Query psy7782
Match_columns 225
No_of_seqs 268 out of 2168
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 18:44:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0726|consensus 100.0 1.4E-31 3.1E-36 226.9 9.7 157 69-225 16-172 (440)
2 PTZ00361 26 proteosome regulat 99.9 4.8E-27 1E-31 213.3 16.2 154 71-225 16-170 (438)
3 COG1222 RPT1 ATP-dependent 26S 99.9 4.7E-28 1E-32 210.2 5.0 90 2-91 155-261 (406)
4 KOG0730|consensus 99.9 2E-25 4.4E-30 205.8 5.1 138 2-201 438-592 (693)
5 COG1222 RPT1 ATP-dependent 26S 99.9 3.3E-23 7.2E-28 180.1 13.2 125 99-225 14-138 (406)
6 KOG0733|consensus 99.9 8.8E-24 1.9E-28 193.4 6.7 139 2-202 515-670 (802)
7 KOG0731|consensus 99.9 1.3E-23 2.7E-28 198.4 6.9 89 2-91 315-420 (774)
8 KOG0736|consensus 99.9 1.2E-23 2.5E-28 196.5 5.5 141 2-201 676-833 (953)
9 KOG0734|consensus 99.9 3.4E-23 7.4E-28 187.3 6.5 89 2-91 308-413 (752)
10 KOG0727|consensus 99.9 2.7E-23 5.9E-28 173.8 2.8 90 2-91 159-265 (408)
11 KOG0726|consensus 99.9 5.3E-22 1.2E-26 168.8 5.9 90 2-91 189-295 (440)
12 KOG0733|consensus 99.8 7.3E-22 1.6E-26 180.9 6.3 89 2-91 194-299 (802)
13 KOG0728|consensus 99.8 1.6E-21 3.4E-26 163.2 5.1 91 2-92 151-258 (404)
14 COG0465 HflB ATP-dependent Zn 99.8 2.4E-21 5.3E-26 179.9 6.6 90 2-92 154-260 (596)
15 KOG0652|consensus 99.8 2E-21 4.3E-26 163.4 2.9 90 2-91 175-281 (424)
16 KOG0727|consensus 99.8 1.6E-20 3.5E-25 157.3 6.2 115 109-225 28-142 (408)
17 KOG0735|consensus 99.8 5E-20 1.1E-24 171.2 6.7 139 2-202 671-826 (952)
18 KOG0739|consensus 99.8 2.2E-20 4.8E-25 159.4 1.5 99 2-102 137-252 (439)
19 KOG0738|consensus 99.8 1.3E-19 2.8E-24 159.1 2.2 99 1-100 215-330 (491)
20 KOG0651|consensus 99.7 7.9E-19 1.7E-23 150.4 3.5 89 2-90 136-241 (388)
21 KOG0729|consensus 99.7 7.5E-19 1.6E-23 148.3 1.9 90 2-91 181-287 (435)
22 PTZ00454 26S protease regulato 99.7 3.7E-17 8E-22 147.6 12.8 103 122-224 29-131 (398)
23 COG0464 SpoVK ATPases of the A 99.7 4.7E-18 1E-22 157.5 5.0 90 2-91 246-352 (494)
24 KOG0737|consensus 99.7 2.6E-18 5.7E-23 150.1 -1.8 100 2-103 96-214 (386)
25 KOG0728|consensus 99.7 2.4E-16 5.1E-21 132.2 7.7 113 113-225 18-134 (404)
26 COG1223 Predicted ATPase (AAA+ 99.7 2.1E-17 4.6E-22 138.9 1.1 87 1-91 124-227 (368)
27 TIGR01243 CDC48 AAA family ATP 99.6 1.4E-16 2.9E-21 154.2 6.2 91 1-91 456-563 (733)
28 PTZ00454 26S protease regulato 99.6 6.6E-17 1.4E-21 145.9 1.0 90 1-90 148-254 (398)
29 TIGR03689 pup_AAA proteasome A 99.6 4.7E-16 1E-20 143.7 4.2 90 2-91 186-306 (512)
30 TIGR01241 FtsH_fam ATP-depende 99.6 1.5E-15 3.3E-20 140.9 4.6 90 1-91 58-164 (495)
31 PRK03992 proteasome-activating 99.6 1E-15 2.2E-20 138.1 2.9 91 1-91 134-241 (389)
32 PTZ00361 26 proteosome regulat 99.6 8.2E-16 1.8E-20 140.0 1.8 89 2-90 187-292 (438)
33 KOG0732|consensus 99.5 3.4E-15 7.4E-20 145.2 4.6 86 2-87 269-373 (1080)
34 TIGR03689 pup_AAA proteasome A 99.5 1.2E-13 2.5E-18 127.9 10.9 94 125-220 11-105 (512)
35 TIGR01242 26Sp45 26S proteasom 99.5 3.9E-13 8.5E-18 120.2 12.4 102 123-224 7-108 (364)
36 TIGR01242 26Sp45 26S proteasom 99.5 2E-14 4.3E-19 128.6 3.2 90 1-90 125-231 (364)
37 CHL00206 ycf2 Ycf2; Provisiona 99.5 2.3E-14 5E-19 145.3 3.4 74 16-89 1614-1747(2281)
38 KOG0741|consensus 99.5 5.7E-14 1.2E-18 127.8 5.1 86 10-95 234-345 (744)
39 CHL00195 ycf46 Ycf46; Provisio 99.4 2.3E-14 5E-19 132.3 2.0 79 2-83 232-322 (489)
40 CHL00176 ftsH cell division pr 99.4 4.9E-14 1.1E-18 133.8 3.6 90 1-91 186-292 (638)
41 KOG0743|consensus 99.4 5.7E-14 1.2E-18 126.0 2.2 61 4-64 207-270 (457)
42 KOG0652|consensus 99.4 2E-13 4.3E-18 115.4 4.3 98 127-224 39-157 (424)
43 PRK03992 proteasome-activating 99.4 3.6E-12 7.8E-17 115.1 12.4 103 122-224 15-117 (389)
44 PLN00020 ribulose bisphosphate 99.4 1.4E-13 3E-18 121.8 2.5 65 26-90 142-228 (413)
45 KOG0740|consensus 99.4 1E-13 2.2E-18 124.7 1.4 81 2-83 157-249 (428)
46 TIGR01243 CDC48 AAA family ATP 99.3 4.2E-13 9.2E-18 130.0 3.9 90 1-90 181-287 (733)
47 PRK10733 hflB ATP-dependent me 99.3 3.5E-12 7.7E-17 121.8 6.9 89 2-91 156-261 (644)
48 KOG0730|consensus 99.3 1.8E-12 4E-17 120.5 2.6 89 2-90 188-294 (693)
49 KOG0651|consensus 99.0 2.4E-10 5.1E-15 98.7 2.3 86 139-225 34-119 (388)
50 CHL00181 cbbX CbbX; Provisiona 98.8 1.3E-09 2.8E-14 94.8 2.7 51 1-52 26-79 (287)
51 PF05496 RuvB_N: Holliday junc 98.8 5.3E-09 1.2E-13 87.2 4.0 56 1-64 27-85 (233)
52 TIGR02881 spore_V_K stage V sp 98.8 3.7E-09 8.1E-14 90.4 2.6 51 1-52 9-62 (261)
53 TIGR02880 cbbX_cfxQ probable R 98.7 3.9E-09 8.4E-14 91.6 2.5 49 1-50 25-76 (284)
54 PF00004 AAA: ATPase family as 98.7 1.1E-09 2.4E-14 82.8 -1.9 49 35-83 1-62 (132)
55 KOG0729|consensus 98.6 2.2E-08 4.8E-13 85.3 3.8 70 156-225 91-164 (435)
56 COG0466 Lon ATP-dependent Lon 98.6 2.5E-08 5.5E-13 94.2 2.4 100 2-109 327-449 (782)
57 KOG0742|consensus 98.6 1E-08 2.3E-13 91.6 -0.1 55 29-83 381-446 (630)
58 KOG0744|consensus 98.4 2.5E-08 5.3E-13 86.8 -1.5 73 5-77 149-243 (423)
59 TIGR00763 lon ATP-dependent pr 98.4 2.4E-07 5.2E-12 90.6 4.2 80 1-87 323-424 (775)
60 COG2256 MGS1 ATPase related to 98.4 1.2E-07 2.7E-12 84.6 1.1 59 31-89 47-116 (436)
61 COG2255 RuvB Holliday junction 98.3 3.6E-07 7.8E-12 78.4 3.7 56 1-64 29-87 (332)
62 PRK05201 hslU ATP-dependent pr 98.3 1.6E-07 3.4E-12 85.1 -0.3 82 1-82 18-114 (443)
63 TIGR00390 hslU ATP-dependent p 98.2 7.9E-07 1.7E-11 80.6 2.8 77 1-77 15-106 (441)
64 KOG2004|consensus 98.2 8.5E-07 1.8E-11 84.1 2.8 94 2-103 415-531 (906)
65 TIGR00635 ruvB Holliday juncti 98.1 1.9E-06 4.2E-11 74.9 3.8 53 1-61 7-62 (305)
66 PRK00080 ruvB Holliday junctio 98.0 4.3E-06 9.3E-11 73.9 3.4 53 1-61 28-83 (328)
67 PRK04195 replication factor C 98.0 5E-06 1.1E-10 77.2 3.8 55 1-64 17-74 (482)
68 PRK05342 clpX ATP-dependent pr 98.0 3.3E-06 7.2E-11 76.9 2.1 64 1-64 74-143 (412)
69 TIGR02639 ClpA ATP-dependent C 98.0 2.3E-06 5E-11 83.3 0.9 53 31-83 202-278 (731)
70 PRK10787 DNA-binding ATP-depen 97.9 9.9E-06 2.1E-10 79.3 4.3 57 1-64 325-384 (784)
71 smart00763 AAA_PrkA PrkA AAA d 97.9 7.4E-06 1.6E-10 73.0 2.3 43 1-51 54-97 (361)
72 KOG0989|consensus 97.8 8.3E-06 1.8E-10 70.7 2.4 32 33-64 58-98 (346)
73 KOG2028|consensus 97.8 6.4E-06 1.4E-10 73.2 1.7 48 31-78 161-216 (554)
74 PRK13342 recombination factor 97.8 7E-06 1.5E-10 74.8 2.0 45 32-76 36-85 (413)
75 COG0464 SpoVK ATPases of the A 97.8 4.8E-06 1E-10 77.5 0.7 68 16-83 2-80 (494)
76 CHL00095 clpC Clp protease ATP 97.8 7E-06 1.5E-10 80.9 1.5 57 30-86 198-280 (821)
77 PRK14962 DNA polymerase III su 97.8 1.2E-05 2.5E-10 74.6 2.3 39 1-51 17-55 (472)
78 PRK07940 DNA polymerase III su 97.8 1.1E-05 2.3E-10 73.2 1.9 47 1-50 8-54 (394)
79 PF07728 AAA_5: AAA domain (dy 97.8 5.4E-06 1.2E-10 63.7 -0.1 40 34-73 1-43 (139)
80 PLN03025 replication factor C 97.7 1.8E-05 3.8E-10 69.7 2.3 51 1-64 16-74 (319)
81 cd00009 AAA The AAA+ (ATPases 97.7 1.6E-05 3.6E-10 59.8 1.8 50 2-64 2-57 (151)
82 COG0606 Predicted ATPase with 97.7 2.9E-05 6.3E-10 71.0 3.3 23 32-54 198-220 (490)
83 PRK14961 DNA polymerase III su 97.7 2.4E-05 5.1E-10 70.2 2.3 38 1-50 19-56 (363)
84 TIGR00382 clpX endopeptidase C 97.6 3.1E-05 6.8E-10 70.5 2.6 62 1-62 80-149 (413)
85 PF06068 TIP49: TIP49 C-termin 97.6 2.1E-05 4.6E-10 70.1 1.1 56 1-64 27-87 (398)
86 KOG0736|consensus 97.6 1.8E-05 3.9E-10 75.8 0.5 62 29-90 428-506 (953)
87 KOG0735|consensus 97.6 2.5E-05 5.4E-10 74.3 1.3 55 29-83 428-498 (952)
88 PRK12402 replication factor C 97.6 3.6E-05 7.9E-10 67.5 2.2 38 1-51 18-55 (337)
89 smart00382 AAA ATPases associa 97.6 1.7E-05 3.8E-10 59.0 0.1 19 32-50 2-20 (148)
90 COG1224 TIP49 DNA helicase TIP 97.5 4.5E-05 9.7E-10 67.6 2.5 37 28-64 61-102 (450)
91 PF01078 Mg_chelatase: Magnesi 97.5 4.8E-05 1E-09 62.9 2.5 38 1-53 6-43 (206)
92 PRK14956 DNA polymerase III su 97.5 4.3E-05 9.4E-10 70.6 2.4 38 1-50 21-58 (484)
93 PF05673 DUF815: Protein of un 97.5 6.6E-05 1.4E-09 63.6 3.0 67 1-76 30-102 (249)
94 TIGR02639 ClpA ATP-dependent C 97.5 6.4E-05 1.4E-09 73.3 3.4 53 1-61 457-516 (731)
95 PRK14955 DNA polymerase III su 97.5 4.6E-05 9.9E-10 69.2 2.1 38 1-50 19-56 (397)
96 PRK14963 DNA polymerase III su 97.5 5E-05 1.1E-09 71.0 2.3 38 1-50 17-54 (504)
97 PRK11034 clpA ATP-dependent Cl 97.5 7.9E-05 1.7E-09 72.8 3.3 54 1-62 461-521 (758)
98 PHA02544 44 clamp loader, smal 97.5 8.2E-05 1.8E-09 65.0 3.1 53 1-65 24-79 (316)
99 PRK14958 DNA polymerase III su 97.5 5.9E-05 1.3E-09 70.6 2.2 38 1-50 19-56 (509)
100 PRK10865 protein disaggregatio 97.5 4.1E-05 9E-10 75.8 1.2 53 31-83 198-275 (857)
101 PRK14960 DNA polymerase III su 97.4 6.8E-05 1.5E-09 71.6 2.2 38 1-50 18-55 (702)
102 PRK14964 DNA polymerase III su 97.4 7.3E-05 1.6E-09 69.5 2.4 38 1-50 16-53 (491)
103 PRK06645 DNA polymerase III su 97.4 8.4E-05 1.8E-09 69.5 2.4 38 1-50 24-61 (507)
104 TIGR02640 gas_vesic_GvpN gas v 97.4 9.5E-05 2.1E-09 63.4 2.6 33 32-64 21-56 (262)
105 PRK14949 DNA polymerase III su 97.4 7.6E-05 1.6E-09 73.4 2.1 38 1-50 19-56 (944)
106 PRK11034 clpA ATP-dependent Cl 97.4 7.8E-05 1.7E-09 72.8 1.8 53 31-83 206-282 (758)
107 PRK15455 PrkA family serine pr 97.3 0.00013 2.7E-09 68.8 2.9 55 1-62 79-137 (644)
108 PRK14969 DNA polymerase III su 97.3 0.00011 2.3E-09 69.2 2.4 38 1-50 19-56 (527)
109 PRK05896 DNA polymerase III su 97.3 0.00011 2.3E-09 69.8 2.3 38 1-50 19-56 (605)
110 TIGR03420 DnaA_homol_Hda DnaA 97.3 0.00012 2.5E-09 60.7 2.3 23 30-52 36-58 (226)
111 PRK14957 DNA polymerase III su 97.3 0.00011 2.3E-09 69.3 2.3 38 1-50 19-56 (546)
112 KOG0741|consensus 97.3 6.4E-05 1.4E-09 69.6 0.6 54 30-83 536-602 (744)
113 TIGR02397 dnaX_nterm DNA polym 97.3 0.00013 2.9E-09 64.5 2.2 38 1-50 17-54 (355)
114 PRK14952 DNA polymerase III su 97.3 0.00013 2.7E-09 69.4 2.1 38 1-50 16-53 (584)
115 PRK13341 recombination factor 97.3 0.00013 2.8E-09 70.9 2.2 44 32-75 52-100 (725)
116 PRK08691 DNA polymerase III su 97.3 0.00013 2.9E-09 70.0 2.2 38 1-50 19-56 (709)
117 TIGR03345 VI_ClpV1 type VI sec 97.3 0.00012 2.6E-09 72.4 1.9 53 31-83 207-284 (852)
118 PRK13407 bchI magnesium chelat 97.3 0.00014 3E-09 64.6 2.0 41 1-54 11-51 (334)
119 PRK14954 DNA polymerase III su 97.2 0.00015 3.3E-09 69.3 2.3 38 1-50 19-56 (620)
120 PRK06620 hypothetical protein; 97.2 6.9E-05 1.5E-09 62.5 -0.2 20 33-52 45-64 (214)
121 TIGR00764 lon_rel lon-related 97.2 0.00018 3.9E-09 68.8 2.6 18 33-50 38-55 (608)
122 PRK00440 rfc replication facto 97.2 0.00015 3.2E-09 63.1 1.8 39 1-52 20-58 (319)
123 PRK00131 aroK shikimate kinase 97.2 0.00013 2.9E-09 57.6 1.4 31 30-60 2-35 (175)
124 PRK06305 DNA polymerase III su 97.2 0.00019 4E-09 66.3 2.5 38 1-50 20-57 (451)
125 TIGR01650 PD_CobS cobaltochela 97.2 6.9E-05 1.5E-09 66.1 -0.3 36 29-64 61-99 (327)
126 PRK14970 DNA polymerase III su 97.2 0.00019 4.1E-09 64.2 2.4 38 1-50 20-57 (367)
127 PRK06893 DNA replication initi 97.2 6.1E-05 1.3E-09 63.2 -0.7 21 33-53 40-60 (229)
128 PRK07133 DNA polymerase III su 97.2 0.00018 4E-09 69.5 2.4 38 1-50 21-58 (725)
129 TIGR02928 orc1/cdc6 family rep 97.2 0.00022 4.8E-09 63.5 2.7 41 2-51 19-59 (365)
130 PRK12323 DNA polymerase III su 97.2 0.00018 3.8E-09 68.8 2.1 38 1-50 19-56 (700)
131 TIGR02902 spore_lonB ATP-depen 97.2 0.00026 5.5E-09 66.7 3.0 33 31-63 85-130 (531)
132 PF13207 AAA_17: AAA domain; P 97.2 8.1E-05 1.7E-09 55.5 -0.3 26 35-60 2-30 (121)
133 PRK05563 DNA polymerase III su 97.2 0.00022 4.7E-09 67.6 2.4 38 1-50 19-56 (559)
134 PF01695 IstB_IS21: IstB-like 97.2 7.4E-05 1.6E-09 60.5 -0.7 60 30-90 45-121 (178)
135 PRK14950 DNA polymerase III su 97.1 0.00021 4.6E-09 68.0 2.2 38 1-50 19-56 (585)
136 PRK14953 DNA polymerase III su 97.1 0.00023 5.1E-09 66.3 2.4 38 1-50 19-56 (486)
137 PRK09111 DNA polymerase III su 97.1 0.00021 4.6E-09 68.1 2.0 38 1-50 27-64 (598)
138 PRK07003 DNA polymerase III su 97.1 0.00022 4.8E-09 69.1 2.2 38 1-50 19-56 (830)
139 PRK06526 transposase; Provisio 97.1 0.00011 2.3E-09 62.9 -0.1 21 31-51 97-117 (254)
140 PRK14965 DNA polymerase III su 97.1 0.00023 4.9E-09 67.7 2.0 38 1-50 19-56 (576)
141 TIGR01618 phage_P_loop phage n 97.1 0.00018 3.9E-09 60.2 1.2 25 32-56 12-36 (220)
142 PRK12377 putative replication 97.1 9.7E-05 2.1E-09 63.0 -0.6 22 32-53 101-122 (248)
143 PHA02244 ATPase-like protein 97.1 0.00015 3.2E-09 65.1 0.5 32 30-61 117-151 (383)
144 PRK14951 DNA polymerase III su 97.1 0.00027 5.7E-09 67.6 2.3 38 1-50 19-56 (618)
145 PRK07994 DNA polymerase III su 97.1 0.00026 5.7E-09 67.8 2.2 38 1-50 19-56 (647)
146 PRK08939 primosomal protein Dn 97.1 0.00011 2.5E-09 64.4 -0.3 22 31-52 155-176 (306)
147 TIGR03346 chaperone_ClpB ATP-d 97.1 0.00023 5E-09 70.6 1.8 53 31-83 193-270 (852)
148 PRK14948 DNA polymerase III su 97.1 0.00033 7.1E-09 67.1 2.7 38 1-50 19-56 (620)
149 PRK08903 DnaA regulatory inact 97.1 0.00013 2.9E-09 60.8 -0.0 23 30-52 40-62 (227)
150 PRK06647 DNA polymerase III su 97.1 0.0003 6.6E-09 66.6 2.2 38 1-50 19-56 (563)
151 CHL00081 chlI Mg-protoporyphyr 97.0 0.00034 7.3E-09 62.5 2.4 38 1-51 20-57 (350)
152 COG1484 DnaC DNA replication p 97.0 0.00011 2.5E-09 62.8 -0.7 61 31-91 104-181 (254)
153 PRK08084 DNA replication initi 97.0 0.00016 3.5E-09 60.9 0.2 21 32-52 45-65 (235)
154 PRK08181 transposase; Validate 97.0 0.00014 3.1E-09 62.7 -0.2 33 31-63 105-143 (269)
155 PF00910 RNA_helicase: RNA hel 97.0 0.00018 3.8E-09 53.3 0.2 50 35-90 1-62 (107)
156 PRK08118 topology modulation p 97.0 0.00022 4.7E-09 57.1 0.7 29 33-61 2-33 (167)
157 PRK06835 DNA replication prote 97.0 0.00022 4.7E-09 63.3 0.6 32 33-64 184-221 (329)
158 TIGR03345 VI_ClpV1 type VI sec 97.0 0.00042 9.1E-09 68.7 2.4 43 1-51 569-615 (852)
159 PRK06921 hypothetical protein; 97.0 0.00026 5.6E-09 60.9 0.8 22 31-52 116-137 (266)
160 PRK08116 hypothetical protein; 96.9 0.00015 3.3E-09 62.4 -0.7 34 31-64 113-152 (268)
161 PRK07764 DNA polymerase III su 96.9 0.00042 9.2E-09 68.3 2.2 38 1-50 18-55 (824)
162 CHL00095 clpC Clp protease ATP 96.9 0.00052 1.1E-08 67.9 2.7 43 1-51 512-558 (821)
163 COG1220 HslU ATP-dependent pro 96.9 0.00038 8.2E-09 61.5 1.5 61 1-61 18-82 (444)
164 PF06309 Torsin: Torsin; Inte 96.9 0.001 2.2E-08 50.8 3.5 41 2-50 29-71 (127)
165 PRK14959 DNA polymerase III su 96.9 0.00047 1E-08 65.8 2.0 38 1-50 19-56 (624)
166 PF00158 Sigma54_activat: Sigm 96.9 0.00064 1.4E-08 54.5 2.4 35 30-64 20-60 (168)
167 PF13191 AAA_16: AAA ATPase do 96.9 0.00042 9.2E-09 55.1 1.3 39 2-50 4-42 (185)
168 PF13671 AAA_33: AAA domain; P 96.9 0.00023 5.1E-09 54.5 -0.3 19 35-53 2-20 (143)
169 PF03215 Rad17: Rad17 cell cyc 96.8 0.00072 1.6E-08 63.4 2.9 20 31-50 44-63 (519)
170 PRK00411 cdc6 cell division co 96.8 0.001 2.3E-08 59.8 3.8 34 31-64 54-95 (394)
171 PRK13531 regulatory ATPase Rav 96.8 0.00031 6.8E-09 65.0 0.3 23 30-52 37-59 (498)
172 PRK11331 5-methylcytosine-spec 96.8 0.00044 9.5E-09 63.5 1.2 20 31-50 193-212 (459)
173 PRK07952 DNA replication prote 96.8 0.00027 5.9E-09 60.1 -0.2 32 33-64 100-137 (244)
174 PRK08451 DNA polymerase III su 96.8 0.00063 1.4E-08 64.0 2.2 38 1-50 17-54 (535)
175 TIGR01359 UMP_CMP_kin_fam UMP- 96.8 0.00027 5.8E-09 56.7 -0.3 18 35-52 2-19 (183)
176 PRK07471 DNA polymerase III su 96.8 0.00076 1.7E-08 60.6 2.5 38 1-50 22-59 (365)
177 PRK10865 protein disaggregatio 96.8 0.00066 1.4E-08 67.4 2.1 45 1-53 571-619 (857)
178 KOG1803|consensus 96.8 0.002 4.2E-08 60.6 5.0 18 32-49 201-218 (649)
179 PRK14532 adenylate kinase; Pro 96.8 0.00049 1.1E-08 55.6 0.9 26 34-59 2-30 (188)
180 PHA00729 NTP-binding motif con 96.7 0.00032 6.9E-09 58.9 -0.3 21 33-53 18-38 (226)
181 COG0470 HolB ATPase involved i 96.7 0.00069 1.5E-08 58.9 1.8 19 32-50 24-42 (325)
182 TIGR02903 spore_lon_C ATP-depe 96.7 0.00055 1.2E-08 65.6 1.3 21 31-51 174-194 (615)
183 PRK09183 transposase/IS protei 96.7 0.00036 7.9E-09 59.8 0.0 23 30-52 100-122 (259)
184 TIGR03346 chaperone_ClpB ATP-d 96.7 0.0011 2.3E-08 65.9 3.1 44 1-52 568-615 (852)
185 PF13479 AAA_24: AAA domain 96.7 0.00073 1.6E-08 56.1 1.5 31 33-63 4-34 (213)
186 PF13086 AAA_11: AAA domain; P 96.7 0.00042 9.1E-09 56.8 0.1 16 35-50 20-35 (236)
187 PRK03839 putative kinase; Prov 96.7 0.00048 1E-08 55.3 0.4 27 34-60 2-31 (180)
188 TIGR00602 rad24 checkpoint pro 96.7 0.00081 1.7E-08 64.5 1.9 42 2-51 88-129 (637)
189 cd00464 SK Shikimate kinase (S 96.7 0.00055 1.2E-08 53.1 0.6 28 34-61 1-31 (154)
190 PRK13947 shikimate kinase; Pro 96.7 0.00063 1.4E-08 53.9 0.9 28 34-61 3-33 (171)
191 TIGR02030 BchI-ChlI magnesium 96.7 0.00085 1.8E-08 59.7 1.8 41 1-54 7-47 (337)
192 PRK05564 DNA polymerase III su 96.6 0.0011 2.3E-08 58.3 2.3 38 1-50 7-44 (313)
193 PRK14531 adenylate kinase; Pro 96.6 0.00069 1.5E-08 54.8 1.0 18 33-50 3-20 (183)
194 cd02021 GntK Gluconate kinase 96.6 0.00068 1.5E-08 52.6 0.8 24 35-58 2-28 (150)
195 PRK09112 DNA polymerase III su 96.6 0.0011 2.4E-08 59.4 2.2 40 1-52 26-65 (351)
196 COG0467 RAD55 RecA-superfamily 96.6 0.00072 1.6E-08 57.7 1.1 39 27-65 18-62 (260)
197 PF07724 AAA_2: AAA domain (Cd 96.6 0.00043 9.4E-09 55.7 -0.6 34 31-64 2-42 (171)
198 PRK13949 shikimate kinase; Pro 96.6 0.00077 1.7E-08 54.0 0.9 29 33-61 2-33 (169)
199 TIGR01360 aden_kin_iso1 adenyl 96.6 0.00065 1.4E-08 54.4 0.4 27 34-60 5-34 (188)
200 PRK00149 dnaA chromosomal repl 96.6 0.00049 1.1E-08 63.4 -0.4 21 32-52 148-168 (450)
201 PRK05642 DNA replication initi 96.6 0.00049 1.1E-08 58.0 -0.4 21 32-52 45-65 (234)
202 TIGR03877 thermo_KaiC_1 KaiC d 96.6 0.00094 2E-08 56.3 1.3 38 27-64 16-59 (237)
203 COG0714 MoxR-like ATPases [Gen 96.5 0.00082 1.8E-08 59.4 0.9 36 29-64 40-78 (329)
204 KOG1969|consensus 96.5 0.0012 2.6E-08 63.3 2.0 35 31-65 325-362 (877)
205 KOG1942|consensus 96.5 0.0011 2.4E-08 57.7 1.5 34 31-64 63-101 (456)
206 cd01428 ADK Adenylate kinase ( 96.5 0.00084 1.8E-08 54.1 0.8 25 35-59 2-29 (194)
207 COG1936 Predicted nucleotide k 96.5 0.00076 1.6E-08 54.2 0.5 28 34-61 2-31 (180)
208 PRK07261 topology modulation p 96.5 0.0009 2E-08 53.7 0.8 27 34-60 2-31 (171)
209 TIGR00362 DnaA chromosomal rep 96.5 0.00054 1.2E-08 62.2 -0.5 32 32-63 136-175 (405)
210 TIGR02237 recomb_radB DNA repa 96.5 0.0011 2.4E-08 54.4 1.3 23 28-50 8-30 (209)
211 PRK14088 dnaA chromosomal repl 96.5 0.00053 1.1E-08 63.2 -0.7 22 32-53 130-151 (440)
212 PF03969 AFG1_ATPase: AFG1-lik 96.5 0.0012 2.7E-08 59.2 1.7 22 29-50 59-80 (362)
213 PF13245 AAA_19: Part of AAA d 96.5 0.00094 2E-08 46.5 0.6 15 35-49 13-27 (76)
214 PRK00625 shikimate kinase; Pro 96.5 0.00086 1.9E-08 54.1 0.4 28 34-61 2-32 (173)
215 TIGR03878 thermo_KaiC_2 KaiC d 96.5 0.00097 2.1E-08 57.1 0.8 23 28-50 32-54 (259)
216 PHA02624 large T antigen; Prov 96.4 0.00085 1.9E-08 63.5 0.4 34 28-61 427-463 (647)
217 cd01120 RecA-like_NTPases RecA 96.4 0.00057 1.2E-08 52.8 -0.7 18 35-52 2-19 (165)
218 PRK12422 chromosomal replicati 96.4 0.00065 1.4E-08 62.6 -0.5 31 32-62 141-177 (445)
219 cd01124 KaiC KaiC is a circadi 96.4 0.00098 2.1E-08 53.3 0.5 30 35-64 2-37 (187)
220 KOG3347|consensus 96.4 0.0013 2.9E-08 51.7 1.1 29 33-61 8-39 (176)
221 PF07726 AAA_3: ATPase family 96.4 0.00041 9E-09 53.2 -1.6 29 34-62 1-32 (131)
222 KOG0991|consensus 96.4 0.0024 5.3E-08 53.9 2.8 47 33-79 49-109 (333)
223 PRK14527 adenylate kinase; Pro 96.4 0.0012 2.5E-08 53.7 0.8 23 31-53 5-27 (191)
224 PTZ00088 adenylate kinase 1; P 96.4 0.0015 3.3E-08 55.0 1.5 32 33-64 7-39 (229)
225 TIGR01313 therm_gnt_kin carboh 96.4 0.001 2.2E-08 52.4 0.4 24 35-58 1-27 (163)
226 PRK06217 hypothetical protein; 96.4 0.0012 2.6E-08 53.3 0.8 27 34-60 3-32 (183)
227 PF08298 AAA_PrkA: PrkA AAA do 96.3 0.0031 6.7E-08 56.2 3.3 42 1-50 64-106 (358)
228 PRK08727 hypothetical protein; 96.3 0.00079 1.7E-08 56.7 -0.4 20 33-52 42-61 (233)
229 COG0542 clpA ATP-binding subun 96.3 0.002 4.4E-08 62.7 2.3 46 1-54 494-543 (786)
230 PF13238 AAA_18: AAA domain; P 96.3 0.00085 1.8E-08 50.0 -0.3 16 35-50 1-16 (129)
231 PRK14971 DNA polymerase III su 96.3 0.0021 4.5E-08 61.6 2.3 38 1-50 20-57 (614)
232 PRK07399 DNA polymerase III su 96.3 0.0024 5.2E-08 56.3 2.4 38 1-50 7-44 (314)
233 PF13401 AAA_22: AAA domain; P 96.3 0.00087 1.9E-08 50.4 -0.4 19 32-50 4-22 (131)
234 cd02020 CMPK Cytidine monophos 96.3 0.0013 2.8E-08 50.4 0.5 27 35-61 2-31 (147)
235 COG0563 Adk Adenylate kinase a 96.3 0.00081 1.7E-08 54.5 -0.8 31 34-64 2-33 (178)
236 PRK14526 adenylate kinase; Pro 96.2 0.0011 2.3E-08 55.2 -0.3 31 34-64 2-33 (211)
237 PLN02200 adenylate kinase fami 96.2 0.0013 2.8E-08 55.6 0.2 22 31-52 42-63 (234)
238 COG1102 Cmk Cytidylate kinase 96.2 0.0018 3.8E-08 51.6 0.9 25 35-59 3-30 (179)
239 TIGR00678 holB DNA polymerase 96.2 0.0012 2.6E-08 53.4 -0.0 22 30-51 12-33 (188)
240 cd00227 CPT Chloramphenicol (C 96.2 0.0017 3.7E-08 52.0 0.8 18 33-50 3-20 (175)
241 PRK04328 hypothetical protein; 96.2 0.002 4.3E-08 54.8 1.3 37 28-64 19-61 (249)
242 TIGR01351 adk adenylate kinase 96.2 0.0016 3.6E-08 53.7 0.7 18 35-52 2-19 (210)
243 PRK14530 adenylate kinase; Pro 96.2 0.0015 3.2E-08 54.1 0.4 25 34-58 5-32 (215)
244 cd01394 radB RadB. The archaea 96.2 0.0021 4.6E-08 53.1 1.3 23 28-50 15-37 (218)
245 PRK01184 hypothetical protein; 96.2 0.0016 3.6E-08 52.3 0.6 27 34-60 3-31 (184)
246 PRK14528 adenylate kinase; Pro 96.2 0.0018 3.9E-08 52.6 0.8 20 33-52 2-21 (186)
247 TIGR03015 pepcterm_ATPase puta 96.1 0.0011 2.3E-08 56.4 -0.7 19 34-52 45-63 (269)
248 PRK13948 shikimate kinase; Pro 96.1 0.0024 5.2E-08 51.9 1.3 32 30-61 8-42 (182)
249 PF13177 DNA_pol3_delta2: DNA 96.1 0.0032 7E-08 50.0 1.9 37 2-50 1-37 (162)
250 PRK02496 adk adenylate kinase; 96.1 0.0019 4.1E-08 52.0 0.6 20 34-53 3-22 (184)
251 PF06745 KaiC: KaiC; InterPro 96.1 0.0014 3.1E-08 54.5 -0.2 37 28-64 15-58 (226)
252 COG1219 ClpX ATP-dependent pro 96.1 0.0019 4.1E-08 56.7 0.5 29 32-60 97-128 (408)
253 TIGR02655 circ_KaiC circadian 96.1 0.0024 5.3E-08 59.5 1.3 49 28-78 17-72 (484)
254 COG1474 CDC6 Cdc6-related prot 96.1 0.0045 9.8E-08 55.7 2.9 20 31-50 41-60 (366)
255 PRK05057 aroK shikimate kinase 96.1 0.0026 5.5E-08 51.1 1.2 30 32-61 4-36 (172)
256 PF05729 NACHT: NACHT domain 96.1 0.0017 3.7E-08 50.4 0.1 17 34-50 2-18 (166)
257 TIGR02442 Cob-chelat-sub cobal 96.0 0.0032 7E-08 60.6 2.0 38 1-51 7-44 (633)
258 PLN02674 adenylate kinase 96.0 0.0015 3.2E-08 55.6 -0.4 34 31-64 30-64 (244)
259 PRK00279 adk adenylate kinase; 96.0 0.0022 4.8E-08 53.1 0.7 18 35-52 3-20 (215)
260 PHA02774 E1; Provisional 96.0 0.0016 3.5E-08 61.4 -0.1 27 28-54 430-456 (613)
261 PRK13765 ATP-dependent proteas 96.0 0.0034 7.3E-08 60.3 2.0 20 33-52 51-70 (637)
262 COG0703 AroK Shikimate kinase 96.0 0.0017 3.8E-08 52.2 -0.0 29 33-61 3-34 (172)
263 TIGR02012 tigrfam_recA protein 96.0 0.0026 5.7E-08 56.2 1.1 33 18-50 38-73 (321)
264 PRK06547 hypothetical protein; 96.0 0.0026 5.6E-08 51.2 0.9 30 30-59 13-45 (172)
265 COG3842 PotA ABC-type spermidi 96.0 0.002 4.4E-08 57.5 0.2 28 30-57 27-56 (352)
266 PRK08058 DNA polymerase III su 95.9 0.0044 9.6E-08 54.9 2.2 21 30-50 26-46 (329)
267 PRK08356 hypothetical protein; 95.9 0.002 4.4E-08 52.6 -0.0 31 34-64 7-37 (195)
268 PRK14738 gmk guanylate kinase; 95.9 0.0018 4E-08 53.4 -0.3 31 20-52 3-33 (206)
269 TIGR03881 KaiC_arch_4 KaiC dom 95.9 0.0035 7.5E-08 52.2 1.4 23 28-50 16-38 (229)
270 PF14532 Sigma54_activ_2: Sigm 95.9 0.0025 5.4E-08 49.0 0.4 22 31-52 20-41 (138)
271 PRK08154 anaerobic benzoate ca 95.9 0.0057 1.2E-07 53.7 2.8 33 29-61 130-165 (309)
272 PRK09087 hypothetical protein; 95.9 0.0019 4.1E-08 54.3 -0.4 19 33-51 45-63 (226)
273 PRK06067 flagellar accessory p 95.9 0.0038 8.3E-08 52.2 1.5 37 28-64 21-63 (234)
274 PRK04040 adenylate kinase; Pro 95.8 0.0029 6.3E-08 51.6 0.6 19 32-50 2-20 (188)
275 PRK13946 shikimate kinase; Pro 95.8 0.0032 6.9E-08 50.9 0.8 31 31-61 9-42 (184)
276 PRK05973 replicative DNA helic 95.8 0.0036 7.7E-08 53.0 1.1 37 28-64 60-102 (237)
277 KOG1970|consensus 95.8 0.0088 1.9E-07 55.9 3.7 26 33-58 111-139 (634)
278 PRK08533 flagellar accessory p 95.8 0.0041 8.8E-08 52.3 1.4 23 28-50 20-42 (230)
279 cd01130 VirB11-like_ATPase Typ 95.8 0.0032 6.9E-08 51.0 0.7 26 29-54 22-47 (186)
280 COG3839 MalK ABC-type sugar tr 95.8 0.0026 5.6E-08 56.5 0.1 23 34-56 31-53 (338)
281 PRK06762 hypothetical protein; 95.8 0.0032 6.9E-08 49.7 0.6 20 32-51 2-21 (166)
282 PRK09361 radB DNA repair and r 95.8 0.0042 9.2E-08 51.6 1.3 23 28-50 19-41 (225)
283 PRK03731 aroL shikimate kinase 95.8 0.0036 7.8E-08 49.6 0.8 29 33-61 3-34 (171)
284 cd00983 recA RecA is a bacter 95.7 0.004 8.7E-08 55.1 1.1 32 19-50 39-73 (325)
285 PRK00771 signal recognition pa 95.7 0.005 1.1E-07 56.7 1.6 20 31-50 94-113 (437)
286 smart00350 MCM minichromosome 95.7 0.0044 9.6E-08 58.1 1.4 20 33-52 237-256 (509)
287 PRK14087 dnaA chromosomal repl 95.7 0.0023 5E-08 59.1 -0.6 21 32-52 141-161 (450)
288 TIGR02236 recomb_radA DNA repa 95.7 0.0046 1E-07 54.1 1.3 23 28-50 91-113 (310)
289 cd01123 Rad51_DMC1_radA Rad51_ 95.7 0.0047 1E-07 51.5 1.3 23 28-50 15-37 (235)
290 PF00308 Bac_DnaA: Bacterial d 95.7 0.0017 3.8E-08 54.2 -1.4 21 32-52 34-54 (219)
291 cd00820 PEPCK_HprK Phosphoenol 95.7 0.0038 8.3E-08 46.4 0.6 25 29-53 12-36 (107)
292 PRK10416 signal recognition pa 95.7 0.0043 9.2E-08 54.8 1.0 24 31-54 113-136 (318)
293 cd00046 DEXDc DEAD-like helica 95.6 0.0047 1E-07 45.7 0.9 18 33-50 1-18 (144)
294 TIGR00064 ftsY signal recognit 95.6 0.0065 1.4E-07 52.5 1.9 21 30-50 70-90 (272)
295 PRK10078 ribose 1,5-bisphospho 95.6 0.0029 6.4E-08 51.1 -0.2 22 33-54 3-24 (186)
296 TIGR02974 phageshock_pspF psp 95.6 0.0089 1.9E-07 53.0 2.8 34 31-64 21-60 (329)
297 PRK04301 radA DNA repair and r 95.6 0.006 1.3E-07 53.7 1.6 23 28-50 98-120 (317)
298 cd02019 NK Nucleoside/nucleoti 95.5 0.004 8.6E-08 42.2 0.3 18 35-52 2-19 (69)
299 PRK00300 gmk guanylate kinase; 95.5 0.0041 8.8E-08 50.8 0.4 24 31-54 4-27 (205)
300 PRK08233 hypothetical protein; 95.5 0.0029 6.3E-08 50.3 -0.5 18 34-51 5-22 (182)
301 PF12775 AAA_7: P-loop contain 95.5 0.0038 8.2E-08 53.9 0.1 21 30-50 31-51 (272)
302 PHA02530 pseT polynucleotide k 95.5 0.004 8.7E-08 53.9 0.2 20 33-52 3-22 (300)
303 TIGR03263 guanyl_kin guanylate 95.5 0.0035 7.5E-08 50.1 -0.2 21 34-54 3-23 (180)
304 cd01393 recA_like RecA is a b 95.5 0.0073 1.6E-07 50.0 1.7 23 28-50 15-37 (226)
305 TIGR02322 phosphon_PhnN phosph 95.4 0.003 6.6E-08 50.5 -0.7 20 34-53 3-22 (179)
306 PF00931 NB-ARC: NB-ARC domain 95.4 0.0077 1.7E-07 51.5 1.8 23 30-52 17-39 (287)
307 KOG0990|consensus 95.4 0.0076 1.7E-07 52.9 1.7 17 33-49 63-79 (360)
308 PLN02459 probable adenylate ki 95.4 0.0036 7.9E-08 53.7 -0.3 31 34-64 31-62 (261)
309 COG1116 TauB ABC-type nitrate/ 95.4 0.0039 8.4E-08 52.9 -0.2 24 32-55 29-52 (248)
310 TIGR03880 KaiC_arch_3 KaiC dom 95.4 0.0068 1.5E-07 50.3 1.3 37 28-64 12-54 (224)
311 PRK09354 recA recombinase A; P 95.4 0.0065 1.4E-07 54.3 1.2 23 28-50 56-78 (349)
312 COG4525 TauB ABC-type taurine 95.4 0.0053 1.1E-07 50.7 0.5 27 28-54 27-53 (259)
313 TIGR00150 HI0065_YjeE ATPase, 95.3 0.005 1.1E-07 47.6 0.2 25 30-54 20-44 (133)
314 PRK10536 hypothetical protein; 95.3 0.004 8.7E-08 53.3 -0.3 19 33-51 75-93 (262)
315 TIGR01817 nifA Nif-specific re 95.3 0.0099 2.1E-07 56.0 2.2 34 31-64 218-257 (534)
316 TIGR03499 FlhF flagellar biosy 95.3 0.0084 1.8E-07 52.0 1.6 22 31-52 193-214 (282)
317 COG1855 ATPase (PilT family) [ 95.3 0.0057 1.2E-07 56.1 0.6 32 22-54 254-285 (604)
318 PRK05541 adenylylsulfate kinas 95.3 0.0066 1.4E-07 48.5 0.9 23 30-52 5-27 (176)
319 TIGR02238 recomb_DMC1 meiotic 95.3 0.0097 2.1E-07 52.4 1.9 23 28-50 92-114 (313)
320 COG4088 Predicted nucleotide k 95.2 0.0072 1.6E-07 50.2 0.9 17 34-50 3-19 (261)
321 COG4178 ABC-type uncharacteriz 95.2 0.0054 1.2E-07 58.2 0.3 32 28-59 415-447 (604)
322 PRK13808 adenylate kinase; Pro 95.2 0.0039 8.5E-08 55.3 -0.6 18 34-51 2-19 (333)
323 PF13521 AAA_28: AAA domain; P 95.2 0.0026 5.6E-08 50.2 -1.7 24 35-58 2-27 (163)
324 PTZ00112 origin recognition co 95.2 0.015 3.2E-07 57.7 3.1 39 4-50 761-799 (1164)
325 PF03266 NTPase_1: NTPase; In 95.2 0.0051 1.1E-07 49.3 -0.0 17 34-50 1-17 (168)
326 TIGR00376 DNA helicase, putati 95.2 0.0062 1.3E-07 58.7 0.5 18 33-50 174-191 (637)
327 PRK14722 flhF flagellar biosyn 95.2 0.0079 1.7E-07 54.2 1.1 21 30-50 135-155 (374)
328 TIGR00235 udk uridine kinase. 95.2 0.0038 8.3E-08 51.3 -0.9 20 35-54 9-28 (207)
329 PRK11608 pspF phage shock prot 95.2 0.012 2.6E-07 52.1 2.2 34 31-64 28-67 (326)
330 PF13173 AAA_14: AAA domain 95.2 0.0068 1.5E-07 46.0 0.6 21 33-53 3-23 (128)
331 PF13604 AAA_30: AAA domain; P 95.1 0.014 3E-07 47.8 2.3 18 33-50 19-36 (196)
332 PRK14529 adenylate kinase; Pro 95.1 0.006 1.3E-07 51.2 0.1 17 34-50 2-18 (223)
333 PF10662 PduV-EutP: Ethanolami 95.1 0.0067 1.4E-07 47.4 0.4 22 33-54 2-23 (143)
334 PRK09825 idnK D-gluconate kina 95.1 0.0044 9.5E-08 50.0 -0.7 22 33-54 4-25 (176)
335 PLN03187 meiotic recombination 95.1 0.011 2.3E-07 52.9 1.7 23 28-50 122-144 (344)
336 TIGR03574 selen_PSTK L-seryl-t 95.1 0.0048 1E-07 52.2 -0.5 17 35-51 2-18 (249)
337 PRK05707 DNA polymerase III su 95.1 0.0055 1.2E-07 54.3 -0.2 21 30-50 20-40 (328)
338 COG4619 ABC-type uncharacteriz 95.1 0.0055 1.2E-07 49.4 -0.2 27 28-54 25-51 (223)
339 PRK12724 flagellar biosynthesi 95.1 0.017 3.7E-07 52.9 2.9 22 32-53 223-244 (432)
340 PF00005 ABC_tran: ABC transpo 95.1 0.0044 9.5E-08 47.1 -0.8 28 29-56 8-35 (137)
341 cd02023 UMPK Uridine monophosp 95.1 0.0044 9.6E-08 50.4 -0.8 20 35-54 2-21 (198)
342 PRK08699 DNA polymerase III su 95.0 0.006 1.3E-07 54.0 -0.1 21 30-50 19-39 (325)
343 cd01131 PilT Pilus retraction 95.0 0.0049 1.1E-07 50.6 -0.7 18 34-51 3-20 (198)
344 PRK14086 dnaA chromosomal repl 95.0 0.0056 1.2E-07 58.4 -0.5 19 33-51 315-333 (617)
345 PRK13764 ATPase; Provisional 95.0 0.0059 1.3E-07 58.2 -0.3 24 30-53 255-278 (602)
346 cd01918 HprK_C HprK/P, the bif 95.0 0.0081 1.8E-07 47.3 0.5 19 32-50 14-32 (149)
347 COG2607 Predicted ATPase (AAA+ 94.9 0.012 2.6E-07 50.0 1.4 55 1-64 63-123 (287)
348 PRK15429 formate hydrogenlyase 94.9 0.016 3.4E-07 56.3 2.5 34 31-64 398-437 (686)
349 cd02022 DPCK Dephospho-coenzym 94.9 0.0092 2E-07 48.0 0.7 25 35-59 2-28 (179)
350 TIGR02173 cyt_kin_arch cytidyl 94.9 0.0084 1.8E-07 47.2 0.5 26 35-60 3-31 (171)
351 PRK04182 cytidylate kinase; Pr 94.9 0.0085 1.8E-07 47.5 0.5 25 35-59 3-30 (180)
352 cd02027 APSK Adenosine 5'-phos 94.9 0.005 1.1E-07 48.2 -0.9 20 35-54 2-21 (149)
353 COG1124 DppF ABC-type dipeptid 94.9 0.0063 1.4E-07 51.5 -0.3 25 31-55 32-56 (252)
354 cd04159 Arl10_like Arl10-like 94.9 0.0078 1.7E-07 45.8 0.2 24 35-58 2-25 (159)
355 PF00406 ADK: Adenylate kinase 94.9 0.005 1.1E-07 47.9 -0.9 28 37-64 1-29 (151)
