RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7780
(317 letters)
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 361 bits (929), Expect = e-126
Identities = 113/222 (50%), Positives = 159/222 (71%), Gaps = 19/222 (8%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA +T+ATF+RVVGSEL++K++G+G LV+++F++A+E APSI+FIDEIDA+ KR D+
Sbjct: 70 AVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDA 129
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
+GG+RE+QRT+++LL ++DGFD+R GDVK+I ATNR + LD
Sbjct: 130 LTGGDREVQRTLMQLLAEMDGFDAR-------------------GDVKIIGATNRPDILD 170
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PA++RPGR DR IE P PDEK + I IHT +M LAEDVNL+E+ + GA++KAI
Sbjct: 171 PAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAI 230
Query: 276 CTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL 317
CTEAG+ A+RE R VT +DF+K+ E ++ +KK E +L
Sbjct: 231 CTEAGMNAIRELRDYVTMDDFRKAVEKIMEKKKVKVKEPAHL 272
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 215 bits (550), Expect = 1e-66
Identities = 75/225 (33%), Positives = 116/225 (51%), Gaps = 39/225 (17%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVAN+T A F + G E++ K G+ +R+ F AE++AP+I+FIDE+DA+ KR +
Sbjct: 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 316
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
+ ER R + +LL +DG R V V+ ATNR ++D
Sbjct: 317 HGEVER---RIVSQLLTLMDGLKQR-------------------AHVIVMAATNRPNSID 354
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PAL R GR DR+++ +PD + I IHT M LA+DV+L+++ GAD+ A+
Sbjct: 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAAL 414
Query: 276 CTEAGLMALRERR-----------------MKVTNEDFKKSKESV 303
C+EA L A+R++ + VT +DF+ +
Sbjct: 415 CSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQS 459
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 195 bits (499), Expect = 4e-61
Identities = 65/218 (29%), Positives = 111/218 (50%), Gaps = 19/218 (8%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
A+AN+ A F+ + G EL+ + G+ VRE+F A + AP ++F DE+D++ R +
Sbjct: 68 AIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN 127
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
G R + ++L ++DG ++ +V +I ATNR + +D
Sbjct: 128 IGDGGGAADRVINQILTEMDGMSTK-------------------KNVFIIGATNRPDIID 168
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PA++RPGR+D+ I PLPDEK++ I + + +A+DV+L+ L + SGAD+ I
Sbjct: 169 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEI 228
Query: 276 CTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPE 313
C A +A+RE + ++ +E P
Sbjct: 229 CQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPV 266
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 191 bits (488), Expect = 1e-59
Identities = 42/229 (18%), Positives = 87/229 (37%), Gaps = 34/229 (14%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEE----HAPSIVFIDEIDAVGTK 151
V + + + EL G+ KL+R+ +R A E +FI+++DA +
Sbjct: 55 LVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGR 114
Query: 152 RYDSNSGG--EREIQRTMLELLN-----QLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKV 204
+ + + T++ + + QL G ++ +N R V +
Sbjct: 115 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENAR----------------VPI 158
Query: 205 IMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAK 264
I+ N TL LIR GR+++ P +++ + + ++V ++++
Sbjct: 159 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIG------VCTGIFRTDNVPAEDVVKIV 212
Query: 265 DDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPE 313
D+ G I + E R V+ +K + +L +G P
Sbjct: 213 DNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLL-NSFDGPPT 260
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 186 bits (474), Expect = 9e-58
Identities = 67/224 (29%), Positives = 118/224 (52%), Gaps = 38/224 (16%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVAN++ F+ V G EL+ Y+G+ + VR++F+ A+ AP ++F DE+DA+ +R D
Sbjct: 63 AVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR 122
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
+G R + +LL ++DG ++R V ++ ATNR + +D
Sbjct: 123 ETGAS---VRVVNQLLTEMDGLEAR-------------------QQVFIMAATNRPDIID 160
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHT---SRMTLAEDVNLQEL--IMAKDDLSGA 270
PA++RPGR+D+ + LP + I T ++ L DVNL+ + + D +GA
Sbjct: 161 PAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGA 220
Query: 271 DIKAICTEAGLMALRER-----------RMKVTNEDFKKSKESV 303
D+ A+ EA + ALR+ +KV+++ F+++ + V
Sbjct: 221 DLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKV 264
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 197 bits (502), Expect = 2e-57
Identities = 65/218 (29%), Positives = 111/218 (50%), Gaps = 19/218 (8%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
