RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7780
(317 letters)
>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like
protein; Provisional.
Length = 438
Score = 518 bits (1337), Expect = 0.0
Identities = 237/353 (67%), Positives = 267/353 (75%), Gaps = 55/353 (15%)
Query: 1 MSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDD 60
+SVGTLEEIID+NHAIVS+SVG E+YV+ILSFVDK+QLEPGCSVLL++K H+VVG+L D+
Sbjct: 105 LSVGTLEEIIDENHAIVSSSVGPEYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDE 164
Query: 61 TDPMVTA--VANQTSATFLRVVGSE-LIQKYL---------------------------- 89
DP+V+ V ++ + G E IQ+
Sbjct: 165 VDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYG 224
Query: 90 --GDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDE 144
G G L AVAN+TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE+APSIVFIDE
Sbjct: 225 PPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDE 284
Query: 145 IDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKV 204
IDA+GTKRYD+ SGGE+EIQRTMLELLNQLDGFDSR GDVKV
Sbjct: 285 IDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR-------------------GDVKV 325
Query: 205 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAK 264
IMATNRIE+LDPALIRPGRIDRKIEFP PDEKTKRRIF IHTS+MTLAEDV+L+E IMAK
Sbjct: 326 IMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAK 385
Query: 265 DDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL 317
D+LSGADIKAICTEAGL+ALRERRMKVT DF+K+KE VLYRKK PEGLYL
Sbjct: 386 DELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLYRKKGNIPEGLYL 438
>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 406
Score = 413 bits (1063), Expect = e-144
Identities = 174/353 (49%), Positives = 223/353 (63%), Gaps = 55/353 (15%)
Query: 1 MSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDD 60
+ VGT+ E++DD AIV +S G + V+ILSFVD+D LEPG V LN +++V VL +
Sbjct: 73 LIVGTVLEVLDDGRAIVKSSTGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPE 132
Query: 61 TDPMVTA--VANQTSATF------------------LRVVGSELIQKYLGDGPK------ 94
DP V+ V + T+ L + EL ++ D PK
Sbjct: 133 VDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYG 192
Query: 95 ----------LAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDE 144
AVANQT ATF+RVVGSEL+QKY+G+G +LVRELF +A E APSI+FIDE
Sbjct: 193 PPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDE 252
Query: 145 IDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKV 204
IDA+G KR+DS + G+RE+QRTMLELLNQLDGFD R G+VKV
Sbjct: 253 IDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR-------------------GNVKV 293
Query: 205 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAK 264
IMATNR + LDPAL+RPGR DRKIEFPLPDE+ + I IHT +M LA+DV+L+ L
Sbjct: 294 IMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLT 353
Query: 265 DDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL 317
+ SGAD+KAICTEAG+ A+RERR +VT EDF K+ E V+ +KK+ + YL
Sbjct: 354 EGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVKKKKKLSSTARYL 406
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 331 bits (851), Expect = e-112
Identities = 150/347 (43%), Positives = 214/347 (61%), Gaps = 55/347 (15%)
Query: 3 VGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTD 62
V T+ E++DD +V +S G + V++ F+D+++L+PG V LN + A+V VL + D
Sbjct: 55 VATVLEVLDDGRVVVKSSGGPQFLVNVSPFIDREKLKPGARVALNQQSLAIVEVLPSEKD 114
Query: 63 PMVTA--VANQTSATF------------LR-VVGSELIQKYL------------------ 89
P V A V + T+ +R V L + L
Sbjct: 115 PRVQAMEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPP 174
Query: 90 GDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 146
G G L AVA++T+ATF+RVVGSEL+QK++G+G +LVRELF +A E APSI+FIDEID
Sbjct: 175 GTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEID 234
Query: 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIM 206
A+ KR DS + G+RE+QRT+++LL ++DGFD R G+VK+I
Sbjct: 235 AIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR-------------------GNVKIIA 275
Query: 207 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 266
ATNRI+ LDPA++RPGR DR IE PLPDE+ + I IHT +M LA+DV+L+EL +
Sbjct: 276 ATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEG 335
Query: 267 LSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPE 313
SGAD+KAICTEAG+ A+R+ R +VT EDF K+ E V+ ++++ + E
Sbjct: 336 ASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKEEKDSME 382
>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like
protein; Provisional.