356 TIGR02655 circ_KaiC circadian 94.9 0.011 2.4E-07 55.1 1.3 23 28-50 259-281 (484)
357 PRK12726 flagellar biosynthesi 94.9 0.012 2.5E-07 53.3 1.3 44 4-50 181-224 (407)
358 PLN03210 Resistant to P. syrin 94.9 0.013 2.9E-07 60.0 1.8 41 1-52 187-227 (1153)
359 PRK05480 uridine/cytidine kina 94.9 0.0055 1.2E-07 50.4 -0.8 23 31-53 5-27 (209)
360 PF01637 Arch_ATPase: Archaeal 94.8 0.013 2.8E-07 47.9 1.3 20 31-50 19-38 (234)
361 PF00448 SRP54: SRP54-type pro 94.8 0.0058 1.3E-07 50.2 -0.9 19 32-50 1-19 (196)
362 PRK05022 anaerobic nitric oxid 94.8 0.019 4.2E-07 53.8 2.5 34 31-64 209-248 (509)
363 PRK10867 signal recognition pa 94.8 0.013 2.9E-07 53.8 1.4 20 31-50 99-118 (433)
364 cd00984 DnaB_C DnaB helicase C 94.7 0.013 2.8E-07 49.0 1.2 37 28-64 9-52 (242)
365 PF01443 Viral_helicase1: Vira 94.7 0.0082 1.8E-07 49.7 -0.0 16 35-50 1-16 (234)
366 PRK15424 propionate catabolism 94.7 0.013 2.9E-07 55.3 1.3 34 31-64 241-288 (538)
367 PRK06696 uridine kinase; Valid 94.7 0.02 4.3E-07 47.7 2.2 20 31-50 21-40 (223)
368 TIGR00368 Mg chelatase-related 94.7 0.01 2.2E-07 55.5 0.5 23 32-54 211-233 (499)
369 cd03115 SRP The signal recogni 94.7 0.0079 1.7E-07 47.8 -0.3 16 35-50 3-18 (173)
370 PF02562 PhoH: PhoH-like prote 94.6 0.013 2.9E-07 48.5 1.0 18 33-50 20-37 (205)
371 COG2812 DnaX DNA polymerase II 94.6 0.017 3.6E-07 54.1 1.7 38 1-50 19-56 (515)
372 PF13555 AAA_29: P-loop contai 94.6 0.014 2.9E-07 39.1 0.8 17 34-50 25-41 (62)
373 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.6 0.0083 1.8E-07 49.5 -0.3 27 29-55 27-53 (218)
374 cd01128 rho_factor Transcripti 94.6 0.011 2.4E-07 50.4 0.5 23 31-53 15-37 (249)
375 COG1221 PspF Transcriptional r 94.6 0.018 3.9E-07 52.3 1.8 34 31-64 100-140 (403)
376 PF08477 Miro: Miro-like prote 94.6 0.0058 1.3E-07 45.0 -1.2 24 35-58 2-25 (119)
377 PRK00889 adenylylsulfate kinas 94.6 0.0083 1.8E-07 47.8 -0.4 23 32-54 4-26 (175)
378 PRK11823 DNA repair protein Ra 94.6 0.014 3E-07 53.9 1.1 36 28-63 76-117 (446)
379 TIGR02782 TrbB_P P-type conjug 94.6 0.013 2.9E-07 51.2 0.9 23 30-52 130-152 (299)
380 KOG0060|consensus 94.5 0.013 2.8E-07 55.1 0.7 26 29-54 458-483 (659)
381 KOG2680|consensus 94.5 0.017 3.6E-07 50.6 1.3 37 28-64 62-103 (454)
382 PF01926 MMR_HSR1: 50S ribosom 94.5 0.01 2.2E-07 43.8 0.0 31 35-65 2-32 (116)
383 PRK09302 circadian clock prote 94.5 0.016 3.4E-07 54.3 1.2 37 28-64 27-70 (509)
384 PRK12723 flagellar biosynthesi 94.5 0.017 3.8E-07 52.4 1.4 20 31-50 173-192 (388)
385 COG0396 sufC Cysteine desulfur 94.5 0.012 2.6E-07 49.5 0.4 43 22-64 18-62 (251)
386 TIGR01420 pilT_fam pilus retra 94.5 0.011 2.5E-07 52.6 0.2 30 22-51 112-141 (343)
387 TIGR03410 urea_trans_UrtE urea 94.5 0.011 2.3E-07 49.3 0.0 27 29-55 23-49 (230)
388 cd01878 HflX HflX subfamily. 94.5 0.03 6.6E-07 45.4 2.7 27 31-57 40-66 (204)
389 PRK14737 gmk guanylate kinase; 94.5 0.011 2.3E-07 48.2 0.0 22 31-52 3-24 (186)
390 PRK06851 hypothetical protein; 94.5 0.14 3E-06 46.2 7.1 20 31-50 29-48 (367)
391 cd00071 GMPK Guanosine monopho 94.4 0.0092 2E-07 46.0 -0.4 20 35-54 2-21 (137)
392 TIGR02239 recomb_RAD51 DNA rep 94.4 0.022 4.7E-07 50.3 1.9 24 28-51 92-115 (316)
393 PTZ00035 Rad51 protein; Provis 94.4 0.02 4.3E-07 51.0 1.6 23 28-50 114-136 (337)
394 cd04155 Arl3 Arl3 subfamily. 94.4 0.012 2.5E-07 46.2 0.2 26 32-57 14-39 (173)
395 TIGR02329 propionate_PrpR prop 94.4 0.028 6.1E-07 53.0 2.7 34 31-64 234-273 (526)
396 cd04163 Era Era subfamily. Er 94.4 0.016 3.5E-07 44.3 0.9 27 34-60 5-31 (168)
397 PF06414 Zeta_toxin: Zeta toxi 94.4 0.015 3.3E-07 47.5 0.8 21 30-50 13-33 (199)
398 PRK14974 cell division protein 94.4 0.024 5.2E-07 50.5 2.1 20 31-50 139-158 (336)
399 PF05621 TniB: Bacterial TniB 94.4 0.023 5.1E-07 49.6 1.9 43 1-50 37-79 (302)
400 cd03247 ABCC_cytochrome_bd The 94.4 0.011 2.5E-07 47.2 -0.0 27 29-55 25-51 (178)
401 PRK12339 2-phosphoglycerate ki 94.4 0.0089 1.9E-07 49.2 -0.7 23 32-54 3-25 (197)
402 TIGR02315 ABC_phnC phosphonate 94.4 0.011 2.5E-07 49.5 -0.0 27 29-55 25-51 (243)
403 TIGR02858 spore_III_AA stage I 94.3 0.012 2.6E-07 50.8 0.0 23 32-54 111-133 (270)
404 cd03262 ABC_HisP_GlnQ_permease 94.3 0.011 2.5E-07 48.4 -0.1 27 29-55 23-49 (213)
405 KOG1533|consensus 94.3 0.028 6.1E-07 47.5 2.2 30 33-62 3-38 (290)
406 cd03269 ABC_putative_ATPase Th 94.3 0.012 2.6E-07 48.3 0.0 27 29-55 23-49 (210)
407 KOG1802|consensus 94.3 0.04 8.7E-07 52.7 3.5 54 36-90 429-489 (935)
408 PRK11889 flhF flagellar biosyn 94.3 0.025 5.5E-07 51.5 2.1 22 32-53 241-262 (436)
409 PRK13894 conjugal transfer ATP 94.3 0.016 3.4E-07 51.3 0.8 24 30-53 146-169 (319)
410 PRK13833 conjugal transfer pro 94.3 0.016 3.4E-07 51.4 0.6 23 30-52 142-164 (323)
411 PRK05703 flhF flagellar biosyn 94.3 0.022 4.7E-07 52.3 1.6 19 32-50 221-239 (424)
412 KOG0745|consensus 94.2 0.019 4.1E-07 52.5 1.1 27 32-58 226-255 (564)
413 cd00876 Ras Ras family. The R 94.2 0.012 2.6E-07 45.1 -0.2 22 35-56 2-23 (160)
414 smart00175 RAB Rab subfamily o 94.2 0.013 2.7E-07 45.3 -0.0 24 34-57 2-25 (164)
415 KOG2383|consensus 94.2 0.023 4.9E-07 51.5 1.5 20 30-49 112-131 (467)
416 cd03256 ABC_PhnC_transporter A 94.2 0.013 2.8E-07 49.1 -0.1 27 29-55 24-50 (241)
417 TIGR02673 FtsE cell division A 94.2 0.012 2.7E-07 48.3 -0.1 27 29-55 25-51 (214)
418 cd03258 ABC_MetN_methionine_tr 94.2 0.012 2.7E-07 49.0 -0.2 27 29-55 28-54 (233)
419 cd03292 ABC_FtsE_transporter F 94.2 0.012 2.5E-07 48.4 -0.4 27 29-55 24-50 (214)
420 PRK04296 thymidine kinase; Pro 94.1 0.015 3.2E-07 47.4 0.2 17 34-50 4-20 (190)
421 cd04156 ARLTS1 ARLTS1 subfamil 94.1 0.018 3.9E-07 44.5 0.6 24 35-58 2-25 (160)
422 TIGR03608 L_ocin_972_ABC putat 94.1 0.012 2.5E-07 48.1 -0.5 27 29-55 21-47 (206)
423 PRK06964 DNA polymerase III su 94.1 0.019 4E-07 51.3 0.8 21 30-50 19-39 (342)
424 cd03224 ABC_TM1139_LivF_branch 94.1 0.014 3E-07 48.2 -0.1 27 29-55 23-49 (222)
425 cd03235 ABC_Metallic_Cations A 94.1 0.015 3.2E-07 47.8 0.1 27 29-55 22-48 (213)
426 cd03283 ABC_MutS-like MutS-lik 94.1 0.0091 2E-07 49.1 -1.2 30 25-54 18-47 (199)
427 PF00519 PPV_E1_C: Papillomavi 94.0 0.02 4.4E-07 51.7 0.9 23 28-50 258-280 (432)
428 PLN03186 DNA repair protein RA 94.0 0.029 6.3E-07 50.1 1.9 23 28-50 119-141 (342)
429 PRK13851 type IV secretion sys 94.0 0.012 2.6E-07 52.5 -0.5 26 29-54 159-184 (344)
430 TIGR00960 3a0501s02 Type II (G 94.0 0.014 3E-07 48.1 -0.1 27 29-55 26-52 (216)
431 TIGR01978 sufC FeS assembly AT 94.0 0.016 3.5E-07 48.5 0.3 27 29-55 23-49 (243)
432 TIGR01166 cbiO cobalt transpor 94.0 0.014 3.1E-07 47.1 -0.1 27 29-55 15-41 (190)
433 cd04138 H_N_K_Ras_like H-Ras/N 94.0 0.015 3.3E-07 44.6 0.1 25 34-58 3-27 (162)
434 cd01121 Sms Sms (bacterial rad 94.0 0.021 4.5E-07 51.6 0.9 31 20-50 68-100 (372)
435 PRK12338 hypothetical protein; 94.0 0.016 3.5E-07 51.1 0.2 20 31-50 3-22 (319)
436 cd03226 ABC_cobalt_CbiO_domain 94.0 0.014 3E-07 47.7 -0.2 27 29-55 23-49 (205)
437 cd03219 ABC_Mj1267_LivG_branch 94.0 0.016 3.4E-07 48.4 0.1 27 29-55 23-49 (236)
438 PRK11124 artP arginine transpo 94.0 0.015 3.1E-07 48.9 -0.1 27 29-55 25-51 (242)
439 TIGR02688 conserved hypothetic 94.0 0.017 3.8E-07 52.8 0.4 22 30-51 207-228 (449)
440 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.0 0.014 3.1E-07 45.2 -0.2 27 29-55 23-49 (144)
441 PRK14730 coaE dephospho-CoA ki 94.0 0.018 3.8E-07 47.2 0.4 26 34-59 3-31 (195)
442 PRK10247 putative ABC transpor 94.0 0.015 3.3E-07 48.4 -0.1 27 29-55 30-56 (225)
443 PF01057 Parvo_NS1: Parvovirus 93.9 0.027 5.9E-07 48.6 1.4 25 30-54 111-135 (271)
444 cd04137 RheB Rheb (Ras Homolog 93.9 0.017 3.8E-07 45.7 0.2 26 33-58 2-27 (180)
445 PRK08769 DNA polymerase III su 93.9 0.034 7.4E-07 49.1 2.1 21 30-50 24-44 (319)
446 TIGR02211 LolD_lipo_ex lipopro 93.9 0.014 3.1E-07 48.1 -0.3 27 29-55 28-54 (221)
447 smart00173 RAS Ras subfamily o 93.9 0.016 3.5E-07 44.9 0.0 25 34-58 2-26 (164)
448 cd04119 RJL RJL (RabJ-Like) su 93.9 0.017 3.7E-07 44.6 0.1 25 34-58 2-26 (168)
449 cd03228 ABCC_MRP_Like The MRP 93.9 0.015 3.3E-07 46.2 -0.1 27 29-55 25-51 (171)
450 cd03216 ABC_Carb_Monos_I This 93.9 0.014 3E-07 46.2 -0.4 27 29-55 23-49 (163)
451 cd02028 UMPK_like Uridine mono 93.9 0.018 3.8E-07 46.5 0.2 16 35-50 2-17 (179)
452 TIGR03005 ectoine_ehuA ectoine 93.9 0.016 3.5E-07 49.0 -0.1 27 29-55 23-49 (252)
453 PLN02199 shikimate kinase 93.9 0.024 5.2E-07 49.6 1.0 31 31-61 101-134 (303)
454 TIGR00959 ffh signal recogniti 93.9 0.026 5.6E-07 51.9 1.3 20 31-50 98-117 (428)
455 TIGR01425 SRP54_euk signal rec 93.9 0.027 5.9E-07 51.7 1.4 20 31-50 99-118 (429)
456 PF00485 PRK: Phosphoribulokin 93.9 0.015 3.2E-07 47.3 -0.3 16 35-50 2-17 (194)
457 PRK09376 rho transcription ter 93.9 0.015 3.3E-07 52.7 -0.2 21 33-53 170-190 (416)
458 PF04851 ResIII: Type III rest 93.9 0.037 8E-07 43.5 2.0 20 31-50 24-43 (184)
459 cd03257 ABC_NikE_OppD_transpor 93.9 0.017 3.7E-07 47.8 0.1 27 29-55 28-54 (228)
460 PRK14247 phosphate ABC transpo 93.9 0.016 3.5E-07 48.8 -0.1 27 29-55 26-52 (250)
461 TIGR02323 CP_lyasePhnK phospho 93.8 0.016 3.4E-07 49.0 -0.2 27 29-55 26-52 (253)
462 COG3854 SpoIIIAA ncharacterize 93.8 0.024 5.3E-07 47.9 0.9 20 31-50 136-155 (308)
463 cd01867 Rab8_Rab10_Rab13_like 93.8 0.016 3.4E-07 45.4 -0.2 26 33-58 4-29 (167)
464 KOG0064|consensus 93.8 0.02 4.4E-07 53.6 0.4 30 28-57 504-534 (728)
465 cd03225 ABC_cobalt_CbiO_domain 93.8 0.017 3.7E-07 47.3 -0.0 26 30-55 25-50 (211)
466 cd03234 ABCG_White The White s 93.8 0.018 3.8E-07 47.9 -0.0 27 29-55 30-56 (226)
467 cd02024 NRK1 Nicotinamide ribo 93.8 0.015 3.2E-07 47.5 -0.5 19 35-53 2-20 (187)
468 cd03261 ABC_Org_Solvent_Resist 93.8 0.018 3.8E-07 48.1 -0.0 27 29-55 23-49 (235)
469 cd03260 ABC_PstB_phosphate_tra 93.8 0.015 3.2E-07 48.3 -0.5 28 29-56 23-50 (227)
470 cd03301 ABC_MalK_N The N-termi 93.7 0.016 3.4E-07 47.6 -0.3 27 29-55 23-49 (213)
471 cd03264 ABC_drug_resistance_li 93.7 0.015 3.4E-07 47.6 -0.4 22 34-55 27-48 (211)
472 cd03254 ABCC_Glucan_exporter_l 93.7 0.016 3.6E-07 48.0 -0.2 25 31-55 28-52 (229)
473 cd03218 ABC_YhbG The ABC trans 93.7 0.018 3.9E-07 47.9 -0.0 27 29-55 23-49 (232)
474 TIGR02788 VirB11 P-type DNA tr 93.7 0.019 4.1E-07 50.3 0.1 27 28-54 140-166 (308)
475 PRK13541 cytochrome c biogenes 93.7 0.018 3.9E-07 46.8 -0.1 27 29-55 23-49 (195)
476 PRK13543 cytochrome c biogenes 93.7 0.016 3.5E-07 47.8 -0.3 27 29-55 34-60 (214)
477 cd03213 ABCG_EPDR ABCG transpo 93.7 0.019 4.1E-07 46.8 0.0 28 29-56 32-59 (194)
478 cd03266 ABC_NatA_sodium_export 93.7 0.017 3.8E-07 47.5 -0.2 27 29-55 28-54 (218)
479 cd04113 Rab4 Rab4 subfamily. 93.7 0.018 3.8E-07 44.6 -0.2 24 34-57 2-25 (161)
480 cd03250 ABCC_MRP_domain1 Domai 93.7 0.018 3.9E-07 47.0 -0.1 27 29-55 28-54 (204)
481 cd03293 ABC_NrtD_SsuB_transpor 93.7 0.016 3.4E-07 48.0 -0.5 27 29-55 27-53 (220)
482 cd03296 ABC_CysA_sulfate_impor 93.6 0.018 3.9E-07 48.3 -0.2 27 29-55 25-51 (239)
483 cd03223 ABCD_peroxisomal_ALDP 93.6 0.018 4E-07 45.7 -0.1 27 29-55 24-50 (166)
484 PRK10895 lipopolysaccharide AB 93.6 0.018 3.8E-07 48.3 -0.2 27 29-55 26-52 (241)
485 PRK04220 2-phosphoglycerate ki 93.6 0.032 6.9E-07 48.9 1.3 24 30-53 90-113 (301)
486 PRK11629 lolD lipoprotein tran 93.6 0.019 4.1E-07 47.9 -0.1 27 29-55 32-58 (233)
487 cd03251 ABCC_MsbA MsbA is an e 93.6 0.018 3.8E-07 48.0 -0.3 27 29-55 25-51 (234)
488 PRK14021 bifunctional shikimat 93.6 0.016 3.6E-07 54.8 -0.5 29 33-61 7-38 (542)
489 cd03263 ABC_subfamily_A The AB 93.6 0.02 4.2E-07 47.3 -0.0 26 30-55 26-51 (220)
490 TIGR03771 anch_rpt_ABC anchore 93.6 0.024 5.2E-07 47.2 0.5 27 29-55 3-29 (223)
491 PRK10575 iron-hydroxamate tran 93.6 0.021 4.4E-07 48.8 0.1 27 29-55 34-60 (265)
492 PRK11248 tauB taurine transpor 93.6 0.018 3.9E-07 49.0 -0.3 27 29-55 24-50 (255)
493 PRK10771 thiQ thiamine transpo 93.6 0.021 4.5E-07 47.7 0.1 29 27-55 20-48 (232)
494 cd03232 ABC_PDR_domain2 The pl 93.6 0.019 4.2E-07 46.6 -0.1 28 29-56 30-57 (192)
495 PRK11264 putative amino-acid A 93.6 0.019 4.1E-07 48.4 -0.2 27 29-55 26-52 (250)
496 TIGR03864 PQQ_ABC_ATP ABC tran 93.6 0.018 4E-07 48.1 -0.3 27 29-55 24-50 (236)
497 PRK09862 putative ATP-dependen 93.6 0.025 5.5E-07 53.0 0.6 23 32-54 210-232 (506)
498 PRK00081 coaE dephospho-CoA ki 93.6 0.026 5.6E-07 46.1 0.6 27 33-59 3-31 (194)
499 PRK13540 cytochrome c biogenes 93.6 0.018 3.9E-07 47.0 -0.3 27 29-55 24-50 (200)
500 cd04139 RalA_RalB RalA/RalB su 93.6 0.022 4.7E-07 43.9 0.2 25 34-58 2-26 (164)
No 1
>KOG0726|consensus
Probab=99.97 E-value=1.4e-31 Score=226.95 Aligned_cols=157 Identities=90% Similarity=1.324 Sum_probs=148.3
Q ss_pred cchhhhhhcCCCCCCccccccccccCCCCccccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHH
Q psy7782 69 KDDKDKKKKYEPPIPTRVGKKKRKAKGPDAAIKLPQVTPHTKCRLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKNEEE 148 (225)
Q Consensus 69 ~~~f~~a~~~~p~iid~igk~r~~~~g~~~~~~l~~v~p~~~c~lr~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 148 (225)
+.--+...+++|.|...+|+++++.+|+++++++|++.|.+.|.+++.+++|++++|++|++|++++++++..+...++.
T Consensus 16 ~~dk~eK~~~~~~v~~r~gr~k~~~kGpdAa~klP~V~p~~~C~lrlLk~~RIkDyLLMEEEFI~NQe~~k~~e~~~ee~ 95 (440)
T KOG0726|consen 16 KDDKKEKKKYEPPVPTRVGRKKKKGKGPDAASKLPTVTPHTQCKLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKQEEE 95 (440)
T ss_pred ccccccccccCCCCcchhhhhhhcccCcchhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHH
Confidence 44445566788889999999988888999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHhhhcCCCceeeEEEEEecCCeEEEEccCCCeEEEeecCCCCcCCCCCCCeEEecCCcceeeeccCCCCCCCCC
Q psy7782 149 RSRVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVT 225 (225)
Q Consensus 149 ~~ev~~l~~~p~~vg~v~e~~d~~~~iV~~~~g~~~~v~v~~~vd~~~L~pG~~V~ln~~~~~Iv~vLp~~~D~~v~ 225 (225)
+..++.|++.|+.||+++|++||+++||.++.|++|||++.++||++.|+||+.|+||...++||++|.+++||+|+
T Consensus 96 r~~vd~lRGtPmsvg~leEiidd~haivst~~g~e~Yv~IlSfVdKdlLepgcsvll~~k~~avvGvL~d~~dpmv~ 172 (440)
T KOG0726|consen 96 RSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEYYVSILSFVDKDLLEPGCSVLLNHKVHAVVGVLQDDTDPMVS 172 (440)
T ss_pred HhHHHhhcCCccccccHHHHhcCCceEEecccCchheeeeeeeccHhhcCCCCeeeeccccceEEEEeccCCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999985
No 2
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.95 E-value=4.8e-27 Score=213.32 Aligned_cols=154 Identities=71% Similarity=1.106 Sum_probs=141.9
Q ss_pred hhhhhhcCCCCCC-ccccccccccCCCCccccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHH
Q psy7782 71 DKDKKKKYEPPIP-TRVGKKKRKAKGPDAAIKLPQVTPHTKCRLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKNEEER 149 (225)
Q Consensus 71 ~f~~a~~~~p~ii-d~igk~r~~~~g~~~~~~l~~v~p~~~c~lr~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 149 (225)
--+.-.+++|.+. ..+||+ ++.+|+++++++|.+.|.++|++++.+++++.++|.++.+++..+.++..+++++.+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (438)
T PTZ00361 16 KKKEKKKKESPPPPHEIKRK-KKRKGPDAASKLPKVTPNTKCRLRLLKLERIKDYLLLEEEFITNQEAQKPAQEKNEAEL 94 (438)
T ss_pred ccccccccCCCCCcchhhhh-ccccCCCccccCCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3345566778776 556644 44789999999999999999999999999999999999999999988888999999999
Q ss_pred HHHhhhcCCCceeeEEEEEecCCeEEEEccCCCeEEEeecCCCCcCCCCCCCeEEecCCcceeeeccCCCCCCCCC
Q psy7782 150 SRVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVT 225 (225)
Q Consensus 150 ~ev~~l~~~p~~vg~v~e~~d~~~~iV~~~~g~~~~v~v~~~vd~~~L~pG~~V~ln~~~~~Iv~vLp~~~D~~v~ 225 (225)
+++++++++|+.||+|+|++|++++||++++|++|||++.+++|+++|+||++|+||.++++||++||+++||+|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~ 170 (438)
T PTZ00361 95 KKVDDLRGSPLSVGTLEEIIDENHAIVSSSVGPEYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVS 170 (438)
T ss_pred HHHHHhhCCCcEEEEEEEEeCCCeEEEEeCCCCEEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccccchhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999873
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.7e-28 Score=210.20 Aligned_cols=90 Identities=44% Similarity=0.725 Sum_probs=80.5
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccccC---Ccee--------eccCCCC-CCcc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPALG---YHYY--------CRGAGSN-SDKK 69 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~~---~~~~--------~~~~~~~-~~~~ 69 (225)
||++++++|+|.|.+||++|++|.++|+.||+|+|||||||||||+||+++|+ +.|+ ..|.|+| .-+|
T Consensus 155 GL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVR 234 (406)
T COG1222 155 GLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVR 234 (406)
T ss_pred CHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHH
Confidence 89999999999999999999999999999999999999999999999985443 5555 5567778 5569
Q ss_pred chhhhhhcCCCCCC-----cccccccc
Q psy7782 70 DDKDKKKKYEPPIP-----TRVGKKKR 91 (225)
Q Consensus 70 ~~f~~a~~~~p~ii-----d~igk~r~ 91 (225)
++|..|+..+|||| |+||.+|-
T Consensus 235 elF~lArekaPsIIFiDEIDAIg~kR~ 261 (406)
T COG1222 235 ELFELAREKAPSIIFIDEIDAIGAKRF 261 (406)
T ss_pred HHHHHHhhcCCeEEEEechhhhhcccc
Confidence 99999999999998 99998886
No 4
>KOG0730|consensus
Probab=99.91 E-value=2e-25 Score=205.78 Aligned_cols=138 Identities=29% Similarity=0.519 Sum_probs=113.4
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCcee--------eccCCCC-CCcc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYY--------CRGAGSN-SDKK 69 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~--------~~~~~~~-~~~~ 69 (225)
||+++|.+|++.|.||+++|+.|.++|+.+|+|||||||||||||++|+ .+++++|+ ++++|++ ..+|
T Consensus 438 GlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir 517 (693)
T KOG0730|consen 438 GLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIR 517 (693)
T ss_pred CHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHH
Confidence 5999999999999999999999999999999999999999999999997 44556666 5578888 7889
Q ss_pred chhhhhhcCCCCCC-----ccccccccccCCCCccccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhh
Q psy7782 70 DDKDKKKKYEPPIP-----TRVGKKKRKAKGPDAAIKLPQVTPHTKCRLKLLKLERIKDYLLMEEEFIRNQERLKPQEEK 144 (225)
Q Consensus 70 ~~f~~a~~~~p~ii-----d~igk~r~~~~g~~~~~~l~~v~p~~~c~lr~~~le~~~~~l~~~~~~~~~~~~~~~~~~~ 144 (225)
++|++||+.+|||| |++++.|....+ .-.+|+...|+.|.+.....
T Consensus 518 ~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~--------------------~v~~RVlsqLLtEmDG~e~~--------- 568 (693)
T KOG0730|consen 518 EVFRKARQVAPCIIFFDEIDALAGSRGGSSS--------------------GVTDRVLSQLLTEMDGLEAL--------- 568 (693)
T ss_pred HHHHHHhhcCCeEEehhhHHhHhhccCCCcc--------------------chHHHHHHHHHHHccccccc---------
Confidence 99999999999998 888888862211 13457777777666644221
Q ss_pred HHHHHHHHhhhcCCCceeeEEEEEecCCeEEEEccCCCeEEEeecCCCCcCCCCCCC
Q psy7782 145 NEEERSRVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGC 201 (225)
Q Consensus 145 ~~~l~~ev~~l~~~p~~vg~v~e~~d~~~~iV~~~~g~~~~v~v~~~vd~~~L~pG~ 201 (225)
.+.+||.++|++ ..+|++.|+||.
T Consensus 569 --------------------------k~V~ViAATNRp-------d~ID~ALlRPGR 592 (693)
T KOG0730|consen 569 --------------------------KNVLVIAATNRP-------DMIDPALLRPGR 592 (693)
T ss_pred --------------------------CcEEEEeccCCh-------hhcCHHHcCCcc
Confidence 356888889998 789999999996
No 5
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=3.3e-23 Score=180.12 Aligned_cols=125 Identities=37% Similarity=0.509 Sum_probs=107.8
Q ss_pred cccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHhhhcCCCceeeEEEEEecCCeEEEEc
Q psy7782 99 AIKLPQVTPHTKCRLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKNEEERSRVDDLRGTPMSVGTLEEIIDDNHAIVST 178 (225)
Q Consensus 99 ~~~l~~v~p~~~c~lr~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ev~~l~~~p~~vg~v~e~~d~~~~iV~~ 178 (225)
.+..+.......|..+...++++.+++..+.+.... +...++++++.+++|++++++||++||+|+|++|++++||++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~e~~~l~~~pl~vg~v~e~id~~~~iVks 91 (406)
T COG1222 14 ESYEPQEYLNKLEDTKLKLLEKEKRLLLLEEQRLEA--EGLRLKREVDRLREEIERLKEPPLIVGTVLEVLDDGRAIVKS 91 (406)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhcchHHHHHHHHHHHHHhcCCCceEEEEEEEcCCceEEEEe
Confidence 334444555567888888888888777765544333 334677899999999999999999999999999999999999
Q ss_pred cCCCeEEEeecCCCCcCCCCCCCeEEecCCcceeeeccCCCCCCCCC
Q psy7782 179 SVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVT 225 (225)
Q Consensus 179 ~~g~~~~v~v~~~vd~~~L~pG~~V~ln~~~~~Iv~vLp~~~D~~v~ 225 (225)
++|++|+|++.++||+++|+||+||+||.++|+||.+||+++||+|+
T Consensus 92 ~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~ 138 (406)
T COG1222 92 STGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVS 138 (406)
T ss_pred CCCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhh
Confidence 99999999999999999999999999999999999999999999985
No 6
>KOG0733|consensus
Probab=99.89 E-value=8.8e-24 Score=193.41 Aligned_cols=139 Identities=22% Similarity=0.416 Sum_probs=112.8
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeec--------cCCCC-CCcc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCR--------GAGSN-SDKK 69 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~--------~~~~~-~~~~ 69 (225)
||++++.+|+..|.+|.++|+.|+.+|+.+|.|||||||||||||+||+ +++|.+|+++ |+|++ .++|
T Consensus 515 aL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR 594 (802)
T KOG0733|consen 515 ALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVR 594 (802)
T ss_pred cHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHH
Confidence 6899999999999999999999999999999999999999999999997 5667888854 66666 8889
Q ss_pred chhhhhhcCCCCCC-----ccccccccccCCCCccccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhh
Q psy7782 70 DDKDKKKKYEPPIP-----TRVGKKKRKAKGPDAAIKLPQVTPHTKCRLKLLKLERIKDYLLMEEEFIRNQERLKPQEEK 144 (225)
Q Consensus 70 ~~f~~a~~~~p~ii-----d~igk~r~~~~g~~~~~~l~~v~p~~~c~lr~~~le~~~~~l~~~~~~~~~~~~~~~~~~~ 144 (225)
.+|..||..+|||| |++.-+|... +.. --.|+.+.|+.|.+.....
T Consensus 595 ~vFqRAR~saPCVIFFDEiDaL~p~R~~~-~s~-------------------~s~RvvNqLLtElDGl~~R--------- 645 (802)
T KOG0733|consen 595 QVFQRARASAPCVIFFDEIDALVPRRSDE-GSS-------------------VSSRVVNQLLTELDGLEER--------- 645 (802)
T ss_pred HHHHHhhcCCCeEEEecchhhcCcccCCC-Cch-------------------hHHHHHHHHHHHhcccccc---------
Confidence 99999999999998 7776666521 111 2246666777666544211
Q ss_pred HHHHHHHHhhhcCCCceeeEEEEEecCCeEEEEccCCCeEEEeecCCCCcCCCCCCCe
Q psy7782 145 NEEERSRVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCS 202 (225)
Q Consensus 145 ~~~l~~ev~~l~~~p~~vg~v~e~~d~~~~iV~~~~g~~~~v~v~~~vd~~~L~pG~~ 202 (225)
.+.+||.+||++ ..||+.-|+||..
T Consensus 646 --------------------------~gV~viaATNRP-------DiIDpAiLRPGRl 670 (802)
T KOG0733|consen 646 --------------------------RGVYVIAATNRP-------DIIDPAILRPGRL 670 (802)
T ss_pred --------------------------cceEEEeecCCC-------cccchhhcCCCcc
Confidence 157889999999 7899999999963
No 7
>KOG0731|consensus
Probab=99.89 E-value=1.3e-23 Score=198.43 Aligned_cols=89 Identities=38% Similarity=0.611 Sum_probs=82.8
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC--------C-CCcc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS--------N-SDKK 69 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~--------~-~~~~ 69 (225)
|++++|++|.|+|.+ |++|+.|.++|...|+|+||+||||||||+||+ .++|.||+++++++ | +++|
T Consensus 315 G~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr 393 (774)
T KOG0731|consen 315 GVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVR 393 (774)
T ss_pred CcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHH
Confidence 899999999999999 999999999999999999999999999999997 56669999888777 5 7789
Q ss_pred chhhhhhcCCCCCC-----cccccccc
Q psy7782 70 DDKDKKKKYEPPIP-----TRVGKKKR 91 (225)
Q Consensus 70 ~~f~~a~~~~p~ii-----d~igk~r~ 91 (225)
++|..||.++|||| |++|++|.
T Consensus 394 ~lf~~ar~~aP~iifideida~~~~r~ 420 (774)
T KOG0731|consen 394 DLFPLARKNAPSIIFIDEIDAVGRKRG 420 (774)
T ss_pred HHHHHhhccCCeEEEeccccccccccc
Confidence 99999999999997 89999884
No 8
>KOG0736|consensus
Probab=99.88 E-value=1.2e-23 Score=196.50 Aligned_cols=141 Identities=23% Similarity=0.471 Sum_probs=110.7
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccc---ccCCcee--------eccCCCC-CCcc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSP---ALGYHYY--------CRGAGSN-SDKK 69 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~---~~~~~~~--------~~~~~~~-~~~~ 69 (225)
||+++|++|.+.+..||+||++|.. |+.+..|||||||||||||++|+| ++..+|+ +||+|++ .++|
T Consensus 676 GLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR 754 (953)
T KOG0736|consen 676 GLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVR 754 (953)
T ss_pred CHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHH
Confidence 8999999999999999999999986 889999999999999999999973 3344454 6677777 8899
Q ss_pred chhhhhhcCCCCCC-----ccccccccccCCCCccccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhh
Q psy7782 70 DDKDKKKKYEPPIP-----TRVGKKKRKAKGPDAAIKLPQVTPHTKCRLKLLKLERIKDYLLMEEEFIRNQERLKPQEEK 144 (225)
Q Consensus 70 ~~f~~a~~~~p~ii-----d~igk~r~~~~g~~~~~~l~~v~p~~~c~lr~~~le~~~~~l~~~~~~~~~~~~~~~~~~~ 144 (225)
++|++||..+|||| |.++-+|+..+++ .+- ++|+...|+.|.+..
T Consensus 755 ~VFerAR~A~PCVIFFDELDSlAP~RG~sGDS--GGV----------------MDRVVSQLLAELDgl------------ 804 (953)
T KOG0736|consen 755 EVFERARSAAPCVIFFDELDSLAPNRGRSGDS--GGV----------------MDRVVSQLLAELDGL------------ 804 (953)
T ss_pred HHHHHhhccCCeEEEeccccccCccCCCCCCc--ccc----------------HHHHHHHHHHHhhcc------------
Confidence 99999999999998 7888888743222 222 246666665444422
Q ss_pred HHHHHHHHhhhcCCCceeeEEEEEecCCeEEEEccCCCeEEEeecCCCCcCCCCCCC
Q psy7782 145 NEEERSRVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGC 201 (225)
Q Consensus 145 ~~~l~~ev~~l~~~p~~vg~v~e~~d~~~~iV~~~~g~~~~v~v~~~vd~~~L~pG~ 201 (225)
...+ .++.+||.++|++ .-+|++.|+||.
T Consensus 805 -----------s~~~----------s~~VFViGATNRP-------DLLDpALLRPGR 833 (953)
T KOG0736|consen 805 -----------SDSS----------SQDVFVIGATNRP-------DLLDPALLRPGR 833 (953)
T ss_pred -----------cCCC----------CCceEEEecCCCc-------cccChhhcCCCc
Confidence 1110 1357999999999 789999999996
No 9
>KOG0734|consensus
Probab=99.88 E-value=3.4e-23 Score=187.28 Aligned_cols=89 Identities=36% Similarity=0.550 Sum_probs=80.8
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccc---cCCceeeccCCC--------C-CCcc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPA---LGYHYYCRGAGS--------N-SDKK 69 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~---~~~~~~~~~~~~--------~-~~~~ 69 (225)
|+|+.|++|+|.+.+ |++|+.|.++|=.-|+||||.||||||||+||+++ +|.|||+..+++ | +++|
T Consensus 308 G~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVR 386 (752)
T KOG0734|consen 308 GVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVR 386 (752)
T ss_pred ChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHH
Confidence 899999999999999 99999999999999999999999999999999855 458888665544 7 8889
Q ss_pred chhhhhhcCCCCCC-----cccccccc
Q psy7782 70 DDKDKKKKYEPPIP-----TRVGKKKR 91 (225)
Q Consensus 70 ~~f~~a~~~~p~ii-----d~igk~r~ 91 (225)
++|..|++.||||| |++|.+|+
T Consensus 387 dLF~aAk~~APcIIFIDEiDavG~kR~ 413 (752)
T KOG0734|consen 387 DLFAAAKARAPCIIFIDEIDAVGGKRN 413 (752)
T ss_pred HHHHHHHhcCCeEEEEechhhhcccCC
Confidence 99999999999998 88998886
No 10
>KOG0727|consensus
Probab=99.87 E-value=2.7e-23 Score=173.84 Aligned_cols=90 Identities=43% Similarity=0.724 Sum_probs=80.0
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccccc-----------CCceeeccCCCC-CCcc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPAL-----------GYHYYCRGAGSN-SDKK 69 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~-----------~~~~~~~~~~~~-~~~~ 69 (225)
||+-+|+++++.+.+||.+.++|+..|+.||+|+|||||||||||+||++++ |+.|+..+.|+| .-+|
T Consensus 159 gld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvr 238 (408)
T KOG0727|consen 159 GLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVR 238 (408)
T ss_pred cchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHH
Confidence 7899999999999999999999999999999999999999999999997444 456667777888 7779
Q ss_pred chhhhhhcCCCCCC-----cccccccc
Q psy7782 70 DDKDKKKKYEPPIP-----TRVGKKKR 91 (225)
Q Consensus 70 ~~f~~a~~~~p~ii-----d~igk~r~ 91 (225)
++|..|++++|+|| |+|+.+|=
T Consensus 239 dvfrlakenapsiifideidaiatkrf 265 (408)
T KOG0727|consen 239 DVFRLAKENAPSIIFIDEIDAIATKRF 265 (408)
T ss_pred HHHHHHhccCCcEEEeehhhhHhhhhc
Confidence 99999999999997 77776663
No 11
>KOG0726|consensus
Probab=99.85 E-value=5.3e-22 Score=168.81 Aligned_cols=90 Identities=52% Similarity=0.770 Sum_probs=81.6
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccccC-----------CceeeccCCCC-CCcc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPALG-----------YHYYCRGAGSN-SDKK 69 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~~-----------~~~~~~~~~~~-~~~~ 69 (225)
|++.++++|++.+.+||.||+.|.++|+.||+|++|||+||||||+||+++++ +.++..+.|+| .-+|
T Consensus 189 Gle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvR 268 (440)
T KOG0726|consen 189 GLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVR 268 (440)
T ss_pred cHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHH
Confidence 79999999999999999999999999999999999999999999999987666 44456677888 7779
Q ss_pred chhhhhhcCCCCCC-----cccccccc
Q psy7782 70 DDKDKKKKYEPPIP-----TRVGKKKR 91 (225)
Q Consensus 70 ~~f~~a~~~~p~ii-----d~igk~r~ 91 (225)
++|+.|..+||+|+ |+||-+|=
T Consensus 269 qlF~vA~e~apSIvFiDEIdAiGtKRy 295 (440)
T KOG0726|consen 269 ELFRVAEEHAPSIVFIDEIDAIGTKRY 295 (440)
T ss_pred HHHHHHHhcCCceEEeehhhhhccccc
Confidence 99999999999996 88898875
No 12
>KOG0733|consensus
Probab=99.85 E-value=7.3e-22 Score=180.93 Aligned_cols=89 Identities=31% Similarity=0.568 Sum_probs=80.0
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccc---ccCCceeeccCCC------C---CCcc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSP---ALGYHYYCRGAGS------N---SDKK 69 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~---~~~~~~~~~~~~~------~---~~~~ 69 (225)
||++...+|.+.+.. +++|+.|..+|+.||+|+|||||||||||+||++ ++|.||+++++.+ | .++|
T Consensus 194 G~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiR 272 (802)
T KOG0733|consen 194 GLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIR 272 (802)
T ss_pred ChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHH
Confidence 899999999999999 9999999999999999999999999999999975 4559999887665 3 5569
Q ss_pred chhhhhhcCCCCCC-----cccccccc
Q psy7782 70 DDKDKKKKYEPPIP-----TRVGKKKR 91 (225)
Q Consensus 70 ~~f~~a~~~~p~ii-----d~igk~r~ 91 (225)
++|+.|+.++|||+ |+|+-+|.