A+AN+ A F+ + G EL+ + G+ VRE+F A + AP ++F DE+D++ R +
Sbjct: 530 AIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN 589
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
G R + ++L ++DG ++ +V +I ATNR + +D
Sbjct: 590 IGDGGGAADRVINQILTEMDGMSTK-------------------KNVFIIGATNRPDIID 630
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PA++RPGR+D+ I PLPDEK++ I + + +A+DV+L+ L + SGAD+ I
Sbjct: 631 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEI 690
Query: 276 CTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPE 313
C A +A+RE + ++ +E P
Sbjct: 691 CQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPV 728
Score = 153 bits (387), Expect = 9e-42
Identities = 75/225 (33%), Positives = 115/225 (51%), Gaps = 39/225 (17%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVAN+T A F + G E++ K G+ +R+ F AE++AP+I+FIDE+DA+ KR +
Sbjct: 257 AVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT 316
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
+ ER I +L L+ DG R V V+ ATNR ++D
Sbjct: 317 HGEVERRIVSQLLTLM---DGLKQR-------------------AHVIVMAATNRPNSID 354
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PAL R GR DR+++ +PD + I IHT M LA+DV+L+++ GAD+ A+
Sbjct: 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAAL 414
Query: 276 CTEAGLMALRERR-----------------MKVTNEDFKKSKESV 303
C+EA L A+R++ + VT +DF+ +
Sbjct: 415 CSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQS 459
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 168 bits (429), Expect = 4e-51
Identities = 78/214 (36%), Positives = 107/214 (50%), Gaps = 26/214 (12%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA + FL + G+E ++ G G VR LF+ A AP IV+IDEIDAVG KR +
Sbjct: 58 AVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTT 117
Query: 156 NSGG---EREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE 212
SG E E +T+ +LL ++DG + V V+ +TNR +
Sbjct: 118 MSGFSNTEEE--QTLNQLLVEMDGMGTTDH-------------------VIVLASTNRAD 156
Query: 213 TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD--LSGA 270
LD AL+RPGR+DR + LP + +R IF H + L + +A+ SGA
Sbjct: 157 ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGA 216
Query: 271 DIKAICTEAGLMALRERRMKVTNEDFKKSKESVL 304
DI IC EA L A RE V +F+ + E VL
Sbjct: 217 DIANICNEAALHAAREGHTSVHTLNFEYAVERVL 250
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 169 bits (430), Expect = 1e-50
Identities = 61/209 (29%), Positives = 101/209 (48%), Gaps = 24/209 (11%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA + ++TF V S+L+ K++G+ KLV++LF +A E+ PSI+FID++DA+ R +
Sbjct: 70 AVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG 129
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
S R R ELL Q++G + Q V V+ ATN LD
Sbjct: 130 ESEASR---RIKTELLVQMNGVGNDSQG------------------VLVLGATNIPWQLD 168
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM-TLAEDVNLQELIMAKDDLSGADIKA 274
A+ R R +R+I PLPD + +F I+ + + + L + SG+DI
Sbjct: 169 SAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAV 226
Query: 275 ICTEAGLMALRERRMKVTNEDFKKSKESV 303
+ +A + +R+ + +D +
Sbjct: 227 VVKDALMQPIRKIQSATHFKDVSTEDDET 255
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding,
hydrolase; 2.70A {Drosophila melanogaster}
Length = 297
Score = 168 bits (427), Expect = 2e-50
Identities = 70/221 (31%), Positives = 105/221 (47%), Gaps = 34/221 (15%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA + SATFL + + L KY+GDG KLVR LF VA PSI+FIDE+D++ ++R S
Sbjct: 73 AVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS 132
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
R R E L + DG R + V+ ATNR + LD
Sbjct: 133 EHEASR---RLKTEFLVEFDGLPGNPDGDR----------------IVVLAATNRPQELD 173
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIKA 274
A +R R +++ LPDE+T+ + N + + L+ L D SG+D+ A
Sbjct: 174 EAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTA 231
Query: 275 ICTEAGLMALRERRMK------------VTNEDFKKSKESV 303
+ +A L +RE ++ +T +DF S + +
Sbjct: 232 LAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRI 272
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 168 bits (428), Expect = 6e-50
Identities = 63/222 (28%), Positives = 109/222 (49%), Gaps = 37/222 (16%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
+A+Q+ ATF + S L K++G+G K+VR LF VA P+++FIDEID++ ++R
Sbjct: 136 CIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQR--- 192
Query: 156 NSGGEREIQRTML-ELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETL 214
GE E R + E L QLDG + ++R + V+ ATNR + +
Sbjct: 193 -GDGEHESSRRIKTEFLVQLDGATTSSEDR-----------------ILVVGATNRPQEI 234
Query: 215 DPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSR-MTLAEDVNLQELIMAKDDLSGADIK 273
D A R R+ +++ PLP+ +++I S+ + +++++ D SGAD+
Sbjct: 235 DEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMT 292
