3sfz_A 257 QCQILLTTRDKSVTDSV-M---GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGS-PLVVS 325 (1249)
T ss_dssp SCEEEEEESSTTTTTTC-C---SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTC-HHHHH
T ss_pred CCEEEEEcCCHHHHHhh-c---CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCC-HHHHH
Confidence 34588888765443221 1 1234677775 78999999998877543322233467889998886 44444
No 135
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.14 E-value=0.016 Score=57.00 Aligned_cols=74 Identities=16% Similarity=0.329 Sum_probs=54.9
Q ss_pred ceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC--CCC
Q psy7780 138 SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE--TLD 215 (317)
Q Consensus 138 ~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~--~Ld 215 (317)
-+|+|||+..+.... ..++...+..+..+-- . -.|.+|.+|.+|. .|+
T Consensus 345 ivvVIDE~~~L~~~~-------~~~~~~~L~~Iar~GR----a-------------------~GIhLIlaTQRPs~d~I~ 394 (574)
T 2iut_A 345 IVVVVDEFADMMMIV-------GKKVEELIARIAQKAR----A-------------------AGIHLILATQRPSVDVIT 394 (574)
T ss_dssp EEEEESCCTTHHHHT-------CHHHHHHHHHHHHHCT----T-------------------TTEEEEEEESCCCTTTSC
T ss_pred EEEEEeCHHHHhhhh-------hHHHHHHHHHHHHHHh----h-------------------CCeEEEEEecCccccccc
Confidence 589999999887532 1234455555554411 1 5688999999988 799
Q ss_pred ccccCCCcceeEEEeCCCCHHHHHHHHH
Q psy7780 216 PALIRPGRIDRKIEFPLPDEKTKRRIFN 243 (317)
Q Consensus 216 ~al~rpgRf~~~I~~~~P~~~~r~~Il~ 243 (317)
..++. -|..+|.|...+..+...|+.
T Consensus 395 ~~Ira--n~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 395 GLIKA--NIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp HHHHH--TCCEEEEECCSCHHHHHHHHS
T ss_pred HHHHh--hhccEEEEEcCCHHHHHHhcC
Confidence 98887 788899999999988888874
No 136
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.11 E-value=0.014 Score=49.62 Aligned_cols=18 Identities=6% Similarity=0.226 Sum_probs=14.3
Q ss_pred hhCCceEeeccccccccc
Q psy7780 134 EHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 134 ~~~P~Ii~iDEiD~l~~~ 151 (317)
...|.+|+|||.-.....
T Consensus 123 ~~~~~llilDe~~~~l~~ 140 (231)
T 4a74_A 123 DRPVKLLIVDSLTSHFRS 140 (231)
T ss_dssp SSCEEEEEEETSSHHHHH
T ss_pred CCceeEEEECChHHHhcc
Confidence 567899999999877543
No 137
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.03 E-value=0.0015 Score=53.81 Aligned_cols=33 Identities=12% Similarity=0.101 Sum_probs=27.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~ 115 (317)
+++.|+||+|||| ++|..++.+|+.++...+..
T Consensus 6 i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~ 41 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIE 41 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhh
Confidence 4689999999999 99999999998877655443
No 138
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=95.86 E-value=0.017 Score=50.38 Aligned_cols=64 Identities=23% Similarity=0.286 Sum_probs=53.0
Q ss_pred eEEEeeeeecC-CcEEEecccCCeeeeeeccccCcc-----------------CcCcccEEEEecccccccccccCCCCc
Q psy7780 2 SVGTLEEIIDD-NHAIVSTSVGSEHYVSILSFVDKD-----------------QLEPGCSVLLNHKVHAVVGVLSDDTDP 63 (317)
Q Consensus 2 ~~~~~~~~l~~-~~~~v~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~v~~~~~~~~~~~~l~~~~~~ 63 (317)
.|.+|.|+|++ ++++|..+.+.+.++.+.+.+... .++|||.+.+|.++.-.++.+|.....
T Consensus 160 ev~tv~E~l~d~~R~lV~~~~~eerVv~lA~~L~~~~~~~~~~~~~~~~~~~~~lr~GDsllvD~rag~A~E~ip~~~~~ 239 (251)
T 3m9b_A 160 EISTLREILADGHRALVVGHADEERVVWLADPLIAEDLPDGLPEALNDDTRPRKLRPGDSLLVDTKAGYAFERIPLVPRG 239 (251)
T ss_dssp EEEEEEEECTTSSEEEEECSSSCEEEEECCGGGTCSCCCCCCCSSSCCCCSCCCCCTTCEEEECTTTCBEEEECCCCC--
T ss_pred cEEEEEEEecCCCEEEEecCCCceEEEEechhhhccccccccccccccccccCCCCCCCEEEEeCCCceEEEEccCCCCc
Confidence 47899999965 599999999999999999888665 899999999999999999988876554
Q ss_pred hh
Q psy7780 64 MV 65 (317)
Q Consensus 64 ~~ 65 (317)
..
T Consensus 240 ~~ 241 (251)
T 3m9b_A 240 SA 241 (251)
T ss_dssp --
T ss_pred ch
Confidence 43
No 139
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.85 E-value=0.0063 Score=55.38 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=17.8
Q ss_pred HHHHHHHh-hCCceEeeccccccccc
Q psy7780 127 ELFRVAEE-HAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 127 ~~f~~a~~-~~P~Ii~iDEiD~l~~~ 151 (317)
.+....++ ..+.+|+||.+..+...
T Consensus 194 ~l~~~~~~~~~~~lvVIDsl~~l~~~ 219 (322)
T 2i1q_A 194 KIEDLIQEGNNIKLVVIDSLTSTFRN 219 (322)
T ss_dssp THHHHHHTTCEEEEEEEECSSHHHHH
T ss_pred HHHHHHhhccCccEEEEECcHHHHHH
Confidence 34444455 56889999999998743
No 140
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.85 E-value=0.028 Score=48.27 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=17.0
Q ss_pred HHHHHHHhhCCceEeeccccccc
Q psy7780 127 ELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 127 ~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
.+-+.+.+..|.+|+||++..+.
T Consensus 119 ~i~~~~~~~~~~~vviD~~~~l~ 141 (247)
T 2dr3_A 119 VLRQAIRDINAKRVVVDSVTTLY 141 (247)
T ss_dssp HHHHHHHHHTCCEEEEETSGGGT
T ss_pred HHHHHHHHhCCCEEEECCchHhh
Confidence 33344455778999999999886
No 141
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.83 E-value=0.0028 Score=55.11 Aligned_cols=66 Identities=14% Similarity=0.156 Sum_probs=37.9
Q ss_pred hHHHhhhcCCCchh---hhh---hcCCceEEEEechh-------hhhhhcCCc-----hHHHHHHHHHHHh----hCCce
Q psy7780 82 SELIQKYLGDGPKL---AVA---NQTSATFLRVVGSE-------LIQKYLGDG-----PKLVRELFRVAEE----HAPSI 139 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA---~~~~~~~~~v~~s~-------l~~~~~g~~-----~~~l~~~f~~a~~----~~P~I 139 (317)
-++++|+||+|||+ .++ ...+..++.+.+.. +.+. .|.. .....++++.+++ ..+.+
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 56789999999999 222 22354555553221 1111 1211 1123456666665 34789
Q ss_pred Eeecccccc
Q psy7780 140 VFIDEIDAV 148 (317)
Q Consensus 140 i~iDEiD~l 148 (317)
|+|||+..+
T Consensus 93 ViIDEaQ~l 101 (223)
T 2b8t_A 93 IGIDEVQFF 101 (223)
T ss_dssp EEECSGGGS
T ss_pred EEEecCccC
Confidence 999999865
No 142
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.81 E-value=0.0061 Score=56.47 Aligned_cols=17 Identities=6% Similarity=0.186 Sum_probs=14.2
Q ss_pred hCCceEeeccccccccc
Q psy7780 135 HAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 135 ~~P~Ii~iDEiD~l~~~ 151 (317)
..|.+|+|||+-++...
T Consensus 230 ~~~~llIlDs~ta~ld~ 246 (349)
T 1pzn_A 230 RPVKLLIVDSLTSHFRS 246 (349)
T ss_dssp SCEEEEEEETSSTTHHH
T ss_pred CCCCEEEEeCchHhhhh
Confidence 57999999999988743
No 143
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.76 E-value=0.018 Score=49.50 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhCCceEeeccccccccc
Q psy7780 125 VRELFRVAEEHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 125 l~~~f~~a~~~~P~Ii~iDEiD~l~~~ 151 (317)
+..+...++...+..+++|.+..+...
T Consensus 124 ~~~~~~~~~~~~~~~vviD~~~~l~~~ 150 (251)
T 2zts_A 124 LRYIYRVVKAINAKRLVIDSIPSIALR 150 (251)
T ss_dssp HHHHHHHHHHTTCSEEEEECHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEEcHHHHhhh
Confidence 444555566778899999999988643
No 144
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.64 E-value=0.012 Score=57.32 Aligned_cols=76 Identities=17% Similarity=0.367 Sum_probs=53.0
Q ss_pred Cc-eEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCC--C
Q psy7780 137 PS-IVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE--T 213 (317)
Q Consensus 137 P~-Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~--~ 213 (317)
|- +|+|||+..+.... ..++...+..+...-. . -.+.+|.+|.+|+ .
T Consensus 297 P~ivlvIDE~~~ll~~~-------~~~~~~~l~~Lar~gR----a-------------------~GI~LIlaTQrp~~dv 346 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV-------GKKVEELIARLAQKAR----A-------------------AGIHLVLATQRPSVDV 346 (512)
T ss_dssp CEEEEEEETHHHHHHHH-------HHHHHHHHHHHHHHCG----G-------------------GTEEEEEEESCCCTTT
T ss_pred CcEEEEEeCHHHHHhhh-------hHHHHHHHHHHHHHhh----h-------------------CCcEEEEEecCCcccc
Confidence 54 78999998876421 1233344444433311 1 3577899999987 6
Q ss_pred CCccccCCCcceeEEEeCCCCHHHHHHHHHH
Q psy7780 214 LDPALIRPGRIDRKIEFPLPDEKTKRRIFNI 244 (317)
Q Consensus 214 Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~ 244 (317)
++..++. -|..+|.|...+..+.+.|+..
T Consensus 347 l~~~i~~--n~~~RI~lrv~s~~dsr~ilg~ 375 (512)
T 2ius_A 347 ITGLIKA--NIPTRIAFTVSSKIDSRTILDQ 375 (512)
T ss_dssp SCHHHHH--HCCEEEEECCSSHHHHHHHHSS
T ss_pred ccHHHHh--hcCCeEEEEcCCHHHHHHhcCC
Confidence 8888887 8888999999999998888753
No 145
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.34 E-value=0.0087 Score=52.11 Aligned_cols=34 Identities=29% Similarity=0.259 Sum_probs=23.6
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEech-hhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGS-ELIQK 116 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s-~l~~~ 116 (317)
.++.+|+|+|||. +++...+...+.+... ++...
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q 148 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQ 148 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHH
Confidence 5788999999999 4555666666666544 55543
No 146
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.06 E-value=0.0036 Score=51.77 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=26.8
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGD 120 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~ 120 (317)
+++.|+||+|||+ .+|+.++++|+.. .++.....|.
T Consensus 8 i~l~G~~GsGKst~a~~La~~l~~~~i~~--d~~~~~~~g~ 46 (185)
T 3trf_A 8 IYLIGLMGAGKTSVGSQLAKLTKRILYDS--DKEIEKRTGA 46 (185)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH--HHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEC--hHHHHHHcCC
Confidence 4688999999999 8999999888764 3444444443
No 147
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.06 E-value=0.024 Score=52.57 Aligned_cols=64 Identities=20% Similarity=0.287 Sum_probs=40.4
Q ss_pred hHHHhhhcCCCchh---hhhhcC----CceEEEEech-hhh---------hhhcCCchHHHHHHHHHHHhhCCceEeecc
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----SATFLRVVGS-ELI---------QKYLGDGPKLVRELFRVAEEHAPSIVFIDE 144 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----~~~~~~v~~s-~l~---------~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDE 144 (317)
.+++.||+|+|||| +++..+ +..++.+.-. ++. ....+.....+...+..|-...|.+|++||
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDE 204 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGE 204 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCC
Confidence 57899999999999 555543 3344443211 111 111222233456677888889999999999
Q ss_pred c
Q psy7780 145 I 145 (317)
Q Consensus 145 i 145 (317)
+
T Consensus 205 p 205 (356)
T 3jvv_A 205 M 205 (356)
T ss_dssp C
T ss_pred C
Confidence 8
No 148
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.01 E-value=0.037 Score=52.87 Aligned_cols=65 Identities=17% Similarity=0.137 Sum_probs=39.9
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechhh-------------------hhhhcC-CchHHHHHHHHHHHhh
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSEL-------------------IQKYLG-DGPKLVRELFRVAEEH 135 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l-------------------~~~~~g-~~~~~l~~~f~~a~~~ 135 (317)
.+++.|+||+|||| .+|.. .|..+..+++-.. .....+ .....++..++.++..
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~ 181 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSK 181 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHT
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhC
Confidence 46789999999999 34432 3555555553211 000111 2234456778888877
Q ss_pred CCceEeecccc
Q psy7780 136 APSIVFIDEID 146 (317)
Q Consensus 136 ~P~Ii~iDEiD 146 (317)
.+.+|+||..-
T Consensus 182 ~~DvVIIDTaG 192 (443)
T 3dm5_A 182 GVDIIIVDTAG 192 (443)
T ss_dssp TCSEEEEECCC
T ss_pred CCCEEEEECCC
Confidence 77899999764
No 149
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.89 E-value=0.016 Score=50.83 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=25.2
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSEL 113 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l 113 (317)
+++.|+||+|||| .++..++..++.+++-.+
T Consensus 35 i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp EEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 5789999999999 888888866667776555
No 150
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.86 E-value=0.018 Score=48.86 Aligned_cols=114 Identities=15% Similarity=0.143 Sum_probs=63.5
Q ss_pred hhHHHhhhcCCCchh-hhh-----hcCCceEEEE---ech------hhhhhh-----------cCCc------hHHHHHH
Q psy7780 81 GSELIQKYLGDGPKL-AVA-----NQTSATFLRV---VGS------ELIQKY-----------LGDG------PKLVREL 128 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~-aiA-----~~~~~~~~~v---~~s------~l~~~~-----------~g~~------~~~l~~~ 128 (317)
|-+++|+.+|.|||+ |++ -..|..+..+ .+. .++... .-.. ....+..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 567899999999999 222 2225555555 221 233332 1011 2455667
Q ss_pred HHHHHhhC----CceEeecccccccccccCCCCCchhHHHHHHHHHHHHhcCCCcccccccchhhhcccccccCCCCeEE
Q psy7780 129 FRVAEEHA----PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKV 204 (317)
Q Consensus 129 f~~a~~~~----P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 204 (317)
++.+++.- ..+|+|||+-....-. --.. .-+.+++. .-. .+.-|
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g----~l~~----~ev~~~l~---~Rp---------------------~~~~v 156 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYD----YLPL----EEVISALN---ARP---------------------GHQTV 156 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTT----SSCH----HHHHHHHH---TSC---------------------TTCEE
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCC----CCCH----HHHHHHHH---hCc---------------------CCCEE
Confidence 77776543 6899999997643221 0111 12233333 221 45669
Q ss_pred EEEcCCCCCCCccccCCCcceeEEEeC
Q psy7780 205 IMATNRIETLDPALIRPGRIDRKIEFP 231 (317)
Q Consensus 205 I~tTN~~~~Ld~al~rpgRf~~~I~~~ 231 (317)
|.|+|.+ +++|+. .-|.+-++.
T Consensus 157 IlTGr~a---p~~l~e--~AD~VTem~ 178 (196)
T 1g5t_A 157 IITGRGC---HRDILD--LADTVSELR 178 (196)
T ss_dssp EEECSSC---CHHHHH--HCSEEEECC
T ss_pred EEECCCC---cHHHHH--hCcceeeec
Confidence 9999874 667766 666665554
No 151
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.77 E-value=0.0049 Score=50.02 Aligned_cols=27 Identities=0% Similarity=-0.144 Sum_probs=22.8
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEe
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
+.+.|+||+|||| .+|+.++++++..+
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 3578999999999 88999998887654
No 152
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.75 E-value=0.097 Score=51.14 Aligned_cols=66 Identities=15% Similarity=0.101 Sum_probs=36.6
Q ss_pred EEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHHHHHHhcCCCCCcC--CCHHHHHHhCCCCCHHHHH
Q psy7780 203 KVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAED--VNLQELIMAKDDLSGADIK 273 (317)
Q Consensus 203 ~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~~~~~~~~--~~~~~ia~~t~g~s~~dl~ 273 (317)
.||.||....... .. . .....+.++..+.++-.++|..+....+...+ ....+|++.+.|. |--|+
T Consensus 267 ~ilvTTR~~~v~~-~~-~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~Gl-PLAl~ 334 (549)
T 2a5y_B 267 RCLVTTRDVEISN-AA-S--QTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN-PATLM 334 (549)
T ss_dssp EEEEEESBGGGGG-GC-C--SCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC-HHHHH
T ss_pred EEEEEcCCHHHHH-Hc-C--CCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCC-hHHHH
Confidence 4777776532211 11 1 13357899999999999999988432221010 1245566667664 43333
No 153
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.71 E-value=0.038 Score=49.35 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=12.3
Q ss_pred HhhCCceEeeccccccc
Q psy7780 133 EEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 133 ~~~~P~Ii~iDEiD~l~ 149 (317)
..+.|.+|+|||.-.+.
T Consensus 144 ~~~~p~llilDept~~~ 160 (296)
T 1cr0_A 144 SGLGCDVIILDHISIVV 160 (296)
T ss_dssp HTTCCSEEEEEEEC---
T ss_pred HhcCCCEEEEcCccccC
Confidence 56679999999999875
No 154
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.70 E-value=0.017 Score=50.84 Aligned_cols=33 Identities=9% Similarity=0.113 Sum_probs=25.9
Q ss_pred HHHhhhcCCCchh---hhhhc---CCceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQ---TSATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~l~~ 115 (317)
+++.|+||+|||| .++.. .|..++.++.-.+..
T Consensus 7 Ivl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~ 45 (260)
T 3a4m_A 7 IILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRE 45 (260)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHH
Confidence 5689999999999 77776 788888777655543
No 155
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.63 E-value=0.054 Score=51.73 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=14.7
Q ss_pred hhCCceEeeccccccccc
Q psy7780 134 EHAPSIVFIDEIDAVGTK 151 (317)
Q Consensus 134 ~~~P~Ii~iDEiD~l~~~ 151 (317)
++.|.+|+||++..+...
T Consensus 311 ~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 311 ESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp TTCCCEEEEECGGGSCCS
T ss_pred HcCCCEEEEccHHHhccC
Confidence 467999999999998643
No 156
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.58 E-value=0.017 Score=46.90 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=23.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~ 115 (317)
+.+.|+||+|||| .+|..++..++ ++..+..
T Consensus 7 i~l~G~~GsGKSTl~~~La~~l~~~~i--d~d~~~~ 40 (173)
T 1kag_A 7 IFLVGPMGAGKSTIGRQLAQQLNMEFY--DSDQEIE 40 (173)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTTCEEE--EHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEE--eccHHHH
Confidence 4588999999999 88998887655 4444443
No 157
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.47 E-value=0.0068 Score=49.75 Aligned_cols=25 Identities=24% Similarity=0.453 Sum_probs=21.7
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
+.+.|+||+|||| .+|..++++|+.
T Consensus 7 i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 7 IVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 4578999999999 899999988765
No 158
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.44 E-value=0.0072 Score=49.80 Aligned_cols=26 Identities=19% Similarity=0.339 Sum_probs=22.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+++.|+||+|||+ .+|+.++..++..
T Consensus 14 i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 14 ILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 5689999999999 8899988887654
No 159
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.42 E-value=0.0065 Score=49.46 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=22.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+.+.|+||||||| .+|..+|++++..
T Consensus 10 i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 10 LVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4578999999999 8899999988764
No 160
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.36 E-value=0.0067 Score=50.30 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=21.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+++.|+||+|||| .++..++.+++..
T Consensus 8 I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 5689999999999 8888888877653
No 161
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.36 E-value=0.039 Score=48.94 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=12.6
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.|+||+|||+
T Consensus 32 i~~i~G~~GsGKTt 45 (279)
T 1nlf_A 32 VGALVSPGGAGKSM 45 (279)
T ss_dssp EEEEEESTTSSHHH
T ss_pred EEEEEcCCCCCHHH
Confidence 46789999999999
No 162
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.33 E-value=0.0069 Score=51.00 Aligned_cols=36 Identities=19% Similarity=0.392 Sum_probs=26.8
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLG 119 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g 119 (317)
.+.+.|+||+|||| ++|+.++.+++.. .++.....|
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l~~~~i~~--d~~~~~~~g 65 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKLNVPFIDL--DWYIEERFH 65 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEEEH--HHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc--hHHHHHHhC
Confidence 35789999999999 9999999888654 344443333
No 163
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.30 E-value=0.0059 Score=50.81 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=21.6
Q ss_pred HHHhhhcCCCchh---hhhhc-CCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQ-TSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~-~~~~~~~v 108 (317)
+++.|+||||||+ .+|.. +|++++.+
T Consensus 13 I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 13 ILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 5689999999999 88888 68777654
No 164
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.27 E-value=0.033 Score=53.09 Aligned_cols=49 Identities=14% Similarity=0.038 Sum_probs=28.3
Q ss_pred CCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh---------cCC--CcCHHHHHHHHHHHHh
Q psy7780 255 VNLQELIMAKDDLSGADIKAICTEAGLMALRE---------RRM--KVTNEDFKKSKESVLY 305 (317)
Q Consensus 255 ~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~---------~~~--~it~~d~~~al~~v~~ 305 (317)
.+.+.++.+.-| .+|+..++..|......+ ... ..+.+||.+.++.+.+
T Consensus 283 f~p~~~~~~llg--~gd~~~l~e~~~~~~~~~~~~~~~~k~~~g~~~f~~~d~~~q~~~~~k 342 (433)
T 3kl4_A 283 FNAKRFVSRILG--MGDIESILEKVKGLEEYDKIQKKMEDVMEGKGKLTLRDVYAQIIALRK 342 (433)
T ss_dssp CCHHHHHHHHHC--SSHHHHHHHHHHHC-------------------CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcC--CchHHHHHHHHHHhhhHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Confidence 345666665444 258888887664321111 122 7999999999998764
No 165
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.20 E-value=0.0077 Score=49.74 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=22.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+++.|+||+|||+ .+|..+|++++..
T Consensus 5 I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 4578999999999 8899999887653
No 166
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.18 E-value=0.0088 Score=48.67 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=21.5
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
+++.|+||+|||+ .+|+.++++++.
T Consensus 5 I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 4688999999999 889989988765
No 167
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.14 E-value=0.01 Score=47.88 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=20.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+.+.|+||+|||| .+ +.+|.+++.+
T Consensus 4 I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 3578999999999 77 8888887654
No 168
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.12 E-value=0.098 Score=49.76 Aligned_cols=17 Identities=12% Similarity=0.347 Sum_probs=14.3
Q ss_pred hhCCceEeecccccccc
Q psy7780 134 EHAPSIVFIDEIDAVGT 150 (317)
Q Consensus 134 ~~~P~Ii~iDEiD~l~~ 150 (317)
++.+.+|+||.+..+..
T Consensus 308 ~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 308 QNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HSCCCEEEEECGGGCBC
T ss_pred HcCCCEEEEcChhhcCC
Confidence 46789999999999864
No 169
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.07 E-value=0.0085 Score=49.45 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=20.6
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
+.|.|+||+|||| .+|+.++.+++.
