Query psy7782
Match_columns 225
No_of_seqs 268 out of 2168
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 18:44:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7782.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7782hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wg5_A General control protein 100.0 2.2E-28 7.5E-33 181.6 10.4 93 133-225 11-103 (109)
2 4b4t_I 26S protease regulatory 100.0 1.5E-28 5.1E-33 220.9 10.0 152 73-225 18-169 (437)
3 3h43_A Proteasome-activating n 99.9 8.5E-25 2.9E-29 155.0 9.9 76 143-218 2-77 (85)
4 4b4t_J 26S protease regulatory 99.9 4.7E-24 1.6E-28 190.8 4.8 90 2-91 152-258 (405)
5 4b4t_I 26S protease regulatory 99.9 2.5E-23 8.5E-28 187.0 6.0 90 2-91 186-292 (437)
6 4b4t_L 26S protease subunit RP 99.9 6E-23 2.1E-27 185.8 5.6 91 1-91 184-291 (437)
7 4b4t_M 26S protease regulatory 99.9 4.4E-23 1.5E-27 186.5 3.9 91 1-91 184-291 (434)
8 4b4t_K 26S protease regulatory 99.9 4.4E-23 1.5E-27 186.3 1.4 91 1-91 175-282 (428)
9 4b4t_H 26S protease regulatory 99.9 1.1E-22 3.8E-27 184.3 2.5 91 1-91 212-319 (467)
10 3m9b_A Proteasome-associated A 99.8 7E-21 2.4E-25 157.8 11.1 95 124-220 63-157 (251)
11 3cf2_A TER ATPase, transitiona 99.8 1.5E-20 5.3E-25 180.8 -0.6 91 1-91 480-587 (806)
12 4b4t_K 26S protease regulatory 99.8 1.2E-17 3.9E-22 150.9 15.0 115 109-225 45-159 (428)
13 4b4t_J 26S protease regulatory 99.7 8E-18 2.7E-22 150.5 12.6 120 106-225 12-135 (405)
14 3cf2_A TER ATPase, transitiona 99.7 2.8E-19 9.7E-24 172.0 2.4 90 2-91 208-314 (806)
15 4b4t_L 26S protease subunit RP 99.6 6.7E-16 2.3E-20 139.7 11.9 99 127-225 70-168 (437)
16 4b4t_M 26S protease regulatory 99.6 7.3E-15 2.5E-19 132.8 10.5 99 127-225 44-168 (434)
17 3cf0_A Transitional endoplasmi 99.5 7.9E-15 2.7E-19 126.3 2.7 83 1-83 18-112 (301)
18 2ce7_A Cell division protein F 99.5 2.7E-14 9.4E-19 130.5 4.5 90 1-91 19-125 (476)
19 1xwi_A SKD1 protein; VPS4B, AA 99.5 9E-15 3.1E-19 127.4 1.1 82 1-83 15-109 (322)
20 2x8a_A Nuclear valosin-contain 99.5 1E-14 3.5E-19 124.3 1.4 83 1-83 13-107 (274)
21 4b4t_H 26S protease regulatory 99.4 4.4E-13 1.5E-17 121.5 6.7 69 157-225 94-196 (467)
22 3eie_A Vacuolar protein sortin 99.4 3.5E-14 1.2E-18 123.3 -1.5 82 1-83 21-114 (322)
23 2wfw_A ARC; ATP-binding protei 99.3 1.4E-12 4.8E-17 100.3 6.9 66 153-220 1-66 (153)
24 3h4m_A Proteasome-activating n 99.3 1.5E-13 5E-18 116.5 1.4 86 1-86 20-119 (285)
25 2zan_A Vacuolar protein sortin 99.3 3.1E-13 1.1E-17 122.5 1.4 82 1-83 137-231 (444)
26 2qp9_X Vacuolar protein sortin 99.3 1E-13 3.4E-18 122.2 -1.9 82 1-83 54-147 (355)
27 2qz4_A Paraplegin; AAA+, SPG7, 99.3 2.9E-13 9.8E-18 113.0 0.8 82 1-83 9-102 (262)
28 2r62_A Cell division protease 99.3 4.7E-13 1.6E-17 112.5 1.6 85 1-86 14-112 (268)
29 3hu3_A Transitional endoplasmi 99.3 3.8E-13 1.3E-17 123.4 0.6 83 1-83 207-301 (489)
30 1lv7_A FTSH; alpha/beta domain 99.3 4.9E-13 1.7E-17 111.9 0.4 82 1-83 15-108 (257)
31 2dhr_A FTSH; AAA+ protein, hex 99.2 1.7E-12 5.9E-17 119.3 1.6 89 1-90 34-139 (499)
32 3b9p_A CG5977-PA, isoform A; A 99.2 1.5E-12 5E-17 111.0 0.4 82 1-83 24-117 (297)
33 3vfd_A Spastin; ATPase, microt 99.2 3.6E-12 1.2E-16 113.2 0.1 82 1-83 118-211 (389)
34 3d8b_A Fidgetin-like protein 1 99.1 2.7E-12 9.2E-17 113.1 -0.9 82 1-83 87-180 (357)
35 1ypw_A Transitional endoplasmi 99.1 2.3E-12 8E-17 124.7 -2.6 83 1-83 480-574 (806)
36 1ypw_A Transitional endoplasmi 99.0 8.9E-12 3E-16 120.6 -2.4 83 1-83 207-301 (806)
37 1ixz_A ATP-dependent metallopr 99.0 3.8E-11 1.3E-15 100.1 1.0 82 1-83 19-112 (254)
38 2c9o_A RUVB-like 1; hexameric 99.0 2.9E-11 1E-15 109.8 -0.3 83 1-91 40-143 (456)
39 1iy2_A ATP-dependent metallopr 98.9 1.6E-10 5.6E-15 97.8 1.0 82 1-83 43-136 (278)
40 3t15_A Ribulose bisphosphate c 98.9 9.8E-11 3.4E-15 100.4 -1.0 57 27-83 31-103 (293)
41 1g41_A Heat shock protein HSLU 98.6 6.4E-09 2.2E-13 94.1 0.8 80 1-80 18-112 (444)
42 3syl_A Protein CBBX; photosynt 98.6 1.3E-08 4.4E-13 86.7 1.3 79 1-83 34-134 (309)
43 3hws_A ATP-dependent CLP prote 98.5 3.9E-09 1.3E-13 92.7 -3.6 87 1-87 18-126 (363)
44 3cmw_A Protein RECA, recombina 98.4 1.4E-08 4.6E-13 104.3 -1.6 82 2-83 1024-1164(1706)
45 1d2n_A N-ethylmaleimide-sensit 98.4 2.4E-08 8.4E-13 83.9 -0.7 62 25-86 57-133 (272)
46 1sxj_A Activator 1 95 kDa subu 98.3 1.1E-07 3.6E-12 87.6 1.5 64 1-64 42-112 (516)
47 1ofh_A ATP-dependent HSL prote 98.3 7.8E-08 2.7E-12 81.4 -0.4 64 1-64 18-85 (310)
48 1um8_A ATP-dependent CLP prote 98.2 3.6E-07 1.2E-11 80.3 2.4 63 1-64 24-107 (376)
49 1hqc_A RUVB; extended AAA-ATPa 98.2 6.8E-07 2.3E-11 76.3 3.8 75 1-83 15-94 (324)
50 3pxi_A Negative regulator of g 98.2 7.8E-07 2.7E-11 85.3 3.4 70 1-83 183-271 (758)
51 3pxg_A Negative regulator of g 98.1 8.9E-07 3E-11 80.5 3.4 70 1-83 183-271 (468)
52 3m6a_A ATP-dependent protease 98.1 3.4E-07 1.2E-11 84.8 0.4 80 1-87 84-185 (543)
53 3pvs_A Replication-associated 98.1 4.7E-07 1.6E-11 82.0 0.8 56 33-88 51-117 (447)
54 3co5_A Putative two-component 98.1 7E-07 2.4E-11 68.1 1.4 65 1-76 7-75 (143)
55 3pfi_A Holliday junction ATP-d 98.1 1.5E-06 5E-11 75.0 3.1 56 1-64 32-90 (338)
56 3n70_A Transport activator; si 98.1 1.7E-06 5.9E-11 65.9 3.1 71 2-87 5-86 (145)
57 3uk6_A RUVB-like 2; hexameric 98.0 1.1E-06 3.8E-11 76.4 1.7 56 1-64 47-107 (368)
58 1jbk_A CLPB protein; beta barr 97.9 3E-06 1E-10 65.8 1.8 20 31-50 42-61 (195)
59 3u61_B DNA polymerase accessor 97.9 4.2E-06 1.4E-10 71.7 2.5 62 1-74 29-95 (324)
60 3pxi_A Negative regulator of g 97.9 7.7E-06 2.6E-10 78.4 4.1 79 1-87 494-589 (758)
61 3ec2_A DNA replication protein 97.8 2.2E-06 7.5E-11 67.3 -0.1 27 27-53 33-59 (180)
62 2r44_A Uncharacterized protein 97.8 4.5E-06 1.6E-10 71.8 1.4 31 33-63 47-80 (331)
63 2p65_A Hypothetical protein PF 97.8 4.4E-06 1.5E-10 64.8 0.9 20 31-50 42-61 (187)
64 2chg_A Replication factor C sm 97.7 8.3E-06 2.8E-10 64.7 1.9 51 1-64 20-78 (226)
65 4fcw_A Chaperone protein CLPB; 97.7 9.5E-06 3.2E-10 68.7 2.2 49 1-53 20-68 (311)
66 1tue_A Replication protein E1; 97.7 3.6E-06 1.2E-10 68.6 -0.7 27 28-54 54-80 (212)
67 1g8p_A Magnesium-chelatase 38 97.7 8.2E-06 2.8E-10 70.2 1.5 19 33-51 46-64 (350)
68 2qby_B CDC6 homolog 3, cell di 97.7 1.3E-05 4.3E-10 69.8 2.1 42 1-51 23-64 (384)
69 3bos_A Putative DNA replicatio 97.6 2.2E-05 7.7E-10 63.3 3.0 34 31-64 51-90 (242)
70 1qvr_A CLPB protein; coiled co 97.6 1.1E-05 3.9E-10 78.3 1.1 53 31-83 190-267 (854)
71 1njg_A DNA polymerase III subu 97.6 1.8E-05 6.1E-10 63.4 2.0 39 1-51 26-64 (250)
72 1r6b_X CLPA protein; AAA+, N-t 97.6 1.4E-05 4.9E-10 76.4 1.7 53 31-83 206-282 (758)
73 2bjv_A PSP operon transcriptio 97.6 1.8E-05 6E-10 65.9 2.0 34 31-64 28-67 (265)
74 1in4_A RUVB, holliday junction 97.6 1.2E-05 4.1E-10 69.7 0.9 24 31-54 50-73 (334)
75 1u0j_A DNA replication protein 97.6 1E-05 3.4E-10 68.5 0.1 25 30-54 102-126 (267)
76 2v1u_A Cell division control p 97.6 1.8E-05 6E-10 68.6 1.6 55 1-64 22-88 (387)
77 1r6b_X CLPA protein; AAA+, N-t 97.6 2.6E-05 8.8E-10 74.6 2.9 56 1-64 461-523 (758)
78 1iqp_A RFCS; clamp loader, ext 97.6 2.1E-05 7.2E-10 66.7 1.9 51 1-64 28-86 (327)
79 3nbx_X ATPase RAVA; AAA+ ATPas 97.5 2.4E-05 8.1E-10 71.8 1.9 22 32-53 41-62 (500)
80 1sxj_D Activator 1 41 kDa subu 97.5 8.8E-06 3E-10 70.0 -1.0 32 33-64 59-99 (353)
81 1sxj_C Activator 1 40 kDa subu 97.5 2.3E-05 7.7E-10 67.8 1.5 51 1-64 28-86 (340)
82 1qvr_A CLPB protein; coiled co 97.5 3.4E-05 1.1E-09 75.0 2.8 56 1-64 561-626 (854)
83 1ojl_A Transcriptional regulat 97.5 4.2E-05 1.4E-09 65.5 2.5 53 1-64 5-63 (304)
84 3te6_A Regulatory protein SIR3 97.5 1.8E-05 6E-10 68.6 -0.0 21 30-50 43-63 (318)
85 2w58_A DNAI, primosome compone 97.4 1.7E-05 5.8E-10 63.1 -0.4 20 32-51 54-73 (202)
86 1l8q_A Chromosomal replication 97.4 2.5E-05 8.4E-10 67.0 0.3 34 31-64 36-75 (324)
87 1jr3_A DNA polymerase III subu 97.4 4.9E-05 1.7E-09 65.8 2.1 38 1-50 19-56 (373)
88 2chq_A Replication factor C sm 97.4 3E-05 1E-09 65.5 0.5 51 1-64 20-78 (319)
89 3f9v_A Minichromosome maintena 97.3 2.5E-05 8.5E-10 73.1 -0.8 23 32-54 327-349 (595)
90 1sxj_B Activator 1 37 kDa subu 97.3 6.4E-05 2.2E-09 63.5 1.6 51 1-64 24-82 (323)
91 2qby_A CDC6 homolog 1, cell di 97.3 6E-05 2.1E-09 65.1 1.4 52 1-61 23-83 (386)
92 1fnn_A CDC6P, cell division co 97.3 8.1E-05 2.8E-09 64.6 2.1 55 1-64 20-83 (389)
93 1sxj_E Activator 1 40 kDa subu 97.3 4.4E-05 1.5E-09 65.9 0.1 20 35-54 39-58 (354)
94 1svm_A Large T antigen; AAA+ f 97.2 4.1E-05 1.4E-09 67.8 -0.1 28 27-54 164-191 (377)
95 2qgz_A Helicase loader, putati 97.2 6.1E-05 2.1E-09 64.7 0.8 19 32-50 152-170 (308)
96 3cmu_A Protein RECA, recombina 97.2 0.0001 3.4E-09 77.0 1.6 69 19-87 1411-1515(2050)
97 1a5t_A Delta prime, HOLB; zinc 97.0 0.00025 8.6E-09 61.3 2.3 21 30-50 22-42 (334)
98 3vaa_A Shikimate kinase, SK; s 97.0 0.00013 4.5E-09 58.1 0.4 32 29-60 22-56 (199)
99 2z4s_A Chromosomal replication 97.0 8E-05 2.7E-09 67.1 -1.2 33 32-64 130-170 (440)
100 2kjq_A DNAA-related protein; s 96.9 0.00014 4.7E-09 55.8 0.2 24 31-54 35-58 (149)
101 3trf_A Shikimate kinase, SK; a 96.8 0.0002 7E-09 55.9 0.2 29 32-60 5-36 (185)
102 3iij_A Coilin-interacting nucl 96.8 0.00026 8.8E-09 55.2 0.5 30 31-60 10-42 (180)
103 2gno_A DNA polymerase III, gam 96.7 0.00022 7.7E-09 61.2 -0.0 63 2-77 1-76 (305)
104 2rhm_A Putative kinase; P-loop 96.7 0.00027 9.3E-09 55.3 0.4 31 29-59 2-35 (193)
105 3k1j_A LON protease, ATP-depen 96.7 0.00038 1.3E-08 65.0 1.2 22 33-54 61-82 (604)