Query: 274 AICTEAGLMALRERRMK------------VTNEDFKKSKESV 303
+C EA L +R + + DF+ + +V
Sbjct: 293 QLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTV 334
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 166 bits (422), Expect = 4e-49
Identities = 61/209 (29%), Positives = 102/209 (48%), Gaps = 24/209 (11%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA + ++TF V S+L+ K++G+ KLV++LF +A E+ PSI+FID++DA+ R +
Sbjct: 103 AVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG 162
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
S R R ELL Q++G + Q V V+ ATN LD
Sbjct: 163 ESEASR---RIKTELLVQMNGVGNDSQG------------------VLVLGATNIPWQLD 201
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM-TLAEDVNLQELIMAKDDLSGADIKA 274
A+ R R +R+I PLPD + +F I+ ++ + + L + SG+DI
Sbjct: 202 SAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAV 259
Query: 275 ICTEAGLMALRERRMKVTNEDFKKSKESV 303
+ +A + +R+ + +D +
Sbjct: 260 VVKDALMQPIRKIQSATHFKDVSTEDDET 288
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 164 bits (418), Expect = 8e-49
Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 25/209 (11%)
Query: 96 AVANQT-SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYD 154
AVA + ++TF + S+L+ K+LG+ KLV+ LF++A E+ PSI+FIDEID++ R +
Sbjct: 64 AVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE 123
Query: 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETL 214
+ S R R E L Q+ G + V+ ATN L
Sbjct: 124 NESEAAR---RIKTEFLVQMQGVGVDNDG------------------ILVLGATNIPWVL 162
Query: 215 DPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIK 273
D A+ R R +++I PLP+ + +F +H + + + +EL D SGADI
Sbjct: 163 DSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADIS 220
Query: 274 AICTEAGLMALRERRMKVTNEDFKKSKES 302
I +A + +R+ + + + +
Sbjct: 221 IIVRDALMQPVRKVQSATHFKKVRGPSRA 249
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 166 bits (421), Expect = 1e-48
Identities = 65/221 (29%), Positives = 106/221 (47%), Gaps = 35/221 (15%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA +++ATF + + L KY+G+G KLVR LF VA E PSI+FID++D++ +R +
Sbjct: 167 AVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG 226
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
R R E L + DG S +R V V+ ATNR + LD
Sbjct: 227 EHDASR---RLKTEFLIEFDGVQSAGDDR-----------------VLVMGATNRPQELD 266
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRM-TLAEDVNLQELIMAKDDLSGADIKA 274
A++R R +++ LP+E+T+ + + + L +L D SG+D+ A
Sbjct: 267 EAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTA 324
Query: 275 ICTEAGLMALRERRMK------------VTNEDFKKSKESV 303
+ +A L +RE + + + DF +S + +
Sbjct: 325 LAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKI 365
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 162 bits (412), Expect = 1e-48
Identities = 80/212 (37%), Positives = 112/212 (52%), Gaps = 23/212 (10%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA + F + GS I+ ++G G VR+LF A++ APSI+FIDEIDA+G R
Sbjct: 63 AVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAG 122
Query: 156 NSGG---EREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE 212
ERE +T+ +LL ++DGF S V V+ ATNR E
Sbjct: 123 GVVSGNDERE--QTLNQLLAEMDGFGSENAP------------------VIVLAATNRPE 162
Query: 213 TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADI 272
LDPAL+RPGR DR++ PD + I +H + LA DVNLQE+ L+GAD+
Sbjct: 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADL 222
Query: 273 KAICTEAGLMALRERRMKVTNEDFKKSKESVL 304
I EA L+A R + +V + K++ E +
Sbjct: 223 ANIINEAALLAGRNNQKEVRQQHLKEAVERGI 254
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 158 bits (402), Expect = 3e-47
Identities = 71/209 (33%), Positives = 116/209 (55%), Gaps = 19/209 (9%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
A+A + F + GS+ ++ ++G G VR++F A++ AP I+FIDEIDAVG +R
Sbjct: 64 AIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAG 123
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
GG E ++T+ ++L ++DGF+ + VI ATNR + LD
Sbjct: 124 LGGGHDEREQTLNQMLVEMDGFEGN-------------------EGIIVIAATNRPDVLD 164
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PAL+RPGR DR++ LPD + + +I +H R+ LA D++ + SGAD+ +
Sbjct: 165 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANL 224
Query: 276 CTEAGLMALRERRMKVTNEDFKKSKESVL 304
EA L A R + V+ +F+K+K+ ++
Sbjct: 225 VNEAALFAARGNKRVVSMVEFEKAKDKIM 253
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 155 bits (393), Expect = 1e-45
Identities = 81/204 (39%), Positives = 114/204 (55%), Gaps = 19/204 (9%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA + F+ GS+ ++ ++G G VR+LF A+ HAP IVFIDEIDAVG KR
Sbjct: 92 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 151
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