Length = 398
Score = 310 bits (796), Expect = e-104
Identities = 145/345 (42%), Positives = 211/345 (61%), Gaps = 56/345 (16%)
Query: 3 VGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTD 62
+G E+ID N+ IVS++ GS +YV ILS ++++ L+P SV L+ HAVV +L + D
Sbjct: 69 IGQFLEMIDSNYGIVSSTSGSNYYVRILSTLNRELLKPNASVALHRHSHAVVDILPPEAD 128
Query: 63 PMVTAVANQT--------------------SATFLRVVGSELIQKYLGDGPK-------- 94
+ + A L + EL ++ D P+
Sbjct: 129 SSIQLLQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPP 188
Query: 95 --------LAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 146
AVA+ T+ATF+RVVGSE +QKYLG+GP++VR++FR+A E+APSI+FIDE+D
Sbjct: 189 GTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVD 248
Query: 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIM 206
++ TKR+D+ +G +RE+QR +LELLNQ+DGFD +VKVIM
Sbjct: 249 SIATKRFDAQTGADREVQRILLELLNQMDGFDQTT-------------------NVKVIM 289
Query: 207 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 266
ATNR +TLDPAL+RPGR+DRKIEFPLPD + KR IF TS+M L+E+V+L++ + +
Sbjct: 290 ATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEK 349
Query: 267 LSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEGT 311
+S ADI AIC EAG+ A+R+ R + +DF+K ++V+ RK +
Sbjct: 350 ISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVV-RKTDRD 393
>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family. Many
proteins may score above the trusted cutoff because an
internal.
Length = 364
Score = 295 bits (756), Expect = 7e-99
Identities = 146/338 (43%), Positives = 204/338 (60%), Gaps = 55/338 (16%)
Query: 3 VGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTD 62
VGT+ E++DDN +V +S G V++ +F+D+ L+PG V LN + +V VL D
Sbjct: 46 VGTVLEVLDDNRVVVKSSTGPNFVVNVSAFIDRKSLKPGARVALNQQTLTIVDVLPTSKD 105
Query: 63 PMVTA--VANQTSATFLRVVG------------------SELIQKYLGDGPK-------- 94
P+V V + + ++ + G EL ++ + PK
Sbjct: 106 PLVKGMEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPP 165
Query: 95 --------LAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 146
AVA++T+ATF+RVVGSEL++KY+G+G +LVRE+F +A+E APSI+FIDEID
Sbjct: 166 GTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEID 225
Query: 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIM 206
A+ KR DS + G+RE+QRT+++LL +LDGFD R G+VKVI
Sbjct: 226 AIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR-------------------GNVKVIA 266
Query: 207 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 266
ATNR + LDPAL+RPGR DR IE PLPD + + I IHT +M LAEDV+L+ + +
Sbjct: 267 ATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEG 326
Query: 267 LSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVL 304
SGAD+KAICTEAG+ A+RE R VT +DF K+ E VL
Sbjct: 327 ASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEKVL 364
>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational
modification, protein turnover, chaperones].
Length = 494
Score = 174 bits (442), Expect = 1e-50
Identities = 96/221 (43%), Positives = 126/221 (57%), Gaps = 29/221 (13%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA ++ + F+ V GSEL+ K++G+ K +RELF A + APSI+FIDEID++ + R S
Sbjct: 295 AVALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPS 354
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
G R R + +LL +LDG + V VI ATNR + LD
Sbjct: 355 EDGSGR---RVVGQLLTELDGIEKA-------------------EGVLVIAATNRPDDLD 392
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM--TLAEDVNLQELIMAKDDLSGADIK 273
PAL+RPGR DR I PLPD + + IF IH LAEDV+L+EL + SGADI
Sbjct: 393 PALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIA 452
Query: 274 AICTEAGLMALRERRM-KVTNEDF----KKSKESVLYRKKE 309
A+ EA L ALRE R +VT +DF KK K SV Y + +
Sbjct: 453 ALVREAALEALREARRREVTLDDFLDALKKIKPSVTYEEWK 493
Score = 106 bits (265), Expect = 1e-25
Identities = 79/211 (37%), Positives = 104/211 (49%), Gaps = 29/211 (13%)
Query: 100 QTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGG 159
A FL + G E++ KY+G+ +RELF AE+ APSI+FIDEIDA+ KR
Sbjct: 40 NEGAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDEIDALAPKRSSDQGEV 99
Query: 160 EREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALI 219
ER + +L L++ L G V VI ATNR + LDPA
Sbjct: 100 ERRVVAQLLALMDGLKR-----------------------GQVIVIGATNRPDGLDPAKR 136
Query: 220 RPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEA 279
RPGR DR+IE LPDE + I IHT M L + L SGAD+ A+ EA
Sbjct: 137 RPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEA 196
Query: 280 GLMALRERR------MKVTNEDFKKSKESVL 304
L LR + VT +DF+++ + VL
Sbjct: 197 ALRELRRAIDLVGEYIGVTEDDFEEALKKVL 227
>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH.
