RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7780
(317 letters)
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 223 bits (570), Expect = 6e-73
Identities = 71/209 (33%), Positives = 116/209 (55%), Gaps = 19/209 (9%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
A+A + F + GS+ ++ ++G G VR++F A++ AP I+FIDEIDAVG +R
Sbjct: 64 AIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAG 123
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
GG E ++T+ ++L ++DGF+ + VI ATNR + LD
Sbjct: 124 LGGGHDEREQTLNQMLVEMDGFEGN-------------------EGIIVIAATNRPDVLD 164
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PAL+RPGR DR++ LPD + + +I +H R+ LA D++ + SGAD+ +
Sbjct: 165 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANL 224
Query: 276 CTEAGLMALRERRMKVTNEDFKKSKESVL 304
EA L A R + V+ +F+K+K+ ++
Sbjct: 225 VNEAALFAARGNKRVVSMVEFEKAKDKIM 253
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 217 bits (555), Expect = 1e-70
Identities = 81/203 (39%), Positives = 113/203 (55%), Gaps = 19/203 (9%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
AVA + F+ GS+ ++ ++G G VR+LF A+ HAP IVFIDEIDAVG KR
Sbjct: 61 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 120
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
GG E ++T+ +LL ++DGF+ + V+ ATNR + LD
Sbjct: 121 VGGGNDEREQTLNQLLVEMDGFEKD-------------------TAIVVMAATNRPDILD 161
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PAL+RPGR DR+I PD K + +I IH LAEDV+L L GAD++ +
Sbjct: 162 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENL 221
Query: 276 CTEAGLMALRERRMKVTNEDFKK 298
EA L+A RE R K+T +D ++
Sbjct: 222 LNEAALLAAREGRRKITMKDLEE 244
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 160 bits (405), Expect = 3e-48
Identities = 63/208 (30%), Positives = 108/208 (51%), Gaps = 19/208 (9%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
A+AN+ A F+ + G EL+ + G+ VRE+F A + AP ++F DE+D++ R +
Sbjct: 60 AIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGN 119
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
G R + ++L ++DG ++ +V +I ATNR + +D
Sbjct: 120 IGDGGGAADRVINQILTEMDGMSTK-------------------KNVFIIGATNRPDIID 160
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADIKAI 275
PA++RPGR+D+ I PLPDEK++ I + + +A+DV+L+ L + SGAD+ I
Sbjct: 161 PAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEI 220
Query: 276 CTEAGLMALRERRMKVTNEDFKKSKESV 303
C A +A+RE + ++
Sbjct: 221 CQRACKLAIRESIESEIRRERERQTNPS 248
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 118 bits (297), Expect = 9e-32
Identities = 24/213 (11%), Positives = 56/213 (26%), Gaps = 42/213 (19%)
Query: 95 LAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYD 154
L A + V E + Y D V ++ R +H ++ ID + V
Sbjct: 143 LGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGG 200
Query: 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE-- 212
+ + G R +LL+ + VI + N
Sbjct: 201 NTTSGGIS--RGAFDLLSDIGAMA-------------------ASRGCVVIASLNPTSND 239
Query: 213 -TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGAD 271
+ + R + D + ++ +
Sbjct: 240 DKIVELVKEASRSNSTSLVISTDVDGEWQVLTRTGEGL----------------QRLTHT 283
Query: 272 IKAICTEAGLMALRERRMKVTNEDFKKSKESVL 304
++ E ++ + + + K+ ++V+
Sbjct: 284 LQTSYGEHSVLTIHTSKQSGGKQASGKAIQTVI 316
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 108 bits (270), Expect = 1e-28
Identities = 72/215 (33%), Positives = 114/215 (53%), Gaps = 25/215 (11%)
Query: 90 GDGPKL---AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEID 146
G G L AVAN+T A F + G E++ K G+ +R+ F AE++AP+I+FIDE+D
Sbjct: 48 GTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELD 107
Query: 147 AVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIM 206
A+ KR ++ V+ R +S++ + + + V V+
Sbjct: 108 AIAPKREKTHGE----------------------VERRIVSQLLTLMDGLKQRAHVIVMA 145
Query: 207 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDD 266
ATNR ++DPAL R GR DR+++ +PD + I IHT M LA+DV+L+++
Sbjct: 146 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHG 205
Query: 267 LSGADIKAICTEAGLMALRERRMKVTNEDFKKSKE 301
GAD+ A+C+EA L A+R++ + ED E
Sbjct: 206 HVGADLAALCSEAALQAIRKKMDLIDLEDETIDAE 240
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 86.2 bits (212), Expect = 3e-20
Identities = 20/211 (9%), Positives = 59/211 (27%), Gaps = 19/211 (9%)
Query: 96 AVANQTSATFLRVVGSEL---IQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKR 152
A+ +T + + + +++ + ++ +
Sbjct: 51 AIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGY 110
Query: 153 YDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIE 212
G R ++ L + + ++ +P + R E
Sbjct: 111 NLVIEGTGRTTD-VPIQTATMLQAKGYETK----------MYVMAVPKINSYLGTIERYE 159
Query: 213 TLDPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAKDDLSGADI 272
T+ R K + + + +H + + + +E + S +
Sbjct: 160 TMYADDPMTARATPKQAHDIVVKNLPTNLETLHKTGLFSDIRLYNREGVKL---YSSLET 216