T Consensus 273 elF~~A~~~aPcivFiDeIDAI~pkRe 299 (802)
T KOG0733|consen 273 ELFDQAKSNAPCIVFIDEIDAITPKRE 299 (802)
T ss_pred HHHHHHhccCCeEEEeecccccccchh
Confidence 99999999999996 88887775
No 13
>KOG0728|consensus
Probab=99.84 E-value=1.6e-21 Score=163.19 Aligned_cols=91 Identities=40% Similarity=0.652 Sum_probs=79.1
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccccc---CCceeec--------cCCCC-CCcc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPAL---GYHYYCR--------GAGSN-SDKK 69 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~---~~~~~~~--------~~~~~-~~~~ 69 (225)
||+.++++|++.+.+|.+||++|..+|+..|+|+|||||||||||++|++++ .+.|+.+ +.|+| .-+|
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvr 230 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVR 230 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHH
Confidence 7999999999999999999999999999999999999999999999997433 3555544 55557 4459
Q ss_pred chhhhhhcCCCCCC-----ccccccccc
Q psy7782 70 DDKDKKKKYEPPIP-----TRVGKKKRK 92 (225)
Q Consensus 70 ~~f~~a~~~~p~ii-----d~igk~r~~ 92 (225)
++|-.||++||+|| |.||..|..
T Consensus 231 elfvmarehapsiifmdeidsigs~r~e 258 (404)
T KOG0728|consen 231 ELFVMAREHAPSIIFMDEIDSIGSSRVE 258 (404)
T ss_pred HHHHHHHhcCCceEeeeccccccccccc
Confidence 99999999999998 888988874
No 14
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.4e-21 Score=179.88 Aligned_cols=90 Identities=37% Similarity=0.625 Sum_probs=80.0
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccc---cCCceeeccC--------CCC-CCcc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPA---LGYHYYCRGA--------GSN-SDKK 69 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~---~~~~~~~~~~--------~~~-~~~~ 69 (225)
|.+++|+++.+.|.+ |++|..|..+|...|+|+||+||||||||++|+++ ++.|||++++ |.| +.+|
T Consensus 154 G~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVR 232 (596)
T COG0465 154 GVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVR 232 (596)
T ss_pred CcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHH
Confidence 789999999999999 99999999999999999999999999999999844 4466665554 447 8889
Q ss_pred chhhhhhcCCCCCC-----ccccccccc
Q psy7782 70 DDKDKKKKYEPPIP-----TRVGKKKRK 92 (225)
Q Consensus 70 ~~f~~a~~~~p~ii-----d~igk~r~~ 92 (225)
++|.+|+++||||| |++||.|+.
T Consensus 233 dLF~qAkk~aP~IIFIDEiDAvGr~Rg~ 260 (596)
T COG0465 233 DLFEQAKKNAPCIIFIDEIDAVGRQRGA 260 (596)
T ss_pred HHHHHhhccCCCeEEEehhhhcccccCC
Confidence 99999999999997 999999973
No 15
>KOG0652|consensus
Probab=99.83 E-value=2e-21 Score=163.39 Aligned_cols=90 Identities=42% Similarity=0.658 Sum_probs=83.7
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc-----------cccCCceeeccCCCC-CCcc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS-----------PALGYHYYCRGAGSN-SDKK 69 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~-----------~~~~~~~~~~~~~~~-~~~~ 69 (225)
|++.++++|.+.+.+|+.|++.|..+|+.||+|+|+|||||||||++|+ ..+|..++.|+.|+| .-+|
T Consensus 175 GldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVR 254 (424)
T KOG0652|consen 175 GLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVR 254 (424)
T ss_pred cHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHH
Confidence 8999999999999999999999999999999999999999999999996 456677789999999 6679
Q ss_pred chhhhhhcCCCCCC-----cccccccc
Q psy7782 70 DDKDKKKKYEPPIP-----TRVGKKKR 91 (225)
Q Consensus 70 ~~f~~a~~~~p~ii-----d~igk~r~ 91 (225)
+.|..|++.+|||| |+||.+|-
T Consensus 255 DAFaLAKEkaP~IIFIDElDAIGtKRf 281 (424)
T KOG0652|consen 255 DAFALAKEKAPTIIFIDELDAIGTKRF 281 (424)
T ss_pred HHHHHhhccCCeEEEEechhhhccccc
Confidence 99999999999998 89998875
No 16
>KOG0727|consensus
Probab=99.82 E-value=1.6e-20 Score=157.30 Aligned_cols=115 Identities=30% Similarity=0.542 Sum_probs=107.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHhhhcCCCceeeEEEEEecCCeEEEEccCCCeEEEee
Q psy7782 109 TKCRLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKNEEERSRVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSI 188 (225)
Q Consensus 109 ~~c~lr~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ev~~l~~~p~~vg~v~e~~d~~~~iV~~~~g~~~~v~v 188 (225)
..-+.+..++|+..+++.+++++++.+.+ .+++|....++|++++++.|+.+|+|+|.+|.+++||.+++|..|||.+
T Consensus 28 ~dly~r~k~le~~le~l~vqe~yik~e~~--~lkre~~~aqeevkriqsvplvigqfle~vdqnt~ivgsttgsny~vri 105 (408)
T KOG0727|consen 28 EDLYVRYKKLERELELLEVQEDYIKDEQR--NLKRELLHAQEEVKRIQSVPLVIGQFLEAVDQNTAIVGSTTGSNYYVRI 105 (408)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccchHHHHHHHhhhccCceeecccCCceEEee
Confidence 36677888999999999999999877654 6888999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCCCCCCCeEEecCCcceeeeccCCCCCCCCC
Q psy7782 189 LSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVT 225 (225)
Q Consensus 189 ~~~vd~~~L~pG~~V~ln~~~~~Iv~vLp~~~D~~v~ 225 (225)
.+.+|++.|||+++|+||+++.++|++||++.|++++
T Consensus 106 lstidrellkps~svalhrhsnalvdvlppeadssi~ 142 (408)
T KOG0727|consen 106 LSTIDRELLKPSASVALHRHSNALVDVLPPEADSSIS 142 (408)
T ss_pred hhhhhHHHcCCccchhhhhcccceeeccCCccccccc
Confidence 9999999999999999999999999999999999875
No 17
>KOG0735|consensus
Probab=99.80 E-value=5e-20 Score=171.20 Aligned_cols=139 Identities=24% Similarity=0.377 Sum_probs=110.2
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC--------C-CCcc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS--------N-SDKK 69 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~--------~-~~~~ 69 (225)
||.++++.|++.+.||-++|.+|...+++.+.|||||||||||||++|. +.++..|+++.+.+ + .++|
T Consensus 671 g~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR 750 (952)
T KOG0735|consen 671 GLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVR 750 (952)
T ss_pred cHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHH
Confidence 8999999999999999999999999999999999999999999999996 55667888776655 3 6679
Q ss_pred chhhhhhcCCCCCC-----ccccccccccCCCCccccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhh
Q psy7782 70 DDKDKKKKYEPPIP-----TRVGKKKRKAKGPDAAIKLPQVTPHTKCRLKLLKLERIKDYLLMEEEFIRNQERLKPQEEK 144 (225)
Q Consensus 70 ~~f~~a~~~~p~ii-----d~igk~r~~~~g~~~~~~l~~v~p~~~c~lr~~~le~~~~~l~~~~~~~~~~~~~~~~~~~ 144 (225)
++|+.|+..+|||+ |.++-+|+ .++ +- -.+|+.+.++.+.+..
T Consensus 751 ~lF~rA~~a~PCiLFFDEfdSiAPkRG----hDs--TG--------------VTDRVVNQlLTelDG~------------ 798 (952)
T KOG0735|consen 751 DLFERAQSAKPCILFFDEFDSIAPKRG----HDS--TG--------------VTDRVVNQLLTELDGA------------ 798 (952)
T ss_pred HHHHHhhccCCeEEEeccccccCcccC----CCC--CC--------------chHHHHHHHHHhhccc------------
Confidence 99999999999998 67777764 222 11 2346666555444422
Q ss_pred HHHHHHHHhhhcCCCceeeEEEEEecCCeEEEEccCCCeEEEeecCCCCcCCCCCCCe
Q psy7782 145 NEEERSRVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCS 202 (225)
Q Consensus 145 ~~~l~~ev~~l~~~p~~vg~v~e~~d~~~~iV~~~~g~~~~v~v~~~vd~~~L~pG~~ 202 (225)
|-+ +|.+|+.+++++ ..+|++.|+||..
T Consensus 799 ----------------------Egl-~GV~i~aaTsRp-------dliDpALLRpGRl 826 (952)
T KOG0735|consen 799 ----------------------EGL-DGVYILAATSRP-------DLIDPALLRPGRL 826 (952)
T ss_pred ----------------------ccc-ceEEEEEecCCc-------cccCHhhcCCCcc
Confidence 111 367888888888 7799999999963
No 18
>KOG0739|consensus
Probab=99.79 E-value=2.2e-20 Score=159.38 Aligned_cols=99 Identities=23% Similarity=0.455 Sum_probs=84.1
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC------C---CCcc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS------N---SDKK 69 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~------~---~~~~ 69 (225)
||+..|++|++.|++|+++|++|... ..|++||||||||||||+.||+ .+++..||+++.++ | .-++
T Consensus 137 GLE~AKeALKEAVILPIKFPqlFtGk-R~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVk 215 (439)
T KOG0739|consen 137 GLEGAKEALKEAVILPIKFPQLFTGK-RKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVK 215 (439)
T ss_pred cchhHHHHHHhheeecccchhhhcCC-CCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHH
Confidence 89999999999999999999999974 5789999999999999999997 67889999998887 4 3358
Q ss_pred chhhhhhcCCCCCC-----ccccccccccCCCCccccC
Q psy7782 70 DDKDKKKKYEPPIP-----TRVGKKKRKAKGPDAAIKL 102 (225)
Q Consensus 70 ~~f~~a~~~~p~ii-----d~igk~r~~~~g~~~~~~l 102 (225)
++|+.||++.|+|| |.++.+|. .++++++.++
T Consensus 216 nLFemARe~kPSIIFiDEiDslcg~r~-enEseasRRI 252 (439)
T KOG0739|consen 216 NLFEMARENKPSIIFIDEIDSLCGSRS-ENESEASRRI 252 (439)
T ss_pred HHHHHHHhcCCcEEEeehhhhhccCCC-CCchHHHHHH
Confidence 99999999999998 66666665 3555555553
No 19
>KOG0738|consensus
Probab=99.76 E-value=1.3e-19 Score=159.07 Aligned_cols=99 Identities=25% Similarity=0.421 Sum_probs=84.9
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC------C---CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS------N---SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~------~---~~~ 68 (225)
.||.++|+.|+|.|.+|+..|+.|+.+ ..|++|+|++||||||||+||+ .++|..||.++.+. | +-+
T Consensus 215 agl~~AK~lL~EAVvlPi~mPe~F~Gi-rrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlv 293 (491)
T KOG0738|consen 215 AGLHEAKKLLKEAVVLPIWMPEFFKGI-RRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLV 293 (491)
T ss_pred cchHHHHHHHHHHHhhhhhhHHHHhhc-ccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHH
Confidence 489999999999999999999999985 5899999999999999999997 77899999888776 3 334
Q ss_pred cchhhhhhcCCCCCC-----ccccccccccCCCCccc
Q psy7782 69 KDDKDKKKKYEPPIP-----TRVGKKKRKAKGPDAAI 100 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii-----d~igk~r~~~~g~~~~~ 100 (225)
|=+|+.||.+||++| |+++.+|+...+.+++.
T Consensus 294 RlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSR 330 (491)
T KOG0738|consen 294 RLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASR 330 (491)
T ss_pred HHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHH
Confidence 899999999999997 77788887554444433
No 20
>KOG0651|consensus
Probab=99.74 E-value=7.9e-19 Score=150.41 Aligned_cols=89 Identities=39% Similarity=0.675 Sum_probs=79.7
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC--------C-CCcc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS--------N-SDKK 69 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~--------~-~~~~ 69 (225)
|+.++..++.+.+..|+.+|++|.+.|+.+|+|++||||||||||++|+ +-+|++|+-+..|. . .-+|
T Consensus 136 gl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIR 215 (388)
T KOG0651|consen 136 GLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIR 215 (388)
T ss_pred ChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHH
Confidence 7889999999999999999999999999999999999999999999997 66788888776655 3 4459
Q ss_pred chhhhhhcCCCCCC-----ccccccc
Q psy7782 70 DDKDKKKKYEPPIP-----TRVGKKK 90 (225)
Q Consensus 70 ~~f~~a~~~~p~ii-----d~igk~r 90 (225)
+.|..|+...|||| |++|-|+
T Consensus 216 emf~yA~~~~pciifmdeiDAigGRr 241 (388)
T KOG0651|consen 216 DMFRYAREVIPCIIFMDEIDAIGGRR 241 (388)
T ss_pred HHHHHHhhhCceEEeehhhhhhccEE
Confidence 99999999999997 8887776
No 21
>KOG0729|consensus
Probab=99.73 E-value=7.5e-19 Score=148.28 Aligned_cols=90 Identities=36% Similarity=0.594 Sum_probs=78.8
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccccC---Ccee--------eccCCCC-CCcc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPALG---YHYY--------CRGAGSN-SDKK 69 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~~---~~~~--------~~~~~~~-~~~~ 69 (225)
|..++++.|++.+..||.+|+.|..+|+.||+|+|||||||||||+.|+++++ +.|+ ..|+|+| .-+|
T Consensus 181 gckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvr 260 (435)
T KOG0729|consen 181 GCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVR 260 (435)
T ss_pred chHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHH
Confidence 67899999999999999999999999999999999999999999999986655 3444 5577778 5569
Q ss_pred chhhhhhcCCCCCC-----cccccccc
Q psy7782 70 DDKDKKKKYEPPIP-----TRVGKKKR 91 (225)
Q Consensus 70 ~~f~~a~~~~p~ii-----d~igk~r~ 91 (225)
++|+.||...-||| |+||-.|=
T Consensus 261 elf~martkkaciiffdeidaiggarf 287 (435)
T KOG0729|consen 261 ELFEMARTKKACIIFFDEIDAIGGARF 287 (435)
T ss_pred HHHHHhcccceEEEEeeccccccCccc
Confidence 99999999999998 88887664
No 22
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.73 E-value=3.7e-17 Score=147.57 Aligned_cols=103 Identities=30% Similarity=0.484 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhHHHHHHHHhhhcCCCceeeEEEEEecCCeEEEEccCCCeEEEeecCCCCcCCCCCCC
Q psy7782 122 KDYLLMEEEFIRNQERLKPQEEKNEEERSRVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGC 201 (225)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ev~~l~~~p~~vg~v~e~~d~~~~iV~~~~g~~~~v~v~~~vd~~~L~pG~ 201 (225)
.+...++.++..+..+++++++++++++++++++++||+.+|+|+|++|++++||++++|++|+|++.+.+|++.|+||+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (398)
T PTZ00454 29 KELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSVPLVIGQFLEMIDSNYGIVSSTSGSNYYVRILSTLNRELLKPNA 108 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEcCCEEEEEcCCCCEEEEecccccCHhhCCCCC
Confidence 34455566666677777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCcceeeeccCCCCCCCC
Q psy7782 202 SVLLNHKVHAVVGVLSDDTDPMV 224 (225)
Q Consensus 202 ~V~ln~~~~~Iv~vLp~~~D~~v 224 (225)
+|++|.++++++.+||++.||+|
T Consensus 109 ~v~~~~~~~~~~~~l~~~~~~~~ 131 (398)
T PTZ00454 109 SVALHRHSHAVVDILPPEADSSI 131 (398)
T ss_pred EEEeeccchhHHHhccccccchh
Confidence 99999999999999999999976
No 23
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=4.7e-18 Score=157.53 Aligned_cols=90 Identities=33% Similarity=0.654 Sum_probs=79.1
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccc---cCCceeeccCCC--------C-CCcc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPA---LGYHYYCRGAGS--------N-SDKK 69 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~---~~~~~~~~~~~~--------~-~~~~ 69 (225)
||+++++.+++.+.+|+.+++.|...++.+++|+|||||||||||++|+++ ++.+|+++..++ . ++++
T Consensus 246 gl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir 325 (494)
T COG0464 246 GLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIR 325 (494)
T ss_pred cHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHH
Confidence 799999999999999999999999999999999999999999999999844 458888665544 3 6679
Q ss_pred chhhhhhcCCCCCC-----cccccccc
Q psy7782 70 DDKDKKKKYEPPIP-----TRVGKKKR 91 (225)
Q Consensus 70 ~~f~~a~~~~p~ii-----d~igk~r~ 91 (225)
++|..|++.+|||| |.+...|.
T Consensus 326 ~~F~~A~~~~p~iiFiDEiDs~~~~r~ 352 (494)
T COG0464 326 ELFEKARKLAPSIIFIDEIDSLASGRG 352 (494)
T ss_pred HHHHHHHcCCCcEEEEEchhhhhccCC
Confidence 99999999999998 77777665
No 24
>KOG0737|consensus
Probab=99.67 E-value=2.6e-18 Score=150.11 Aligned_cols=100 Identities=29% Similarity=0.524 Sum_probs=81.8
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcC-CCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC------C---CCc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMG-IKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS------N---SDK 68 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g-~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~------~---~~~ 68 (225)
||+++++++++.|.+|+++|++|...+ +.+++|||||||||||||++|+ .++|.+|+++.++. | +-+
T Consensus 96 gLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv 175 (386)
T KOG0737|consen 96 GLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLV 175 (386)
T ss_pred chHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHH
Confidence 799999999999999999999997544 5689999999999999999997 67889999998886 3 345
Q ss_pred cchhhhhhcCCCCCC-----ccc-cccccccCCCCccccCC
Q psy7782 69 KDDKDKKKKYEPPIP-----TRV-GKKKRKAKGPDAAIKLP 103 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii-----d~i-gk~r~~~~g~~~~~~l~ 103 (225)
+.+|..|.+.+|||| |.+ |.| ...+.++..++.
T Consensus 176 ~AvFslAsKl~P~iIFIDEvds~L~~R--~s~dHEa~a~mK 214 (386)
T KOG0737|consen 176 KAVFSLASKLQPSIIFIDEVDSFLGQR--RSTDHEATAMMK 214 (386)
T ss_pred HHHHhhhhhcCcceeehhhHHHHHhhc--ccchHHHHHHHH
Confidence 899999999999998 333 444 245555555543
No 25
>KOG0728|consensus
Probab=99.65 E-value=2.4e-16 Score=132.24 Aligned_cols=113 Identities=19% Similarity=0.262 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHhhhchhhhhHHHHHHHHhhhcCCCceeeEEEEEecCCeEEEEccCCCeEEEee
Q psy7782 113 LKLLKLERIKDYLLMEEEFI----RNQERLKPQEEKNEEERSRVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSI 188 (225)
Q Consensus 113 lr~~~le~~~~~l~~~~~~~----~~~~~~~~~~~~~~~l~~ev~~l~~~p~~vg~v~e~~d~~~~iV~~~~g~~~~v~v 188 (225)
++.++.+++.+....-.+.. +++.+.++++.++.-+++|++.|+.|+.+||+|++.+++++++|+.....+|+|.+
T Consensus 18 ~~~y~~~ki~~~~~~v~~kt~nlrrleaqrneln~kvr~lreel~~lqe~gsyvgev~k~m~k~kVLVKvhpegKyvvdv 97 (404)
T KOG0728|consen 18 LRQYYLQKIEELQLQVAEKTQNLRRLEAQRNELNAKVRLLREELQLLQEPGSYVGEVVKAMGKKKVLVKVHPEGKYVVDV 97 (404)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCcchHHHHHHhcCcceEEEEEcCCCcEEEec
Confidence 78888899888765555443 34555567777888899999999999999999999999999999999999999999
Q ss_pred cCCCCcCCCCCCCeEEecCCcceeeeccCCCCCCCCC
Q psy7782 189 LSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVT 225 (225)
Q Consensus 189 ~~~vd~~~L~pG~~V~ln~~~~~Iv~vLp~~~D~~v~ 225 (225)
++.+|..+++||.||+|.+++|++.++||+.+||+||
T Consensus 98 ~k~i~i~~~~~~~rVaLR~dsY~lhkiLpnKvDpLVs 134 (404)
T KOG0728|consen 98 DKNIDISDVTPSSRVALRNDSYTLHKILPNKVDPLVS 134 (404)
T ss_pred cCCCcHhhcCCcceEEEeccchHHHHhcccccchhhH
Confidence 9999999999999999999999999999999999986
No 26
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.65 E-value=2.1e-17 Score=138.93 Aligned_cols=87 Identities=25% Similarity=0.433 Sum_probs=73.8
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccc---cCCceeeccC--------CCC-CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPA---LGYHYYCRGA--------GSN-SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~---~~~~~~~~~~--------~~~-~~~ 68 (225)
||.++.|..-.-.+.+ |.+|+.|..| .|+.+|||||||||||++|++. +..||+.+.+ |+| ..+
T Consensus 124 iGqEeAK~kcrli~~y-LenPe~Fg~W---APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~I 199 (368)
T COG1223 124 IGQEEAKRKCRLIMEY-LENPERFGDW---APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRI 199 (368)
T ss_pred hchHHHHHHHHHHHHH-hhChHHhccc---CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHH
Confidence 6889999887777777 9999999886 6899999999999999999854 5589988864 445 667
Q ss_pred cchhhhhhcCCCCCC-----cccccccc
Q psy7782 69 KDDKDKKKKYEPPIP-----TRVGKKKR 91 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii-----d~igk~r~ 91 (225)
+++|+.|++.||||+ |+||-.|+
T Consensus 200 hely~rA~~~aPcivFiDE~DAiaLdRr 227 (368)
T COG1223 200 HELYERARKAAPCIVFIDELDAIALDRR 227 (368)
T ss_pred HHHHHHHHhcCCeEEEehhhhhhhhhhh
Confidence 999999999999997 88887765
No 27
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.65 E-value=1.4e-16 Score=154.19 Aligned_cols=91 Identities=38% Similarity=0.684 Sum_probs=78.5
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccC--------CCC-CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGA--------GSN-SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~--------~~~-~~~ 68 (225)
.|++++++.|.+.+.+|+++++.|..+|+.+++|+|||||||||||++|+ .+++.+|+.+.. |++ ..+
T Consensus 456 ~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i 535 (733)
T TIGR01243 456 GGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAI 535 (733)
T ss_pred ccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHH
Confidence 48999999999999999999999999999999999999999999999997 455788886654 444 567
Q ss_pred cchhhhhhcCCCCCC-----cccccccc
Q psy7782 69 KDDKDKKKKYEPPIP-----TRVGKKKR 91 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii-----d~igk~r~ 91 (225)
+++|..|++.+|||| |.++.+|+
T Consensus 536 ~~~f~~A~~~~p~iifiDEid~l~~~r~ 563 (733)
T TIGR01243 536 REIFRKARQAAPAIIFFDEIDAIAPARG 563 (733)
T ss_pred HHHHHHHHhcCCEEEEEEChhhhhccCC
Confidence 999999999999997 56665553
No 28
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.62 E-value=6.6e-17 Score=145.92 Aligned_cols=90 Identities=42% Similarity=0.689 Sum_probs=76.5
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccc---cCCceeecc--------CCCC-CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPA---LGYHYYCRG--------AGSN-SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~---~~~~~~~~~--------~~~~-~~~ 68 (225)
.|++.++++|++.+.+|+.+|+.|..+|+.+++|+|||||||||||++|++. .+.+|+.+. .|++ ..+
T Consensus 148 gGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~l 227 (398)
T PTZ00454 148 GGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMV 227 (398)
T ss_pred CCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHH
Confidence 4899999999999999999999999999999999999999999999999744 456666554 3444 456
Q ss_pred cchhhhhhcCCCCCC-----ccccccc
Q psy7782 69 KDDKDKKKKYEPPIP-----TRVGKKK 90 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii-----d~igk~r 90 (225)
+++|..|+..+|||+ |.++.+|
T Consensus 228 r~lf~~A~~~~P~ILfIDEID~i~~~r 254 (398)
T PTZ00454 228 RDVFRLARENAPSIIFIDEVDSIATKR 254 (398)
T ss_pred HHHHHHHHhcCCeEEEEECHhhhcccc
Confidence 899999999999997 6666554
No 29
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.60 E-value=4.7e-16 Score=143.68 Aligned_cols=90 Identities=37% Similarity=0.644 Sum_probs=71.2
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccccC-------------Cceeecc-------
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPALG-------------YHYYCRG------- 61 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~~-------------~~~~~~~------- 61 (225)
|++++++.+++.+.+|+.+|++|..+|+.+++|+|||||||||||++|+++++ ..|+.+.
T Consensus 186 Gl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~k 265 (512)
T TIGR03689 186 GLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNK 265 (512)
T ss_pred ChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhccc
Confidence 79999999999999999999999999999999999999999999999974433 2233332
Q ss_pred -CCCC-CCccchhhhhhcC----CCCCC-----cccccccc
Q psy7782 62 -AGSN-SDKKDDKDKKKKY----EPPIP-----TRVGKKKR 91 (225)
Q Consensus 62 -~~~~-~~~~~~f~~a~~~----~p~ii-----d~igk~r~ 91 (225)
.|++ ..++.+|+.|+.. .|||| |.+.++|.
T Consensus 266 yvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~ 306 (512)
T TIGR03689 266 YVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRG 306 (512)
T ss_pred ccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccC
Confidence 2333 4457899988875 69997 66665553
No 30
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.57 E-value=1.5e-15 Score=140.88 Aligned_cols=90 Identities=34% Similarity=0.583 Sum_probs=77.1
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC--------C-CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS--------N-SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~--------~-~~~ 68 (225)
+|++++++++.+.+.+ +++++.|..+|..+++|+|||||||||||++|+ ..++.+|+.++.++ + +.+
T Consensus 58 ~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l 136 (495)
T TIGR01241 58 AGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRV 136 (495)
T ss_pred CCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHH
Confidence 4899999999999887 999999999999999999999999999999997 45668888776543 3 567
Q ss_pred cchhhhhhcCCCCCC-----cccccccc
Q psy7782 69 KDDKDKKKKYEPPIP-----TRVGKKKR 91 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii-----d~igk~r~ 91 (225)
+++|+.|+.++|||+ |.++.++.
T Consensus 137 ~~~f~~a~~~~p~Il~iDEid~l~~~r~ 164 (495)
T TIGR01241 137 RDLFEQAKKNAPCIIFIDEIDAVGRQRG 164 (495)
T ss_pred HHHHHHHHhcCCCEEEEechhhhhhccc
Confidence 899999999999997 66666553
No 31
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.56 E-value=1e-15 Score=138.06 Aligned_cols=91 Identities=38% Similarity=0.649 Sum_probs=77.4
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccc---ccCCceeeccCCC--------C-CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSP---ALGYHYYCRGAGS--------N-SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~---~~~~~~~~~~~~~--------~-~~~ 68 (225)
.|+++++++|.+.+.+|+.+|+.|..+|+.+++|+|||||||||||++|++ .++.+|+.+..++ + ..+
T Consensus 134 ~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i 213 (389)
T PRK03992 134 GGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLV 213 (389)
T ss_pred CCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHH
Confidence 389999999999999999999999999999999999999999999999974 4467787765544 3 445
Q ss_pred cchhhhhhcCCCCCC-----cccccccc
Q psy7782 69 KDDKDKKKKYEPPIP-----TRVGKKKR 91 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii-----d~igk~r~ 91 (225)
+.+|+.|+..+|||| |.++.+|.
T Consensus 214 ~~~f~~a~~~~p~IlfiDEiD~l~~~r~ 241 (389)
T PRK03992 214 RELFELAREKAPSIIFIDEIDAIAAKRT 241 (389)
T ss_pred HHHHHHHHhcCCeEEEEechhhhhcccc
Confidence 789999999999986 66665543
No 32
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.56 E-value=8.2e-16 Score=140.05 Aligned_cols=89 Identities=47% Similarity=0.756 Sum_probs=75.7
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccccc---CCceeeccCCC--------C-CCcc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPAL---GYHYYCRGAGS--------N-SDKK 69 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~---~~~~~~~~~~~--------~-~~~~ 69 (225)
|+++++++|.+.+.+|+.+|++|..+|+.+++|+|||||||||||++|++++ +.+|+.+..++ + ..++
T Consensus 187 Gl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr 266 (438)
T PTZ00361 187 GLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVR 266 (438)
T ss_pred CHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHH
Confidence 8999999999999999999999999999999999999999999999998544 46677665443 3 3468
Q ss_pred chhhhhhcCCCCCC-----ccccccc
Q psy7782 70 DDKDKKKKYEPPIP-----TRVGKKK 90 (225)
Q Consensus 70 ~~f~~a~~~~p~ii-----d~igk~r 90 (225)
++|..|+..+|||+ |.++.+|
T Consensus 267 ~lF~~A~~~~P~ILfIDEID~l~~kR 292 (438)
T PTZ00361 267 ELFRVAEENAPSIVFIDEIDAIGTKR 292 (438)
T ss_pred HHHHHHHhCCCcEEeHHHHHHHhccC
Confidence 99999999999997 6666554
No 33
>KOG0732|consensus
Probab=99.54 E-value=3.4e-15 Score=145.16 Aligned_cols=86 Identities=33% Similarity=0.570 Sum_probs=74.9
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccccC----------------CceeeccCCCC
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPALG----------------YHYYCRGAGSN 65 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~~----------------~~~~~~~~~~~ 65 (225)
||++++..|++.|..||.+|+.|..+++.||+|+|||||||||||+.|++.++ ...++.++|+.
T Consensus 269 gl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEa 348 (1080)
T KOG0732|consen 269 GLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEA 348 (1080)
T ss_pred cHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcH
Confidence 79999999999999999999999999999999999999999999999874433 44556666665
Q ss_pred -CCccchhhhhhcCCCCCC--cccc
Q psy7782 66 -SDKKDDKDKKKKYEPPIP--TRVG 87 (225)
Q Consensus 66 -~~~~~~f~~a~~~~p~ii--d~ig 87 (225)
...|-+|+.|++..|+|| |.|.
T Consensus 349 ERqlrllFeeA~k~qPSIIffdeId 373 (1080)
T KOG0732|consen 349 ERQLRLLFEEAQKTQPSIIFFDEID 373 (1080)
T ss_pred HHHHHHHHHHHhccCceEEeccccc
Confidence 556899999999999999 6663
No 34
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.50 E-value=1.2e-13 Score=127.89 Aligned_cols=94 Identities=28% Similarity=0.330 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhhhchhhhhHHHHHHHHhhhcCCCceeeEEEEE-ecCCeEEEEccCCCeEEEeecCCCCcCCCCCCCeE
Q psy7782 125 LLMEEEFIRNQERLKPQEEKNEEERSRVDDLRGTPMSVGTLEEI-IDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSV 203 (225)
Q Consensus 125 l~~~~~~~~~~~~~~~~~~~~~~l~~ev~~l~~~p~~vg~v~e~-~d~~~~iV~~~~g~~~~v~v~~~vd~~~L~pG~~V 203 (225)
..+..++.++...++++++++..+++++++|.+||+++||+++. .+++.+.| .++|++|+|.++|.||.+.|+||++|
T Consensus 11 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~v-~~~g~~~~~~~~~~~~~~~l~~g~~v 89 (512)
T TIGR03689 11 SSLGARNAKLAELLKAARDKLSKLKSQLEQLAQPPSTYGTFLQTAIDDETAEV-FTAGRRMRVTVSPNVNAAELVPGQTV 89 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEEEeccCCCeEEE-EeCCceEEEEeCCCCCHHHCCCCCEE
Confidence 44567888888899999999999999999999999999999999 88889999 89999999999999999999999999
Q ss_pred EecCCcceeeeccCCCC
Q psy7782 204 LLNHKVHAVVGVLSDDT 220 (225)
Q Consensus 204 ~ln~~~~~Iv~vLp~~~ 220 (225)
.||+ ++.||+.++++.
T Consensus 90 ~l~e-~~~~v~~~~~~~ 105 (512)
T TIGR03689 90 RLNE-ALQVVEARDFET 105 (512)
T ss_pred EECC-cceeeccCCCCC
Confidence 9999 999999988754
No 35
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.48 E-value=3.9e-13 Score=120.23 Aligned_cols=102 Identities=33% Similarity=0.557 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHhhhchhhhhHHHHHHHHhhhcCCCceeeEEEEEecCCeEEEEccCCCeEEEeecCCCCcCCCCCCCe
Q psy7782 123 DYLLMEEEFIRNQERLKPQEEKNEEERSRVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCS 202 (225)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~ev~~l~~~p~~vg~v~e~~d~~~~iV~~~~g~~~~v~v~~~vd~~~L~pG~~ 202 (225)
....++.++.....+....+++++++++++++++.+|+.+|+|++.++++.++|++++|.+|++++.++++++.|+||++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 86 (364)
T TIGR01242 7 RIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSPPLIVGTVLEVLDDNRVVVKSSTGPNFVVNVSAFIDRKSLKPGAR 86 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEecCCEEEEEeCCCCEEEEeccccCCHhHCCCCCE
Confidence 34455666666677777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcceeeeccCCCCCCCC
Q psy7782 203 VLLNHKVHAVVGVLSDDTDPMV 224 (225)
Q Consensus 203 V~ln~~~~~Iv~vLp~~~D~~v 224 (225)
|+++..+++++.+||...||.+
T Consensus 87 v~~~~~~~~~~~~l~~~~~~~~ 108 (364)
T TIGR01242 87 VALNQQTLTIVDVLPTSKDPLV 108 (364)
T ss_pred EEEcCCcceEEeeccccccccc
Confidence 9999999999999999999875
No 36
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.47 E-value=2e-14 Score=128.61 Aligned_cols=90 Identities=42% Similarity=0.683 Sum_probs=75.5
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccc---ccCCceeeccCCC--------C-CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSP---ALGYHYYCRGAGS--------N-SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~---~~~~~~~~~~~~~--------~-~~~ 68 (225)
.|++++++.|.+++..|+.+++.|..+|+.+++|+|||||||||||++|++ ..+.+|+.+..++ + ..+
T Consensus 125 ~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i 204 (364)
T TIGR01242 125 GGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLV 204 (364)
T ss_pred CChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHH
Confidence 489999999999999999999999999999999999999999999999974 3456777665433 2 345
Q ss_pred cchhhhhhcCCCCCC-----ccccccc
Q psy7782 69 KDDKDKKKKYEPPIP-----TRVGKKK 90 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii-----d~igk~r 90 (225)
+.+|+.|+..+|||+ |.++.++
T Consensus 205 ~~~f~~a~~~~p~il~iDEiD~l~~~~ 231 (364)
T TIGR01242 205 REIFELAKEKAPSIIFIDEIDAIAAKR 231 (364)
T ss_pred HHHHHHHHhcCCcEEEhhhhhhhcccc
Confidence 789999999999986 5565554
No 37
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.46 E-value=2.3e-14 Score=145.26 Aligned_cols=74 Identities=14% Similarity=0.191 Sum_probs=58.0
Q ss_pred cccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC----------------------------
Q psy7782 16 LPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS---------------------------- 64 (225)
Q Consensus 16 ~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~---------------------------- 64 (225)
.|......+.++|+.+|+||||+||||||||+||+ +.+++||+.+++++
T Consensus 1614 ~~s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~ 1693 (2281)
T CHL00206 1614 FPSHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDI 1693 (2281)
T ss_pred CcccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccc
Confidence 34445567788999999999999999999999997 55668888665432
Q ss_pred ---------------------C---CCccchhhhhhcCCCCCC-----cccccc
Q psy7782 65 ---------------------N---SDKKDDKDKKKKYEPPIP-----TRVGKK 89 (225)
Q Consensus 65 ---------------------~---~~~~~~f~~a~~~~p~ii-----d~igk~ 89 (225)
+ ..++.+|+.|++++|||| |++|.+
T Consensus 1694 ~~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ 1747 (2281)
T CHL00206 1694 DRDLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN 1747 (2281)
T ss_pred ccccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC
Confidence 1 125779999999999997 777754
No 38
>KOG0741|consensus
Probab=99.45 E-value=5.7e-14 Score=127.81 Aligned_cols=86 Identities=28% Similarity=0.416 Sum_probs=69.0
Q ss_pred HHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc------------cccCCceeeccCCCC-CCccchhhhhh
Q psy7782 10 IKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS------------PALGYHYYCRGAGSN-SDKKDDKDKKK 76 (225)
Q Consensus 10 l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~------------~~~~~~~~~~~~~~~-~~~~~~f~~a~ 76 (225)
.++.+....-.|+..+++|+.--+|+|||||||||||++|+ -+-|..+++.|+|++ +++|++|..|.
T Consensus 234 FRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAE 313 (744)
T KOG0741|consen 234 FRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAE 313 (744)
T ss_pred HHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHH
Confidence 34444555678999999999999999999999999999996 345688889999998 89999999985
Q ss_pred cC--------CCCCC-----ccccccccccCC
Q psy7782 77 KY--------EPPIP-----TRVGKKKRKAKG 95 (225)
Q Consensus 77 ~~--------~p~ii-----d~igk~r~~~~g 95 (225)
+. .=+|| |+|+|+|+...|
T Consensus 314 eE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g 345 (744)
T KOG0741|consen 314 EEQRRLGANSGLHIIIFDEIDAICKQRGSMAG 345 (744)
T ss_pred HHHHhhCccCCceEEEehhhHHHHHhcCCCCC
Confidence 52 23344 899999985444
No 39
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.44 E-value=2.3e-14 Score=132.28 Aligned_cols=79 Identities=22% Similarity=0.273 Sum_probs=65.5
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCC--------CC-CCcc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAG--------SN-SDKK 69 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~--------~~-~~~~ 69 (225)
|++.+|+++.+.... .+.....+|+.+++|+|||||||||||++|+ .+.+.+|+.+..+ ++ ..++
T Consensus 232 Gl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~ 308 (489)
T CHL00195 232 GLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMR 308 (489)
T ss_pred CHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHH
Confidence 889999999886654 3456678899999999999999999999997 5566888876544 33 5568
Q ss_pred chhhhhhcCCCCCC
Q psy7782 70 DDKDKKKKYEPPIP 83 (225)
Q Consensus 70 ~~f~~a~~~~p~ii 83 (225)
++|..|+.++|||+
T Consensus 309 ~~f~~A~~~~P~IL 322 (489)
T CHL00195 309 QMIRIAEALSPCIL 322 (489)
T ss_pred HHHHHHHhcCCcEE
Confidence 99999999999997
No 40
>CHL00176 ftsH cell division protein; Validated
Probab=99.44 E-value=4.9e-14 Score=133.83 Aligned_cols=90 Identities=32% Similarity=0.544 Sum_probs=77.1
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccc---ccCCceeeccCCC--------C-CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSP---ALGYHYYCRGAGS--------N-SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~---~~~~~~~~~~~~~--------~-~~~ 68 (225)
.|++++++++.+.+.+ +++++.|..+|...++|+|||||||||||++|++ .++.+|+.++.++ + +.+
T Consensus 186 ~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~v 264 (638)
T CHL00176 186 AGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARV 264 (638)
T ss_pred cChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHH
Confidence 4899999999999888 9999999999999999999999999999999984 4568888776543 3 556
Q ss_pred cchhhhhhcCCCCCC-----cccccccc
Q psy7782 69 KDDKDKKKKYEPPIP-----TRVGKKKR 91 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii-----d~igk~r~ 91 (225)
+++|..|+..+|||+ |.++++|.