HflB(FtsH) is a pleiotropic protein required for correct
cell division in bacteria. It has ATP-dependent zinc
metalloprotease activity. It was formerly designated
cell division protein FtsH [Cellular processes, Cell
division, Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 495
Score = 170 bits (434), Expect = 3e-49
Identities = 76/210 (36%), Positives = 117/210 (55%), Gaps = 19/210 (9%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA + F + GS+ ++ ++G G VR+LF A+++AP I+FIDEIDAVG +R
Sbjct: 107 AVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG 166
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
GG E ++T+ +LL ++DGF + V VI ATNR + LD
Sbjct: 167 LGGGNDEREQTLNQLLVEMDGFGTNTG-------------------VIVIAATNRPDVLD 207
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PAL+RPGR DR++ LPD K + I +H LA DV+L+ + SGAD+ +
Sbjct: 208 PALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANL 267
Query: 276 CTEAGLMALRERRMKVTNEDFKKSKESVLY 305
EA L+A R+ + ++T D +++ + V+
Sbjct: 268 LNEAALLAARKNKTEITMNDIEEAIDRVIA 297
>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily. This
subfamily of the AAA family ATPases includes two members
each from three archaeal species. It also includes yeast
CDC48 (cell division control protein 48) and the human
ortholog, transitional endoplasmic reticulum ATPase
(valosin-containing protein). These proteins in
eukaryotes are involved in the budding and transfer of
membrane from the transitional endoplasmic reticulum to
the Golgi apparatus.
Length = 733
Score = 160 bits (407), Expect = 2e-44
Identities = 84/213 (39%), Positives = 117/213 (54%), Gaps = 21/213 (9%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA ++ A F+ V G E++ K++G+ K +RE+FR A + AP+I+F DEIDA+ R
Sbjct: 506 AVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPAR--G 563
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
R + +LL ++DG +V VI ATNR + LD
Sbjct: 564 ARFDTSVTDRIVNQLLTEMDGIQE-------------------LSNVVVIAATNRPDILD 604
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PAL+RPGR DR I P PDE+ ++ IF IHT M LAEDV+L+EL + +GADI+A+
Sbjct: 605 PALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAV 664
Query: 276 CTEAGLMALRERRMKVTNEDFKKSKESVLYRKK 308
C EA + ALRE E + +E L K
Sbjct: 665 CREAAMAALRESIGSPAKEKLEVGEEEFLKDLK 697
Score = 144 bits (364), Expect = 2e-38
Identities = 87/227 (38%), Positives = 124/227 (54%), Gaps = 41/227 (18%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVAN+ A F+ + G E++ KY G+ + +RE+F+ AEE+APSI+FIDEIDA+ KR +
Sbjct: 231 AVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV 290
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
GE E +R + +LL +DG R G V VI ATNR + LD
Sbjct: 291 T--GEVE-KRVVAQLLTLMDGLKGR-------------------GRVIVIGATNRPDALD 328
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PAL RPGR DR+I +PD++ ++ I +HT M LAEDV+L +L GAD+ A+
Sbjct: 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAAL 388
Query: 276 CTEAGLMALRE-------------------RRMKVTNEDFKKSKESV 303
EA + ALR + +KVT +DF ++ + V
Sbjct: 389 AKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMV 435
>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational
modification, protein turnover, chaperones].
Length = 596
Score = 147 bits (372), Expect = 6e-40
Identities = 78/210 (37%), Positives = 118/210 (56%), Gaps = 19/210 (9%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA + F + GS+ ++ ++G G VR+LF A+++AP I+FIDEIDAVG +R
Sbjct: 202 AVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG 261
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
GG E ++T+ +LL ++DGF V VI ATNR + LD
Sbjct: 262 LGGGNDEREQTLNQLLVEMDGFGGN-------------------EGVIVIAATNRPDVLD 302
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PAL+RPGR DR+I LPD K + +I +H LAEDV+L+++ SGAD+ +
Sbjct: 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANL 362
Query: 276 CTEAGLMALRERRMKVTNEDFKKSKESVLY 305
EA L+A R + ++T D +++ + V+
Sbjct: 363 LNEAALLAARRNKKEITMRDIEEAIDRVIA 392
>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated.