106 2ga8_A Hypothetical 39.9 kDa p 96.7 0.00022 7.5E-09 62.6 -0.6 65 2-75 3-72 (359)
107 1gvn_B Zeta; postsegregational 96.7 0.00083 2.8E-08 57.0 2.9 23 30-52 31-53 (287)
108 1zp6_A Hypothetical protein AT 96.6 0.00027 9.4E-09 55.3 -0.2 27 29-55 6-32 (191)
109 1qhx_A CPT, protein (chloramph 96.6 0.00041 1.4E-08 53.7 0.8 28 32-59 3-33 (178)
110 1y63_A LMAJ004144AAA protein; 96.6 0.00038 1.3E-08 54.7 0.3 29 32-60 10-42 (184)
111 2wfw_A ARC; ATP-binding protei 96.5 0.0028 9.4E-08 48.6 4.5 58 161-218 69-145 (153)
112 2vhj_A Ntpase P4, P4; non- hyd 96.5 0.0003 1E-08 61.0 -1.1 25 28-52 119-143 (331)
113 1kag_A SKI, shikimate kinase I 96.4 0.0007 2.4E-08 52.1 0.8 27 33-59 5-34 (173)
114 3kb2_A SPBC2 prophage-derived 96.4 0.00054 1.8E-08 52.4 -0.1 28 34-61 3-33 (173)
115 3cm0_A Adenylate kinase; ATP-b 96.3 0.00055 1.9E-08 53.3 -0.2 28 33-60 5-35 (186)
116 3lw7_A Adenylate kinase relate 96.3 0.00064 2.2E-08 51.8 0.1 27 34-60 3-31 (179)
117 3umf_A Adenylate kinase; rossm 96.3 0.00079 2.7E-08 55.0 0.4 23 29-51 26-48 (217)
118 4akg_A Glutathione S-transfera 96.3 0.0011 3.7E-08 71.3 1.5 35 31-65 1266-1304(2695)
119 1ly1_A Polynucleotide kinase; 96.2 0.00082 2.8E-08 51.8 0.3 20 33-52 3-22 (181)
120 1via_A Shikimate kinase; struc 96.2 0.00071 2.4E-08 52.4 -0.0 27 34-60 6-35 (175)
121 2iyv_A Shikimate kinase, SK; t 96.2 0.00074 2.5E-08 52.6 0.0 27 34-60 4-33 (184)
122 2bbw_A Adenylate kinase 4, AK4 96.2 0.00097 3.3E-08 54.7 0.4 27 32-58 27-56 (246)
123 2cdn_A Adenylate kinase; phosp 96.2 0.001 3.5E-08 52.7 0.5 29 32-60 20-51 (201)
124 2cvh_A DNA repair and recombin 96.2 0.00064 2.2E-08 54.2 -0.8 26 28-53 16-41 (220)
125 1qf9_A UMP/CMP kinase, protein 96.1 0.001 3.5E-08 51.7 0.4 30 31-60 5-37 (194)
126 2vli_A Antibiotic resistance p 96.1 0.0015 5.1E-08 50.6 1.2 27 32-58 5-34 (183)
127 1zd8_A GTP:AMP phosphotransfer 96.1 0.0011 3.6E-08 53.8 0.3 30 31-60 6-38 (227)
128 3sr0_A Adenylate kinase; phosp 96.1 0.0009 3.1E-08 54.1 -0.1 17 35-51 3-19 (206)
129 3dl0_A Adenylate kinase; phosp 96.1 0.001 3.5E-08 53.2 0.2 26 35-60 3-31 (216)
130 1tev_A UMP-CMP kinase; ploop, 96.1 0.00098 3.4E-08 51.9 0.0 28 32-59 3-33 (196)
131 1aky_A Adenylate kinase; ATP:A 96.1 0.0012 4E-08 53.2 0.4 29 32-60 4-35 (220)
132 2w0m_A SSO2452; RECA, SSPF, un 96.0 0.00059 2E-08 54.6 -1.5 26 28-53 19-44 (235)
133 1e6c_A Shikimate kinase; phosp 96.0 0.0011 3.6E-08 51.0 -0.1 28 33-60 3-33 (173)
134 1zuh_A Shikimate kinase; alpha 96.0 0.0011 3.9E-08 50.8 -0.0 28 33-60 8-38 (168)
135 3m9b_A Proteasome-associated A 96.0 0.02 6.9E-07 47.4 7.5 57 162-218 161-235 (251)
136 3fb4_A Adenylate kinase; psych 96.0 0.0011 3.8E-08 53.0 -0.2 26 35-60 3-31 (216)
137 1n0w_A DNA repair protein RAD5 96.0 0.00068 2.3E-08 54.9 -1.5 26 28-53 20-45 (243)
138 2ze6_A Isopentenyl transferase 95.9 0.0015 5.1E-08 54.2 0.3 27 34-60 3-32 (253)
139 2p5t_B PEZT; postsegregational 95.9 0.0026 8.7E-08 52.6 1.7 22 30-51 30-51 (253)
140 2c95_A Adenylate kinase 1; tra 95.9 0.0014 5E-08 51.2 0.2 29 31-59 8-39 (196)
141 1w5s_A Origin recognition comp 95.9 0.002 6.7E-08 56.2 1.0 20 31-50 49-70 (412)
142 1ye8_A Protein THEP1, hypothet 95.9 0.00082 2.8E-08 53.0 -1.3 21 34-54 2-22 (178)
143 3tlx_A Adenylate kinase 2; str 95.8 0.0016 5.5E-08 53.6 0.3 31 30-60 27-60 (243)
144 2j41_A Guanylate kinase; GMP, 95.8 0.0012 4E-08 52.2 -0.7 25 30-54 4-28 (207)
145 1kht_A Adenylate kinase; phosp 95.8 0.0016 5.4E-08 50.6 0.1 18 33-50 4-21 (192)
146 1zak_A Adenylate kinase; ATP:A 95.8 0.0014 4.9E-08 52.8 -0.2 29 31-59 4-35 (222)
147 1ak2_A Adenylate kinase isoenz 95.8 0.0019 6.4E-08 52.6 0.5 29 32-60 16-47 (233)
148 2bwj_A Adenylate kinase 5; pho 95.8 0.0013 4.6E-08 51.5 -0.4 28 32-59 12-42 (199)
149 3t61_A Gluconokinase; PSI-biol 95.8 0.0021 7E-08 50.9 0.7 29 32-60 18-49 (202)
150 1jjv_A Dephospho-COA kinase; P 95.8 0.002 6.9E-08 51.1 0.6 25 34-58 4-30 (206)
151 2pt5_A Shikimate kinase, SK; a 95.8 0.0017 5.7E-08 49.7 0.0 26 34-59 2-30 (168)
152 3be4_A Adenylate kinase; malar 95.8 0.0014 4.8E-08 52.8 -0.4 28 33-60 6-36 (217)
153 4a74_A DNA repair and recombin 95.7 0.00077 2.6E-08 54.0 -2.0 27 28-54 21-47 (231)
154 4gp7_A Metallophosphoesterase; 95.7 0.0017 5.9E-08 50.4 0.1 22 31-52 8-29 (171)
155 1ukz_A Uridylate kinase; trans 95.7 0.0021 7.2E-08 50.8 0.6 29 32-60 15-46 (203)
156 1nks_A Adenylate kinase; therm 95.7 0.0016 5.5E-08 50.6 -0.2 17 34-50 3-19 (194)
157 4eun_A Thermoresistant glucoki 95.7 0.0013 4.6E-08 52.2 -0.8 28 31-58 28-58 (200)
158 4b3f_X DNA-binding protein smu 95.7 0.002 6.8E-08 60.5 0.3 16 34-49 207-222 (646)
159 1kgd_A CASK, peripheral plasma 95.6 0.0015 5.1E-08 51.1 -0.7 23 32-54 5-27 (180)
160 3uie_A Adenylyl-sulfate kinase 95.6 0.0014 4.8E-08 52.1 -0.9 25 30-54 23-47 (200)
161 2ehv_A Hypothetical protein PH 95.6 0.0015 5.1E-08 53.0 -0.9 26 28-53 26-51 (251)
162 2zts_A Putative uncharacterize 95.6 0.0022 7.4E-08 51.9 0.1 23 28-50 26-48 (251)
163 1e4v_A Adenylate kinase; trans 95.6 0.0018 6.3E-08 51.8 -0.4 27 34-60 2-31 (214)
164 2bdt_A BH3686; alpha-beta prot 95.5 0.0013 4.4E-08 51.5 -1.4 21 34-54 4-24 (189)
165 2dr3_A UPF0273 protein PH0284; 95.5 0.0021 7.2E-08 52.0 -0.1 23 28-50 19-41 (247)
166 2qen_A Walker-type ATPase; unk 95.5 0.0054 1.9E-07 51.9 2.4 18 33-50 32-49 (350)
167 1knq_A Gluconate kinase; ALFA/ 95.5 0.0016 5.5E-08 50.2 -0.9 28 32-59 8-38 (175)
168 2qor_A Guanylate kinase; phosp 95.5 0.0032 1.1E-07 50.1 0.8 23 29-51 9-31 (204)
169 2xb4_A Adenylate kinase; ATP-b 95.4 0.0024 8.3E-08 51.7 -0.1 26 35-60 3-31 (223)
170 3b9q_A Chloroplast SRP recepto 95.4 0.0023 7.7E-08 54.8 -0.4 25 30-54 98-122 (302)
171 3tr0_A Guanylate kinase, GMP k 95.3 0.0022 7.5E-08 50.5 -0.6 23 32-54 7-29 (205)
172 3c8u_A Fructokinase; YP_612366 95.3 0.0043 1.5E-07 49.5 1.1 24 31-54 21-44 (208)
173 1nlf_A Regulatory protein REPA 95.3 0.0015 5.2E-08 54.6 -1.7 24 28-51 26-49 (279)
174 2if2_A Dephospho-COA kinase; a 95.3 0.003 1E-07 49.9 -0.0 26 34-59 3-30 (204)
175 1cr0_A DNA primase/helicase; R 95.2 0.0022 7.7E-08 53.9 -1.0 25 27-51 30-54 (296)
176 2plr_A DTMP kinase, probable t 95.2 0.0032 1.1E-07 49.7 0.0 18 33-50 5-22 (213)
177 1cke_A CK, MSSA, protein (cyti 95.2 0.0032 1.1E-07 50.5 -0.1 26 33-58 6-34 (227)
178 3r20_A Cytidylate kinase; stru 95.2 0.0037 1.3E-07 51.6 0.3 27 32-58 9-38 (233)
179 3tau_A Guanylate kinase, GMP k 95.2 0.0026 8.9E-08 50.9 -0.6 22 31-52 7-28 (208)
180 1v5w_A DMC1, meiotic recombina 95.2 0.0051 1.7E-07 53.3 1.2 33 18-50 106-140 (343)
181 3hr8_A Protein RECA; alpha and 95.2 0.003 1E-07 55.4 -0.4 33 18-50 44-79 (356)
182 2zr9_A Protein RECA, recombina 95.1 0.0033 1.1E-07 54.8 -0.2 23 28-50 57-79 (349)
183 1lvg_A Guanylate kinase, GMP k 95.1 0.0022 7.6E-08 51.0 -1.2 24 31-54 3-26 (198)
184 2fna_A Conserved hypothetical 95.1 0.0059 2E-07 51.7 1.2 18 33-50 31-48 (357)
185 2r2a_A Uncharacterized protein 95.1 0.0042 1.4E-07 49.9 0.2 18 33-50 6-23 (199)
186 3lnc_A Guanylate kinase, GMP k 95.1 0.004 1.4E-07 50.4 0.1 24 31-54 26-50 (231)
187 2z43_A DNA repair and recombin 95.1 0.0058 2E-07 52.4 1.1 32 19-50 92-125 (324)
188 1z6g_A Guanylate kinase; struc 95.0 0.0027 9.3E-08 51.3 -1.0 26 29-54 20-45 (218)
189 1ex7_A Guanylate kinase; subst 95.0 0.0042 1.4E-07 49.5 0.1 18 33-50 2-19 (186)
190 2og2_A Putative signal recogni 95.0 0.0032 1.1E-07 55.2 -0.6 25 30-54 155-179 (359)
191 2eyu_A Twitching motility prot 95.0 0.0034 1.2E-07 52.5 -0.5 34 21-54 14-47 (261)
192 4e22_A Cytidylate kinase; P-lo 95.0 0.0039 1.3E-07 51.5 -0.1 26 33-58 28-56 (252)
193 1u94_A RECA protein, recombina 95.0 0.0066 2.3E-07 53.1 1.3 30 21-50 49-81 (356)
194 1uf9_A TT1252 protein; P-loop, 95.0 0.0054 1.9E-07 48.1 0.7 29 32-60 8-38 (203)
195 2v9p_A Replication protein E1; 95.0 0.0035 1.2E-07 53.8 -0.5 29 27-55 121-149 (305)
196 1vma_A Cell division protein F 94.9 0.0035 1.2E-07 53.8 -0.6 23 30-52 102-124 (306)
197 3a4m_A L-seryl-tRNA(SEC) kinas 94.9 0.0051 1.7E-07 51.0 0.3 27 32-58 4-36 (260)
198 2jaq_A Deoxyguanosine kinase; 94.9 0.0047 1.6E-07 48.4 0.1 16 35-50 3-18 (205)
199 2i1q_A DNA repair and recombin 94.9 0.0065 2.2E-07 51.9 0.9 32 19-50 83-116 (322)
200 2qmh_A HPR kinase/phosphorylas 94.9 0.0072 2.5E-07 48.8 1.1 19 32-50 34-52 (205)
201 3crm_A TRNA delta(2)-isopenten 94.8 0.0062 2.1E-07 52.6 0.7 29 32-60 5-36 (323)
202 3a00_A Guanylate kinase, GMP k 94.8 0.0031 1.1E-07 49.4 -1.2 22 33-54 2-23 (186)
203 2z0h_A DTMP kinase, thymidylat 94.8 0.0048 1.6E-07 48.1 -0.0 27 35-61 3-35 (197)
204 2v54_A DTMP kinase, thymidylat 94.8 0.0068 2.3E-07 47.6 0.8 30 32-61 4-37 (204)
205 1htw_A HI0065; nucleotide-bind 94.8 0.0038 1.3E-07 48.3 -0.7 28 28-55 29-56 (158)
206 3io5_A Recombination and repai 94.8 0.0049 1.7E-07 53.4 -0.0 22 28-50 25-46 (333)
207 3nwj_A ATSK2; P loop, shikimat 94.8 0.0038 1.3E-07 51.9 -0.7 29 32-60 48-79 (250)
208 1znw_A Guanylate kinase, GMP k 94.8 0.0037 1.3E-07 49.9 -0.9 26 29-54 17-42 (207)
209 1ltq_A Polynucleotide kinase; 94.8 0.0045 1.5E-07 52.0 -0.4 26 33-58 3-32 (301)
210 1pzn_A RAD51, DNA repair and r 94.7 0.0026 8.9E-08 55.4 -2.0 35 19-53 116-152 (349)
211 2pbr_A DTMP kinase, thymidylat 94.7 0.0054 1.8E-07 47.6 0.0 27 35-61 3-35 (195)
212 1nn5_A Similar to deoxythymidy 94.7 0.0063 2.2E-07 48.1 0.4 21 31-51 8-28 (215)
213 2wwf_A Thymidilate kinase, put 94.7 0.0059 2E-07 48.3 0.2 20 32-51 10-29 (212)
214 2qt1_A Nicotinamide riboside k 94.7 0.0048 1.6E-07 49.0 -0.3 23 32-54 21-43 (207)