Query: 273 KAICTEAGLMALRERRMKVTNEDFKKSKESV 303
+I + L R KV+ ++ + + E +
Sbjct: 217 PSISPKETLEKELNR--KVSGKEIQPTLERI 245
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 80.9 bits (199), Expect = 6e-18
Identities = 23/217 (10%), Positives = 47/217 (21%), Gaps = 42/217 (19%)
Query: 96 AVANQTSATFLRVVGSELIQKY-LGDGPKLVRELFRVAE------EHAPSIVFIDEIDAV 148
A+ L V + LG +F + PS I+ +D +
Sbjct: 173 ALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNL 232
Query: 149 GTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMAT 208
S + + I+
Sbjct: 233 RDYLDGSVKVNLEKKHLNKRTQIFPP-----------------------------GIVTM 263
Query: 209 NRIETLDPALIRPGRIDRKIEFPLPDEKTK-RRIFNIHTSRMTLAEDVNLQELIMAKDDL 267
N R ++I+F D + + + L+M
Sbjct: 264 NE---YSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRII--QSGIALLLMLIWYR 318
Query: 268 SGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVL 304
A+ + + + ++K K +V
Sbjct: 319 PVAEFAQSIQSRIVEWKERLDKEFSLSVYQKMKFNVA 355
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 57.3 bits (137), Expect = 3e-10
Identities = 25/197 (12%), Positives = 61/197 (30%), Gaps = 28/197 (14%)
Query: 96 AVANQTSATFLRVVGSELIQKYLG-DGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYD 154
+A +++ F+++ + + + + ++++F A + S V +D+I+ +
Sbjct: 59 KIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPI 118
Query: 155 SNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETL 214
R + LL L + + +I T+R + L
Sbjct: 119 G----PRFSNLVLQALLVLLKKAPPQGRKLL------------------IIGTTSRKDVL 156
Query: 215 DPALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLAED--VNLQELIMAKDDLSGADI 272
+ I P+ T ++ + + + + K G
Sbjct: 157 QEMEML-NAFSTTIHV--PNIATGEQLLEALELLGNFKDKERTTIAQQVKGKKVWIGIKK 213
Query: 273 KAICTEAGLMALRERRM 289
+ E L E R+
Sbjct: 214 LLMLIEMSLQMDPEYRV 230
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 52.1 bits (123), Expect = 2e-08
Identities = 32/224 (14%), Positives = 59/224 (26%), Gaps = 28/224 (12%)
Query: 96 AVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDS 155
++T+A F+ + G G F+ + +R
Sbjct: 66 LYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLY 125
Query: 156 NSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLD 215
+ D RL + L + +++ + L+
Sbjct: 126 MFLVLDDAFN---------LAPDILSTFIRLGQEADKLGAF----RIALVIVGHNDAVLN 172
Query: 216 PALIRPGRIDRKIEFPLPDEKTKRRIFNIHTSRMTLA------EDVNLQELIMAKDDLSG 269
I K TK +IF+I R + LQ + +
Sbjct: 173 NLDPSTRGIMGKYVIRFSP-YTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTP 231
Query: 270 ADIKA--------ICTEAGLMALRERRMKVTNEDFKKSKESVLY 305
D I + A + R + ED +KS + VL+
Sbjct: 232 LDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLF 275
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 40.6 bits (94), Expect = 1e-04
Identities = 25/119 (21%), Positives = 44/119 (36%), Gaps = 17/119 (14%)
Query: 135 HAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRVQNRRLSEVYSSLT 194
IVFIDEID + K S + RE +LL ++G ++ +
Sbjct: 114 EQNGIVFIDEIDKICKKGEYSGADVSRE--GVQRDLLPLVEGSTVSTKHGMV-----KTD 166
Query: 195 LIYLPGDVKVIMATNRIETLDPALIRP---GRIDRKIEFPLPDEKTKRRIFNIHTSRMT 250
I + +A+ + P+ + P GR+ ++E RI + +T
Sbjct: 167 HI-------LFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLT 218
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 35.9 bits (81), Expect = 0.004
Identities = 25/204 (12%), Positives = 56/204 (27%), Gaps = 26/204 (12%)
Query: 106 LRVVGSELIQKYLGDGPKLVRELFR--VAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREI 163
L V + + G + + + E+ +V +DE ++ + + E
Sbjct: 100 LIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAA-----ED 154
Query: 164 QRTMLELLNQLDGFDSRVQNRRLSEVYSSLTLIYLPGDVKVIMATNRIETLDPALIRPGR 223
T+L + ++ D + + + + DV+ + + P +
Sbjct: 155 LYTLLRVHEEIPSRDGV----------NRIGFLLVASDVRALS---YMREKIPQVESQIG 201
Query: 224 IDRKIEFPLPDEKTKRRIFNIHTSRMTLAEDVNLQELIMAK------DDLSGADIKAICT 277
+ E + ELI D S
Sbjct: 202 FKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALK 261
Query: 278 EAGLMALRERRMKVTNEDFKKSKE 301
A MA R ++ + +K+
Sbjct: 262 MACEMAEAMGRDSLSEDLVRKAVS 285
>d1ywua1 b.45.2.1 (A:1-125) Hypothetical protein PA4608 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 125
Score = 26.0 bits (57), Expect = 3.7
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 102 SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEH 135
S + LR L++ LGD L REL + H
Sbjct: 94 SISHLR----RLVELNLGDEELLERELALLVSAH 123
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.135 0.370
Gapped
Lambda K H
0.267 0.0619 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,126,245
Number of extensions: 51866
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 17
Length of query: 317
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,240,546
Effective search space: 287806672
Effective search space used: 287806672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)