T Consensus 7 I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4688999999999 888888876543
No 170
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.04 E-value=0.0081 Score=49.37 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=17.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFL 106 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~ 106 (317)
+++.|+||+|||| .+|+.++.+++
T Consensus 8 I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 8 IWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 5689999999999 88999998877
No 171
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.00 E-value=0.0093 Score=52.91 Aligned_cols=63 Identities=19% Similarity=0.370 Sum_probs=38.0
Q ss_pred hHHHhhhcCCCchh---hhhhcC----CceEEEEechhh-----------hhhhcCCchHHHHHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQT----SATFLRVVGSEL-----------IQKYLGDGPKLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~----~~~~~~v~~s~l-----------~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iD 143 (317)
.+++.||+|+|||| +++... .-.++.. ...+ ....+|.....++..+..|-...|.+|++|
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~-g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illlD 105 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYINQTKSYHIITI-EDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVG 105 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEE-ESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEES
T ss_pred EEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEc-CCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEeC
Confidence 46789999999999 555433 1222221 1110 011122222456777778877899999999
Q ss_pred cc
Q psy7780 144 EI 145 (317)
Q Consensus 144 Ei 145 (317)
|.
T Consensus 106 Ep 107 (261)
T 2eyu_A 106 EM 107 (261)
T ss_dssp CC
T ss_pred CC
Confidence 97
No 172
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.97 E-value=0.01 Score=50.66 Aligned_cols=31 Identities=13% Similarity=0.225 Sum_probs=23.7
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~ 115 (317)
++|.|+||+|||| .+|+.++.+++. ..+++.
T Consensus 7 I~l~G~~GsGKsT~a~~La~~l~~~~i~--~d~~~~ 40 (220)
T 1aky_A 7 MVLIGPPGAGKGTQAPNLQERFHAAHLA--TGDMLR 40 (220)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCEEEE--HHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCceEEe--hhHHHH
Confidence 4689999999999 889999876654 334443
No 173
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.96 E-value=0.01 Score=49.05 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=23.1
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELI 114 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~ 114 (317)
+++.|+||+|||| .+|+.++.+++ +..++.
T Consensus 6 I~l~G~~GsGKsT~a~~L~~~~~~~~i--~~d~~~ 38 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCARIVEKYGYTHL--SAGELL 38 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEE--eHHHHH
Confidence 4688999999999 78888887664 444444
No 174
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.91 E-value=0.011 Score=48.18 Aligned_cols=25 Identities=12% Similarity=0.040 Sum_probs=18.7
Q ss_pred HHHhhhcCCCchh---hhhh-cCCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVAN-QTSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~-~~~~~~~~ 107 (317)
+++.|+||+|||| .+++ ..+..++.
T Consensus 5 I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred EEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 4688999999999 7777 56654443
No 175
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.90 E-value=0.01 Score=49.20 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=21.8
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+.|.|+||+|||| .+|+.++.+++..
T Consensus 12 I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 12 IFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 5689999999999 8888898876654
No 176
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.89 E-value=0.012 Score=50.45 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=21.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
++|.|+||+|||| .+|+.++.+++..
T Consensus 10 I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 10 AVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp EEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 5689999999999 8899998876653
No 177
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.89 E-value=0.022 Score=47.95 Aligned_cols=18 Identities=11% Similarity=0.097 Sum_probs=13.6
Q ss_pred HHHhhhcCCCchh---hhhhc
Q psy7780 83 ELIQKYLGDGPKL---AVANQ 100 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~ 100 (317)
+.+.||+|+|||| .++..
T Consensus 4 i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHhh
Confidence 3478999999999 55543
No 178
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.80 E-value=0.011 Score=50.43 Aligned_cols=31 Identities=10% Similarity=0.224 Sum_probs=24.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~ 115 (317)
++|.|+||+|||| .+|+.++++++.. .+++.
T Consensus 8 I~l~G~~GsGKsT~a~~La~~l~~~~i~~--d~li~ 41 (217)
T 3be4_A 8 LILIGAPGSGKGTQCEFIKKEYGLAHLST--GDMLR 41 (217)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHCCEEEEH--HHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCceEEeh--hHHHH
Confidence 4688999999999 8999998776654 34443
No 179
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.79 E-value=0.01 Score=49.83 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=21.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+++.|+||+|||| .+|+.++.+++.+
T Consensus 23 I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 23 VLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 5789999999999 8888888876543
No 180
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.76 E-value=0.012 Score=50.92 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=22.1
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
++|.|+||+|||| .+|+++++.++..
T Consensus 19 I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 19 AVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 5789999999999 8999999776553
No 181
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.74 E-value=0.013 Score=49.80 Aligned_cols=26 Identities=8% Similarity=0.163 Sum_probs=21.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+++.|+||+|||| .+|++++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 3578999999999 7888888766554
No 182
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.70 E-value=0.018 Score=47.63 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=25.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSEL 113 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l 113 (317)
+.+.||||+|||| ++|...+...+.+++.++
T Consensus 12 i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp EEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred EEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 4688999999999 888887777788876554
No 183
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.70 E-value=0.0097 Score=52.37 Aligned_cols=29 Identities=17% Similarity=0.084 Sum_probs=24.8
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEech
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGS 111 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s 111 (317)
+++.||||+|||+ ++|.+++..++..+.-
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~~~i~~D~~ 35 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGWPVVALDRV 35 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCEEECCSG
T ss_pred EEEECCCCcCHHHHHHHHHhcCCCeEEeccHH
Confidence 4678999999999 8999999988877654
No 184
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.68 E-value=0.0093 Score=49.20 Aligned_cols=20 Identities=10% Similarity=0.129 Sum_probs=17.3
Q ss_pred HHHhhhcCCCchh---hhhhcCC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS 102 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~ 102 (317)
+++.|+||+|||| .+|..++
T Consensus 6 I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999 8888776
No 185
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.66 E-value=0.015 Score=48.79 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=21.7
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+.|.|+||+|||| .+|+.++.+++..
T Consensus 18 I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 18 IFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 5689999999999 7898998766554
No 186
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.60 E-value=0.013 Score=48.35 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=21.2
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+.|.|+||+|||| .+++.++.+++..
T Consensus 9 I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 9 VFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 5689999999999 8888888766543
No 187
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.58 E-value=0.013 Score=48.79 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=21.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+.+.|+||+|||| .+|+.++.+++..
T Consensus 15 I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 15 IFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 5689999999999 8899888665543
No 188
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.55 E-value=0.012 Score=47.67 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=25.1
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLG 119 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g 119 (317)
+.+.|+||+|||| .+++.++++++. ..++.....|
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~--~d~~~~~~~g 40 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYD--VDEEVQKREG 40 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEEE--HHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEE--CcHHHHHHcC
Confidence 3578999999999 888888987764 3344433333
No 189
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.48 E-value=0.014 Score=49.86 Aligned_cols=30 Identities=10% Similarity=0.232 Sum_probs=23.5
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEEEechhhhh
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~ 115 (317)
+|-||||+||+| .+|+..|++ +++.++++.
T Consensus 4 il~GpPGsGKgTqa~~La~~~g~~--~istGdllR 36 (206)
T 3sr0_A 4 VFLGPPGAGKGTQAKRLAKEKGFV--HISTGDILR 36 (206)
T ss_dssp EEECSTTSSHHHHHHHHHHHHCCE--EEEHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHCCe--EEcHHHHHH
Confidence 567999999999 888888765 566666654
No 190
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.37 E-value=0.014 Score=49.54 Aligned_cols=26 Identities=8% Similarity=0.156 Sum_probs=20.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+++.|+||+|||| .+|++++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 3578999999999 7888888766543
No 191
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.11 E-value=0.051 Score=45.58 Aligned_cols=23 Identities=9% Similarity=0.183 Sum_probs=18.5
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
.+.|++|+|||| .+|. +|.+++.
T Consensus 6 ~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 6 GLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 478999999999 6766 8877664
No 192
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.10 E-value=0.02 Score=51.33 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=24.2
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEEEechhh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLRVVGSEL 113 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l 113 (317)
.+++.||||+|||| .++.+++..++.|++-.+
T Consensus 35 livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 36789999999999 788777545667776444
No 193
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.07 E-value=0.016 Score=49.28 Aligned_cols=26 Identities=4% Similarity=-0.049 Sum_probs=21.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
++|.|+||+|||| .+|+.++.+++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 3578999999999 8888888766543
No 194
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.02 E-value=0.013 Score=49.99 Aligned_cols=25 Identities=8% Similarity=0.106 Sum_probs=20.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
++|.|+||+|||| .+|+.++..++.
T Consensus 8 I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 8 VMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 4688999999999 899999875543
No 195
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.95 E-value=0.019 Score=49.35 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=23.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~ 115 (317)
++|.|+||+|||| .+|+.++.+++ +..+++.
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i--~~dd~~r 36 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHI--ESGGIFR 36 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEE--EHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEE--chHHHHH
Confidence 3578999999999 88888887554 4445443
No 196
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.84 E-value=0.013 Score=58.06 Aligned_cols=67 Identities=15% Similarity=0.168 Sum_probs=38.5
Q ss_pred hHHHhhhcCCCchh---hhh---hcCCceEEEEechhh----hhhhcCCchHHHHHHHHHHH---------hhCCceEee
Q psy7780 82 SELIQKYLGDGPKL---AVA---NQTSATFLRVVGSEL----IQKYLGDGPKLVRELFRVAE---------EHAPSIVFI 142 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA---~~~~~~~~~v~~s~l----~~~~~g~~~~~l~~~f~~a~---------~~~P~Ii~i 142 (317)
..++.|+||||||+ +++ ...+..+..+..+.- +....|.....+..++.... .....+|+|
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~~dvlII 285 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAPYDLLIV 285 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCSCSEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhcccccCCEEEE
Confidence 46789999999998 333 344666666644332 22223333444555442111 112479999
Q ss_pred cccccc
Q psy7780 143 DEIDAV 148 (317)
Q Consensus 143 DEiD~l 148 (317)
||+..+
T Consensus 286 DEasml 291 (574)
T 3e1s_A 286 DEVSMM 291 (574)
T ss_dssp CCGGGC
T ss_pred cCccCC
Confidence 998765
No 197
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=92.78 E-value=0.018 Score=48.28 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
+++.|+||+|||| .++..++..++.
T Consensus 21 I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 21 IVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 5689999999999 888888877665
No 198
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.77 E-value=0.066 Score=53.50 Aligned_cols=14 Identities=21% Similarity=0.259 Sum_probs=12.3
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..|++||||||||+
T Consensus 207 ~~lI~GPPGTGKT~ 220 (646)
T 4b3f_X 207 LAIIHGPPGTGKTT 220 (646)
T ss_dssp EEEEECCTTSCHHH
T ss_pred ceEEECCCCCCHHH
Confidence 35789999999998
No 199
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.69 E-value=0.022 Score=46.95 Aligned_cols=27 Identities=7% Similarity=-0.112 Sum_probs=22.3
Q ss_pred HHHhhhcCCCchh---hhhhcC---CceEEEEe
Q psy7780 83 ELIQKYLGDGPKL---AVANQT---SATFLRVV 109 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~ 109 (317)
+.+.|+||+|||| .+++.+ |++++..+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3578999999999 888877 88888765
No 200
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.65 E-value=0.026 Score=52.68 Aligned_cols=66 Identities=21% Similarity=0.386 Sum_probs=38.7
Q ss_pred hhHHHhhhcCCCchh---hhhhcC----CceEEEEech-hh---------hhhhcCCchHHHHHHHHHHHhhCCceEeec
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT----SATFLRVVGS-EL---------IQKYLGDGPKLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~----~~~~~~v~~s-~l---------~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iD 143 (317)
+.+++.||+|+|||| +++... .-.++.+... ++ .+..+|.....++..+..+-...|.+|++|
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~illd 216 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFVG 216 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEEEC
Confidence 357899999999999 555433 2233333211 10 000112222345566667777789999999
Q ss_pred ccc
Q psy7780 144 EID 146 (317)
Q Consensus 144 EiD 146 (317)
|+-
T Consensus 217 E~~ 219 (372)
T 2ewv_A 217 EMR 219 (372)
T ss_dssp CCC
T ss_pred CCC
Confidence 973
No 201
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.56 E-value=0.021 Score=47.56 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=20.8
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
.+.|+||+|||| .+|+.++..++.
T Consensus 4 ~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 4 AIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 578999999999 899999987664
No 202
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.41 E-value=0.027 Score=47.03 Aligned_cols=27 Identities=7% Similarity=0.046 Sum_probs=22.4
Q ss_pred HHHhhhcCCCchh---hhhhcC-CceEEEEe
Q psy7780 83 ELIQKYLGDGPKL---AVANQT-SATFLRVV 109 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~-~~~~~~v~ 109 (317)
+.|.|+||+|||| .+++.+ |.+++.+.
T Consensus 7 I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4688999999999 888888 57777665
No 203
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.40 E-value=0.025 Score=49.33 Aligned_cols=32 Identities=13% Similarity=0.191 Sum_probs=24.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
+++.|+||+|||| .++++++.+++ +..+++..
T Consensus 32 I~l~G~~GsGKsT~a~~L~~~~g~~~i--s~~~~~r~ 66 (243)
T 3tlx_A 32 YIFLGAPGSGKGTQSLNLKKSHCYCHL--STGDLLRE 66 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEE--ecHHHHHH
Confidence 5689999999999 78888876655 45555444
No 204
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.32 E-value=0.02 Score=49.32 Aligned_cols=34 Identities=9% Similarity=0.120 Sum_probs=25.6
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYL 118 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~ 118 (317)
+++-||||+||+| .+|+.+++ ..++..+++...+
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~g~--~hIstGdllR~~i 68 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKFHF--NHLSSGDLLRAEV 68 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHHCC--EEECHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC--ceEcHHHHHHHHH
Confidence 4578999999999 78888875 4567777765433
No 205
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.30 E-value=0.028 Score=46.20 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=24.9
Q ss_pred HHHhhhcCCCchh---hhhhcC---CceEEEEechhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQT---SATFLRVVGSEL 113 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l 113 (317)
+.|.|++|+|||| .++..+ |.+++.+++-.+
T Consensus 8 i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 4578999999999 777776 888988875443
No 206
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=92.29 E-value=0.016 Score=47.72 Aligned_cols=32 Identities=9% Similarity=0.074 Sum_probs=22.4
Q ss_pred HHHhhhcCCCchh---hhhhcCC---ceEEEEechhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS---ATFLRVVGSELI 114 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~---~~~~~v~~s~l~ 114 (317)
+++.|+||+|||| .+++.++ .++..++..++.
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~ 41 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFM 41 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHH
Confidence 4688999999999 7777665 345555554443
No 207
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.29 E-value=0.3 Score=44.85 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=21.5
Q ss_pred CCceEeeccccccccccc-CCCCCchhHHHHHHHHHHHH
Q psy7780 136 APSIVFIDEIDAVGTKRY-DSNSGGEREIQRTMLELLNQ 173 (317)
Q Consensus 136 ~P~Ii~iDEiD~l~~~r~-~~~~~~~~~~~~~l~~ll~~ 173 (317)
.+.+|+||-+..+..... .+....-.++.+.|..+-.+
T Consensus 156 g~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAke 194 (338)
T 4a1f_A 156 ELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARE 194 (338)
T ss_dssp TEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 578999999998754321 11122234445555555555
No 208
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.25 E-value=0.032 Score=51.10 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=25.6
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEech
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGS 111 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s 111 (317)
+++.||+|+|||+ .+|++++..++.++.-
T Consensus 8 i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 8 IFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 5689999999999 8999999999998754
No 209
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.16 E-value=0.027 Score=45.92 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=20.1
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
+.+.|+||+|||| .++..+|..++.
T Consensus 11 i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 4688999999999 788877866554
No 210
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.06 E-value=0.031 Score=46.25 Aligned_cols=26 Identities=12% Similarity=0.070 Sum_probs=20.7
Q ss_pred HHhhhcCCCchh---hhhhcC---CceEEEEe
Q psy7780 84 LIQKYLGDGPKL---AVANQT---SATFLRVV 109 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~---~~~~~~v~ 109 (317)
.+.|+||+|||| .+++.+ |.+++...
T Consensus 4 ~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 4 TFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 578999999999 778777 88887654
No 211
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.01 E-value=0.12 Score=43.69 Aligned_cols=63 Identities=16% Similarity=0.105 Sum_probs=34.4
Q ss_pred HHHhhhcCCCchh----hhh--hcCCceEEEEech---h----hhhhhcCC-----chHHHHHHHHHHHhhCCceEeecc
Q psy7780 83 ELIQKYLGDGPKL----AVA--NQTSATFLRVVGS---E----LIQKYLGD-----GPKLVRELFRVAEEHAPSIVFIDE 144 (317)
Q Consensus 83 ~Ll~G~pGtGKT~----aiA--~~~~~~~~~v~~s---~----l~~~~~g~-----~~~~l~~~f~~a~~~~P~Ii~iDE 144 (317)
++++|+.|+|||+ ++. .+.+..++.+++. . +.+.. |. ......++++..+ ...+|+|||
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~-g~~~~A~~~~~~~d~~~~~~--~~DvIlIDE 99 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEAL--GVAVIGIDE 99 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHH-HHHSEEEEESSGGGGHHHHH--TCSEEEESS
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhcc-CCcccceecCCHHHHHHhcc--CCCEEEEEc
Confidence 5689999999997 322 2335666666533 1 11110 00 0011223333322 247999999
Q ss_pred cccc
Q psy7780 145 IDAV 148 (317)
Q Consensus 145 iD~l 148 (317)
+.-+
T Consensus 100 aQFf 103 (195)
T 1w4r_A 100 GQFF 103 (195)
T ss_dssp GGGC
T ss_pred hhhh
Confidence 9877
No 212
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.81 E-value=0.074 Score=44.43 Aligned_cols=44 Identities=18% Similarity=0.304 Sum_probs=27.1
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHH
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFR 130 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~ 130 (317)
.+.|++|+|||| .+|. +|++++.. .++...........+..+++
T Consensus 5 ~i~G~~GsGKSTl~~~L~~-~g~~~i~~--d~~~~~~~~~~~~~~~~i~~ 51 (204)
T 2if2_A 5 GLTGNIGCGKSTVAQMFRE-LGAYVLDA--DKLIHSFYRKGHPVYEEVVK 51 (204)
T ss_dssp EEEECTTSSHHHHHHHHHH-TTCEEEEH--HHHHHGGGSSSSHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHH-CCCEEEEc--cHHHHHHhcCCHHHHHHHHH
Confidence 478999999999 8888 88776654 34443322222233444443
No 213
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.65 E-value=0.32 Score=46.34 Aligned_cols=28 Identities=11% Similarity=-0.070 Sum_probs=19.7
Q ss_pred hHHHhhhcCCCchh-------hhhhcCCceEEEEec
Q psy7780 82 SELIQKYLGDGPKL-------AVANQTSATFLRVVG 110 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~-------aiA~~~~~~~~~v~~ 110 (317)
-.++.|+||+|||+ .+|.. |.++..++.
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~~-g~~vl~fSl 233 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSL 233 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHT-TCEEEEECS
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHc-CCEEEEEEC
Confidence 47889999999998 22322 667766654
No 214
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=91.57 E-value=0.041 Score=52.64 Aligned_cols=67 Identities=10% Similarity=0.194 Sum_probs=37.5
Q ss_pred hHHHhhhcCCCchh---hhhhcC---Cc-eEEEEechhh----hhhhcCCchHHHHHHHHHHH----------------h
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SA-TFLRVVGSEL----IQKYLGDGPKLVRELFRVAE----------------E 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~-~~~~v~~s~l----~~~~~g~~~~~l~~~f~~a~----------------~ 134 (317)
+.++.|+||||||+ +++..+ +. .++.+..+.. +....|.....++.++.... .
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~ 126 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDL 126 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccc
Confidence 57899999999999 333333 33 4555544322 22223444444555443110 0
Q ss_pred hCCceEeecccccc
Q psy7780 135 HAPSIVFIDEIDAV 148 (317)
Q Consensus 135 ~~P~Ii~iDEiD~l 148 (317)
....+|++||+..+
T Consensus 127 ~~~~~iiiDE~~~~ 140 (459)
T 3upu_A 127 AKCRVLICDEVSMY 140 (459)
T ss_dssp SSCSEEEESCGGGC
T ss_pred cCCCEEEEECchhC
Confidence 12468999999865
No 215
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=91.55 E-value=0.085 Score=48.26 Aligned_cols=66 Identities=11% Similarity=0.196 Sum_probs=42.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCC--ceEEEEechhhhh-----h---hcCCchHHHHHHHHHHHhhCCceEeeccccc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS--ATFLRVVGSELIQ-----K---YLGDGPKLVRELFRVAEEHAPSIVFIDEIDA 147 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~--~~~~~v~~s~l~~-----~---~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~ 147 (317)
.+++.||+|+|||| +++.... ...+.+....... . ++..+....+..+..|-...|.+|++||.-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 46788999999999 6766653 2345555432111 0 1100233556677788888899999999753
No 216
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.50 E-value=0.35 Score=46.58 Aligned_cols=29 Identities=3% Similarity=-0.213 Sum_probs=19.4
Q ss_pred hHHHhhhcCCCchh-------hhhhcCCceEEEEec
Q psy7780 82 SELIQKYLGDGPKL-------AVANQTSATFLRVVG 110 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~-------aiA~~~~~~~~~v~~ 110 (317)
..++.|+||+|||+ .+|...|.++..++.
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred EEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 56789999999998 222222556666654
No 217
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.34 E-value=0.34 Score=43.79 Aligned_cols=14 Identities=21% Similarity=0.024 Sum_probs=12.6
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
-.++.|+||+|||+
T Consensus 70 l~li~G~pG~GKTt 83 (315)
T 3bh0_A 70 FVLIAARPSMGKTA 83 (315)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEEeCCCCCHHH
Confidence 46889999999998
No 218
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.31 E-value=0.048 Score=46.29 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=20.5
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
+.+.|+||+|||| .++..++++++.
T Consensus 8 i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 8 ITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 3578999999999 888888876654
No 219
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.26 E-value=0.039 Score=46.27 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=19.5
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFL 106 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~ 106 (317)
+.+.|+||+|||| +++..+|..++
T Consensus 32 i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 32 VVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 4578999999999 88888876544
No 220
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.20 E-value=0.17 Score=41.53 Aligned_cols=32 Identities=13% Similarity=0.034 Sum_probs=22.4
Q ss_pred HHHhhhcCCCchh---hhhhcC---CceEEEEechhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQT---SATFLRVVGSELI 114 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~ 114 (317)
+.+.|+||+|||| .+|..+ +..+..+++..+.
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~ 53 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWAR 53 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHH
Confidence 5689999999999 677665 3445556554443
No 221
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.17 E-value=0.42 Score=46.39 Aligned_cols=43 Identities=16% Similarity=0.243 Sum_probs=25.2
Q ss_pred HHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHh
Q psy7780 127 ELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQL 174 (317)
Q Consensus 127 ~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l 174 (317)
..........|.+|+|||.-++.+.. +-+....+.+..++..+
T Consensus 129 ~~~~~LS~g~~~~lilDe~t~~~~~~-----~lD~~~~~~l~~ll~~l 171 (525)
T 1tf7_A 129 RINYAIQKYRARRVSIDSVTSVFQQY-----DASSVVRRELFRLVARL 171 (525)
T ss_dssp HHHHHHHHHTCSEEEEECSTTTSTTT-----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECCHHHHHHhc-----CCHHHHHHHHHHHHHHH
Confidence 33444455778999999987765431 12233445555666555
No 222
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=90.64 E-value=0.58 Score=45.37 Aligned_cols=48 Identities=10% Similarity=0.185 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHhc
Q psy7780 122 PKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLD 175 (317)
Q Consensus 122 ~~~l~~~f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ld 175 (317)
....+.++..+....|.+|+||=+-.+-... . ..+....+.+++..+.