T Consensus 265 r~lF~~A~~~~P~ILfIDEID~l~~~r~ 292 (638)
T CHL00176 265 RDLFKKAKENSPCIVFIDEIDAVGRQRG 292 (638)
T ss_pred HHHHHHHhcCCCcEEEEecchhhhhccc
Confidence 899999999999996 66776553
No 41
>KOG0743|consensus
Probab=99.41 E-value=5.7e-14 Score=125.97 Aligned_cols=61 Identities=25% Similarity=0.448 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccccC---CceeeccCCC
Q psy7782 4 DVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPALG---YHYYCRGAGS 64 (225)
Q Consensus 4 ~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~~---~~~~~~~~~~ 64 (225)
.+.|+.|.+.+..+++..+.|++.|.++.||.|||||||||||++++|+|| ..++.+...+
T Consensus 207 ~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~ 270 (457)
T KOG0743|consen 207 PDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTE 270 (457)
T ss_pred hhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecc
Confidence 467899999999999999999999999999999999999999999998887 5555555544
No 42
>KOG0652|consensus
Probab=99.40 E-value=2e-13 Score=115.37 Aligned_cols=98 Identities=26% Similarity=0.426 Sum_probs=86.2
Q ss_pred HHHHHHHHHhhhchhhhhHHHHHHHHhhhcCCCceeeEEEEEec-------CC--------------eEEEEccCCCeEE
Q psy7782 127 MEEEFIRNQERLKPQEEKNEEERSRVDDLRGTPMSVGTLEEIID-------DN--------------HAIVSTSVGSEHY 185 (225)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~~ev~~l~~~p~~vg~v~e~~d-------~~--------------~~iV~~~~g~~~~ 185 (225)
+..+..+...+++..++.|++-.+.++-.+..|+.|+.|+|++| ++ -++|++++++.|+
T Consensus 39 ~~sev~ri~he~~~~~ekIkeN~EkIk~Nk~LPYLV~NvvE~ld~~~~~~~e~sg~n~~ld~qrkgkcaViktStRqt~f 118 (424)
T KOG0652|consen 39 MKSEVQRINHELQAMKEKIKENTEKIKVNKQLPYLVSNVVELLDMDPNDDEEDSGANIDLDSQRKGKCAVIKTSTRQTYF 118 (424)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhHHHhhccccCchHHhhHHHHhcCCcccchhccCCcccccccccceeEEEecccceeee
Confidence 34455566667777788888888889999999999999999996 21 2688999999999
Q ss_pred EeecCCCCcCCCCCCCeEEecCCcceeeeccCCCCCCCC
Q psy7782 186 VSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMV 224 (225)
Q Consensus 186 v~v~~~vd~~~L~pG~~V~ln~~~~~Iv~vLp~~~D~~v 224 (225)
+++-..||+++|+||+.|++|+++|-|.+.||+++|++|
T Consensus 119 LPvvGLvd~~~LkPgDLVgvnKDsyliletLP~eyDsrV 157 (424)
T KOG0652|consen 119 LPVVGLVDPDKLKPGDLVGVNKDSYLILETLPSEYDSRV 157 (424)
T ss_pred eeeecccChhhCCCcceeeecCCceeehhcCChhhhhhc
Confidence 999999999999999999999999999999999999987
No 43
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.39 E-value=3.6e-12 Score=115.10 Aligned_cols=103 Identities=29% Similarity=0.510 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHhhhchhhhhHHHHHHHHhhhcCCCceeeEEEEEecCCeEEEEccCCCeEEEeecCCCCcCCCCCCC
Q psy7782 122 KDYLLMEEEFIRNQERLKPQEEKNEEERSRVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGC 201 (225)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ev~~l~~~p~~vg~v~e~~d~~~~iV~~~~g~~~~v~v~~~vd~~~L~pG~ 201 (225)
.....++..+..+..+++.++.+++++++++++++.+|+.+|+|.+.+++++++|++++|.+|+|++.++++...|+||+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~l~~g~ 94 (389)
T PRK03992 15 EQIRQLELKLRDLEAENEKLERELERLKSELEKLKSPPLIVATVLEVLDDGRVVVKSSGGPQFLVNVSPFIDREKLKPGA 94 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEEeCCCeEEEEECCCCEEEEeccccCCHhHCCCCC
Confidence 34556666777777777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCcceeeeccCCCCCCCC
Q psy7782 202 SVLLNHKVHAVVGVLSDDTDPMV 224 (225)
Q Consensus 202 ~V~ln~~~~~Iv~vLp~~~D~~v 224 (225)
+|.+|..++++++++|...|+.|
T Consensus 95 ~v~~~~~~~~~~~~l~~~~~~~~ 117 (389)
T PRK03992 95 RVALNQQSLAIVEVLPSEKDPRV 117 (389)
T ss_pred EEEEcCcchhhhhcccccccchh
Confidence 99999999999999999999875
No 44
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.38 E-value=1.4e-13 Score=121.84 Aligned_cols=65 Identities=15% Similarity=0.137 Sum_probs=52.3
Q ss_pred HcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC--------C-CCccchhhhhhcC-----CCCCC-----
Q psy7782 26 EMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS--------N-SDKKDDKDKKKKY-----EPPIP----- 83 (225)
Q Consensus 26 ~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~--------~-~~~~~~f~~a~~~-----~p~ii----- 83 (225)
..|+.+|+|++||||||||||++|+ .++|++|+.+++++ + +.+|++|..|++. +||||
T Consensus 142 ~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEI 221 (413)
T PLN00020 142 LPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDL 221 (413)
T ss_pred ccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehh
Confidence 3678999999999999999999997 56778888766555 4 6679999999865 69997
Q ss_pred ccccccc
Q psy7782 84 TRVGKKK 90 (225)
Q Consensus 84 d~igk~r 90 (225)
|++..+|
T Consensus 222 DA~~g~r 228 (413)
T PLN00020 222 DAGAGRF 228 (413)
T ss_pred hhcCCCC
Confidence 6665555
No 45
>KOG0740|consensus
Probab=99.38 E-value=1e-13 Score=124.69 Aligned_cols=81 Identities=30% Similarity=0.542 Sum_probs=72.7
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC--------C-CCcc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS--------N-SDKK 69 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~--------~-~~~~ 69 (225)
|++++++.+++.+++|+..|+.|..+. .+.+|+||+||||||||+|++ .++++.||++++++ + .-+|
T Consensus 157 gl~~~k~~l~e~vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vr 235 (428)
T KOG0740|consen 157 GLEDAKQSLKEAVILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGESEKLVR 235 (428)
T ss_pred chhhHHHHhhhhhhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChHHHHHH
Confidence 789999999999999999999999875 788999999999999999997 66779999887666 3 4469
Q ss_pred chhhhhhcCCCCCC
Q psy7782 70 DDKDKKKKYEPPIP 83 (225)
Q Consensus 70 ~~f~~a~~~~p~ii 83 (225)
.+|..|+..+|+||
T Consensus 236 alf~vAr~~qPsvi 249 (428)
T KOG0740|consen 236 ALFKVARSLQPSVI 249 (428)
T ss_pred HHHHHHHhcCCeEE
Confidence 99999999999998
No 46
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.35 E-value=4.2e-13 Score=129.98 Aligned_cols=90 Identities=37% Similarity=0.656 Sum_probs=75.9
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccc---ccCCceeeccCCC--------C-CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSP---ALGYHYYCRGAGS--------N-SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~---~~~~~~~~~~~~~--------~-~~~ 68 (225)
.|++++++.|.+.+.+|+.+|+.|..+|+.+++|+|||||||||||++|++ ..+.+|+.++..+ . ..+
T Consensus 181 ~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l 260 (733)
T TIGR01243 181 GGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERL 260 (733)
T ss_pred cCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHH
Confidence 489999999999999999999999999999999999999999999999974 4457777766443 2 446
Q ss_pred cchhhhhhcCCCCCC-----ccccccc
Q psy7782 69 KDDKDKKKKYEPPIP-----TRVGKKK 90 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii-----d~igk~r 90 (225)
+.+|+.|...+|||+ |.+..++
T Consensus 261 ~~lf~~a~~~~p~il~iDEid~l~~~r 287 (733)
T TIGR01243 261 REIFKEAEENAPSIIFIDEIDAIAPKR 287 (733)
T ss_pred HHHHHHHHhcCCcEEEeehhhhhcccc
Confidence 899999999999986 5555443
No 47
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.30 E-value=3.5e-12 Score=121.82 Aligned_cols=89 Identities=34% Similarity=0.531 Sum_probs=76.1
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC--------C-CCcc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS--------N-SDKK 69 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~--------~-~~~~ 69 (225)
|++..++.+.+.+.+ +..++.|..++...++|+||+||||||||++|+ ..++.+|+.++.++ + ..++
T Consensus 156 g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~ 234 (644)
T PRK10733 156 GCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVR 234 (644)
T ss_pred CHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHH
Confidence 788999999999988 788999999998999999999999999999997 55678888776543 4 5668
Q ss_pred chhhhhhcCCCCCC-----cccccccc
Q psy7782 70 DDKDKKKKYEPPIP-----TRVGKKKR 91 (225)
Q Consensus 70 ~~f~~a~~~~p~ii-----d~igk~r~ 91 (225)
++|..|+..+|||+ |.++.+|.
T Consensus 235 ~~f~~a~~~~P~IifIDEiD~l~~~r~ 261 (644)
T PRK10733 235 DMFEQAKKAAPCIIFIDEIDAVGRQRG 261 (644)
T ss_pred HHHHHHHhcCCcEEEehhHhhhhhccC
Confidence 99999999999996 77777664
No 48
>KOG0730|consensus
Probab=99.26 E-value=1.8e-12 Score=120.54 Aligned_cols=89 Identities=37% Similarity=0.697 Sum_probs=75.5
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCC--------CC-CCcc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAG--------SN-SDKK 69 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~--------~~-~~~~ 69 (225)
|+......+.+.+.+|+.++..|..+|+++|+|+|+|||||||||++++ .+.++.++.+++. ++ +..|
T Consensus 188 g~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR 267 (693)
T KOG0730|consen 188 GLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLR 267 (693)
T ss_pred hhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHH
Confidence 6788899999999999999999999999999999999999999999997 4555666655544 44 6679
Q ss_pred chhhhhhcCC-CCCC-----ccccccc
Q psy7782 70 DDKDKKKKYE-PPIP-----TRVGKKK 90 (225)
Q Consensus 70 ~~f~~a~~~~-p~ii-----d~igk~r 90 (225)
..|+.|.+++ |+|| |+++-+|
T Consensus 268 ~~f~~a~k~~~psii~IdEld~l~p~r 294 (693)
T KOG0730|consen 268 KAFAEALKFQVPSIIFIDELDALCPKR 294 (693)
T ss_pred HHHHHHhccCCCeeEeHHhHhhhCCcc
Confidence 9999999999 9997 6655433
No 49
>KOG0651|consensus
Probab=98.96 E-value=2.4e-10 Score=98.67 Aligned_cols=86 Identities=21% Similarity=0.329 Sum_probs=77.1
Q ss_pred chhhhhHHHHHHHHhhhcCCCceeeEEEEEecCCeEEEEccCCCeEEEeecCCCCcCCCCCCCeEEecCCcceeeeccCC
Q psy7782 139 KPQEEKNEEERSRVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSD 218 (225)
Q Consensus 139 ~~~~~~~~~l~~ev~~l~~~p~~vg~v~e~~d~~~~iV~~~~g~~~~v~v~~~vd~~~L~pG~~V~ln~~~~~Iv~vLp~ 218 (225)
+.+.++...-...++.+++....+|.|.+..+++++|||.++|++|+|++...+|..+|++|+||+++-++..|+..||.
T Consensus 34 r~l~k~~~ksend~kslqsvg~~~gevlk~l~~~~~iVK~s~Gpryvvg~~~~~D~~~i~~G~rv~ldittltIm~~lpr 113 (388)
T KOG0651|consen 34 RFLGKKYDKSENDLKSLQSVGQIIGEVLKQLEDEKFIVKASSGPRYVVGCRRSVDKEKIARGTRVVLDITTLTIMRGLPR 113 (388)
T ss_pred HHHhhhcCcccchHHHhhhcCchhHHHHhhccccceEeecCCCCcEEEEcccccchhhhccCceeeeeeeeeehhcccch
Confidence 34444444555668899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy7782 219 DTDPMVT 225 (225)
Q Consensus 219 ~~D~~v~ 225 (225)
++| +|+
T Consensus 114 evd-~vy 119 (388)
T KOG0651|consen 114 EVD-LVY 119 (388)
T ss_pred HHH-HHH
Confidence 999 653
No 50
>CHL00181 cbbX CbbX; Provisional
Probab=98.85 E-value=1.3e-09 Score=94.76 Aligned_cols=51 Identities=25% Similarity=0.350 Sum_probs=43.4
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCc---eeEEEcCCCCCCCcccccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPK---GVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~---giLl~GppGtGKT~la~~~ 52 (225)
+||+++|++|.+++.+ +..+..+...|+.++. ++||+||||||||++|++.
T Consensus 26 ~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 26 VGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHH
Confidence 6999999999999988 6567888888876643 4899999999999999744
No 51
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.77 E-value=5.3e-09 Score=87.19 Aligned_cols=56 Identities=20% Similarity=0.321 Sum_probs=37.3
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS 64 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~ 64 (225)
||++++++.++-++.. ....-.+..++|||||||||||+||. .+++.+|...++..
T Consensus 27 iGQ~~l~~~l~i~i~a--------a~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~ 85 (233)
T PF05496_consen 27 IGQEHLKGNLKILIRA--------AKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPA 85 (233)
T ss_dssp -S-HHHHHHHHHHHHH--------HHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC
T ss_pred cCcHHHHhhhHHHHHH--------HHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchh
Confidence 6888888887776665 11112456799999999999999996 77888888776654
No 52
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.76 E-value=3.7e-09 Score=90.42 Aligned_cols=51 Identities=33% Similarity=0.305 Sum_probs=40.5
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCC---CceeEEEcCCCCCCCcccccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKP---PKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~---~~giLl~GppGtGKT~la~~~ 52 (225)
+||+++|+.|++.+.++... ......|+.+ ..++|||||||||||++|+.+
T Consensus 9 ~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 9 VGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred cChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHH
Confidence 69999999999999995444 4445567653 357899999999999999744
No 53
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.75 E-value=3.9e-09 Score=91.59 Aligned_cols=49 Identities=27% Similarity=0.354 Sum_probs=43.8
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCC---CceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKP---PKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~---~~giLl~GppGtGKT~la~ 50 (225)
+||+++|+.|.+.+.+ +..++.+..+|+.+ ..++||+||||||||++|+
T Consensus 25 ~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 25 IGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred cCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHH
Confidence 6999999999999999 77888888899774 3489999999999999994
No 54
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.71 E-value=1.1e-09 Score=82.84 Aligned_cols=49 Identities=33% Similarity=0.473 Sum_probs=40.3
Q ss_pred eEEEcCCCCCCCcccc---cccCCceeeccCCC--------C-CCccchhhhhhcCC-CCCC
Q psy7782 35 VILYGPPGTGKTLPFS---PALGYHYYCRGAGS--------N-SDKKDDKDKKKKYE-PPIP 83 (225)
Q Consensus 35 iLl~GppGtGKT~la~---~~~~~~~~~~~~~~--------~-~~~~~~f~~a~~~~-p~ii 83 (225)
+|||||||||||++|+ ...+.+++.++.++ + ..+++.|..|+..+ |||+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl 62 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVL 62 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceee
Confidence 6999999999999997 55678888877666 1 34478999999888 9987
No 55
>KOG0729|consensus
Probab=98.64 E-value=2.2e-08 Score=85.28 Aligned_cols=70 Identities=21% Similarity=0.276 Sum_probs=65.3
Q ss_pred cCCCceeeEEEEEec----CCeEEEEccCCCeEEEeecCCCCcCCCCCCCeEEecCCcceeeeccCCCCCCCCC
Q psy7782 156 RGTPMSVGTLEEIID----DNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVT 225 (225)
Q Consensus 156 ~~~p~~vg~v~e~~d----~~~~iV~~~~g~~~~v~v~~~vd~~~L~pG~~V~ln~~~~~Iv~vLp~~~D~~v~ 225 (225)
..+|++||.+.++++ |-.++|...+-.+|+|+....+++.+++.|+||+++++.|.|.-.||+.+||+|+
T Consensus 91 ~eqplqvarctkii~~~~~d~~yvin~kqiakfvv~lg~~vsptdieegmrvgvdrnkyqi~lplppkidpsvt 164 (435)
T KOG0729|consen 91 EEQPLQVARCTKIISGNSEDPKYVINVKQIAKFVVGLGDRVSPTDIEEGMRVGVDRNKYQIQLPLPPKIDPSVT 164 (435)
T ss_pred ccCCceeheeeeecCCCCCCcceeeeHHHHHHHHhccccccCchhhhhhheecccccceeEeccCCCCCCCcee
Confidence 478999999999996 4578898889999999999999999999999999999999999999999999984
No 56
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=2.5e-08 Score=94.23 Aligned_cols=100 Identities=23% Similarity=0.258 Sum_probs=73.3
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCce-eEEEcCCCCCCCcccc---cccCCceeeccCCC--------C----
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKG-VILYGPPGTGKTLPFS---PALGYHYYCRGAGS--------N---- 65 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~g-iLl~GppGtGKT~la~---~~~~~~~~~~~~~~--------~---- 65 (225)
||+++|+.|.|++...... -..... ++|.||||+|||++++ ...|..|+-++.|. |
T Consensus 327 GLekVKeRIlEyLAV~~l~--------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRT 398 (782)
T COG0466 327 GLEKVKERILEYLAVQKLT--------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRT 398 (782)
T ss_pred CchhHHHHHHHHHHHHHHh--------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccccc
Confidence 8999999999999762111 111123 4699999999999997 55679999998887 1
Q ss_pred ------CCccchhhhhhcCCCCCC-ccccccccccCCCCccccCCccCCch
Q psy7782 66 ------SDKKDDKDKKKKYEPPIP-TRVGKKKRKAKGPDAAIKLPQVTPHT 109 (225)
Q Consensus 66 ------~~~~~~f~~a~~~~p~ii-d~igk~r~~~~g~~~~~~l~~v~p~~ 109 (225)
.++-.-..+|....|-++ |.|-|.....+|+.+++.+...-|..
T Consensus 399 YIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQ 449 (782)
T COG0466 399 YIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQ 449 (782)
T ss_pred ccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhh
Confidence 112245668888999986 88888887788888888876555543
No 57
>KOG0742|consensus
Probab=98.57 E-value=1e-08 Score=91.60 Aligned_cols=55 Identities=29% Similarity=0.427 Sum_probs=47.6
Q ss_pred CCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC----C----CCccchhhhhhcCCCCCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS----N----SDKKDDKDKKKKYEPPIP 83 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~----~----~~~~~~f~~a~~~~p~ii 83 (225)
..+.+.||||||||||||++|+ .-+|.++..|.+|+ | +.++.+|+-|++..--++
T Consensus 381 ~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLl 446 (630)
T KOG0742|consen 381 QAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLL 446 (630)
T ss_pred cchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccceE
Confidence 3577999999999999999997 66889999999999 3 566899999998877765
No 58
>KOG0744|consensus
Probab=98.42 E-value=2.5e-08 Score=86.83 Aligned_cols=73 Identities=18% Similarity=0.128 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHcccCChHHHHHcC-CCCCceeEEEcCCCCCCCcccccccC--------------------CceeeccCC
Q psy7782 5 VQIQEIKESVELPLTHPEYYEEMG-IKPPKGVILYGPPGTGKTLPFSPALG--------------------YHYYCRGAG 63 (225)
Q Consensus 5 ~~k~~l~~~v~~~l~~~~~~~~~g-~~~~~giLl~GppGtGKT~la~~~~~--------------------~~~~~~~~~ 63 (225)
++|+.+..+....+...+....-. +.+.|=+|||||||||||+||++.+. ..+|+.+.+
T Consensus 149 ~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFs 228 (423)
T KOG0744|consen 149 NLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFS 228 (423)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHh
Confidence 356677777665444433322211 45678899999999999999963332 334455666
Q ss_pred CC-CCccchhhhhhc
Q psy7782 64 SN-SDKKDDKDKKKK 77 (225)
Q Consensus 64 ~~-~~~~~~f~~a~~ 77 (225)
++ +.+..+|++..+
T Consensus 229 ESgKlV~kmF~kI~E 243 (423)
T KOG0744|consen 229 ESGKLVAKMFQKIQE 243 (423)
T ss_pred hhhhHHHHHHHHHHH
Confidence 64 667788886544
No 59
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.39 E-value=2.4e-07 Score=90.64 Aligned_cols=80 Identities=23% Similarity=0.221 Sum_probs=54.4
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccc---ccCCceeeccCCC-------------
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSP---ALGYHYYCRGAGS------------- 64 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~---~~~~~~~~~~~~~------------- 64 (225)
+|++++++.|.+++..+... +-.....+|||||||||||++|++ ..+.+|+.++.+.
T Consensus 323 ~G~~~~k~~i~~~~~~~~~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~ 395 (775)
T TIGR00763 323 YGLKKVKERILEYLAVQKLR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRT 395 (775)
T ss_pred CChHHHHHHHHHHHHHHHhh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCc
Confidence 48999999999988763211 112234799999999999999974 3456777665432
Q ss_pred ----C-CCccchhhhhhcCCCCCC-cccc
Q psy7782 65 ----N-SDKKDDKDKKKKYEPPIP-TRVG 87 (225)
Q Consensus 65 ----~-~~~~~~f~~a~~~~p~ii-d~ig 87 (225)
. ..+.+.|..|....|+|+ |.|.
T Consensus 396 ~~g~~~g~i~~~l~~~~~~~~villDEid 424 (775)
T TIGR00763 396 YVGAMPGRIIQGLKKAKTKNPLFLLDEID 424 (775)
T ss_pred eeCCCCchHHHHHHHhCcCCCEEEEechh
Confidence 1 223467778887888765 5553
No 60
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.35 E-value=1.2e-07 Score=84.55 Aligned_cols=59 Identities=24% Similarity=0.325 Sum_probs=46.5
Q ss_pred CCceeEEEcCCCCCCCcccc---cccCCceeeccCCC-C-CCccchhhhhhcCCC----CCC--cccccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS-N-SDKKDDKDKKKKYEP----PIP--TRVGKK 89 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~-~-~~~~~~f~~a~~~~p----~ii--d~igk~ 89 (225)
...+++||||||||||++|+ ...+.+|..+++.. | +.+|++|+.|+++.- .|+ |.|.+=
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRf 116 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRF 116 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhc
Confidence 45689999999999999997 55668999988877 4 778999999976654 343 777543
No 61
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.35 E-value=3.6e-07 Score=78.42 Aligned_cols=56 Identities=20% Similarity=0.311 Sum_probs=43.2
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS 64 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~ 64 (225)
||.+++|+.|.-++.. +...-....++|||||||.|||+||. .++|.++-..++..
T Consensus 29 iGQ~~vk~~L~ifI~A--------Ak~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~ 87 (332)
T COG2255 29 IGQEKVKEQLQIFIKA--------AKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPA 87 (332)
T ss_pred cChHHHHHHHHHHHHH--------HHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccc
Confidence 6888899988888877 33344677899999999999999995 77777766554443
No 62
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.26 E-value=1.6e-07 Score=85.14 Aligned_cols=82 Identities=18% Similarity=0.140 Sum_probs=54.9
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCC-CCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC-------C----
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGI-KPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS-------N---- 65 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~-~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~-------~---- 65 (225)
+|++++++.+...+...++.......... ..++++||+||||||||++|+ ...+.+|+.+.... |
T Consensus 18 iGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e 97 (443)
T PRK05201 18 IGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVE 97 (443)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHH
Confidence 68899999998887553322111111110 135899999999999999997 45668888665432 2
Q ss_pred CCccchhhhhhcCCCCC
Q psy7782 66 SDKKDDKDKKKKYEPPI 82 (225)
Q Consensus 66 ~~~~~~f~~a~~~~p~i 82 (225)
+-++++|+.|..++|+=
T Consensus 98 ~~ir~L~~~A~~~~~~~ 114 (443)
T PRK05201 98 SIIRDLVEIAVKMVREE 114 (443)
T ss_pred HHHHHHHHHHHHHhHHH
Confidence 33489999997777663
No 63
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.20 E-value=7.9e-07 Score=80.59 Aligned_cols=77 Identities=21% Similarity=0.235 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcC-CCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC-------C----
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMG-IKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS-------N---- 65 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g-~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~-------~---- 65 (225)
+|.+++++.+...+...++.......++ -.+|+++||+||||||||++|+ ...+.+|+.+.... |
T Consensus 15 iGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE 94 (441)
T TIGR00390 15 IGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVE 94 (441)
T ss_pred cCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHH
Confidence 6889999998877765432222111111 2256999999999999999997 55678888766442 2
Q ss_pred CCccchhhhhhc
Q psy7782 66 SDKKDDKDKKKK 77 (225)
Q Consensus 66 ~~~~~~f~~a~~ 77 (225)
+.++++|..|..
T Consensus 95 ~i~r~l~e~A~~ 106 (441)
T TIGR00390 95 SMVRDLTDAAVK 106 (441)
T ss_pred HHHHHHHHHHHH
Confidence 223678887743
No 64
>KOG2004|consensus
Probab=98.19 E-value=8.5e-07 Score=84.08 Aligned_cols=94 Identities=26% Similarity=0.298 Sum_probs=61.9
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHc-CCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCCCCCc---------
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEM-GIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGSNSDK--------- 68 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~-g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~~~~~--------- 68 (225)
||+++|+.|.|++.- ..+ |-...+=++|+||||.|||++++ ...|..||.+++|.-+.+
T Consensus 415 gm~dVKeRILEfiAV--------~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRT 486 (906)
T KOG2004|consen 415 GMEDVKERILEFIAV--------GKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRT 486 (906)
T ss_pred chHHHHHHHHHHHHH--------HhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccccee
Confidence 899999999999866 111 22233456799999999999997 567899999988872111
Q ss_pred ---------cchhhhhhcCCCCCC-ccccccccccCCCCccccCC
Q psy7782 69 ---------KDDKDKKKKYEPPIP-TRVGKKKRKAKGPDAAIKLP 103 (225)
Q Consensus 69 ---------~~~f~~a~~~~p~ii-d~igk~r~~~~g~~~~~~l~ 103 (225)
-+-.+...-..|-|+ |.|.|=.+..+|+.+++-+.
T Consensus 487 YVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLE 531 (906)
T KOG2004|consen 487 YVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLE 531 (906)
T ss_pred eeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHH
Confidence 133344455677774 55544334456665555543
No 65
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.13 E-value=1.9e-06 Score=74.93 Aligned_cols=53 Identities=23% Similarity=0.375 Sum_probs=37.7
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeecc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRG 61 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~ 61 (225)
+|.+++++.|..++.... ..-..+.+++||||||||||++|+ ...+.++...+
T Consensus 7 iG~~~~~~~l~~~l~~~~--------~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~ 62 (305)
T TIGR00635 7 IGQEKVKEQLQLFIEAAK--------MRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITS 62 (305)
T ss_pred cCHHHHHHHHHHHHHHHH--------hcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence 689999999888885411 112345789999999999999996 33445554443
No 66
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.00 E-value=4.3e-06 Score=73.85 Aligned_cols=53 Identities=25% Similarity=0.344 Sum_probs=37.0
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeecc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRG 61 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~ 61 (225)
+|.+++++.+...+.... ..-.++.++|||||||||||++|+ ...+..+...+
T Consensus 28 vG~~~~~~~l~~~l~~~~--------~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~ 83 (328)
T PRK00080 28 IGQEKVKENLKIFIEAAK--------KRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITS 83 (328)
T ss_pred cCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEe
Confidence 577888888887775411 112456799999999999999997 44455555443
No 67
>PRK04195 replication factor C large subunit; Provisional
Probab=97.99 E-value=5e-06 Score=77.24 Aligned_cols=55 Identities=33% Similarity=0.524 Sum_probs=42.8
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS 64 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~ 64 (225)
+|.+++++.|.+++.... .| .+++++|||||||||||++|+ ...+.+++.++.++
T Consensus 17 vg~~~~~~~l~~~l~~~~--------~g-~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 17 VGNEKAKEQLREWIESWL--------KG-KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred cCCHHHHHHHHHHHHHHh--------cC-CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence 577888888888885512 12 347899999999999999997 44668888888876
No 68
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.97 E-value=3.3e-06 Score=76.92 Aligned_cols=64 Identities=17% Similarity=0.211 Sum_probs=41.8
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHH--cCC-CCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEE--MGI-KPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS 64 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~--~g~-~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~ 64 (225)
+|++++++.|...+..+++.-..... -.. .+..++||+||||||||++|+ ...+.+|+.++.+.
T Consensus 74 iGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~ 143 (412)
T PRK05342 74 IGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATT 143 (412)
T ss_pred eChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhh
Confidence 68899999887776543222110000 011 245799999999999999997 44568888666543
No 69
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.96 E-value=2.3e-06 Score=83.32 Aligned_cols=53 Identities=25% Similarity=0.229 Sum_probs=39.6
Q ss_pred CCceeEEEcCCCCCCCcccccc-------------cCCceeeccCCC---C--------CCccchhhhhhcCCCCCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPA-------------LGYHYYCRGAGS---N--------SDKKDDKDKKKKYEPPIP 83 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~-------------~~~~~~~~~~~~---~--------~~~~~~f~~a~~~~p~ii 83 (225)
...++|||||||||||++|+.. .+..+++++.+. | ..++++|+.|+...|+|+
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~IL 278 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAIL 278 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEE
Confidence 4568999999999999998622 256677766443 1 345789999988888886
No 70
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.90 E-value=9.9e-06 Score=79.33 Aligned_cols=57 Identities=26% Similarity=0.260 Sum_probs=41.6
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS 64 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~ 64 (225)
.|++++|+.|.+++...... +......++|+||||||||++++ ...+.+|+.++.+.
T Consensus 325 ~g~~~vK~~i~~~l~~~~~~-------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~ 384 (784)
T PRK10787 325 YGLERVKDRILEYLAVQSRV-------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGG 384 (784)
T ss_pred cCHHHHHHHHHHHHHHHHhc-------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 48999999999988752211 11233468999999999999997 34567887666554
No 71
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.86 E-value=7.4e-06 Score=73.02 Aligned_cols=43 Identities=19% Similarity=0.314 Sum_probs=32.3
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCC-CCceeEEEcCCCCCCCccccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIK-PPKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~-~~~giLl~GppGtGKT~la~~ 51 (225)
+|++++++.+.+++.... .|.. ..+.++|+||||||||++|++
T Consensus 54 ~G~~~~i~~lv~~l~~~a--------~g~~~~r~il~L~GPPGsGKStla~~ 97 (361)
T smart00763 54 FGMEEAIERFVNYFKSAA--------QGLEERKQILYLLGPVGGGKSSLVEC 97 (361)
T ss_pred cCcHHHHHHHHHHHHHHH--------hcCCCCCcEEEEECCCCCCHHHHHHH
Confidence 588999888887776522 2323 457789999999999999963
No 72
>KOG0989|consensus
Probab=97.85 E-value=8.3e-06 Score=70.74 Aligned_cols=32 Identities=31% Similarity=0.396 Sum_probs=22.9
Q ss_pred ceeEEEcCCCCCCCcccc----cccC-----CceeeccCCC
Q psy7782 33 KGVILYGPPGTGKTLPFS----PALG-----YHYYCRGAGS 64 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~----~~~~-----~~~~~~~~~~ 64 (225)
-.+|||||||||||+.|. +..+ ..+.+.++++
T Consensus 58 p~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSd 98 (346)
T KOG0989|consen 58 PHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASD 98 (346)
T ss_pred ceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccc
Confidence 379999999999999774 2222 4445666666
No 73
>KOG2028|consensus
Probab=97.85 E-value=6.4e-06 Score=73.18 Aligned_cols=48 Identities=29% Similarity=0.420 Sum_probs=36.4
Q ss_pred CCceeEEEcCCCCCCCcccccccC------CceeeccCCCC--CCccchhhhhhcC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALG------YHYYCRGAGSN--SDKKDDKDKKKKY 78 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~------~~~~~~~~~~~--~~~~~~f~~a~~~ 78 (225)
...+++|+||||||||++|+.++. ..|+++++... ..+|++|+.|+..
T Consensus 161 ~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~ 216 (554)
T KOG2028|consen 161 RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNE 216 (554)
T ss_pred CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHH
Confidence 456899999999999999973222 44777777663 6679999988763
No 74
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.84 E-value=7e-06 Score=74.84 Aligned_cols=45 Identities=29% Similarity=0.417 Sum_probs=34.7
Q ss_pred CceeEEEcCCCCCCCccccc---ccCCceeeccCCCC--CCccchhhhhh
Q psy7782 32 PKGVILYGPPGTGKTLPFSP---ALGYHYYCRGAGSN--SDKKDDKDKKK 76 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~---~~~~~~~~~~~~~~--~~~~~~f~~a~ 76 (225)
..++|||||||||||++|+. ..+.+|+.++.... ..++++++.+.
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~~~~ 85 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVIEEAR 85 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHHHH
Confidence 45899999999999999974 45678888877653 55677777764
No 75
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=4.8e-06 Score=77.48 Aligned_cols=68 Identities=40% Similarity=0.736 Sum_probs=52.8
Q ss_pred cccCChHHHHHcCCCCCceeEEEcCCCCCCCccccccc--CCcee--------eccCCCC-CCccchhhhhhcCCCCCC
Q psy7782 16 LPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPAL--GYHYY--------CRGAGSN-SDKKDDKDKKKKYEPPIP 83 (225)
Q Consensus 16 ~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~--~~~~~--------~~~~~~~-~~~~~~f~~a~~~~p~ii 83 (225)
.|+.+++.++.+++.+++++++|||||||||++++..+ +..++ ..+.++. ...+.+|..|+.++|+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANEGAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhccCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 46889999999999999999999999999999996322 22332 2222223 445799999999999887
No 76
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.81 E-value=7e-06 Score=80.92 Aligned_cols=57 Identities=23% Similarity=0.162 Sum_probs=41.7
Q ss_pred CCCceeEEEcCCCCCCCccccc-------------ccCCceeeccCCC---C--------CCccchhhhhhcCCCCCC--
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSP-------------ALGYHYYCRGAGS---N--------SDKKDDKDKKKKYEPPIP-- 83 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~-------------~~~~~~~~~~~~~---~--------~~~~~~f~~a~~~~p~ii-- 83 (225)
..+.+++|+||||||||++|.. ..+.+++.++.+. | ..++++|+.++...|+|+
T Consensus 198 ~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfi 277 (821)
T CHL00095 198 RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVI 277 (821)
T ss_pred cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEE
Confidence 4567999999999999999851 1246778777554 2 245689998888888875
Q ss_pred ccc
Q psy7782 84 TRV 86 (225)
Q Consensus 84 d~i 86 (225)
|.+
T Consensus 278 DEi 280 (821)
T CHL00095 278 DEV 280 (821)
T ss_pred ecH
Confidence 544
No 77
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=1.2e-05 Score=74.58 Aligned_cols=39 Identities=26% Similarity=0.272 Sum_probs=29.1
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~ 51 (225)
+|.+++++.|...+.. + ..+.++|||||||||||++|+.
T Consensus 17 vGq~~i~~~L~~~i~~-----------~-~l~~~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 17 VGQDHVKKLIINALKK-----------N-SISHAYIFAGPRGTGKTTVARI 55 (472)
T ss_pred cCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHH
Confidence 5777777766665544 1 2456799999999999999973
No 78
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=1.1e-05 Score=73.25 Aligned_cols=47 Identities=15% Similarity=0.383 Sum_probs=37.8
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
+|.+.+++.|...+..+...+. .++...+.++|||||||+|||++|.
T Consensus 8 iGq~~~~~~L~~~i~~~~~~~~---~~~~~l~ha~Lf~Gp~G~GKt~lA~ 54 (394)
T PRK07940 8 VGQEAVVAELRAAARAARADVA---AAGSGMTHAWLFTGPPGSGRSVAAR 54 (394)
T ss_pred cChHHHHHHHHHHHHhcccccc---ccCCCCCeEEEEECCCCCcHHHHHH
Confidence 6899999999999988554322 2344567899999999999999985
No 79
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.76 E-value=5.4e-06 Score=63.71 Aligned_cols=40 Identities=35% Similarity=0.445 Sum_probs=30.4
Q ss_pred eeEEEcCCCCCCCcccc---cccCCceeeccCCCCCCccchhh
Q psy7782 34 GVILYGPPGTGKTLPFS---PALGYHYYCRGAGSNSDKKDDKD 73 (225)
Q Consensus 34 giLl~GppGtGKT~la~---~~~~~~~~~~~~~~~~~~~~~f~ 73 (225)
++||+||||||||++|+ +..+.+++.++........+++.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEecccccccccee
Confidence 58999999999999997 55578888888777555555554
No 80
>PLN03025 replication factor C subunit; Provisional
Probab=97.71 E-value=1.8e-05 Score=69.72 Aligned_cols=51 Identities=24% Similarity=0.276 Sum_probs=32.8
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccccC--------CceeeccCCC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPALG--------YHYYCRGAGS 64 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~~--------~~~~~~~~~~ 64 (225)
+|.+++.+.|+.++.. + ...++|||||||||||++|.+.+. ..++.++.++
T Consensus 16 ~g~~~~~~~L~~~~~~-----------~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd 74 (319)
T PLN03025 16 VGNEDAVSRLQVIARD-----------G--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD 74 (319)
T ss_pred cCcHHHHHHHHHHHhc-----------C--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc
Confidence 3556666666655432 1 123699999999999999863322 2356666665
No 81
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.71 E-value=1.6e-05 Score=59.82 Aligned_cols=50 Identities=38% Similarity=0.694 Sum_probs=32.4
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccccc------CCceeeccCCC
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPAL------GYHYYCRGAGS 64 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~------~~~~~~~~~~~ 64 (225)
|.+.+.+.+...+.. ...+.++++||||||||++++..+ +.+++.+...+
T Consensus 2 ~~~~~~~~i~~~~~~-------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~ 57 (151)
T cd00009 2 GQEEAIEALREALEL-------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASD 57 (151)
T ss_pred chHHHHHHHHHHHhC-------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhh
Confidence 455555555555443 145689999999999999997433 44555544443
No 82
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=2.9e-05 Score=71.01 Aligned_cols=23 Identities=48% Similarity=0.764 Sum_probs=19.7
Q ss_pred CceeEEEcCCCCCCCcccccccC
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~ 54 (225)
..++||+|||||||||+|+.+.+
T Consensus 198 gHnLl~~GpPGtGKTmla~Rl~~ 220 (490)
T COG0606 198 GHNLLLVGPPGTGKTMLASRLPG 220 (490)
T ss_pred CCcEEEecCCCCchHHhhhhhcc
Confidence 46999999999999999975555
No 83
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.65 E-value=2.4e-05 Score=70.21 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=29.1
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
+|.+++++.++..+.. | ..+..+|||||||||||++|+
T Consensus 19 iGq~~~~~~l~~~~~~-----------~-~~~h~~L~~Gp~G~GKTtla~ 56 (363)
T PRK14961 19 IGQKHIVTAISNGLSL-----------G-RIHHAWLLSGTRGVGKTTIAR 56 (363)
T ss_pred cChHHHHHHHHHHHHc-----------C-CCCeEEEEecCCCCCHHHHHH
Confidence 5777777777666544 2 345678999999999999996
No 84
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.62 E-value=3.1e-05 Score=70.49 Aligned_cols=62 Identities=19% Similarity=0.308 Sum_probs=38.4
Q ss_pred CChHHHHHHHHHHHHcccCChHH----HHHcCC-CCCceeEEEcCCCCCCCcccc---cccCCceeeccC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEY----YEEMGI-KPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGA 62 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~----~~~~g~-~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~ 62 (225)
+|.+++++.+...+....+.-.. ...-++ ....++||+||||||||++|+ ...+.+|..+..
T Consensus 80 iGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da 149 (413)
T TIGR00382 80 IGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADA 149 (413)
T ss_pred cCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEech
Confidence 68899999887776331111100 000011 124689999999999999997 345677765543
No 85
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.60 E-value=2.1e-05 Score=70.13 Aligned_cols=56 Identities=21% Similarity=0.375 Sum_probs=35.9
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccC--CceeeccCCC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALG--YHYYCRGAGS 64 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~--~~~~~~~~~~ 64 (225)
+|+.++.++.--.+.+ . .-|--..+++||.||||||||.+|- .+.| .||..+++++
T Consensus 27 VGQ~~AReAagiiv~m-I-------k~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSE 87 (398)
T PF06068_consen 27 VGQEKAREAAGIIVDM-I-------KEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSE 87 (398)
T ss_dssp ES-HHHHHHHHHHHHH-H-------HTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGG
T ss_pred cChHHHHHHHHHHHHH-H-------hcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccce
Confidence 3566666665555444 2 1233457999999999999999995 4444 9999998888
No 86
>KOG0736|consensus
Probab=97.58 E-value=1.8e-05 Score=75.80 Aligned_cols=62 Identities=23% Similarity=0.394 Sum_probs=48.1
Q ss_pred CCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC------C---CCccchhhhhhcCCCCCC-----ccccccc
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS------N---SDKKDDKDKKKKYEPPIP-----TRVGKKK 90 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~------~---~~~~~~f~~a~~~~p~ii-----d~igk~r 90 (225)
+...-.+||||+||||||++++ .+.|.+++.+...+ + .+....|.+|+...|||| |.+|..+
T Consensus 428 ~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~ 506 (953)
T KOG0736|consen 428 LTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQ 506 (953)
T ss_pred cccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecC
Confidence 3444578999999999999986 67888888776544 1 334688999999999998 7777444
No 87
>KOG0735|consensus
Probab=97.57 E-value=2.5e-05 Score=74.35 Aligned_cols=55 Identities=20% Similarity=0.238 Sum_probs=38.9
Q ss_pred CCCCceeEEEcCCCCCCCcccccccC---------CceeeccCCCCCC-------ccchhhhhhcCCCCCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALG---------YHYYCRGAGSNSD-------KKDDKDKKKKYEPPIP 83 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~---------~~~~~~~~~~~~~-------~~~~f~~a~~~~p~ii 83 (225)
+..+..|||+||+|||||.|+++.++ ..+++-.-..|++ .+++|..|-.++|+||
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiI 498 (952)
T KOG0735|consen 428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSII 498 (952)
T ss_pred ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEE
Confidence 34568999999999999999975444 2222222222322 2588999999999998
No 88
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.57 E-value=3.6e-05 Score=67.53 Aligned_cols=38 Identities=24% Similarity=0.491 Sum_probs=26.3
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~ 51 (225)
+|.+++++.|..++.. + ...++|||||||||||++|++
T Consensus 18 ~g~~~~~~~L~~~~~~-----------~--~~~~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 18 LGQDEVVERLSRAVDS-----------P--NLPHLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred cCCHHHHHHHHHHHhC-----------C--CCceEEEECCCCCCHHHHHHH
Confidence 3556666666655542 1 123799999999999999963
No 89
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.56 E-value=1.7e-05 Score=59.00 Aligned_cols=19 Identities=37% Similarity=0.702 Sum_probs=17.1
Q ss_pred CceeEEEcCCCCCCCcccc
Q psy7782 32 PKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~ 50 (225)
...++|+||||||||++++
T Consensus 2 ~~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 2 GEVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CCEEEEECCCCCcHHHHHH
Confidence 4679999999999999986
No 90
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.55 E-value=4.5e-05 Score=67.60 Aligned_cols=37 Identities=32% Similarity=0.593 Sum_probs=30.7
Q ss_pred CCCCCceeEEEcCCCCCCCcccc---cccC--CceeeccCCC
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS---PALG--YHYYCRGAGS 64 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~---~~~~--~~~~~~~~~~ 64 (225)
|-...+|+|+.||||||||.+|- .+.| .||..+++++
T Consensus 61 gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsE 102 (450)
T COG1224 61 GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSE 102 (450)
T ss_pred CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccce
Confidence 44567999999999999999994 4444 8999988888
No 91
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=97.54 E-value=4.8e-05 Score=62.91 Aligned_cols=38 Identities=24% Similarity=0.359 Sum_probs=26.1
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~ 53 (225)
+|++.+|.+|.-.... ..++||+||||||||++|+++.
T Consensus 6 ~GQe~aKrAL~iAAaG---------------~h~lLl~GppGtGKTmlA~~l~ 43 (206)
T PF01078_consen 6 VGQEEAKRALEIAAAG---------------GHHLLLIGPPGTGKTMLARRLP 43 (206)
T ss_dssp SSTHHHHHHHHHHHHC---------------C--EEEES-CCCTHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHcC---------------CCCeEEECCCCCCHHHHHHHHH
Confidence 4777777776554443 2599999999999999997433
No 92
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=4.3e-05 Score=70.61 Aligned_cols=38 Identities=29% Similarity=0.524 Sum_probs=28.4
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
+|.+.+.+.|...+.. + ..+..+|||||||||||++|+
T Consensus 21 VGQe~iv~~L~~~i~~-----------~-ri~ha~Lf~GP~GtGKTTlAr 58 (484)
T PRK14956 21 IHQDLAIGALQNALKS-----------G-KIGHAYIFFGPRGVGKTTIAR 58 (484)
T ss_pred hChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHH
Confidence 4677777776666654 1 234579999999999999996
No 93
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.52 E-value=6.6e-05 Score=63.56 Aligned_cols=67 Identities=24% Similarity=0.333 Sum_probs=48.9
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc------cccCCceeeccCCCCCCccchhhh
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS------PALGYHYYCRGAGSNSDKKDDKDK 74 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~------~~~~~~~~~~~~~~~~~~~~~f~~ 74 (225)
+|++.+++.|.+....++ . | .+...+||||+.|||||++++ +.-|..++.+...+-..+-++++.
T Consensus 30 ~Gie~Qk~~l~~Nt~~Fl-------~-G-~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~ 100 (249)
T PF05673_consen 30 IGIERQKEALIENTEQFL-------Q-G-LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDL 100 (249)
T ss_pred cCHHHHHHHHHHHHHHHH-------c-C-CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHH
Confidence 689999999988876643 2 3 467899999999999999997 344577777776664444455554
Q ss_pred hh
Q psy7782 75 KK 76 (225)
Q Consensus 75 a~ 76 (225)
.+
T Consensus 101 l~ 102 (249)
T PF05673_consen 101 LR 102 (249)
T ss_pred Hh
Confidence 33
No 94
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.52 E-value=6.4e-05 Score=73.31 Aligned_cols=53 Identities=28% Similarity=0.414 Sum_probs=35.1
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCC---Cc-eeEEEcCCCCCCCcccc---cccCCceeecc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKP---PK-GVILYGPPGTGKTLPFS---PALGYHYYCRG 61 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~---~~-giLl~GppGtGKT~la~---~~~~~~~~~~~ 61 (225)
+|++++++.|.+.+.. .+.|+.. |. .+||+||||||||.+|+ ...+.+++.+.