215 1vht_A Dephospho-COA kinase; s 94.7 0.0076 2.6E-07 48.2 0.8 28 33-60 5-34 (218)
216 3lda_A DNA repair protein RAD5 94.6 0.0081 2.8E-07 53.4 0.9 31 20-50 164-196 (400)
217 1xp8_A RECA protein, recombina 94.6 0.0055 1.9E-07 53.8 -0.2 32 19-50 58-92 (366)
218 4akg_A Glutathione S-transfera 94.6 0.0049 1.7E-07 66.3 -0.6 48 31-78 644-697 (2695)
219 2grj_A Dephospho-COA kinase; T 94.6 0.0059 2E-07 48.7 -0.1 28 33-60 13-43 (192)
220 2yvu_A Probable adenylyl-sulfa 94.5 0.0087 3E-07 46.6 0.8 22 31-52 12-33 (186)
221 3jvv_A Twitching mobility prot 94.5 0.004 1.4E-07 54.5 -1.3 34 21-54 112-145 (356)
222 1rz3_A Hypothetical protein rb 94.5 0.01 3.6E-07 47.0 1.2 23 31-53 21-43 (201)
223 3tqf_A HPR(Ser) kinase; transf 94.5 0.0069 2.4E-07 47.9 0.1 19 32-50 16-34 (181)
224 3ney_A 55 kDa erythrocyte memb 94.5 0.0054 1.9E-07 49.3 -0.6 24 30-53 17-40 (197)
225 2ewv_A Twitching motility prot 94.4 0.0047 1.6E-07 54.3 -1.2 33 22-54 126-158 (372)
226 3zvl_A Bifunctional polynucleo 94.3 0.011 3.8E-07 52.6 1.1 29 31-59 257-288 (416)
227 3ake_A Cytidylate kinase; CMP 94.3 0.0074 2.5E-07 47.5 -0.1 26 34-59 4-32 (208)
228 2yhs_A FTSY, cell division pro 94.3 0.0038 1.3E-07 57.1 -2.0 25 30-54 291-315 (503)
229 2f6r_A COA synthase, bifunctio 94.3 0.008 2.7E-07 50.6 0.1 29 32-60 75-105 (281)
230 1pui_A ENGB, probable GTP-bind 94.2 0.013 4.4E-07 46.0 1.2 31 27-57 21-51 (210)
231 1m7g_A Adenylylsulfate kinase; 94.2 0.011 3.8E-07 47.1 0.8 24 29-52 22-45 (211)
232 3bh0_A DNAB-like replicative h 94.2 0.012 4E-07 50.4 0.8 32 19-50 54-86 (315)
233 2orw_A Thymidine kinase; TMTK, 94.1 0.0087 3E-07 47.2 -0.0 16 34-49 5-20 (184)
234 1z6t_A APAF-1, apoptotic prote 94.1 0.023 8E-07 52.1 2.8 40 1-51 127-166 (591)
235 1s96_A Guanylate kinase, GMP k 94.1 0.0068 2.3E-07 49.3 -0.8 25 30-54 14-38 (219)
236 3tif_A Uncharacterized ABC tra 94.0 0.008 2.7E-07 49.3 -0.4 27 29-55 28-54 (235)
237 2cbz_A Multidrug resistance-as 94.0 0.008 2.7E-07 49.4 -0.4 27 29-55 28-54 (237)
238 3b85_A Phosphate starvation-in 94.0 0.0085 2.9E-07 48.3 -0.3 23 33-55 23-45 (208)
239 2ged_A SR-beta, signal recogni 94.0 0.013 4.5E-07 45.3 0.8 28 30-57 46-73 (193)
240 4a1f_A DNAB helicase, replicat 93.9 0.043 1.5E-06 47.6 4.1 34 17-50 30-64 (338)
241 2i3b_A HCR-ntpase, human cance 93.9 0.0061 2.1E-07 48.5 -1.3 21 34-54 3-23 (189)
242 3e70_C DPA, signal recognition 93.9 0.017 6E-07 49.8 1.5 25 30-54 127-151 (328)
243 2pez_A Bifunctional 3'-phospho 93.9 0.012 4E-07 45.5 0.3 29 32-60 5-39 (179)
244 2pcj_A ABC transporter, lipopr 93.9 0.007 2.4E-07 49.3 -1.0 25 31-55 29-53 (224)
245 1b0u_A Histidine permease; ABC 93.8 0.0094 3.2E-07 49.7 -0.4 26 30-55 30-55 (262)
246 2gk6_A Regulator of nonsense t 93.8 0.012 4.1E-07 55.0 0.3 18 33-50 196-213 (624)
247 1odf_A YGR205W, hypothetical 3 93.8 0.0085 2.9E-07 50.8 -0.7 20 31-50 30-49 (290)
248 3asz_A Uridine kinase; cytidin 93.8 0.0069 2.4E-07 48.0 -1.3 23 32-54 6-28 (211)
249 2h92_A Cytidylate kinase; ross 93.7 0.015 5.1E-07 46.3 0.6 27 33-59 4-33 (219)
250 1mv5_A LMRA, multidrug resista 93.6 0.01 3.4E-07 48.9 -0.5 27 29-55 25-51 (243)
251 3fvq_A Fe(3+) IONS import ATP- 93.6 0.0077 2.6E-07 52.8 -1.3 24 32-55 30-53 (359)
252 1rj9_A FTSY, signal recognitio 93.6 0.013 4.5E-07 50.0 0.2 23 32-54 102-124 (304)
253 2onk_A Molybdate/tungstate ABC 93.6 0.0092 3.1E-07 49.2 -0.9 26 29-55 22-47 (240)
254 1zu4_A FTSY; GTPase, signal re 93.5 0.0071 2.4E-07 52.1 -1.7 24 30-53 103-126 (320)
255 2ixe_A Antigen peptide transpo 93.5 0.012 4.1E-07 49.4 -0.3 26 30-55 43-68 (271)
256 1sgw_A Putative ABC transporte 93.5 0.012 4.1E-07 47.7 -0.3 25 31-55 34-58 (214)
257 2ghi_A Transport protein; mult 93.5 0.012 4E-07 49.1 -0.4 27 29-55 43-69 (260)
258 3upu_A ATP-dependent DNA helic 93.5 0.015 5.1E-07 52.2 0.3 17 34-50 47-63 (459)
259 2olj_A Amino acid ABC transpor 93.5 0.012 4.1E-07 49.2 -0.4 26 30-55 48-73 (263)
260 1g6h_A High-affinity branched- 93.5 0.0089 3E-07 49.7 -1.2 24 32-55 33-56 (257)
261 2f9l_A RAB11B, member RAS onco 93.4 0.009 3.1E-07 46.8 -1.2 24 33-56 6-29 (199)
262 2q6t_A DNAB replication FORK h 93.4 0.02 6.9E-07 51.2 1.0 23 28-50 196-218 (444)
263 3rlf_A Maltose/maltodextrin im 93.4 0.011 3.6E-07 52.4 -0.9 25 31-55 28-52 (381)
264 2yyz_A Sugar ABC transporter, 93.4 0.012 4E-07 51.7 -0.6 25 31-55 28-52 (359)
265 2it1_A 362AA long hypothetical 93.4 0.012 4E-07 51.7 -0.6 24 32-55 29-52 (362)
266 3gfo_A Cobalt import ATP-bindi 93.3 0.013 4.5E-07 49.3 -0.3 24 32-55 34-57 (275)
267 2nzj_A GTP-binding protein REM 93.3 0.015 5.3E-07 43.8 0.1 26 33-58 5-30 (175)
268 1z47_A CYSA, putative ABC-tran 93.3 0.012 4.2E-07 51.5 -0.5 24 32-55 41-64 (355)
269 2fu5_C RAS-related protein RAB 93.3 0.028 9.6E-07 42.9 1.6 26 32-57 8-33 (183)
270 1v43_A Sugar-binding transport 93.3 0.012 4.2E-07 51.8 -0.6 25 31-55 36-60 (372)
271 1ji0_A ABC transporter; ATP bi 93.3 0.013 4.6E-07 48.1 -0.3 25 31-55 31-55 (240)
272 2pze_A Cystic fibrosis transme 93.3 0.011 3.7E-07 48.3 -0.9 25 31-55 33-57 (229)
273 1q3t_A Cytidylate kinase; nucl 93.3 0.019 6.5E-07 46.6 0.6 29 31-59 15-46 (236)
274 2zej_A Dardarin, leucine-rich 93.3 0.014 4.8E-07 45.1 -0.2 22 34-55 4-25 (184)
275 3l0i_B RAS-related protein RAB 93.2 0.046 1.6E-06 42.6 2.8 26 33-58 34-59 (199)
276 2ff7_A Alpha-hemolysin translo 93.2 0.011 3.8E-07 48.9 -0.9 25 31-55 34-58 (247)
277 2yz2_A Putative ABC transporte 93.2 0.014 4.7E-07 48.8 -0.4 26 30-55 31-56 (266)
278 2px0_A Flagellar biosynthesis 93.2 0.021 7.1E-07 48.5 0.7 21 31-51 104-124 (296)
279 2qi9_C Vitamin B12 import ATP- 93.2 0.012 4E-07 48.9 -0.9 25 31-55 25-49 (249)
280 2r6a_A DNAB helicase, replicat 93.2 0.022 7.5E-07 51.1 0.9 23 28-50 199-221 (454)
281 3e1s_A Exodeoxyribonuclease V, 93.2 0.018 6.1E-07 53.5 0.3 19 32-50 204-222 (574)
282 1vpl_A ABC transporter, ATP-bi 93.1 0.014 4.9E-07 48.5 -0.4 26 30-55 39-64 (256)
283 1g29_1 MALK, maltose transport 93.1 0.014 4.7E-07 51.4 -0.5 25 31-55 28-52 (372)
284 1oix_A RAS-related protein RAB 93.1 0.0099 3.4E-07 46.5 -1.3 24 34-57 31-54 (191)
285 2zu0_C Probable ATP-dependent 93.1 0.013 4.4E-07 49.0 -0.7 26 30-55 44-69 (267)
286 1uj2_A Uridine-cytidine kinase 93.1 0.019 6.4E-07 47.2 0.3 26 31-56 21-49 (252)
287 3a8t_A Adenylate isopentenyltr 93.1 0.027 9.4E-07 48.9 1.3 27 33-59 41-70 (339)
288 3kl4_A SRP54, signal recogniti 93.1 0.014 4.7E-07 52.5 -0.6 20 32-51 97-116 (433)
289 3q72_A GTP-binding protein RAD 93.0 0.015 5.1E-07 43.6 -0.4 24 34-57 4-27 (166)
290 2jeo_A Uridine-cytidine kinase 93.0 0.012 4.2E-07 48.1 -0.9 20 35-54 28-47 (245)
291 3k53_A Ferrous iron transport 93.0 0.016 5.4E-07 48.2 -0.3 25 33-57 4-28 (271)
292 3tw8_B RAS-related protein RAB 93.0 0.017 5.8E-07 43.7 -0.0 27 32-58 9-35 (181)
293 4g1u_C Hemin import ATP-bindin 93.0 0.016 5.5E-07 48.5 -0.2 25 31-55 36-60 (266)
294 3cmw_A Protein RECA, recombina 92.9 0.022 7.6E-07 59.0 0.6 32 19-50 367-401 (1706)
295 2ihy_A ABC transporter, ATP-bi 92.9 0.013 4.6E-07 49.3 -0.9 25 31-55 46-70 (279)
296 2d2e_A SUFC protein; ABC-ATPas 92.9 0.012 4E-07 48.7 -1.3 25 31-55 28-52 (250)
297 3dm5_A SRP54, signal recogniti 92.9 0.018 6.1E-07 51.9 -0.2 20 31-50 99-118 (443)
298 2oap_1 GSPE-2, type II secreti 92.9 0.016 5.4E-07 53.1 -0.5 25 30-54 258-282 (511)
299 2nq2_C Hypothetical ABC transp 92.8 0.014 4.7E-07 48.5 -0.9 25 31-55 30-54 (253)
300 3vkg_A Dynein heavy chain, cyt 92.8 0.026 9E-07 61.5 0.9 34 31-64 1303-1340(3245)
301 2wji_A Ferrous iron transport 92.8 0.016 5.6E-07 43.9 -0.5 24 34-57 5-28 (165)
302 4eaq_A DTMP kinase, thymidylat 92.7 0.026 9E-07 45.9 0.7 19 32-50 26-44 (229)
303 1gtv_A TMK, thymidylate kinase 92.7 0.0073 2.5E-07 47.8 -2.6 16 35-50 3-18 (214)
304 3d31_A Sulfate/molybdate ABC t 92.7 0.01 3.5E-07 51.8 -1.9 26 30-55 24-49 (348)
305 3cmu_A Protein RECA, recombina 92.7 0.031 1.1E-06 58.8 1.2 35 16-50 364-401 (2050)
306 1nrj_B SR-beta, signal recogni 92.7 0.017 5.9E-07 45.6 -0.5 24 31-54 11-34 (218)
307 3aez_A Pantothenate kinase; tr 92.7 0.016 5.6E-07 49.6 -0.7 24 31-54 89-112 (312)
308 2pjz_A Hypothetical protein ST 92.6 0.019 6.6E-07 48.0 -0.3 25 32-56 30-54 (263)
309 2b8t_A Thymidine kinase; deoxy 92.6 0.024 8.1E-07 46.3 0.2 17 34-50 14-30 (223)
310 2p5s_A RAS and EF-hand domain 92.6 0.015 5.1E-07 45.5 -1.0 33 25-57 21-53 (199)
311 2r8r_A Sensor protein; KDPD, P 92.6 0.024 8E-07 46.6 0.2 17 33-49 7-23 (228)
312 2wjy_A Regulator of nonsense t 92.6 0.024 8.3E-07 54.7 0.3 17 34-50 373-389 (800)
313 1moz_A ARL1, ADP-ribosylation 92.5 0.033 1.1E-06 42.4 1.0 27 31-57 17-43 (183)
314 1p9r_A General secretion pathw 92.5 0.017 6E-07 51.5 -0.7 25 30-54 164-189 (418)
315 1w36_D RECD, exodeoxyribonucle 92.5 0.025 8.5E-07 52.8 0.3 19 32-50 164-182 (608)
316 1u8z_A RAS-related protein RAL 92.5 0.017 5.8E-07 43.0 -0.7 25 33-57 5-29 (168)
317 2erx_A GTP-binding protein DI- 92.5 0.019 6.6E-07 43.0 -0.4 24 34-57 5-28 (172)
318 1p5z_B DCK, deoxycytidine kina 92.5 0.027 9.3E-07 46.4 0.5 22 31-52 23-44 (263)
319 1tf7_A KAIC; homohexamer, hexa 92.5 0.02 6.9E-07 52.3 -0.4 24 28-51 35-58 (525)
320 1z2a_A RAS-related protein RAB 92.5 0.014 4.9E-07 43.6 -1.2 24 33-56 6-29 (168)
321 1kao_A RAP2A; GTP-binding prot 92.5 0.018 6E-07 42.9 -0.7 25 33-57 4-28 (167)
322 2wjg_A FEOB, ferrous iron tran 92.5 0.023 7.7E-07 43.6 -0.1 25 33-57 8-32 (188)
323 3q85_A GTP-binding protein REM 92.5 0.019 6.4E-07 43.1 -0.5 22 34-55 4-25 (169)