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~----~--~~~~~~~i~~ll~~l~ 404 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALARGV----S--NNAFRQFVIGVTGYAK 404 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSSS----C--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHHhhC----C--hHHHHHHHHHHHHHHH
Confidence 3456667777778889999999666554321 1 1224455556665543
No 223
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=90.63 E-value=0.51 Score=33.37 Aligned_cols=68 Identities=18% Similarity=0.199 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhc
Q psy7780 236 KTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKK 308 (317)
Q Consensus 236 ~~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~ 308 (317)
.-...|++..+....+..+ ...+... +.---+..+..+|...|..+++.+|+.+|+..|++.++.+++
T Consensus 8 A~V~rI~K~~~p~~~is~~--A~~~i~~---~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ll~k~~ 75 (76)
T 3b0c_W 8 GTLRKIIKKHKPHLRLAAN--TDLLVHL---SFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVILKKSR 75 (76)
T ss_dssp HHHHHHHHHHCTTCEECTT--HHHHHHH---HHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHhCCCCccCHH--HHHHHHH---HHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhC
Confidence 3445677755554444322 2333222 122236677888999999999999999999999999998765
No 224
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.45 E-value=0.052 Score=47.31 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
+.+.||||+|||| .+|+.++++++.
T Consensus 12 i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 12 VAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4578999999999 899999877654
No 225
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.34 E-value=0.21 Score=45.26 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=36.2
Q ss_pred hHHHhhhcCCCchh---hhhhc---CCceEEEEechh-----------hhhh---------hcCCchHHHHHHHHHHHhh
Q psy7780 82 SELIQKYLGDGPKL---AVANQ---TSATFLRVVGSE-----------LIQK---------YLGDGPKLVRELFRVAEEH 135 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s~-----------l~~~---------~~g~~~~~l~~~f~~a~~~ 135 (317)
.+++.|++|+|||| .+|.. .+..+..+++-. +... ..++....+...+..+...
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a~~~ 185 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHALAR 185 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHHHhc
Confidence 46789999999999 33332 244444443311 1000 0112222334456666777
Q ss_pred CCceEeecccc
Q psy7780 136 APSIVFIDEID 146 (317)
Q Consensus 136 ~P~Ii~iDEiD 146 (317)
.|.+|++|+.-
T Consensus 186 ~~dvvIiDtpg 196 (306)
T 1vma_A 186 NKDVVIIDTAG 196 (306)
T ss_dssp TCSEEEEEECC
T ss_pred CCCEEEEECCC
Confidence 88999999764
No 226
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.22 E-value=0.055 Score=47.58 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=22.6
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+.|.|+||+|||| .+|..++.+|+..
T Consensus 51 i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 51 MYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 5688999999999 8999999887764
No 227
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=90.20 E-value=0.19 Score=41.91 Aligned_cols=31 Identities=13% Similarity=0.162 Sum_probs=22.6
Q ss_pred HHHhhhcCCCchh---hhhhcC---CceEEEEechhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQT---SATFLRVVGSEL 113 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l 113 (317)
+.+.||+|+|||| ++|..+ |...+.+++..+
T Consensus 28 i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 28 IWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 4588999999999 777776 555456665444
No 228
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=90.15 E-value=0.79 Score=43.95 Aligned_cols=14 Identities=14% Similarity=-0.033 Sum_probs=12.3
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
-.+|.|+||+|||+
T Consensus 153 ~~~i~G~sGvGKTt 166 (473)
T 1sky_E 153 KIGLFGGAGVGKTV 166 (473)
T ss_dssp EEEEECCSSSCHHH
T ss_pred EEEEECCCCCCccH
Confidence 45788999999998
No 229
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.04 E-value=0.11 Score=48.96 Aligned_cols=26 Identities=8% Similarity=0.066 Sum_probs=21.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
.+++.|+||+|||| .+++.+++.++.
T Consensus 260 lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 36689999999999 788888876554
No 230
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=89.94 E-value=0.078 Score=44.61 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=21.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+.+.|++|||||| .+++.+|++++..
T Consensus 15 IgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 3578999999999 7787778877663
No 231
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.89 E-value=0.043 Score=45.85 Aligned_cols=21 Identities=10% Similarity=0.037 Sum_probs=17.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSA 103 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~ 103 (317)
+.+.|+||+|||| .+|+.++.
T Consensus 7 I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4689999999999 88887765
No 232
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.84 E-value=0.071 Score=44.43 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=21.8
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+.+.|++|+|||+ .+|..+|++++..
T Consensus 5 i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 5 VTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 3478999999999 8899899877764
No 233
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=89.61 E-value=0.28 Score=40.69 Aligned_cols=14 Identities=29% Similarity=0.285 Sum_probs=11.9
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.+|+|+|||.
T Consensus 40 ~~li~~~TGsGKT~ 53 (207)
T 2gxq_A 40 DLIGQARTGTGKTL 53 (207)
T ss_dssp CEEEECCTTSCHHH
T ss_pred CEEEECCCCChHHH
Confidence 35688999999998
No 234
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.36 E-value=0.02 Score=48.19 Aligned_cols=21 Identities=5% Similarity=-0.007 Sum_probs=17.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSA 103 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~ 103 (317)
+.+.|+||+|||| .+++.++.
T Consensus 13 I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 13 IVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5689999999999 77776654
No 235
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=89.35 E-value=0.088 Score=44.56 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=19.7
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+.+.|++|+|||| .++. +|.+++..
T Consensus 7 I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 7 VALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 4588999999999 7776 88776653
No 236
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=89.08 E-value=0.27 Score=47.88 Aligned_cols=34 Identities=6% Similarity=-0.041 Sum_probs=24.4
Q ss_pred HHHhhhcCCCchh---hhhhcC---CceEEEEechhhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQT---SATFLRVVGSELIQK 116 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l~~~ 116 (317)
+++.|+||+|||+ .+|..+ +.....++..++...
T Consensus 38 IvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~ 77 (520)
T 2axn_A 38 IVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRRE 77 (520)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHH
Confidence 5789999999999 788777 445555665555443
No 237
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.01 E-value=0.084 Score=48.55 Aligned_cols=30 Identities=10% Similarity=0.079 Sum_probs=26.3
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSE 112 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~ 112 (317)
+++.||+|+|||+ .+|+.++..++..+.-+
T Consensus 43 IvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 43 LVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp EEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 5689999999999 99999999998877654
No 238
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=88.87 E-value=0.46 Score=41.23 Aligned_cols=64 Identities=14% Similarity=0.052 Sum_probs=33.2
Q ss_pred hHHHhhhcCCCchh------hhhhcCCceEEEEech-------hhhhhhcCCc-----hHHHHHHHHHHHhhCCceEeec
Q psy7780 82 SELIQKYLGDGPKL------AVANQTSATFLRVVGS-------ELIQKYLGDG-----PKLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~------aiA~~~~~~~~~v~~s-------~l~~~~~g~~-----~~~l~~~f~~a~~~~P~Ii~iD 143 (317)
-++++|+.|+|||+ .-+...|..++.+... .+.+. .|.. -....++++.+. ...+|+||
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr-~G~~~~a~~i~~~~di~~~~~--~~dvViID 97 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTH-DRNTMEALPACLLRDVAQEAL--GVAVIGID 97 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHHT--TCSEEEES
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhh-cCCeeEEEecCCHHHHHHHhc--cCCEEEEE
Confidence 46789999999998 2233445555544321 11111 0110 001123455553 34799999
Q ss_pred ccccc
Q psy7780 144 EIDAV 148 (317)
Q Consensus 144 EiD~l 148 (317)
|+.-+
T Consensus 98 EaQF~ 102 (234)
T 2orv_A 98 EGQFF 102 (234)
T ss_dssp SGGGC
T ss_pred chhhh
Confidence 99876
No 239
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=88.81 E-value=0.12 Score=45.12 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=23.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELI 114 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~ 114 (317)
+.+.||+|+|||| .+|+.+|..++ +...+.
T Consensus 30 I~I~G~~GsGKSTl~k~La~~Lg~~~~--d~g~i~ 62 (252)
T 4e22_A 30 ITVDGPSGAGKGTLCKALAESLNWRLL--DSGAIY 62 (252)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCEEE--EHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCcC--CCCcee
Confidence 4588999999999 89999998765 444443
No 240
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=88.75 E-value=0.51 Score=49.07 Aligned_cols=14 Identities=14% Similarity=-0.064 Sum_probs=12.4
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
...+.||.|+||||
T Consensus 675 i~~ItGPNGaGKST 688 (918)
T 3thx_B 675 VMIITGPNMGGKSS 688 (918)
T ss_dssp EEEEESCCCHHHHH
T ss_pred EEEEECCCCCchHH
Confidence 46789999999999
No 241
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=88.68 E-value=0.49 Score=39.12 Aligned_cols=14 Identities=21% Similarity=0.128 Sum_probs=11.9
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.+|+|+|||.
T Consensus 42 ~~lv~apTGsGKT~ 55 (206)
T 1vec_A 42 DILARAKNGTGKSG 55 (206)
T ss_dssp CEEEECCSSSTTHH
T ss_pred CEEEECCCCCchHH
Confidence 35688999999997
No 242
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.55 E-value=0.088 Score=46.89 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=18.8
Q ss_pred HHHhhhcCCCchh---hhhhc-CCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQ-TSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~-~~~~~~~ 107 (317)
+++.|+||+|||| .++.. .++.++.
T Consensus 5 I~l~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (301)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEec
Confidence 4689999999999 77775 3655543
No 243
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=88.51 E-value=0.13 Score=43.37 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=21.6
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+.+.|+||+|||+ .+|..+|++++..
T Consensus 6 i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 6 IALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 3578999999999 8889899877653
No 244
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=88.49 E-value=0.066 Score=46.41 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=19.7
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFL 106 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~ 106 (317)
+.+.||||+|||| .+|+.+|...+
T Consensus 30 i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 30 AVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 5688999999999 88888876543
No 245
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=88.46 E-value=0.56 Score=42.07 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=33.5
Q ss_pred hHHHhhhcCCCchh---hhh----hcCCceEEEEechh-------hhhhh---------cCCchHHHHHHHHHHHhhCCc
Q psy7780 82 SELIQKYLGDGPKL---AVA----NQTSATFLRVVGSE-------LIQKY---------LGDGPKLVRELFRVAEEHAPS 138 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA----~~~~~~~~~v~~s~-------l~~~~---------~g~~~~~l~~~f~~a~~~~P~ 138 (317)
.+.+.|++|+|||| .+| ...|..+..+++.. -+..| .......++..+..+ ..|.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~--~~~d 184 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF--SEYD 184 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG--GGSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh--cCCC
Confidence 56789999999999 333 23455555554321 01111 112233455555543 5578
Q ss_pred eEeec
Q psy7780 139 IVFID 143 (317)
Q Consensus 139 Ii~iD 143 (317)
+|+||
T Consensus 185 lvIiD 189 (296)
T 2px0_A 185 HVFVD 189 (296)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99999
No 246
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=88.43 E-value=0.18 Score=42.01 Aligned_cols=14 Identities=21% Similarity=0.171 Sum_probs=12.3
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.+|+|+|||+
T Consensus 50 ~~li~~~tGsGKT~ 63 (216)
T 3b6e_A 50 NIIICLPTGSGKTR 63 (216)
T ss_dssp CEEEECSCHHHHHH
T ss_pred CEEEEcCCCCCHHH
Confidence 45789999999998
No 247
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=88.42 E-value=0.12 Score=42.78 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=20.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v 108 (317)
+.+.|++|+|||| .+|+. |++++..
T Consensus 11 I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp EEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 4588999999999 78877 8776653
No 248
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.29 E-value=0.085 Score=45.83 Aligned_cols=30 Identities=7% Similarity=0.154 Sum_probs=22.8
Q ss_pred HhhhcCCCchh---hhhhcCCceEEEEechhhhhh
Q psy7780 85 IQKYLGDGPKL---AVANQTSATFLRVVGSELIQK 116 (317)
Q Consensus 85 l~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~~ 116 (317)
+.|+||+|||| .+|+.++++++ +..+++..
T Consensus 13 ~~G~pGsGKsT~a~~L~~~~g~~~i--s~gdllR~ 45 (230)
T 3gmt_A 13 LLGAPGAGKGTQANFIKEKFGIPQI--STGDMLRA 45 (230)
T ss_dssp EECCTTSCHHHHHHHHHHHHTCCEE--CHHHHHHH
T ss_pred eECCCCCCHHHHHHHHHHHhCCCee--echHHHHH
Confidence 67999999999 78888887655 55555543
No 249
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=88.09 E-value=0.029 Score=47.18 Aligned_cols=20 Identities=5% Similarity=0.034 Sum_probs=16.5
Q ss_pred HHHhhhcCCCchh---hhhhcCC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS 102 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~ 102 (317)
+.+.|+||+|||| .+++.++
T Consensus 12 I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 12 IVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 5689999999999 7777654
No 250
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=87.89 E-value=0.19 Score=50.01 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=26.4
Q ss_pred HHHhhhcCCCchh---hhhhcC---CceEEEEechhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQT---SATFLRVVGSEL 113 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s~l 113 (317)
++|.|+||+|||| ++++.+ |.+++.+++-.+
T Consensus 55 IvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 55 VWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 6799999999999 888888 999999875444
No 251
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=87.86 E-value=0.18 Score=48.97 Aligned_cols=65 Identities=17% Similarity=0.296 Sum_probs=41.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCC--ceEEEEechh-hhh---h--------hcCCchHHHHHHHHHHHhhCCceEeecc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS--ATFLRVVGSE-LIQ---K--------YLGDGPKLVRELFRVAEEHAPSIVFIDE 144 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~--~~~~~v~~s~-l~~---~--------~~g~~~~~l~~~f~~a~~~~P~Ii~iDE 144 (317)
..++.||+|+|||| +++.... ...+.+.... +.- . ..+.....+.++...+..+.|.++++.|
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivgE 341 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVGE 341 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEESC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeCC
Confidence 46789999999999 6666663 3455554432 110 0 0112223455666667778899999998
Q ss_pred cc
Q psy7780 145 ID 146 (317)
Q Consensus 145 iD 146 (317)
+-
T Consensus 342 ir 343 (511)
T 2oap_1 342 VR 343 (511)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 252
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.58 E-value=0.11 Score=47.23 Aligned_cols=30 Identities=7% Similarity=0.052 Sum_probs=25.2
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSE 112 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~ 112 (317)
+++.||+|+|||+ .+|+.++..++..+.-+
T Consensus 13 i~i~GptgsGKt~la~~La~~~~~~iis~Ds~q 45 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKILPVELISVDSAL 45 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSCEEEEECCTTT
T ss_pred EEEECCCccCHHHHHHHHHHhCCCcEEeccccc
Confidence 4688999999999 89999998888876543
No 253
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=87.56 E-value=0.13 Score=43.39 Aligned_cols=30 Identities=23% Similarity=0.392 Sum_probs=24.6
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l~~ 115 (317)
+.+.|++|||||+ .+|+.+|++|+. .+++.
T Consensus 9 I~i~g~~GsGk~ti~~~la~~lg~~~~D---~~~~~ 41 (201)
T 3fdi_A 9 IAIGREFGSGGHLVAKKLAEHYNIPLYS---KELLD 41 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTTCCEEC---HHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHhCcCEEC---HHHHH
Confidence 3478999999999 899999999884 55543
No 254
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.52 E-value=0.14 Score=44.00 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=21.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
+.+.|++|+|||+ .+|..+|++++.
T Consensus 19 i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 19 IAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 4588999999999 888889987654
No 255
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=87.44 E-value=0.15 Score=44.33 Aligned_cols=32 Identities=3% Similarity=-0.024 Sum_probs=24.4
Q ss_pred HHHhhhcCCCchh---hhhhcCCce--------EEEEechhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSAT--------FLRVVGSELI 114 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~--------~~~v~~s~l~ 114 (317)
+.+.|+||+|||| .++..++.+ ...++..++.
T Consensus 25 I~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 25 IGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 5689999999999 788888876 3356665554
No 256
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=87.38 E-value=0.14 Score=46.74 Aligned_cols=30 Identities=10% Similarity=-0.014 Sum_probs=24.6
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSE 112 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~ 112 (317)
+.+.||+|+|||+ .+|+.++..++..+.-+
T Consensus 6 i~i~GptgsGKt~la~~La~~~~~~iis~Ds~Q 38 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQ 38 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTTEEEEECCGGG
T ss_pred EEEECCCcCCHHHHHHHHHHhCccceeecCccc
Confidence 4578999999999 89999988887776543
No 257
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=87.31 E-value=0.13 Score=48.99 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=13.0
Q ss_pred HHHhhhcCCCchhhhh
Q psy7780 83 ELIQKYLGDGPKLAVA 98 (317)
Q Consensus 83 ~Ll~G~pGtGKT~aiA 98 (317)
.++.|+||||||+.+.
T Consensus 164 ~~I~G~aGsGKTt~I~ 179 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEIL 179 (446)
T ss_dssp EEEEECTTSCHHHHHH
T ss_pred EEEEcCCCCCHHHHHH
Confidence 4689999999999333
No 258
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=86.86 E-value=0.15 Score=42.69 Aligned_cols=25 Identities=8% Similarity=0.094 Sum_probs=19.3
Q ss_pred HHHhhhcCCCchh---hhhhcC-CceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQT-SATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~-~~~~~~ 107 (317)
+.+.|+||+|||| .++..+ ++.++.
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 4588999999999 777776 555544
No 259
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=86.66 E-value=0.018 Score=53.34 Aligned_cols=25 Identities=8% Similarity=0.179 Sum_probs=21.8
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
++|.|+||+|||+ ++|..++++|+.
T Consensus 27 i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 4689999999999 899999888855
No 260
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=86.48 E-value=0.13 Score=45.74 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=20.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSEL 113 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l 113 (317)
+.+.|+||+|||| .++ ++|++++. +..+
T Consensus 78 I~I~G~~GSGKSTva~~La-~lg~~~id--~D~~ 108 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLK-NLGAYIID--SDHL 108 (281)
T ss_dssp EEEEECTTSCHHHHHHHHH-HHTCEEEE--HHHH
T ss_pred EEEECCCCCCHHHHHHHHH-HCCCcEEe--hhHH
Confidence 5689999999999 666 57876654 4444
No 261
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=86.44 E-value=0.91 Score=48.02 Aligned_cols=41 Identities=10% Similarity=0.090 Sum_probs=23.3
Q ss_pred EEEEcCCCCCCCccccCCCcceeEEEeC----CCCHHHHHHHHHHHhc
Q psy7780 204 VIMATNRIETLDPALIRPGRIDRKIEFP----LPDEKTKRRIFNIHTS 247 (317)
Q Consensus 204 vI~tTN~~~~Ld~al~rpgRf~~~I~~~----~P~~~~r~~Il~~~l~ 247 (317)
||.||....... .+. +.-...+.++ .++.++-.++|..++.
T Consensus 268 ILVTTRd~~Va~-~l~--g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g 312 (1221)
T 1vt4_I 268 ILLTTRFKQVTD-FLS--AATTTHISLDHHSMTLTPDEVKSLLLKYLD 312 (1221)
T ss_dssp EEEECSCSHHHH-HHH--HHSSCEEEECSSSSCCCHHHHHHHHHHHHC
T ss_pred EEEeccChHHHH-hcC--CCeEEEecCccccCCcCHHHHHHHHHHHcC
Confidence 777776543221 111 0101345555 6788999999988854
No 262
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=86.05 E-value=1.1 Score=48.46 Aligned_cols=21 Identities=10% Similarity=-0.007 Sum_probs=16.7
Q ss_pred hHHHhhhcCCCchh---hhhhcCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS 102 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~ 102 (317)
...+.||.|+|||| ++.....
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSSC
T ss_pred EEEEEecCCCcHHHHHHHhccccc
Confidence 45688999999999 7776664
No 263
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=86.00 E-value=0.15 Score=46.95 Aligned_cols=29 Identities=14% Similarity=0.048 Sum_probs=24.1
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEech
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGS 111 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s 111 (317)
+.+.||+|+|||+ .+|..++..++..+.-
T Consensus 10 I~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 10 IVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred EEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 4688999999999 8999999877776543
No 264
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=85.80 E-value=0.12 Score=43.59 Aligned_cols=32 Identities=13% Similarity=0.166 Sum_probs=23.2
Q ss_pred HHHhhhcCCCchh---hhhhcC----CceEEEEechhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQT----SATFLRVVGSELI 114 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~----~~~~~~v~~s~l~ 114 (317)
+.+.|+||+|||| .++..+ |.+++.+++..+.
T Consensus 28 i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 28 IWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 5688999999999 777655 4557777754443
No 265
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=85.60 E-value=0.4 Score=46.49 Aligned_cols=29 Identities=10% Similarity=0.016 Sum_probs=19.5
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEec
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVG 110 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~ 110 (317)
.+++.|+||+|||| .+|..+ |..+..+++
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 46788999999999 444332 555555554
No 266
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=85.33 E-value=0.14 Score=43.00 Aligned_cols=20 Identities=15% Similarity=0.057 Sum_probs=16.6
Q ss_pred HHHhhhcCCCchh---hhhhcCC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS 102 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~ 102 (317)
+.|.||||+|||| .++..++
T Consensus 15 i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp EEEECCTTSCHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCc
Confidence 5688999999999 7777764
No 267
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=84.75 E-value=0.2 Score=43.78 Aligned_cols=24 Identities=8% Similarity=0.059 Sum_probs=19.5
Q ss_pred HHHhhhcCCCchh---hhhhcC-CceEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQT-SATFL 106 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~-~~~~~ 106 (317)
+.|.|++|+|||| .+++.+ +..++
T Consensus 27 I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 27 ISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp EEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 5689999999999 888888 54444
No 268
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=84.67 E-value=0.71 Score=41.43 Aligned_cols=14 Identities=21% Similarity=0.249 Sum_probs=11.8
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.+|+|+|||+
T Consensus 46 ~~l~~~~TGsGKT~ 59 (367)
T 1hv8_A 46 NIVAQARTGSGKTA 59 (367)
T ss_dssp EEEEECCSSSSHHH
T ss_pred CEEEECCCCChHHH
Confidence 34678999999998
No 269
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=84.66 E-value=0.21 Score=41.09 Aligned_cols=30 Identities=20% Similarity=0.165 Sum_probs=20.2
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSEL 113 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~l 113 (317)
+.+.||||+|||| .++...+. .+.+++.++
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~~ 37 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDII 37 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHHH
T ss_pred EEEECCCCCcHHHHHHHHhcccCC-eEEEcccch
Confidence 4578999999999 77765543 244555444
No 270
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=84.63 E-value=3.5 Score=38.00 Aligned_cols=106 Identities=11% Similarity=0.159 Sum_probs=64.4
Q ss_pred CceEEEEechhhhhhhcCCch------HHHHHHHHHHHh--hCCceEeecccccccccccCCCCCchhHHHHHHHHHHHH
Q psy7780 102 SATFLRVVGSELIQKYLGDGP------KLVRELFRVAEE--HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQ 173 (317)
Q Consensus 102 ~~~~~~v~~s~l~~~~~g~~~------~~l~~~f~~a~~--~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~ 173 (317)
..+++.++.+.+.+.. +.. ..+..+|..+.. ..|.++++||+..+.... .......+..++.+
T Consensus 222 ~~~~vv~dl~~l~~~~--~~~~~~~~~~~l~~i~~~~~~~~~~~~~i~iDEa~~~~~~~-------~~~~~~~l~~~~~~ 292 (392)
T 4ag6_A 222 DSDFIVFDVHDLQNAE--DQVKRAQYFNVLSFAWNILERDRRERTVLVVDEAWMLVDPQ-------TPQAIAFLRDTSKR 292 (392)
T ss_dssp CSSEEEEECGGGTTSC--HHHHHHHHHHHHHHHHHHHHHSCCTTCEEEETTGGGGCCTT-------CTHHHHHHHHHHHH
T ss_pred CCCEEEEEchhhhcCC--HHHHHHHHHHHHHHHHHHHHhCCCccEEEEEecHHHHhCcC-------chHHHHHHHHHHHH
Confidence 3567888888776421 000 123344555543 348999999999998532 12234556666666
Q ss_pred hcCCCcccccccchhhhcccccccCCCCeEEEEEcCCCCCCCc--------cccCCCcceeEEEeCCCCHHHHHHHH
Q psy7780 174 LDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDP--------ALIRPGRIDRKIEFPLPDEKTKRRIF 242 (317)
Q Consensus 174 ld~~~~~~~~~~~~~~~~~~~~~~~~~~v~vI~tTN~~~~Ld~--------al~rpgRf~~~I~~~~P~~~~r~~Il 242 (317)
...+ ++.++.+|.++..+.. +++. .++.+|.++.+. .++..+.