Length = 638
Score = 144 bits (364), Expect = 1e-38
Identities = 84/256 (32%), Positives = 133/256 (51%), Gaps = 34/256 (13%)
Query: 71 QTSATFLR------VVGSELIQKYL-----GDGPKL---AVANQTSATFLRVVGSELIQK 116
+ +FL+ VG+++ + L G G L A+A + F + GSE ++
Sbjct: 196 EEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255
Query: 117 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDG 176
++G G VR+LF+ A+E++P IVFIDEIDAVG +R GG E ++T+ +LL ++DG
Sbjct: 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDG 315
Query: 177 FDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK 236
F V VI ATNR++ LD AL+RPGR DR+I LPD +
Sbjct: 316 FKGNK-------------------GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDRE 356
Query: 237 TKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDF 296
+ I +H L+ DV+L+ + SGAD+ + EA ++ R ++ +T ++
Sbjct: 357 GRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRKKATITMKEI 416
Query: 297 KKSKESVLYRKKEGTP 312
+ + V+ EGTP
Sbjct: 417 DTAIDRVI-AGLEGTP 431
>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular
activities (AAA). AAA family proteins often perform
chaperone-like functions that assist in the assembly,
operation, or disassembly of protein complexes.
Length = 131
Score = 130 bits (330), Expect = 7e-38
Identities = 62/137 (45%), Positives = 82/137 (59%), Gaps = 22/137 (16%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA + A F+ + GSEL+ KY+G+ K +RELF A++ AP ++FIDEIDA+ R
Sbjct: 17 AVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCVIFIDEIDALAGSR--- 73
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
SGG+ E +R + +LL +LDGF S + V VI ATNR + LD
Sbjct: 74 GSGGDSESRRVVNQLLTELDGFTSSLSK------------------VIVIAATNRPDKLD 115
Query: 216 PALIRPGRIDRKIEFPL 232
PAL+R GR DR IEFPL
Sbjct: 116 PALLR-GRFDRIIEFPL 131
>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed.
Length = 644
Score = 133 bits (335), Expect = 7e-35
Identities = 71/209 (33%), Positives = 116/209 (55%), Gaps = 19/209 (9%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
A+A + F + GS+ ++ ++G G VR++F A++ AP I+FIDEIDAVG +R
Sbjct: 204 AIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAG 263
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
GG E ++T+ ++L ++DGF+ + VI ATNR + LD
Sbjct: 264 LGGGHDEREQTLNQMLVEMDGFEGN-------------------EGIIVIAATNRPDVLD 304
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PAL+RPGR DR++ LPD + + +I +H R+ LA D++ + SGAD+ +
Sbjct: 305 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANL 364
Query: 276 CTEAGLMALRERRMKVTNEDFKKSKESVL 304
EA L A R + V+ +F+K+K+ ++
Sbjct: 365 VNEAALFAARGNKRVVSMVEFEKAKDKIM 393
>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 368
Score = 115 bits (289), Expect = 1e-29
Identities = 76/224 (33%), Positives = 109/224 (48%), Gaps = 27/224 (12%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVG-TKRYD 154
A+AN+ L V +ELI +++GDG + + EL+ A + AP IVFIDE+DA+ +RY
Sbjct: 170 ALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQ 229
Query: 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETL 214
G EI LL +LDG V I ATNR E L
Sbjct: 230 ELRGDVSEIVNA---LLTELDGIKEN-------------------EGVVTIAATNRPELL 267
Query: 215 DPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKA 274
DPA IR R + +IEF LP+++ + I + + L D +L+ L +SG DIK
Sbjct: 268 DPA-IR-SRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKE 325
Query: 275 ICTEAGLM-ALRERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL 317
+ L A+ E R KV ED +K+ + R+ P+ LY+
Sbjct: 326 KVLKTALHRAIAEDREKVEREDIEKALKKERKRRAP-RPKHLYV 368
>gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase. In the Actinobacteria, as
shown for Mycobacterium tuberculosis, some proteins are
modified by ligation between an epsilon-amino group of a
lysine side chain and the C-terminal carboxylate of the
ubiquitin-like protein Pup. This modification leads to
protein degradation by the archaeal-like proteasome
found in the Actinobacteria. Members of this protein
family belong to the AAA family of ATPases and tend to
be clustered with the genes for Pup, the Pup ligase
PafA, and structural components of the proteasome. This
protein forms hexameric rings with ATPase activity
[Protein fate, Degradation of proteins, peptides, and
glycopeptides].