GG E ++T+ +LL ++DGF+ + V+ ATNR + LD
Sbjct: 152 VGGGNDEREQTLNQLLVEMDGFEKD-------------------TAIVVMAATNRPDILD 192
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PAL+RPGR DR+I PD K + +I IH LAEDV+L L GAD++ +
Sbjct: 193 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENL 252
Query: 276 CTEAGLMALRERRMKVTNEDFKKS 299
EA L+A RE R K+T +D +++
Sbjct: 253 LNEAALLAAREGRRKITMKDLEEA 276
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 154 bits (390), Expect = 2e-45
Identities = 81/204 (39%), Positives = 114/204 (55%), Gaps = 19/204 (9%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA + F+ GS+ ++ ++G G VR+LF A+ HAP IVFIDEIDAVG KR
Sbjct: 68 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 127
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
GG E ++T+ +LL ++DGF+ + V+ ATNR + LD
Sbjct: 128 VGGGNDEREQTLNQLLVEMDGFEKD-------------------TAIVVMAATNRPDILD 168
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PAL+RPGR DR+I PD K + +I IH LAEDV+L L GAD++ +
Sbjct: 169 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENL 228
Query: 276 CTEAGLMALRERRMKVTNEDFKKS 299
EA L+A RE R K+T +D +++
Sbjct: 229 LNEAALLAAREGRRKITMKDLEEA 252
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 158 bits (401), Expect = 3e-45
Identities = 61/209 (29%), Positives = 100/209 (47%), Gaps = 25/209 (11%)
Query: 96 AVANQT-SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYD 154
AVA + ++TF + S+L+ K+LG+ KLV+ LF++A E+ PSI+FIDEID++ R +
Sbjct: 186 AVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE 245
Query: 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETL 214
+ S R R E L Q+ G + V+ ATN L
Sbjct: 246 NESEAAR---RIKTEFLVQMQGVGVDNDG------------------ILVLGATNIPWVL 284
Query: 215 DPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA-EDVNLQELIMAKDDLSGADIK 273
D A+ R R +++I PLP+ + +F +H + + + QEL D SGADI
Sbjct: 285 DSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADIS 342
Query: 274 AICTEAGLMALRERRMKVTNEDFKKSKES 302
I +A + +R+ + + + +
Sbjct: 343 IIVRDALMQPVRKVQSATHFKKVRGPSRA 371
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 148 bits (376), Expect = 3e-41
Identities = 87/215 (40%), Positives = 120/215 (55%), Gaps = 31/215 (14%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA + + F + GS+ ++ ++G G VR+LF A+ HAP IVFIDEIDAVG R
Sbjct: 68 AVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG 127
Query: 156 NSGG--EREIQRTMLELLNQL----DGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATN 209
GG ERE + LNQL DGFDS+ + V+ ATN
Sbjct: 128 LGGGHDERE------QTLNQLLVEMDGFDSK-------------------EGIIVMAATN 162
Query: 210 RIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSG 269
R + LDPAL+RPGR D+KI PD +++I IHT LAEDVNL+ + G
Sbjct: 163 RPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVG 222
Query: 270 ADIKAICTEAGLMALRERRMKVTNEDFKKSKESVL 304
AD++ + EA L+A RE R K+T +DF+++ + V+
Sbjct: 223 ADLENLVNEAALLAAREGRDKITMKDFEEAIDRVI 257
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 148 bits (376), Expect = 3e-41
Identities = 85/215 (39%), Positives = 115/215 (53%), Gaps = 31/215 (14%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA + F+ GS+ ++ ++G G VR+LF A+ HAP IVFIDEIDAVG KR
Sbjct: 83 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 142
Query: 156 NSGG--EREIQRTMLELLNQL----DGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATN 209
GG ERE + LNQL DGF+ + V+ ATN
Sbjct: 143 VGGGNDERE------QTLNQLLVEMDGFEKD-------------------TAIVVMAATN 177
Query: 210 RIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSG 269
R + LDPAL+RPGR DR+I PD K + +I IH LAEDV+L L G
Sbjct: 178 RPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVG 237
Query: 270 ADIKAICTEAGLMALRERRMKVTNEDFKKSKESVL 304
AD++ + EA L+A RE R K+T +D +++ + V+
Sbjct: 238 ADLENLLNEAALLAAREGRRKITMKDLEEAADRVM 272
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast
structural genomics consortium (NESG), target HR3102A,
PSI-2; NMR {Homo sapiens}
Length = 86
Score = 131 bits (331), Expect = 1e-38
Identities = 30/80 (37%), Positives = 48/80 (60%)
Query: 228 IEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRER 287
P+E+ + I IH+ +M L +NL+++ SGA++K +CTEAG+ ALRER
Sbjct: 6 HHHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER 65
Query: 288 RMKVTNEDFKKSKESVLYRK 307
R+ VT EDF+ + V+ +
Sbjct: 66 RVHVTQEDFEMAVAKVMQKD 85
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.10A {Homo sapiens}
Length = 78
Score = 126 bits (319), Expect = 4e-37
Identities = 31/77 (40%), Positives = 49/77 (63%)
Query: 231 PLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMK 290
P P+E+ + I IH+ +M L +NL+++ SGA++K +CTEAG+ ALRERR+
Sbjct: 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVH 60