T Consensus 293 ~Rk~-----------------------g~~~~~~tQ~~~d~~~~~~~~~~~~il~--n~~~~i~l~~~~-~~~~~~~ 343 (392)
T 4ag6_A 293 IRKY-----------------------NGSLIVISQNVIDFLAPEVQRYGQALLD--NPTYKLLLAQGE-KDLEAIT 343 (392)
T ss_dssp GGGG-----------------------TCEEEEEESCGGGGGSTTTHHHHHHHHH--SCSEEEECSCCH-HHHHHHH
T ss_pred hhhh-----------------------CeEEEEEcCCHHHhhChhhHHHHHHHHH--hhhhhheeCCCh-hhHHHHH
Confidence 5443 3457778888777654 5666 677888888764 4444443
No 271
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=84.47 E-value=7.2 Score=37.59 Aligned_cols=59 Identities=22% Similarity=0.235 Sum_probs=36.7
Q ss_pred hHHHhhhcCCCchh----hhhhcCCceEEEEechhhhhhhcCCchHHHHHHHHHHHhh---CCceEeecccc
Q psy7780 82 SELIQKYLGDGPKL----AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH---APSIVFIDEID 146 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----aiA~~~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~---~P~Ii~iDEiD 146 (317)
-+++.|++|+|||+ .+++..+..++.|-+ -+|+..+.+.++.+..... ..++++.--.|
T Consensus 165 R~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~------~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad 230 (507)
T 1fx0_A 165 RELIIGDRQTGKTAVATDTILNQQGQNVICVYV------AIGQKASSVAQVVTNFQERGAMEYTIVVAETAD 230 (507)
T ss_dssp BCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEE------EESCCHHHHHHHHHHTGGGTGGGSEEEEEECTT
T ss_pred EEEEecCCCCCccHHHHHHHHHhhcCCcEEEEE------EcCCCchHHHHHHHHHHhcCccccceEEEECCC
Confidence 56788999999998 677777655433221 1566666777766655442 24566654443
No 272
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=84.46 E-value=0.2 Score=42.61 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhhc
Q psy7780 267 LSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKK 308 (317)
Q Consensus 267 ~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~~ 308 (317)
-.|+++..+|..|++.-..+....=..++|.+-+.+.+.+++
T Consensus 154 ~pgrn~a~iiE~aa~n~~lk~~G~~~a~~f~~r~~~~i~~~~ 195 (205)
T 2qmh_A 154 KVGRNLAIIIEVAAMNFRAKSMGYDATKTFEKNLNHLIEHNE 195 (205)
T ss_dssp CTTCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 356777788887777665444444456788777777776543
No 273
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=84.19 E-value=0.35 Score=45.82 Aligned_cols=34 Identities=29% Similarity=0.259 Sum_probs=23.5
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEech-hhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGS-ELIQK 116 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s-~l~~~ 116 (317)
.++.++.|+|||. +++.+.+...+.+... +|...
T Consensus 111 ~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q 148 (472)
T 2fwr_A 111 GCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQ 148 (472)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHH
Confidence 5788999999999 4444556666666655 55543
No 274
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=84.10 E-value=0.31 Score=48.46 Aligned_cols=14 Identities=36% Similarity=0.401 Sum_probs=12.4
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.||||||||+
T Consensus 197 ~~li~GppGTGKT~ 210 (624)
T 2gk6_A 197 LSLIQGPPGTGKTV 210 (624)
T ss_dssp EEEEECCTTSCHHH
T ss_pred CeEEECCCCCCHHH
Confidence 45789999999998
No 275
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=83.93 E-value=2.5 Score=44.03 Aligned_cols=14 Identities=14% Similarity=-0.031 Sum_probs=12.5
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.||.|+||||
T Consensus 664 i~~ItGpNGsGKST 677 (934)
T 3thx_A 664 FHIITGPNMGGKST 677 (934)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46789999999999
No 276
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=83.84 E-value=0.9 Score=42.12 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=20.5
Q ss_pred HHHhhhcCCCchh---hh-hhc---CCceEEEEech-hhhh
Q psy7780 83 ELIQKYLGDGPKL---AV-ANQ---TSATFLRVVGS-ELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---ai-A~~---~~~~~~~v~~s-~l~~ 115 (317)
.++..|+|+|||. ++ ... .+...+.+..+ .|..
T Consensus 26 ~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~ 66 (494)
T 1wp9_A 26 CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVL 66 (494)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHH
Confidence 4688999999999 22 222 24556666554 5543
No 277
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=83.73 E-value=2.9 Score=42.78 Aligned_cols=14 Identities=14% Similarity=-0.073 Sum_probs=12.6
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
...+.||.|+||||
T Consensus 609 i~~ItGpNGsGKST 622 (800)
T 1wb9_A 609 MLIITGPNMGGKST 622 (800)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCChHH
Confidence 56789999999999
No 278
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=83.13 E-value=0.27 Score=42.32 Aligned_cols=25 Identities=20% Similarity=0.406 Sum_probs=22.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLR 107 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~ 107 (317)
+.+.|++|||||+ .+|+.+|++|+.
T Consensus 17 I~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 17 ITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 4578999999999 899999999865
No 279
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=82.67 E-value=0.84 Score=43.28 Aligned_cols=64 Identities=16% Similarity=0.265 Sum_probs=35.0
Q ss_pred hHHHhhhcCCCchh---hhh----hcCCceEEEEechhh----h------hh------hc---CCc-hHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVA----NQTSATFLRVVGSEL----I------QK------YL---GDG-PKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA----~~~~~~~~~v~~s~l----~------~~------~~---g~~-~~~l~~~f~~a~~ 134 (317)
.+++.|++|+|||| .+| ..-|..+..+++--. . .. +. +.. ...++..+..++.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~ 181 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKL 181 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHh
Confidence 35677999999999 333 222666666554310 0 00 01 011 2233666777764
Q ss_pred hCCceEeeccc
Q psy7780 135 HAPSIVFIDEI 145 (317)
Q Consensus 135 ~~P~Ii~iDEi 145 (317)
..-.+++||=.
T Consensus 182 ~~~D~VIIDTp 192 (433)
T 2xxa_A 182 KFYDVLLVDTA 192 (433)
T ss_dssp TTCSEEEEECC
T ss_pred CCCCEEEEECC
Confidence 44578888753
No 280
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=82.62 E-value=0.2 Score=41.94 Aligned_cols=20 Identities=15% Similarity=0.125 Sum_probs=15.5
Q ss_pred hHHHhhhcCCCchh---hhhhcC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~ 101 (317)
|+++.||+|+|||+ .+..+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 46789999999999 555444
No 281
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=82.43 E-value=0.92 Score=40.65 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=34.2
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEech----hh-------hhh-----h---cCCc-hHHHHHHHHHHHhh
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVGS----EL-------IQK-----Y---LGDG-PKLVRELFRVAEEH 135 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~s----~l-------~~~-----~---~g~~-~~~l~~~f~~a~~~ 135 (317)
.+.+.|++|+|||| .+|..+ +..+..+++- .. ... + .+.. ...+++.++.++..
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~~ 179 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSE 179 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 45678999999998 333322 4455555432 00 000 0 1111 22345666666645
Q ss_pred CCceEeeccc
Q psy7780 136 APSIVFIDEI 145 (317)
Q Consensus 136 ~P~Ii~iDEi 145 (317)
...+|+||=.
T Consensus 180 ~~D~ViIDTp 189 (297)
T 1j8m_F 180 KMEIIIVDTA 189 (297)
T ss_dssp TCSEEEEECC
T ss_pred CCCEEEEeCC
Confidence 5578888863
No 282
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=82.13 E-value=0.13 Score=43.10 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=15.6
Q ss_pred HHhhhcCCCchh---hhhhcCC
Q psy7780 84 LIQKYLGDGPKL---AVANQTS 102 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~ 102 (317)
.|.|++|+|||| .++..++
T Consensus 4 ~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 4 AIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999 6776664
No 283
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=82.03 E-value=4.9 Score=38.70 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=19.2
Q ss_pred hHHHhhhcCCCchh----hhhhcCCceEE
Q psy7780 82 SELIQKYLGDGPKL----AVANQTSATFL 106 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----aiA~~~~~~~~ 106 (317)
-+++.|++|+|||+ .+++..+..++
T Consensus 164 R~~Ifg~~g~GKT~Lal~~I~~~~~~dv~ 192 (502)
T 2qe7_A 164 RELIIGDRQTGKTTIAIDTIINQKGQDVI 192 (502)
T ss_dssp BCEEEECSSSCHHHHHHHHHHGGGSCSEE
T ss_pred EEEEECCCCCCchHHHHHHHHHhhcCCcE
Confidence 55788999999998 67777766543
No 284
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=81.81 E-value=0.2 Score=43.18 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=19.6
Q ss_pred HHHhhhcCCCchh---hhhhcCC--ceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS--ATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~--~~~~~v 108 (317)
+.|.|+||+|||| .+++.++ ..++..
T Consensus 29 i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 5689999999999 7777765 455443
No 285
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=81.41 E-value=0.32 Score=40.28 Aligned_cols=19 Identities=11% Similarity=0.093 Sum_probs=15.4
Q ss_pred HHHhhhcCCCchh---hhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~ 101 (317)
+.+.||+|+|||| .++...
T Consensus 9 i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 9 IVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 4578999999999 666655
No 286
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=81.35 E-value=2.5 Score=35.22 Aligned_cols=13 Identities=31% Similarity=0.197 Sum_probs=11.5
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++.+|+|+|||.
T Consensus 54 ~li~~~TGsGKT~ 66 (220)
T 1t6n_A 54 VLCQAKSGMGKTA 66 (220)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEECCCCCchhh
Confidence 5688999999998
No 287
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=81.08 E-value=0.84 Score=38.88 Aligned_cols=24 Identities=17% Similarity=0.253 Sum_probs=18.9
Q ss_pred HhhhcCCCchh---hhhhcCCceEEEEe
Q psy7780 85 IQKYLGDGPKL---AVANQTSATFLRVV 109 (317)
Q Consensus 85 l~G~pGtGKT~---aiA~~~~~~~~~v~ 109 (317)
+.|..|||||+ .++. +|++++..+
T Consensus 14 lTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 14 LTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp EECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred EECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 67999999999 5555 898887643
No 288
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=80.97 E-value=0.5 Score=48.24 Aligned_cols=13 Identities=15% Similarity=0.159 Sum_probs=11.8
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++.||+|+|||+
T Consensus 112 vii~gpTGSGKTt 124 (773)
T 2xau_A 112 MVFVGETGSGKTT 124 (773)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 5788999999999
No 289
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=80.87 E-value=3.8 Score=38.90 Aligned_cols=13 Identities=23% Similarity=0.284 Sum_probs=11.5
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++..|.|+|||.
T Consensus 22 ~l~~~~tGsGKT~ 34 (555)
T 3tbk_A 22 TIICAPTGCGKTF 34 (555)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEEeCCCChHHH
Confidence 4688999999998
No 290
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=80.77 E-value=3.1 Score=40.09 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=17.7
Q ss_pred hHHHhhhcCCCchh----hhhhcCCceE
Q psy7780 82 SELIQKYLGDGPKL----AVANQTSATF 105 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----aiA~~~~~~~ 105 (317)
-+++.|++|||||+ .+++..+..+
T Consensus 164 R~~Ifg~~g~GKT~l~l~~I~n~~~~dv 191 (513)
T 3oaa_A 164 RELIIGDRQTGKTALAIDAIINQRDSGI 191 (513)
T ss_dssp BCEEEESSSSSHHHHHHHHHHTTSSSSC
T ss_pred EEEeecCCCCCcchHHHHHHHhhccCCc
Confidence 45778889999998 5666655543
No 291
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=80.43 E-value=0.36 Score=45.65 Aligned_cols=65 Identities=20% Similarity=0.235 Sum_probs=34.7
Q ss_pred hhHHHhhhcCCCchh---hhhhcCC---ceEEEEech-hhh-h----hhcC-CchHHHHHHHHHHHhhCCceEeeccc
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTS---ATFLRVVGS-ELI-Q----KYLG-DGPKLVRELFRVAEEHAPSIVFIDEI 145 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~---~~~~~v~~s-~l~-~----~~~g-~~~~~l~~~f~~a~~~~P~Ii~iDEi 145 (317)
|.+++.||+|+|||| +++..+. -.++.+.-. +.. . ..++ ............+-...|.++++.|+
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 357899999999999 6655543 233333211 110 0 0000 01112333444455678999999884
No 292
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=80.41 E-value=0.38 Score=40.47 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=16.3
Q ss_pred HHHhhhcCCCchh---hhhhcCC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS 102 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~ 102 (317)
+.+.||+|+|||| .++....
T Consensus 11 i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHHSTT
T ss_pred EEEECcCCCCHHHHHHHHHhhCC
Confidence 4578999999999 7777664
No 293
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=79.57 E-value=0.38 Score=39.83 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=15.3
Q ss_pred HHHhhhcCCCchh---hhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~ 101 (317)
+.+.||+|+|||| .++...
T Consensus 10 i~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHhhC
Confidence 4578999999999 676654
No 294
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=79.31 E-value=0.33 Score=45.67 Aligned_cols=28 Identities=14% Similarity=0.143 Sum_probs=22.8
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEec
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVG 110 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~ 110 (317)
+.+.||+|+|||+ .+|..++..++..+.
T Consensus 5 i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred EEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 3578999999999 888888887776544
No 295
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=79.30 E-value=0.4 Score=40.00 Aligned_cols=32 Identities=13% Similarity=0.025 Sum_probs=23.6
Q ss_pred CCCccccCCCcceeEEEeCCCCHHHHHHHHHHHh
Q psy7780 213 TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHT 246 (317)
Q Consensus 213 ~Ld~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l 246 (317)
.+|+.+.. .+|.++++..+........++...
T Consensus 116 ~~de~~~~--~~d~~i~ld~~~~~~~~r~l~r~~ 147 (211)
T 3asz_A 116 LYPKELRD--LMDLKVFVDADADERFIRRLKRDV 147 (211)
T ss_dssp TSSHHHHT--TCSEEEEEECCHHHHHHHHHHHHH
T ss_pred ccCHHHHH--hcCEEEEEeCCHHHHHHHHHHHHH
Confidence 34677666 889999999988777666666543
No 296
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=79.07 E-value=0.4 Score=39.28 Aligned_cols=19 Identities=11% Similarity=0.151 Sum_probs=15.2
Q ss_pred HHHhhhcCCCchh---hhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~ 101 (317)
+.+.||+|+|||| .++...
T Consensus 8 i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 4678999999999 666654
No 297
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=79.00 E-value=1.5 Score=40.25 Aligned_cols=14 Identities=21% Similarity=0.266 Sum_probs=11.8
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.+|.|+|||+
T Consensus 76 ~~lv~a~TGsGKT~ 89 (410)
T 2j0s_A 76 DVIAQSQSGTGKTA 89 (410)
T ss_dssp CEEEECCTTSSHHH
T ss_pred CEEEECCCCCCchH
Confidence 35678899999997
No 298
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=79.00 E-value=6.7 Score=37.84 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=19.3
Q ss_pred hHHHhhhcCCCchh----hhhhcCCceEE
Q psy7780 82 SELIQKYLGDGPKL----AVANQTSATFL 106 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----aiA~~~~~~~~ 106 (317)
-+++.|++|+|||+ .+++..+..++
T Consensus 177 R~~I~g~~g~GKT~Lal~~I~~~~~~dv~ 205 (515)
T 2r9v_A 177 RELIIGDRQTGKTAIAIDTIINQKGQGVY 205 (515)
T ss_dssp BEEEEEETTSSHHHHHHHHHHTTTTTTEE
T ss_pred EEEEEcCCCCCccHHHHHHHHHhhcCCcE
Confidence 45778889999998 67777776643
No 299
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=78.95 E-value=2.3 Score=37.81 Aligned_cols=13 Identities=23% Similarity=0.417 Sum_probs=11.0
Q ss_pred ceEeecccccccc
Q psy7780 138 SIVFIDEIDAVGT 150 (317)
Q Consensus 138 ~Ii~iDEiD~l~~ 150 (317)
.+|+|||+|.+..
T Consensus 237 ~~lVlDEad~l~~ 249 (300)
T 3fmo_B 237 KVFVLDEADVMIA 249 (300)
T ss_dssp SEEEETTHHHHHH
T ss_pred eEEEEeCHHHHhh
Confidence 5899999999864
No 300
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=78.92 E-value=1.9 Score=39.01 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=11.5
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++.+|+|+|||+
T Consensus 47 ~lv~a~TGsGKT~ 59 (395)
T 3pey_A 47 MIAQSQSGTGKTA 59 (395)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEECCCCCcHHH
Confidence 4688899999998
No 301
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=78.89 E-value=1.7 Score=39.79 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=11.9
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.+|.|+|||+
T Consensus 79 ~~lv~a~TGsGKT~ 92 (414)
T 3eiq_A 79 DVIAQAQSGTGKTA 92 (414)
T ss_dssp CEEECCCSCSSSHH
T ss_pred CEEEECCCCCcccH
Confidence 35788999999998
No 302
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=78.80 E-value=2.4 Score=44.65 Aligned_cols=14 Identities=14% Similarity=-0.009 Sum_probs=12.5
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.||.|+||||
T Consensus 791 i~~ItGpNgsGKST 804 (1022)
T 2o8b_B 791 CVLVTGPNMGGKST 804 (1022)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCChHH
Confidence 46789999999999
No 303
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=78.49 E-value=0.38 Score=39.11 Aligned_cols=13 Identities=15% Similarity=0.197 Sum_probs=11.7
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
..+.||+|+||||
T Consensus 12 ~~l~G~nGsGKST 24 (171)
T 4gp7_A 12 VVLIGSSGSGKST 24 (171)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEECCCCCCHHH
Confidence 5688999999999
No 304
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=78.25 E-value=2.3 Score=36.18 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=11.6
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.+|.|+|||.
T Consensus 68 ~~l~~apTGsGKT~ 81 (242)
T 3fe2_A 68 DMVGVAQTGSGKTL 81 (242)
T ss_dssp CEEEEECTTSCHHH
T ss_pred CEEEECCCcCHHHH
Confidence 34677899999998
No 305
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=78.18 E-value=1.8 Score=40.86 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=11.7
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.+|.|+|||.
T Consensus 133 ~~l~~a~TGsGKT~ 146 (479)
T 3fmp_B 133 NLIAQSQSGTGKTA 146 (479)
T ss_dssp EEEEECCSSSSHHH
T ss_pred cEEEEcCCCCchhH
Confidence 35678899999998
No 306
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=78.16 E-value=0.65 Score=47.58 Aligned_cols=14 Identities=36% Similarity=0.401 Sum_probs=12.3
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.||||||||+
T Consensus 373 ~~lI~GppGTGKT~ 386 (800)
T 2wjy_A 373 LSLIQGPPGTGKTV 386 (800)
T ss_dssp EEEEECCTTSCHHH
T ss_pred eEEEEcCCCCCHHH
Confidence 45789999999998
No 307
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=78.12 E-value=0.47 Score=46.75 Aligned_cols=31 Identities=13% Similarity=0.306 Sum_probs=24.9
Q ss_pred HHHhhhcCCCchh---hhhhcCC----ceEEEEechhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS----ATFLRVVGSEL 113 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~----~~~~~v~~s~l 113 (317)
++|.|+||+|||| +++..++ .+++.++...+
T Consensus 399 I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 399 IFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred EEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 6789999999999 8888876 67888875444
No 308
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=78.10 E-value=0.48 Score=40.68 Aligned_cols=23 Identities=9% Similarity=0.003 Sum_probs=18.5
Q ss_pred HHHhhhcCCCchh---hhhhcC-CceE
Q psy7780 83 ELIQKYLGDGPKL---AVANQT-SATF 105 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~-~~~~ 105 (317)
+.+.|++|+|||| .+++.+ +..+
T Consensus 5 i~~~G~~g~GKtt~~~~l~~~l~~~~~ 31 (241)
T 2ocp_A 5 LSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence 4578999999999 888888 4543
No 309
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=78.05 E-value=0.54 Score=39.09 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=23.0
Q ss_pred HHHhhhcCCCchh---hhhhcCCceEEEEechh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSATFLRVVGSE 112 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s~ 112 (317)
+|+.|++|+|||+ .+|.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 4678999999999 66766 77888887654
No 310
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=78.01 E-value=0.67 Score=38.47 Aligned_cols=20 Identities=25% Similarity=0.160 Sum_probs=16.3
Q ss_pred Eeechh-hHHHhhhcCCCchh
Q psy7780 76 FLRVVG-SELIQKYLGDGPKL 95 (317)
Q Consensus 76 ~~~i~g-~~Ll~G~pGtGKT~ 95 (317)
.-++.| .+||.|++|+|||+
T Consensus 11 ~v~v~G~gvli~G~SGaGKSt 31 (181)
T 3tqf_A 11 FLVIDKMGVLITGEANIGKSE 31 (181)
T ss_dssp EEEETTEEEEEEESSSSSHHH
T ss_pred EEEECCEEEEEEcCCCCCHHH
Confidence 344555 88999999999998
No 311
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=77.99 E-value=0.97 Score=41.63 Aligned_cols=65 Identities=15% Similarity=0.323 Sum_probs=38.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCC--ceEEEEech-hhh-----hh--hc-------CC-chHHHHHHHHHHHhhCCceE
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS--ATFLRVVGS-ELI-----QK--YL-------GD-GPKLVRELFRVAEEHAPSIV 140 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~--~~~~~v~~s-~l~-----~~--~~-------g~-~~~~l~~~f~~a~~~~P~Ii 140 (317)
.+++.||.|+|||| +++.... ...+.+... ++. .. ++ |. ....+++.+..+....|..+
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~ 256 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRI 256 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEE
Confidence 45678999999999 6666553 234444432 110 00 11 10 12246677777777889999
Q ss_pred eecccc
Q psy7780 141 FIDEID 146 (317)
Q Consensus 141 ~iDEiD 146 (317)
+++|+.