Length = 512
Score = 82.1 bits (203), Expect = 3e-17
Identities = 57/179 (31%), Positives = 91/179 (50%), Gaps = 32/179 (17%)
Query: 102 SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHA----PSIVFIDEIDAVGTKRYDSNS 157
+ FL + G EL+ KY+G+ + +R +F+ A E A P IVF DE+D++ R S
Sbjct: 251 KSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASEGRPVIVFFDEMDSLFRTR---GS 307
Query: 158 GGEREIQRTML-ELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDP 216
G +++ T++ +LL ++DG +S +V VI A+NR + +DP
Sbjct: 308 GVSSDVETTVVPQLLAEIDGVESL-------------------DNVIVIGASNREDMIDP 348
Query: 217 ALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
A++RPGR+D KI PD + IF + L +D+ L E + A D A A+
Sbjct: 349 AILRPGRLDVKIRIERPDAEAAADIFAKY-----LTDDLPLPEDLAAHDGDREATAAAL 402
Score = 30.1 bits (68), Expect = 1.9
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 5 TLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKV 50
TL+E++DD A+V+ G E V + + + L PG ++L++ +
Sbjct: 111 TLKEVLDDGRALVTDRSGEERVVKLAGALADEGLRPGDTLLVDPRA 156
>gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional.
Length = 489
Score = 67.7 bits (166), Expect = 1e-12
Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 26/206 (12%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
A+AN LR+ +L +G+ +R++ R+AE +P I++IDEID + +S
Sbjct: 278 AIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFS---NS 334
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
S G DS NR L+ + L+ P V V+ N I+ L
Sbjct: 335 ESKG------------------DSGTTNRVLATFITWLSEKKSP--VFVVATANNIDLLP 374
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTS--RMTLAEDVNLQELIMAKDDLSGADIK 273
++R GR D LP + + +IF IH R + ++++L + SGA+I+
Sbjct: 375 LEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIE 434
Query: 274 AICTEAGLMALRERRMKVTNEDFKKS 299
EA +A E+R + T +D +
Sbjct: 435 QSIIEAMYIAFYEKR-EFTTDDILLA 459
>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of
cellular Activities) superfamily represents an ancient
group of ATPases belonging to the ASCE (for additional
strand, catalytic E) division of the P-loop NTPase fold.
The ASCE division also includes ABC, RecA-like,
VirD4-like, PilT-like, and SF1/2 helicases. Members of
the AAA+ ATPases function as molecular chaperons, ATPase
subunits of proteases, helicases, or nucleic-acid
stimulated ATPases. The AAA+ proteins contain several
distinct features in addition to the conserved
alpha-beta-alpha core domain structure and the Walker A
and B motifs of the P-loop NTPases.
Length = 151
Score = 61.0 bits (148), Expect = 2e-11
Identities = 42/143 (29%), Positives = 61/143 (42%), Gaps = 35/143 (24%)
Query: 96 AVANQT---SATFLRVVGSELIQKYLG---DGPKLVRELFRVAEEHAPSIVFIDEIDAVG 149
A+AN+ A FL + S+L++ + G LVR LF +AE+ P ++FIDEID++
Sbjct: 38 AIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLS 97
Query: 150 TKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATN 209
R Q +L +L L L +V+VI ATN
Sbjct: 98 -----------RGAQNALLRVLETL------------------NDLRIDRENVRVIGATN 128
Query: 210 RIETLDPALIRPGRIDRKIEFPL 232
R D R+D +I PL
Sbjct: 129 RPLLGDLDRALYDRLDIRIVIPL 151
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 46.6 bits (110), Expect = 2e-06
Identities = 29/156 (18%), Positives = 52/156 (33%), Gaps = 32/156 (20%)
Query: 83 ELIQKYLGDGPKLAVAN----QTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPS 138
L ++ G + + ++ +K G G +R +A + P
Sbjct: 21 ALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPD 80
Query: 139 IVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYL 198
++ +DEI ++ + L E L L+
Sbjct: 81 VLILDEITSLLDAEQE---------------------------ALLLLLEELRLLLLLKS 113
Query: 199 PGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPD 234
++ VI+ TN + L PAL+R R DR+I L
Sbjct: 114 EKNLTVILTTNDEKDLGPALLRR-RFDRRIVLLLIL 148
>gnl|CDD|224141 COG1220, HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 444
Score = 35.3 bits (82), Expect = 0.031
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 118 LGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGERE-IQRTMLELL 171
L D ++ +E AE++ IVFIDEID + + RE +QR +L L+
Sbjct: 234 LIDQEEIKQEAIDAAEQNG--IVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLV 286
>gnl|CDD|235364 PRK05201, hslU, ATP-dependent protease ATP-binding subunit HslU;
Provisional.
Length = 443
Score = 35.1 bits (82), Expect = 0.049
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 7/49 (14%)
Query: 123 KLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGE--RE-IQRTML 168
++ +E E++ IVFIDEID + + +SG + RE +QR +L
Sbjct: 238 EIKQEAIERVEQNG--IVFIDEIDKIAAR--GGSSGPDVSREGVQRDLL 282
>gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction
only].