T Consensus 457 ~GQ~~ai~~l~~~i~~--------~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d 516 (731)
T TIGR02639 457 FGQDEAIDSLVSSIKR--------SRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFD 516 (731)
T ss_pred eCcHHHHHHHHHHHHH--------HhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEe
Confidence 4777777777777654 2334322 33 47899999999999997 33345555444
No 95
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.51 E-value=4.6e-05 Score=69.18 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=28.8
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
+|.+.+++.|...+.. | ..+.++|||||||||||++|.
T Consensus 19 iGq~~~~~~L~~~~~~-----------~-~~~ha~lf~Gp~G~GKtt~A~ 56 (397)
T PRK14955 19 TAQEHITRTIQNSLRM-----------G-RVGHGYIFSGLRGVGKTTAAR 56 (397)
T ss_pred cChHHHHHHHHHHHHh-----------C-CcceeEEEECCCCCCHHHHHH
Confidence 4777777766665543 2 355789999999999999885
No 96
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.50 E-value=5e-05 Score=71.00 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=30.2
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
+|.+++++.|..++.. + ..+..+|||||||||||++|+
T Consensus 17 vGq~~v~~~L~~~i~~-----------~-~l~ha~Lf~GppGtGKTTlA~ 54 (504)
T PRK14963 17 VGQEHVKEVLLAALRQ-----------G-RLGHAYLFSGPRGVGKTTTAR 54 (504)
T ss_pred cChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHH
Confidence 5888888888877765 1 244567999999999999986
No 97
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.47 E-value=7.9e-05 Score=72.75 Aligned_cols=54 Identities=28% Similarity=0.468 Sum_probs=37.8
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCC----CCCceeEEEcCCCCCCCcccc---cccCCceeeccC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGI----KPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGA 62 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~----~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~ 62 (225)
+|.+++++.|.+.+... ..|+ .|...+||+||||||||.+|+ ...+.+|+.++.
T Consensus 461 iGQ~~ai~~l~~~i~~~--------~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~ 521 (758)
T PRK11034 461 FGQDKAIEALTEAIKMS--------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDM 521 (758)
T ss_pred eCcHHHHHHHHHHHHHH--------hccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeec
Confidence 58888888888888651 1222 234568999999999999996 334566664443
No 98
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.47 E-value=8.2e-05 Score=65.01 Aligned_cols=53 Identities=21% Similarity=0.254 Sum_probs=37.1
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccc---cCCceeeccCCCC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPA---LGYHYYCRGAGSN 65 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~---~~~~~~~~~~~~~ 65 (225)
+|-+++++.+..++.. | ..+..+|||||||+|||++|++. .+.+++.++.+++
T Consensus 24 ~~~~~~~~~l~~~~~~-----------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~ 79 (316)
T PHA02544 24 ILPAADKETFKSIVKK-----------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDC 79 (316)
T ss_pred cCcHHHHHHHHHHHhc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCcc
Confidence 3566677766666542 2 24556777999999999999743 3567788877763
No 99
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.46 E-value=5.9e-05 Score=70.62 Aligned_cols=38 Identities=13% Similarity=0.215 Sum_probs=30.3
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
||.+.+++.|...+.. + ..+..+|||||||||||++|+
T Consensus 19 vGq~~v~~~L~~~~~~-----------~-~l~ha~Lf~Gp~G~GKTt~A~ 56 (509)
T PRK14958 19 IGQAPVVRALSNALDQ-----------Q-YLHHAYLFTGTRGVGKTTISR 56 (509)
T ss_pred cCCHHHHHHHHHHHHh-----------C-CCCeeEEEECCCCCCHHHHHH
Confidence 5888888888877754 1 345688999999999999885
No 100
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.45 E-value=4.1e-05 Score=75.79 Aligned_cols=53 Identities=23% Similarity=0.237 Sum_probs=36.3
Q ss_pred CCceeEEEcCCCCCCCcccccc-------------cCCceeeccCCC---CC--------Cccchhhhh-hcCCCCCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPA-------------LGYHYYCRGAGS---NS--------DKKDDKDKK-KKYEPPIP 83 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~-------------~~~~~~~~~~~~---~~--------~~~~~f~~a-~~~~p~ii 83 (225)
....++|+||||||||++|+.. .+.+++.+..+. |. .++.+|+.+ +...|+|+
T Consensus 198 ~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~IL 275 (857)
T PRK10865 198 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVIL 275 (857)
T ss_pred CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEE
Confidence 4468999999999999998511 267777765554 22 346777764 34567775
No 101
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=6.8e-05 Score=71.64 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=30.4
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
||.+.+++.|..++.. | ..+.++||+||||||||++|+
T Consensus 18 IGQe~vv~~L~~aI~~-----------g-rl~HAyLF~GPpGvGKTTlAr 55 (702)
T PRK14960 18 VGQNHVSRALSSALER-----------G-RLHHAYLFTGTRGVGKTTIAR 55 (702)
T ss_pred cCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHH
Confidence 5788888888777753 2 345789999999999999986
No 102
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=7.3e-05 Score=69.51 Aligned_cols=38 Identities=29% Similarity=0.517 Sum_probs=29.3
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
||.+.+.+.|...+.. | ..+.++||+||||||||++|+
T Consensus 16 iGQe~vv~~L~~a~~~-----------~-ri~ha~Lf~Gp~G~GKTT~Ar 53 (491)
T PRK14964 16 VGQDVLVRILRNAFTL-----------N-KIPQSILLVGASGVGKTTCAR 53 (491)
T ss_pred cCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCccHHHHHH
Confidence 5777777777655544 2 346799999999999999885
No 103
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.40 E-value=8.4e-05 Score=69.46 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=27.6
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
+|.+.+.+.|...+.. + ..+.++||+||||||||++|+
T Consensus 24 iGq~~vv~~L~~ai~~-----------~-ri~~a~Lf~Gp~G~GKTT~Ar 61 (507)
T PRK06645 24 QGQEVLVKVLSYTILN-----------D-RLAGGYLLTGIRGVGKTTSAR 61 (507)
T ss_pred cCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHH
Confidence 4666666665554433 2 345799999999999999986
No 104
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.40 E-value=9.5e-05 Score=63.37 Aligned_cols=33 Identities=27% Similarity=0.175 Sum_probs=26.6
Q ss_pred CceeEEEcCCCCCCCccccc---ccCCceeeccCCC
Q psy7782 32 PKGVILYGPPGTGKTLPFSP---ALGYHYYCRGAGS 64 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~---~~~~~~~~~~~~~ 64 (225)
...+||.||||||||++|++ ..|.+++.++...
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~ 56 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDA 56 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCc
Confidence 46899999999999999973 4577888776554
No 105
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.40 E-value=7.6e-05 Score=73.37 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=29.2
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
||.+.+++.|+.++.. + ..+..+|||||||||||++|+
T Consensus 19 IGQe~Iv~~LknaI~~-----------~-rl~HAyLFtGPpGtGKTTLAR 56 (944)
T PRK14949 19 VGQSHVLHALTNALTQ-----------Q-RLHHAYLFTGTRGVGKTSLAR 56 (944)
T ss_pred cCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHH
Confidence 5777777777766554 1 345678999999999999996
No 106
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.36 E-value=7.8e-05 Score=72.78 Aligned_cols=53 Identities=21% Similarity=0.166 Sum_probs=37.1
Q ss_pred CCceeEEEcCCCCCCCcccccc-------------cCCceeeccCCC---C--------CCccchhhhhhcCCCCCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPA-------------LGYHYYCRGAGS---N--------SDKKDDKDKKKKYEPPIP 83 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~-------------~~~~~~~~~~~~---~--------~~~~~~f~~a~~~~p~ii 83 (225)
....+||+||||||||++|+.. .+..++.+..+. | ...+.+|..+++..|+|+
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~IL 282 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSIL 282 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEE
Confidence 4568899999999999999632 245555544332 1 224678888888888886
No 107
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.35 E-value=0.00013 Score=68.83 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=36.0
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccccC----CceeeccC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPALG----YHYYCRGA 62 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~~----~~~~~~~~ 62 (225)
.||+++++.|-+++..-. ..++ ...+-++|.||||+|||+||+.++. .++|.+.+
T Consensus 79 yGlee~ieriv~~l~~Aa------~gl~-~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 79 YGMEEAIEQIVSYFRHAA------QGLE-EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cCcHHHHHHHHHHHHHHH------HhcC-CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 489999998888774411 1122 2334667999999999999963322 45555543
No 108
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.34 E-value=0.00011 Score=69.21 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=29.3
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
+|.+++++.|...+.. -..+.++|||||||||||++|+
T Consensus 19 vGq~~v~~~L~~~i~~------------~~~~ha~Lf~Gp~G~GKTt~A~ 56 (527)
T PRK14969 19 VGQEHVVRALTNALEQ------------QRLHHAYLFTGTRGVGKTTLAR 56 (527)
T ss_pred cCcHHHHHHHHHHHHc------------CCCCEEEEEECCCCCCHHHHHH
Confidence 5777777777766654 1345678999999999999885
No 109
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.33 E-value=0.00011 Score=69.75 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=28.4
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
+|.+.+++.|...+.. + ..+.++|||||||||||++|+
T Consensus 19 IGQe~iv~~L~~aI~~-----------~-rl~hA~Lf~GP~GvGKTTlA~ 56 (605)
T PRK05896 19 IGQELIKKILVNAILN-----------N-KLTHAYIFSGPRGIGKTSIAK 56 (605)
T ss_pred cCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHH
Confidence 4667777766665533 2 345789999999999999985
No 110
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.33 E-value=0.00012 Score=60.73 Aligned_cols=23 Identities=30% Similarity=0.496 Sum_probs=19.5
Q ss_pred CCCceeEEEcCCCCCCCcccccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~ 52 (225)
.....++|+||||||||++|++.
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~ 58 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAA 58 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHH
Confidence 34679999999999999999743
No 111
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.33 E-value=0.00011 Score=69.26 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=28.4
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
||.+.+++.|...+.. + ..+..+|||||||||||++|+
T Consensus 19 iGq~~~v~~L~~~i~~-----------~-rl~ha~Lf~Gp~GvGKTTlAr 56 (546)
T PRK14957 19 AGQQHALNSLVHALET-----------Q-KVHHAYLFTGTRGVGKTTLGR 56 (546)
T ss_pred cCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHH
Confidence 4677777766665543 1 345679999999999999986
No 112
>KOG0741|consensus
Probab=97.32 E-value=6.4e-05 Score=69.63 Aligned_cols=54 Identities=24% Similarity=0.257 Sum_probs=42.5
Q ss_pred CCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC---C-------CCccchhhhhhcCCCCCC
Q psy7782 30 KPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS---N-------SDKKDDKDKKKKYEPPIP 83 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~---~-------~~~~~~f~~a~~~~p~ii 83 (225)
.+...+||+||||+|||.||+ ..++.||+-+-..+ | ..++.+|+.|.+..-+||
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsii 602 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSII 602 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEE
Confidence 566899999999999999997 55779999765554 2 224799999988777665
No 113
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.28 E-value=0.00013 Score=64.54 Aligned_cols=38 Identities=26% Similarity=0.462 Sum_probs=29.4
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
+|.+++++.|.+.+.. | ..+..+|||||||+|||++|+
T Consensus 17 ig~~~~~~~l~~~~~~-----------~-~~~~~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 17 IGQEHIVQTLKNAIKN-----------G-RIAHAYLFSGPRGTGKTSIAR 54 (355)
T ss_pred cCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHH
Confidence 5777888877776643 2 345689999999999999985
No 114
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.27 E-value=0.00013 Score=69.38 Aligned_cols=38 Identities=18% Similarity=0.386 Sum_probs=29.6
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
+|.+.+++.|+.++.. | ..+..+|||||+|||||++|+
T Consensus 16 vGq~~i~~~L~~~i~~-----------~-r~~ha~Lf~Gp~G~GKTt~A~ 53 (584)
T PRK14952 16 VGQEHVTEPLSSALDA-----------G-RINHAYLFSGPRGCGKTSSAR 53 (584)
T ss_pred cCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHH
Confidence 5777888877777654 2 345678999999999999885
No 115
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.27 E-value=0.00013 Score=70.94 Aligned_cols=44 Identities=32% Similarity=0.454 Sum_probs=30.0
Q ss_pred CceeEEEcCCCCCCCcccccc---cCCceeeccCCC-C-CCccchhhhh
Q psy7782 32 PKGVILYGPPGTGKTLPFSPA---LGYHYYCRGAGS-N-SDKKDDKDKK 75 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~---~~~~~~~~~~~~-~-~~~~~~f~~a 75 (225)
..++|||||||||||++|++. .+.+|+.++... + ..+++.+..+
T Consensus 52 ~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i~dir~~i~~a 100 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAEVDRA 100 (725)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhhHHHHHHHHHH
Confidence 358999999999999999743 456676666554 2 3344555544
No 116
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.27 E-value=0.00013 Score=70.03 Aligned_cols=38 Identities=18% Similarity=0.364 Sum_probs=30.9
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
||.+.+++.|...+.. + ..+.++|||||||||||++|+
T Consensus 19 IGQe~vv~~L~~ai~~-----------~-rl~Ha~Lf~GP~GvGKTTlAr 56 (709)
T PRK08691 19 VGQEHVVKALQNALDE-----------G-RLHHAYLLTGTRGVGKTTIAR 56 (709)
T ss_pred cCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCcHHHHHH
Confidence 5788888888887765 1 345789999999999999985
No 117
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.26 E-value=0.00012 Score=72.43 Aligned_cols=53 Identities=25% Similarity=0.210 Sum_probs=35.6
Q ss_pred CCceeEEEcCCCCCCCcccccc-------------cCCceeeccCCC---C--------CCccchhhhhhc-CCCCCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPA-------------LGYHYYCRGAGS---N--------SDKKDDKDKKKK-YEPPIP 83 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~-------------~~~~~~~~~~~~---~--------~~~~~~f~~a~~-~~p~ii 83 (225)
...+++|+||||||||++|+.. .+..++.+..+. | ..++++|+.++. ..++|+
T Consensus 207 ~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~IL 284 (852)
T TIGR03345 207 RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIIL 284 (852)
T ss_pred CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEE
Confidence 4468999999999999998622 235566554443 1 244678887765 356775
No 118
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=97.25 E-value=0.00014 Score=64.65 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=27.8
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccccC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
+|.+++++.+.-.... ....++||+||||||||++|++.++
T Consensus 11 ~Gq~~~~~~l~~~~~~-------------~~~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 11 VGQEEMKQAMVLTAID-------------PGIGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred CCHHHHHHHHHHHHhc-------------cCCCcEEEEcCCCCCHHHHHHHHHH
Confidence 4666666655543322 1125899999999999999975433
No 119
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.24 E-value=0.00015 Score=69.30 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=28.7
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
+|.+.+++.|+..+.. | ..+.++|||||||||||++|+
T Consensus 19 vGQe~i~~~L~~~i~~-----------~-ri~ha~Lf~Gp~GvGKttlA~ 56 (620)
T PRK14954 19 TAQEHITHTIQNSLRM-----------D-RVGHGYIFSGLRGVGKTTAAR 56 (620)
T ss_pred cCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHH
Confidence 4677777776665443 2 455789999999999999985
No 120
>PRK06620 hypothetical protein; Validated
Probab=97.23 E-value=6.9e-05 Score=62.45 Aligned_cols=20 Identities=25% Similarity=0.320 Sum_probs=18.0
Q ss_pred ceeEEEcCCCCCCCcccccc
Q psy7782 33 KGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~ 52 (225)
+.++||||||||||+|+++.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~ 64 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIW 64 (214)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 78999999999999999743
No 121
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.23 E-value=0.00018 Score=68.77 Aligned_cols=18 Identities=39% Similarity=0.787 Sum_probs=16.8
Q ss_pred ceeEEEcCCCCCCCcccc
Q psy7782 33 KGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~ 50 (225)
++++|+||||||||++|+
T Consensus 38 ~~~ll~G~pG~GKT~la~ 55 (608)
T TIGR00764 38 RNVLLIGEPGVGKSMLAK 55 (608)
T ss_pred CCEEEECCCCCCHHHHHH
Confidence 489999999999999997
No 122
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.22 E-value=0.00015 Score=63.11 Aligned_cols=39 Identities=26% Similarity=0.390 Sum_probs=26.9
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~ 52 (225)
+|.+++++.+..++.. + ...++|||||||||||++++..
T Consensus 20 ~g~~~~~~~l~~~i~~-----------~--~~~~~ll~G~~G~GKt~~~~~l 58 (319)
T PRK00440 20 VGQEEIVERLKSYVKE-----------K--NMPHLLFAGPPGTGKTTAALAL 58 (319)
T ss_pred cCcHHHHHHHHHHHhC-----------C--CCCeEEEECCCCCCHHHHHHHH
Confidence 3566666666666533 1 1235899999999999999633
No 123
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.22 E-value=0.00013 Score=57.58 Aligned_cols=31 Identities=26% Similarity=0.358 Sum_probs=24.8
Q ss_pred CCCceeEEEcCCCCCCCcccc---cccCCceeec
Q psy7782 30 KPPKGVILYGPPGTGKTLPFS---PALGYHYYCR 60 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~---~~~~~~~~~~ 60 (225)
.++..|+|+||||||||++|+ ...|.++++.
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 456789999999999999997 4456777754
No 124
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.22 E-value=0.00019 Score=66.33 Aligned_cols=38 Identities=21% Similarity=0.379 Sum_probs=29.9
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
||.+++++.|...+.. | ..+..+|||||||||||++|+
T Consensus 20 iGq~~~v~~L~~~i~~-----------~-~i~ha~Lf~Gp~G~GKtt~A~ 57 (451)
T PRK06305 20 LGQDAVVAVLKNALRF-----------N-RAAHAYLFSGIRGTGKTTLAR 57 (451)
T ss_pred cCcHHHHHHHHHHHHc-----------C-CCceEEEEEcCCCCCHHHHHH
Confidence 5778888777777654 2 345789999999999999885
No 125
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.21 E-value=6.9e-05 Score=66.12 Aligned_cols=36 Identities=22% Similarity=0.269 Sum_probs=29.8
Q ss_pred CCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS 64 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~ 64 (225)
+...+.+||.||||||||++|+ +..|.+++.++...
T Consensus 61 l~~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~ 99 (327)
T TIGR01650 61 FAYDRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDS 99 (327)
T ss_pred HhcCCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecC
Confidence 3456899999999999999997 56778888777666
No 126
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.21 E-value=0.00019 Score=64.24 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=28.4
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
+|.+++++.+...+.. | ..+.++|||||||+|||++|.
T Consensus 20 ig~~~~~~~l~~~i~~-----------~-~~~~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 20 VGQSHITNTLLNAIEN-----------N-HLAQALLFCGPRGVGKTTCAR 57 (367)
T ss_pred CCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHH
Confidence 4666666666666644 2 345799999999999999885
No 127
>PRK06893 DNA replication initiation factor; Validated
Probab=97.21 E-value=6.1e-05 Score=63.25 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=17.6
Q ss_pred ceeEEEcCCCCCCCccccccc
Q psy7782 33 KGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~ 53 (225)
..++||||||||||+|+.+++
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~ 60 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVS 60 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 357999999999999997544
No 128
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.20 E-value=0.00018 Score=69.50 Aligned_cols=38 Identities=29% Similarity=0.414 Sum_probs=30.2
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
+|.+.+++.|...+.. | ..+.++|||||||||||++|+
T Consensus 21 iGQe~~v~~L~~aI~~-----------~-rl~HAYLF~GP~GtGKTt~Ar 58 (725)
T PRK07133 21 VGQDHIVQTLKNIIKS-----------N-KISHAYLFSGPRGTGKTSVAK 58 (725)
T ss_pred cCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCcHHHHHH
Confidence 5778888877777765 1 345789999999999999986
No 129
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.19 E-value=0.00022 Score=63.45 Aligned_cols=41 Identities=37% Similarity=0.541 Sum_probs=28.3
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~ 51 (225)
|-++.++.|..++...+. | ..+..+++|||||||||+++++
T Consensus 19 gRe~e~~~l~~~l~~~~~--------~-~~~~~i~I~G~~GtGKT~l~~~ 59 (365)
T TIGR02928 19 HRDEQIEELAKALRPILR--------G-SRPSNVFIYGKTGTGKTAVTKY 59 (365)
T ss_pred CcHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHH
Confidence 456666666666643111 2 3446899999999999999963
No 130
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.19 E-value=0.00018 Score=68.79 Aligned_cols=38 Identities=16% Similarity=0.280 Sum_probs=30.8
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
||.+++++.|...+.. + ..+..+||+||+|||||++|+
T Consensus 19 IGQe~vv~~L~~al~~-----------g-RLpHA~LFtGP~GvGKTTLAr 56 (700)
T PRK12323 19 VGQEHVVRALTHALEQ-----------Q-RLHHAYLFTGTRGVGKTTLSR 56 (700)
T ss_pred cCcHHHHHHHHHHHHh-----------C-CCceEEEEECCCCCCHHHHHH
Confidence 6888888888887765 1 345688999999999999985
No 131
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.18 E-value=0.00026 Score=66.72 Aligned_cols=33 Identities=42% Similarity=0.682 Sum_probs=25.3
Q ss_pred CCceeEEEcCCCCCCCccccccc-------------CCceeeccCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPAL-------------GYHYYCRGAG 63 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~-------------~~~~~~~~~~ 63 (225)
.+.++|||||||||||++|++.. +.+|+.++..
T Consensus 85 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~ 130 (531)
T TIGR02902 85 NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDAT 130 (531)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccc
Confidence 35789999999999999997431 3567777654
No 132
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.17 E-value=8.1e-05 Score=55.55 Aligned_cols=26 Identities=35% Similarity=0.678 Sum_probs=19.6
Q ss_pred eEEEcCCCCCCCcccccc---cCCceeec
Q psy7782 35 VILYGPPGTGKTLPFSPA---LGYHYYCR 60 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~---~~~~~~~~ 60 (225)
|++.||||+||||+|+.. .|.+++++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~ 30 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISM 30 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEe
Confidence 689999999999999733 35555433
No 133
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.16 E-value=0.00022 Score=67.59 Aligned_cols=38 Identities=26% Similarity=0.456 Sum_probs=30.2
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
+|.+++.+.|+..+.. + ..+..+|||||+|||||++|+
T Consensus 19 iGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~GtGKTt~Ak 56 (559)
T PRK05563 19 VGQEHITKTLKNAIKQ-----------G-KISHAYLFSGPRGTGKTSAAK 56 (559)
T ss_pred cCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHH
Confidence 5778888888777665 1 345789999999999999885
No 134
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.16 E-value=7.4e-05 Score=60.48 Aligned_cols=60 Identities=27% Similarity=0.389 Sum_probs=33.0
Q ss_pred CCCceeEEEcCCCCCCCcccccc------cCCceeeccCCC---------C-CCccchhhhhhcCCCCC-Cccccccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPA------LGYHYYCRGAGS---------N-SDKKDDKDKKKKYEPPI-PTRVGKKK 90 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~------~~~~~~~~~~~~---------~-~~~~~~f~~a~~~~p~i-id~igk~r 90 (225)
....|++|+||||||||++|.++ .|..++.++..+ . .+..+.++.... .+.+ ||-+|..+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~-~dlLilDDlG~~~ 121 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR-VDLLILDDLGYEP 121 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT-SSCEEEETCTSS-
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc-ccEecccccceee
Confidence 45689999999999999999633 345555444333 1 122333443333 3444 48887554
No 135
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.14 E-value=0.00021 Score=67.99 Aligned_cols=38 Identities=21% Similarity=0.453 Sum_probs=29.6
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
||.+++++.|...+.. + ..+..+|||||||||||++|+
T Consensus 19 iGq~~~~~~L~~~i~~-----------~-~i~~a~Lf~Gp~G~GKTtlA~ 56 (585)
T PRK14950 19 VGQEHVVQTLRNAIAE-----------G-RVAHAYLFTGPRGVGKTSTAR 56 (585)
T ss_pred cCCHHHHHHHHHHHHh-----------C-CCceEEEEECCCCCCHHHHHH
Confidence 5788888887776654 1 234578999999999999986
No 136
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.14 E-value=0.00023 Score=66.27 Aligned_cols=38 Identities=29% Similarity=0.496 Sum_probs=29.1
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
+|.+.+.+.|...+.. + ..+..+|||||||||||++|+
T Consensus 19 iGq~~i~~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTtlAr 56 (486)
T PRK14953 19 IGQEIVVRILKNAVKL-----------Q-RVSHAYIFAGPRGTGKTTIAR 56 (486)
T ss_pred cChHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHH
Confidence 5777777777776644 1 344678999999999999986
No 137
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.13 E-value=0.00021 Score=68.09 Aligned_cols=38 Identities=21% Similarity=0.420 Sum_probs=30.2
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
||.+.+++.|...+.. | ..+.++|||||+|+|||++|+
T Consensus 27 iGq~~~v~~L~~~~~~-----------g-ri~ha~L~~Gp~GvGKTt~Ar 64 (598)
T PRK09111 27 IGQEAMVRTLTNAFET-----------G-RIAQAFMLTGVRGVGKTTTAR 64 (598)
T ss_pred cCcHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHH
Confidence 5777788777776654 2 346799999999999999986
No 138
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.13 E-value=0.00022 Score=69.06 Aligned_cols=38 Identities=16% Similarity=0.314 Sum_probs=30.1
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
||.+++++.|..++.. + ..+..+|||||+|||||++|+
T Consensus 19 IGQe~Vv~~L~~aL~~-----------g-RL~HAyLFtGPpGvGKTTlAr 56 (830)
T PRK07003 19 VGQEHVVRALTHALDG-----------G-RLHHAYLFTGTRGVGKTTLSR 56 (830)
T ss_pred cCcHHHHHHHHHHHhc-----------C-CCCeEEEEECCCCCCHHHHHH
Confidence 5788888888777654 2 345688999999999999885
No 139
>PRK06526 transposase; Provisional
Probab=97.12 E-value=0.00011 Score=62.92 Aligned_cols=21 Identities=43% Similarity=0.654 Sum_probs=18.3
Q ss_pred CCceeEEEcCCCCCCCccccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~ 51 (225)
...+++|+||||||||++|.+
T Consensus 97 ~~~nlll~Gp~GtGKThLa~a 117 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIG 117 (254)
T ss_pred cCceEEEEeCCCCchHHHHHH
Confidence 356999999999999999963
No 140
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.11 E-value=0.00023 Score=67.71 Aligned_cols=38 Identities=16% Similarity=0.353 Sum_probs=30.6
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
+|.+++++.|...+.. | ..+..+|||||||||||++|+
T Consensus 19 iGq~~v~~~L~~~i~~-----------~-~~~hayLf~Gp~G~GKtt~A~ 56 (576)
T PRK14965 19 TGQEHVSRTLQNAIDT-----------G-RVAHAFLFTGARGVGKTSTAR 56 (576)
T ss_pred cCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHH
Confidence 5788888888877654 2 345788999999999999885
No 141
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.11 E-value=0.00018 Score=60.20 Aligned_cols=25 Identities=40% Similarity=0.652 Sum_probs=21.2
Q ss_pred CceeEEEcCCCCCCCcccccccCCc
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~ 56 (225)
+.-+|+||+||+|||++|+..++.+
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~~ 36 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGKT 36 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCCC
Confidence 4569999999999999998777633
No 142
>PRK12377 putative replication protein; Provisional
Probab=97.10 E-value=9.7e-05 Score=62.97 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=18.5
Q ss_pred CceeEEEcCCCCCCCccccccc
Q psy7782 32 PKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~ 53 (225)
..+++|+||||||||+||.+++
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa 122 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIG 122 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999996433
No 143
>PHA02244 ATPase-like protein
Probab=97.09 E-value=0.00015 Score=65.07 Aligned_cols=32 Identities=28% Similarity=0.388 Sum_probs=25.9
Q ss_pred CCCceeEEEcCCCCCCCcccc---cccCCceeecc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFS---PALGYHYYCRG 61 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~ 61 (225)
.....+||+||||||||++|+ +..+.+|+.++
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In 151 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMN 151 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 345789999999999999997 44678888665
No 144
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.09 E-value=0.00027 Score=67.55 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=29.7
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
||.+.+++.|...+.. + ..+..+|||||+|||||++|+
T Consensus 19 iGQe~vv~~L~~~l~~-----------~-rl~ha~Lf~Gp~GvGKTtlAr 56 (618)
T PRK14951 19 VGQEHVVQALTNALTQ-----------Q-RLHHAYLFTGTRGVGKTTVSR 56 (618)
T ss_pred cCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHH
Confidence 5777888777776655 1 345688999999999999986
No 145
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.09 E-value=0.00026 Score=67.83 Aligned_cols=38 Identities=18% Similarity=0.373 Sum_probs=29.3
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
||.+.+++.|...+.. | ..+..+|||||||||||++|+
T Consensus 19 vGQe~vv~~L~~~l~~-----------~-rl~hAyLf~Gp~GvGKTTlAr 56 (647)
T PRK07994 19 VGQEHVLTALANALDL-----------G-RLHHAYLFSGTRGVGKTTIAR 56 (647)
T ss_pred cCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHH
Confidence 5777888777766654 2 345678999999999999986
No 146
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.08 E-value=0.00011 Score=64.43 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=19.1
Q ss_pred CCceeEEEcCCCCCCCcccccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~ 52 (225)
..+|++||||||||||+|+.++
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Ai 176 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAI 176 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 4579999999999999999644
No 147
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.08 E-value=0.00023 Score=70.59 Aligned_cols=53 Identities=21% Similarity=0.198 Sum_probs=36.3
Q ss_pred CCceeEEEcCCCCCCCccccc-------------ccCCceeeccCCC---C--------CCccchhhhhhcC-CCCCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSP-------------ALGYHYYCRGAGS---N--------SDKKDDKDKKKKY-EPPIP 83 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~-------------~~~~~~~~~~~~~---~--------~~~~~~f~~a~~~-~p~ii 83 (225)
....++|+||||||||+++.. ..+.+++.+..+. | ..++.+|+.+... .|+|+
T Consensus 193 ~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~IL 270 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIIL 270 (852)
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEE
Confidence 456889999999999999851 1356677665443 2 2346778777554 57775
No 148
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.07 E-value=0.00033 Score=67.13 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=29.3
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
+|.+++++.|...+.. + ....++|||||||||||++|+
T Consensus 19 iGq~~i~~~L~~~l~~-----------~-rl~~a~Lf~Gp~G~GKttlA~ 56 (620)
T PRK14948 19 VGQEAIATTLKNALIS-----------N-RIAPAYLFTGPRGTGKTSSAR 56 (620)
T ss_pred cChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCChHHHHH
Confidence 5777788777777765 1 133589999999999999985
No 149
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.07 E-value=0.00013 Score=60.77 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=19.4
Q ss_pred CCCceeEEEcCCCCCCCcccccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~ 52 (225)
....+++|+||||||||++|++.
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai 62 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQAL 62 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHH
Confidence 45578999999999999999743
No 150
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.05 E-value=0.0003 Score=66.61 Aligned_cols=38 Identities=32% Similarity=0.454 Sum_probs=30.3
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
+|.+.+++.|+..+.. | ..+..+|||||||+|||++|+
T Consensus 19 iGqe~iv~~L~~~i~~-----------~-~i~hayLf~Gp~G~GKTt~Ar 56 (563)
T PRK06647 19 EGQDFVVETLKHSIES-----------N-KIANAYIFSGPRGVGKTSSAR 56 (563)
T ss_pred cCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHH
Confidence 5788888887777754 2 245689999999999999886
No 151
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=97.05 E-value=0.00034 Score=62.49 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=30.3
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~ 51 (225)
+|++++|.+|.-....| ...|+||+||+|||||++|+.
T Consensus 20 vGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~ 57 (350)
T CHL00081 20 VGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRA 57 (350)
T ss_pred hChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHH
Confidence 58888888777666652 235999999999999999973
No 152
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.04 E-value=0.00011 Score=62.76 Aligned_cols=61 Identities=26% Similarity=0.255 Sum_probs=38.9
Q ss_pred CCceeEEEcCCCCCCCccccc------ccCCceeeccCCCC-CCccchhhh-------hh--cCCCC-CCcccccccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFSP------ALGYHYYCRGAGSN-SDKKDDKDK-------KK--KYEPP-IPTRVGKKKR 91 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~------~~~~~~~~~~~~~~-~~~~~~f~~-------a~--~~~p~-iid~igk~r~ 91 (225)
...+++||||||+|||+||.+ ..|..++.++..+. +.++..|.. .+ ...+- |||-+|.-..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~ 181 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPF 181 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCccC
Confidence 567999999999999999953 34577777777773 333332221 12 22333 3488887654
No 153
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.03 E-value=0.00016 Score=60.95 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=17.9
Q ss_pred CceeEEEcCCCCCCCcccccc
Q psy7782 32 PKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~ 52 (225)
...++||||||||||+++.+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~ 65 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAA 65 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 358999999999999998643
No 154
>PRK08181 transposase; Validated
Probab=97.02 E-value=0.00014 Score=62.68 Aligned_cols=33 Identities=24% Similarity=0.495 Sum_probs=23.8
Q ss_pred CCceeEEEcCCCCCCCcccccc------cCCceeeccCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPA------LGYHYYCRGAG 63 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~------~~~~~~~~~~~ 63 (225)
...+++|+||||||||+||.++ .|..++.++..
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~ 143 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTT 143 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHH
Confidence 4578999999999999999643 34455544443
No 155
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.02 E-value=0.00018 Score=53.25 Aligned_cols=50 Identities=24% Similarity=0.407 Sum_probs=30.1
Q ss_pred eEEEcCCCCCCCccccccc-----------CCceeeccCCCCCCccchhhhhhcCCCCCC-ccccccc
Q psy7782 35 VILYGPPGTGKTLPFSPAL-----------GYHYYCRGAGSNSDKKDDKDKKKKYEPPIP-TRVGKKK 90 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~~-----------~~~~~~~~~~~~~~~~~~f~~a~~~~p~ii-d~igk~r 90 (225)
|.||||||||||++|...+ ...++....++ -|-.--..+|+++ |-++...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~------~~w~gY~~q~vvi~DD~~~~~ 62 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGD------KFWDGYQGQPVVIIDDFGQDN 62 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCcc------chhhccCCCcEEEEeecCccc
Confidence 5799999999999997422 23333333333 2333333567776 6666554
No 156
>PRK08118 topology modulation protein; Reviewed
Probab=97.01 E-value=0.00022 Score=57.07 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=22.8
Q ss_pred ceeEEEcCCCCCCCcccc---cccCCceeecc
Q psy7782 33 KGVILYGPPGTGKTLPFS---PALGYHYYCRG 61 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~---~~~~~~~~~~~ 61 (225)
+.|++.||||+||||+|+ ...+.+++++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD 33 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLD 33 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecc
Confidence 368999999999999997 45567766553
No 157
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.99 E-value=0.00022 Score=63.29 Aligned_cols=32 Identities=31% Similarity=0.461 Sum_probs=23.4
Q ss_pred ceeEEEcCCCCCCCccccccc------CCceeeccCCC
Q psy7782 33 KGVILYGPPGTGKTLPFSPAL------GYHYYCRGAGS 64 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~------~~~~~~~~~~~ 64 (225)
.+++||||||||||+||.+++ |..++.++..+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~ 221 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADE 221 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHH
Confidence 799999999999999996443 34455444443
No 158
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.96 E-value=0.00042 Score=68.70 Aligned_cols=43 Identities=30% Similarity=0.560 Sum_probs=31.8
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCC---CCce-eEEEcCCCCCCCccccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIK---PPKG-VILYGPPGTGKTLPFSP 51 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~---~~~g-iLl~GppGtGKT~la~~ 51 (225)
+|.++..+.+.+.+... +.|+. .|.| +||+||||||||.+|++
T Consensus 569 ~GQ~~Av~~v~~~i~~~--------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~ 615 (852)
T TIGR03345 569 IGQDHALEAIAERIRTA--------RAGLEDPRKPLGVFLLVGPSGVGKTETALA 615 (852)
T ss_pred cChHHHHHHHHHHHHHH--------hcCCCCCCCCceEEEEECCCCCCHHHHHHH
Confidence 58888888888888652 12222 2445 79999999999999963
No 159
>PRK06921 hypothetical protein; Provisional
Probab=96.95 E-value=0.00026 Score=60.93 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=18.7
Q ss_pred CCceeEEEcCCCCCCCcccccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~ 52 (225)
...+++|+||||||||+|+.++
T Consensus 116 ~~~~l~l~G~~G~GKThLa~ai 137 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAA 137 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHH
Confidence 3578999999999999998643
No 160
>PRK08116 hypothetical protein; Validated
Probab=96.95 E-value=0.00015 Score=62.42 Aligned_cols=34 Identities=26% Similarity=0.294 Sum_probs=24.8
Q ss_pred CCceeEEEcCCCCCCCcccccc------cCCceeeccCCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPA------LGYHYYCRGAGS 64 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~------~~~~~~~~~~~~ 64 (225)
...|++||||||||||+||.++ .+.+++.++..+
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ 152 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQ 152 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 3468999999999999999643 245666555443
No 161
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.94 E-value=0.00042 Score=68.28 Aligned_cols=38 Identities=18% Similarity=0.384 Sum_probs=28.6
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
||.+.+++.|...+.. + ..+..+|||||+|||||++|+
T Consensus 18 iGqe~v~~~L~~~i~~-----------~-ri~Ha~Lf~Gp~G~GKTt~A~ 55 (824)
T PRK07764 18 IGQEHVTEPLSTALDS-----------G-RINHAYLFSGPRGCGKTSSAR 55 (824)
T ss_pred cCcHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHH
Confidence 5777777777666654 2 344678999999999999885
No 162
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.92 E-value=0.00052 Score=67.87 Aligned_cols=43 Identities=21% Similarity=0.471 Sum_probs=31.0
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCC----CCCceeEEEcCCCCCCCccccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGI----KPPKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~----~~~~giLl~GppGtGKT~la~~ 51 (225)
+|.+++++.|...+.. .+.|+ .|...+||+||||||||.+|++
T Consensus 512 ~GQ~~ai~~l~~~i~~--------~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~ 558 (821)
T CHL00095 512 IGQDEAVVAVSKAIRR--------ARVGLKNPNRPIASFLFSGPTGVGKTELTKA 558 (821)
T ss_pred cChHHHHHHHHHHHHH--------HhhcccCCCCCceEEEEECCCCCcHHHHHHH
Confidence 5888888888887765 12222 2233579999999999999973
No 163
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.00038 Score=61.48 Aligned_cols=61 Identities=20% Similarity=0.254 Sum_probs=43.7
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCC-CCCceeEEEcCCCCCCCcccc---cccCCceeecc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGI-KPPKGVILYGPPGTGKTLPFS---PALGYHYYCRG 61 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~-~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~ 61 (225)
||.++.|+.+.-.+.-.++...+-..+.- -.|+.||..||.|.|||-+|+ ..+|+||+-+-
T Consensus 18 IGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVE 82 (444)
T COG1220 18 IGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVE 82 (444)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 57888888777666554433333333322 258999999999999999997 67889999553
No 164
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.90 E-value=0.001 Score=50.84 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCcee--EEEcCCCCCCCcccc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGV--ILYGPPGTGKTLPFS 50 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~gi--Ll~GppGtGKT~la~ 50 (225)
|..-+.+.+...+...+..+ .+.+.+ -||||||||||.+++
T Consensus 29 GQhla~~~v~~ai~~~l~~~--------~p~KpLVlSfHG~tGtGKn~v~~ 71 (127)
T PF06309_consen 29 GQHLAVEVVVNAIKGHLANP--------NPRKPLVLSFHGWTGTGKNFVSR 71 (127)
T ss_pred CcHHHHHHHHHHHHHHHcCC--------CCCCCEEEEeecCCCCcHHHHHH
Confidence 55555666666665534222 344444 499999999999886
No 165
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.89 E-value=0.00047 Score=65.78 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=28.1
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
||.+.+++.|...+.. + ..+..+|||||||||||++|+
T Consensus 19 iGQe~v~~~L~~ai~~-----------~-ri~ha~Lf~GPpG~GKTtiAr 56 (624)
T PRK14959 19 AGQETVKAILSRAAQE-----------N-RVAPAYLFSGTRGVGKTTIAR 56 (624)
T ss_pred cCCHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHH
Confidence 4667777766666654 1 224589999999999999985
No 166
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.88 E-value=0.00064 Score=54.55 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=26.9
Q ss_pred CCCceeEEEcCCCCCCCccccc------ccCCceeeccCCC
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSP------ALGYHYYCRGAGS 64 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~------~~~~~~~~~~~~~ 64 (225)
..+..|||+|++||||+++|++ -.+.||+.++.+.
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~ 60 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAA 60 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTT
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhh
Confidence 3457999999999999999972 2457899988877
No 167
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.87 E-value=0.00042 Score=55.11 Aligned_cols=39 Identities=21% Similarity=0.460 Sum_probs=21.4
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
|=++..+.|...+.. ..-..++.++++||||+|||++.+
T Consensus 4 gR~~e~~~l~~~l~~----------~~~~~~~~~ll~G~~G~GKT~ll~ 42 (185)
T PF13191_consen 4 GREEEIERLRDLLDA----------AQSGSPRNLLLTGESGSGKTSLLR 42 (185)
T ss_dssp T-HHHHHHHHHTTGG----------TSS-----EEE-B-TTSSHHHHHH
T ss_pred CHHHHHHHHHHHHHH----------HHcCCCcEEEEECCCCCCHHHHHH
Confidence 445566666655531 112345899999999999999985
No 168
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.85 E-value=0.00023 Score=54.46 Aligned_cols=19 Identities=42% Similarity=0.749 Sum_probs=16.3
Q ss_pred eEEEcCCCCCCCccccccc
Q psy7782 35 VILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~~ 53 (225)
+++.||||+|||++|+..+
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999997433
No 169
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.85 E-value=0.00072 Score=63.44 Aligned_cols=20 Identities=40% Similarity=0.732 Sum_probs=16.3
Q ss_pred CCceeEEEcCCCCCCCcccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~ 50 (225)
+.+=+||+||||||||++++
T Consensus 44 ~~~iLlLtGP~G~GKtttv~ 63 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVK 63 (519)
T ss_pred CcceEEEECCCCCCHHHHHH
Confidence 34556789999999999875
No 170
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.84 E-value=0.001 Score=59.79 Aligned_cols=34 Identities=35% Similarity=0.620 Sum_probs=24.6
Q ss_pred CCceeEEEcCCCCCCCccccccc--------CCceeeccCCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPAL--------GYHYYCRGAGS 64 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~--------~~~~~~~~~~~ 64 (225)
.+..+++|||||||||++++..+ +..++.++...
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~ 95 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQI 95 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCc
Confidence 34679999999999999996332 35566665544
No 171
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.84 E-value=0.00031 Score=65.04 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=19.8
Q ss_pred CCCceeEEEcCCCCCCCcccccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~ 52 (225)
.....+||+||||||||++|++.