T Consensus 257 l~~e~r 262 (361)
T 2gza_A 257 LLAELR 262 (361)
T ss_dssp EESCCC
T ss_pred EEcCch
Confidence 998864
No 312
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=77.44 E-value=2.8 Score=29.10 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q psy7780 271 DIKAICTEAGLMALRERRMKVTNEDFKKSKE 301 (317)
Q Consensus 271 dl~~l~~~A~~~a~~~~~~~it~~d~~~al~ 301 (317)
-++.++++|..++...+|+.++.+|+..|++
T Consensus 39 r~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 39 KLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 4678889999999999999999999999874
No 313
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=77.34 E-value=0.36 Score=40.47 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=18.1
Q ss_pred cceeEEEeCCCCHHHHHHHHHHHh
Q psy7780 223 RIDRKIEFPLPDEKTKRRIFNIHT 246 (317)
Q Consensus 223 Rf~~~I~~~~P~~~~r~~Il~~~l 246 (317)
.||..|++..|.......+++.+.
T Consensus 147 ~~d~~i~vd~~~~~~~~R~~~R~~ 170 (208)
T 3c8u_A 147 IWDVSIRLEVPMADLEARLVQRWL 170 (208)
T ss_dssp TCSEEEEECCCHHHHHHHHHHHHH
T ss_pred hcCEEEEEeCCHHHHHHHHHHHHH
Confidence 789999999997766666666553
No 314
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=76.61 E-value=3.2 Score=31.03 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q psy7780 270 ADIKAICTEAGLMALRERRMKVTNEDFKKSKESV 303 (317)
Q Consensus 270 ~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v 303 (317)
.-+..++++|..+|-..++.+|+.+|+..|+++.
T Consensus 60 ~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 60 SFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 4577899999999999999999999999999864
No 315
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=75.86 E-value=23 Score=33.79 Aligned_cols=46 Identities=15% Similarity=0.154 Sum_probs=28.0
Q ss_pred hHHHhhhcCCCchh---hhhhc-CCc--eEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQ-TSA--TFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~-~~~--~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
-.++.|++|+|||+ .+++. ... .++.+- -+|+-.+.+.++++....
T Consensus 155 r~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~-------~iGER~rEv~e~~~~~~~ 206 (482)
T 2ck3_D 155 KIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA-------GVGERTREGNDLYHEMIE 206 (482)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEE-------EESCCHHHHHHHHHHHHH
T ss_pred eeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEE-------ECCCcchHHHHHHHHhhh
Confidence 45677889999998 33332 211 222221 167878888888776654
No 316
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=75.75 E-value=3.7 Score=30.69 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q psy7780 270 ADIKAICTEAGLMALRERRMKVTNEDFKKSKESV 303 (317)
Q Consensus 270 ~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v 303 (317)
.-+..++++|..+|-..++..|+.+|+..|+++.
T Consensus 61 ~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 61 TFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 3577888999999999999999999999999975
No 317
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=75.41 E-value=0.72 Score=47.30 Aligned_cols=14 Identities=36% Similarity=0.401 Sum_probs=12.4
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.||||||||+
T Consensus 377 ~~lI~GppGTGKT~ 390 (802)
T 2xzl_A 377 LSLIQGPPGTGKTV 390 (802)
T ss_dssp EEEEECSTTSSHHH
T ss_pred CEEEECCCCCCHHH
Confidence 46889999999998
No 318
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=75.28 E-value=0.92 Score=37.73 Aligned_cols=27 Identities=7% Similarity=-0.038 Sum_probs=18.6
Q ss_pred HHHhhhcCCCchh---hhhhcC---CceEEEEe
Q psy7780 83 ELIQKYLGDGPKL---AVANQT---SATFLRVV 109 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~ 109 (317)
+.+.|++|+|||| .++..+ +.+++.++
T Consensus 25 i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 4588999999999 566543 44555443
No 319
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=75.25 E-value=1.2 Score=40.75 Aligned_cols=13 Identities=23% Similarity=0.046 Sum_probs=11.7
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
+.+.|+||+|||+
T Consensus 82 I~i~G~~G~GKST 94 (355)
T 3p32_A 82 VGITGVPGVGKST 94 (355)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 5689999999999
No 320
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=75.18 E-value=0.57 Score=40.07 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=17.9
Q ss_pred HHHhhhcCCCchh---hhhhcCCc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSA 103 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~ 103 (317)
+.|.|++|+|||| .+++.++.
T Consensus 8 i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 8 ILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 5689999999999 78888775
No 321
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=75.18 E-value=0.61 Score=38.30 Aligned_cols=18 Identities=17% Similarity=0.182 Sum_probs=14.3
Q ss_pred HHhhhcCCCchh---hhhhcC
Q psy7780 84 LIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~ 101 (317)
.+.||+|+|||| .++...
T Consensus 5 ~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 5 VISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEESSSSSSHHHHHHHHHHHC
T ss_pred EEECCCCCCHHHHHHHHHhhC
Confidence 478999999999 666554
No 322
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=75.16 E-value=2.3 Score=37.87 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhCCceEeecccc
Q psy7780 125 VRELFRVAEEHAPSIVFIDEID 146 (317)
Q Consensus 125 l~~~f~~a~~~~P~Ii~iDEiD 146 (317)
.+..++.+....+.+|+||+--
T Consensus 169 ~~~~l~~~~~~~~D~viiDtpp 190 (295)
T 1ls1_A 169 RRRVEEKARLEARDLILVDTAG 190 (295)
T ss_dssp HHHHHHHHHHHTCCEEEEECCC
T ss_pred HHHHHHHHHhCCCCEEEEeCCC
Confidence 3566777765677899999853
No 323
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=74.68 E-value=2.4 Score=40.33 Aligned_cols=31 Identities=3% Similarity=-0.039 Sum_probs=21.5
Q ss_pred HHHhhhcCCCchh---hhhhcCC---ceEEEEechhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS---ATFLRVVGSEL 113 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~---~~~~~v~~s~l 113 (317)
+++.|+||+|||+ .+|..++ .+...++..++
T Consensus 42 IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~ 78 (469)
T 1bif_A 42 IVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQY 78 (469)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchh
Confidence 5789999999999 7777654 34445444333
No 324
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=74.61 E-value=1.9 Score=39.17 Aligned_cols=17 Identities=24% Similarity=0.145 Sum_probs=13.6
Q ss_pred HHHhhhcCCCchh---hhhh
Q psy7780 83 ELIQKYLGDGPKL---AVAN 99 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~ 99 (317)
+.+.|+||+|||| +++.
T Consensus 58 v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 58 VGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 4588999999999 5553
No 325
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=74.28 E-value=0.47 Score=46.87 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=14.5
Q ss_pred hhhHHHhhhcCCCchh
Q psy7780 80 VGSELIQKYLGDGPKL 95 (317)
Q Consensus 80 ~g~~Ll~G~pGtGKT~ 95 (317)
.||.++.|+||||||+
T Consensus 22 ~~~~lV~a~aGsGKT~ 37 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTR 37 (647)
T ss_dssp SSCEEEEECTTSCHHH
T ss_pred CCCEEEEECCCCCHHH
Confidence 5678999999999998
No 326
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=73.96 E-value=4 Score=30.44 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q psy7780 270 ADIKAICTEAGLMALRERRMKVTNEDFKKSKESV 303 (317)
Q Consensus 270 ~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v 303 (317)
.-+..++++|..+|-..++..|+.+|+..|++..
T Consensus 61 ~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 61 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 3577888999999999999999999999999875
No 327
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=73.87 E-value=0.45 Score=40.51 Aligned_cols=26 Identities=12% Similarity=0.058 Sum_probs=18.5
Q ss_pred HHHhhhcCCCchh---hhhhcC---CceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQT---SATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~---~~~~~~v 108 (317)
+.|.|++|+|||| .+++.+ +.+++..
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 5689999999999 555544 4555444
No 328
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=73.46 E-value=0.43 Score=41.18 Aligned_cols=19 Identities=11% Similarity=0.062 Sum_probs=12.8
Q ss_pred HHHhhhcCCCchh---hhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~ 101 (317)
+.|.|++|+|||| .+++.+
T Consensus 28 I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 28 ITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp EEEECCC---CHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999 666665
No 329
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=73.19 E-value=1.6 Score=40.30 Aligned_cols=13 Identities=15% Similarity=-0.010 Sum_probs=11.5
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++.+|.|+|||+
T Consensus 39 ~lv~apTGsGKT~ 51 (414)
T 3oiy_A 39 FTMVAPTGVGKTT 51 (414)
T ss_dssp EECCSCSSSSHHH
T ss_pred EEEEeCCCCCHHH
Confidence 4688999999998
No 330
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=73.12 E-value=0.45 Score=42.53 Aligned_cols=29 Identities=10% Similarity=-0.142 Sum_probs=19.4
Q ss_pred ccccCCCcceeEEEeCCCCHHHHHHHHHHHh
Q psy7780 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHT 246 (317)
Q Consensus 216 ~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l 246 (317)
..+.. .+|..|++..|........+++..
T Consensus 142 ~~v~~--~~D~~IfV~a~~~~rl~Rrl~Rd~ 170 (290)
T 1a7j_A 142 VNIAG--LADLKIGVVPVINLEWIQKIHRDR 170 (290)
T ss_dssp CBCGG--GCSEEEEEEECHHHHHHHHHHHTS
T ss_pred HhHHH--hCCEEEEEECCHHHHHHHHhhhhh
Confidence 34555 789999998887666655555443
No 331
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=72.83 E-value=2.4 Score=38.60 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=11.8
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.+|+|+|||+
T Consensus 66 ~~lv~apTGsGKT~ 79 (412)
T 3fht_A 66 NLIAQSQSGTGKTA 79 (412)
T ss_dssp CEEEECCTTSCHHH
T ss_pred eEEEECCCCchHHH
Confidence 35678899999998
No 332
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=72.31 E-value=3.1 Score=41.61 Aligned_cols=14 Identities=21% Similarity=0.221 Sum_probs=12.3
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.+|+|+|||+
T Consensus 42 ~~lv~apTGsGKT~ 55 (702)
T 2p6r_A 42 NLLLAMPTAAGKTL 55 (702)
T ss_dssp CEEEECSSHHHHHH
T ss_pred cEEEEcCCccHHHH
Confidence 45789999999998
No 333
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=72.11 E-value=1.5 Score=37.62 Aligned_cols=14 Identities=21% Similarity=0.067 Sum_probs=12.4
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
-.+++|+.|+|||+
T Consensus 30 I~vitG~M~sGKTT 43 (219)
T 3e2i_A 30 IECITGSMFSGKSE 43 (219)
T ss_dssp EEEEEECTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 45689999999999
No 334
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=72.08 E-value=2.4 Score=28.95 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q psy7780 270 ADIKAICTEAGLMALRERRMKVTNEDFKKSKESV 303 (317)
Q Consensus 270 ~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v 303 (317)
.-+..+..+|...|...++.+|+.+|+..|++.+
T Consensus 34 ~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 34 EMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 3566788889999999999999999999998753
No 335
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=71.45 E-value=2.8 Score=30.10 Aligned_cols=35 Identities=14% Similarity=0.078 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q psy7780 269 GADIKAICTEAGLMALRERRMKVTNEDFKKSKESV 303 (317)
Q Consensus 269 ~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v 303 (317)
-.-+..++++|..++-..++++|+.+|+..|+++.
T Consensus 41 ~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 41 KVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 34577899999999999999999999999998853
No 336
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=71.27 E-value=3.4 Score=37.35 Aligned_cols=14 Identities=14% Similarity=0.112 Sum_probs=12.3
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
.+.+.|++|+||||
T Consensus 107 vI~ivG~~G~GKTT 120 (320)
T 1zu4_A 107 IFMLVGVNGTGKTT 120 (320)
T ss_dssp EEEEESSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 46788999999998
No 337
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=70.51 E-value=44 Score=27.58 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHH
Q psy7780 200 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRI 241 (317)
Q Consensus 200 ~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~I 241 (317)
.++++|=+...........+. ..|..|-+-.|+......+
T Consensus 132 yD~viiD~pp~~~~~~~~~l~--~aD~viiv~~~~~~s~~~~ 171 (254)
T 3kjh_A 132 KEAVVMDMGAGIEHLTRGTAK--AVDMMIAVIEPNLNSIKTG 171 (254)
T ss_dssp CSEEEEEECTTCTTCCHHHHT--TCSEEEEEECSSHHHHHHH
T ss_pred CCEEEEeCCCcccHHHHHHHH--HCCEEEEecCCCHHHHHHH
Confidence 456777766555555556666 6777777777776555443
No 338
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=70.44 E-value=0.92 Score=37.90 Aligned_cols=20 Identities=5% Similarity=0.051 Sum_probs=15.7
Q ss_pred HHHhhhcCCCchh---hhhhcCC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS 102 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~ 102 (317)
..+.||+|+|||| +++....
T Consensus 23 ~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 4477999999999 7776653
No 339
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=70.02 E-value=7.9 Score=37.33 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=15.5
Q ss_pred hHHHhhhcCCCchh----hhhhcCC
Q psy7780 82 SELIQKYLGDGPKL----AVANQTS 102 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----aiA~~~~ 102 (317)
-+++.|++|||||+ .+++..+
T Consensus 164 R~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 164 RELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp BCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred EEEEecCCCCCchHHHHHHHHHHHh
Confidence 45788999999998 3455544
No 340
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=70.00 E-value=0.94 Score=37.70 Aligned_cols=18 Identities=11% Similarity=0.172 Sum_probs=14.2
Q ss_pred HHHhhhcCCCchh---hhhhc
Q psy7780 83 ELIQKYLGDGPKL---AVANQ 100 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~ 100 (317)
+.|.||+|+|||| .++..
T Consensus 7 i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 4578999999999 55543
No 341
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=69.63 E-value=0.62 Score=39.68 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=14.8
Q ss_pred HHHhhhcCCCchh---hhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~ 101 (317)
+.|.|++|+|||| .+++.+
T Consensus 6 i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 6 IVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999 555544
No 342
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=69.50 E-value=4 Score=39.10 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=11.8
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.+|.|+|||.
T Consensus 160 ~~ll~apTGsGKT~ 173 (508)
T 3fho_A 160 NMIGQSQSGTGKTA 173 (508)
T ss_dssp CEEEECCSSTTSHH
T ss_pred CEEEECCCCccHHH
Confidence 35678899999998
No 343
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=69.39 E-value=0.64 Score=40.31 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=15.1
Q ss_pred HHHhhhcCCCchh---hhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~ 101 (317)
+.|.|++|+|||| .+++.+
T Consensus 30 i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 30 IVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp EEEEESTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999 555544
No 344
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=69.28 E-value=3.1 Score=41.05 Aligned_cols=18 Identities=11% Similarity=0.019 Sum_probs=14.5
Q ss_pred HHHhhhcCCCchh---hhhhc
Q psy7780 83 ELIQKYLGDGPKL---AVANQ 100 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~ 100 (317)
+.+.|++|+|||| +++..
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSC
T ss_pred EEEECCCCChHHHHHHHHhCC
Confidence 4578999999999 66654
No 345
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=69.00 E-value=1.1 Score=37.85 Aligned_cols=21 Identities=19% Similarity=0.178 Sum_probs=16.5
Q ss_pred hHHHhhhcCCCchh---hhhhcCC
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS 102 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~ 102 (317)
.+.|.||+|+|||+ +++....
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 45688999999999 6666554
No 346
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=68.95 E-value=0.83 Score=45.20 Aligned_cols=14 Identities=21% Similarity=0.202 Sum_probs=12.4
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.|+||||||+
T Consensus 166 ~~vi~G~pGTGKTt 179 (608)
T 1w36_D 166 ISVISGGPGTGKTT 179 (608)
T ss_dssp EEEEECCTTSTHHH
T ss_pred CEEEEeCCCCCHHH
Confidence 46789999999997
No 347
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=68.31 E-value=1.1 Score=37.98 Aligned_cols=20 Identities=20% Similarity=0.094 Sum_probs=15.7
Q ss_pred hHHHhhhcCCCchh---hhhhcC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~ 101 (317)
.+.+.||+|+|||| .++...
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 45688999999999 666654
No 348
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=68.21 E-value=3.1 Score=37.99 Aligned_cols=17 Identities=12% Similarity=0.012 Sum_probs=13.8
Q ss_pred HHHhhhcCCCchh---hhhh
Q psy7780 83 ELIQKYLGDGPKL---AVAN 99 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~ 99 (317)
+.|.|+||+|||| +++.
T Consensus 77 v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 77 VGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 5688999999999 5554
No 349
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=68.20 E-value=0.95 Score=38.43 Aligned_cols=19 Identities=16% Similarity=0.158 Sum_probs=9.7
Q ss_pred HHHhhhcCCCchh---hhh-hcC
Q psy7780 83 ELIQKYLGDGPKL---AVA-NQT 101 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA-~~~ 101 (317)
+.|.||+|+|||| .++ ...
T Consensus 30 i~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEECSCC----CHHHHHHC---
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 4588999999999 676 544
No 350
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=67.78 E-value=0.98 Score=40.52 Aligned_cols=56 Identities=9% Similarity=0.057 Sum_probs=31.5
Q ss_pred cccCCCcceeEEEeCCCCHHHHHHHHHHHhc--CCCCCcCCCHHHHHHhCCCCCHHHHHHHHH
Q psy7780 217 ALIRPGRIDRKIEFPLPDEKTKRRIFNIHTS--RMTLAEDVNLQELIMAKDDLSGADIKAICT 277 (317)
Q Consensus 217 al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~--~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~ 277 (317)
.+.. .||..|++..|....+..++++... .... -+.+.......|+|..++.+.+.
T Consensus 210 ~~~~--~~D~~i~V~~~~~~~~~R~~~R~~~~r~~~~---r~~~~~~~~~~g~s~e~a~~~i~ 267 (308)
T 1sq5_A 210 FVSD--FVDFSIYVDAPEDLLQTWYINRFLKFREGAF---TDPDSYFHNYAKLTKEEAIKTAM 267 (308)
T ss_dssp CGGG--GCSEEEEEECCHHHHHHHHHHHHHHHHHTTT---TCTTSTTHHHHTSCHHHHHHHHH
T ss_pred HHHH--hCCEEEEEECCHHHHHHHHHHHHHHHHHhhc---cCCchhhhcccCCCHHHHHHHHH
Confidence 4555 7999999999876555555655421 1110 11222223334778877766654
No 351
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=67.67 E-value=3.2 Score=37.71 Aligned_cols=14 Identities=14% Similarity=0.275 Sum_probs=12.3
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
.+.+.||+|+||||
T Consensus 131 vi~lvG~nGaGKTT 144 (328)
T 3e70_C 131 VIMFVGFNGSGKTT 144 (328)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 35688999999999
No 352
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=67.44 E-value=1 Score=38.76 Aligned_cols=21 Identities=5% Similarity=-0.064 Sum_probs=16.7
Q ss_pred HHHhhhcCCCchh---hhhhcCCc
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSA 103 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~ 103 (317)
+-+.||+|+|||| .++..+|.
T Consensus 28 igI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 28 IGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTG
T ss_pred EEEECCCCCCHHHHHHHHHHHhch
Confidence 4578999999999 77776664
No 353
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=67.41 E-value=8 Score=36.69 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=11.5
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++..|.|+|||.
T Consensus 25 ~l~~~~tGsGKT~ 37 (556)
T 4a2p_A 25 ALICAPTGSGKTF 37 (556)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEEcCCCChHHH
Confidence 4688999999998
No 354
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=67.33 E-value=5.3 Score=37.47 Aligned_cols=45 Identities=13% Similarity=0.005 Sum_probs=29.7
Q ss_pred EEEeeeeecCCcEEEecc-----cCCeeeeeeccccCccCcCcccEEEEe
Q psy7780 3 VGTLEEIIDDNHAIVSTS-----VGSEHYVSILSFVDKDQLEPGCSVLLN 47 (317)
Q Consensus 3 ~~~~~~~l~~~~~~v~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~ 47 (317)
+.-++|+++|+.....+. .++.-+.=-.+.+.+..|+.||.|.-.
T Consensus 58 ~~g~le~~~~g~gflr~~~~~y~~~~~d~yvs~~~ir~~~lr~gd~v~g~ 107 (427)
T 3l0o_A 58 GEGVLEIHPEGFGFLRRIEDNLLPSNDDIYISPSQIRKFNLNTGDIISGV 107 (427)
T ss_dssp EEEEEEECTTSCEEEECGGGTTCCCSSCEEECHHHHHHTTCCTTCEEEEE
T ss_pred EEEEEEEcCCCceEeeCCccCCCCCCCCeeeCHHHHHhcCCCCCCEEEEE
Confidence 445788888877666654 333333333566777889999998754
No 355
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=66.84 E-value=1.5 Score=36.95 Aligned_cols=26 Identities=12% Similarity=0.075 Sum_probs=18.1
Q ss_pred HHHhhhcCCCchh---hhhhcC--CceEEEE
Q psy7780 83 ELIQKYLGDGPKL---AVANQT--SATFLRV 108 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~--~~~~~~v 108 (317)
+.|.|+.|+|||| .+++.+ +.+++..
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 3578999999999 555554 4555544
No 356
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=66.38 E-value=1.1 Score=36.21 Aligned_cols=22 Identities=23% Similarity=0.119 Sum_probs=16.9
Q ss_pred hhHHHhhhcCCCchh---hhhhcCC
Q psy7780 81 GSELIQKYLGDGPKL---AVANQTS 102 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~~ 102 (317)
|..++.|+.|+|||+ |++.-++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 445789999999999 6665543
No 357
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=66.28 E-value=1.8 Score=39.17 Aligned_cols=41 Identities=20% Similarity=0.166 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhh
Q psy7780 267 LSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRK 307 (317)
Q Consensus 267 ~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~ 307 (317)
-.|+++..+|..|++.-..+....=+.++|.+-+.+.+.++
T Consensus 268 ~~grn~a~iiE~aa~n~~lk~~G~~~a~~f~~r~~~~i~~~ 308 (312)
T 1knx_A 268 SPGRKTSEIIESAVIDFKLKHSGYNSALDFIENQKAILKRK 308 (312)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHGGGG
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcc
Confidence 35667778888777765554444455677777777766554
No 358
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=66.15 E-value=5.1 Score=27.51 Aligned_cols=35 Identities=23% Similarity=0.099 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHH
Q psy7780 267 LSGADIKAICTEAGLMALRERRMKVTNEDFKKSKE 301 (317)
Q Consensus 267 ~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~ 301 (317)
+.-.-+..++.+|...|...++.+|+.+|+..|++
T Consensus 35 ~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 35 YLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 34556778899999999999999999999998875
No 359
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=65.65 E-value=8.1 Score=37.10 Aligned_cols=14 Identities=21% Similarity=0.195 Sum_probs=11.5
Q ss_pred CceEeecccccccc
Q psy7780 137 PSIVFIDEIDAVGT 150 (317)
Q Consensus 137 P~Ii~iDEiD~l~~ 150 (317)
-.+|+|||+|.+..
T Consensus 227 ~~~lViDEah~l~~ 240 (563)
T 3i5x_A 227 VDYKVLDEADRLLE 240 (563)
T ss_dssp CCEEEEETHHHHTS
T ss_pred ceEEEEeCHHHHhc
Confidence 46889999999863
No 360
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=65.51 E-value=1 Score=43.63 Aligned_cols=22 Identities=14% Similarity=0.010 Sum_probs=18.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA 103 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~ 103 (317)
.+.|.|++|||||| ++|+.++.