324 3gd7_A Fusion complex of cysti 92.5 0.017 5.8E-07 51.2 -0.9 27 30-56 45-71 (390)
325 2lkc_A Translation initiation 92.4 0.028 9.5E-07 42.5 0.4 28 31-58 7-34 (178)
326 3foz_A TRNA delta(2)-isopenten 92.4 0.032 1.1E-06 48.0 0.7 29 31-59 9-40 (316)
327 2ce2_X GTPase HRAS; signaling 92.4 0.016 5.6E-07 42.9 -0.9 24 34-57 5-28 (166)
328 2dyk_A GTP-binding protein; GT 92.3 0.016 5.3E-07 43.2 -1.1 23 34-56 3-25 (161)
329 2bbs_A Cystic fibrosis transme 92.3 0.02 6.8E-07 48.6 -0.6 24 32-55 64-87 (290)
330 2xzl_A ATP-dependent helicase 92.3 0.027 9.2E-07 54.4 0.2 17 34-50 377-393 (802)
331 3sfz_A APAF-1, apoptotic pepti 92.2 0.058 2E-06 53.2 2.5 40 1-51 127-166 (1249)
332 4dsu_A GTPase KRAS, isoform 2B 92.2 0.02 6.9E-07 43.7 -0.6 24 34-57 6-29 (189)
333 1wms_A RAB-9, RAB9, RAS-relate 92.2 0.017 5.8E-07 43.8 -1.1 24 33-56 8-31 (177)
334 3gmt_A Adenylate kinase; ssgci 92.2 0.02 7E-07 47.0 -0.7 27 34-60 10-39 (230)
335 2pt7_A CAG-ALFA; ATPase, prote 92.2 0.021 7.3E-07 49.2 -0.6 25 30-54 169-193 (330)
336 1ky3_A GTP-binding protein YPT 92.2 0.017 5.8E-07 43.8 -1.1 25 32-56 8-32 (182)
337 3kta_A Chromosome segregation 92.2 0.018 6.2E-07 44.4 -1.0 20 34-53 28-47 (182)
338 2a5y_B CED-4; apoptosis; HET: 92.1 0.066 2.2E-06 49.1 2.6 42 2-53 132-173 (549)
339 1np6_A Molybdopterin-guanine d 92.1 0.037 1.3E-06 43.3 0.8 22 31-52 5-26 (174)
340 1ek0_A Protein (GTP-binding pr 92.1 0.017 5.7E-07 43.2 -1.2 23 34-56 5-27 (170)
341 1tf7_A KAIC; homohexamer, hexa 92.1 0.015 5.1E-07 53.2 -1.8 27 28-54 277-303 (525)
342 1z0j_A RAB-22, RAS-related pro 92.1 0.018 6E-07 43.2 -1.1 25 33-57 7-31 (170)
343 1g16_A RAS-related protein SEC 92.1 0.016 5.3E-07 43.5 -1.4 25 33-57 4-28 (170)
344 1oxx_K GLCV, glucose, ABC tran 92.1 0.011 3.7E-07 51.7 -2.7 26 30-55 29-54 (353)
345 2v3c_C SRP54, signal recogniti 92.0 0.028 9.7E-07 50.4 0.0 20 32-51 99-118 (432)
346 1z08_A RAS-related protein RAB 91.9 0.019 6.5E-07 43.1 -1.1 24 33-56 7-30 (170)
347 2b6h_A ADP-ribosylation factor 91.9 0.036 1.2E-06 43.1 0.5 36 23-58 20-55 (192)
348 2gza_A Type IV secretion syste 91.9 0.016 5.6E-07 50.5 -1.7 26 29-54 172-197 (361)
349 3bgw_A DNAB-like replicative h 91.8 0.036 1.2E-06 49.7 0.5 32 19-50 183-215 (444)
350 2hxs_A RAB-26, RAS-related pro 91.8 0.02 7E-07 43.3 -1.0 24 33-56 7-30 (178)
351 1a7j_A Phosphoribulokinase; tr 91.7 0.047 1.6E-06 46.1 1.0 17 34-50 7-23 (290)
352 1svi_A GTP-binding protein YSX 91.7 0.03 1E-06 43.2 -0.2 28 31-58 22-49 (195)
353 2a9k_A RAS-related protein RAL 91.7 0.025 8.5E-07 43.0 -0.7 26 32-57 18-43 (187)
354 4bas_A ADP-ribosylation factor 91.7 0.033 1.1E-06 43.0 0.0 29 31-59 16-44 (199)
355 4djt_A GTP-binding nuclear pro 91.7 0.044 1.5E-06 43.2 0.8 26 32-57 11-36 (218)
356 3d3q_A TRNA delta(2)-isopenten 91.6 0.035 1.2E-06 48.3 0.1 27 33-59 8-37 (340)
357 2qag_B Septin-6, protein NEDD5 91.6 0.042 1.5E-06 49.2 0.7 23 35-57 45-67 (427)
358 2cxx_A Probable GTP-binding pr 91.6 0.023 7.8E-07 43.5 -0.9 24 34-57 3-26 (190)
359 1knx_A Probable HPR(Ser) kinas 91.6 0.039 1.3E-06 47.4 0.4 19 32-50 147-165 (312)
360 3tqc_A Pantothenate kinase; bi 91.6 0.034 1.2E-06 47.9 0.0 19 33-51 93-111 (321)
361 1zbd_A Rabphilin-3A; G protein 91.6 0.028 9.6E-07 43.8 -0.5 24 33-56 9-32 (203)
362 3a1s_A Iron(II) transport prot 91.5 0.032 1.1E-06 46.2 -0.2 26 33-58 6-31 (258)
363 1r2q_A RAS-related protein RAB 91.5 0.021 7.3E-07 42.6 -1.2 24 33-56 7-30 (170)
364 1fzq_A ADP-ribosylation factor 91.5 0.051 1.7E-06 41.8 1.0 26 32-57 16-41 (181)
365 1sq5_A Pantothenate kinase; P- 91.5 0.02 6.7E-07 48.8 -1.6 22 33-54 81-102 (308)
366 3bc1_A RAS-related protein RAB 91.5 0.022 7.5E-07 43.6 -1.2 22 33-54 12-33 (195)
367 1lw7_A Transcriptional regulat 91.5 0.017 5.8E-07 50.2 -2.0 23 32-54 170-192 (365)
368 3lxx_A GTPase IMAP family memb 91.5 0.03 1E-06 45.3 -0.4 27 32-58 29-55 (239)
369 2yc2_C IFT27, small RAB-relate 91.5 0.043 1.5E-06 42.6 0.5 23 33-55 21-43 (208)
370 1c1y_A RAS-related protein RAP 91.4 0.027 9.2E-07 42.0 -0.7 24 34-57 5-28 (167)
371 2y8e_A RAB-protein 6, GH09086P 91.4 0.021 7.1E-07 43.2 -1.4 24 33-56 15-38 (179)
372 1q57_A DNA primase/helicase; d 91.4 0.031 1E-06 50.7 -0.5 23 28-50 238-260 (503)
373 3sop_A Neuronal-specific septi 91.4 0.02 6.7E-07 48.0 -1.7 21 34-54 4-24 (270)
374 3clv_A RAB5 protein, putative; 91.4 0.024 8.1E-07 43.6 -1.1 25 32-56 7-31 (208)
375 2j37_W Signal recognition part 91.3 0.037 1.3E-06 50.6 0.0 23 31-53 100-122 (504)
376 1z0f_A RAB14, member RAS oncog 91.3 0.028 9.5E-07 42.4 -0.7 26 32-57 15-40 (179)
377 2oil_A CATX-8, RAS-related pro 91.3 0.024 8.2E-07 43.8 -1.2 25 33-57 26-50 (193)
378 3exa_A TRNA delta(2)-isopenten 91.2 0.044 1.5E-06 47.2 0.4 18 33-50 4-21 (322)
379 3pqc_A Probable GTP-binding pr 91.2 0.035 1.2E-06 42.6 -0.3 25 32-56 23-47 (195)
380 1upt_A ARL1, ADP-ribosylation 91.2 0.031 1E-06 41.9 -0.6 27 31-57 6-32 (171)
381 1j8m_F SRP54, signal recogniti 91.1 0.043 1.5E-06 46.6 0.2 21 32-52 98-118 (297)
382 2efe_B Small GTP-binding prote 91.1 0.026 8.9E-07 42.8 -1.1 24 33-56 13-36 (181)
383 3con_A GTPase NRAS; structural 91.1 0.029 1E-06 43.1 -0.8 25 33-57 22-46 (190)
384 3cbq_A GTP-binding protein REM 91.1 0.037 1.3E-06 43.3 -0.2 23 33-55 24-46 (195)
385 1f6b_A SAR1; gtpases, N-termin 91.1 0.029 1E-06 43.9 -0.8 26 32-57 25-50 (198)
386 3fdi_A Uncharacterized protein 91.1 0.04 1.4E-06 43.9 -0.0 26 34-59 8-36 (201)
387 3c5c_A RAS-like protein 12; GD 91.0 0.031 1.1E-06 43.3 -0.8 25 33-57 22-46 (187)
388 3b1v_A Ferrous iron uptake tra 91.0 0.036 1.2E-06 46.4 -0.4 24 33-56 4-27 (272)
389 3ice_A Transcription terminati 91.0 0.028 9.5E-07 50.0 -1.2 41 29-69 171-217 (422)
390 3kkq_A RAS-related protein M-R 90.9 0.032 1.1E-06 42.5 -0.7 26 32-57 18-43 (183)
391 2bme_A RAB4A, RAS-related prot 90.9 0.025 8.4E-07 43.3 -1.4 22 33-54 11-32 (186)
392 2fn4_A P23, RAS-related protei 90.9 0.03 1E-06 42.3 -0.9 25 33-57 10-34 (181)
393 2bov_A RAla, RAS-related prote 90.9 0.031 1.1E-06 43.4 -0.9 25 32-56 14-38 (206)
394 2axn_A 6-phosphofructo-2-kinas 90.9 0.033 1.1E-06 51.0 -0.8 21 32-52 35-55 (520)
395 1ksh_A ARF-like protein 2; sma 90.9 0.038 1.3E-06 42.3 -0.3 26 31-56 17-42 (186)
396 2gj8_A MNME, tRNA modification 90.9 0.03 1E-06 42.8 -0.9 24 33-56 5-28 (172)
397 2ffh_A Protein (FFH); SRP54, s 90.9 0.051 1.7E-06 48.6 0.4 20 31-50 97-116 (425)
398 3ihw_A Centg3; RAS, centaurin, 90.9 0.029 9.9E-07 43.4 -1.1 25 33-57 21-45 (184)
399 1m7b_A RND3/RHOE small GTP-bin 90.8 0.025 8.7E-07 43.4 -1.4 26 32-57 7-32 (184)
400 3nh6_A ATP-binding cassette SU 90.8 0.025 8.5E-07 48.4 -1.6 26 30-55 78-103 (306)
401 2gf9_A RAS-related protein RAB 90.8 0.028 9.7E-07 43.3 -1.2 25 33-57 23-47 (189)
402 3tui_C Methionine import ATP-b 90.8 0.031 1.1E-06 49.1 -1.0 25 31-55 53-77 (366)
403 2atv_A RERG, RAS-like estrogen 90.8 0.04 1.4E-06 42.8 -0.3 27 31-57 27-53 (196)
404 2qu8_A Putative nucleolar GTP- 90.8 0.045 1.5E-06 43.8 -0.0 27 32-58 29-55 (228)
405 2g6b_A RAS-related protein RAB 90.7 0.029 9.8E-07 42.5 -1.2 26 32-57 10-35 (180)
406 3iby_A Ferrous iron transport 90.7 0.042 1.4E-06 45.5 -0.2 26 33-58 2-27 (256)
407 2il1_A RAB12; G-protein, GDP, 90.6 0.042 1.4E-06 42.6 -0.3 26 33-58 27-52 (192)
408 2h57_A ADP-ribosylation factor 90.6 0.045 1.5E-06 42.2 -0.2 25 32-56 21-45 (190)
409 2f7s_A C25KG, RAS-related prot 90.6 0.042 1.4E-06 43.3 -0.4 24 33-56 26-49 (217)
410 3t5g_A GTP-binding protein RHE 90.5 0.032 1.1E-06 42.5 -1.1 25 33-57 7-31 (181)
411 1ah9_A IF1, initiation factor 90.5 0.71 2.4E-05 30.5 5.8 47 161-207 8-56 (71)
412 3tkl_A RAS-related protein RAB 90.5 0.031 1.1E-06 43.0 -1.2 24 33-56 17-40 (196)
413 1vg8_A RAS-related protein RAB 90.4 0.033 1.1E-06 43.4 -1.1 23 32-54 8-30 (207)
414 1x3s_A RAS-related protein RAB 90.4 0.032 1.1E-06 42.9 -1.2 22 33-54 16-37 (195)
415 2iwr_A Centaurin gamma 1; ANK 90.4 0.023 8E-07 43.1 -2.0 25 33-57 8-32 (178)
416 2vp4_A Deoxynucleoside kinase; 90.4 0.052 1.8E-06 43.9 0.0 22 34-55 22-43 (230)
417 1u0l_A Probable GTPase ENGC; p 90.4 0.047 1.6E-06 46.3 -0.3 23 33-55 170-192 (301)
418 1mh1_A RAC1; GTP-binding, GTPa 90.3 0.039 1.3E-06 41.9 -0.7 21 34-54 7-27 (186)
419 3llm_A ATP-dependent RNA helic 90.3 0.074 2.5E-06 43.0 0.9 19 32-50 76-94 (235)
420 1z06_A RAS-related protein RAB 90.2 0.035 1.2E-06 42.8 -1.1 24 33-56 21-44 (189)
421 3cph_A RAS-related protein SEC 90.2 0.035 1.2E-06 43.5 -1.2 26 31-56 19-44 (213)
422 1ls1_A Signal recognition part 90.2 0.065 2.2E-06 45.4 0.5 23 31-53 97-119 (295)
423 1ny5_A Transcriptional regulat 90.2 0.1 3.5E-06 45.7 1.8 34 31-64 159-198 (387)
424 2fg5_A RAB-22B, RAS-related pr 90.2 0.032 1.1E-06 43.2 -1.4 24 33-56 24-47 (192)
425 1j3b_A ATP-dependent phosphoen 90.1 0.067 2.3E-06 49.1 0.5 20 32-51 225-244 (529)
426 1zj6_A ADP-ribosylation factor 90.1 0.045 1.5E-06 42.1 -0.6 28 31-58 15-42 (187)
427 2oqk_A Putative translation in 90.1 0.43 1.5E-05 34.9 4.8 62 157-218 30-97 (117)
428 3th5_A RAS-related C3 botulinu 89.6 0.057 1.9E-06 42.2 0.0 26 32-57 30-55 (204)
429 3bwd_D RAC-like GTP-binding pr 90.1 0.036 1.2E-06 42.1 -1.2 26 32-57 8-33 (182)
430 2rcn_A Probable GTPase ENGC; Y 90.1 0.046 1.6E-06 47.8 -0.6 23 33-55 216-238 (358)
431 2a5j_A RAS-related protein RAB 90.0 0.036 1.2E-06 42.8 -1.2 25 33-57 22-46 (191)
432 2h17_A ADP-ribosylation factor 90.0 0.036 1.2E-06 42.4 -1.2 26 32-57 21-46 (181)
433 2x77_A ADP-ribosylation factor 90.0 0.11 3.7E-06 39.8 1.6 29 31-59 21-49 (189)