Query: 291 VTNEDFKKSKESVLYRK 307
VT EDF+ + V+ +
Sbjct: 61 VTQEDFEMAVAKVMQKD 77
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} PDB: 2dzo_B
Length = 82
Score = 118 bits (298), Expect = 5e-34
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 238 KRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFK 297
+R IF S+M+LA + +L LI+ D LSGA I AI EAGL A+R+ R + D +
Sbjct: 3 RRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLE 62
Query: 298 KSKESVLYRKKEGTPEGLY 316
++ + + Y
Sbjct: 63 EAYATQVKTDNTVDKFDFY 81
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin,
S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B*
2dvw_B*
Length = 83
Score = 118 bits (298), Expect = 6e-34
Identities = 31/76 (40%), Positives = 55/76 (72%)
Query: 234 DEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTN 293
D + KR IF+ TS+M L+E+V+L++ + D +SGADI +IC E+G++A+RE R V
Sbjct: 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLA 61
Query: 294 EDFKKSKESVLYRKKE 309
+DF+K+ ++V+ + ++
Sbjct: 62 KDFEKAYKTVIKKDEQ 77
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 108 bits (272), Expect = 4e-28
Identities = 27/199 (13%), Positives = 64/199 (32%), Gaps = 30/199 (15%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDG-PKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYD 154
+A +++ F+++ + + + + ++++F A + S V +D+I+ +
Sbjct: 83 KIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYV-- 140
Query: 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETL 214
G R + LL L + + + +I T+R + L
Sbjct: 141 --PIGPRFSNLVLQALLVLLKKAPPQGRK------------------LLIIGTTSRKDVL 180
Query: 215 DPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMA---KDDLSGAD 271
+ I +P+ T ++ +D + K G
Sbjct: 181 Q-EMEMLNAFSTTIH--VPNIATGEQLLEALELLGNF-KDKERTTIAQQVKGKKVWIGIK 236
Query: 272 IKAICTEAGLMALRERRMK 290
+ E L E R++
Sbjct: 237 KLLMLIEMSLQMDPEYRVR 255
>3h43_A Proteasome-activating nucleotidase; regulatory particle,
nucleosidase, ATP-binding, cytoplasm,
nucleotide-binding, hydrolase; 2.10A
{Methanocaldococcus jannaschii}
Length = 85
Score = 85.2 bits (211), Expect = 2e-21
Identities = 20/65 (30%), Positives = 32/65 (49%)
Query: 1 MSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDD 60
+ VGT+ + + + +V +S G V++ FV+ D L PG V LN + VV VL +
Sbjct: 19 LIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPEL 78
Query: 61 TDPMV 65
Sbjct: 79 EHHHH 83
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone,
chaperone-protein binding complex; HET: DNA; 3.80A
{Saccharomyces cerevisiae} PDB: 4a3v_B*
Length = 88
Score = 77.6 bits (192), Expect = 2e-18
Identities = 25/82 (30%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 234 DEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAICTEAGLMALRERRMKVTN 293
D + + IF IH+ M++ + + + + +GA+++++CTEAG+ A+R RR T
Sbjct: 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATE 61
Query: 294 EDFKKSKESVL--YRKKEGTPE 313
+DF K+ + V+ Y+K T
Sbjct: 62 KDFLKAVDKVISGYKKFSSTSR 83
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase;
transcription hydrolase complex, nucleotide-binding;
2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Length = 109
Score = 77.6 bits (191), Expect = 4e-18
Identities = 22/67 (32%), Positives = 40/67 (59%)
Query: 1 MSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDD 60
+ VG + +I++D +V +S G + V+ ++++++L+PG V LN + A+V VL
Sbjct: 38 LLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTS 97
Query: 61 TDPMVTA 67
DPMV
Sbjct: 98 KDPMVYG 104
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel
inter domain, chaperone; 3.94A {Mycobacterium
tuberculosis} PDB: 3m9d_A
Length = 251
Score = 58.3 bits (140), Expect = 5e-10
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 1 MSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDD 60
G L DD+ V TS G + ++ +D L+ G +V LN + V +
Sbjct: 99 SGYGVLLATHDDDTVDVFTS-GRKMRLTCSPNIDAASLKKGQTVRLNEALTVVEAGTFEA 157
Query: 61 TDPMVTAV 68
+ T
Sbjct: 158 VGEISTLR 165
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.1 bits (132), Expect = 2e-08
Identities = 57/346 (16%), Positives = 103/346 (29%), Gaps = 105/346 (30%)
Query: 5 TLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPM 64
TL E+I ++IL +++ P LL + P+
Sbjct: 194 TLSELIRTTL---DAEKVFTQGLNILEWLENPSNTPDKDYLL----SIPISC------PL 240
Query: 65 VTAVANQTS--ATFLRVVG---SELIQKYLGDGPKLAVANQT--SATFLRVVGSELIQKY 117
+ + Q + +++G EL G +Q +A + S + +
Sbjct: 241 IGVI--QLAHYVVTAKLLGFTPGELRSYLKG----ATGHSQGLVTAVAIAETDSW--ESF 292
Query: 118 LGDGPKLVRELFRV---AEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQL 174
K + LF + E P+ I DS E + ML
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE------DSLENNE-GVPSPML------ 339
Query: 175 DGFDSRVQNRRLSEVYSSLTLI--YLPGDVKVIMA-----TNRI--------ETLDPAL- 218