T Consensus 37 lag~hVLL~GpPGTGKT~LAraL 59 (498)
T PRK13531 37 LSGESVFLLGPPGIAKSLIARRL 59 (498)
T ss_pred ccCCCEEEECCCChhHHHHHHHH
Confidence 45689999999999999999743
No 172
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.83 E-value=0.00044 Score=63.53 Aligned_cols=20 Identities=50% Similarity=0.803 Sum_probs=18.4
Q ss_pred CCceeEEEcCCCCCCCcccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~ 50 (225)
..+.++|+||||||||++|+
T Consensus 193 ~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 193 IKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred cCCCEEEECCCCCCHHHHHH
Confidence 46899999999999999996
No 173
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.82 E-value=0.00027 Score=60.09 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=23.3
Q ss_pred ceeEEEcCCCCCCCccccccc------CCceeeccCCC
Q psy7782 33 KGVILYGPPGTGKTLPFSPAL------GYHYYCRGAGS 64 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~------~~~~~~~~~~~ 64 (225)
.+++|+||||||||+|+.+++ |..++.++.++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~ 137 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVAD 137 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHH
Confidence 589999999999999986333 45555554444
No 174
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.82 E-value=0.00063 Score=63.97 Aligned_cols=38 Identities=13% Similarity=0.242 Sum_probs=29.9
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
+|.+.+++.|...+.. | ..+..+|||||||||||++|+
T Consensus 17 iGqe~v~~~L~~~I~~-----------g-rl~hayLf~Gp~G~GKTt~Ar 54 (535)
T PRK08451 17 IGQESVSKTLSLALDN-----------N-RLAHAYLFSGLRGSGKTSSAR 54 (535)
T ss_pred cCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCcHHHHHH
Confidence 5778888877777654 2 345678999999999999886
No 175
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.81 E-value=0.00027 Score=56.70 Aligned_cols=18 Identities=33% Similarity=0.612 Sum_probs=15.8
Q ss_pred eEEEcCCCCCCCcccccc
Q psy7782 35 VILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~ 52 (225)
|+++||||+|||++|+..
T Consensus 2 i~i~G~pGsGKst~a~~l 19 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKI 19 (183)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999999743
No 176
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.80 E-value=0.00076 Score=60.64 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=30.6
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
+|.+++++.|...+.. | ..+.++||+||+|+||+++|.
T Consensus 22 iGq~~~~~~L~~~~~~-----------~-rl~HA~Lf~Gp~G~GK~~lA~ 59 (365)
T PRK07471 22 FGHAAAEAALLDAYRS-----------G-RLHHAWLIGGPQGIGKATLAY 59 (365)
T ss_pred cChHHHHHHHHHHHHc-----------C-CCCceEEEECCCCCCHHHHHH
Confidence 5778888888776665 2 456789999999999999985
No 177
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.78 E-value=0.00066 Score=67.41 Aligned_cols=45 Identities=18% Similarity=0.420 Sum_probs=30.8
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCC----CCceeEEEcCCCCCCCccccccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIK----PPKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~----~~~giLl~GppGtGKT~la~~~~ 53 (225)
+|.+.+.+.|.+.+.. ...|+. |...+||+||||||||++|++++
T Consensus 571 iGQ~~ai~~l~~~i~~--------~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa 619 (857)
T PRK10865 571 IGQNEAVEAVSNAIRR--------SRAGLSDPNRPIGSFLFLGPTGVGKTELCKALA 619 (857)
T ss_pred eCCHHHHHHHHHHHHH--------HHhcccCCCCCCceEEEECCCCCCHHHHHHHHH
Confidence 4777777777777755 112222 22358999999999999997443
No 178
>KOG1803|consensus
Probab=96.77 E-value=0.002 Score=60.61 Aligned_cols=18 Identities=50% Similarity=0.833 Sum_probs=15.4
Q ss_pred CceeEEEcCCCCCCCccc
Q psy7782 32 PKGVILYGPPGTGKTLPF 49 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la 49 (225)
..-.++|||||||||...
T Consensus 201 k~l~~I~GPPGTGKT~Tl 218 (649)
T KOG1803|consen 201 KDLLIIHGPPGTGKTRTL 218 (649)
T ss_pred CCceEeeCCCCCCceeeH
Confidence 356789999999999965
No 179
>PRK14532 adenylate kinase; Provisional
Probab=96.76 E-value=0.00049 Score=55.56 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=19.9
Q ss_pred eeEEEcCCCCCCCccccc---ccCCceee
Q psy7782 34 GVILYGPPGTGKTLPFSP---ALGYHYYC 59 (225)
Q Consensus 34 giLl~GppGtGKT~la~~---~~~~~~~~ 59 (225)
.++|.||||+||||+|+. ..|+.+++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is 30 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLS 30 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 489999999999999973 34555543
No 180
>PHA00729 NTP-binding motif containing protein
Probab=96.75 E-value=0.00032 Score=58.90 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=18.1
Q ss_pred ceeEEEcCCCCCCCccccccc
Q psy7782 33 KGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~ 53 (225)
..++++|+||||||++|.+++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa 38 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVA 38 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999997543
No 181
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.75 E-value=0.00069 Score=58.90 Aligned_cols=19 Identities=47% Similarity=1.024 Sum_probs=16.7
Q ss_pred CceeEEEcCCCCCCCcccc
Q psy7782 32 PKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~ 50 (225)
+..+|||||||||||++|.
T Consensus 24 ~halL~~Gp~G~Gktt~a~ 42 (325)
T COG0470 24 PHALLFYGPPGVGKTTAAL 42 (325)
T ss_pred CceeeeeCCCCCCHHHHHH
Confidence 3479999999999999884
No 182
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=96.75 E-value=0.00055 Score=65.59 Aligned_cols=21 Identities=52% Similarity=0.915 Sum_probs=18.3
Q ss_pred CCceeEEEcCCCCCCCccccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~ 51 (225)
.+..++|+||||||||++|+.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~ 194 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARL 194 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 456799999999999999973
No 183
>PRK09183 transposase/IS protein; Provisional
Probab=96.74 E-value=0.00036 Score=59.78 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=19.2
Q ss_pred CCCceeEEEcCCCCCCCcccccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~ 52 (225)
....+++|+||||||||++|.+.
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHH
Confidence 34568999999999999999744
No 184
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.72 E-value=0.0011 Score=65.95 Aligned_cols=44 Identities=20% Similarity=0.474 Sum_probs=30.9
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCC----CCCceeEEEcCCCCCCCcccccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGI----KPPKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~----~~~~giLl~GppGtGKT~la~~~ 52 (225)
+|.+++.+.+.+.+... ..|+ .|...+||+||||||||++|++.
T Consensus 568 ~GQ~~av~~v~~~i~~~--------~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~L 615 (852)
T TIGR03346 568 VGQDEAVEAVSDAIRRS--------RAGLSDPNRPIGSFLFLGPTGVGKTELAKAL 615 (852)
T ss_pred CCChHHHHHHHHHHHHH--------hccCCCCCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 47777777777777651 1222 23456899999999999999733
No 185
>PF13479 AAA_24: AAA domain
Probab=96.70 E-value=0.00073 Score=56.10 Aligned_cols=31 Identities=29% Similarity=0.517 Sum_probs=23.6
Q ss_pred ceeEEEcCCCCCCCcccccccCCceeeccCC
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHYYCRGAG 63 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~~~~~~~ 63 (225)
--+++|||||+|||++|...-+.-|+..-.|
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~~k~l~id~E~g 34 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASLPKPLFIDTENG 34 (213)
T ss_pred eEEEEECCCCCCHHHHHHhCCCeEEEEeCCC
Confidence 4689999999999999987744545555444
No 186
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.70 E-value=0.00042 Score=56.83 Aligned_cols=16 Identities=50% Similarity=1.020 Sum_probs=12.9
Q ss_pred eEEEcCCCCCCCcccc
Q psy7782 35 VILYGPPGTGKTLPFS 50 (225)
Q Consensus 35 iLl~GppGtGKT~la~ 50 (225)
.++.||||||||+++.
T Consensus 20 ~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLA 35 (236)
T ss_dssp EEEE-STTSSHHHHHH
T ss_pred EEEECCCCCChHHHHH
Confidence 7899999999998653
No 187
>PRK03839 putative kinase; Provisional
Probab=96.69 E-value=0.00048 Score=55.29 Aligned_cols=27 Identities=37% Similarity=0.560 Sum_probs=21.1
Q ss_pred eeEEEcCCCCCCCcccc---cccCCceeec
Q psy7782 34 GVILYGPPGTGKTLPFS---PALGYHYYCR 60 (225)
Q Consensus 34 giLl~GppGtGKT~la~---~~~~~~~~~~ 60 (225)
-|+|.|+||+||||+++ ...+.+++++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~ 31 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDL 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 38899999999999997 3346677653
No 188
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.69 E-value=0.00081 Score=64.48 Aligned_cols=42 Identities=19% Similarity=0.367 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~ 51 (225)
|.++..+.|..++... .++..+.+-++|+||||||||++++.
T Consensus 88 ~~~~ki~~l~~~l~~~--------~~~~~~~~illL~GP~GsGKTTl~~~ 129 (637)
T TIGR00602 88 VHKKKIEEVETWLKAQ--------VLENAPKRILLITGPSGCGKSTTIKI 129 (637)
T ss_pred CcHHHHHHHHHHHHhc--------ccccCCCcEEEEECCCCCCHHHHHHH
Confidence 3444555555554431 12233445689999999999998863
No 189
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.68 E-value=0.00055 Score=53.06 Aligned_cols=28 Identities=32% Similarity=0.370 Sum_probs=22.0
Q ss_pred eeEEEcCCCCCCCccccc---ccCCceeecc
Q psy7782 34 GVILYGPPGTGKTLPFSP---ALGYHYYCRG 61 (225)
Q Consensus 34 giLl~GppGtGKT~la~~---~~~~~~~~~~ 61 (225)
.|+|+||||||||++|+. ..|.++++..
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 378999999999999973 4477777543
No 190
>PRK13947 shikimate kinase; Provisional
Probab=96.67 E-value=0.00063 Score=53.92 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=23.1
Q ss_pred eeEEEcCCCCCCCcccc---cccCCceeecc
Q psy7782 34 GVILYGPPGTGKTLPFS---PALGYHYYCRG 61 (225)
Q Consensus 34 giLl~GppGtGKT~la~---~~~~~~~~~~~ 61 (225)
.|+|.||||||||++|+ ...|.+|++..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 58999999999999996 45678887544
No 191
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.66 E-value=0.00085 Score=59.70 Aligned_cols=41 Identities=24% Similarity=0.279 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccccC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
+|.+++|.+|.-....| ...|++|.||||||||+++++.++
T Consensus 7 vgq~~~~~al~~~~~~~-------------~~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 7 VGQDEMKLALLLNVIDP-------------KIGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred ccHHHHHHHHHHHhcCC-------------CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 57788877765555442 235899999999999999987765
No 192
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.65 E-value=0.0011 Score=58.25 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=29.3
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
+|.+.+++.+...+.. | ..+..+|||||+|+|||++|.
T Consensus 7 ~g~~~~~~~l~~~~~~-----------~-~~~ha~Lf~G~~G~Gk~~la~ 44 (313)
T PRK05564 7 IGHENIKNRIKNSIIK-----------N-RFSHAHIIVGEDGIGKSLLAK 44 (313)
T ss_pred cCcHHHHHHHHHHHHc-----------C-CCCceEEeECCCCCCHHHHHH
Confidence 4777777777776633 2 455788999999999999995
No 193
>PRK14531 adenylate kinase; Provisional
Probab=96.64 E-value=0.00069 Score=54.75 Aligned_cols=18 Identities=33% Similarity=0.779 Sum_probs=16.4
Q ss_pred ceeEEEcCCCCCCCcccc
Q psy7782 33 KGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~ 50 (225)
.-|+++||||+|||++++
T Consensus 3 ~~i~i~G~pGsGKsT~~~ 20 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAA 20 (183)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 469999999999999986
No 194
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.63 E-value=0.00068 Score=52.62 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=18.6
Q ss_pred eEEEcCCCCCCCcccc---cccCCcee
Q psy7782 35 VILYGPPGTGKTLPFS---PALGYHYY 58 (225)
Q Consensus 35 iLl~GppGtGKT~la~---~~~~~~~~ 58 (225)
++|.||||+|||++|+ ...+..++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i 28 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI 28 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE
Confidence 6899999999999997 33455444
No 195
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.63 E-value=0.0011 Score=59.36 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=29.3
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~ 52 (225)
+|.+++++.|...+.. | ..+.++||+||+|+|||++|...
T Consensus 26 ~Gh~~a~~~L~~a~~~-----------g-rl~ha~L~~G~~G~GKttlA~~l 65 (351)
T PRK09112 26 FGHEEAEAFLAQAYRE-----------G-KLHHALLFEGPEGIGKATLAFHL 65 (351)
T ss_pred cCcHHHHHHHHHHHHc-----------C-CCCeeEeeECCCCCCHHHHHHHH
Confidence 4666666666665554 2 34568999999999999999633
No 196
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.63 E-value=0.00072 Score=57.66 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=32.0
Q ss_pred cCCCCCceeEEEcCCCCCCCcccc------cccCCceeeccCCCC
Q psy7782 27 MGIKPPKGVILYGPPGTGKTLPFS------PALGYHYYCRGAGSN 65 (225)
Q Consensus 27 ~g~~~~~giLl~GppGtGKT~la~------~~~~~~~~~~~~~~~ 65 (225)
-|++..+-+|++|+||||||+++. +..|-+.+.++..+.
T Consensus 18 GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 18 GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES 62 (260)
T ss_pred CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 467888899999999999999984 555788888777774
No 197
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.58 E-value=0.00043 Score=55.67 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=23.9
Q ss_pred CCceeEEEcCCCCCCCccccccc---C----CceeeccCCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPAL---G----YHYYCRGAGS 64 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~---~----~~~~~~~~~~ 64 (225)
|...+||.||+|||||.+|++.+ . .+++.++.++
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~ 42 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSE 42 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhc
Confidence 45578999999999999997333 2 2666555554
No 198
>PRK13949 shikimate kinase; Provisional
Probab=96.58 E-value=0.00077 Score=53.99 Aligned_cols=29 Identities=28% Similarity=0.301 Sum_probs=23.3
Q ss_pred ceeEEEcCCCCCCCcccc---cccCCceeecc
Q psy7782 33 KGVILYGPPGTGKTLPFS---PALGYHYYCRG 61 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~---~~~~~~~~~~~ 61 (225)
+.|+|.||||+|||++++ ...+.++++..
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 469999999999999997 44567777654
No 199
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.57 E-value=0.00065 Score=54.44 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=21.1
Q ss_pred eeEEEcCCCCCCCccccccc---CCceeec
Q psy7782 34 GVILYGPPGTGKTLPFSPAL---GYHYYCR 60 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~---~~~~~~~ 60 (225)
-+++.||||+||||+|+..+ |...++.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~ 34 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLST 34 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 57899999999999998555 6655543
No 200
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.57 E-value=0.00049 Score=63.45 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=17.9
Q ss_pred CceeEEEcCCCCCCCcccccc
Q psy7782 32 PKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~ 52 (225)
..+++||||||||||+|+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai 168 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAI 168 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 367999999999999999633
No 201
>PRK05642 DNA replication initiation factor; Validated
Probab=96.56 E-value=0.00049 Score=58.03 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=18.1
Q ss_pred CceeEEEcCCCCCCCcccccc
Q psy7782 32 PKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~ 52 (225)
...++||||+|||||+|+.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~ 65 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAA 65 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 368899999999999998754
No 202
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.56 E-value=0.00094 Score=56.28 Aligned_cols=38 Identities=29% Similarity=0.308 Sum_probs=28.8
Q ss_pred cCCCCCceeEEEcCCCCCCCcccc------cccCCceeeccCCC
Q psy7782 27 MGIKPPKGVILYGPPGTGKTLPFS------PALGYHYYCRGAGS 64 (225)
Q Consensus 27 ~g~~~~~giLl~GppGtGKT~la~------~~~~~~~~~~~~~~ 64 (225)
-|+++...+|++||||||||++|. +..|-+.+.++..+
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 378888999999999999999984 23455666555544
No 203
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.54 E-value=0.00082 Score=59.39 Aligned_cols=36 Identities=36% Similarity=0.496 Sum_probs=29.4
Q ss_pred CCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS 64 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~ 64 (225)
+...+.+||-||||||||++|+ ...+.+|+.+....
T Consensus 40 ~~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~ 78 (329)
T COG0714 40 LLAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTP 78 (329)
T ss_pred HHcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCC
Confidence 3456899999999999999997 55678888777665
No 204
>KOG1969|consensus
Probab=96.54 E-value=0.0012 Score=63.33 Aligned_cols=35 Identities=37% Similarity=0.537 Sum_probs=30.3
Q ss_pred CCceeEEEcCCCCCCCcccc---cccCCceeeccCCCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGSN 65 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~~ 65 (225)
+.+=+||+||||-||||||. .-+|..++.+++++-
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDe 362 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDE 362 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCceEEEeccccc
Confidence 34556899999999999996 779999999999993
No 205
>KOG1942|consensus
Probab=96.53 E-value=0.0011 Score=57.73 Aligned_cols=34 Identities=32% Similarity=0.426 Sum_probs=27.3
Q ss_pred CCceeEEEcCCCCCCCcccc---ccc--CCceeeccCCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFS---PAL--GYHYYCRGAGS 64 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~---~~~--~~~~~~~~~~~ 64 (225)
..|++||.||||||||.+|- .+. +.||..+.+++
T Consensus 63 aGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSE 101 (456)
T KOG1942|consen 63 AGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSE 101 (456)
T ss_pred cCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchh
Confidence 46899999999999999984 333 47888777776
No 206
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.53 E-value=0.00084 Score=54.13 Aligned_cols=25 Identities=32% Similarity=0.607 Sum_probs=19.4
Q ss_pred eEEEcCCCCCCCcccccc---cCCceee
Q psy7782 35 VILYGPPGTGKTLPFSPA---LGYHYYC 59 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~---~~~~~~~ 59 (225)
|+++||||+|||++|+.. .|..+++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~ 29 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS 29 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 789999999999999733 3555544
No 207
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.52 E-value=0.00076 Score=54.18 Aligned_cols=28 Identities=32% Similarity=0.473 Sum_probs=22.2
Q ss_pred eeEEEcCCCCCCCcccc--cccCCceeecc
Q psy7782 34 GVILYGPPGTGKTLPFS--PALGYHYYCRG 61 (225)
Q Consensus 34 giLl~GppGtGKT~la~--~~~~~~~~~~~ 61 (225)
-|++.|.||||||++|+ +..|.+.++++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLRELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHHHhCCceeeHH
Confidence 37899999999999997 45677766554
No 208
>PRK07261 topology modulation protein; Provisional
Probab=96.51 E-value=0.0009 Score=53.65 Aligned_cols=27 Identities=15% Similarity=0.166 Sum_probs=20.6
Q ss_pred eeEEEcCCCCCCCccccc---ccCCceeec
Q psy7782 34 GVILYGPPGTGKTLPFSP---ALGYHYYCR 60 (225)
Q Consensus 34 giLl~GppGtGKT~la~~---~~~~~~~~~ 60 (225)
-|++.||||+||||+|+. ..+.+++++
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~ 31 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHL 31 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEec
Confidence 378999999999999973 345565544
No 209
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.51 E-value=0.00054 Score=62.23 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=23.3
Q ss_pred CceeEEEcCCCCCCCccccccc--------CCceeeccCC
Q psy7782 32 PKGVILYGPPGTGKTLPFSPAL--------GYHYYCRGAG 63 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~--------~~~~~~~~~~ 63 (225)
..+++||||||||||+|+.+++ +..++.++..
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~ 175 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE 175 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH
Confidence 4578999999999999996433 4555555543
No 210
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.50 E-value=0.0011 Score=54.40 Aligned_cols=23 Identities=39% Similarity=0.683 Sum_probs=20.5
Q ss_pred CCCCCceeEEEcCCCCCCCcccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~ 50 (225)
|++...-++++||||||||++|.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~ 30 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICM 30 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHH
Confidence 67777888999999999999984
No 211
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.50 E-value=0.00053 Score=63.16 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=18.3
Q ss_pred CceeEEEcCCCCCCCccccccc
Q psy7782 32 PKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~ 53 (225)
..+++||||||||||+|+.+++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~ 151 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIG 151 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHH
Confidence 3579999999999999997433
No 212
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.49 E-value=0.0012 Score=59.21 Aligned_cols=22 Identities=50% Similarity=0.979 Sum_probs=19.5
Q ss_pred CCCCceeEEEcCCCCCCCcccc
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~ 50 (225)
..+++|+.||||+|||||+|..
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd 80 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMD 80 (362)
T ss_pred CCCCceEEEECCCCCchhHHHH
Confidence 4579999999999999999863
No 213
>PF13245 AAA_19: Part of AAA domain
Probab=96.47 E-value=0.00094 Score=46.49 Aligned_cols=15 Identities=53% Similarity=1.050 Sum_probs=12.2
Q ss_pred eEEEcCCCCCCCccc
Q psy7782 35 VILYGPPGTGKTLPF 49 (225)
Q Consensus 35 iLl~GppGtGKT~la 49 (225)
+++.||||||||+++
T Consensus 13 ~vv~g~pGtGKT~~~ 27 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTL 27 (76)
T ss_pred EEEECCCCCCHHHHH
Confidence 445999999999655
No 214
>PRK00625 shikimate kinase; Provisional
Probab=96.46 E-value=0.00086 Score=54.06 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=23.2
Q ss_pred eeEEEcCCCCCCCcccc---cccCCceeecc
Q psy7782 34 GVILYGPPGTGKTLPFS---PALGYHYYCRG 61 (225)
Q Consensus 34 giLl~GppGtGKT~la~---~~~~~~~~~~~ 61 (225)
.|+|.|+||+|||++++ ...|.+|+++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 48999999999999997 44578887664
No 215
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.46 E-value=0.00097 Score=57.08 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.5
Q ss_pred CCCCCceeEEEcCCCCCCCcccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~ 50 (225)
|+++..-+|++||||||||++|.
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~ 54 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVE 54 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHH
Confidence 67788888999999999999884
No 216
>PHA02624 large T antigen; Provisional
Probab=96.45 E-value=0.00085 Score=63.55 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=24.8
Q ss_pred CCCCCceeEEEcCCCCCCCcccccc---cCCceeecc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFSPA---LGYHYYCRG 61 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~~~---~~~~~~~~~ 61 (225)
|++..+-++||||||||||+++.+. .|-..++++
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVN 463 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVN 463 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEee
Confidence 4566779999999999999999733 333344444
No 217
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.44 E-value=0.00057 Score=52.75 Aligned_cols=18 Identities=33% Similarity=0.706 Sum_probs=15.5
Q ss_pred eEEEcCCCCCCCcccccc
Q psy7782 35 VILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~ 52 (225)
++++||||||||+++...
T Consensus 2 ~~i~G~~G~GKT~l~~~i 19 (165)
T cd01120 2 ILVFGPTGSGKTTLALQL 19 (165)
T ss_pred eeEeCCCCCCHHHHHHHH
Confidence 589999999999998633
No 218
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.43 E-value=0.00065 Score=62.64 Aligned_cols=31 Identities=29% Similarity=0.465 Sum_probs=23.3
Q ss_pred CceeEEEcCCCCCCCccccccc------CCceeeccC
Q psy7782 32 PKGVILYGPPGTGKTLPFSPAL------GYHYYCRGA 62 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~------~~~~~~~~~ 62 (225)
..+++||||||+|||+|+++.+ +..++.++.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~ 177 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS 177 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH
Confidence 3689999999999999997443 455555544
No 219
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.42 E-value=0.00098 Score=53.34 Aligned_cols=30 Identities=33% Similarity=0.232 Sum_probs=20.8
Q ss_pred eEEEcCCCCCCCcccc------cccCCceeeccCCC
Q psy7782 35 VILYGPPGTGKTLPFS------PALGYHYYCRGAGS 64 (225)
Q Consensus 35 iLl~GppGtGKT~la~------~~~~~~~~~~~~~~ 64 (225)
+|++||||||||+++. +..|-+.+.++.-+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~ 37 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE 37 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 6899999999999884 23445555444433
No 220
>KOG3347|consensus
Probab=96.40 E-value=0.0013 Score=51.70 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=22.9
Q ss_pred ceeEEEcCCCCCCCcccc---cccCCceeecc
Q psy7782 33 KGVILYGPPGTGKTLPFS---PALGYHYYCRG 61 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~---~~~~~~~~~~~ 61 (225)
-.||+.|-||||||++|. ...|.+++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 489999999999999996 44566666543
No 221
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.40 E-value=0.00041 Score=53.19 Aligned_cols=29 Identities=34% Similarity=0.430 Sum_probs=17.4
Q ss_pred eeEEEcCCCCCCCcccc---cccCCceeeccC
Q psy7782 34 GVILYGPPGTGKTLPFS---PALGYHYYCRGA 62 (225)
Q Consensus 34 giLl~GppGtGKT~la~---~~~~~~~~~~~~ 62 (225)
++||.|+||+|||++|+ ...|..|-.+..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~ 32 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQF 32 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE-
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEe
Confidence 48999999999999997 445666665544
No 222
>KOG0991|consensus
Probab=96.40 E-value=0.0024 Score=53.95 Aligned_cols=47 Identities=30% Similarity=0.333 Sum_probs=31.2
Q ss_pred ceeEEEcCCCCCCCccc----ccccC----CceeeccCCC--C-CCcc---chhhhhhcCC
Q psy7782 33 KGVILYGPPGTGKTLPF----SPALG----YHYYCRGAGS--N-SDKK---DDKDKKKKYE 79 (225)
Q Consensus 33 ~giLl~GppGtGKT~la----~~~~~----~~~~~~~~~~--~-~~~~---~~f~~a~~~~ 79 (225)
-.++|.||||||||+.+ +...| -.++.+++++ | .-+| ..|.+-+-.-
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~FAQ~kv~l 109 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMFAQKKVTL 109 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHHHHhhccC
Confidence 38999999999999954 55666 3355778888 4 3333 4565544443
No 223
>PRK14527 adenylate kinase; Provisional
Probab=96.39 E-value=0.0012 Score=53.71 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=19.0
Q ss_pred CCceeEEEcCCCCCCCccccccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~ 53 (225)
.+.=++++||||+|||++|+..+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La 27 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLA 27 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 44568999999999999997544
No 224
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.38 E-value=0.0015 Score=55.01 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=22.2
Q ss_pred ceeEEEcCCCCCCCcccccccC-CceeeccCCC
Q psy7782 33 KGVILYGPPGTGKTLPFSPALG-YHYYCRGAGS 64 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~-~~~~~~~~~~ 64 (225)
.-|+|.||||+||||+|+..+. ..+..++.|+
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gd 39 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMGN 39 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECCh
Confidence 4499999999999999974332 2344444454
No 225
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.38 E-value=0.001 Score=52.37 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=18.2
Q ss_pred eEEEcCCCCCCCccccc---ccCCcee
Q psy7782 35 VILYGPPGTGKTLPFSP---ALGYHYY 58 (225)
Q Consensus 35 iLl~GppGtGKT~la~~---~~~~~~~ 58 (225)
++|.||||||||++|+. ..+..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 57899999999999973 3344444
No 226
>PRK06217 hypothetical protein; Validated
Probab=96.37 E-value=0.0012 Score=53.33 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=22.1
Q ss_pred eeEEEcCCCCCCCcccc---cccCCceeec
Q psy7782 34 GVILYGPPGTGKTLPFS---PALGYHYYCR 60 (225)
Q Consensus 34 giLl~GppGtGKT~la~---~~~~~~~~~~ 60 (225)
-|++.|+||+||||+|+ ...|.+++++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~ 32 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDT 32 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEc
Confidence 48999999999999997 4457777754
No 227
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.35 E-value=0.0031 Score=56.16 Aligned_cols=42 Identities=19% Similarity=0.373 Sum_probs=30.4
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCC-ceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPP-KGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~-~giLl~GppGtGKT~la~ 50 (225)
.||++.++.|-+++.. +..|.... +=++|+||+|+|||+++.
T Consensus 64 ~G~~~~i~~lV~~fk~--------AA~g~~~~krIl~L~GPvg~GKSsl~~ 106 (358)
T PF08298_consen 64 YGMEETIERLVNYFKS--------AAQGLEERKRILLLLGPVGGGKSSLAE 106 (358)
T ss_pred cCcHHHHHHHHHHHHH--------HHhccCccceEEEEECCCCCCHHHHHH
Confidence 4788888877776655 33344444 445699999999999995
No 228
>PRK08727 hypothetical protein; Validated
Probab=96.34 E-value=0.00079 Score=56.68 Aligned_cols=20 Identities=40% Similarity=0.436 Sum_probs=17.2
Q ss_pred ceeEEEcCCCCCCCcccccc
Q psy7782 33 KGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~ 52 (225)
..++||||+|||||+++.+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~ 61 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALAL 61 (233)
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 56999999999999998643
No 229
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.002 Score=62.70 Aligned_cols=46 Identities=20% Similarity=0.416 Sum_probs=35.1
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCC----CCceeEEEcCCCCCCCcccccccC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIK----PPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~----~~~giLl~GppGtGKT~la~~~~~ 54 (225)
+|.+++.+.+-+.+.. ++.|+. |...+||.||.|+|||-+|++.+.
T Consensus 494 iGQd~AV~avs~aIrr--------aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~ 543 (786)
T COG0542 494 IGQDEAVEAVSDAIRR--------ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAE 543 (786)
T ss_pred eChHHHHHHHHHHHHH--------HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHH
Confidence 5888888888888876 455543 345678899999999999974443
No 230
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.33 E-value=0.00085 Score=50.02 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=15.0
Q ss_pred eEEEcCCCCCCCcccc
Q psy7782 35 VILYGPPGTGKTLPFS 50 (225)
Q Consensus 35 iLl~GppGtGKT~la~ 50 (225)
|+|.|+||+||||+|+
T Consensus 1 I~i~G~~GsGKtTia~ 16 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAK 16 (129)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred CEEECCCCCCHHHHHH
Confidence 6899999999999997
No 231
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.33 E-value=0.0021 Score=61.60 Aligned_cols=38 Identities=21% Similarity=0.369 Sum_probs=29.1
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
||.+++++.|...+.. | ..+..+|||||+|+|||++|+
T Consensus 20 iGq~~~~~~L~~~i~~-----------~-~l~hayLf~Gp~G~GKtt~A~ 57 (614)
T PRK14971 20 VGQEALTTTLKNAIAT-----------N-KLAHAYLFCGPRGVGKTTCAR 57 (614)
T ss_pred cCcHHHHHHHHHHHHc-----------C-CCCeeEEEECCCCCCHHHHHH
Confidence 5777777777776654 2 355789999999999999874
No 232
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.30 E-value=0.0024 Score=56.29 Aligned_cols=38 Identities=16% Similarity=0.384 Sum_probs=31.5
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
+|.+++++.+...+.. | ..+.++|||||+|+||+++|.
T Consensus 7 iGq~~~~~~L~~~i~~-----------~-rl~ha~Lf~G~~G~Gk~~~A~ 44 (314)
T PRK07399 7 IGQPLAIELLTAAIKQ-----------N-RIAPAYLFAGPEGVGRKLAAL 44 (314)
T ss_pred CCHHHHHHHHHHHHHh-----------C-CCCceEEEECCCCCCHHHHHH
Confidence 5888899888888766 2 345699999999999999885
No 233
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.30 E-value=0.00087 Score=50.40 Aligned_cols=19 Identities=37% Similarity=0.763 Sum_probs=14.1
Q ss_pred CceeEEEcCCCCCCCcccc
Q psy7782 32 PKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~ 50 (225)
.+.++++||||+|||++++
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 3578899999999999986
No 234
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.30 E-value=0.0013 Score=50.44 Aligned_cols=27 Identities=33% Similarity=0.602 Sum_probs=21.8
Q ss_pred eEEEcCCCCCCCccccc---ccCCceeecc
Q psy7782 35 VILYGPPGTGKTLPFSP---ALGYHYYCRG 61 (225)
Q Consensus 35 iLl~GppGtGKT~la~~---~~~~~~~~~~ 61 (225)
|.+.|+||||||++|+. ..|.++++..
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 57899999999999973 3478887665
No 235
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.26 E-value=0.00081 Score=54.49 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=24.2
Q ss_pred eeEEEcCCCCCCCcccccccC-CceeeccCCC
Q psy7782 34 GVILYGPPGTGKTLPFSPALG-YHYYCRGAGS 64 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~-~~~~~~~~~~ 64 (225)
.+++.||||.||||+|+..+. .++.+++-++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd 33 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGD 33 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhH
Confidence 478999999999999984433 6677777666
No 236
>PRK14526 adenylate kinase; Provisional
Probab=96.22 E-value=0.0011 Score=55.22 Aligned_cols=31 Identities=29% Similarity=0.581 Sum_probs=22.2
Q ss_pred eeEEEcCCCCCCCcccccccC-CceeeccCCC
Q psy7782 34 GVILYGPPGTGKTLPFSPALG-YHYYCRGAGS 64 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~-~~~~~~~~~~ 64 (225)
.++|+||||+|||++|+..+. ..+..++.|+
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~ 33 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGD 33 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecCh
Confidence 378999999999999985542 3444444555
No 237
>PLN02200 adenylate kinase family protein
Probab=96.21 E-value=0.0013 Score=55.57 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=17.9
Q ss_pred CCceeEEEcCCCCCCCcccccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~ 52 (225)
.+.-+++.||||+|||++|+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~L 63 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKI 63 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3456789999999999998733
No 238
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.21 E-value=0.0018 Score=51.62 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=19.5
Q ss_pred eEEEcCCCCCCCcccc---cccCCceee
Q psy7782 35 VILYGPPGTGKTLPFS---PALGYHYYC 59 (225)
Q Consensus 35 iLl~GppGtGKT~la~---~~~~~~~~~ 59 (225)
|-+.|||||||||+|+ ...|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999997 445666654
No 239
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.20 E-value=0.0012 Score=53.38 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=18.7
Q ss_pred CCCceeEEEcCCCCCCCccccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~ 51 (225)
..+..+|||||||+|||++|+.
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~ 33 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALA 33 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHH
Confidence 3457899999999999999863
No 240
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.20 E-value=0.0017 Score=51.98 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=16.4
Q ss_pred ceeEEEcCCCCCCCcccc
Q psy7782 33 KGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~ 50 (225)
+-++|.||||+|||++|+
T Consensus 3 ~~i~l~G~~gsGKst~a~ 20 (175)
T cd00227 3 RIIILNGGSSAGKSSIAR 20 (175)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 458899999999999997
No 241
>PRK04328 hypothetical protein; Provisional
Probab=96.20 E-value=0.002 Score=54.79 Aligned_cols=37 Identities=30% Similarity=0.344 Sum_probs=27.6
Q ss_pred CCCCCceeEEEcCCCCCCCcccc------cccCCceeeccCCC
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS------PALGYHYYCRGAGS 64 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~------~~~~~~~~~~~~~~ 64 (225)
|+++..-+|++||||||||+||. ...|-+.+.++..+
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 68888889999999999999874 23455555555444
No 242
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.19 E-value=0.0016 Score=53.67 Aligned_cols=18 Identities=39% Similarity=0.779 Sum_probs=16.1
Q ss_pred eEEEcCCCCCCCcccccc
Q psy7782 35 VILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~ 52 (225)
|+++||||+|||++|+..
T Consensus 2 I~i~G~pGsGKsT~a~~L 19 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRI 19 (210)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 789999999999999743
No 243
>PRK14530 adenylate kinase; Provisional
Probab=96.19 E-value=0.0015 Score=54.11 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=19.8
Q ss_pred eeEEEcCCCCCCCcccccc---cCCcee
Q psy7782 34 GVILYGPPGTGKTLPFSPA---LGYHYY 58 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~---~~~~~~ 58 (225)
.|+|.||||+||||+|+.. .|.+++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i 32 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHV 32 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEE
Confidence 5899999999999999733 455555
No 244
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.18 E-value=0.0021 Score=53.09 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=19.8
Q ss_pred CCCCCceeEEEcCCCCCCCcccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~ 50 (225)
|+....-++++||||||||++|.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~ 37 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAI 37 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHH
Confidence 56666678999999999999984
No 245
>PRK01184 hypothetical protein; Provisional
Probab=96.17 E-value=0.0016 Score=52.30 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=20.4
Q ss_pred eeEEEcCCCCCCCcccc--cccCCceeec
Q psy7782 34 GVILYGPPGTGKTLPFS--PALGYHYYCR 60 (225)
Q Consensus 34 giLl~GppGtGKT~la~--~~~~~~~~~~ 60 (225)
=|+|.||||+||||+++ ...|.++++.
T Consensus 3 ~i~l~G~~GsGKsT~a~~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSKIAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHcCCcEEEh
Confidence 47899999999999886 4456666543
No 246
>PRK14528 adenylate kinase; Provisional
Probab=96.16 E-value=0.0018 Score=52.58 Aligned_cols=20 Identities=40% Similarity=0.712 Sum_probs=17.1
Q ss_pred ceeEEEcCCCCCCCcccccc
Q psy7782 33 KGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~ 52 (225)
+.++++||||+|||++|+..
T Consensus 2 ~~i~i~G~pGsGKtt~a~~l 21 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKIL 21 (186)
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999743
No 247
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.14 E-value=0.0011 Score=56.38 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=16.3
Q ss_pred eeEEEcCCCCCCCcccccc
Q psy7782 34 GVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~ 52 (225)
-++|+||||+|||++++..
T Consensus 45 ~~~l~G~~G~GKTtl~~~l 63 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNL 63 (269)
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 4789999999999999733
No 248
>PRK13948 shikimate kinase; Provisional
Probab=96.12 E-value=0.0024 Score=51.89 Aligned_cols=32 Identities=34% Similarity=0.268 Sum_probs=26.4
Q ss_pred CCCceeEEEcCCCCCCCcccc---cccCCceeecc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFS---PALGYHYYCRG 61 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~ 61 (225)
.+++.|+|.|++|||||++++ ...|.+|++..
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 456899999999999999997 34678888665
No 249
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.09 E-value=0.0032 Score=50.04 Aligned_cols=37 Identities=24% Similarity=0.472 Sum_probs=27.4
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
|.+++++.|...+.. + ..+..+|||||+|+||+++|.
T Consensus 1 gq~~~~~~L~~~~~~-----------~-~l~ha~L~~G~~g~gk~~~a~ 37 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----------G-RLPHALLFHGPSGSGKKTLAL 37 (162)
T ss_dssp S-HHHHHHHHHHHHC-----------T-C--SEEEEECSTTSSHHHHHH
T ss_pred CcHHHHHHHHHHHHc-----------C-CcceeEEEECCCCCCHHHHHH
Confidence 667777777777665 2 456789999999999999885
No 250
>PRK02496 adk adenylate kinase; Provisional
Probab=96.09 E-value=0.0019 Score=51.98 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=16.9
Q ss_pred eeEEEcCCCCCCCccccccc
Q psy7782 34 GVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~ 53 (225)
-++++||||+|||++|+..+
T Consensus 3 ~i~i~G~pGsGKst~a~~la 22 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLA 22 (184)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48899999999999997443
No 251
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.08 E-value=0.0014 Score=54.50 Aligned_cols=37 Identities=30% Similarity=0.349 Sum_probs=27.7
Q ss_pred CCCCCceeEEEcCCCCCCCcccc------ccc-CCceeeccCCC
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS------PAL-GYHYYCRGAGS 64 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~------~~~-~~~~~~~~~~~ 64 (225)
|++...-+|+.||||||||+++. +.. |-+.+.++..+
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 78888899999999999999984 344 76766666554
No 252
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.0019 Score=56.74 Aligned_cols=29 Identities=31% Similarity=0.523 Sum_probs=23.8
Q ss_pred CceeEEEcCCCCCCCcccc---cccCCceeec
Q psy7782 32 PKGVILYGPPGTGKTLPFS---PALGYHYYCR 60 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~---~~~~~~~~~~ 60 (225)
...|||.||.|||||+||+ ...+.||.--
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiA 128 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIA 128 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeec
Confidence 4689999999999999996 5667777633
No 253
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.07 E-value=0.0024 Score=59.47 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=32.7
Q ss_pred CCCCCceeEEEcCCCCCCCcccc------cc-cCCceeeccCCCCCCccchhhhhhcC
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS------PA-LGYHYYCRGAGSNSDKKDDKDKKKKY 78 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~------~~-~~~~~~~~~~~~~~~~~~~f~~a~~~ 78 (225)
|+++.+.+|+.||||||||+||. +. .|-+.+.++..+ +..++.+.|+.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE--~~~~l~~~~~~~ 72 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEE--SPQDIIKNARSF 72 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEec--CHHHHHHHHHHc
Confidence 68889999999999999999985 12 245665555544 233344444443
No 254
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.0045 Score=55.72 Aligned_cols=20 Identities=50% Similarity=0.994 Sum_probs=17.2
Q ss_pred CCceeEEEcCCCCCCCcccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~ 50 (225)
.|..+++|||||||||..++
T Consensus 41 ~p~n~~iyG~~GTGKT~~~~ 60 (366)
T COG1474 41 RPSNIIIYGPTGTGKTATVK 60 (366)
T ss_pred CCccEEEECCCCCCHhHHHH
Confidence 44569999999999999885
No 255
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.06 E-value=0.0026 Score=51.07 Aligned_cols=30 Identities=23% Similarity=0.424 Sum_probs=23.7
Q ss_pred CceeEEEcCCCCCCCccccccc---CCceeecc
Q psy7782 32 PKGVILYGPPGTGKTLPFSPAL---GYHYYCRG 61 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~---~~~~~~~~ 61 (225)
.+.|+|.||+|+|||++++..+ +.++++..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D 36 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECC
Confidence 4579999999999999998444 67776554
No 256
>PF05729 NACHT: NACHT domain
Probab=96.05 E-value=0.0017 Score=50.40 Aligned_cols=17 Identities=29% Similarity=0.567 Sum_probs=15.3
Q ss_pred eeEEEcCCCCCCCcccc
Q psy7782 34 GVILYGPPGTGKTLPFS 50 (225)
Q Consensus 34 giLl~GppGtGKT~la~ 50 (225)
-++++|+||+|||++++
T Consensus 2 ~l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR 18 (166)
T ss_pred EEEEECCCCCChHHHHH
Confidence 47899999999999986
No 257
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.04 E-value=0.0032 Score=60.58 Aligned_cols=38 Identities=18% Similarity=0.172 Sum_probs=27.2
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~ 51 (225)
+|.++++..+.-....| ...|+||+||||||||++|++
T Consensus 7 vGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~ 44 (633)
T TIGR02442 7 VGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARG 44 (633)
T ss_pred cChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHH
Confidence 57777776665444331 124899999999999999973
No 258
>PLN02674 adenylate kinase
Probab=96.03 E-value=0.0015 Score=55.63 Aligned_cols=34 Identities=35% Similarity=0.571 Sum_probs=24.6
Q ss_pred CCceeEEEcCCCCCCCcccccccC-CceeeccCCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALG-YHYYCRGAGS 64 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~-~~~~~~~~~~ 64 (225)
+...++|.||||+||||+|+.++. ..+..++.|+
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~Gd 64 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGD 64 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhH
Confidence 346799999999999999974433 4455555555
No 259
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.03 E-value=0.0022 Score=53.08 Aligned_cols=18 Identities=44% Similarity=0.726 Sum_probs=16.1
Q ss_pred eEEEcCCCCCCCcccccc
Q psy7782 35 VILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~ 52 (225)
|+++||||+|||++|+..
T Consensus 3 I~v~G~pGsGKsT~a~~l 20 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFI 20 (215)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 899999999999999743
No 260
>PHA02774 E1; Provisional
Probab=96.02 E-value=0.0016 Score=61.42 Aligned_cols=27 Identities=33% Similarity=0.698 Sum_probs=21.1
Q ss_pred CCCCCceeEEEcCCCCCCCcccccccC
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
+++..+.++||||||||||++|.+++.
T Consensus 430 ~~PKknciv~~GPP~TGKS~fa~sL~~ 456 (613)
T PHA02774 430 GIPKKNCLVIYGPPDTGKSMFCMSLIK 456 (613)
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHH
Confidence 344456899999999999999975543
No 261
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.02 E-value=0.0034 Score=60.33 Aligned_cols=20 Identities=35% Similarity=0.703 Sum_probs=17.6
Q ss_pred ceeEEEcCCCCCCCcccccc
Q psy7782 33 KGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~ 52 (225)
+.++|+||||||||++|++.
T Consensus 51 ~~~l~~G~~G~GKttla~~l 70 (637)
T PRK13765 51 RHVMMIGSPGTGKSMLAKAM 70 (637)
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 47999999999999999743
No 262
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.00 E-value=0.0017 Score=52.16 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=23.9
Q ss_pred ceeEEEcCCCCCCCccccc---ccCCceeecc
Q psy7782 33 KGVILYGPPGTGKTLPFSP---ALGYHYYCRG 61 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~---~~~~~~~~~~ 61 (225)
+.|.|.|++|+||||+.++ ..+.+|++..