T Consensus 397 ~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 397 SIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred EEEecccCCCCHHHHHHHHHHHHHH
Confidence 46789999999999 89998874
No 361
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=65.47 E-value=0.88 Score=39.09 Aligned_cols=20 Identities=20% Similarity=0.134 Sum_probs=16.0
Q ss_pred HHHhhhcCCCchh---hhhhcCC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS 102 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~ 102 (317)
+.|.|++|+|||| .+++.++
T Consensus 24 i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 24 ITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 5689999999999 6666554
No 362
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=65.43 E-value=1.6 Score=36.44 Aligned_cols=64 Identities=19% Similarity=0.265 Sum_probs=33.7
Q ss_pred HHHhhhcCCCchh---hhhhc---CCceEEEEech--------hhhhhhcCCc-----hHHHHHHHHHHHhhCCceEeec
Q psy7780 83 ELIQKYLGDGPKL---AVANQ---TSATFLRVVGS--------ELIQKYLGDG-----PKLVRELFRVAEEHAPSIVFID 143 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~---~~~~~~~v~~s--------~l~~~~~g~~-----~~~l~~~f~~a~~~~P~Ii~iD 143 (317)
++++|++|+|||+ .+|+. .+..+..+... .+.+ ..|.. .....++++.+.. ...+|+||
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s-~~g~~~~a~~~~~~~~i~~~~~~-~~dvViID 88 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVS-HMGEKEQAVAIKNSREILKYFEE-DTEVIAID 88 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEEC-TTSCEEECEEESSSTHHHHHCCT-TCSEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHh-hcCCceeeEeeCCHHHHHHHHhc-cCCEEEEE
Confidence 5689999999998 22222 35444444311 0111 11211 0111345555432 24799999
Q ss_pred ccccc
Q psy7780 144 EIDAV 148 (317)
Q Consensus 144 EiD~l 148 (317)
|+.-+
T Consensus 89 Eaqfl 93 (191)
T 1xx6_A 89 EVQFF 93 (191)
T ss_dssp SGGGS
T ss_pred CCCCC
Confidence 98875
No 363
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=64.95 E-value=1.4 Score=35.60 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=15.5
Q ss_pred HHHhhhcCCCchh---hhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~ 101 (317)
..|.||.|+|||| +++..+
T Consensus 36 v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 36 VYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 4588999999999 776655
No 364
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=64.60 E-value=6.3 Score=35.65 Aligned_cols=13 Identities=15% Similarity=0.046 Sum_probs=11.4
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
+.+.|+||+||||
T Consensus 59 i~i~G~~g~GKST 71 (341)
T 2p67_A 59 LGVTGTPGAGKST 71 (341)
T ss_dssp EEEEECTTSCHHH
T ss_pred EEEEcCCCCCHHH
Confidence 4578999999999
No 365
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=64.56 E-value=3.1 Score=40.54 Aligned_cols=33 Identities=9% Similarity=0.010 Sum_probs=23.4
Q ss_pred HHHhhhcCCCchh---hhhhcCC---ceEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS---ATFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~---~~~~~v~~s~l~~ 115 (317)
+.|.|+||+|||| .+++.++ .++..+++-.+..
T Consensus 375 I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~ 413 (546)
T 2gks_A 375 VWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRT 413 (546)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHH
T ss_pred EEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhh
Confidence 5689999999999 6776653 4666666544433
No 366
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=64.43 E-value=5 Score=37.90 Aligned_cols=13 Identities=15% Similarity=-0.087 Sum_probs=11.6
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
+.+.|.||+|||+
T Consensus 26 V~lvG~~nvGKST 38 (456)
T 4dcu_A 26 VAIVGRPNVGKST 38 (456)
T ss_dssp EEEECSSSSSHHH
T ss_pred EEEECCCCCcHHH
Confidence 4688999999999
No 367
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=64.42 E-value=1.4 Score=37.53 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=15.6
Q ss_pred HHHhhhcCCCchh---hhhhcCC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS 102 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~ 102 (317)
..+.||+|+|||| +++....
T Consensus 19 i~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 19 YIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhccCC
Confidence 4578999999999 6666553
No 368
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.37 E-value=20 Score=27.08 Aligned_cols=52 Identities=17% Similarity=0.109 Sum_probs=43.1
Q ss_pred CeEEEeeeeecCCcEEEecccCCeeeeeeccccCc-cCcCcccEEEEeccccc
Q psy7780 1 MSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDK-DQLEPGCSVLLNHKVHA 52 (317)
Q Consensus 1 ~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~ 52 (317)
+..|.|.+.+.++..-|...++...+..+++-+.. --+++||.|.+....+.
T Consensus 16 e~~g~V~~~lgn~~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~~~yd 68 (111)
T 2dgy_A 16 QQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPIEEG 68 (111)
T ss_dssp CEEEEEEECCSSSEEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEEECSSC
T ss_pred eEEEEEEEeCCCCEEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEEecccC
Confidence 46899999999999999999999999999887654 34679999999876543
No 369
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=64.31 E-value=8.2 Score=31.03 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhh
Q psy7780 271 DIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYR 306 (317)
Q Consensus 271 dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~ 306 (317)
-+..+..+|...|...++++|+.+|+..|++..+.+
T Consensus 115 f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~~~ 150 (154)
T 1f1e_A 115 ATEELGEKAAEYADEDGRKTVQGEDVEKAITYSMPK 150 (154)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcCCc
Confidence 456788889999999999999999999999987754
No 370
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=64.16 E-value=1.3 Score=40.25 Aligned_cols=27 Identities=4% Similarity=-0.065 Sum_probs=20.9
Q ss_pred ccCCCcceeEEEeCCCCHHHHHHHHHHHh
Q psy7780 218 LIRPGRIDRKIEFPLPDEKTKRRIFNIHT 246 (317)
Q Consensus 218 l~rpgRf~~~I~~~~P~~~~r~~Il~~~l 246 (317)
+.. .||.+|++..|....+..++++..
T Consensus 223 l~~--~~D~~I~Vda~~d~~~~R~i~Rd~ 249 (321)
T 3tqc_A 223 VSD--FFDFSLFVDAQAQVIQKWYIDRVL 249 (321)
T ss_dssp GGG--GCSEEEEEECCHHHHHHHHHHHHH
T ss_pred hhh--hcCeEEEEECCHHHHHHHHHHhcc
Confidence 555 799999999997777777776664
No 371
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=63.77 E-value=27 Score=33.49 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=26.5
Q ss_pred hHHHhhhcCCCchh---hhhhc-----CCceEEEEechhhhhhhcCCchHHHHHHHHHHHh
Q psy7780 82 SELIQKYLGDGPKL---AVANQ-----TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE 134 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~-----~~~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~ 134 (317)
-.++.|++|+|||+ -+++. -++.+|-. +|+-.+.+.++++....
T Consensus 167 r~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~---------iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 167 KIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG---------VGERTREGNDLYMEMKE 218 (498)
T ss_dssp CEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE---------ESCCSHHHHHHHHHHHH
T ss_pred eEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE---------cccCcHHHHHHHHhhhc
Confidence 45677889999998 22222 13332221 56666777777766654
No 372
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=63.34 E-value=1.3 Score=36.38 Aligned_cols=13 Identities=15% Similarity=0.110 Sum_probs=11.2
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
..+.|++|+|||+
T Consensus 7 i~i~G~sGsGKTT 19 (169)
T 1xjc_A 7 WQVVGYKHSGKTT 19 (169)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 3478999999999
No 373
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=63.23 E-value=3 Score=37.48 Aligned_cols=13 Identities=31% Similarity=0.662 Sum_probs=11.4
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++.|+.|+||||
T Consensus 7 ~~i~G~~GaGKTT 19 (318)
T 1nij_A 7 TLLTGFLGAGKTT 19 (318)
T ss_dssp EEEEESSSSSCHH
T ss_pred EEEEecCCCCHHH
Confidence 3578999999999
No 374
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=63.07 E-value=9.6 Score=36.94 Aligned_cols=13 Identities=15% Similarity=0.322 Sum_probs=11.2
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++..|.|+|||+
T Consensus 63 vlv~apTGsGKTl 75 (579)
T 3sqw_A 63 VIARAKTGTGKTF 75 (579)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEEcCCCcHHHH
Confidence 4677899999998
No 375
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=62.98 E-value=10 Score=27.49 Aligned_cols=32 Identities=25% Similarity=0.244 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHH
Q psy7780 271 DIKAICTEAGLMALRERRMKVTNEDFKKSKES 302 (317)
Q Consensus 271 dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~ 302 (317)
-|..+..+|...|...++.+|+.+|+..|++.
T Consensus 43 Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~ 74 (93)
T 1n1j_A 43 FISFITSEASERCHQEKRKTINGEDILFAMST 74 (93)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 46677788888898999999999999999974
No 376
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=62.92 E-value=7.3 Score=33.59 Aligned_cols=13 Identities=23% Similarity=0.097 Sum_probs=11.7
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
+++.|.+|+|||+
T Consensus 39 I~lvG~~g~GKSS 51 (262)
T 3def_A 39 VLVLGKGGVGKSS 51 (262)
T ss_dssp EEEEECTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 4688999999999
No 377
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=62.49 E-value=50 Score=28.70 Aligned_cols=26 Identities=15% Similarity=0.040 Sum_probs=17.7
Q ss_pred HHhhhcCCCchh-------hhhhcCCceEEEEec
Q psy7780 84 LIQKYLGDGPKL-------AVANQTSATFLRVVG 110 (317)
Q Consensus 84 Ll~G~pGtGKT~-------aiA~~~~~~~~~v~~ 110 (317)
.+.|..|+|||+ ++|+ .|..+..|++
T Consensus 45 ~v~~KGGvGKTT~a~nLA~~La~-~G~~VlliD~ 77 (307)
T 3end_A 45 AVYGKGGIGKSTTSSNLSAAFSI-LGKRVLQIGC 77 (307)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEEE
T ss_pred EEECCCCccHHHHHHHHHHHHHH-CCCeEEEEeC
Confidence 344899999999 3333 3667766654
No 378
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=62.46 E-value=9.6 Score=28.81 Aligned_cols=61 Identities=15% Similarity=0.124 Sum_probs=41.4
Q ss_pred HHHHHHHHHhcCCCCCcCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q psy7780 237 TKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESV 303 (317)
Q Consensus 237 ~r~~Il~~~l~~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v 303 (317)
....|++..- ...+..+ ....+.+ +.-.-+..++.+|..+|-..++.+|+.+|+..|+++.
T Consensus 12 ~I~Ri~r~~g-~~rIS~~-a~~~l~e----~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~ 72 (111)
T 3b0c_T 12 LIKQIFSHYV-KTPVTRD-AYKIVEK----CSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQ 72 (111)
T ss_dssp HHHHHHHHHH-CSCBCHH-HHHHHHH----HHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHCC-CCccCHH-HHHHHHH----HHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHC
Confidence 3445776663 3333322 1233333 3445677889999999999999999999999999873
No 379
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=62.22 E-value=1.3 Score=36.69 Aligned_cols=13 Identities=15% Similarity=0.079 Sum_probs=11.9
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
+++.|++|+|||+
T Consensus 15 i~~~G~~g~GKTs 27 (218)
T 1nrj_B 15 IIIAGPQNSGKTS 27 (218)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 5789999999999
No 380
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=62.22 E-value=1.6 Score=37.56 Aligned_cols=21 Identities=14% Similarity=0.015 Sum_probs=16.5
Q ss_pred hhHHHhhhcCCCchh---hhhhcC
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~ 101 (317)
+...+.||.|+|||+ +++..+
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhccc
Confidence 456789999999999 666544
No 381
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=62.10 E-value=4.7 Score=34.62 Aligned_cols=13 Identities=15% Similarity=0.215 Sum_probs=11.7
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
+++.|.||+|||+
T Consensus 24 I~lvG~~g~GKSS 36 (247)
T 3lxw_A 24 LILVGRTGAGKSA 36 (247)
T ss_dssp EEEESSTTSSHHH
T ss_pred EEEECCCCCcHHH
Confidence 4688999999998
No 382
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=61.87 E-value=1.5 Score=34.85 Aligned_cols=19 Identities=32% Similarity=0.338 Sum_probs=14.8
Q ss_pred hhHHHhhhcCCCchh---hhhh
Q psy7780 81 GSELIQKYLGDGPKL---AVAN 99 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~ 99 (317)
|-.+++||.|+|||+ |+.-
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999 5543
No 383
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=61.81 E-value=1.7 Score=37.10 Aligned_cols=20 Identities=15% Similarity=0.046 Sum_probs=15.7
Q ss_pred HHHhhhcCCCchh---hhhhcCC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS 102 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~ 102 (317)
..+.||.|+|||| +++.-..
T Consensus 33 ~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 4578999999999 7776553
No 384
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=61.62 E-value=1.7 Score=39.09 Aligned_cols=19 Identities=5% Similarity=-0.045 Sum_probs=15.0
Q ss_pred HHHhhhcCCCchh---hhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~ 101 (317)
+.+.||+|+|||| +++..+
T Consensus 129 vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 129 LAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhhhc
Confidence 4688999999999 666544
No 385
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=61.39 E-value=1.8 Score=36.49 Aligned_cols=13 Identities=15% Similarity=0.048 Sum_probs=11.3
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
..+.||.|+||||
T Consensus 25 ~~liG~nGsGKST 37 (208)
T 3b85_A 25 VFGLGPAGSGKTY 37 (208)
T ss_dssp EEEECCTTSSTTH
T ss_pred EEEECCCCCCHHH
Confidence 3478999999999
No 386
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=61.29 E-value=1.3 Score=42.02 Aligned_cols=29 Identities=14% Similarity=0.091 Sum_probs=19.4
Q ss_pred hHHHhhhcCCCchh---hhhhcC---CceEEEEec
Q psy7780 82 SELIQKYLGDGPKL---AVANQT---SATFLRVVG 110 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~---~~~~~~v~~ 110 (317)
.+++.|+||+|||| .+|..+ |..+..+++
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 46789999999999 455443 344555543
No 387
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=61.11 E-value=1.8 Score=37.19 Aligned_cols=20 Identities=15% Similarity=0.071 Sum_probs=15.6
Q ss_pred HHHhhhcCCCchh---hhhhcCC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS 102 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~ 102 (317)
..+.||.|+|||| +++.-..
T Consensus 34 ~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 34 VSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 4578999999999 6666553
No 388
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=60.92 E-value=5.7 Score=37.43 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=12.0
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
.+.+.|++|+||||
T Consensus 100 vi~i~G~~GsGKTT 113 (425)
T 2ffh_A 100 LWFLVGLQGSGKTT 113 (425)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 45677999999998
No 389
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=60.90 E-value=1.8 Score=39.95 Aligned_cols=19 Identities=21% Similarity=0.116 Sum_probs=15.0
Q ss_pred HHHhhhcCCCchh---hhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~ 101 (317)
..+.||.|||||| ++|.-.
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 4578999999999 666654
No 390
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=60.80 E-value=11 Score=37.50 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=19.0
Q ss_pred hHHHhhhcCCCchh----hhhhc---CCceEEEEec
Q psy7780 82 SELIQKYLGDGPKL----AVANQ---TSATFLRVVG 110 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----aiA~~---~~~~~~~v~~ 110 (317)
..++.+|.|+|||+ ++.+. .+...+.+.+
T Consensus 41 ~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P 76 (720)
T 2zj8_A 41 NALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVP 76 (720)
T ss_dssp EEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECS
T ss_pred cEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 46789999999998 22211 2456666654
No 391
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=60.66 E-value=17 Score=24.81 Aligned_cols=47 Identities=19% Similarity=0.123 Sum_probs=37.4
Q ss_pred EEEeeeeecCCcEEEecccCCeeeeeeccccCc--cCcCcccEEEEecc
Q psy7780 3 VGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDK--DQLEPGCSVLLNHK 49 (317)
Q Consensus 3 ~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~ 49 (317)
.|.|++.+.++..-|....+..+...+++-+.. ..+.+||+|.+...
T Consensus 9 ~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~~ 57 (71)
T 1ah9_A 9 QGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELT 57 (71)
T ss_dssp CEEEEEECSSSEEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCEEC
T ss_pred EEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCccCCCCCEEEEEEe
Confidence 488999999888888777788888888887754 45668999988754
No 392
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=60.62 E-value=1.9 Score=37.33 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=14.8
Q ss_pred HHHhhhcCCCchh---hhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~ 101 (317)
..+.||.|+|||| +++.-.
T Consensus 27 ~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 27 CVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 3477999999999 666654
No 393
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=60.22 E-value=1.5 Score=35.92 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=11.4
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
..+.|++|+|||+
T Consensus 9 i~i~G~sGsGKTT 21 (174)
T 1np6_A 9 LAFAAWSGTGKTT 21 (174)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEEeCCCCCHHH
Confidence 3578999999999
No 394
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=60.21 E-value=16 Score=35.95 Aligned_cols=13 Identities=23% Similarity=0.284 Sum_probs=11.6
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++.+|.|+|||+
T Consensus 31 ~iv~~~TGsGKTl 43 (696)
T 2ykg_A 31 TIICAPTGCGKTF 43 (696)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEEcCCCchHHH
Confidence 5688999999998
No 395
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=59.99 E-value=9.2 Score=38.19 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=11.9
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
...+.|++|.|||+
T Consensus 194 ~~vlta~RGRGKSa 207 (671)
T 2zpa_A 194 VAAVTAARGRGKSA 207 (671)
T ss_dssp EEEEEECTTSSHHH
T ss_pred eEEEecCCCCCHHH
Confidence 34788999999999
No 396
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=59.73 E-value=1.6 Score=36.40 Aligned_cols=26 Identities=12% Similarity=0.070 Sum_probs=18.7
Q ss_pred HHhhhcCCCchh---hhhhcC---CceEEEEe
Q psy7780 84 LIQKYLGDGPKL---AVANQT---SATFLRVV 109 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~---~~~~~~v~ 109 (317)
.|.|+.|+|||| .+++.+ |.+++...
T Consensus 4 ~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 4 TFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 478999999999 566554 55665553
No 397
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=59.52 E-value=2 Score=38.61 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=12.2
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
.+.+.||+|+||||
T Consensus 104 vi~lvG~nGsGKTT 117 (304)
T 1rj9_A 104 VVLVVGVNGVGKTT 117 (304)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCcHHH
Confidence 45678999999999
No 398
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=59.45 E-value=17 Score=30.91 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=11.7
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
+++.|.||+|||+
T Consensus 25 I~lvG~~g~GKSt 37 (260)
T 2xtp_A 25 IILVGKTGTGKSA 37 (260)
T ss_dssp EEEEECTTSCHHH
T ss_pred EEEECCCCCCHHH
Confidence 5688999999998
No 399
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=59.07 E-value=14 Score=28.32 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHH
Q psy7780 271 DIKAICTEAGLMALRERRMKVTNEDFKKSKESV 303 (317)
Q Consensus 271 dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v 303 (317)
-+.+++++|...+-..++++|+.+|+.-|+++.
T Consensus 80 ~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~ 112 (121)
T 2ly8_A 80 FLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 112 (121)
T ss_dssp HHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhC
Confidence 355678888889989999999999999998863
No 400
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=58.86 E-value=2.1 Score=39.49 Aligned_cols=19 Identities=16% Similarity=0.004 Sum_probs=14.8
Q ss_pred HHHhhhcCCCchh---hhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~ 101 (317)
..+.||+|||||| ++|.-.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHHCCC
Confidence 4477999999999 666544
No 401
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=58.83 E-value=2.1 Score=36.84 Aligned_cols=15 Identities=20% Similarity=0.239 Sum_probs=0.0
Q ss_pred HhhhcCCCchh---hhhh
Q psy7780 85 IQKYLGDGPKL---AVAN 99 (317)
Q Consensus 85 l~G~pGtGKT~---aiA~ 99 (317)
+.||.|+|||| +++.
T Consensus 36 i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 36 VVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp EECSTTSSHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHhc
No 402
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=58.77 E-value=1.7 Score=35.21 Aligned_cols=14 Identities=21% Similarity=0.126 Sum_probs=12.3
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
-+++.|++|+|||+
T Consensus 50 ~i~vvG~~g~GKSs 63 (193)
T 2ged_A 50 SIIIAGPQNSGKTS 63 (193)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 35789999999999
No 403
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=58.75 E-value=17 Score=25.65 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=40.9
Q ss_pred eEEEeeeeecCCcEEEecccCCeeeeeeccccCc--cCcCcccEEEEeccccc
Q psy7780 2 SVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDK--DQLEPGCSVLLNHKVHA 52 (317)
Q Consensus 2 ~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~ 52 (317)
.-|.|++.+.++..-|...++..+...+++-+.. ..+.+||.|.+......
T Consensus 16 ~~G~Vik~l~n~~f~V~l~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~yd 68 (79)
T 3i4o_A 16 VEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYD 68 (79)
T ss_dssp EEEEEEEEETTTEEEEEETTSCEEEEEECHHHHHTTCCCCTTCEEEEEEETTE
T ss_pred EEEEEEEEcCCCEEEEEeCCCCEEEEEeCcceecCCccCCCCCEEEEEECccC
Confidence 3589999999999999888888898998887643 45889999988775443
No 404
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=58.53 E-value=2.1 Score=37.44 Aligned_cols=20 Identities=15% Similarity=0.047 Sum_probs=15.7
Q ss_pred HHHhhhcCCCchh---hhhhcCC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS 102 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~ 102 (317)
..+.||.|+|||| +++.-..
T Consensus 35 ~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCCCHHHHHHHHhcCCC
Confidence 4578999999999 7776553
No 405
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=58.52 E-value=10 Score=34.36 Aligned_cols=13 Identities=8% Similarity=-0.102 Sum_probs=11.3
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
+.+.|.+|+|||+
T Consensus 37 I~vvG~~~sGKSS 49 (360)
T 3t34_A 37 IAVVGGQSSGKSS 49 (360)
T ss_dssp EEEECBTTSSHHH
T ss_pred EEEECCCCCcHHH
Confidence 4578999999999
No 406
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=58.34 E-value=2.1 Score=39.46 Aligned_cols=19 Identities=16% Similarity=0.113 Sum_probs=15.0
Q ss_pred HHHhhhcCCCchh---hhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~ 101 (317)
..+.||.|||||| ++|.-.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 4577999999999 666654
No 407
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=58.14 E-value=2.2 Score=39.74 Aligned_cols=19 Identities=16% Similarity=0.086 Sum_probs=15.0
Q ss_pred HHHhhhcCCCchh---hhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~ 101 (317)
.-+.||+|||||| ++|.-.
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHHcCC
Confidence 4478999999999 666654
No 408
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=58.14 E-value=2.1 Score=38.80 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHhhh
Q psy7780 267 LSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRK 307 (317)
Q Consensus 267 ~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~v~~~~ 307 (317)
-.|+++..+|..|++.-..+....=+.++|.+-+.+.+.++
T Consensus 264 ~pgrn~a~iie~aa~n~~lk~~G~~~a~~f~~r~~~~i~~~ 304 (314)
T 1ko7_A 264 RPGRNVAVIIEVAAMNYRLNIMGINTAEEFNDRLNAEILRN 304 (314)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHC------
T ss_pred CCCCCHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhcc
Confidence 35667777887777765554444455667766666655444
No 409
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=57.88 E-value=1.8 Score=35.53 Aligned_cols=18 Identities=11% Similarity=0.052 Sum_probs=13.7
Q ss_pred HHHhhhcCCCchh---hhhhc
Q psy7780 83 ELIQKYLGDGPKL---AVANQ 100 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~ 100 (317)
+.+.|++|+|||+ .++..
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 3577999999999 55543
No 410
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=57.84 E-value=21 Score=35.46 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=20.6
Q ss_pred HHhhhcCCCchh---hhhhcCCceEEEEech
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATFLRVVGS 111 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~~~v~~s 111 (317)
++.|.+|+|||. .++.+.+.+++.|...