434 3v9p_A DTMP kinase, thymidylat 90.0 0.065 2.2E-06 43.8 0.3 18 33-50 26-43 (227)
435 2o52_A RAS-related protein RAB 90.0 0.041 1.4E-06 43.0 -0.9 26 32-57 25-50 (200)
436 2qtf_A Protein HFLX, GTP-bindi 90.0 0.087 3E-06 46.0 1.1 24 34-57 181-204 (364)
437 2q3h_A RAS homolog gene family 89.9 0.048 1.6E-06 42.4 -0.5 26 32-57 20-45 (201)
438 1r8s_A ADP-ribosylation factor 89.9 0.065 2.2E-06 39.9 0.2 23 34-56 2-24 (164)
439 2dpy_A FLII, flagellum-specifi 89.9 0.044 1.5E-06 49.2 -0.9 24 31-54 156-179 (438)
440 1zd9_A ADP-ribosylation factor 89.8 0.038 1.3E-06 42.6 -1.2 25 33-57 23-47 (188)
441 1bif_A 6-phosphofructo-2-kinas 89.8 0.047 1.6E-06 49.2 -0.8 22 32-53 39-60 (469)
442 2npi_A Protein CLP1; CLP1-PCF1 89.8 0.035 1.2E-06 50.2 -1.6 26 29-54 135-160 (460)
443 1m2o_B GTP-binding protein SAR 89.8 0.035 1.2E-06 43.1 -1.4 25 32-56 23-47 (190)
444 2olr_A Phosphoenolpyruvate car 89.8 0.071 2.4E-06 49.0 0.4 19 32-50 241-259 (540)
445 2bcg_Y Protein YP2, GTP-bindin 89.7 0.036 1.2E-06 43.3 -1.4 22 33-54 9-30 (206)
446 3oes_A GTPase rhebl1; small GT 89.7 0.043 1.5E-06 42.8 -0.9 28 31-58 23-50 (201)
447 3reg_A RHO-like small GTPase; 89.7 0.045 1.5E-06 42.3 -0.8 25 33-57 24-48 (194)
448 3lxw_A GTPase IMAP family memb 89.6 0.054 1.9E-06 44.4 -0.4 27 32-58 21-47 (247)
449 4edh_A DTMP kinase, thymidylat 89.6 0.063 2.1E-06 43.3 -0.0 18 33-50 7-24 (213)
450 2qag_C Septin-7; cell cycle, c 89.6 0.063 2.2E-06 47.9 -0.1 24 34-57 33-56 (418)
451 2qm8_A GTPase/ATPase; G protei 89.6 0.05 1.7E-06 47.0 -0.7 23 31-53 54-76 (337)
452 1gwn_A RHO-related GTP-binding 89.6 0.038 1.3E-06 43.7 -1.4 25 33-57 29-53 (205)
453 2yl4_A ATP-binding cassette SU 89.6 0.083 2.9E-06 49.0 0.7 24 32-55 370-393 (595)
454 2fh5_B SR-beta, signal recogni 89.4 0.051 1.8E-06 42.7 -0.7 26 32-57 7-32 (214)
455 1xjc_A MOBB protein homolog; s 89.4 0.075 2.6E-06 41.5 0.2 18 33-50 5-22 (169)
456 3i8s_A Ferrous iron transport 89.4 0.059 2E-06 44.9 -0.4 25 33-57 4-28 (274)
457 2j1l_A RHO-related GTP-binding 89.3 0.058 2E-06 42.7 -0.5 25 33-57 35-59 (214)
458 2ocp_A DGK, deoxyguanosine kin 89.2 0.071 2.4E-06 43.2 -0.0 18 33-50 3-20 (241)
459 3eph_A TRNA isopentenyltransfe 89.2 0.056 1.9E-06 48.1 -0.7 19 32-50 2-20 (409)
460 2obl_A ESCN; ATPase, hydrolase 89.2 0.041 1.4E-06 47.8 -1.6 24 31-54 70-93 (347)
461 1ko7_A HPR kinase/phosphatase; 89.0 0.075 2.6E-06 45.6 0.0 19 32-50 144-162 (314)
462 3lfu_A DNA helicase II; SF1 he 89.0 0.092 3.1E-06 48.7 0.6 19 31-49 21-39 (647)
463 3qf4_B Uncharacterized ABC tra 89.0 0.13 4.3E-06 47.8 1.5 25 30-54 379-403 (598)
464 4a82_A Cystic fibrosis transme 89.0 0.091 3.1E-06 48.6 0.6 25 31-55 366-390 (578)
465 2ew1_A RAS-related protein RAB 89.0 0.044 1.5E-06 43.2 -1.4 22 33-54 27-48 (201)
466 1ytm_A Phosphoenolpyruvate car 89.0 0.09 3.1E-06 48.3 0.5 18 33-50 236-253 (532)
467 1c9k_A COBU, adenosylcobinamid 88.9 0.078 2.7E-06 41.9 0.0 28 35-62 2-31 (180)
468 1ii2_A Phosphoenolpyruvate car 88.9 0.091 3.1E-06 48.2 0.5 19 32-50 213-231 (524)
469 2gf0_A GTP-binding protein DI- 88.9 0.046 1.6E-06 42.2 -1.3 25 32-56 8-32 (199)
470 1f2t_A RAD50 ABC-ATPase; DNA d 88.9 0.053 1.8E-06 41.1 -1.0 18 35-52 26-43 (149)
471 3t1o_A Gliding protein MGLA; G 88.9 0.085 2.9E-06 40.3 0.2 20 33-52 15-34 (198)
472 4i1u_A Dephospho-COA kinase; s 88.8 0.096 3.3E-06 42.3 0.5 29 33-61 10-40 (210)
473 3vkw_A Replicase large subunit 88.7 0.083 2.9E-06 47.5 0.1 21 31-51 160-180 (446)
474 3f8t_A Predicted ATPase involv 88.6 0.078 2.7E-06 48.2 -0.2 43 1-52 216-258 (506)
475 2xtp_A GTPase IMAP family memb 88.6 0.087 3E-06 43.0 0.1 27 31-57 21-47 (260)
476 2f1r_A Molybdopterin-guanine d 88.6 0.02 6.8E-07 44.7 -3.6 22 33-54 3-24 (171)
477 3b5x_A Lipid A export ATP-bind 88.6 0.075 2.6E-06 49.2 -0.3 25 31-55 368-392 (582)
478 1x6v_B Bifunctional 3'-phospho 88.5 0.15 5.1E-06 47.9 1.6 29 32-60 52-86 (630)
479 1yqt_A RNAse L inhibitor; ATP- 88.5 0.091 3.1E-06 48.3 0.1 26 30-55 45-70 (538)
480 2atx_A Small GTP binding prote 88.5 0.062 2.1E-06 41.4 -0.8 25 33-57 19-43 (194)
481 2fv8_A H6, RHO-related GTP-bin 88.4 0.052 1.8E-06 42.6 -1.3 25 33-57 26-50 (207)
482 3lv8_A DTMP kinase, thymidylat 88.4 0.081 2.8E-06 43.5 -0.2 18 33-50 28-45 (236)
483 2hup_A RAS-related protein RAB 88.4 0.053 1.8E-06 42.5 -1.3 24 33-56 30-53 (201)
484 2xxa_A Signal recognition part 88.4 0.057 1.9E-06 48.4 -1.3 20 31-50 99-118 (433)
485 1mky_A Probable GTP-binding pr 88.3 0.18 6.1E-06 44.9 2.0 53 2-56 152-204 (439)
486 1ega_A Protein (GTP-binding pr 88.3 0.091 3.1E-06 44.4 0.0 24 34-57 10-33 (301)
487 3cr8_A Sulfate adenylyltranfer 88.3 0.032 1.1E-06 51.6 -3.1 24 31-54 368-391 (552)
488 1puj_A YLQF, conserved hypothe 88.2 0.17 5.9E-06 42.4 1.7 54 2-58 92-146 (282)
489 3i4o_A Translation initiation 88.1 0.69 2.4E-05 31.4 4.4 48 161-208 16-65 (79)
490 3cpj_B GTP-binding protein YPT 88.1 0.061 2.1E-06 42.8 -1.1 24 33-56 14-37 (223)
491 3dz8_A RAS-related protein RAB 88.1 0.094 3.2E-06 40.4 -0.0 22 33-54 24-45 (191)
492 2qnr_A Septin-2, protein NEDD5 88.1 0.058 2E-06 45.7 -1.3 22 34-55 20-41 (301)
493 3hdt_A Putative kinase; struct 88.0 0.084 2.9E-06 42.9 -0.4 27 33-59 15-44 (223)
494 2gco_A H9, RHO-related GTP-bin 87.9 0.057 2E-06 42.1 -1.4 25 33-57 26-50 (201)
495 3q3j_B RHO-related GTP-binding 87.8 0.076 2.6E-06 42.1 -0.7 26 32-57 27-52 (214)
496 3euj_A Chromosome partition pr 87.8 0.07 2.4E-06 48.5 -1.1 25 29-54 27-51 (483)
497 4gzl_A RAS-related C3 botulinu 87.8 0.068 2.3E-06 42.0 -1.1 22 32-53 30-51 (204)
498 2dgy_A MGC11102 protein; EIF-1 87.7 2.2 7.5E-05 30.8 7.1 51 157-207 13-64 (111)
499 3t5d_A Septin-7; GTP-binding p 87.7 0.095 3.2E-06 43.5 -0.3 26 34-59 10-35 (274)
500 2wsm_A Hydrogenase expression/ 87.6 0.11 3.7E-06 41.0 0.1 20 32-51 30-49 (221)
No 1
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=99.95 E-value=2.2e-28 Score=181.62 Aligned_cols=93 Identities=30% Similarity=0.571 Sum_probs=80.6
Q ss_pred HHHhhhchhhhhHHHHHHHHhhhcCCCceeeEEEEEecCCeEEEEccCCCeEEEeecCCCCcCCCCCCCeEEecCCccee
Q psy7782 133 RNQERLKPQEEKNEEERSRVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAV 212 (225)
Q Consensus 133 ~~~~~~~~~~~~~~~l~~ev~~l~~~p~~vg~v~e~~d~~~~iV~~~~g~~~~v~v~~~vd~~~L~pG~~V~ln~~~~~I 212 (225)
+++.+++.++++++.+++|+++|++||+.||+|+|++|++++||++++|++|||+++++||+++|+||+||+||+++|+|
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~L~~~P~~Vg~v~e~~d~~~~iVk~s~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~I 90 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVARLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAI 90 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECTTSCEEEEETTSCEEEECBCTTSCTTTCCTTCEEEEETTTCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEecCCEEEEEeCCCCEEEEEcccccCHHHCCCCCEEEECCcceEe
Confidence 34456677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCCCCC
Q psy7782 213 VGVLSDDTDPMVT 225 (225)
Q Consensus 213 v~vLp~~~D~~v~ 225 (225)
|++||+++||+|+
T Consensus 91 v~iLp~e~Dp~V~ 103 (109)
T 2wg5_A 91 VNVLPTSKDPMVY 103 (109)
T ss_dssp EEEEC--------
T ss_pred EEeCCCCcCccch
Confidence 9999999999985
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.5e-28 Score=220.90 Aligned_cols=152 Identities=61% Similarity=1.046 Sum_probs=92.9
Q ss_pred hhhhcCCCCCCccccccccccCCCCccccCCccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHH
Q psy7782 73 DKKKKYEPPIPTRVGKKKRKAKGPDAAIKLPQVTPHTKCRLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKNEEERSRV 152 (225)
Q Consensus 73 ~~a~~~~p~iid~igk~r~~~~g~~~~~~l~~v~p~~~c~lr~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ev 152 (225)
.+-.++.|.+...+|++++ ++|+++++++|++.|+++|+++++++||++++|+++++++++++.++.++++.++.++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (437)
T 4b4t_I 18 NQKPKYEPPVQSKFGRKKR-KGGPATAEKLPNIYPSTRCKLKLLRMERIKDHLLLEEEFVSNSEILKPFEKKQEEEKKQL 96 (437)
T ss_dssp ----------------------------------------------------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCccccccccC-CCCcchhhcCcccCCcchhhHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHHHHHH
Confidence 3456677888888997765 579999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCceeeEEEEEecCCeEEEEccCCCeEEEeecCCCCcCCCCCCCeEEecCCcceeeeccCCCCCCCCC
Q psy7782 153 DDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVT 225 (225)
Q Consensus 153 ~~l~~~p~~vg~v~e~~d~~~~iV~~~~g~~~~v~v~~~vd~~~L~pG~~V~ln~~~~~Iv~vLp~~~D~~v~ 225 (225)
++++++|+.||+|+|++|++++||++++|++|||++.+++|++.|+||++|+||+++++|+++||+++||+|+
T Consensus 97 ~~~~~~p~~~g~~~~~~~~~~~iv~~~~~~~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~d~~~~ 169 (437)
T 4b4t_I 97 EEIRGNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVS 169 (437)
T ss_dssp HHHHCSSEEEEEEEEECTTSEEEEECSSSCCCEEECCTTSCGGGCCTTCEEEECTTTCCEEEEECCCSSCCCC
T ss_pred HhhcCCCceeEEEEEEecCCEEEEEcCCCCEEEEecccccCHhHccCCcEEEEeccCccceeecCCccCCcce
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999985
No 3
>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}
Probab=99.92 E-value=8.5e-25 Score=154.96 Aligned_cols=76 Identities=34% Similarity=0.580 Sum_probs=73.3
Q ss_pred hhHHHHHHHHhhhcCCCceeeEEEEEecCCeEEEEccCCCeEEEeecCCCCcCCCCCCCeEEecCCcceeeeccCC
Q psy7782 143 EKNEEERSRVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSD 218 (225)
Q Consensus 143 ~~~~~l~~ev~~l~~~p~~vg~v~e~~d~~~~iV~~~~g~~~~v~v~~~vd~~~L~pG~~V~ln~~~~~Iv~vLp~ 218 (225)
+|++.+++|+++|++||+.||+|+|++|++++||++++|++|||+++++||+++|+||+||+||+++|+||++||.