+ N +V + +LP +V ++ N + L+ L
Sbjct: 340 -----SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR 394
Query: 219 ---IRPG----RI---DRKIEFP---LPDEKTKRRI---FNIHTSRMTLAEDVNLQELIM 262
G RI +RK++F LP + F H+ + A D+ ++L+
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRFLP-------VASPF--HSHLLVPASDLINKDLVK 445
Query: 263 AKDDLSGADIKA--ICTEAGLMALRERRMKVTNEDFKKSKESVLYR 306
+ DI+ T G D + S+ R
Sbjct: 446 NNVSFNAKDIQIPVYDTFDG-------------SDLRVLSGSISER 478
Score = 47.7 bits (113), Expect = 4e-06
Identities = 44/263 (16%), Positives = 78/263 (29%), Gaps = 76/263 (28%)
Query: 7 EEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPG-----CSVL---LNH---------K 49
E D+ +T E L +V +EP VL L
Sbjct: 46 EGFAADDEP--TTPA--ELVGKFLGYVS-SLVEPSKVGQFDQVLNLCLTEFENCYLEGND 100
Query: 50 VHAVVGVLSDDTDPMVTAVANQTSATFLRVVGSELIQKY-----LGDGPKLAVANQTSAT 104
+HA+ L + D + ELI+ Y + P ++++
Sbjct: 101 IHALAAKLLQENDTTLVKT-------------KELIKNYITARIMAKRP---FDKKSNSA 144
Query: 105 FLRVVGSELIQKYL---GDGPKLV-----RELFRVAEEHAPSIV--FIDEIDAVGTKRYD 154
R VG Q G G R+L+ + +V I ++
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY----QTYHVLVGDLIKFSAETLSELIR 200
Query: 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYL---------------- 198
+ E+ + L +L L+ + L + S LI +
Sbjct: 201 TTLDAEKVFTQG-LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT 259
Query: 199 PGDVKVIM--ATNRIETLDPALI 219
PG+++ + AT + L A+
Sbjct: 260 PGELRSYLKGATGHSQGLVTAVA 282
Score = 40.0 bits (93), Expect = 8e-04
Identities = 48/301 (15%), Positives = 90/301 (29%), Gaps = 94/301 (31%)
Query: 60 DTDPMVTAVANQTSATFLRVVG-SELIQKYLGDGPK-LAVANQTSATFLRVVGSELIQKY 117
T V N+ F G S I + + P L + F G + + Y
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFS--ILDIVINNPVNLTI------HFGGEKGKRIRENY 1688
Query: 118 LG-------DGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRT---- 166
DG ++F+ EH+ S F + + T
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTF---------------RSEKGLLSATQFTQ 1733
Query: 167 ---------MLELLNQLDGFD--------SRVQNRRLSEVYSSLT-------------LI 196
E L S L E Y++L ++
Sbjct: 1734 PALTLMEKAAFEDLKSKGLIPADATFAGHS------LGE-YAALASLADVMSIESLVEVV 1786
Query: 197 YLPGD-VKVIMATNRIETLDPAL--IRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAE 253
+ G ++V + + + + + I PGR+ E + + + L E
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS----QEALQYVVERVGKRTGWLVE 1842
Query: 254 DVNL----QELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKE 309
VN Q+ + +G D++A+ + L +K+ D + ++S+ + E
Sbjct: 1843 IVNYNVENQQYV-----AAG-DLRAL--DTVTNVLNF--IKLQKIDIIELQKSLSLEEVE 1892
Query: 310 G 310
G
Sbjct: 1893 G 1893
Score = 36.6 bits (84), Expect = 0.011
Identities = 31/210 (14%), Positives = 61/210 (29%), Gaps = 84/210 (40%)
Query: 110 GSELIQKYLGDGPKLVRELFRVAEEHAPSIV-F-IDEIDAVGTKRYDSNSGGEREIQRTM 167
G +L Y K ++++ A+ H F I +I + GGE+
Sbjct: 1632 GMDL---Y--KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK------ 1680
Query: 168 LELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRK 227
G +R+ E YS++ ET+ ++ +I
Sbjct: 1681 --------G-------KRIRENYSAMIF----------------ETIVDGKLKTEKI--- 1706
Query: 228 IEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGA---DIK----------- 273
F +E + F ++ + Q + + A D+K
Sbjct: 1707 --FKEINEHSTSYTFRSEKGLLSATQ--FTQPALTL---MEKAAFEDLKSKGLIPADATF 1759
Query: 274 ---------AICTEAGLMAL-------RER 287
A+ + A +M++ R
Sbjct: 1760 AGHSLGEYAALASLADVMSIESLVEVVFYR 1789
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 45.5 bits (107), Expect = 8e-06
Identities = 36/222 (16%), Positives = 67/222 (30%), Gaps = 52/222 (23%)
Query: 102 SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGER 161
+ V +L+ +Y+G +E+ + ++FIDE + + + G E
Sbjct: 99 KGHLVSVTRDDLVGQYIGHTAPKTKEVL---KRAMGGVLFIDEAYYLYRPDNERDYGQE- 154
Query: 162 EIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRP 221
+E+L Q+ + D+ VI+A + P
Sbjct: 155 -----AIEILLQVMENNR--------------------DDLVVILAGYADRMENFFQSNP 189
Query: 222 G---RIDRKIEFPL--PDEKTKRRIFNIHTSRMTLAEDVNLQ-----ELIMAKDDLS-GA 270
G RI IEFP +E + + + + L + +
Sbjct: 190 GFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANAR 249
Query: 271 DIKAICTEAGL-MALR-----------ERRMKVTNEDFKKSK 300
I+ A L A R + ED + S+
Sbjct: 250 SIRNALDRARLRQANRLFTASSGPLDARALSTIAEEDIRASR 291
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 2e-05
Identities = 51/337 (15%), Positives = 99/337 (29%), Gaps = 77/337 (22%)
Query: 29 ILSFV-DKDQLEP---GCSVLLNHKVHAVVGVLSDDTDPMVTAVANQTSATFLRVVGSEL 84
+L V + C +LL + V LS T ++ S T L
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD--HHSMTLTPDEVKSL 306
Query: 85 IQKYLG----DGPKLAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIV 140
+ KYL D P+ + T+ L ++ E I+ DG V + +I+