T Consensus 32 ~l~g~tgs~kt~~~a~~~~~~~~~~lvv~~~ 62 (664)
T 1c4o_A 32 TLLGATGTGKTVTMAKVIEALGRPALVLAPN 62 (664)
T ss_dssp EEEECTTSCHHHHHHHHHHHHTCCEEEEESS
T ss_pred EEEcCCCcHHHHHHHHHHHHhCCCEEEEecC
Confidence 477999999999 3555667777776544
No 411
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=57.81 E-value=2.2 Score=37.12 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=0.0
Q ss_pred HhhhcCCCchh---hhhh
Q psy7780 85 IQKYLGDGPKL---AVAN 99 (317)
Q Consensus 85 l~G~pGtGKT~---aiA~ 99 (317)
+.||.|+|||| +++.
T Consensus 38 liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 38 IIGPNGSGKSTLINVITG 55 (257)
T ss_dssp EECSTTSSHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHhC
No 412
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=57.68 E-value=2.2 Score=39.22 Aligned_cols=19 Identities=16% Similarity=0.064 Sum_probs=14.9
Q ss_pred HHHhhhcCCCchh---hhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~ 101 (317)
..+.||.|||||| ++|.-.
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 4578999999999 666544
No 413
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=57.38 E-value=2.2 Score=38.40 Aligned_cols=57 Identities=5% Similarity=-0.069 Sum_probs=33.1
Q ss_pred ccccCCCcceeEEEeCCCCHHHHHHHHHHHhc--CCCCCcCCCHHHHHHhCCCCCHHHHHHHHH
Q psy7780 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTS--RMTLAEDVNLQELIMAKDDLSGADIKAICT 277 (317)
Q Consensus 216 ~al~rpgRf~~~I~~~~P~~~~r~~Il~~~l~--~~~~~~~~~~~~ia~~t~g~s~~dl~~l~~ 277 (317)
+.+.. .||..|++..|....+...++++.. ... .-+.+.+.....|+|..+..+.+.
T Consensus 212 ~~l~~--~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~---~r~~~~~~~~~~g~s~e~a~~~v~ 270 (312)
T 3aez_A 212 LMVSD--LFDFSLYVDARIEDIEQWYVSRFLAMRTTA---FADPESHFHHYAAFSDSQAVVAAR 270 (312)
T ss_dssp CCGGG--GCSEEEEEEECHHHHHHHHHHHHHHHTTTG---GGSTTSTTGGGTTCCHHHHHHHHH
T ss_pred HHHHH--hcCcEEEEECCHHHHHHHHHHHHHHHHhcc---ccCcchhhhcccCCCHHHHHHHHH
Confidence 45555 7899999998876555555655542 111 112222333445778877776654
No 414
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=57.21 E-value=2.3 Score=39.41 Aligned_cols=19 Identities=16% Similarity=0.100 Sum_probs=14.7
Q ss_pred HHHhhhcCCCchh---hhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~ 101 (317)
..+.||.|||||| ++|.-.
T Consensus 40 ~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCChHHHHHHHHHcCC
Confidence 4578999999999 666544
No 415
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=57.06 E-value=1.8 Score=38.79 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=14.8
Q ss_pred hHHHhhhcCCCchh---hhhhc
Q psy7780 82 SELIQKYLGDGPKL---AVANQ 100 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~ 100 (317)
.+.+.||.|+|||| .+|..
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999 44443
No 416
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=57.04 E-value=2.3 Score=39.34 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=15.0
Q ss_pred HHHhhhcCCCchh---hhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~ 101 (317)
..+.||.|||||| ++|.-.
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCcHHHHHHHHHHcCC
Confidence 4578999999999 666554
No 417
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=56.89 E-value=3.1 Score=42.39 Aligned_cols=16 Identities=19% Similarity=-0.101 Sum_probs=13.6
Q ss_pred hhhHHHhhhcCCCchh
Q psy7780 80 VGSELIQKYLGDGPKL 95 (317)
Q Consensus 80 ~g~~Ll~G~pGtGKT~ 95 (317)
+....+.||.|+||||
T Consensus 576 g~i~~I~GpNGsGKST 591 (765)
T 1ewq_A 576 HELVLITGPNMAGKST 591 (765)
T ss_dssp SCEEEEESCSSSSHHH
T ss_pred CcEEEEECCCCCChHH
Confidence 3467789999999999
No 418
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=56.80 E-value=2.7 Score=35.93 Aligned_cols=20 Identities=10% Similarity=0.091 Sum_probs=15.8
Q ss_pred hHHHhhhcCCCchh---hhhhcC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~ 101 (317)
...+.||.|+|||| +++...
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 35588999999999 666655
No 419
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=56.70 E-value=3 Score=41.35 Aligned_cols=14 Identities=21% Similarity=0.083 Sum_probs=12.1
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.+|.|+|||.
T Consensus 24 ~~ll~~~TGsGKTl 37 (699)
T 4gl2_A 24 NIIICLPTGCGKTR 37 (699)
T ss_dssp CEEECCCTTSCHHH
T ss_pred CEEEEcCCCCcHHH
Confidence 35788999999998
No 420
>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A
Probab=56.67 E-value=20 Score=28.69 Aligned_cols=54 Identities=24% Similarity=0.283 Sum_probs=42.4
Q ss_pred EEEeeeeecCCcEEEecccCCeeeeeeccccCccCcCcccEEEEeccccccccccc
Q psy7780 3 VGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLS 58 (317)
Q Consensus 3 ~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 58 (317)
.|++...-++..+=|. ..+..+-+.++..++...|.+|..|.||.. +.+++..+
T Consensus 10 ygt~l~~~~d~tadV~-t~GRkMrv~vsP~vd~~~L~~Gq~V~LNEa-l~VVea~~ 63 (153)
T 2wfw_A 10 YGVLLSVHEDKTVDVF-TSGRKMRLTCSPNIDTDTLALGQTVRLNEA-LTIVEAGT 63 (153)
T ss_dssp EEEEEEECTTSCEEEE-ETTEEEEECBCTTCCGGGCCTTCEEEECTT-CCEEEECC
T ss_pred eEEEEEEcCCCeEEEE-ECCcEEEEEeCCCCCHHHCCCCCEEEECCc-eEEEEccC
Confidence 5788887777655544 477889999999999999999999999984 45555444
No 421
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=56.61 E-value=2.4 Score=36.50 Aligned_cols=19 Identities=21% Similarity=0.163 Sum_probs=15.3
Q ss_pred HHHhhhcCCCchh---hhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~ 101 (317)
..+.||.|+|||| +++.-.
T Consensus 35 ~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 35 VTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999 666654
No 422
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=56.61 E-value=2.4 Score=35.98 Aligned_cols=15 Identities=13% Similarity=0.177 Sum_probs=0.0
Q ss_pred HhhhcCCCchh---hhhh
Q psy7780 85 IQKYLGDGPKL---AVAN 99 (317)
Q Consensus 85 l~G~pGtGKT~---aiA~ 99 (317)
+.||.|+|||| +++.
T Consensus 40 iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 40 FHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp EECCTTSSHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHhc
No 423
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=56.60 E-value=1.7 Score=35.13 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=12.8
Q ss_pred HHhhhcCCCchh---hhhh
Q psy7780 84 LIQKYLGDGPKL---AVAN 99 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~ 99 (317)
.+.|+||+|||+ .++.
T Consensus 6 ~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 6 MIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEESCTTSSHHHHHHHHTC
T ss_pred EEECCCCCCHHHHHHHHhc
Confidence 577999999999 5544
No 424
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=56.60 E-value=8.6 Score=40.76 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=13.8
Q ss_pred HHhhCCceEeecccccccc
Q psy7780 132 AEEHAPSIVFIDEIDAVGT 150 (317)
Q Consensus 132 a~~~~P~Ii~iDEiD~l~~ 150 (317)
.....-.+|+|||+|.+..
T Consensus 192 l~~~~l~~lViDEaH~l~~ 210 (1104)
T 4ddu_A 192 LSQKRFDFVFVDDVDAVLK 210 (1104)
T ss_dssp HHTSCCSEEEESCHHHHTT
T ss_pred hcccCcCEEEEeCCCcccc
Confidence 3334567999999988764
No 425
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=56.52 E-value=2.5 Score=36.70 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=17.0
Q ss_pred HHhhhcCCCchh---hhhhcCCceE
Q psy7780 84 LIQKYLGDGPKL---AVANQTSATF 105 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~~~~ 105 (317)
.|.|.+|+|||+ .++..+|++.
T Consensus 5 ~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 5 FLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEECCCCCCHHHHHHHHHHhcCCeE
Confidence 478999999999 5555578765
No 426
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=56.44 E-value=1.7 Score=33.81 Aligned_cols=13 Identities=15% Similarity=0.069 Sum_probs=11.4
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
+++.|+||+|||+
T Consensus 6 i~v~G~~~~GKSs 18 (167)
T 1kao_A 6 VVVLGSGGVGKSA 18 (167)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 4578999999999
No 427
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=56.30 E-value=5.7 Score=39.00 Aligned_cols=13 Identities=23% Similarity=0.319 Sum_probs=11.4
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++..|.|+|||+
T Consensus 62 ~lv~~pTGsGKTl 74 (591)
T 2v1x_A 62 VFLVMPTGGGKSL 74 (591)
T ss_dssp EEEECCTTSCTTH
T ss_pred EEEEECCCChHHH
Confidence 4678899999998
No 428
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=56.11 E-value=1.9 Score=35.24 Aligned_cols=18 Identities=11% Similarity=0.052 Sum_probs=13.9
Q ss_pred HHHhhhcCCCchh---hhhhc
Q psy7780 83 ELIQKYLGDGPKL---AVANQ 100 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~ 100 (317)
+.+.|++|+|||+ .++..
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 4588999999999 55443
No 429
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=56.03 E-value=2.5 Score=36.46 Aligned_cols=20 Identities=10% Similarity=-0.052 Sum_probs=15.1
Q ss_pred hHHHhhhcCCCchh---hhhhcC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~ 101 (317)
...+.||.|+|||| +++.-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 35578999999999 555543
No 430
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=55.94 E-value=1.7 Score=33.69 Aligned_cols=12 Identities=17% Similarity=0.019 Sum_probs=10.9
Q ss_pred HHhhhcCCCchh
Q psy7780 84 LIQKYLGDGPKL 95 (317)
Q Consensus 84 Ll~G~pGtGKT~ 95 (317)
++.|++|+|||+
T Consensus 5 ~v~G~~~~GKSs 16 (161)
T 2dyk_A 5 VIVGRPNVGKSS 16 (161)
T ss_dssp EEECCTTSSHHH
T ss_pred EEECCCCCCHHH
Confidence 577999999999
No 431
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=55.85 E-value=30 Score=31.19 Aligned_cols=14 Identities=14% Similarity=0.048 Sum_probs=12.2
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
-+.+.|+||+|||+
T Consensus 169 ~v~lvG~~gvGKST 182 (357)
T 2e87_A 169 TVVIAGHPNVGKST 182 (357)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 35688999999999
No 432
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=55.83 E-value=19 Score=24.63 Aligned_cols=36 Identities=17% Similarity=0.237 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHH
Q psy7780 267 LSGADIKAICTEAGLMALRERRMKVTNEDFKKSKES 302 (317)
Q Consensus 267 ~s~~dl~~l~~~A~~~a~~~~~~~it~~d~~~al~~ 302 (317)
|.-+-...+.++|..+|-..++..|+.+|+.-|++.
T Consensus 30 ~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 30 FTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 345566788899999999999999999999999875
No 433
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=55.76 E-value=2.1 Score=38.16 Aligned_cols=20 Identities=15% Similarity=0.217 Sum_probs=15.4
Q ss_pred HHHhhhcCCCchh---hhhhcCC
Q psy7780 83 ELIQKYLGDGPKL---AVANQTS 102 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~ 102 (317)
+.+.|++|+|||| .++..++
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 4588999999999 5665554
No 434
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=55.68 E-value=11 Score=28.71 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=38.8
Q ss_pred eEEEeeeeecCCcEEEecccCCeeeeeeccccC-ccCcCcccEEEEecc
Q psy7780 2 SVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVD-KDQLEPGCSVLLNHK 49 (317)
Q Consensus 2 ~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~ 49 (317)
..|.|++.+.++...|....+..+...+++-+. ...+.+||.|.+...
T Consensus 34 ~~G~Vi~~lgn~~y~V~~~dG~~~l~~i~GK~Rk~I~i~~GD~V~ve~~ 82 (117)
T 2oqk_A 34 EYGQVQRMLGNGRLDAYCFDGQKRLCHIRGKMRKKVWVNPGDIVLVSLR 82 (117)
T ss_dssp EEEEEEEEEETTEEEEEETTSCEEEEECCHHHHHHSCCCTTCEEEEEEC
T ss_pred EEEEEEEEcCCCEEEEEeCCCCEEEEEEcCceecCCcCCCCCEEEEEEE
Confidence 468999999999888877778888888887654 345669999999865
No 435
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=55.67 E-value=1.8 Score=43.12 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=14.2
Q ss_pred hhhHHHhhhcCCCchh
Q psy7780 80 VGSELIQKYLGDGPKL 95 (317)
Q Consensus 80 ~g~~Ll~G~pGtGKT~ 95 (317)
.||.++.|.||||||+
T Consensus 15 ~~~~lV~AgaGSGKT~ 30 (673)
T 1uaa_A 15 TGPCLVLAGAGSGKTR 30 (673)
T ss_dssp SSEEEECCCTTSCHHH
T ss_pred CCCEEEEeCCCCChHH
Confidence 4678899999999998
No 436
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=55.65 E-value=1.8 Score=35.98 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=14.5
Q ss_pred HHHhhhcCCCchh---hhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~ 101 (317)
+.+.|++|+|||+ .++..+
T Consensus 33 i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 33 VNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 4678999999999 555543
No 437
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=55.63 E-value=3.1 Score=35.61 Aligned_cols=27 Identities=11% Similarity=0.044 Sum_probs=17.2
Q ss_pred HHHhhhcCCCchh---hhhhc--CCceEEEEe
Q psy7780 83 ELIQKYLGDGPKL---AVANQ--TSATFLRVV 109 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~--~~~~~~~v~ 109 (317)
..+.|.+|+|||| .+|.. .|..+..++
T Consensus 17 ~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 17 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4578999999999 33322 355554444
No 438
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=55.53 E-value=12 Score=35.65 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=33.7
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc------------eEEEEechhhhhhhcCCchHHHHHHHHHHHhh---CCceEeec
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEEH---APSIVFID 143 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~------------~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~---~P~Ii~iD 143 (317)
-+++.|++|+|||+ .+|+...+ .++.|-+ -+|+..+.+.++.+..... ..++++.-
T Consensus 149 r~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~------~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~ 222 (464)
T 3gqb_B 149 KLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFA------AMGITQRELSYFIQEFERTGALSRSVLFLN 222 (464)
T ss_dssp BCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEE------EEEECHHHHHHHHHHHHHTSGGGGEEEEEE
T ss_pred EEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEE------EecCchHHHHHHHHHhhhcccccceEEEEE
Confidence 45677889999999 67776644 1222211 1456666777776665542 23566543
Q ss_pred c
Q psy7780 144 E 144 (317)
Q Consensus 144 E 144 (317)
-
T Consensus 223 t 223 (464)
T 3gqb_B 223 K 223 (464)
T ss_dssp E
T ss_pred C
Confidence 3
No 439
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=55.47 E-value=1.8 Score=34.27 Aligned_cols=13 Identities=8% Similarity=-0.138 Sum_probs=11.3
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
+.+.|+||+|||+
T Consensus 6 v~lvG~~gvGKSt 18 (165)
T 2wji_A 6 IALIGNPNVGKST 18 (165)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 3577999999999
No 440
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=55.42 E-value=1.8 Score=33.90 Aligned_cols=12 Identities=25% Similarity=0.230 Sum_probs=10.9
Q ss_pred HHhhhcCCCchh
Q psy7780 84 LIQKYLGDGPKL 95 (317)
Q Consensus 84 Ll~G~pGtGKT~ 95 (317)
++.|+||+|||+
T Consensus 6 ~~vG~~~~GKSs 17 (166)
T 3q72_A 6 LLLGAPGVGKSA 17 (166)
T ss_dssp EEEESTTSSHHH
T ss_pred EEECCCCCCHHH
Confidence 577999999999
No 441
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=55.37 E-value=1.8 Score=34.12 Aligned_cols=13 Identities=15% Similarity=0.069 Sum_probs=11.4
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
+++.|+||+|||+
T Consensus 7 i~i~G~~~vGKSs 19 (175)
T 2nzj_A 7 VVLLGDPGVGKTS 19 (175)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCccHHH
Confidence 4578999999999
No 442
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=55.25 E-value=2.6 Score=36.49 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=0.0
Q ss_pred HhhhcCCCchh---hhhh
Q psy7780 85 IQKYLGDGPKL---AVAN 99 (317)
Q Consensus 85 l~G~pGtGKT~---aiA~ 99 (317)
+.||.|+|||| +++.
T Consensus 40 i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 40 IVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp EECSTTSSHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHhc
No 443
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=55.21 E-value=1.8 Score=33.76 Aligned_cols=13 Identities=8% Similarity=-0.097 Sum_probs=11.5
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
+++.|++|+|||+
T Consensus 8 i~v~G~~~~GKss 20 (168)
T 1z2a_A 8 MVVVGNGAVGKSS 20 (168)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECcCCCCHHH
Confidence 4678999999999
No 444
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=55.13 E-value=2.6 Score=37.24 Aligned_cols=15 Identities=20% Similarity=0.062 Sum_probs=0.0
Q ss_pred HhhhcCCCchh---hhhh
Q psy7780 85 IQKYLGDGPKL---AVAN 99 (317)
Q Consensus 85 l~G~pGtGKT~---aiA~ 99 (317)
+.||.|+|||| +++.
T Consensus 39 iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 39 ILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp EECCTTSSHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHc
No 445
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=54.89 E-value=2.6 Score=36.92 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=0.0
Q ss_pred HhhhcCCCchh---hhhh
Q psy7780 85 IQKYLGDGPKL---AVAN 99 (317)
Q Consensus 85 l~G~pGtGKT~---aiA~ 99 (317)
+.||.|+|||| +++.
T Consensus 55 liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 55 VIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp EECCTTSSHHHHHHHHTT
T ss_pred EEcCCCCcHHHHHHHHHc
No 446
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=54.84 E-value=2.7 Score=36.43 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=0.0
Q ss_pred HhhhcCCCchh---hhhh
Q psy7780 85 IQKYLGDGPKL---AVAN 99 (317)
Q Consensus 85 l~G~pGtGKT~---aiA~ 99 (317)
+.||.|+|||| +++.
T Consensus 34 l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 34 LMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp EECSTTSSHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHhC
No 447
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=54.79 E-value=1.8 Score=33.48 Aligned_cols=13 Identities=15% Similarity=0.041 Sum_probs=11.4
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
+++.|++|+|||+
T Consensus 6 i~v~G~~~~GKss 18 (166)
T 2ce2_X 6 LVVVGAGGVGKSA 18 (166)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 4578999999999
No 448
>1vc3_B L-aspartate-alpha-decarboxylase heavy chain; tetramer, pyruvoyl group, riken structural genomics/proteomi initiative, RSGI; 1.50A {Thermus thermophilus} PDB: 2eeo_B
Probab=54.74 E-value=3.7 Score=30.23 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=35.4
Q ss_pred HHhhhcCCCchh---hhhhcCC--ceEEEEechhhhhhhcCCchHHHHHHHHHHHhhCCceEeeccccccc
Q psy7780 84 LIQKYLGDGPKL---AVANQTS--ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVG 149 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~~--~~~~~v~~s~l~~~~~g~~~~~l~~~f~~a~~~~P~Ii~iDEiD~l~ 149 (317)
.+.|++|+|-=. |.|+... =.++-++-..+- .+.++.+.|.|+|+||=..+.
T Consensus 35 vI~GerGSG~I~lNGAAArl~~~GD~vII~aY~~~~--------------~~e~~~~~P~vV~vd~~N~i~ 91 (96)
T 1vc3_B 35 ALPGERGSGVIGINGAAAHLVKPGDLVILVAYGVFD--------------EEEARNLKPTVVLVDERNRIL 91 (96)
T ss_dssp CEEECTTTTCEEEEGGGGGTCCTTCEEEEEEEEEEC--------------HHHHTTCCCEEEEECTTCCEE
T ss_pred EEEccCCCCeEEEchHHHccCCCCCEEEEEECccCC--------------HHHHhcCCCEEEEECCCCCEE
Confidence 688999999877 6666553 344444433321 235788999999999876654
No 449
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=54.67 E-value=1.9 Score=33.84 Aligned_cols=13 Identities=15% Similarity=0.125 Sum_probs=11.3
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
+++.|+||+|||+
T Consensus 5 i~ivG~~~~GKSs 17 (169)
T 3q85_A 5 VMLVGESGVGKST 17 (169)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 3578999999999
No 450
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=54.55 E-value=19 Score=36.37 Aligned_cols=14 Identities=29% Similarity=0.403 Sum_probs=11.6
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.+|.|+|||.
T Consensus 265 ~~ll~~~TGsGKTl 278 (797)
T 4a2q_A 265 NALICAPTGSGKTF 278 (797)
T ss_dssp CEEEECCTTSCHHH
T ss_pred CEEEEeCCCChHHH
Confidence 34678889999998
No 451
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=54.54 E-value=5.9 Score=37.85 Aligned_cols=22 Identities=23% Similarity=0.022 Sum_probs=16.9
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA 103 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~ 103 (317)
-+++.|++|+|||+ .+|+...+
T Consensus 154 r~~Ifgg~G~GKt~Ll~~Ia~~~~~ 178 (469)
T 2c61_A 154 KLPIFSASGLPHNEIALQIARQASV 178 (469)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45667889999998 67776654
No 452
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=54.46 E-value=1.9 Score=34.11 Aligned_cols=13 Identities=15% Similarity=0.041 Sum_probs=11.6
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
+++.|++|+|||+
T Consensus 10 i~v~G~~~~GKSs 22 (177)
T 1wms_A 10 VILLGDGGVGKSS 22 (177)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 4688999999999
No 453
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=54.38 E-value=28 Score=34.66 Aligned_cols=28 Identities=21% Similarity=0.159 Sum_probs=18.4
Q ss_pred HHHhhhcCCCchh----hhhhcCCceEEEEech
Q psy7780 83 ELIQKYLGDGPKL----AVANQTSATFLRVVGS 111 (317)
Q Consensus 83 ~Ll~G~pGtGKT~----aiA~~~~~~~~~v~~s 111 (317)
.++.+|.|+|||+ .+.+ .+...+.+...