Length = 329
Score = 34.3 bits (79), Expect = 0.075
Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 30/134 (22%)
Query: 139 IVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYL 198
I+ +DEI+ E+Q +LE L + +V L+ I L
Sbjct: 115 ILLLDEINRAP-----------PEVQNALLEALE-----ERQVTVPGLTT-------IRL 151
Query: 199 PGDVKVIMATNRIE-----TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAE 253
P VI N E L AL+ R +I PD + + RI + +
Sbjct: 152 PPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARVGGVDELD 209
Query: 254 DVNLQELIMAKDDL 267
+L + +++ ++L
Sbjct: 210 LESLVKPVLSDEEL 223
>gnl|CDD|213250 cd03283, ABC_MutS-like, ATP-binding cassette domain of MutS-like
homolog. The MutS protein initiates DNA mismatch repair
by recognizing mispaired and unpaired bases embedded in
duplex DNA and activating endo- and exonucleases to
remove the mismatch. Members of the MutS family possess
C-terminal domain with a conserved ATPase activity that
belongs to the ATP binding cassette (ABC) superfamily.
MutS homologs (MSH) have been identified in most
prokaryotic and all eukaryotic organisms examined.
Prokaryotes have two homologs (MutS1 and MutS2), whereas
seven MSH proteins (MSH1 to MSH7) have been identified
in eukaryotes. The homodimer MutS1 and heterodimers
MSH2-MSH3 and MSH2-MSH6 are primarily involved in
mitotic mismatch repair, whereas MSH4-MSH5 is involved
in resolution of Holliday junctions during meiosis. All
members of the MutS family contain the highly conserved
Walker A/B ATPase domain, and many share a common
mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and
MSH4-MSH5 dimerize to form sliding clamps, and
recognition of specific DNA structures or lesions
results in ADP/ATP exchange.
Length = 199
Score = 31.9 bits (73), Expect = 0.32
Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 22/141 (15%)
Query: 75 TFLRVVGSELIQKYLGDGPKLAVANQTSATFLRVVGSELIQKYLGDGP-------KLVRE 127
TFLR +G +I G P A + +++ S + L DG + ++E
Sbjct: 40 TFLRTIGVNVILAQAG-APVCA--SSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKE 96
Query: 128 LFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQR-----------TMLELLNQLDG 176
+ A++ P + +DEI GT + + ++ T L L
Sbjct: 97 IVEKAKKGEPVLFLLDEI-FKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLLD 155
Query: 177 FDSRVQNRRLSEVYSSLTLIY 197
DS V+N E LI+
Sbjct: 156 LDSAVRNYHFREDIDDNKLIF 176
>gnl|CDD|224391 COG1474, CDC6, Cdc6-related protein, AAA superfamily ATPase [DNA
replication, recombination, and repair /
Posttranslational modification, protein turnover,
chaperones].
Length = 366
Score = 30.8 bits (70), Expect = 0.88
Identities = 34/182 (18%), Positives = 65/182 (35%), Gaps = 41/182 (22%)
Query: 130 RVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEV 189
++++ IV +DE+DA+ K + + LL +V
Sbjct: 117 NLSKKGKTVIVILDEVDALVDKDGE-----------VLYSLLRAPGENKVKV-------- 157
Query: 190 YSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM 249
+ V ++ LDP ++ +I FP T +++I R+
Sbjct: 158 ----------SIIAVSNDDKFLDYLDPR-VKSSLGPSEIVFP---PYTAEELYDILRERV 203
Query: 250 TLAE-----DVNLQELIMAKDDLSGADI---KAICTEAGLMALRERRMKVTNEDFKKSKE 301
D ++ +LI A D I AG +A RE KV+ + ++++E
Sbjct: 204 EEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQE 263
Query: 302 SV 303
+
Sbjct: 264 EI 265
>gnl|CDD|226514 COG4027, COG4027, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 194
Score = 30.2 bits (68), Expect = 1.1
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 8/78 (10%)
Query: 119 GDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFD 178
G P V + R A E V + +G K + S G RE+ + + +
Sbjct: 36 GRDPSEVEDNLREALEGPYWPVLL-----LGRKEKELASMGGREVW---MPSFSAVLVTK 87
Query: 179 SRVQNRRLSEVYSSLTLI 196
++V+N R+ E+Y ++ I
Sbjct: 88 AKVRNMRVDEIYDNIEDI 105
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 29.5 bits (67), Expect = 1.7
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 136 APSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTL 195
P I+ +DE T D+++ EREIQ + ++ G + V RLS + ++ +
Sbjct: 155 NPPILLLDE----ATSALDTHT--EREIQAALRDVSK---GRTTIVIAHRLSTIVNADKI 205
Query: 196 IYL 198
I L
Sbjct: 206 IVL 208
>gnl|CDD|107362 cd06367, PBP1_iGluR_NMDA, N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the ionotropic N-methyl-d-asparate (NMDA)
subtype of glutamate receptors. N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the ionotropic N-methyl-d-asparate (NMDA)
subtype of glutamate receptors. While this N-terminal
domain belongs to the periplasmic-binding fold type I
superfamily, the glutamate-binding domain of the iGluR
is structurally homologous to the periplasmic-binding
fold type II. The LIVBP-like domain of iGluRs is
thought to play a role in the initial assembly of iGluR
subunits, but it is not well understood how this domain
is arranged and functions in intact iGluR. The function
of the NMDA subtype receptor serves critical functions
in neuronal development, functioning, and degeneration
in the mammalian central nervous system. The functional
NMDA receptor is a heterotetramer comprising two NR1
and two NR2 (A, B, C, and D) or NR3 (A and B) subunits.