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 5789999999999999874 4578888654
No 263
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.99 E-value=0.0026 Score=56.17 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=24.2
Q ss_pred cCChHHHHHc---CCCCCceeEEEcCCCCCCCcccc
Q psy7782 18 LTHPEYYEEM---GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 18 l~~~~~~~~~---g~~~~~giLl~GppGtGKT~la~ 50 (225)
...+.+-.-+ |++..+-+++|||||||||+||-
T Consensus 38 TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL 73 (321)
T TIGR02012 38 TGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLAL 73 (321)
T ss_pred CCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHH
Confidence 3444554444 46777778899999999999974
No 264
>PRK06547 hypothetical protein; Provisional
Probab=95.97 E-value=0.0026 Score=51.20 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=22.6
Q ss_pred CCCceeEEEcCCCCCCCcccccc---cCCceee
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPA---LGYHYYC 59 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~---~~~~~~~ 59 (225)
..+.-|++.||||+|||++|+.. .+.++++
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~ 45 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVH 45 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeec
Confidence 45678889999999999999743 4555543
No 265
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.97 E-value=0.002 Score=57.47 Aligned_cols=28 Identities=39% Similarity=0.609 Sum_probs=21.9
Q ss_pred CCCce--eEEEcCCCCCCCcccccccCCce
Q psy7782 30 KPPKG--VILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 30 ~~~~g--iLl~GppGtGKT~la~~~~~~~~ 57 (225)
....| +-|.||+||||||+.+.++|..-
T Consensus 27 ~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 27 DIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 33455 56899999999999998888443
No 266
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.92 E-value=0.0044 Score=54.90 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=18.2
Q ss_pred CCCceeEEEcCCCCCCCcccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~ 50 (225)
..+..+|||||+|+|||++|.
T Consensus 26 ~l~ha~Lf~G~~G~gk~~~a~ 46 (329)
T PRK08058 26 RLSHAYLFEGAKGTGKKATAL 46 (329)
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 456788999999999999885
No 267
>PRK08356 hypothetical protein; Provisional
Probab=95.91 E-value=0.002 Score=52.56 Aligned_cols=31 Identities=16% Similarity=-0.045 Sum_probs=21.0
Q ss_pred eeEEEcCCCCCCCcccccccCCceeeccCCC
Q psy7782 34 GVILYGPPGTGKTLPFSPALGYHYYCRGAGS 64 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~~~~~~~~~~~ 64 (225)
-++|.||||+|||++|+......+..++.++
T Consensus 7 ~i~~~G~~gsGK~t~a~~l~~~g~~~is~~~ 37 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKFFEEKGFCRVSCSD 37 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCcEEeCCC
Confidence 4789999999999999744333333444443
No 268
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.91 E-value=0.0018 Score=53.41 Aligned_cols=31 Identities=26% Similarity=0.499 Sum_probs=22.5
Q ss_pred ChHHHHHcCCCCCceeEEEcCCCCCCCcccccc
Q psy7782 20 HPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 20 ~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~ 52 (225)
+|..+..- ..++-++|.||||||||+++..+
T Consensus 3 ~~~~~~~~--~~~~~ivi~GpsG~GK~tl~~~L 33 (206)
T PRK14738 3 NPWLFNKP--AKPLLVVISGPSGVGKDAVLARM 33 (206)
T ss_pred CccccCCC--CCCeEEEEECcCCCCHHHHHHHH
Confidence 44444432 35677889999999999998644
No 269
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.90 E-value=0.0035 Score=52.20 Aligned_cols=23 Identities=43% Similarity=0.475 Sum_probs=20.9
Q ss_pred CCCCCceeEEEcCCCCCCCcccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~ 50 (225)
|+++..-++++||||||||+++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~ 38 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCL 38 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHH
Confidence 68888889999999999999885
No 270
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.90 E-value=0.0025 Score=49.02 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=18.0
Q ss_pred CCceeEEEcCCCCCCCcccccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~ 52 (225)
....+||+|+|||||+++|++.
T Consensus 20 ~~~pvli~GE~GtGK~~~A~~l 41 (138)
T PF14532_consen 20 SSSPVLITGEPGTGKSLLARAL 41 (138)
T ss_dssp SSS-EEEECCTTSSHHHHHHCC
T ss_pred CCCcEEEEcCCCCCHHHHHHHH
Confidence 4578999999999999999743
No 271
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=95.90 E-value=0.0057 Score=53.69 Aligned_cols=33 Identities=21% Similarity=0.222 Sum_probs=27.0
Q ss_pred CCCCceeEEEcCCCCCCCccccc---ccCCceeecc
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSP---ALGYHYYCRG 61 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~---~~~~~~~~~~ 61 (225)
+.+...|.|.|+||||||++++. ..|.+|+...
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 56778999999999999999974 4588888543
No 272
>PRK09087 hypothetical protein; Validated
Probab=95.86 E-value=0.0019 Score=54.27 Aligned_cols=19 Identities=47% Similarity=0.532 Sum_probs=16.6
Q ss_pred ceeEEEcCCCCCCCccccc
Q psy7782 33 KGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~ 51 (225)
..+.||||+|||||+|+++
T Consensus 45 ~~l~l~G~~GsGKThLl~~ 63 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASI 63 (226)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3489999999999999973
No 273
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.86 E-value=0.0038 Score=52.24 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=27.4
Q ss_pred CCCCCceeEEEcCCCCCCCccccc------ccCCceeeccCCC
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFSP------ALGYHYYCRGAGS 64 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~~------~~~~~~~~~~~~~ 64 (225)
|++...-++++||||||||+++.+ ..|-+.+.+...+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 788888999999999999999852 2345555554433
No 274
>PRK04040 adenylate kinase; Provisional
Probab=95.84 E-value=0.0029 Score=51.62 Aligned_cols=19 Identities=42% Similarity=0.614 Sum_probs=16.9
Q ss_pred CceeEEEcCCCCCCCcccc
Q psy7782 32 PKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~ 50 (225)
++-++++|+||||||++++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~ 20 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLN 20 (188)
T ss_pred CeEEEEEeCCCCCHHHHHH
Confidence 4568999999999999997
No 275
>PRK13946 shikimate kinase; Provisional
Probab=95.83 E-value=0.0032 Score=50.93 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=25.1
Q ss_pred CCceeEEEcCCCCCCCcccc---cccCCceeecc
Q psy7782 31 PPKGVILYGPPGTGKTLPFS---PALGYHYYCRG 61 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~---~~~~~~~~~~~ 61 (225)
.++.|+|.|+||||||++++ ...|.+|++..
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 35689999999999999997 34588888554
No 276
>PRK05973 replicative DNA helicase; Provisional
Probab=95.82 E-value=0.0036 Score=53.03 Aligned_cols=37 Identities=30% Similarity=0.173 Sum_probs=26.4
Q ss_pred CCCCCceeEEEcCCCCCCCcccc------cccCCceeeccCCC
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS------PALGYHYYCRGAGS 64 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~------~~~~~~~~~~~~~~ 64 (225)
|+.+..-+|+.|+||+|||+++- +..|-+.+.++.-+
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe 102 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY 102 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 67777888999999999999874 23355554444433
No 277
>KOG1970|consensus
Probab=95.82 E-value=0.0088 Score=55.94 Aligned_cols=26 Identities=35% Similarity=0.695 Sum_probs=19.3
Q ss_pred ceeEEEcCCCCCCCcccc---cccCCcee
Q psy7782 33 KGVILYGPPGTGKTLPFS---PALGYHYY 58 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~---~~~~~~~~ 58 (225)
+=+||.||+||||||.++ .+.|..+.
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~ 139 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLI 139 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence 457899999999999875 44554444
No 278
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.81 E-value=0.0041 Score=52.33 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=20.2
Q ss_pred CCCCCceeEEEcCCCCCCCcccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~ 50 (225)
|++...-+++.||||||||++|.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~ 42 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQ 42 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHH
Confidence 57777888999999999999973
No 279
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.80 E-value=0.0032 Score=51.04 Aligned_cols=26 Identities=27% Similarity=0.546 Sum_probs=21.3
Q ss_pred CCCCceeEEEcCCCCCCCcccccccC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
+.....+++.||+|+|||+++++.++
T Consensus 22 v~~g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 22 VEARKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHh
Confidence 45567899999999999999875554
No 280
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.78 E-value=0.0026 Score=56.52 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=19.7
Q ss_pred eeEEEcCCCCCCCcccccccCCc
Q psy7782 34 GVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~~~ 56 (225)
=+.|.||+||||||+.+.+||..
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36799999999999999888843
No 281
>PRK06762 hypothetical protein; Provisional
Probab=95.77 E-value=0.0032 Score=49.70 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=17.0
Q ss_pred CceeEEEcCCCCCCCccccc
Q psy7782 32 PKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~ 51 (225)
+.=+++.|+||+|||++|+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~ 21 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQ 21 (166)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34578999999999999973
No 282
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.76 E-value=0.0042 Score=51.58 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=19.7
Q ss_pred CCCCCceeEEEcCCCCCCCcccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~ 50 (225)
|++...-++++||||+|||++|.
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~ 41 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICL 41 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHH
Confidence 66666778999999999999985
No 283
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.75 E-value=0.0036 Score=49.63 Aligned_cols=29 Identities=34% Similarity=0.486 Sum_probs=23.2
Q ss_pred ceeEEEcCCCCCCCcccc---cccCCceeecc
Q psy7782 33 KGVILYGPPGTGKTLPFS---PALGYHYYCRG 61 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~---~~~~~~~~~~~ 61 (225)
+.++|.|+||||||++++ ...|.+|++..
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 468999999999999997 34578887643
No 284
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.74 E-value=0.004 Score=55.09 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=22.9
Q ss_pred CChHHHHHc---CCCCCceeEEEcCCCCCCCcccc
Q psy7782 19 THPEYYEEM---GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 19 ~~~~~~~~~---g~~~~~giLl~GppGtGKT~la~ 50 (225)
..+.+-.-+ |++..+-+++|||||||||+||-
T Consensus 39 Gi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal 73 (325)
T cd00983 39 GSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLAL 73 (325)
T ss_pred CCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHH
Confidence 344444443 46666667899999999999984
No 285
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.71 E-value=0.005 Score=56.69 Aligned_cols=20 Identities=35% Similarity=0.634 Sum_probs=17.8
Q ss_pred CCceeEEEcCCCCCCCcccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~ 50 (225)
.|.-++|+||||+|||+++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 46789999999999999885
No 286
>smart00350 MCM minichromosome maintenance proteins.
Probab=95.71 E-value=0.0044 Score=58.12 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=17.5
Q ss_pred ceeEEEcCCCCCCCcccccc
Q psy7782 33 KGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~ 52 (225)
..+||+|+||||||++|+..
T Consensus 237 ~~vLL~G~pGtGKs~lar~l 256 (509)
T smart00350 237 INILLLGDPGTAKSQLLKYV 256 (509)
T ss_pred ceEEEeCCCChhHHHHHHHH
Confidence 36999999999999999744
No 287
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.69 E-value=0.0023 Score=59.14 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=18.0
Q ss_pred CceeEEEcCCCCCCCcccccc
Q psy7782 32 PKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~ 52 (225)
..+++||||+|||||+|+.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai 161 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAA 161 (450)
T ss_pred cCceEEECCCCCcHHHHHHHH
Confidence 367999999999999998744
No 288
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.68 E-value=0.0046 Score=54.09 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=18.8
Q ss_pred CCCCCceeEEEcCCCCCCCcccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~ 50 (225)
|++...-++++||||||||++|-
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~ 113 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICH 113 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHH
Confidence 45666667899999999999884
No 289
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.67 E-value=0.0047 Score=51.47 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=19.8
Q ss_pred CCCCCceeEEEcCCCCCCCcccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~ 50 (225)
|++...=+.|+||||||||++|.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~ 37 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCH 37 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHH
Confidence 56667777899999999999985
No 290
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.66 E-value=0.0017 Score=54.17 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=17.5
Q ss_pred CceeEEEcCCCCCCCcccccc
Q psy7782 32 PKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~ 52 (225)
...++||||+|+|||+|..++
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai 54 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAI 54 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHH
Confidence 356899999999999988643
No 291
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.66 E-value=0.0038 Score=46.36 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=20.6
Q ss_pred CCCCceeEEEcCCCCCCCccccccc
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~ 53 (225)
+.+...+.|.||+|||||++++..+
T Consensus 12 i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 12 VYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 3455779999999999999998654
No 292
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.65 E-value=0.0043 Score=54.83 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=18.8
Q ss_pred CCceeEEEcCCCCCCCcccccccC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~ 54 (225)
.+.-++|.||+|+||||+++..++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456678999999999998864443
No 293
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.61 E-value=0.0047 Score=45.66 Aligned_cols=18 Identities=44% Similarity=0.728 Sum_probs=15.6
Q ss_pred ceeEEEcCCCCCCCcccc
Q psy7782 33 KGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~ 50 (225)
++++++||+|+|||+.+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~ 18 (144)
T cd00046 1 RDVLLAAPTGSGKTLAAL 18 (144)
T ss_pred CCEEEECCCCCchhHHHH
Confidence 478999999999999774
No 294
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.61 E-value=0.0065 Score=52.48 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=17.6
Q ss_pred CCCceeEEEcCCCCCCCcccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~ 50 (225)
..++-++|.||||+|||+++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIA 90 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHH
Confidence 345778899999999999875
No 295
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.60 E-value=0.0029 Score=51.14 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=18.2
Q ss_pred ceeEEEcCCCCCCCcccccccC
Q psy7782 33 KGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~ 54 (225)
.-+.|.||+|+||||+++.+++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999985544
No 296
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.59 E-value=0.0089 Score=53.00 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=27.6
Q ss_pred CCceeEEEcCCCCCCCcccccc------cCCceeeccCCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPA------LGYHYYCRGAGS 64 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~------~~~~~~~~~~~~ 64 (225)
....|||+|++||||+++|+++ .+.+|+.++.+.
T Consensus 21 ~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~ 60 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAA 60 (329)
T ss_pred CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCC
Confidence 4578999999999999999732 457898887765
No 297
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.56 E-value=0.006 Score=53.69 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=19.4
Q ss_pred CCCCCceeEEEcCCCCCCCcccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~ 50 (225)
|++...-++++||||||||++|-
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~ 120 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICH 120 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHH
Confidence 46666777899999999999984
No 298
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.53 E-value=0.004 Score=42.23 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=15.3
Q ss_pred eEEEcCCCCCCCcccccc
Q psy7782 35 VILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~ 52 (225)
+.+.|+||+|||++++..
T Consensus 2 i~i~G~~gsGKst~~~~l 19 (69)
T cd02019 2 IAITGGSGSGKSTVAKKL 19 (69)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 568899999999999743
No 299
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.53 E-value=0.0041 Score=50.77 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=19.8
Q ss_pred CCceeEEEcCCCCCCCcccccccC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~ 54 (225)
+..-+.|.||+|+|||++++.+++
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~ 27 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLE 27 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456788999999999999975544
No 300
>PRK08233 hypothetical protein; Provisional
Probab=95.52 E-value=0.0029 Score=50.34 Aligned_cols=18 Identities=22% Similarity=0.169 Sum_probs=15.0
Q ss_pred eeEEEcCCCCCCCccccc
Q psy7782 34 GVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 34 giLl~GppGtGKT~la~~ 51 (225)
=|.+.|+||+||||+|+.
T Consensus 5 iI~I~G~~GsGKtTla~~ 22 (182)
T PRK08233 5 IITIAAVSGGGKTTLTER 22 (182)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 356789999999999973
No 301
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.51 E-value=0.0038 Score=53.92 Aligned_cols=21 Identities=43% Similarity=0.645 Sum_probs=18.7
Q ss_pred CCCceeEEEcCCCCCCCcccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~ 50 (225)
...+.+||.||+|||||++++
T Consensus 31 ~~~~pvLl~G~~GtGKT~li~ 51 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLIQ 51 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHHH
T ss_pred HcCCcEEEECCCCCchhHHHH
Confidence 346899999999999999996
No 302
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.49 E-value=0.004 Score=53.93 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=16.9
Q ss_pred ceeEEEcCCCCCCCcccccc
Q psy7782 33 KGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~ 52 (225)
.=++|.|||||||||+|+..
T Consensus 3 ~liil~G~pGSGKSTla~~L 22 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREF 22 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999999843
No 303
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.48 E-value=0.0035 Score=50.06 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=17.6
Q ss_pred eeEEEcCCCCCCCcccccccC
Q psy7782 34 GVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~ 54 (225)
=++|.||+|+|||++++.+++
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999975544
No 304
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.48 E-value=0.0073 Score=49.99 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.0
Q ss_pred CCCCCceeEEEcCCCCCCCcccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~ 50 (225)
|++...=+.++||||||||++|.
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~ 37 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCL 37 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHH
Confidence 67777778899999999999985
No 305
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.44 E-value=0.003 Score=50.46 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=16.7
Q ss_pred eeEEEcCCCCCCCccccccc
Q psy7782 34 GVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~ 53 (225)
-+++.||||+|||++++.++
T Consensus 3 ~~~i~G~sGsGKttl~~~l~ 22 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYAR 22 (179)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999999997443
No 306
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=95.44 E-value=0.0077 Score=51.47 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=18.9
Q ss_pred CCCceeEEEcCCCCCCCcccccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~ 52 (225)
...+-+.++|++|+|||++|...
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~ 39 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQV 39 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeec
Confidence 45567789999999999999633
No 307
>KOG0990|consensus
Probab=95.41 E-value=0.0076 Score=52.93 Aligned_cols=17 Identities=53% Similarity=1.069 Sum_probs=15.3
Q ss_pred ceeEEEcCCCCCCCccc
Q psy7782 33 KGVILYGPPGTGKTLPF 49 (225)
Q Consensus 33 ~giLl~GppGtGKT~la 49 (225)
.+.|||||||||||+..
T Consensus 63 Ph~L~YgPPGtGktsti 79 (360)
T KOG0990|consen 63 PHLLFYGPPGTGKTSTI 79 (360)
T ss_pred CcccccCCCCCCCCCch
Confidence 39999999999999965
No 308
>PLN02459 probable adenylate kinase
Probab=95.41 E-value=0.0036 Score=53.69 Aligned_cols=31 Identities=23% Similarity=0.200 Sum_probs=21.8
Q ss_pred eeEEEcCCCCCCCcccccccC-CceeeccCCC
Q psy7782 34 GVILYGPPGTGKTLPFSPALG-YHYYCRGAGS 64 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~-~~~~~~~~~~ 64 (225)
-++|.||||+|||++|+..+. ..+..++.|+
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~is~gd 62 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHIATGD 62 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeCcH
Confidence 488999999999999974432 3344555554
No 309
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.39 E-value=0.0039 Score=52.86 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=19.4
Q ss_pred CceeEEEcCCCCCCCcccccccCC
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~ 55 (225)
.-=+-+.||+|||||||.+.++|.
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 334568899999999999877773
No 310
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.39 E-value=0.0068 Score=50.34 Aligned_cols=37 Identities=22% Similarity=0.146 Sum_probs=26.8
Q ss_pred CCCCCceeEEEcCCCCCCCcccc------cccCCceeeccCCC
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS------PALGYHYYCRGAGS 64 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~------~~~~~~~~~~~~~~ 64 (225)
|+++..-+++.||||+|||++|. ...|-+.+.++.-+
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 67778888999999999999874 22355555554444
No 311
>PRK09354 recA recombinase A; Provisional
Probab=95.39 E-value=0.0065 Score=54.27 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=19.1
Q ss_pred CCCCCceeEEEcCCCCCCCcccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~ 50 (225)
|++..+-+++|||||||||+||-
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal 78 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLAL 78 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHH
Confidence 46666667899999999999984
No 312
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.37 E-value=0.0053 Score=50.69 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=21.5
Q ss_pred CCCCCceeEEEcCCCCCCCcccccccC
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
.+.+..-+.+.||+|||||++..-++|
T Consensus 27 ~ia~ge~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred eecCCCEEEEEcCCCccHHHHHHHHhc
Confidence 345566678899999999999876666
No 313
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.34 E-value=0.005 Score=47.57 Aligned_cols=25 Identities=32% Similarity=0.268 Sum_probs=19.8
Q ss_pred CCCceeEEEcCCCCCCCcccccccC
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
.+..-++|.|+.|+|||++++..+.
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~ 44 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQ 44 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 4556688999999999999984443
No 314
>PRK10536 hypothetical protein; Provisional
Probab=95.32 E-value=0.004 Score=53.32 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=16.5
Q ss_pred ceeEEEcCCCCCCCccccc
Q psy7782 33 KGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~ 51 (225)
.-+++.||+|||||++|.+
T Consensus 75 ~lV~i~G~aGTGKT~La~a 93 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAA 93 (262)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4678999999999999964
No 315
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.31 E-value=0.0099 Score=56.00 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=27.2
Q ss_pred CCceeEEEcCCCCCCCcccccc------cCCceeeccCCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPA------LGYHYYCRGAGS 64 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~------~~~~~~~~~~~~ 64 (225)
....|||+|++|||||++|+++ .+.+|+.++.+.
T Consensus 218 ~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~ 257 (534)
T TIGR01817 218 SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAA 257 (534)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCC
Confidence 4568999999999999999732 457888877655
No 316
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.31 E-value=0.0084 Score=51.97 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=17.8
Q ss_pred CCceeEEEcCCCCCCCcccccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~ 52 (225)
.++-++|.||+|+||||++...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kL 214 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKL 214 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3456889999999999988633
No 317
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=95.31 E-value=0.0057 Score=56.07 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=23.6
Q ss_pred HHHHHcCCCCCceeEEEcCCCCCCCcccccccC
Q psy7782 22 EYYEEMGIKPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 22 ~~~~~~g~~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
.+..++ ...-+|||+.||||.||||+|++.+.
T Consensus 254 kl~eRL-~eraeGILIAG~PGaGKsTFaqAlAe 285 (604)
T COG1855 254 KLKERL-EERAEGILIAGAPGAGKSTFAQALAE 285 (604)
T ss_pred HHHHHH-HhhhcceEEecCCCCChhHHHHHHHH
Confidence 344444 24568999999999999999975443
No 318
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.30 E-value=0.0066 Score=48.46 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=19.0
Q ss_pred CCCceeEEEcCCCCCCCcccccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~ 52 (225)
..+.-++|.|+||+|||++|+..
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l 27 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKAL 27 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHH
Confidence 35567889999999999999743
No 319
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.26 E-value=0.0097 Score=52.44 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=18.8
Q ss_pred CCCCCceeEEEcCCCCCCCcccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~ 50 (225)
|++...-++++||||||||.+|.
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~l 114 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSH 114 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHH
Confidence 45655666899999999999984
No 320
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.25 E-value=0.0072 Score=50.20 Aligned_cols=17 Identities=47% Similarity=0.569 Sum_probs=15.3
Q ss_pred eeEEEcCCCCCCCcccc
Q psy7782 34 GVILYGPPGTGKTLPFS 50 (225)
Q Consensus 34 giLl~GppGtGKT~la~ 50 (225)
=++|.|+||+|||++|+
T Consensus 3 LiIlTGyPgsGKTtfak 19 (261)
T COG4088 3 LIILTGYPGSGKTTFAK 19 (261)
T ss_pred eEEEecCCCCCchHHHH
Confidence 37899999999999996
No 321
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=95.25 E-value=0.0054 Score=58.22 Aligned_cols=32 Identities=22% Similarity=0.499 Sum_probs=27.2
Q ss_pred CCCCCceeEEEcCCCCCCCcccccccC-Cceee
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFSPALG-YHYYC 59 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~~~~~-~~~~~ 59 (225)
.+++...+|+-||+|||||++.++++| +|+.+
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~ 447 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGLWPWGS 447 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhccCccCC
Confidence 456778899999999999999999999 56654
No 322
>PRK13808 adenylate kinase; Provisional
Probab=95.24 E-value=0.0039 Score=55.29 Aligned_cols=18 Identities=44% Similarity=0.778 Sum_probs=16.0
Q ss_pred eeEEEcCCCCCCCccccc
Q psy7782 34 GVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 34 giLl~GppGtGKT~la~~ 51 (225)
-|+|+||||+|||+++..
T Consensus 2 rIiv~GpPGSGK~T~a~~ 19 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQR 19 (333)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 389999999999999873
No 323
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.23 E-value=0.0026 Score=50.17 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=15.7
Q ss_pred eEEEcCCCCCCCccccccc--CCcee
Q psy7782 35 VILYGPPGTGKTLPFSPAL--GYHYY 58 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~~--~~~~~ 58 (225)
|.|.|+||||||||+++.+ |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAARGYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHHT-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHcCCeEE
Confidence 6899999999999997332 54443
No 324
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.22 E-value=0.015 Score=57.72 Aligned_cols=39 Identities=26% Similarity=0.355 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 4 DVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 4 ~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
++..+.|..++.--+. |-.+...+++|||||||||++++
T Consensus 761 EeEIeeLasfL~paIk--------gsgpnnvLYIyG~PGTGKTATVK 799 (1164)
T PTZ00112 761 EKEIKEVHGFLESGIK--------QSGSNQILYISGMPGTGKTATVY 799 (1164)
T ss_pred HHHHHHHHHHHHHHHh--------cCCCCceEEEECCCCCCHHHHHH
Confidence 4555555555544221 21232334699999999999885
No 325
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.21 E-value=0.0051 Score=49.29 Aligned_cols=17 Identities=41% Similarity=0.839 Sum_probs=14.4
Q ss_pred eeEEEcCCCCCCCcccc
Q psy7782 34 GVILYGPPGTGKTLPFS 50 (225)
Q Consensus 34 giLl~GppGtGKT~la~ 50 (225)
.++|.|+||+||||+++
T Consensus 1 ~i~iTG~pG~GKTTll~ 17 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLK 17 (168)
T ss_dssp EEEEES-TTSSHHHHHH
T ss_pred CEEEECcCCCCHHHHHH
Confidence 37999999999999985
No 326
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.21 E-value=0.0062 Score=58.69 Aligned_cols=18 Identities=44% Similarity=0.772 Sum_probs=15.4
Q ss_pred ceeEEEcCCCCCCCcccc
Q psy7782 33 KGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~ 50 (225)
.-+|++||||||||+++.
T Consensus 174 ~~~lI~GpPGTGKT~t~~ 191 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLV 191 (637)
T ss_pred CeEEEEcCCCCCHHHHHH
Confidence 467899999999999764
No 327
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.20 E-value=0.0079 Score=54.25 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=17.6
Q ss_pred CCCceeEEEcCCCCCCCcccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~ 50 (225)
....-++|.||+|+||||++.
T Consensus 135 ~~g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHH
Confidence 345678899999999999886
No 328
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.18 E-value=0.0038 Score=51.34 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=16.5
Q ss_pred eEEEcCCCCCCCcccccccC
Q psy7782 35 VILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~~~ 54 (225)
+.+.||+|+||||+++++++
T Consensus 9 i~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 9 IGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 45899999999999985543
No 329
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.18 E-value=0.012 Score=52.06 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=27.0
Q ss_pred CCceeEEEcCCCCCCCcccccc------cCCceeeccCCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPA------LGYHYYCRGAGS 64 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~------~~~~~~~~~~~~ 64 (225)
....|||+|++||||+++|+++ .+.+|+.++.+.
T Consensus 28 ~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~ 67 (326)
T PRK11608 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (326)
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCC
Confidence 4568999999999999999732 457888777665
No 330
>PF13173 AAA_14: AAA domain
Probab=95.18 E-value=0.0068 Score=45.97 Aligned_cols=21 Identities=43% Similarity=0.572 Sum_probs=17.6
Q ss_pred ceeEEEcCCCCCCCccccccc
Q psy7782 33 KGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~ 53 (225)
+-++|+||.|||||++++..+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~ 23 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLA 23 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467899999999999997443
No 331
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.13 E-value=0.014 Score=47.81 Aligned_cols=18 Identities=44% Similarity=0.708 Sum_probs=15.6
Q ss_pred ceeEEEcCCCCCCCcccc
Q psy7782 33 KGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~ 50 (225)
+-.++.||||||||++.+
T Consensus 19 ~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp SEEEEEESTTSTHHHHHH
T ss_pred eEEEEEECCCCCHHHHHH
Confidence 467889999999999875
No 332
>PRK14529 adenylate kinase; Provisional
Probab=95.12 E-value=0.006 Score=51.19 Aligned_cols=17 Identities=29% Similarity=0.759 Sum_probs=15.5
Q ss_pred eeEEEcCCCCCCCcccc
Q psy7782 34 GVILYGPPGTGKTLPFS 50 (225)
Q Consensus 34 giLl~GppGtGKT~la~ 50 (225)
.|+|.||||+||||+|+
T Consensus 2 ~I~l~G~PGsGK~T~a~ 18 (223)
T PRK14529 2 NILIFGPNGSGKGTQGA 18 (223)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 38899999999999996
No 333
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=95.12 E-value=0.0067 Score=47.41 Aligned_cols=22 Identities=41% Similarity=0.653 Sum_probs=18.9
Q ss_pred ceeEEEcCCCCCCCcccccccC
Q psy7782 33 KGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~ 54 (225)
+-++|.||.|||||+|+++..+
T Consensus 2 krimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcC
Confidence 4689999999999999986655
No 334
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.12 E-value=0.0044 Score=49.97 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=18.4
Q ss_pred ceeEEEcCCCCCCCcccccccC
Q psy7782 33 KGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~ 54 (225)
.-+.+.||+|||||++++..++
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999986555
No 335
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.12 E-value=0.011 Score=52.89 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=18.0
Q ss_pred CCCCCceeEEEcCCCCCCCcccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~ 50 (225)
|++...=..++||||||||.||-
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~l 144 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAH 144 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHH
Confidence 34555555799999999999985
No 336
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.11 E-value=0.0048 Score=52.23 Aligned_cols=17 Identities=41% Similarity=0.602 Sum_probs=15.4
Q ss_pred eEEEcCCCCCCCccccc
Q psy7782 35 VILYGPPGTGKTLPFSP 51 (225)
Q Consensus 35 iLl~GppGtGKT~la~~ 51 (225)
|+|.|+||+|||++|+.
T Consensus 2 Ivl~G~pGSGKST~a~~ 18 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKE 18 (249)
T ss_pred EEEEcCCCCCHHHHHHH
Confidence 68999999999999974
No 337
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.08 E-value=0.0055 Score=54.35 Aligned_cols=21 Identities=33% Similarity=0.608 Sum_probs=18.3
Q ss_pred CCCceeEEEcCCCCCCCcccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~ 50 (225)
..+.++||+||+|+|||++|.
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~ 40 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAE 40 (328)
T ss_pred CcceeeeeECCCCCCHHHHHH
Confidence 456799999999999999884
No 338
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.08 E-value=0.0055 Score=49.45 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=22.2
Q ss_pred CCCCCceeEEEcCCCCCCCcccccccC
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
.+.+.--+++.||+||||++|.+.++.
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHh
Confidence 355677899999999999999986654
No 339
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.06 E-value=0.017 Score=52.86 Aligned_cols=22 Identities=36% Similarity=0.564 Sum_probs=17.7
Q ss_pred CceeEEEcCCCCCCCccccccc
Q psy7782 32 PKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~ 53 (225)
+.-++|.||+|+||||++...+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA 244 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLA 244 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4458899999999999986443
No 340
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.06 E-value=0.0044 Score=47.06 Aligned_cols=28 Identities=36% Similarity=0.572 Sum_probs=23.1
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCCc
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~~ 56 (225)
+.+..-+.+.||+|+|||+|.+.++|..
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEccCCCccccceeeecccc
Confidence 3455677899999999999999888843
No 341
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.06 E-value=0.0044 Score=50.43 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=16.2
Q ss_pred eEEEcCCCCCCCcccccccC
Q psy7782 35 VILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~~~ 54 (225)
+.+.||+|+||||+++..++
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46889999999999975443
No 342
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.03 E-value=0.006 Score=54.03 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=18.7
Q ss_pred CCCceeEEEcCCCCCCCcccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~ 50 (225)
+.+.++||+||+|+|||++|.
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~ 39 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFAR 39 (325)
T ss_pred CcceEEEeECCCCCCHHHHHH
Confidence 567799999999999999885
No 343
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.03 E-value=0.0049 Score=50.55 Aligned_cols=18 Identities=33% Similarity=0.696 Sum_probs=15.6
Q ss_pred eeEEEcCCCCCCCccccc
Q psy7782 34 GVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 34 giLl~GppGtGKT~la~~ 51 (225)
-+++.||+|+||||++++
T Consensus 3 lilI~GptGSGKTTll~~ 20 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAA 20 (198)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999999864
No 344
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.98 E-value=0.0056 Score=58.38 Aligned_cols=19 Identities=32% Similarity=0.607 Sum_probs=16.7
Q ss_pred ceeEEEcCCCCCCCccccc
Q psy7782 33 KGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~ 51 (225)
..++|||++|||||+|+.+
T Consensus 315 NpL~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHA 333 (617)
T ss_pred CcEEEECCCCCCHHHHHHH
Confidence 4699999999999999863
No 345
>PRK13764 ATPase; Provisional
Probab=94.97 E-value=0.0059 Score=58.21 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=19.8
Q ss_pred CCCceeEEEcCCCCCCCccccccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~ 53 (225)
...+++|+.||||+||||++++++
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~AL~ 278 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQALA 278 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHH
Confidence 446899999999999999986433
No 346
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=94.96 E-value=0.0081 Score=47.28 Aligned_cols=19 Identities=37% Similarity=0.569 Sum_probs=17.6
Q ss_pred CceeEEEcCCCCCCCcccc
Q psy7782 32 PKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~ 50 (225)
.+|+||.||+|.|||++|.
T Consensus 14 g~gvLi~G~sG~GKStlal 32 (149)
T cd01918 14 GIGVLITGPSGIGKSELAL 32 (149)
T ss_pred CEEEEEEcCCCCCHHHHHH
Confidence 4799999999999999986
No 347
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.95 E-value=0.012 Score=49.96 Aligned_cols=55 Identities=25% Similarity=0.418 Sum_probs=38.8
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccc------cCCceeeccCCC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPA------LGYHYYCRGAGS 64 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~------~~~~~~~~~~~~ 64 (225)
+|++.+++.|.+.... |.. | .|-..+||+|.-|||||++++++ .|..++.+...+
T Consensus 63 ~Gvd~qk~~L~~NT~~-------F~~-G-~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 63 VGVDRQKEALVRNTEQ-------FAE-G-LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred hCchHHHHHHHHHHHH-------HHc-C-CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 5888888888766555 333 4 46689999999999999999743 334555554444
No 348
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.94 E-value=0.016 Score=56.33 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=26.1
Q ss_pred CCceeEEEcCCCCCCCccccc------ccCCceeeccCCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSP------ALGYHYYCRGAGS 64 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~------~~~~~~~~~~~~~ 64 (225)
....||++|++|||||++|++ ..+.+|+.++...
T Consensus 398 ~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~ 437 (686)
T PRK15429 398 SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 437 (686)
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEeccc
Confidence 456899999999999999973 2456787766543
No 349
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=94.94 E-value=0.0092 Score=48.01 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=19.3
Q ss_pred eEEEcCCCCCCCcccccc--cCCceee
Q psy7782 35 VILYGPPGTGKTLPFSPA--LGYHYYC 59 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~--~~~~~~~ 59 (225)
|.++|+||+|||++++.. .|.++++
T Consensus 2 i~itG~~gsGKst~~~~l~~~g~~~i~ 28 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKELGIPVID 28 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCEEe
Confidence 679999999999999733 5655554
No 350
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=94.94 E-value=0.0084 Score=47.17 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=20.7
Q ss_pred eEEEcCCCCCCCcccccc---cCCceeec
Q psy7782 35 VILYGPPGTGKTLPFSPA---LGYHYYCR 60 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~---~~~~~~~~ 60 (225)
|.++|+||+|||++|+.. .|.++++.
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 689999999999999733 56776653
No 351
>PRK04182 cytidylate kinase; Provisional
Probab=94.93 E-value=0.0085 Score=47.48 Aligned_cols=25 Identities=36% Similarity=0.594 Sum_probs=20.9
Q ss_pred eEEEcCCCCCCCcccccc---cCCceee
Q psy7782 35 VILYGPPGTGKTLPFSPA---LGYHYYC 59 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~---~~~~~~~ 59 (225)
|++.|+||||||++|+.. .|.++++
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 789999999999999743 4777776
No 352
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.92 E-value=0.005 Score=48.18 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=16.5
Q ss_pred eEEEcCCCCCCCcccccccC
Q psy7782 35 VILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~~~ 54 (225)
+++.|+||+|||++|+..++
T Consensus 2 i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 67999999999999974433
No 353
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.92 E-value=0.0063 Score=51.47 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=19.8
Q ss_pred CCceeEEEcCCCCCCCcccccccCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+..-+=+.||+||||||+++..+|.
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 3344458899999999999988873
No 354
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=94.90 E-value=0.0078 Score=45.78 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=20.3
Q ss_pred eEEEcCCCCCCCcccccccCCcee
Q psy7782 35 VILYGPPGTGKTLPFSPALGYHYY 58 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~~~~~~~ 58 (225)
+.|.||+|+|||+|.++..+.++.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~ 25 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS 25 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC
Confidence 678999999999999988776553
No 355
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.90 E-value=0.005 Score=47.93 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=19.1
Q ss_pred EEcCCCCCCCcccccccC-CceeeccCCC
Q psy7782 37 LYGPPGTGKTLPFSPALG-YHYYCRGAGS 64 (225)
Q Consensus 37 l~GppGtGKT~la~~~~~-~~~~~~~~~~ 64 (225)
+.||||+|||++|+.++. ..+..++.++
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~ 29 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGD 29 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHH
Confidence 579999999999974333 3444555444
No 356
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.89 E-value=0.011 Score=55.07 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=20.5
Q ss_pred CCCCCceeEEEcCCCCCCCcccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~ 50 (225)
|+.+..-+|+.||||+|||+|+.
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~ 281 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVS 281 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHH
Confidence 57788889999999999999984
No 357
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.89 E-value=0.012 Score=53.33 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 4 DVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 4 ~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
+++...+.+.+..-+..+..+ .+..++-++|.||+|+|||+++.
T Consensus 181 ~~v~~~~~~~L~~~l~~~~~~---~~~~~~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 181 DDITDWFVPYLSGKLAVEDSF---DLSNHRIISLIGQTGVGKTTTLV 224 (407)
T ss_pred HHHHHHHHHHhcCcEeeCCCc---eecCCeEEEEECCCCCCHHHHHH
Confidence 444555555555433333222 23456778899999999999875
No 358
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=94.86 E-value=0.013 Score=60.04 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=28.1
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~ 52 (225)
+|+++..++|...+.. +....+-+-++||+|+||||+|+++
T Consensus 187 vG~~~~l~~l~~lL~l-----------~~~~~~vvgI~G~gGiGKTTLA~~l 227 (1153)
T PLN03210 187 VGIEDHIAKMSSLLHL-----------ESEEVRMVGIWGSSGIGKTTIARAL 227 (1153)
T ss_pred cchHHHHHHHHHHHcc-----------ccCceEEEEEEcCCCCchHHHHHHH
Confidence 4666666666655532 2233456779999999999999754
No 359
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.85 E-value=0.0055 Score=50.36 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=18.3
Q ss_pred CCceeEEEcCCCCCCCccccccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~ 53 (225)
.+.-|.+.|||||||||+++.++
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~ 27 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIY 27 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 34567899999999999997443
No 360
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.79 E-value=0.013 Score=47.88 Aligned_cols=20 Identities=45% Similarity=0.953 Sum_probs=17.5
Q ss_pred CCceeEEEcCCCCCCCcccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~ 50 (225)
+...+++|||.|+|||++++
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHH
T ss_pred cCcEEEEEcCCcCCHHHHHH
Confidence 45789999999999999986
No 361
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.76 E-value=0.0058 Score=50.21 Aligned_cols=19 Identities=47% Similarity=0.821 Sum_probs=16.1
Q ss_pred CceeEEEcCCCCCCCcccc
Q psy7782 32 PKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~ 50 (225)
|+=++|.||+|+||||.+.
T Consensus 1 p~vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIA 19 (196)
T ss_dssp SEEEEEEESTTSSHHHHHH
T ss_pred CEEEEEECCCCCchHhHHH
Confidence 4568999999999999763
No 362
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.76 E-value=0.019 Score=53.79 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=26.7
Q ss_pred CCceeEEEcCCCCCCCcccccc------cCCceeeccCCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPA------LGYHYYCRGAGS 64 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~------~~~~~~~~~~~~ 64 (225)
....|||+|++|||||++|+++ .+.+|+.++.+.
T Consensus 209 ~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~ 248 (509)
T PRK05022 209 SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAA 248 (509)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEccc
Confidence 4578999999999999999732 456888776554
No 363
>PRK10867 signal recognition particle protein; Provisional
Probab=94.75 E-value=0.013 Score=53.81 Aligned_cols=20 Identities=35% Similarity=0.664 Sum_probs=17.2
Q ss_pred CCceeEEEcCCCCCCCcccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~ 50 (225)
+|.-+++.||||+||||++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaa 118 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAG 118 (433)
T ss_pred CCEEEEEECCCCCcHHHHHH
Confidence 46778999999999999764
No 364
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.75 E-value=0.013 Score=48.99 Aligned_cols=37 Identities=22% Similarity=0.215 Sum_probs=27.2
Q ss_pred CCCCCceeEEEcCCCCCCCcccc------ccc-CCceeeccCCC
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS------PAL-GYHYYCRGAGS 64 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~------~~~-~~~~~~~~~~~ 64 (225)
|+.+..-+++.||||+|||+++. +.. |.+++.++.-.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 67777788999999999999884 222 66666555444
No 365
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.75 E-value=0.0082 Score=49.72 Aligned_cols=16 Identities=31% Similarity=0.731 Sum_probs=14.4
Q ss_pred eEEEcCCCCCCCcccc
Q psy7782 35 VILYGPPGTGKTLPFS 50 (225)
Q Consensus 35 iLl~GppGtGKT~la~ 50 (225)
++++|+||||||++++
T Consensus 1 ~vv~G~pGsGKSt~i~ 16 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIK 16 (234)
T ss_pred CEEEcCCCCCHHHHHH
Confidence 4789999999999886
No 366
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=94.70 E-value=0.013 Score=55.26 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=26.9
Q ss_pred CCceeEEEcCCCCCCCcccccc--------------cCCceeeccCCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPA--------------LGYHYYCRGAGS 64 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~--------------~~~~~~~~~~~~ 64 (225)
....||++|++||||+++|+++ .+.||+.++.+.
T Consensus 241 s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaa 288 (538)
T PRK15424 241 SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGA 288 (538)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeeccc
Confidence 4568999999999999999732 346888887664
No 367
>PRK06696 uridine kinase; Validated
Probab=94.70 E-value=0.02 Score=47.72 Aligned_cols=20 Identities=30% Similarity=0.297 Sum_probs=17.1
Q ss_pred CCceeEEEcCCCCCCCcccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~ 50 (225)
.+.=|.+.|+||+||||+|+
T Consensus 21 ~~~iI~I~G~sgsGKSTlA~ 40 (223)
T PRK06696 21 RPLRVAIDGITASGKTTFAD 40 (223)
T ss_pred CceEEEEECCCCCCHHHHHH
Confidence 34567799999999999996
No 368
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=94.69 E-value=0.01 Score=55.53 Aligned_cols=23 Identities=43% Similarity=0.849 Sum_probs=19.5
Q ss_pred CceeEEEcCCCCCCCcccccccC
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~ 54 (225)
...++|+||||||||++++.+.+
T Consensus 211 g~~vlliG~pGsGKTtlar~l~~ 233 (499)
T TIGR00368 211 GHNLLLFGPPGSGKTMLASRLQG 233 (499)
T ss_pred CCEEEEEecCCCCHHHHHHHHhc
Confidence 35699999999999999986554
No 369
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.67 E-value=0.0079 Score=47.79 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=14.4
Q ss_pred eEEEcCCCCCCCcccc
Q psy7782 35 VILYGPPGTGKTLPFS 50 (225)
Q Consensus 35 iLl~GppGtGKT~la~ 50 (225)
+++.||||+|||++++
T Consensus 3 ~~~~G~~G~GKTt~~~ 18 (173)
T cd03115 3 ILLVGLQGVGKTTTAA 18 (173)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999999975
No 370
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.65 E-value=0.013 Score=48.46 Aligned_cols=18 Identities=50% Similarity=0.650 Sum_probs=13.7
Q ss_pred ceeEEEcCCCCCCCcccc
Q psy7782 33 KGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~ 50 (225)
.=+.+.||+|||||++|-
T Consensus 20 ~~v~~~G~AGTGKT~LA~ 37 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLAL 37 (205)
T ss_dssp SEEEEE--TTSSTTHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 367899999999999984
No 371
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=94.63 E-value=0.017 Score=54.13 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=30.1
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
+|.+.+...|...+.. . +...+.||.||-|||||++|+
T Consensus 19 vGQe~v~~~L~nal~~--------~----ri~hAYlfsG~RGvGKTt~Ar 56 (515)
T COG2812 19 VGQEHVVKTLSNALEN--------G----RIAHAYLFSGPRGVGKTTIAR 56 (515)
T ss_pred cccHHHHHHHHHHHHh--------C----cchhhhhhcCCCCcCchhHHH
Confidence 5777788877777766 1 334699999999999999886
No 372
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.62 E-value=0.014 Score=39.08 Aligned_cols=17 Identities=29% Similarity=0.628 Sum_probs=15.3
Q ss_pred eeEEEcCCCCCCCcccc
Q psy7782 34 GVILYGPPGTGKTLPFS 50 (225)
Q Consensus 34 giLl~GppGtGKT~la~ 50 (225)
-.+|+||.|+|||++..