T Consensus 235 vlv~ApTGSGKT~a~~l~ll~-~g~~vLVl~PT 266 (666)
T 3o8b_A 235 AHLHAPTGSGKSTKVPAAYAA-QGYKVLVLNPS 266 (666)
T ss_dssp EEEECCTTSCTTTHHHHHHHH-TTCCEEEEESC
T ss_pred EEEEeCCchhHHHHHHHHHHH-CCCeEEEEcch
Confidence 4788999999998 2222 35455555554
No 454
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=54.29 E-value=11 Score=30.54 Aligned_cols=56 Identities=11% Similarity=0.027 Sum_probs=32.9
Q ss_pred hhcCCCchh-------hhhhcCCceEEEEech--hhhhhhcCC----------chHHHHHHHHHHHhhCCceEeecc
Q psy7780 87 KYLGDGPKL-------AVANQTSATFLRVVGS--ELIQKYLGD----------GPKLVRELFRVAEEHAPSIVFIDE 144 (317)
Q Consensus 87 G~pGtGKT~-------aiA~~~~~~~~~v~~s--~l~~~~~g~----------~~~~l~~~f~~a~~~~P~Ii~iDE 144 (317)
+..|+|||+ ++|+ .|..+..+++- .-...|.+. ....+..+++..+.. ..+|+||=
T Consensus 9 ~kgG~GKTt~a~~la~~la~-~g~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-yD~viiD~ 83 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSR-SGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLAD-YDFAIVDG 83 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTT-SSEEEEEC
T ss_pred CCCCccHHHHHHHHHHHHHH-CCCeEEEEECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCC-CCEEEEEC
Confidence 558999999 3333 57777777652 112222221 125677777776554 46888873
No 455
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=54.16 E-value=2.7 Score=36.91 Aligned_cols=15 Identities=20% Similarity=0.171 Sum_probs=0.0
Q ss_pred HhhhcCCCchh---hhhh
Q psy7780 85 IQKYLGDGPKL---AVAN 99 (317)
Q Consensus 85 l~G~pGtGKT~---aiA~ 99 (317)
+.||.|+|||| +++.
T Consensus 42 liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 42 IIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp EECCTTSCHHHHHHHHTS
T ss_pred EECCCCCcHHHHHHHHhc
No 456
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=54.04 E-value=2.7 Score=36.91 Aligned_cols=18 Identities=11% Similarity=0.150 Sum_probs=13.7
Q ss_pred HHhhhcCCCchh---hhhhcC
Q psy7780 84 LIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 84 Ll~G~pGtGKT~---aiA~~~ 101 (317)
.+.||+|+|||| +++...
T Consensus 6 ~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 6 MVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEESSSSSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHhCCC
Confidence 467999999999 555543
No 457
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=54.04 E-value=45 Score=28.66 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=21.8
Q ss_pred HHHHHhhCCceEeecccccccccccCCCCCchhHHHHHHHHHHHHh
Q psy7780 129 FRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQL 174 (317)
Q Consensus 129 f~~a~~~~P~Ii~iDEiD~l~~~r~~~~~~~~~~~~~~l~~ll~~l 174 (317)
+..|-...|.|+++||--+-. +......+.+++..+
T Consensus 166 lAraL~~~p~lllLDEPts~L----------D~~~~~~i~~~l~~l 201 (260)
T 2ghi_A 166 IARCLLKDPKIVIFDEATSSL----------DSKTEYLFQKAVEDL 201 (260)
T ss_dssp HHHHHHHCCSEEEEECCCCTT----------CHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEECccccC----------CHHHHHHHHHHHHHh
Confidence 444555669999999954322 233445566666665
No 458
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=53.99 E-value=2 Score=33.57 Aligned_cols=13 Identities=8% Similarity=-0.079 Sum_probs=11.4
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
+++.|++|+|||+
T Consensus 6 i~v~G~~~~GKss 18 (170)
T 1ek0_A 6 LVLLGEAAVGKSS 18 (170)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 4578999999999
No 459
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=53.96 E-value=2.4 Score=35.38 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=15.8
Q ss_pred hhHHHhhhcCCCchh---hhhhcC
Q psy7780 81 GSELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 81 g~~Ll~G~pGtGKT~---aiA~~~ 101 (317)
|..+++||.|+|||+ |+.-.+
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 346789999999999 555433
No 460
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=53.95 E-value=6.4 Score=41.77 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=19.1
Q ss_pred hHHHhhhcCCCchh----hhhhc--CCceEEEEech
Q psy7780 82 SELIQKYLGDGPKL----AVANQ--TSATFLRVVGS 111 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----aiA~~--~~~~~~~v~~s 111 (317)
..++.+|.|+|||+ ++... -+...+.+...
T Consensus 201 dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~Pt 236 (1108)
T 3l9o_A 201 SVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPI 236 (1108)
T ss_dssp CEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCc
Confidence 45788999999998 33332 24455555554
No 461
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=53.80 E-value=2.7 Score=35.60 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=14.8
Q ss_pred HHHhhhcCCCchh---hhhhc
Q psy7780 83 ELIQKYLGDGPKL---AVANQ 100 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~ 100 (317)
+-|.|+.|+|||| .++..
T Consensus 23 i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEECSTTSCHHHHHHTTGGG
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 4588999999999 66665
No 462
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=53.78 E-value=2 Score=33.40 Aligned_cols=13 Identities=15% Similarity=0.082 Sum_probs=11.4
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
+++.|++|+|||+
T Consensus 7 i~v~G~~~~GKss 19 (168)
T 1u8z_A 7 VIMVGSGGVGKSA 19 (168)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 4578999999999
No 463
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=53.67 E-value=3 Score=40.75 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=18.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT 104 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~ 104 (317)
-.++.|++|||||+ .+|+..+..
T Consensus 229 r~~I~g~~g~GKT~L~~~ia~~~~~~ 254 (588)
T 3mfy_A 229 TAAIPGPAGSGKTVTQHQLAKWSDAQ 254 (588)
T ss_dssp EEEECSCCSHHHHHHHHHHHHHSSCS
T ss_pred eEEeecCCCCCHHHHHHHHHhccCCC
Confidence 56788999999999 777765554
No 464
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=53.64 E-value=31 Score=35.85 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=14.8
Q ss_pred eechhhHHHhhh-----cCCCchh
Q psy7780 77 LRVVGSELIQKY-----LGDGPKL 95 (317)
Q Consensus 77 ~~i~g~~Ll~G~-----pGtGKT~ 95 (317)
..+++|.|+.|- .|+|||.
T Consensus 84 Q~~~ip~LlqG~IaeakTGeGKTL 107 (997)
T 2ipc_A 84 QLIGGAVLHEGKIAEMKTGEGKTL 107 (997)
T ss_dssp HHHHHHHHHTTSEEECCSTHHHHH
T ss_pred HHhhcccccCCceeeccCCCchHH
Confidence 345568888887 5999998
No 465
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=53.57 E-value=3.2 Score=36.02 Aligned_cols=20 Identities=20% Similarity=0.069 Sum_probs=15.7
Q ss_pred hHHHhhhcCCCchh---hhhhcC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~ 101 (317)
...+.||.|+|||| +++.-.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 35588999999999 666654
No 466
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=53.57 E-value=2 Score=35.33 Aligned_cols=13 Identities=8% Similarity=-0.079 Sum_probs=11.7
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
+.+.|++|+|||+
T Consensus 29 v~lvG~~g~GKST 41 (210)
T 1pui_A 29 VAFAGRSNAGKSS 41 (210)
T ss_dssp EEEEECTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 4688999999999
No 467
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=53.45 E-value=2.3 Score=34.04 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=13.3
Q ss_pred HHHhhhcCCCchh---hhhh
Q psy7780 83 ELIQKYLGDGPKL---AVAN 99 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~ 99 (317)
+.+.|+||+|||+ +++.
T Consensus 7 i~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 3578999999999 5554
No 468
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=53.44 E-value=2.9 Score=36.35 Aligned_cols=19 Identities=11% Similarity=-0.041 Sum_probs=15.0
Q ss_pred HHHhhhcCCCchh---hhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~ 101 (317)
..+.||.|+|||| +++.-.
T Consensus 34 ~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 34 LAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999 666554
No 469
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=53.44 E-value=25 Score=27.76 Aligned_cols=51 Identities=8% Similarity=0.044 Sum_probs=42.3
Q ss_pred eEEEeeeeecCCcEEEecccCCeeeeeeccccCc-cCcCcccEEEEeccccc
Q psy7780 2 SVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDK-DQLEPGCSVLLNHKVHA 52 (317)
Q Consensus 2 ~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~ 52 (317)
..|.|.+.+.++..-|....+...+..+++-+.. --+++|+.|.+....+.
T Consensus 33 ~~g~V~e~lgn~~f~V~l~nG~~~La~I~GKmRk~IwI~~GD~VlVe~~~yd 84 (143)
T 1d7q_A 33 EYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQ 84 (143)
T ss_dssp EEEEEEEECSSSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEECSSSS
T ss_pred EEEEEEEEcCCCEEEEEeCCCCEEEEEecccceeeEEecCCCEEEEeeccCC
Confidence 5799999999999999989999999998886654 35679999999876543
No 470
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=53.32 E-value=6.5 Score=36.88 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=28.7
Q ss_pred EEEeeeeecCCcEEEecc-----cCCeeeeeeccccCccCcCcccEEEEe
Q psy7780 3 VGTLEEIIDDNHAIVSTS-----VGSEHYVSILSFVDKDQLEPGCSVLLN 47 (317)
Q Consensus 3 ~~~~~~~l~~~~~~v~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~ 47 (317)
+.-++|+++|+.....+. .++.-+.=-.+.+.+..|+.||.|.-.
T Consensus 54 ~~g~le~~~~g~gflr~~~~~~~~~~~d~yvs~~~ir~~~lr~gd~v~g~ 103 (422)
T 3ice_A 54 GDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGK 103 (422)
T ss_dssp EEEEEEECTTSCEEEECGGGTTCCCTTCEEBCHHHHHHHTCCTTCEEEEE
T ss_pred EEEEEEEcCCCceEeeCCCcCCCCCCCCeeeCHHHHHhcCCCCCCEEEEE
Confidence 445788888877666653 233322223566777889999998643
No 471
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=53.27 E-value=2.9 Score=36.46 Aligned_cols=20 Identities=10% Similarity=0.004 Sum_probs=15.8
Q ss_pred hHHHhhhcCCCchh---hhhhcC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~ 101 (317)
...+.||.|+|||| +++.-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 35688999999999 666654
No 472
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=53.15 E-value=2 Score=33.57 Aligned_cols=13 Identities=23% Similarity=0.118 Sum_probs=11.4
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
+++.|++|+|||+
T Consensus 6 i~v~G~~~~GKss 18 (170)
T 1g16_A 6 ILLIGDSGVGKSC 18 (170)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEECcCCCCHHH
Confidence 3578999999999
No 473
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=52.97 E-value=3.3 Score=36.58 Aligned_cols=20 Identities=10% Similarity=0.091 Sum_probs=15.6
Q ss_pred hHHHhhhcCCCchh---hhhhcC
Q psy7780 82 SELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~ 101 (317)
...+.||.|+|||| +++...
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 35688999999999 666554
No 474
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=52.96 E-value=2.1 Score=33.92 Aligned_cols=13 Identities=23% Similarity=0.130 Sum_probs=11.7
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
+++.|++|+|||+
T Consensus 11 i~v~G~~~~GKSs 23 (182)
T 1ky3_A 11 VIILGDSGVGKTS 23 (182)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 4688999999999
No 475
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=52.95 E-value=2.4 Score=34.23 Aligned_cols=13 Identities=8% Similarity=-0.120 Sum_probs=11.7
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
+++.|++|+|||+
T Consensus 26 i~v~G~~~~GKSs 38 (195)
T 1svi_A 26 IALAGRSNVGKSS 38 (195)
T ss_dssp EEEEEBTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 4688999999999
No 476
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=52.91 E-value=2.1 Score=33.49 Aligned_cols=13 Identities=15% Similarity=0.010 Sum_probs=11.5
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
+++.|++|+|||+
T Consensus 9 i~v~G~~~~GKSs 21 (170)
T 1z0j_A 9 VCLLGDTGVGKSS 21 (170)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECcCCCCHHH
Confidence 4678999999999
No 477
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=52.90 E-value=3 Score=36.40 Aligned_cols=15 Identities=13% Similarity=0.195 Sum_probs=0.0
Q ss_pred HhhhcCCCchh---hhhh
Q psy7780 85 IQKYLGDGPKL---AVAN 99 (317)
Q Consensus 85 l~G~pGtGKT~---aiA~ 99 (317)
+.||.|+|||| +++.
T Consensus 46 l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 46 LIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp EECCTTSSHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHhc
No 478
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=52.90 E-value=3 Score=36.57 Aligned_cols=15 Identities=27% Similarity=0.288 Sum_probs=0.0
Q ss_pred HhhhcCCCchh---hhhh
Q psy7780 85 IQKYLGDGPKL---AVAN 99 (317)
Q Consensus 85 l~G~pGtGKT~---aiA~ 99 (317)
+.||.|+|||| +++.
T Consensus 51 l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 51 IMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EECCTTSSHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHhC
No 479
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=52.85 E-value=50 Score=27.33 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCCCCccccCCCcceeEEEeCCCCHHHHHHH
Q psy7780 200 GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRI 241 (317)
Q Consensus 200 ~~v~vI~tTN~~~~Ld~al~rpgRf~~~I~~~~P~~~~r~~I 241 (317)
.++++|=+..........++. ..|..|-+-.|+......+
T Consensus 119 yD~viiD~p~~~~~~~~~~l~--~ad~viiv~~~~~~~~~~~ 158 (245)
T 3ea0_A 119 YDYIIVDFGASIDHVGVWVLE--HLDELCIVTTPSLQSLRRA 158 (245)
T ss_dssp CSEEEEEEESSCCTTHHHHGG--GCSEEEEEECSSHHHHHHH
T ss_pred CCEEEEeCCCCCchHHHHHHH--HCCEEEEEecCcHHHHHHH
Confidence 467777666555555455565 6777777777876655544
No 480
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=52.81 E-value=3 Score=38.93 Aligned_cols=18 Identities=17% Similarity=0.051 Sum_probs=14.4
Q ss_pred HHHhhhcCCCchh---hhhhc
Q psy7780 83 ELIQKYLGDGPKL---AVANQ 100 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~ 100 (317)
..+.||+|||||| ++|.-
T Consensus 50 ~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 50 VGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEESTTSSHHHHHHHHHTC
T ss_pred EEEECCCCChHHHHHHHHhCC
Confidence 4578999999999 66654
No 481
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=52.69 E-value=2.4 Score=36.90 Aligned_cols=12 Identities=8% Similarity=-0.064 Sum_probs=10.9
Q ss_pred HHhhhcCCCchh
Q psy7780 84 LIQKYLGDGPKL 95 (317)
Q Consensus 84 Ll~G~pGtGKT~ 95 (317)
.+.|+||+|||+
T Consensus 7 ~lvG~~g~GKTT 18 (271)
T 3k53_A 7 ALVGNPNVGKTT 18 (271)
T ss_dssp EEEECSSSSHHH
T ss_pred EEECCCCCCHHH
Confidence 577999999999
No 482
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=52.58 E-value=3.7 Score=34.94 Aligned_cols=27 Identities=11% Similarity=0.041 Sum_probs=17.9
Q ss_pred HHHhhhcCCCchh-hh-----hhcCCceEEEEe
Q psy7780 83 ELIQKYLGDGPKL-AV-----ANQTSATFLRVV 109 (317)
Q Consensus 83 ~Ll~G~pGtGKT~-ai-----A~~~~~~~~~v~ 109 (317)
++++|+.|+|||+ ++ +...+..++.+.
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 5689999999998 11 233455555554
No 483
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=52.54 E-value=3.1 Score=36.44 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=0.0
Q ss_pred HhhhcCCCchh---hhhh
Q psy7780 85 IQKYLGDGPKL---AVAN 99 (317)
Q Consensus 85 l~G~pGtGKT~---aiA~ 99 (317)
+.||.|+|||| +++.
T Consensus 38 liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 38 VAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp EECSTTSSHHHHHHHHTT
T ss_pred EECCCCCcHHHHHHHHhC
No 484
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=52.49 E-value=3.5 Score=36.26 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=0.0
Q ss_pred HhhhcCCCchh---hhhhcCC
Q psy7780 85 IQKYLGDGPKL---AVANQTS 102 (317)
Q Consensus 85 l~G~pGtGKT~---aiA~~~~ 102 (317)
+.||.|+|||| +++....
T Consensus 50 i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 50 LVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EECSTTSSHHHHHHHHTTSSC
T ss_pred EECCCCCCHHHHHHHHhcCCC
No 485
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=52.49 E-value=2.4 Score=33.95 Aligned_cols=17 Identities=12% Similarity=-0.003 Sum_probs=13.5
Q ss_pred HHHhhhcCCCchh---hhhh
Q psy7780 83 ELIQKYLGDGPKL---AVAN 99 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~ 99 (317)
+.+.|++|+|||+ +++.
T Consensus 10 i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 10 IALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 4578999999999 5554
No 486
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=52.47 E-value=2.1 Score=33.43 Aligned_cols=13 Identities=15% Similarity=-0.064 Sum_probs=11.4
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
+++.|++|+|||+
T Consensus 6 i~v~G~~~~GKss 18 (172)
T 2erx_A 6 VAVFGAGGVGKSS 18 (172)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 4578999999999
No 487
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=52.45 E-value=11 Score=38.37 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=17.4
Q ss_pred HHhhhcCCCchh----hhhhc--CCceEEEEech
Q psy7780 84 LIQKYLGDGPKL----AVANQ--TSATFLRVVGS 111 (317)
Q Consensus 84 Ll~G~pGtGKT~----aiA~~--~~~~~~~v~~s 111 (317)
|+.|+.|+|||. ++... .+...+.+..+
T Consensus 393 Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPt 426 (780)
T 1gm5_A 393 LLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPT 426 (780)
T ss_dssp EEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSC
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 567789999998 22221 25556666554
No 488
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=52.42 E-value=2.1 Score=33.50 Aligned_cols=13 Identities=8% Similarity=-0.202 Sum_probs=11.5
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
+++.|++|+|||+
T Consensus 9 i~v~G~~~~GKss 21 (170)
T 1z08_A 9 VVLLGEGCVGKTS 21 (170)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEECcCCCCHHH
Confidence 4678999999999
No 489
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=52.32 E-value=3.6 Score=40.22 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=18.4
Q ss_pred hHHHhhhcCCCchh---hhhhcCCceE
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSATF 105 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~~ 105 (317)
-.++.|++|+|||+ .+|+..+..+
T Consensus 223 r~~Ifg~~g~GKT~l~~~ia~~~~~~v 249 (578)
T 3gqb_A 223 TAAIPGPFGSGKSVTQQSLAKWSNADV 249 (578)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHSSCSE
T ss_pred EEeeeCCCCccHHHHHHHHHhccCCCE
Confidence 55778999999999 7777665543
No 490
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=52.20 E-value=6.1 Score=37.63 Aligned_cols=22 Identities=18% Similarity=0.007 Sum_probs=16.6
Q ss_pred hHHHhhhcCCCchh---hhhhcCCc
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSA 103 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~ 103 (317)
-+++.|++|+|||+ .+|+...+
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHh
Confidence 45677889999998 67766644
No 491
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=52.11 E-value=26 Score=36.78 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=20.3
Q ss_pred hHHHhhhcCCCchh----hhhhc--CCceEEEEech
Q psy7780 82 SELIQKYLGDGPKL----AVANQ--TSATFLRVVGS 111 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----aiA~~--~~~~~~~v~~s 111 (317)
..++.+|.|+|||. +++.. -+...+.+...
T Consensus 103 ~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~Pt 138 (1010)
T 2xgj_A 103 SVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPI 138 (1010)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CEEEECCCCCChHHHHHHHHHHHhccCCeEEEECCh
Confidence 45788999999998 33332 35566666654
No 492
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=52.08 E-value=2.1 Score=39.32 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=15.0
Q ss_pred HHHhhhcCCCchh---hhhhcC
Q psy7780 83 ELIQKYLGDGPKL---AVANQT 101 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~ 101 (317)
..+.||.|||||| ++|.-.
T Consensus 29 ~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 29 FVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEECCCCccHHHHHHHHHcCC
Confidence 4477999999999 666654
No 493
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=51.93 E-value=33 Score=35.46 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=11.1
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++.+|.|+|||.
T Consensus 266 ~ll~a~TGsGKTl 278 (936)
T 4a2w_A 266 ALICAPTGSGKTF 278 (936)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEEeCCCchHHH
Confidence 4677889999998
No 494
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=51.87 E-value=2.3 Score=41.55 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=24.0
Q ss_pred hHHHhhhcCCCchh---hhhhcCC----ceEEEEechhhhh
Q psy7780 82 SELIQKYLGDGPKL---AVANQTS----ATFLRVVGSELIQ 115 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~----~~~~~v~~s~l~~ 115 (317)
.+.|.|++|+|||| ++|..++ ..+..+++..+..
T Consensus 371 iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~ 411 (552)
T 3cr8_A 371 TVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRR 411 (552)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHH
Confidence 35688999999999 8887764 3455566655543
No 495
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=51.75 E-value=2.9 Score=38.22 Aligned_cols=23 Identities=17% Similarity=0.082 Sum_probs=18.1
Q ss_pred hHHHhhhcCCCchh---hhhhcCCce
Q psy7780 82 SELIQKYLGDGPKL---AVANQTSAT 104 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~---aiA~~~~~~ 104 (317)
...+.|++|+|||| +++......
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 45678999999999 777776654
No 496
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=51.66 E-value=3.4 Score=34.88 Aligned_cols=33 Identities=15% Similarity=0.079 Sum_probs=21.5
Q ss_pred HHHhhhcCCCchh---hhhhcCCc-eEEEEechhhhh
Q psy7780 83 ELIQKYLGDGPKL---AVANQTSA-TFLRVVGSELIQ 115 (317)
Q Consensus 83 ~Ll~G~pGtGKT~---aiA~~~~~-~~~~v~~s~l~~ 115 (317)
+++.|.||+||++ .+.+.++. .+..++.++.+.
T Consensus 14 I~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK 50 (202)
T 3ch4_B 14 LLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLK 50 (202)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHH
Confidence 5789999999999 33333543 244556666543
No 497
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=51.57 E-value=7.4 Score=37.46 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=11.4
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
.++..|.|+|||+
T Consensus 43 ~lv~apTGsGKTl 55 (523)
T 1oyw_A 43 CLVVMPTGGGKSL 55 (523)
T ss_dssp EEEECSCHHHHHH
T ss_pred EEEECCCCcHHHH
Confidence 4678899999998
No 498
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=51.50 E-value=2.6 Score=35.83 Aligned_cols=14 Identities=21% Similarity=0.216 Sum_probs=12.0
Q ss_pred hHHHhhhcCCCchh
Q psy7780 82 SELIQKYLGDGPKL 95 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~ 95 (317)
..++.|+.|||||+
T Consensus 78 ~~~i~g~TGsGKTt 91 (235)
T 3llm_A 78 VVIIRGATGCGKTT 91 (235)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEEeCCCCCcHH
Confidence 35788999999997
No 499
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=51.44 E-value=37 Score=37.76 Aligned_cols=29 Identities=10% Similarity=0.238 Sum_probs=18.8
Q ss_pred hHHHhhhcCCCchh----hhhhc----CCceEEEEec
Q psy7780 82 SELIQKYLGDGPKL----AVANQ----TSATFLRVVG 110 (317)
Q Consensus 82 ~~Ll~G~pGtGKT~----aiA~~----~~~~~~~v~~ 110 (317)
..++..|.|+|||+ ++.+. -+...+++.+
T Consensus 944 nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P 980 (1724)
T 4f92_B 944 NVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITP 980 (1724)
T ss_dssp CEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred cEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 35667889999998 44333 3445666654
No 500
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=51.40 E-value=2.2 Score=34.03 Aligned_cols=13 Identities=31% Similarity=0.250 Sum_probs=11.7
Q ss_pred HHHhhhcCCCchh
Q psy7780 83 ELIQKYLGDGPKL 95 (317)
Q Consensus 83 ~Ll~G~pGtGKT~ 95 (317)
+++.|++|+|||+
T Consensus 21 i~v~G~~~~GKss 33 (183)
T 1moz_A 21 ILILGLDGAGKTT 33 (183)
T ss_dssp EEEEEETTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 4688999999999
Done!