Sbjct: 307 LLKYLDCRPQDLPREVL--TTNPRRLSIIA-ESIR----DGLATWDNWKHVNCDKLTTII 359
Query: 141 --FIDEIDAVGTKRY---------DSNSGGEREIQRTMLELL-NQLDGFDSRV-----QN 183
++ ++ ++ ++ I +L L+ + D V
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAH------IPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 184 RRLSEVYSSLTLIYLPG-DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIF 242
L E + I +P +++ + L +++ I + + D+ +
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD---SDDLIPPYLD 470
Query: 243 N-----I--HTSRMTLAEDVNLQELIMAKDDLS--GADIK----AICTEAGLMAL----- 284
I H + E + L ++ D I+ A ++
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFL--DFRFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 285 ------------RERRMKVTNEDFKKSKESVLYRKKE 309
ER + DF E L K
Sbjct: 529 FYKPYICDNDPKYERLVN-AILDFLPKIEENLICSKY 564
Score = 35.6 bits (81), Expect = 0.023
Identities = 47/334 (14%), Positives = 96/334 (28%), Gaps = 116/334 (34%)
Query: 5 TLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVH--AVVGVLSDDTD 62
L ID N + S+H +I + ++ LL K + ++ VL + +
Sbjct: 204 KLLYQIDPNW-----TSRSDHSSNI--KLRIHSIQAELRRLLKSKPYENCLL-VLLNVQN 255
Query: 63 P------------MVT----AVANQTSATFLRVVGSELIQKYLGDGPKLAVANQTSATFL 106
++T V + SA + + L
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK----------- 304
Query: 107 RVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRT 166
L+ KYL P+ +L R P + I I +
Sbjct: 305 -----SLLLKYLDCRPQ---DLPREVLTTNPRRLSI--------------------IAES 336
Query: 167 MLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDR 226
+ + L D + V +L+ + S + L+PA R
Sbjct: 337 IRDGLATWDNWK-HVNCDKLTTIIES-----------------SLNVLEPAEYRKMFDRL 378
Query: 227 KIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAK--DDLSGADIKAICTEAGLMAL 284
+ FP ++ ++++ D+ +D+ + + L
Sbjct: 379 SV-FP---------------------PSAHIPTILLSLIWFDVIKSDVMVVVNK-----L 411
Query: 285 RERRMKVTNEDFKKSKESV--LYRKKEGTPEGLY 316
+ + + K+S S+ +Y + + E Y
Sbjct: 412 HKYSL--VEKQPKESTISIPSIYLELKVKLENEY 443
>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA,
ATP-binding, nucleotide-binding; 1.60A {Rhodococcus
erythropolis} PDB: 3fp9_A
Length = 153
Score = 42.7 bits (100), Expect = 2e-05
Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 19/135 (14%)
Query: 1 MSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDD 60
G L + +D V TS G + ++ +D D L G +V LN + V +
Sbjct: 8 SGYGVLLSVHEDKTVDVFTS-GRKMRLTCSPNIDTDTLALGQTVRLNEALTIVEAGTYEQ 66
Query: 61 TDPMVTAVANQTSATFLRVVGSELIQKYLGDGPKLAVANQTSATFLRVVGSELIQKYLGD 120
+ T +++ L DG + V + + + L +
Sbjct: 67 VGEIST------------------LREVLDDGLRALVVGHADEERIVWLAAPLAAVFADP 108
Query: 121 GPKLVRELFRVAEEH 135
++
Sbjct: 109 EADIIAYDADSPTRK 123
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 40.4 bits (94), Expect = 5e-04
Identities = 41/220 (18%), Positives = 73/220 (33%), Gaps = 18/220 (8%)
Query: 105 FLRVVGSELIQKYLGDGPKLVRELFRVA---EEHAPSIVFIDEIDAVGTKRYDSNSGGER 161
F +VGSE+ + +++ E FR A V+ E+ + ++ GG
Sbjct: 93 FCPMVGSEVYSTEIK-KTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYG 151
Query: 162 EIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMA-TNRIETLDPALIR 220
+ ++ L G ++ S S GDV I A + ++
Sbjct: 152 KTISHVIIGLKTAKG--TKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTY 209
Query: 221 PGRIDRKIE--FPLPDEKTKRRIFNIHTSRMTLAEDVNLQEL-IMAKDDLSGADIKAICT 277
D + E PLP ++ I V L +L + G DI ++
Sbjct: 210 ATEFDLEAEEYVPLPKGDVHKKKEIIQD--------VTLHDLDVANARPQGGQDILSMMG 261
Query: 278 EAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL 317
+ E K+ E K + + E P L++
Sbjct: 262 QLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLFV 301
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 39.2 bits (92), Expect = 0.001
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 80 VGSELIQKYLGD--GPKLAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAP 137
VG I + L T T + VG E+ + D E++
Sbjct: 61 VGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSI-IRDLTDSAGGAIDAVEQNG- 118
Query: 138 SIVFIDEIDAVGTKRYDSNSGGERE-IQRTMLELL 171
IVFIDEID + K S + RE +QR +L L+
Sbjct: 119 -IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLV 152
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA
replication initiation, DNA BIND protein, AAA+ ATPase;
HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11
c.37.1.20 PDB: 1w5t_A*
Length = 412
Score = 39.1 bits (90), Expect = 0.001
Identities = 33/253 (13%), Positives = 74/253 (29%), Gaps = 46/253 (18%)
Query: 77 LRVVGSELIQKYLGDGPKLAVAN------QTSATFLRVVGSELIQKYLGDGP---KLVRE 127
+ + + +G + A T L ++ + G +++
Sbjct: 69 AKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKA 128
Query: 128 LFRVAEEHA-PSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRL 186
L +V +DE ++ + R + LL + SR R+