The receptor controls a cation channel that is highly
permeable to monovalent ions and calcium and exhibits
voltage-dependent inhibition by magnesium. Dual
agonists, glutamate and glycine, are required for
efficient activation of the NMDA receptor. Among NMDA
receptor subtypes, the NR2B subunit containing
receptors appear particularly important for pain
perception; thus NR2B-selective antagonists may be
useful in the treatment of chronic pain.
Length = 362
Score = 29.6 bits (67), Expect = 2.0
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 42 CSVLLNHKVHAVVGVLSDDTDPMVTAVANQTSATFLR--VVG 81
C +L+ V V V SD TD A ++ R VVG
Sbjct: 56 CDLLVVQVVAGV--VFSDPTDEEAVAQILDFTSAQTRIPVVG 95
>gnl|CDD|236239 PRK08322, PRK08322, acetolactate synthase; Reviewed.
Length = 547
Score = 29.8 bits (68), Expect = 2.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 122 PKLVRELFRVAEEHAPSIVFID 143
P++VRE FR+AEE P V ++
Sbjct: 135 PEVVREAFRLAEEERPGAVHLE 156
>gnl|CDD|226625 COG4145, PanF, Na+/panthothenate symporter [Coenzyme metabolism].
Length = 473
Score = 29.7 bits (67), Expect = 2.6
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 193 LTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFP 231
+ +IY G + + T + T+DP L+ P D ++ P
Sbjct: 199 VGVIYAGGGLSNAVET--LTTIDPGLVTPQGADDILDPP 235
>gnl|CDD|222777 PHA00144, PHA00144, major head protein.
Length = 438
Score = 29.1 bits (65), Expect = 3.5
Identities = 22/115 (19%), Positives = 43/115 (37%), Gaps = 14/115 (12%)
Query: 14 HAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVANQTS 73
++S S + + ++FV D V+++ ++ ++ S + A N+
Sbjct: 325 WQVLSAS----RFANAVAFVTGDNTIVVTQVIVSPEIASLKQGKSQGFTAYIRAPDNKGH 380
Query: 74 ATFLRVVGSELIQKYLGDGPKLAVANQTSATFLRV---VGSELIQKYLGDGPKLV 125
A V G DG AN+ + ++V +G+ DG K V
Sbjct: 381 AVVWYVEGGSTGTSISNDGVLTIGANEPNQLTVKVTVDIGTA-------DGNKPV 428
>gnl|CDD|218302 pfam04873, EIN3, Ethylene insensitive 3. Ethylene insensitive 3
(EIN3) proteins are a family of plant DNA-binding
proteins that regulate transcription in response to the
gaseous plant hormone ethylene, and are essential for
ethylene-mediated responses including the triple
response, cell growth inhibition, and accelerated
senescence.
Length = 332
Score = 28.8 bits (65), Expect = 3.7
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 62 DPMVTAVANQTSATFLRVVGSELIQKYLGDGPKLAVANQTSATFLRVVGSE 112
DP+ A N T + + SEL +YL + K V+ + S G+E
Sbjct: 184 DPL-RAEINHMQETSIEMEESELDTQYLQNTFK--VSKRQSFALFSNPGNE 231
>gnl|CDD|236828 PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit;
Provisional.
Length = 758
Score = 28.3 bits (63), Expect = 6.0
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 116 KYLGDGPKLVRELFRVAEEHAPSIVFIDEI 145
KY GD K + L + E+ SI+FIDEI
Sbjct: 258 KYRGDFEKRFKALLKQLEQDTNSILFIDEI 287
>gnl|CDD|165252 PHA02942, PHA02942, putative transposase; Provisional.