T Consensus 2 ~ev~~lkeei~~L~~~P~~vG~v~e~~dd~~~iVkss~g~~~~V~v~~~Vd~~~LkpG~rVaLn~~s~~Iv~vLp~ 77 (85)
T 3h43_A 2 KENEILRRELDRMRVPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPE 77 (85)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEEEEEEEETTEEEEEETTSSEEEEEBCTTSCGGGCCTTCEEEECTTTCCEEEECC-
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEEEcCCCEEEEEeCCCCeEEEEecCccCHHHCCCCCEEEECCcccCHhhhhhh
Confidence 5788999999999999999999999999999999999999999999999999999999999999999999999995
No 4
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4.7e-24 Score=190.79 Aligned_cols=90 Identities=39% Similarity=0.636 Sum_probs=80.7
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC--------C-CCcc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS--------N-SDKK 69 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~--------~-~~~~ 69 (225)
||+++|++|++.+.+|+++|++|..+|+.+|+|+|||||||||||++|+ .+++.+|+.++.++ + ..+|
T Consensus 152 Gl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr 231 (405)
T 4b4t_J 152 GLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVR 231 (405)
T ss_dssp SCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHH
Confidence 8999999999999999999999999999999999999999999999997 45568888776655 3 5569
Q ss_pred chhhhhhcCCCCCC-----cccccccc
Q psy7782 70 DDKDKKKKYEPPIP-----TRVGKKKR 91 (225)
Q Consensus 70 ~~f~~a~~~~p~ii-----d~igk~r~ 91 (225)
++|..|++++|||| |+++.+|.
T Consensus 232 ~lF~~Ar~~aP~IIFiDEiDai~~~R~ 258 (405)
T 4b4t_J 232 ELFVMAREHAPSIIFMDEIDSIGSTRV 258 (405)
T ss_dssp HHHHHHHHTCSEEEEEESSSCCTTSCS
T ss_pred HHHHHHHHhCCceEeeecchhhccCCC
Confidence 99999999999997 88887765
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.5e-23 Score=187.00 Aligned_cols=90 Identities=50% Similarity=0.709 Sum_probs=80.4
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC--------C-CCcc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS--------N-SDKK 69 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~--------~-~~~~ 69 (225)
||+++|++|++.+.+|+++|++|..+|+.+|+|+|||||||||||++|+ .+++.+|+.++.++ + ..+|
T Consensus 186 Gld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir 265 (437)
T 4b4t_I 186 GLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCR 265 (437)
T ss_dssp SCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHH
Confidence 8999999999999999999999999999999999999999999999997 44568888776655 3 4568
Q ss_pred chhhhhhcCCCCCC-----cccccccc
Q psy7782 70 DDKDKKKKYEPPIP-----TRVGKKKR 91 (225)
Q Consensus 70 ~~f~~a~~~~p~ii-----d~igk~r~ 91 (225)
.+|..|++++|||| |+++.+|.
T Consensus 266 ~lF~~Ar~~aP~IIfiDEiDai~~~R~ 292 (437)
T 4b4t_I 266 QIFKVAGENAPSIVFIDEIDAIGTKRY 292 (437)
T ss_dssp HHHHHHHHTCSEEEEEEEESSSSCCCS
T ss_pred HHHHHHHhcCCcEEEEehhhhhcccCC
Confidence 99999999999997 88887775
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=6e-23 Score=185.76 Aligned_cols=91 Identities=41% Similarity=0.691 Sum_probs=81.2
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC--------C-CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS--------N-SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~--------~-~~~ 68 (225)
.||++++++|++.+.+|+++|++|..+|+.+|+|+|||||||||||++|+ ..+|++|+.++.++ + ..+
T Consensus 184 gGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~i 263 (437)
T 4b4t_L 184 GGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARII 263 (437)
T ss_dssp CSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHH
Confidence 38999999999999999999999999999999999999999999999997 45668888777665 2 446
Q ss_pred cchhhhhhcCCCCCC-----cccccccc
Q psy7782 69 KDDKDKKKKYEPPIP-----TRVGKKKR 91 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii-----d~igk~r~ 91 (225)
+.+|..|+.++|||| |+++.+|.
T Consensus 264 r~~F~~A~~~~P~IifiDEiDai~~~R~ 291 (437)
T 4b4t_L 264 REMFAYAKEHEPCIIFMDEVDAIGGRRF 291 (437)
T ss_dssp HHHHHHHHHSCSEEEEEECCCSSSCCCS
T ss_pred HHHHHHHHhcCCceeeeecccccccccc
Confidence 899999999999997 88887775
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=4.4e-23 Score=186.52 Aligned_cols=91 Identities=34% Similarity=0.574 Sum_probs=80.5
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC--------C-CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS--------N-SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~--------~-~~~ 68 (225)
.|++++|++|.+.+.+|+++|++|..+|+++|+|+|||||||||||++|+ ..++.+|+.++.++ + ..+
T Consensus 184 gGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~i 263 (434)
T 4b4t_M 184 GGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLV 263 (434)
T ss_dssp CSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHH
Confidence 48999999999999999999999999999999999999999999999997 45568888776655 3 556
Q ss_pred cchhhhhhcCCCCCC-----cccccccc
Q psy7782 69 KDDKDKKKKYEPPIP-----TRVGKKKR 91 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii-----d~igk~r~ 91 (225)
|.+|..|+.++|||| |+++.+|.
T Consensus 264 r~lF~~A~~~aP~IifiDEiDal~~~R~ 291 (434)
T 4b4t_M 264 RDAFALAKEKAPTIIFIDELDAIGTKRF 291 (434)
T ss_dssp HHHHHHHHHHCSEEEEEECTHHHHCCCS
T ss_pred HHHHHHHHhcCCeEEeecchhhhhhccC
Confidence 899999999999997 77777664
No 8
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=4.4e-23 Score=186.28 Aligned_cols=91 Identities=37% Similarity=0.642 Sum_probs=80.5
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccc---ccCCceeeccCCC--------C-CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSP---ALGYHYYCRGAGS--------N-SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~---~~~~~~~~~~~~~--------~-~~~ 68 (225)
.||+++|++|++.+.+|+.+|++|..+|+.+|+|+|||||||||||++|++ .++.+|+.++.++ + ..+
T Consensus 175 gGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~i 254 (428)
T 4b4t_K 175 GGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMV 254 (428)
T ss_dssp CSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHH
Confidence 389999999999999999999999999999999999999999999999984 4568888777665 2 456
Q ss_pred cchhhhhhcCCCCCC-----cccccccc
Q psy7782 69 KDDKDKKKKYEPPIP-----TRVGKKKR 91 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii-----d~igk~r~ 91 (225)
+++|..|+.++|||+ |+++.+|.
T Consensus 255 r~lF~~A~~~aP~IifiDEiD~i~~~R~ 282 (428)
T 4b4t_K 255 RDVFRLARENAPSIIFIDEVDSIATKRF 282 (428)
T ss_dssp HHHHHHHHHTCSEEEEEECTHHHHCSCS
T ss_pred HHHHHHHHHcCCCeeechhhhhhhcccc
Confidence 899999999999997 77777664
No 9
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.1e-22 Score=184.29 Aligned_cols=91 Identities=33% Similarity=0.508 Sum_probs=80.5
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC--------C-CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS--------N-SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~--------~-~~~ 68 (225)
.||+++|++|++.+.+|+.+|+.|..+|+.+|+|+|||||||||||++|+ .+++.+|+.++.++ + ..+
T Consensus 212 gGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~i 291 (467)
T 4b4t_H 212 GGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMV 291 (467)
T ss_dssp TTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHH
Confidence 38999999999999999999999999999999999999999999999997 44568888776555 3 556
Q ss_pred cchhhhhhcCCCCCC-----cccccccc
Q psy7782 69 KDDKDKKKKYEPPIP-----TRVGKKKR 91 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii-----d~igk~r~ 91 (225)
|.+|..|+.++|||| |+++.+|.
T Consensus 292 r~lF~~Ar~~aP~IIfiDEiDai~~~R~ 319 (467)
T 4b4t_H 292 RELFEMARTKKACIIFFDEIDAVGGARF 319 (467)
T ss_dssp HHHHHHHHHTCSEEEEEECCTTTSBCCS
T ss_pred HHHHHHHHhcCCceEeeccccccccccc
Confidence 899999999999997 77887765
No 10
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=99.84 E-value=7e-21 Score=157.78 Aligned_cols=95 Identities=23% Similarity=0.210 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhhhchhhhhHHHHHHHHhhhcCCCceeeEEEEEecCCeEEEEccCCCeEEEeecCCCCcCCCCCCCeE
Q psy7782 124 YLLMEEEFIRNQERLKPQEEKNEEERSRVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSV 203 (225)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~~~~~~~l~~ev~~l~~~p~~vg~v~e~~d~~~~iV~~~~g~~~~v~v~~~vd~~~L~pG~~V 203 (225)
...+..++.++...++.+++|+.++++|+++|++||++||||++++|++.++|+ ++|++|+|+++++||.++|+||++|
T Consensus 63 l~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~iGtvlev~dd~~aiV~-s~Gr~~~V~Vsp~Vd~e~LkPG~rV 141 (251)
T 3m9b_A 63 IDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSGYGVLLATHDDDTVDVF-TSGRKMRLTCSPNIDAASLKKGQTV 141 (251)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECSSSCEEEE-CSSSCCEECBCTTSCTTTSCSSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEcCCCEEEEE-eCCceEEEEeCCCCCHHHCCCCCEE
Confidence 344445556667788999999999999999999999999999999999999998 5889999999999999999999999
Q ss_pred EecCCcceeeeccCCCC
Q psy7782 204 LLNHKVHAVVGVLSDDT 220 (225)
Q Consensus 204 ~ln~~~~~Iv~vLp~~~ 220 (225)
+||+ +|+||++||++.
T Consensus 142 aLNe-SlaVVevLp~E~ 157 (251)
T 3m9b_A 142 RLNE-ALTVVEAGTFEA 157 (251)
T ss_dssp EECT-TCCBCCCCCCCC
T ss_pred EeCC-ccEEEEecCCCC
Confidence 9986 999999999986
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.77 E-value=1.5e-20 Score=180.75 Aligned_cols=91 Identities=29% Similarity=0.546 Sum_probs=78.2
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeecc--------CCCC-CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRG--------AGSN-SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~--------~~~~-~~~ 68 (225)
.||+++|++|++.+.+|+++|+.|.++|+.+++|+|||||||||||++|+ .+++.+|+.+. +|++ +.+
T Consensus 480 ggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~v 559 (806)
T 3cf2_A 480 GGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANV 559 (806)
T ss_dssp CSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHH
T ss_pred CCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHH
Confidence 38999999999999999999999999999999999999999999999997 66778888664 4455 667
Q ss_pred cchhhhhhcCCCCCC-----cccccccc
Q psy7782 69 KDDKDKKKKYEPPIP-----TRVGKKKR 91 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii-----d~igk~r~ 91 (225)
+++|+.|++++|||| |+++.+|.
T Consensus 560 r~lF~~Ar~~~P~IifiDEiDsl~~~R~ 587 (806)
T 3cf2_A 560 REIFDKARQAAPCVLFFDELDSIAKARG 587 (806)
T ss_dssp HHHHHHHHTTCSEEEECSCGGGCC----
T ss_pred HHHHHHHHHcCCceeechhhhHHhhccC
Confidence 999999999999997 77777765
No 12
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.2e-17 Score=150.90 Aligned_cols=115 Identities=30% Similarity=0.514 Sum_probs=104.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhHHHHHHHHhhhcCCCceeeEEEEEecCCeEEEEccCCCeEEEee
Q psy7782 109 TKCRLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKNEEERSRVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSI 188 (225)
Q Consensus 109 ~~c~lr~~~le~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ev~~l~~~p~~vg~v~e~~d~~~~iV~~~~g~~~~v~v 188 (225)
..+..++.+++++.++|.++.++++. +.+.+++++..+++|+++++++|+.||+|+|.+|++++||++++|++|+|++
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~l~~--~~~~~~~e~~~~~ee~~~l~~~~~~vg~~~e~~d~~~~iv~~~~~~~~~v~~ 122 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDYIKD--EQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQNTGIVSSTTGMSYVVRI 122 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTCSCEEEEEEEEEEETTEEEEEETTSCEEEECB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCCCceeeEEEEEccCCeeEEecCCCCEEEEec
Confidence 46777888999999999999887655 4457889999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCCCCCCCeEEecCCcceeeeccCCCCCCCCC
Q psy7782 189 LSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVT 225 (225)
Q Consensus 189 ~~~vd~~~L~pG~~V~ln~~~~~Iv~vLp~~~D~~v~ 225 (225)
.+.+|++.|+||++|+||.+++.|+.+||.++||.|+
T Consensus 123 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~d~~v~ 159 (428)
T 4b4t_K 123 LSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSIS 159 (428)
T ss_dssp CSSSCTTTCCTTCEEEECSSSCCEEEEECSCCCCSSC
T ss_pred cccccHhhCCCCceeeeecchhhHHhhcCcccCcchh
Confidence 9999999999999999999999999999999999874
No 13
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=8e-18 Score=150.51 Aligned_cols=120 Identities=17% Similarity=0.201 Sum_probs=94.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHH----HHHHHhhhchhhhhHHHHHHHHhhhcCCCceeeEEEEEecCCeEEEEccCC
Q psy7782 106 TPHTKCRLKLLKLERIKDYLLMEEE----FIRNQERLKPQEEKNEEERSRVDDLRGTPMSVGTLEEIIDDNHAIVSTSVG 181 (225)
Q Consensus 106 ~p~~~c~lr~~~le~~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~ev~~l~~~p~~vg~v~e~~d~~~~iV~~~~g 181 (225)
.+..++.++.++.+++.++.....+ ..+++.+.+.++++++.+++|++.|+++|+.||+|++.+|++++||++++|
T Consensus 12 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~~~~~~v~~~~~~~~~~~~iv~~~~~ 91 (405)
T 4b4t_J 12 LETHESGIKPYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIKIVSDKKVLVKVQPE 91 (405)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECTTSCEEEEESSS
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEecCCeEEEEeCCC
Confidence 3445677777777776666443333 334455556788888899999999999999999999999999999999999
Q ss_pred CeEEEeecCCCCcCCCCCCCeEEecCCcceeeeccCCCCCCCCC
Q psy7782 182 SEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVT 225 (225)
Q Consensus 182 ~~~~v~v~~~vd~~~L~pG~~V~ln~~~~~Iv~vLp~~~D~~v~ 225 (225)
++|+|++.+.+++++|+||++|+||.++|+|+++||+++||+|+
T Consensus 92 ~~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~~~~~~ 135 (405)
T 4b4t_J 92 GKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVS 135 (405)
T ss_dssp CEEEECCCTTSCTTTCCSSCEEEEETTTCSCCEECCCCCSCCTT
T ss_pred CEEEEecccccCHhhCCCcceeeeecccceeeeecCcccCchhh
Confidence 99999999999999999999999999999999999999999984
No 14
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.74 E-value=2.8e-19 Score=172.00 Aligned_cols=90 Identities=37% Similarity=0.706 Sum_probs=80.0
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC--------C-CCcc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS--------N-SDKK 69 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~--------~-~~~~ 69 (225)
|+++++++|++.+.+||++|+.|..+|+.+|+|||||||||||||++|+ .++|.+|+.++..+ + ..++
T Consensus 208 Gl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese~~lr 287 (806)
T 3cf2_A 208 GCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLR 287 (806)
T ss_dssp SCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHHHHHH
Confidence 8999999999999999999999999999999999999999999999997 56778898776544 3 4568
Q ss_pred chhhhhhcCCCCCC-----cccccccc
Q psy7782 70 DDKDKKKKYEPPIP-----TRVGKKKR 91 (225)
Q Consensus 70 ~~f~~a~~~~p~ii-----d~igk~r~ 91 (225)
++|+.|+.++|||| |+++.+|.