Sbjct: 129 LVDNLYVENHYLLVILDEFQSMLSSP--------RIAAEDLYTLLRVHEEIPSRDGVNRI 180
Query: 187 SEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEK-TKRRIFNIH 245
++ + + L + +++ +I F L R ++ I
Sbjct: 181 G----------------FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTIL 224
Query: 246 TSRMTLA------EDVNLQ---ELIMAKDDLSGADIKAI--CTEAGLMALRERRMKVTNE 294
R L E +L+ ++ G+ +AI A MA R ++ +
Sbjct: 225 EQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSED 284
Query: 295 DFKKSKESVLYRK 307
+K+
Sbjct: 285 LVRKAVSENEAAS 297
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 39.3 bits (92), Expect = 0.001
Identities = 24/163 (14%), Positives = 47/163 (28%), Gaps = 35/163 (21%)
Query: 170 LLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNR--IETLDPALIRPGRIDRK 227
+ + Q+ S + +P D ++ A N ++ + PAL R
Sbjct: 225 MQEKKFPITG--QSEMSSGAM--VRTEPVPCDFVLVAAGNLDTVDKMHPAL-----RSRI 275
Query: 228 IEFPLP---DEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD------------------ 266
+ I N +A++V I
Sbjct: 276 RGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKG 335
Query: 267 ---LSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYR 306
L D+ I AG +A+++ + V ED ++ +
Sbjct: 336 HLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKMAKPL 378
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3
catalytic subunit; nucleotide-binding, capsid protein;
2.75A {Murray valley encephalitis virus}
Length = 673
Score = 31.1 bits (70), Expect = 0.61
Identities = 5/59 (8%), Positives = 15/59 (25%), Gaps = 13/59 (22%)
Query: 159 GEREIQRTMLELLNQLDG----FDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET 213
+ + L + + + + + GD ++ T+ E
Sbjct: 419 SVKMSNEIA-QCLQRAGKRVIQLNRKSYDTEYPKC--------KNGDWDFVITTDISEM 468
>1jb0_A Photosystem I P700 chlorophyll A apoprotein A1; membrane protein,
multiprotein-pigment complex, photosynthes; HET: CL1 PQN
BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP:
f.29.1.1 PDB: 3pcq_A* 2o01_A* 2wsc_A* 2wse_A* 2wsf_A*
3lw5_A*
Length = 755
Score = 29.4 bits (65), Expect = 2.0
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 201 DVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIH 245
V+V++ + + T +PG DR + +T I+N+H
Sbjct: 11 KVRVVVDNDPVPTSFEKWAKPGHFDRTLA---RGPQTTTWIWNLH 52
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 28.6 bits (64), Expect = 2.8
Identities = 6/55 (10%), Positives = 14/55 (25%), Gaps = 5/55 (9%)
Query: 159 GEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIET 213
+ L + ++ + Y GD ++ T+ E
Sbjct: 199 SVKMGNEIA-MCLQRAGKKVIQLNRKSYDTEYPKCK----NGDWDFVITTDISEM 248
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 28.7 bits (65), Expect = 3.0
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 15/55 (27%)
Query: 97 VANQTSATFLRV--VGSELIQKYLGDGPKLVRELFRVAEEHA----PSIVFIDEI 145
+A +A R+ V S G K +RE A ++ +I+F+DE+
Sbjct: 70 IARYANADVERISAVTS---------GVKEIREAIERARQNRNAGRRTILFVDEV 115
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 3.3
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 13/40 (32%)
Query: 34 DKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTAVA-NQT 72
+K L+ K+ A + + +DD+ P A+A T
Sbjct: 18 EKQALK---------KLQASLKLYADDSAP---ALAIKAT 45
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH
BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella
tularensis subsp} PDB: 2jjy_A*
Length = 280
Score = 27.2 bits (61), Expect = 8.1
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 14/63 (22%)
Query: 97 VANQTS-----ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVF------IDEI 145
+ + S A + G+EL Y+G V +L E P+ V EI
Sbjct: 34 LLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKL---CAEFNPAAVLPCDVISDQEI 90
Query: 146 DAV 148
+
Sbjct: 91 KDL 93
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel,
allosteric modulation, phenylethanolamine,
N-glycosylation, extracellular; HET: NAG BMA MAN FUC
QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A*
3jpy_A*
Length = 364
Score = 27.1 bits (59), Expect = 9.3
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 42 CSVLLNHKVHAVVGVLSDDTDPMVTAVANQTSAT 75
C ++ + K+ VV D + + + ++ T
Sbjct: 56 CDLMSDRKIQGVVFADDTDQEAIAQILDFISAQT 89
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.135 0.370
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,813,490
Number of extensions: 301048
Number of successful extensions: 778
Number of sequences better than 10.0: 1
Number of HSP's gapped: 714
Number of HSP's successfully gapped: 68
Length of query: 317
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 223
Effective length of database: 4,077,219
Effective search space: 909219837
Effective search space used: 909219837
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.6 bits)