Length = 383
Score = 28.1 bits (62), Expect = 6.6
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
Query: 219 IRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 266
I+ G+ K+ F +EK K + ++A D+N+ ++++ KDD
Sbjct: 156 IKDGKAFLKVTFEKEEEKIK--------PKDSVAVDINMNDIVVGKDD 195
>gnl|CDD|213527 TIGR00390, hslU, ATP-dependent protease HslVU, ATPase subunit.
This model represents the ATPase subunit of HslVU, while
the proteasome-related peptidase subunit is HslV.
Residues 54-61 of the model contain a P-loop ATP-binding
motif. Cys-287 of E. coli (position 308 in the seed
alignment), studied in MEDLINE:98389714, is Ser in other
members of the seed alignment [Protein fate, Protein
folding and stabilization].
Length = 441
Score = 28.2 bits (63), Expect = 6.7
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 132 AEEHAPSIVFIDEIDAVGTKRYDSNSGGERE-IQRTMLELL 171
E+ I+FIDEID + K S + RE +QR +L ++
Sbjct: 245 VEQSG--IIFIDEIDKIAKKGESSGADVSREGVQRDLLPIV 283
>gnl|CDD|225115 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal
transduction mechanisms].
Length = 890
Score = 28.4 bits (64), Expect = 6.9
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 8/60 (13%)
Query: 119 GDGPKLVRELFRVAE-EHAP-SIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDG 176
KL+R R+A HA + V+++ T S E L L +L
Sbjct: 259 PGSEKLIRRAARLASRLHAKWTAVYVE------TPELHRLSEKEARRLHENLRLAEELGA 312
>gnl|CDD|225455 COG2902, COG2902, NAD-specific glutamate dehydrogenase [Amino acid
transport and metabolism].
Length = 1592
Score = 28.1 bits (63), Expect = 8.2
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 10/56 (17%)
Query: 105 FLRVVGSELIQKYLGDGPKL-VRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGG 159
+RV G E+ K +G+G L V + R+ A + D ID NS G
Sbjct: 1105 AIRVNGEEVRAKVIGEGANLGVTQRGRIEFALAGGRINTDAID---------NSAG 1151
>gnl|CDD|198292 cd03183, GST_C_Theta, C-terminal, alpha helical domain of Class
Theta Glutathione S-transferases. Glutathione
S-transferase (GST) C-terminal domain family, Class
Theta subfamily; composed of eukaryotic class Theta GSTs
and bacterial dichloromethane (DCM) dehalogenase. GSTs
are cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. The GST fold contains an N-terminal
thioredoxin-fold domain and a C-terminal alpha helical
domain, with an active site located in a cleft between
the two domains. GSH binds to the N-terminal domain
while the hydrophobic substrate occupies a pocket in the
C-terminal domain. Mammalian class Theta GSTs show poor
GSH conjugating activity towards the standard
substrates, CDNB and ethacrynic acid, differentiating
them from other mammalian GSTs. GSTT1-1 shows similar
cataytic activity as bacterial DCM dehalogenase,
catalyzing the GSH-dependent hydrolytic dehalogenation
of dihalomethanes. This is an essential process in
methylotrophic bacteria to enable them to use
chloromethane and DCM as sole carbon and energy sources.
The presence of polymorphisms in human GSTT1-1 and its
relationship to the onset of diseases including cancer
is the subject of many studies. Human GSTT2-2 exhibits a
highly specific sulfatase activity, catalyzing the
cleavage of sulfate ions from aralkyl sufate esters, but
not from the aryl or alkyl sulfate esters.
Length = 126
Score = 26.8 bits (60), Expect = 9.2
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 17/91 (18%)
Query: 231 PLPDEKTKRRIFNIHTSRMTLAEDVNLQE-LIMAKDDLSGADIKAIC----TEAG----- 280
P+ EK K+ N+ S + L E+ L++ +A D++S AD+ AIC EA
Sbjct: 37 PVSPEKVKKAEENLEES-LDLLENKFLKDKPFLAGDEISIADLSAICEIMQPEAAGYDVF 95
Query: 281 -----LMALRERRMKVTNEDFKKSKESVLYR 306
L A R+R + N F ++ + V+Y+
Sbjct: 96 EGRPKLAAWRKRVKEAGNPLFDEAHK-VIYK 125
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.135 0.370
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,285,727
Number of extensions: 1608926
Number of successful extensions: 1574
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1544
Number of HSP's successfully gapped: 66
Length of query: 317
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 220
Effective length of database: 6,635,264
Effective search space: 1459758080
Effective search space used: 1459758080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.4 bits)