T Consensus 288 ~lF~~A~~~~PsIIfIDEiDal~~~r~ 314 (806)
T 3cf2_A 288 KAFEEAEKNAPAIIFIDELDAIAPKRE 314 (806)
T ss_dssp HHHHHHTTSCSEEEEEESGGGTCCTTT
T ss_pred HHHHHHHHcCCeEEEEehhcccccccC
Confidence 99999999999997 77777664
No 15
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.65 E-value=6.7e-16 Score=139.66 Aligned_cols=99 Identities=19% Similarity=0.394 Sum_probs=88.8
Q ss_pred HHHHHHHHHhhhchhhhhHHHHHHHHhhhcCCCceeeEEEEEecCCeEEEEccCCCeEEEeecCCCCcCCCCCCCeEEec
Q psy7782 127 MEEEFIRNQERLKPQEEKNEEERSRVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLN 206 (225)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~~ev~~l~~~p~~vg~v~e~~d~~~~iV~~~~g~~~~v~v~~~vd~~~L~pG~~V~ln 206 (225)
++.+.......++.++++..+.+++++.|+++|+.||++++.+|++++||++++|++|+|++.+.++.+.|+||++|+||
T Consensus 70 ~e~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~vg~~~~~~~~~~~iv~~~~g~~~~v~~~~~~~~~~l~~g~~v~~~ 149 (437)
T 4b4t_L 70 YDDQLKQRRQNIRDLEKLYDKTENDIKALQSIGQLIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLD 149 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEECSSSSCEEEEETTSCEEEECBCSSSCTTSCCTTCEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeheeeecCCcEEEEECCCCEEEEecccccCHhhcCCCceeeEc
Confidence 34444444445566777888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeeccCCCCCCCCC
Q psy7782 207 HKVHAVVGVLSDDTDPMVT 225 (225)
Q Consensus 207 ~~~~~Iv~vLp~~~D~~v~ 225 (225)
.++++|+++||.++||+|+
T Consensus 150 ~~~~~~~~~l~~~~d~~~~ 168 (437)
T 4b4t_L 150 ITTLTIMRILPRETDPLVY 168 (437)
T ss_dssp SSSCSEEEECCCCSCCCCS
T ss_pred ccchhHHHhcCcccCchhh
Confidence 9999999999999999874
No 16
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.57 E-value=7.3e-15 Score=132.77 Aligned_cols=99 Identities=24% Similarity=0.365 Sum_probs=86.5
Q ss_pred HHHHHHHHHhhhchhhhhHHHHHHHHhhhcCCCceeeEEEEEecCC--------------------------eEEEEccC
Q psy7782 127 MEEEFIRNQERLKPQEEKNEEERSRVDDLRGTPMSVGTLEEIIDDN--------------------------HAIVSTSV 180 (225)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~l~~ev~~l~~~p~~vg~v~e~~d~~--------------------------~~iV~~~~ 180 (225)
++.+..+...++..+++++++.+++++.++++|+.||+++|++|.+ .++|++++
T Consensus 44 l~~e~~r~~~e~~~~~~~~~~~~~~i~~~~~~p~~v~~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 123 (434)
T 4b4t_M 44 FRSELQRLSHENNVMLEKIKDNKEKIKNNRQLPYLVANVVEVMDMNEIEDKENSESTTQGGNVNLDNTAVGKAAVVKTSS 123 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCEEEECCC---------------------------CCSEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhhhhhhccchhhhhccchhhhhhhhhhhhhcccCceEEEEcCC
Confidence 3445556666777888899999999999999999999999998643 68999999
Q ss_pred CCeEEEeecCCCCcCCCCCCCeEEecCCcceeeeccCCCCCCCCC
Q psy7782 181 GSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVT 225 (225)
Q Consensus 181 g~~~~v~v~~~vd~~~L~pG~~V~ln~~~~~Iv~vLp~~~D~~v~ 225 (225)
|++|+|++.+++|++.|+||++|+||.++++|+++||+++||+|+
T Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~d~~~~ 168 (434)
T 4b4t_M 124 RQTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVK 168 (434)
T ss_dssp SCEEEEECCSSSCTTTSCSSEEEEECSSSCSEEEEEEESSSCSCS
T ss_pred CCeEEEecccccCHhHCCCCCEEeEcCcchhhheecCcccCchhh
Confidence 999999999999999999999999999999999999999999984
No 17
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.48 E-value=7.9e-15 Score=126.28 Aligned_cols=83 Identities=29% Similarity=0.546 Sum_probs=73.4
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC--------C-CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS--------N-SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~--------~-~~~ 68 (225)
+|++++++.|.+.+.+|+.+|+.|..+|+.+++|+|||||||||||++|+ ..++.+|+.++.++ . ..+
T Consensus 18 ~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~ 97 (301)
T 3cf0_A 18 GGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANV 97 (301)
T ss_dssp CSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHH
T ss_pred CCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHH
Confidence 58999999999999999999999999999999999999999999999997 44568888776433 2 456
Q ss_pred cchhhhhhcCCCCCC
Q psy7782 69 KDDKDKKKKYEPPIP 83 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii 83 (225)
+.+|..|+..+|||+
T Consensus 98 ~~~f~~a~~~~p~il 112 (301)
T 3cf0_A 98 REIFDKARQAAPCVL 112 (301)
T ss_dssp HHHHHHHHHTCSEEE
T ss_pred HHHHHHHHhcCCeEE
Confidence 899999999999987
No 18
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.45 E-value=2.7e-14 Score=130.54 Aligned_cols=90 Identities=31% Similarity=0.537 Sum_probs=75.3
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccc---ccCCceeeccCCC--------C-CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSP---ALGYHYYCRGAGS--------N-SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~---~~~~~~~~~~~~~--------~-~~~ 68 (225)
+|++++++++++.+.+ +.+++.|..+|...++|+||+||||||||++|++ .++.+|+.++.++ + ..+
T Consensus 19 ~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~ 97 (476)
T 2ce7_A 19 GGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARV 97 (476)
T ss_dssp CSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHH
T ss_pred CCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHH
Confidence 5899999999999987 8899999999999999999999999999999984 4568888776554 2 456
Q ss_pred cchhhhhhcCCCCCC-----cccccccc
Q psy7782 69 KDDKDKKKKYEPPIP-----TRVGKKKR 91 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii-----d~igk~r~ 91 (225)
+.+|..|+..+|||+ |.++.++.
T Consensus 98 r~lf~~A~~~~p~ILfIDEid~l~~~r~ 125 (476)
T 2ce7_A 98 RDLFAQAKAHAPCIVFIDEIDAVGRHRG 125 (476)
T ss_dssp HHHHHHHHHTCSEEEEEETGGGTCCC--
T ss_pred HHHHHHHHhcCCCEEEEechhhhhhhcc
Confidence 899999999999997 55665553
No 19
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.45 E-value=9e-15 Score=127.35 Aligned_cols=82 Identities=24% Similarity=0.466 Sum_probs=69.8
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccc---c-CCceeeccCCC--------C-CC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPA---L-GYHYYCRGAGS--------N-SD 67 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~---~-~~~~~~~~~~~--------~-~~ 67 (225)
.|++++++.|.+.+.+|+++|+.|.. +..+++|+|||||||||||++|++. + +.+|+.++.++ . ..
T Consensus 15 ~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~ 93 (322)
T 1xwi_A 15 AGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKL 93 (322)
T ss_dssp CSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHH
Confidence 58999999999999999999999985 3678899999999999999999733 3 67888777655 2 33
Q ss_pred ccchhhhhhcCCCCCC
Q psy7782 68 KKDDKDKKKKYEPPIP 83 (225)
Q Consensus 68 ~~~~f~~a~~~~p~ii 83 (225)
++.+|..|+..+||||
T Consensus 94 ~~~lf~~a~~~~~~vl 109 (322)
T 1xwi_A 94 VKNLFQLARENKPSII 109 (322)
T ss_dssp HHHHHHHHHHTSSEEE
T ss_pred HHHHHHHHHhcCCcEE
Confidence 5799999999999997
No 20
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.45 E-value=1e-14 Score=124.33 Aligned_cols=83 Identities=24% Similarity=0.443 Sum_probs=71.4
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccc---cCCceeeccCCCC---------CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPA---LGYHYYCRGAGSN---------SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~---~~~~~~~~~~~~~---------~~~ 68 (225)
.|+++++++|++.+.+|+.+++.|..+++.+++|++||||||||||++++++ .+..++.++..+- ..+
T Consensus 13 ~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i 92 (274)
T 2x8a_A 13 GALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAV 92 (274)
T ss_dssp CHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHH
Confidence 3899999999999999999999999999999999999999999999999854 4466777765541 235
Q ss_pred cchhhhhhcCCCCCC
Q psy7782 69 KDDKDKKKKYEPPIP 83 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii 83 (225)
+.+|+.|+...||++
T Consensus 93 ~~vf~~a~~~~p~i~ 107 (274)
T 2x8a_A 93 RQVFQRAKNSAPCVI 107 (274)
T ss_dssp HHHHHHHHHTCSEEE
T ss_pred HHHHHHHHhcCCCeE
Confidence 689999999999986
No 21
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.37 E-value=4.4e-13 Score=121.54 Aligned_cols=69 Identities=22% Similarity=0.273 Sum_probs=64.5
Q ss_pred CCCceeeEEEEEe----------------------------------cCCeEEEEccCCCeEEEeecCCCCcCCCCCCCe
Q psy7782 157 GTPMSVGTLEEII----------------------------------DDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCS 202 (225)
Q Consensus 157 ~~p~~vg~v~e~~----------------------------------d~~~~iV~~~~g~~~~v~v~~~vd~~~L~pG~~ 202 (225)
..|+.|+++.+++ |++++||++++|++|+|+++++||+++|+||++
T Consensus 94 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~~~~~~~~~~l~~g~~ 173 (467)
T 4b4t_H 94 EHPLQVARCTKIIKGNGESDETTTDNNNSGNSNSNSNQQSTDADEDDEDAKYVINLKQIAKFVVGLGERVSPTDIEEGMR 173 (467)
T ss_dssp -CCSSSEEEEECCCC--------------------------------CCCCCEEEETTSCCBCCCCCTTCCSSSCCTTCE
T ss_pred ccchhHhhhHhHhccccccccccccccccccccccccccCccccccCCCCcEEEEecCCCeEEEecCCcCCHHHCCCCCE
Confidence 6799999999997 356899999999999999999999999999999
Q ss_pred EEecCCcceeeeccCCCCCCCCC
Q psy7782 203 VLLNHKVHAVVGVLSDDTDPMVT 225 (225)
Q Consensus 203 V~ln~~~~~Iv~vLp~~~D~~v~ 225 (225)
|+||+++|+|+.+||.++||+|+
T Consensus 174 v~l~~~~~~i~~~lp~~~d~~v~ 196 (467)
T 4b4t_H 174 VGVDRSKYNIELPLPPRIDPSVT 196 (467)
T ss_dssp ECSCTTSCCCCCSSCSSSCCCCC
T ss_pred EEEccCcceeeecCCCccCCccc
Confidence 99999999999999999999985
No 22
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.36 E-value=3.5e-14 Score=123.30 Aligned_cols=82 Identities=27% Similarity=0.500 Sum_probs=70.6
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC--------C-CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS--------N-SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~--------~-~~~ 68 (225)
+|++++++.|.+.+.+|+.+|+.|.. +..+++|+|||||||||||++|+ ..++.+|+.++.++ . ..+
T Consensus 21 ~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~ 99 (322)
T 3eie_A 21 AGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLV 99 (322)
T ss_dssp CSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHH
T ss_pred cChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHH
Confidence 58999999999999999999999987 55788999999999999999997 44578888776544 1 345
Q ss_pred cchhhhhhcCCCCCC
Q psy7782 69 KDDKDKKKKYEPPIP 83 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii 83 (225)
+.+|..|+..+||||
T Consensus 100 ~~~f~~a~~~~~~vl 114 (322)
T 3eie_A 100 KQLFAMARENKPSII 114 (322)
T ss_dssp HHHHHHHHHTSSEEE
T ss_pred HHHHHHHHhcCCeEE
Confidence 799999999999987
No 23
>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A
Probab=99.34 E-value=1.4e-12 Score=100.29 Aligned_cols=66 Identities=24% Similarity=0.303 Sum_probs=57.8
Q ss_pred hhhcCCCceeeEEEEEecCCeEEEEccCCCeEEEeecCCCCcCCCCCCCeEEecCCcceeeeccCCCC
Q psy7782 153 DDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDT 220 (225)
Q Consensus 153 ~~l~~~p~~vg~v~e~~d~~~~iV~~~~g~~~~v~v~~~vd~~~L~pG~~V~ln~~~~~Iv~vLp~~~ 220 (225)
++|.+||+.+|+|+...+++.+.| .++|++|+|.++|.||.+.|+||++|.||+ +++||+.++++.
T Consensus 1 ~~L~qPPstygt~l~~~~d~tadV-~t~GRkMrv~vsP~vd~~~L~~Gq~V~LNE-al~VVea~~~~~ 66 (153)
T 2wfw_A 1 DRLGQPPSGYGVLLSVHEDKTVDV-FTSGRKMRLTCSPNIDTDTLALGQTVRLNE-ALTIVEAGTYEQ 66 (153)
T ss_dssp ------CBEEEEEEEECTTSCEEE-EETTEEEEECBCTTCCGGGCCTTCEEEECT-TCCEEEECCCCC
T ss_pred CcccCCCcceEEEEEEcCCCeEEE-EECCcEEEEEeCCCCCHHHCCCCCEEEECC-ceEEEEccCCCC
Confidence 468899999999999999999999 789999999999999999999999999999 999999999864
No 24
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.34 E-value=1.5e-13 Score=116.47 Aligned_cols=86 Identities=44% Similarity=0.686 Sum_probs=73.6
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC------C---CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS------N---SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~------~---~~~ 68 (225)
+|++++++.|.+.+..++.+++.|..+|+.+++++|||||||||||++|+ ..++.+++.+...+ | ...
T Consensus 20 ~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~ 99 (285)
T 3h4m_A 20 GGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLV 99 (285)
T ss_dssp CSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHH
Confidence 58999999999999999999999999999999999999999999999997 44567887776554 1 334
Q ss_pred cchhhhhhcCCCCCC--ccc
Q psy7782 69 KDDKDKKKKYEPPIP--TRV 86 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii--d~i 86 (225)
+.+|..|+...|+|+ |.+
T Consensus 100 ~~~~~~~~~~~~~vl~iDEi 119 (285)
T 3h4m_A 100 KDIFKLAKEKAPSIIFIDEI 119 (285)
T ss_dssp HHHHHHHHHTCSEEEEEETT
T ss_pred HHHHHHHHHcCCeEEEEECH
Confidence 688999999999986 544
No 25
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.30 E-value=3.1e-13 Score=122.54 Aligned_cols=82 Identities=24% Similarity=0.466 Sum_probs=69.2
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccc---c-CCceeeccCCC--------C-CC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPA---L-GYHYYCRGAGS--------N-SD 67 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~---~-~~~~~~~~~~~--------~-~~ 67 (225)
+|++++++.|.+.+.+|+.+|+.|.. +..+++|+|||||||||||++|+++ + +.+|+.++.++ . ..