T Consensus 25 ~tli~G~nGsGKSTllD 41 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLD 41 (62)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 38999999999999874
No 373
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.61 E-value=0.0083 Score=49.47 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=22.3
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||||++.++|.
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 345556779999999999999988885
No 374
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=94.60 E-value=0.011 Score=50.37 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=19.1
Q ss_pred CCceeEEEcCCCCCCCccccccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~ 53 (225)
...-++++||+|||||++++.++
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~ 37 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIA 37 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999999997444
No 375
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=94.59 E-value=0.018 Score=52.30 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=28.3
Q ss_pred CCceeEEEcCCCCCCCcccc------cc-cCCceeeccCCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFS------PA-LGYHYYCRGAGS 64 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~------~~-~~~~~~~~~~~~ 64 (225)
....+|++|++||||+++|+ +- .+.||+.++.+.
T Consensus 100 ~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~ 140 (403)
T COG1221 100 SGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAA 140 (403)
T ss_pred CCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHH
Confidence 45789999999999999995 22 678999888766
No 376
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.58 E-value=0.0058 Score=45.01 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=19.0
Q ss_pred eEEEcCCCCCCCcccccccCCcee
Q psy7782 35 VILYGPPGTGKTLPFSPALGYHYY 58 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~~~~~~~ 58 (225)
|++.|++|+|||+|.++.++.++.
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 788999999999999876665554
No 377
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.58 E-value=0.0083 Score=47.82 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=18.4
Q ss_pred CceeEEEcCCCCCCCcccccccC
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~ 54 (225)
..-+.|.|+||+|||++|+..++
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999974443
No 378
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.58 E-value=0.014 Score=53.90 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=25.7
Q ss_pred CCCCCceeEEEcCCCCCCCccccc------ccCCceeeccCC
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFSP------ALGYHYYCRGAG 63 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~~------~~~~~~~~~~~~ 63 (225)
|+.+..-+|++||||+|||+++.. ..+.+++.++.-
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E 117 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE 117 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 577777889999999999998852 224555555443
No 379
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.57 E-value=0.013 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=19.5
Q ss_pred CCCceeEEEcCCCCCCCcccccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~ 52 (225)
...+++|+.||+|+|||+++++.
T Consensus 130 ~~~~~ilI~G~tGSGKTTll~al 152 (299)
T TIGR02782 130 LARKNILVVGGTGSGKTTLANAL 152 (299)
T ss_pred HcCCeEEEECCCCCCHHHHHHHH
Confidence 45679999999999999998643
No 380
>KOG0060|consensus
Probab=94.52 E-value=0.013 Score=55.13 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=22.7
Q ss_pred CCCCceeEEEcCCCCCCCcccccccC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
++....+|+.||+|||||+|.+..+|
T Consensus 458 V~~g~~LLItG~sG~GKtSLlRvlgg 483 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTSLLRVLGG 483 (659)
T ss_pred ecCCCeEEEECCCCCchhHHHHHHhc
Confidence 45567899999999999999997777
No 381
>KOG2680|consensus
Probab=94.51 E-value=0.017 Score=50.65 Aligned_cols=37 Identities=24% Similarity=0.364 Sum_probs=27.2
Q ss_pred CCCCCceeEEEcCCCCCCCccccccc---C--CceeeccCCC
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFSPAL---G--YHYYCRGAGS 64 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~~~~---~--~~~~~~~~~~ 64 (225)
|.-..+.+|+-|+||||||.+|-.++ | .||.++.+++
T Consensus 62 gkiaGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSE 103 (454)
T KOG2680|consen 62 GKIAGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSE 103 (454)
T ss_pred CcccceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecce
Confidence 44467899999999999999984222 2 5666666666
No 382
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.50 E-value=0.01 Score=43.79 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=23.7
Q ss_pred eEEEcCCCCCCCcccccccCCceeeccCCCC
Q psy7782 35 VILYGPPGTGKTLPFSPALGYHYYCRGAGSN 65 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~~~~~~~~~~~~~~ 65 (225)
|++.|+||+|||+|..+.++......+...+
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~ 32 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKKLAKVSNIPG 32 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTSTSSEESSSTT
T ss_pred EEEECCCCCCHHHHHHHHhcccccccccccc
Confidence 6899999999999999888865444444433
No 383
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.50 E-value=0.016 Score=54.32 Aligned_cols=37 Identities=22% Similarity=0.126 Sum_probs=27.2
Q ss_pred CCCCCceeEEEcCCCCCCCcccc------ccc-CCceeeccCCC
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS------PAL-GYHYYCRGAGS 64 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~------~~~-~~~~~~~~~~~ 64 (225)
|+++..-+|++|+||+|||+|+. +.. |-+.+.++.-+
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee 70 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEE 70 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccC
Confidence 67888889999999999999985 222 44555555444
No 384
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.50 E-value=0.017 Score=52.35 Aligned_cols=20 Identities=40% Similarity=0.655 Sum_probs=17.2
Q ss_pred CCceeEEEcCCCCCCCcccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~ 50 (225)
.++-++|+||+|+||||.++
T Consensus 173 ~~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35678999999999999875
No 385
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.012 Score=49.50 Aligned_cols=43 Identities=23% Similarity=0.390 Sum_probs=33.0
Q ss_pred HHHHHcCCCCCcee--EEEcCCCCCCCcccccccCCceeeccCCC
Q psy7782 22 EYYEEMGIKPPKGV--ILYGPPGTGKTLPFSPALGYHYYCRGAGS 64 (225)
Q Consensus 22 ~~~~~~g~~~~~gi--Ll~GppGtGKT~la~~~~~~~~~~~~~~~ 64 (225)
+.++...+....|= -+.||.|+|||||+...+|.+-|.+..|+
T Consensus 18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~ 62 (251)
T COG0396 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGE 62 (251)
T ss_pred hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecce
Confidence 44444444433333 47899999999999999999999999888
No 386
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.49 E-value=0.011 Score=52.59 Aligned_cols=30 Identities=23% Similarity=0.542 Sum_probs=20.9
Q ss_pred HHHHHcCCCCCceeEEEcCCCCCCCccccc
Q psy7782 22 EYYEEMGIKPPKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 22 ~~~~~~g~~~~~giLl~GppGtGKT~la~~ 51 (225)
+.+.++-..+..-+|+.||+|+||||+.++
T Consensus 112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l~a 141 (343)
T TIGR01420 112 PVLRELAERPRGLILVTGPTGSGKSTTLAS 141 (343)
T ss_pred HHHHHHHhhcCcEEEEECCCCCCHHHHHHH
Confidence 344444333445668999999999998864
No 387
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.48 E-value=0.011 Score=49.31 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=22.6
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||+|++.++|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 445566889999999999999988874
No 388
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=94.47 E-value=0.03 Score=45.42 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=22.0
Q ss_pred CCceeEEEcCCCCCCCcccccccCCce
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
+..-+++.|+||+|||+|....++..+
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~ 66 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADV 66 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchh
Confidence 345789999999999999987777653
No 389
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.47 E-value=0.011 Score=48.20 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=18.1
Q ss_pred CCceeEEEcCCCCCCCcccccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~ 52 (225)
.++=++|.||||+|||++++.+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l 24 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQAL 24 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3566889999999999999633
No 390
>PRK06851 hypothetical protein; Provisional
Probab=94.45 E-value=0.14 Score=46.21 Aligned_cols=20 Identities=40% Similarity=0.579 Sum_probs=17.3
Q ss_pred CCceeEEEcCCCCCCCcccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~ 50 (225)
..+-++|.||||||||++.+
T Consensus 29 ~~~~~il~G~pGtGKStl~~ 48 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMK 48 (367)
T ss_pred cceEEEEECCCCCCHHHHHH
Confidence 34568999999999999986
No 391
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.45 E-value=0.0092 Score=46.04 Aligned_cols=20 Identities=35% Similarity=0.674 Sum_probs=16.8
Q ss_pred eEEEcCCCCCCCcccccccC
Q psy7782 35 VILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~~~ 54 (225)
+.|.||+|+|||++++.++.
T Consensus 2 i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 57889999999999985554
No 392
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.45 E-value=0.022 Score=50.32 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=19.5
Q ss_pred CCCCCceeEEEcCCCCCCCccccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~~ 51 (225)
|+.+..=+.++||||+|||+++..
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~ 115 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHT 115 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHH
Confidence 456666678999999999999963
No 393
>PTZ00035 Rad51 protein; Provisional
Probab=94.44 E-value=0.02 Score=51.04 Aligned_cols=23 Identities=35% Similarity=0.342 Sum_probs=18.5
Q ss_pred CCCCCceeEEEcCCCCCCCcccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~ 50 (225)
|++...-+.++||||||||+++.
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~ 136 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCH 136 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHH
Confidence 35555556799999999999986
No 394
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=94.44 E-value=0.012 Score=46.24 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=21.5
Q ss_pred CceeEEEcCCCCCCCcccccccCCce
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
..-+++.||+|+|||+|.....+..+
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~ 39 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDI 39 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCC
Confidence 35689999999999999987777544
No 395
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=94.39 E-value=0.028 Score=52.99 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=27.3
Q ss_pred CCceeEEEcCCCCCCCccccc------ccCCceeeccCCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSP------ALGYHYYCRGAGS 64 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~------~~~~~~~~~~~~~ 64 (225)
....||++|++||||+++|++ -.+.||+.++.+.
T Consensus 234 ~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~ 273 (526)
T TIGR02329 234 SDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGA 273 (526)
T ss_pred CCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEecccc
Confidence 457899999999999999973 2457888887664
No 396
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=94.39 E-value=0.016 Score=44.28 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=22.1
Q ss_pred eeEEEcCCCCCCCcccccccCCceeec
Q psy7782 34 GVILYGPPGTGKTLPFSPALGYHYYCR 60 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~~~~~~~ 60 (225)
-+.+.|+||+|||+++.+.++.++...
T Consensus 5 ~i~~~G~~g~GKttl~~~l~~~~~~~~ 31 (168)
T cd04163 5 FVAIVGRPNVGKSTLLNALVGQKISIV 31 (168)
T ss_pred EEEEECCCCCCHHHHHHHHhCCceEec
Confidence 478999999999999998877665433
No 397
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.39 E-value=0.015 Score=47.52 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=17.1
Q ss_pred CCCceeEEEcCCCCCCCcccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~ 50 (225)
..|.-+++-||||+|||+++.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~ 33 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLAR 33 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHH
Confidence 467899999999999999986
No 398
>PRK14974 cell division protein FtsY; Provisional
Probab=94.38 E-value=0.024 Score=50.46 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=17.0
Q ss_pred CCceeEEEcCCCCCCCcccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~ 50 (225)
.+.-++|.||||+||||+++
T Consensus 139 ~~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHH
Confidence 35678999999999999765
No 399
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.38 E-value=0.023 Score=49.63 Aligned_cols=43 Identities=19% Similarity=0.311 Sum_probs=28.8
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
||+....+.+...-.+ +.+|.. ....++||+|++|.|||++++
T Consensus 37 IgY~~A~~~L~~L~~L-l~~P~~------~Rmp~lLivG~snnGKT~Ii~ 79 (302)
T PF05621_consen 37 IGYPRAKEALDRLEEL-LEYPKR------HRMPNLLIVGDSNNGKTMIIE 79 (302)
T ss_pred ecCHHHHHHHHHHHHH-HhCCcc------cCCCceEEecCCCCcHHHHHH
Confidence 4666666665555554 444432 223479999999999999985
No 400
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.37 E-value=0.011 Score=47.24 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=22.9
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.+.||+|+|||+|++.++|.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 455667789999999999999988885
No 401
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.37 E-value=0.0089 Score=49.19 Aligned_cols=23 Identities=26% Similarity=0.163 Sum_probs=18.3
Q ss_pred CceeEEEcCCCCCCCcccccccC
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~ 54 (225)
+.=+++.|+||+|||++|+..+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~ 25 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIAR 25 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999974433
No 402
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.37 E-value=0.011 Score=49.49 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=22.0
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||||++.++|.
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344556779999999999999988884
No 403
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.35 E-value=0.012 Score=50.84 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.2
Q ss_pred CceeEEEcCCCCCCCcccccccC
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~ 54 (225)
..++++.||||+||||+.+..++
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~ 133 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLAR 133 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhC
Confidence 36899999999999999986666
No 404
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.34 E-value=0.011 Score=48.43 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=22.5
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||+|.+.++|.
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 445566789999999999999988884
No 405
>KOG1533|consensus
Probab=94.34 E-value=0.028 Score=47.53 Aligned_cols=30 Identities=30% Similarity=0.513 Sum_probs=22.9
Q ss_pred ceeEEEcCCCCCCCcccc------cccCCceeeccC
Q psy7782 33 KGVILYGPPGTGKTLPFS------PALGYHYYCRGA 62 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~------~~~~~~~~~~~~ 62 (225)
-|.+..||||+||||.+. +..|.+++.++.
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNL 38 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNL 38 (290)
T ss_pred cceEEEcCCCCCccchhhhHHHHHHHhCCceEEEec
Confidence 478899999999999884 566766655543
No 406
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.34 E-value=0.012 Score=48.28 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=22.3
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||||++.++|.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 344555779999999999999988885
No 407
>KOG1802|consensus
Probab=94.34 E-value=0.04 Score=52.73 Aligned_cols=54 Identities=20% Similarity=0.243 Sum_probs=32.0
Q ss_pred EEEcCCCCCCCcccc-------cccCCceeeccCCCCCCccchhhhhhcCCCCCCccccccc
Q psy7782 36 ILYGPPGTGKTLPFS-------PALGYHYYCRGAGSNSDKKDDKDKKKKYEPPIPTRVGKKK 90 (225)
Q Consensus 36 Ll~GppGtGKT~la~-------~~~~~~~~~~~~~~~~~~~~~f~~a~~~~p~iid~igk~r 90 (225)
|+-||||||||...+ ...+.+++..-+++ -++-.+-++..+..=-|+-..+|+|
T Consensus 429 LIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSN-iAVDqLaeKIh~tgLKVvRl~aksR 489 (935)
T KOG1802|consen 429 LIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSN-IAVDQLAEKIHKTGLKVVRLCAKSR 489 (935)
T ss_pred eeecCCCCCceehhHHHHHHHHHhcCCceEEEcccc-hhHHHHHHHHHhcCceEeeeehhhh
Confidence 789999999999764 22345555444444 4445555555555533344445554
No 408
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.32 E-value=0.025 Score=51.48 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=18.3
Q ss_pred CceeEEEcCCCCCCCccccccc
Q psy7782 32 PKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~ 53 (225)
++-++|.||+|+||||++..++
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA 262 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMA 262 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHH
Confidence 5678999999999999886443
No 409
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.32 E-value=0.016 Score=51.26 Aligned_cols=24 Identities=21% Similarity=0.517 Sum_probs=20.3
Q ss_pred CCCceeEEEcCCCCCCCccccccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~ 53 (225)
...+.+++.||+|+|||+++++.+
T Consensus 146 ~~~~~ilI~G~tGSGKTTll~aL~ 169 (319)
T PRK13894 146 RAHRNILVIGGTGSGKTTLVNAII 169 (319)
T ss_pred HcCCeEEEECCCCCCHHHHHHHHH
Confidence 456899999999999999987544
No 410
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.27 E-value=0.016 Score=51.39 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=19.3
Q ss_pred CCCceeEEEcCCCCCCCcccccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~ 52 (225)
...+++|+.||+|+|||+++++.
T Consensus 142 ~~~~nilI~G~tGSGKTTll~aL 164 (323)
T PRK13833 142 DSRLNIVISGGTGSGKTTLANAV 164 (323)
T ss_pred HcCCeEEEECCCCCCHHHHHHHH
Confidence 44679999999999999998643
No 411
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.26 E-value=0.022 Score=52.33 Aligned_cols=19 Identities=42% Similarity=0.607 Sum_probs=16.2
Q ss_pred CceeEEEcCCCCCCCcccc
Q psy7782 32 PKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~ 50 (225)
.+-++|.||+|+||||++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLA 239 (424)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4578899999999999764
No 412
>KOG0745|consensus
Probab=94.23 E-value=0.019 Score=52.50 Aligned_cols=27 Identities=37% Similarity=0.598 Sum_probs=22.2
Q ss_pred CceeEEEcCCCCCCCcccc---cccCCcee
Q psy7782 32 PKGVILYGPPGTGKTLPFS---PALGYHYY 58 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~---~~~~~~~~ 58 (225)
...|||.||.|+|||+||+ ...+.||.
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfa 255 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFA 255 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeE
Confidence 4689999999999999996 45566666
No 413
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=94.22 E-value=0.012 Score=45.11 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=18.8
Q ss_pred eEEEcCCCCCCCcccccccCCc
Q psy7782 35 VILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~~~~~ 56 (225)
+++.||||+|||+|+.+..+..
T Consensus 2 i~i~G~~~~GKTsli~~l~~~~ 23 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKGT 23 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999998776554
No 414
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=94.22 E-value=0.013 Score=45.33 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=19.8
Q ss_pred eeEEEcCCCCCCCcccccccCCce
Q psy7782 34 GVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~~~~ 57 (225)
-+++.|+||+|||+++.+..+..+
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~ 25 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKF 25 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 378999999999999987766554
No 415
>KOG2383|consensus
Probab=94.22 E-value=0.023 Score=51.46 Aligned_cols=20 Identities=55% Similarity=1.041 Sum_probs=18.2
Q ss_pred CCCceeEEEcCCCCCCCccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPF 49 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la 49 (225)
.+|+|+.|||.-|||||+|-
T Consensus 112 ~~PkGlYlYG~VGcGKTmLM 131 (467)
T KOG2383|consen 112 GPPKGLYLYGSVGCGKTMLM 131 (467)
T ss_pred CCCceEEEecccCcchhHHH
Confidence 46999999999999999974
No 416
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.20 E-value=0.013 Score=49.06 Aligned_cols=27 Identities=37% Similarity=0.535 Sum_probs=22.1
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||||++.++|.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 444556779999999999999988874
No 417
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.20 E-value=0.012 Score=48.26 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=22.1
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||||++.++|.
T Consensus 25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 25 IRKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344455779999999999999988885
No 418
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.18 E-value=0.012 Score=48.96 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=22.8
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||||++.++|.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455667789999999999999988884
No 419
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.17 E-value=0.012 Score=48.39 Aligned_cols=27 Identities=30% Similarity=0.381 Sum_probs=22.0
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||||++.++|.
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 344455779999999999999988884
No 420
>PRK04296 thymidine kinase; Provisional
Probab=94.14 E-value=0.015 Score=47.43 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=14.5
Q ss_pred eeEEEcCCCCCCCcccc
Q psy7782 34 GVILYGPPGTGKTLPFS 50 (225)
Q Consensus 34 giLl~GppGtGKT~la~ 50 (225)
=.+++||||+|||+++.
T Consensus 4 i~litG~~GsGKTT~~l 20 (190)
T PRK04296 4 LEFIYGAMNSGKSTELL 20 (190)
T ss_pred EEEEECCCCCHHHHHHH
Confidence 36899999999999873
No 421
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=94.12 E-value=0.018 Score=44.49 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=20.1
Q ss_pred eEEEcCCCCCCCcccccccCCcee
Q psy7782 35 VILYGPPGTGKTLPFSPALGYHYY 58 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~~~~~~~ 58 (225)
+++.|+||+|||+++.+..+..+.
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~~~ 25 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAELV 25 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCcc
Confidence 688999999999999877766554
No 422
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.12 E-value=0.012 Score=48.12 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=22.3
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||+|++.++|.
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 344556789999999999999988884
No 423
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.11 E-value=0.019 Score=51.30 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=19.0
Q ss_pred CCCceeEEEcCCCCCCCcccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~ 50 (225)
..+.++||+||+|+||+++|.
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~ 39 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQ 39 (342)
T ss_pred CcceEEEEECCCCCCHHHHHH
Confidence 567899999999999999885
No 424
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.07 E-value=0.014 Score=48.24 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=22.2
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||+|++.++|.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 445556789999999999999988774
No 425
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.05 E-value=0.015 Score=47.81 Aligned_cols=27 Identities=33% Similarity=0.635 Sum_probs=22.2
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||||++.++|.
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 344556789999999999999988885
No 426
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.05 E-value=0.0091 Score=49.08 Aligned_cols=30 Identities=13% Similarity=0.297 Sum_probs=22.5
Q ss_pred HHcCCCCCceeEEEcCCCCCCCcccccccC
Q psy7782 25 EEMGIKPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 25 ~~~g~~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
..+.+...+-++|.||+|+|||++.+.+++
T Consensus 18 n~i~l~~g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 18 NDIDMEKKNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred ceEEEcCCcEEEEECCCCCChHHHHHHHHH
Confidence 333444456789999999999999986654
No 427
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=94.05 E-value=0.02 Score=51.68 Aligned_cols=23 Identities=39% Similarity=0.806 Sum_probs=20.0
Q ss_pred CCCCCceeEEEcCCCCCCCcccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~ 50 (225)
|++...-+++||||.||||+++-
T Consensus 258 g~PKKnClvi~GPPdTGKS~F~~ 280 (432)
T PF00519_consen 258 GIPKKNCLVIYGPPDTGKSMFCM 280 (432)
T ss_dssp TBTTSSEEEEESSCCCSHHHHHH
T ss_pred CCCcccEEEEECCCCCchhHHHH
Confidence 56777888999999999999883
No 428
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.05 E-value=0.029 Score=50.09 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=18.7
Q ss_pred CCCCCceeEEEcCCCCCCCcccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~ 50 (225)
|+.+..=++++||||||||.+|-
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~ 141 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCH 141 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHH
Confidence 45555666799999999999985
No 429
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.04 E-value=0.012 Score=52.51 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=21.4
Q ss_pred CCCCceeEEEcCCCCCCCcccccccC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
+...+.+|+.||+|+|||+++++.++
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~ 184 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLIS 184 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHc
Confidence 45678999999999999999874443
No 430
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.04 E-value=0.014 Score=48.08 Aligned_cols=27 Identities=33% Similarity=0.434 Sum_probs=22.1
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||||++.++|.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344556779999999999999988884
No 431
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.04 E-value=0.016 Score=48.47 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=22.6
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||||++.++|.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 23 VKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344455789999999999999999886
No 432
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.04 E-value=0.014 Score=47.12 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=22.1
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||+|++.++|.
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 445556779999999999999988884
No 433
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=94.03 E-value=0.015 Score=44.62 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=20.3
Q ss_pred eeEEEcCCCCCCCcccccccCCcee
Q psy7782 34 GVILYGPPGTGKTLPFSPALGYHYY 58 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~~~~~ 58 (225)
-+++.|+||+|||+|+.+..+-.|.
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~~ 27 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHFV 27 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc
Confidence 3788999999999999877665553
No 434
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.03 E-value=0.021 Score=51.59 Aligned_cols=31 Identities=26% Similarity=0.449 Sum_probs=23.2
Q ss_pred ChHHHHHc--CCCCCceeEEEcCCCCCCCcccc
Q psy7782 20 HPEYYEEM--GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 20 ~~~~~~~~--g~~~~~giLl~GppGtGKT~la~ 50 (225)
.+++-.-+ |+.+..-+|++||||+|||+++.
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLll 100 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLL 100 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHH
Confidence 34444433 47777778999999999999885
No 435
>PRK12338 hypothetical protein; Provisional
Probab=94.01 E-value=0.016 Score=51.09 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=17.5
Q ss_pred CCceeEEEcCCCCCCCcccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~ 50 (225)
.|.-+++.|+||||||++|+
T Consensus 3 ~p~ii~i~G~sGsGKST~a~ 22 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIAS 22 (319)
T ss_pred CcEEEEEECCCCCCHHHHHH
Confidence 35678999999999999996
No 436
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.00 E-value=0.014 Score=47.74 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=22.1
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||||.+.++|.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 344455789999999999999988884
No 437
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.99 E-value=0.016 Score=48.41 Aligned_cols=27 Identities=37% Similarity=0.604 Sum_probs=21.9
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||||++.++|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 344455779999999999999988884
No 438
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=93.99 E-value=0.015 Score=48.90 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=22.2
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||||++.++|.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344556789999999999999988884
No 439
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=93.99 E-value=0.017 Score=52.81 Aligned_cols=22 Identities=36% Similarity=0.693 Sum_probs=18.9
Q ss_pred CCCceeEEEcCCCCCCCccccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~ 51 (225)
....++++.||||||||++|.+
T Consensus 207 e~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHH
Confidence 3457999999999999999864
No 440
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.98 E-value=0.014 Score=45.22 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=22.4
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.+.||+|+|||+|++..+|.
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 455567789999999999999988774
No 441
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=93.98 E-value=0.018 Score=47.21 Aligned_cols=26 Identities=19% Similarity=0.091 Sum_probs=20.1
Q ss_pred eeEEEcCCCCCCCcccc--cc-cCCceee
Q psy7782 34 GVILYGPPGTGKTLPFS--PA-LGYHYYC 59 (225)
Q Consensus 34 giLl~GppGtGKT~la~--~~-~~~~~~~ 59 (225)
-|.+.||+|+|||++++ +. .|.++++
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~ 31 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILD 31 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEee
Confidence 37799999999999997 33 3666663
No 442
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=93.96 E-value=0.015 Score=48.36 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=22.3
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||+|++.++|.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 345556789999999999999988884
No 443
>PF01057 Parvo_NS1: Parvovirus non-structural protein NS1; InterPro: IPR001257 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This entry represents the helicase domain of the Parvovirus NS1 protein; which is required for viral DNA replication []. This domain contains the ATP/GTP-binding site motif A (P-loop). Parvoviral NS1 also regulates host gene expression through histone acetylation []. ; GO: 0019079 viral genome replication; PDB: 3P0S_A 1S9H_A 1U0J_A.
Probab=93.93 E-value=0.027 Score=48.62 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=20.4
Q ss_pred CCCceeEEEcCCCCCCCcccccccC
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
.+...+.|||||+||||.+|.++++
T Consensus 111 ~krNti~~~Gp~~tGKt~la~aI~~ 135 (271)
T PF01057_consen 111 GKRNTIWFYGPASTGKTNLADAIAN 135 (271)
T ss_dssp TT--EEEEESTTTSSHCHCHHCCCH
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHH
Confidence 4567899999999999999987766
No 444
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=93.93 E-value=0.017 Score=45.66 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=20.9
Q ss_pred ceeEEEcCCCCCCCcccccccCCcee
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHYY 58 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~~ 58 (225)
+.++|.|+||+|||+|+.+..+..+.
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~ 27 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFV 27 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc
Confidence 46899999999999999866665443
No 445
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=93.91 E-value=0.034 Score=49.15 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=18.3
Q ss_pred CCCceeEEEcCCCCCCCcccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~ 50 (225)
..+.++||+||+|+||+++|.
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~ 44 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVAL 44 (319)
T ss_pred CcceeEeeECCCCCCHHHHHH
Confidence 456789999999999999884
No 446
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=93.91 E-value=0.014 Score=48.13 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=22.3
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||||.+.++|.
T Consensus 28 i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 28 IGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 445556779999999999999988885
No 447
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=93.91 E-value=0.016 Score=44.92 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=20.1
Q ss_pred eeEEEcCCCCCCCcccccccCCcee
Q psy7782 34 GVILYGPPGTGKTLPFSPALGYHYY 58 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~~~~~ 58 (225)
-|++.|+||+|||+|+.+..+..+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~ 26 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFV 26 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC
Confidence 3788999999999999877665543
No 448
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=93.91 E-value=0.017 Score=44.64 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=20.3
Q ss_pred eeEEEcCCCCCCCcccccccCCcee
Q psy7782 34 GVILYGPPGTGKTLPFSPALGYHYY 58 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~~~~~ 58 (225)
.|++.|+||+|||+|+.+.++..+.
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~ 26 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFV 26 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCC
Confidence 3789999999999999877665543
No 449
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.91 E-value=0.015 Score=46.22 Aligned_cols=27 Identities=37% Similarity=0.613 Sum_probs=22.8
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||+|.+.++|.
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence 455667789999999999999988885
No 450
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.90 E-value=0.014 Score=46.23 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=22.8
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||+|.+.++|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455667789999999999999988874
No 451
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.90 E-value=0.018 Score=46.51 Aligned_cols=16 Identities=44% Similarity=0.567 Sum_probs=14.6
Q ss_pred eEEEcCCCCCCCcccc
Q psy7782 35 VILYGPPGTGKTLPFS 50 (225)
Q Consensus 35 iLl~GppGtGKT~la~ 50 (225)
|.+.|+||+|||++|+
T Consensus 2 i~i~G~sgsGKttla~ 17 (179)
T cd02028 2 VGIAGPSGSGKTTFAK 17 (179)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5789999999999997
No 452
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=93.89 E-value=0.016 Score=49.00 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=22.5
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||||++.++|.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 23 VAAGEKVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455566789999999999999988874
No 453
>PLN02199 shikimate kinase
Probab=93.89 E-value=0.024 Score=49.56 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=25.1
Q ss_pred CCceeEEEcCCCCCCCcccc---cccCCceeecc
Q psy7782 31 PPKGVILYGPPGTGKTLPFS---PALGYHYYCRG 61 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~---~~~~~~~~~~~ 61 (225)
..+.|+|.|++|||||++++ ...|.+|++..
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 45789999999999999997 34678888543
No 454
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.89 E-value=0.026 Score=51.87 Aligned_cols=20 Identities=35% Similarity=0.708 Sum_probs=17.2
Q ss_pred CCceeEEEcCCCCCCCcccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~ 50 (225)
.|.-+++.||||+|||++|.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaa 117 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCG 117 (428)
T ss_pred CCEEEEEECCCCCcHHHHHH
Confidence 36778999999999999874
No 455
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.89 E-value=0.027 Score=51.70 Aligned_cols=20 Identities=25% Similarity=0.454 Sum_probs=17.0
Q ss_pred CCceeEEEcCCCCCCCcccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~ 50 (225)
++.-++|.||+|+||||++.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaa 118 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCT 118 (429)
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35678899999999999875
No 456
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=93.88 E-value=0.015 Score=47.34 Aligned_cols=16 Identities=38% Similarity=0.592 Sum_probs=14.3
Q ss_pred eEEEcCCCCCCCcccc
Q psy7782 35 VILYGPPGTGKTLPFS 50 (225)
Q Consensus 35 iLl~GppGtGKT~la~ 50 (225)
|-+.||||+||||+|+
T Consensus 2 IgI~G~sgSGKTTla~ 17 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAK 17 (194)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 4588999999999996
No 457
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=93.87 E-value=0.015 Score=52.74 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=16.8
Q ss_pred ceeEEEcCCCCCCCccccccc
Q psy7782 33 KGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~ 53 (225)
--.|++||||||||+|++.++
T Consensus 170 QR~lIvgppGvGKTTLaK~Ia 190 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIA 190 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHH
Confidence 346889999999999997433
No 458
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=93.86 E-value=0.037 Score=43.47 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=17.6
Q ss_pred CCceeEEEcCCCCCCCcccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~ 50 (225)
..+.+||.+|+|+|||.++.
T Consensus 24 ~~~~~ll~~~tGsGKT~~~~ 43 (184)
T PF04851_consen 24 EERRVLLNAPTGSGKTIIAL 43 (184)
T ss_dssp GCSEEEEEESTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCcChhhh
Confidence 45789999999999999875
No 459
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.86 E-value=0.017 Score=47.83 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=22.0
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||||.+.++|.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 28 IKKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344455789999999999999988874
No 460
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.85 E-value=0.016 Score=48.82 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=22.0
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||+|++.++|.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 26 IPDNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 344556789999999999999988874
No 461
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=93.84 E-value=0.016 Score=49.01 Aligned_cols=27 Identities=22% Similarity=0.342 Sum_probs=22.5
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||||++.++|.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (253)
T TIGR02323 26 LYPGEVLGIVGESGSGKSTLLGCLAGR 52 (253)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 455567789999999999999988774
No 462
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.81 E-value=0.024 Score=47.94 Aligned_cols=20 Identities=30% Similarity=0.466 Sum_probs=17.0
Q ss_pred CCceeEEEcCCCCCCCcccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~ 50 (225)
-+-..|+.||||||||++.+
T Consensus 136 g~lntLiigpP~~GKTTlLR 155 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLR 155 (308)
T ss_pred CceeeEEecCCCCChHHHHH
Confidence 35578999999999999875
No 463
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=93.81 E-value=0.016 Score=45.43 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=21.2
Q ss_pred ceeEEEcCCCCCCCcccccccCCcee
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHYY 58 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~~ 58 (225)
--|++.|+||+|||+|+.+..+..|-
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~ 29 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFN 29 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCC
Confidence 36889999999999999877665543
No 464
>KOG0064|consensus
Probab=93.80 E-value=0.02 Score=53.58 Aligned_cols=30 Identities=30% Similarity=0.515 Sum_probs=24.2
Q ss_pred CCCCCceeEEEcCCCCCCCcccccccC-Cce
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFSPALG-YHY 57 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~~~~~-~~~ 57 (225)
.+.+...+|+.||.||||+++.+-..| +|+
T Consensus 504 ~i~~G~hLLItGPNGCGKSSLfRILggLWPv 534 (728)
T KOG0064|consen 504 QIEPGMHLLITGPNGCGKSSLFRILGGLWPV 534 (728)
T ss_pred EecCCceEEEECCCCccHHHHHHHHhccCcc
Confidence 356778999999999999999986666 444
No 465
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.80 E-value=0.017 Score=47.31 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=21.2
Q ss_pred CCCceeEEEcCCCCCCCcccccccCC
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
.+..-+.|.||+|+|||||++.++|.
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 34445679999999999999988884
No 466
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=93.78 E-value=0.018 Score=47.93 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=22.7
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||+|++.++|.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLlk~l~G~ 56 (226)
T cd03234 30 VESGQVMAILGSSGSGKTTLLDAISGR 56 (226)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCc
Confidence 455567789999999999999988875
No 467
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.77 E-value=0.015 Score=47.52 Aligned_cols=19 Identities=26% Similarity=0.142 Sum_probs=15.6
Q ss_pred eEEEcCCCCCCCccccccc
Q psy7782 35 VILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~~ 53 (225)
|.+.|+||||||++|+..+
T Consensus 2 i~i~G~sgsGKTtla~~l~ 20 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQ 20 (187)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4678999999999997443
No 468
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.76 E-value=0.018 Score=48.15 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=22.1
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||||++.++|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 445556789999999999999988874
No 469
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.76 E-value=0.015 Score=48.34 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=22.6
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCCc
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~~ 56 (225)
+.+..-+.|.||+|+|||||++.++|..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 23 IPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3445557799999999999999888853
No 470
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.75 E-value=0.016 Score=47.60 Aligned_cols=27 Identities=37% Similarity=0.539 Sum_probs=22.4
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||||++.++|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 445566789999999999999988884
No 471
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.75 E-value=0.015 Score=47.64 Aligned_cols=22 Identities=32% Similarity=0.295 Sum_probs=19.1
Q ss_pred eeEEEcCCCCCCCcccccccCC
Q psy7782 34 GVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~~ 55 (225)
-+.|.||+|+|||+|++.++|.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 4569999999999999988874
No 472
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.74 E-value=0.016 Score=48.05 Aligned_cols=25 Identities=32% Similarity=0.612 Sum_probs=20.8
Q ss_pred CCceeEEEcCCCCCCCcccccccCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+..-+.|.||+|+|||||.+.++|.
T Consensus 28 ~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 28 PGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3344789999999999999988874
No 473
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.73 E-value=0.018 Score=47.90 Aligned_cols=27 Identities=41% Similarity=0.568 Sum_probs=22.0
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||||++.++|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 344555779999999999999988874
No 474
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.72 E-value=0.019 Score=50.35 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=21.9
Q ss_pred CCCCCceeEEEcCCCCCCCcccccccC
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
-+.....+++.||+|+|||+++++.++
T Consensus 140 ~v~~~~~ili~G~tGsGKTTll~al~~ 166 (308)
T TIGR02788 140 AIASRKNIIISGGTGSGKTTFLKSLVD 166 (308)
T ss_pred HhhCCCEEEEECCCCCCHHHHHHHHHc
Confidence 355678999999999999999875544
No 475
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.71 E-value=0.018 Score=46.82 Aligned_cols=27 Identities=22% Similarity=0.301 Sum_probs=22.7
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||+|++.++|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 455667789999999999999988884
No 476
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.71 E-value=0.016 Score=47.79 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=22.6
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||+|++.++|.
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 455566789999999999999988884
No 477
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.70 E-value=0.019 Score=46.76 Aligned_cols=28 Identities=29% Similarity=0.509 Sum_probs=23.2
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCCc
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~~ 56 (225)
+.+..-+.|.||+|+|||+|.+.++|..
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455677899999999999999888853
No 478
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.68 E-value=0.017 Score=47.55 Aligned_cols=27 Identities=37% Similarity=0.555 Sum_probs=22.0
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||||++.++|.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 28 VKPGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 344455789999999999999988884
No 479
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=93.67 E-value=0.018 Score=44.62 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=19.3
Q ss_pred eeEEEcCCCCCCCcccccccCCce
Q psy7782 34 GVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~~~~ 57 (225)
-+++.|+||+|||+|+.+..+..+
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~ 25 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKF 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 378999999999999986655443
No 480
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.67 E-value=0.018 Score=47.01 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=22.3
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.+.||+|+|||+|++.++|.
T Consensus 28 i~~G~~~~i~G~nG~GKSTLl~~i~G~ 54 (204)
T cd03250 28 VPKGELVAIVGPVGSGKSSLLSALLGE 54 (204)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCc
Confidence 445566789999999999999988774
No 481
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.65 E-value=0.016 Score=48.00 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=22.0
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||||++.++|.
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 344455779999999999999988885
No 482
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.65 E-value=0.018 Score=48.28 Aligned_cols=27 Identities=37% Similarity=0.508 Sum_probs=22.1
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||||++.++|.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 25 IPSGELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344555779999999999999988884
No 483
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=93.65 E-value=0.018 Score=45.67 Aligned_cols=27 Identities=41% Similarity=0.742 Sum_probs=22.3
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.+.||+|+|||+|++.++|.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 445566789999999999999988774
No 484
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=93.64 E-value=0.018 Score=48.34 Aligned_cols=27 Identities=37% Similarity=0.549 Sum_probs=22.6
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||+|++.++|.
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 455666789999999999999988884
No 485
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=93.62 E-value=0.032 Score=48.87 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=19.3
Q ss_pred CCCceeEEEcCCCCCCCccccccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~ 53 (225)
..|--+++.||+|||||++|...+
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La 113 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELA 113 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999997433
No 486
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=93.62 E-value=0.019 Score=47.93 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=22.1
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||||++.++|.
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 32 IGEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 344455779999999999999988885
No 487
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.61 E-value=0.018 Score=48.02 Aligned_cols=27 Identities=30% Similarity=0.468 Sum_probs=21.9
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||||++.++|.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 344445789999999999999988875
No 488
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=93.61 E-value=0.016 Score=54.76 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=24.4
Q ss_pred ceeEEEcCCCCCCCcccc---cccCCceeecc
Q psy7782 33 KGVILYGPPGTGKTLPFS---PALGYHYYCRG 61 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~---~~~~~~~~~~~ 61 (225)
.-|.|.|+||||||++++ ...|++|++..
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D 38 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADAD 38 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 468899999999999987 56789999664
No 489
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.61 E-value=0.02 Score=47.30 Aligned_cols=26 Identities=27% Similarity=0.207 Sum_probs=21.5
Q ss_pred CCCceeEEEcCCCCCCCcccccccCC
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
.+..-+.|.||+|+|||+|++.++|.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44445779999999999999988884
No 490
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=93.59 E-value=0.024 Score=47.16 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=22.3
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||+|++.++|.
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345566789999999999999988874
No 491
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=93.59 E-value=0.021 Score=48.82 Aligned_cols=27 Identities=22% Similarity=0.114 Sum_probs=22.2
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||+|++.++|.
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 34 FPAGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 345556679999999999999988884
No 492
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=93.59 E-value=0.018 Score=49.01 Aligned_cols=27 Identities=26% Similarity=0.568 Sum_probs=22.0
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||||++.++|.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 444556789999999999999988774
No 493
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=93.57 E-value=0.021 Score=47.65 Aligned_cols=29 Identities=24% Similarity=0.563 Sum_probs=23.5
Q ss_pred cCCCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 27 MGIKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 27 ~g~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+.+..-+.|.||+|+|||||++.++|.
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 20 LTVERGERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33456667789999999999999988774
No 494
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.57 E-value=0.019 Score=46.57 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=23.0
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCCc
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~~ 56 (225)
+.+..-+.|.||+|+|||+|++.++|..
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455567899999999999999988853
No 495
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=93.57 E-value=0.019 Score=48.39 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=21.8
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||||++.++|.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 26 VKPGEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 344445779999999999999988884
No 496
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=93.57 E-value=0.018 Score=48.14 Aligned_cols=27 Identities=37% Similarity=0.568 Sum_probs=22.6
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||||++.++|.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455566779999999999999988874
No 497
>PRK09862 putative ATP-dependent protease; Provisional
Probab=93.56 E-value=0.025 Score=52.99 Aligned_cols=23 Identities=48% Similarity=0.765 Sum_probs=19.5
Q ss_pred CceeEEEcCCCCCCCcccccccC
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~ 54 (225)
...++|+||||||||++++.+.+
T Consensus 210 G~~llliG~~GsGKTtLak~L~g 232 (506)
T PRK09862 210 GHNLLLIGPPGTGKTMLASRING 232 (506)
T ss_pred CcEEEEECCCCCcHHHHHHHHhc
Confidence 45699999999999999986655
No 498
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=93.56 E-value=0.026 Score=46.08 Aligned_cols=27 Identities=26% Similarity=0.175 Sum_probs=20.4
Q ss_pred ceeEEEcCCCCCCCcccc--cccCCceee
Q psy7782 33 KGVILYGPPGTGKTLPFS--PALGYHYYC 59 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~--~~~~~~~~~ 59 (225)
.-|.|.|++|||||++++ +..|.++++
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~~g~~~i~ 31 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAELGAPVID 31 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHHcCCEEEE
Confidence 358899999999999997 335655543
No 499
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.55 E-value=0.018 Score=46.95 Aligned_cols=27 Identities=26% Similarity=0.289 Sum_probs=22.3
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||+|++.++|.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 345566789999999999999988774
No 500
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=93.55 E-value=0.022 Score=43.90 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=19.8
Q ss_pred eeEEEcCCCCCCCcccccccCCcee
Q psy7782 34 GVILYGPPGTGKTLPFSPALGYHYY 58 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~~~~~ 58 (225)
-+.+.|+||+|||+++.+..+..+.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~ 26 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFV 26 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCc
Confidence 3789999999999999866654443
Done!