T Consensus 137 ~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~ 215 (444)
T 2zan_A 137 AGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKL 215 (444)
T ss_dssp CSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCT
T ss_pred cCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHH
Confidence 58999999999999999999999875 3567899999999999999999733 3 67888777655 2 44
Q ss_pred ccchhhhhhcCCCCCC
Q psy7782 68 KKDDKDKKKKYEPPIP 83 (225)
Q Consensus 68 ~~~~f~~a~~~~p~ii 83 (225)
++.+|..|+..+||||
T Consensus 216 ~~~~f~~a~~~~~~vl 231 (444)
T 2zan_A 216 VKNLFQLARENKPSII 231 (444)
T ss_dssp HHHHHHHHHHSCSEEE
T ss_pred HHHHHHHHHHcCCeEE
Confidence 5899999999999987
No 26
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.30 E-value=1e-13 Score=122.24 Aligned_cols=82 Identities=27% Similarity=0.500 Sum_probs=70.2
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC--------C-CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS--------N-SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~--------~-~~~ 68 (225)
+|++++++.|.+.+.+|+.+|+.|.. +..+++|+|||||||||||++|+ ..++.+|+.++.++ . ..+
T Consensus 54 ~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~ 132 (355)
T 2qp9_X 54 AGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLV 132 (355)
T ss_dssp CCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHH
Confidence 58999999999999999999999987 56788999999999999999997 45578888776443 2 345
Q ss_pred cchhhhhhcCCCCCC
Q psy7782 69 KDDKDKKKKYEPPIP 83 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii 83 (225)
+.+|..|+..+||||
T Consensus 133 ~~~f~~a~~~~~~vl 147 (355)
T 2qp9_X 133 KQLFAMARENKPSII 147 (355)
T ss_dssp HHHHHHHHHTSSEEE
T ss_pred HHHHHHHHHcCCeEE
Confidence 789999999999987
No 27
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.30 E-value=2.9e-13 Score=112.96 Aligned_cols=82 Identities=27% Similarity=0.434 Sum_probs=64.6
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCCC---------CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGSN---------SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~~---------~~~ 68 (225)
+|++++++.|.+.+.+ +.+++.|..+|+..++++|||||||||||++|+ ...+.+++.++.++- ...
T Consensus 9 ~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (262)
T 2qz4_A 9 AGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARV 87 (262)
T ss_dssp CSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHH
Confidence 6899999999999988 889999999999999999999999999999997 445678887776551 334
Q ss_pred cchhhhhhcCCCCCC
Q psy7782 69 KDDKDKKKKYEPPIP 83 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii 83 (225)
+.+|..|+..+|+|+
T Consensus 88 ~~~~~~a~~~~~~vl 102 (262)
T 2qz4_A 88 RSLFKEARARAPCIV 102 (262)
T ss_dssp HHHHHHHHHTCSEEE
T ss_pred HHHHHHHHhcCCeEE
Confidence 688999999999986
No 28
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.29 E-value=4.7e-13 Score=112.47 Aligned_cols=85 Identities=36% Similarity=0.568 Sum_probs=70.9
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccc---ccCCceeeccCCC--------C-CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSP---ALGYHYYCRGAGS--------N-SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~---~~~~~~~~~~~~~--------~-~~~ 68 (225)
+|++++++.|.+.+.+ +.+++.|..++...++|+|||||||||||++|++ .++.+++.++.++ + ..+
T Consensus 14 ~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~ 92 (268)
T 2r62_A 14 AGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRV 92 (268)
T ss_dssp SSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSS
T ss_pred CCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHH
Confidence 5889999999998887 8899999999999999999999999999999973 3456777665443 3 456
Q ss_pred cchhhhhhcCCCCCC--ccc
Q psy7782 69 KDDKDKKKKYEPPIP--TRV 86 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii--d~i 86 (225)
+.+|+.|...+|+|+ |.+
T Consensus 93 ~~~~~~a~~~~~~vl~iDEi 112 (268)
T 2r62_A 93 RDLFETAKKQAPSIIFIDEI 112 (268)
T ss_dssp STTHHHHHHSCSCEEEESCG
T ss_pred HHHHHHHHhcCCeEEEEeCh
Confidence 899999999999986 444
No 29
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.28 E-value=3.8e-13 Score=123.44 Aligned_cols=83 Identities=39% Similarity=0.714 Sum_probs=73.6
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC------C---CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS------N---SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~------~---~~~ 68 (225)
+|++++++.|.+.+.+|+.+|+.|..+|..+++|+|||||||||||++|+ ..++.+|+.++.++ | ...
T Consensus 207 ~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~ 286 (489)
T 3hu3_A 207 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNL 286 (489)
T ss_dssp CSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHH
Confidence 58999999999999999999999999999999999999999999999997 44678888877544 2 345
Q ss_pred cchhhhhhcCCCCCC
Q psy7782 69 KDDKDKKKKYEPPIP 83 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii 83 (225)
+.+|..|...+|||+
T Consensus 287 ~~~f~~A~~~~p~iL 301 (489)
T 3hu3_A 287 RKAFEEAEKNAPAII 301 (489)
T ss_dssp HHHHHHHHHTCSEEE
T ss_pred HHHHHHHHhcCCcEE
Confidence 789999999999987
No 30
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.27 E-value=4.9e-13 Score=111.92 Aligned_cols=82 Identities=34% Similarity=0.515 Sum_probs=64.5
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccc---cCCceeeccCCC--------C-CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPA---LGYHYYCRGAGS--------N-SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~---~~~~~~~~~~~~--------~-~~~ 68 (225)
+|++++++.+.+.+.+ +.+++.|..++...++|+|||||||||||++|+++ .+.+++.++..+ + ..+
T Consensus 15 ~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~ 93 (257)
T 1lv7_A 15 AGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRV 93 (257)
T ss_dssp CSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHH
T ss_pred cCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHH
Confidence 5899999999998877 88899999999999999999999999999999744 456788776555 2 234
Q ss_pred cchhhhhhcCCCCCC
Q psy7782 69 KDDKDKKKKYEPPIP 83 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii 83 (225)
+.+|+.|+..+||++
T Consensus 94 ~~~~~~a~~~~~~il 108 (257)
T 1lv7_A 94 RDMFEQAKKAAPCII 108 (257)
T ss_dssp HHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHcCCeee
Confidence 689999999999886
No 31
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.22 E-value=1.7e-12 Score=119.28 Aligned_cols=89 Identities=33% Similarity=0.531 Sum_probs=73.8
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccc---cCCceeeccCCC--------C-CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPA---LGYHYYCRGAGS--------N-SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~---~~~~~~~~~~~~--------~-~~~ 68 (225)
+|++++++++++.+.+ +.++..|..++...++|+|||||||||||++|+++ ++.+|+.++..+ + ..+
T Consensus 34 ~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v 112 (499)
T 2dhr_A 34 AGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARV 112 (499)
T ss_dssp CSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHH
T ss_pred CCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHH
Confidence 5899999999999887 88999999999999999999999999999999844 457788776554 2 345
Q ss_pred cchhhhhhcCCCCCC-----ccccccc
Q psy7782 69 KDDKDKKKKYEPPIP-----TRVGKKK 90 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii-----d~igk~r 90 (225)
+.+|+.|+..+|||+ |.++.++
T Consensus 113 ~~lfq~a~~~~p~il~IDEId~l~~~r 139 (499)
T 2dhr_A 113 RDLFETAKRHAPCIVFIDEIDAVGRKR 139 (499)
T ss_dssp HHHTTTSSSSSSCEEEEECGGGTCCCS
T ss_pred HHHHHHHHhcCCCEEEEehHHHHHHhh
Confidence 789999999999986 5556554
No 32
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.21 E-value=1.5e-12 Score=111.04 Aligned_cols=82 Identities=30% Similarity=0.463 Sum_probs=69.2
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCCC---------CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGSN---------SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~~---------~~~ 68 (225)
+|++++++.|.+.+.+|+.+|+.|..++ .+++++|||||||||||++|+ ..++.+|+.++.++- ...
T Consensus 24 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~ 102 (297)
T 3b9p_A 24 AGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLV 102 (297)
T ss_dssp CCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHH
T ss_pred CChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHH
Confidence 5899999999999999999999988765 568999999999999999997 445678887776551 234
Q ss_pred cchhhhhhcCCCCCC
Q psy7782 69 KDDKDKKKKYEPPIP 83 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii 83 (225)
+.+|..|+...|+|+
T Consensus 103 ~~~~~~~~~~~~~vl 117 (297)
T 3b9p_A 103 RALFAVARHMQPSII 117 (297)
T ss_dssp HHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHcCCcEE
Confidence 688999999999987
No 33
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.15 E-value=3.6e-12 Score=113.24 Aligned_cols=82 Identities=27% Similarity=0.480 Sum_probs=70.6
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC------C---CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS------N---SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~------~---~~~ 68 (225)
+|++++++.|.+++.+|+.+++.|..++ .+++++|||||||||||++|+ ..++.+|+.++.++ | ..+
T Consensus 118 iG~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~ 196 (389)
T 3vfd_A 118 AGQDLAKQALQEIVILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLV 196 (389)
T ss_dssp CSCHHHHHHHHHHTHHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHH
Confidence 6899999999999999999999988876 567999999999999999997 45678999888766 1 224
Q ss_pred cchhhhhhcCCCCCC
Q psy7782 69 KDDKDKKKKYEPPIP 83 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii 83 (225)
+.+|..|+..+|+|+
T Consensus 197 ~~~~~~a~~~~~~il 211 (389)
T 3vfd_A 197 RALFAVARELQPSII 211 (389)
T ss_dssp HHHHHHHHHSSSEEE
T ss_pred HHHHHHHHhcCCeEE
Confidence 789999999999986
No 34
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.15 E-value=2.7e-12 Score=113.05 Aligned_cols=82 Identities=29% Similarity=0.505 Sum_probs=69.9
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCCC---------CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGSN---------SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~~---------~~~ 68 (225)
+|++++++.|.+.+.+|+.+++.|...+ .+++++|||||||||||++|+ ..++.+|+.++.++- ..+
T Consensus 87 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~ 165 (357)
T 3d8b_A 87 AGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMV 165 (357)
T ss_dssp CSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHH
Confidence 5899999999999999999999988765 678999999999999999997 456788888876651 234
Q ss_pred cchhhhhhcCCCCCC
Q psy7782 69 KDDKDKKKKYEPPIP 83 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii 83 (225)
+.+|..|+..+|+|+
T Consensus 166 ~~~~~~a~~~~~~vl 180 (357)
T 3d8b_A 166 RALFAVARCQQPAVI 180 (357)
T ss_dssp HHHHHHHHHTCSEEE
T ss_pred HHHHHHHHhcCCeEE
Confidence 788999999999987
No 35
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.12 E-value=2.3e-12 Score=124.65 Aligned_cols=83 Identities=29% Similarity=0.550 Sum_probs=72.1
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccc---ccCCceeeccCCC--------C-CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSP---ALGYHYYCRGAGS--------N-SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~---~~~~~~~~~~~~~--------~-~~~ 68 (225)
.|++++++.|.+.+.+|+.+++.|..+++.+++++|||||||||||++|++ .++.+|+.++.++ . ..+
T Consensus 480 ~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i 559 (806)
T 1ypw_A 480 GGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANV 559 (806)
T ss_dssp SCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHH
T ss_pred ccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHH
Confidence 478899999999999999999999999999999999999999999999974 4457777776655 2 335
Q ss_pred cchhhhhhcCCCCCC
Q psy7782 69 KDDKDKKKKYEPPIP 83 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii 83 (225)
+.+|+.|+..+|||+
T Consensus 560 ~~~f~~a~~~~p~vl 574 (806)
T 1ypw_A 560 REIFDKARQAAPCVL 574 (806)
T ss_dssp HHHHHHHHHHCSBCC
T ss_pred HHHHHHHHhcCCeEE
Confidence 789999999999987
No 36
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.04 E-value=8.9e-12 Score=120.59 Aligned_cols=83 Identities=39% Similarity=0.719 Sum_probs=71.8
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccc---cCCceeeccCCC------C---CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPA---LGYHYYCRGAGS------N---SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~---~~~~~~~~~~~~------~---~~~ 68 (225)
+|++++++.|.+.+.+|+.+|+.|..+++.+++++|||||||||||++|+++ .+.+++.++..+ | ..+
T Consensus 207 ~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~~~l 286 (806)
T 1ypw_A 207 GGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNL 286 (806)
T ss_dssp CSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHHHHH
Confidence 5889999999999999999999999999999999999999999999999844 457777766433 2 345
Q ss_pred cchhhhhhcCCCCCC
Q psy7782 69 KDDKDKKKKYEPPIP 83 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii 83 (225)
+.+|+.|....||++
T Consensus 287 ~~vf~~a~~~~p~il 301 (806)
T 1ypw_A 287 RKAFEEAEKNAPAII 301 (806)
T ss_dssp HHHHHHHHHHCSEEE
T ss_pred HHHHHHHHhcCCcEE
Confidence 789999999999986
No 37
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.02 E-value=3.8e-11 Score=100.14 Aligned_cols=82 Identities=32% Similarity=0.504 Sum_probs=66.1
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccccc---CCceeeccCCC--------C-CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPAL---GYHYYCRGAGS--------N-SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~---~~~~~~~~~~~--------~-~~~ 68 (225)
+|+++++.++++.+.. +..+..+..+++..++|++|+||||||||+++++++ +.+++.++..+ + ..+
T Consensus 19 ~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i 97 (254)
T 1ixz_A 19 AGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARV 97 (254)
T ss_dssp CSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHH
T ss_pred CCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHH
Confidence 5889999999998877 778899999999999999999999999999998443 45666554322 1 334
Q ss_pred cchhhhhhcCCCCCC
Q psy7782 69 KDDKDKKKKYEPPIP 83 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii 83 (225)
+.+|+.+....|+++
T Consensus 98 ~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 98 RDLFETAKRHAPCIV 112 (254)
T ss_dssp HHHHHHHTTSSSEEE
T ss_pred HHHHHHHHhcCCeEE
Confidence 688999988889975
No 38
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.01 E-value=2.9e-11 Score=109.75 Aligned_cols=83 Identities=20% Similarity=0.185 Sum_probs=62.8
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccc---ccC--CceeeccCCC------C--CC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSP---ALG--YHYYCRGAGS------N--SD 67 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~---~~~--~~~~~~~~~~------~--~~ 67 (225)
+|++++++.+.+++.+ ...|..+++|+|||||||||||++|++ .++ .+|+.++.++ | ..
T Consensus 40 iG~~~~~~~l~~~~~~--------~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~ 111 (456)
T 2c9o_A 40 VGQENAREACGVIVEL--------IKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV 111 (456)
T ss_dssp ESCHHHHHHHHHHHHH--------HHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH
T ss_pred cCHHHHHHHHHHHHHH--------HHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH
Confidence 5889999998887754 234667889999999999999999973 345 7888777665 2 23
Q ss_pred ccchhhhh---hcCCCCCC-----cccccccc
Q psy7782 68 KKDDKDKK---KKYEPPIP-----TRVGKKKR 91 (225)
Q Consensus 68 ~~~~f~~a---~~~~p~ii-----d~igk~r~ 91 (225)
++++|..| +..+|||+ |.++.+|.
T Consensus 112 ~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~ 143 (456)
T 2c9o_A 112 LMENFRRAIGLRIKETKEVYEGEVTELTPCET 143 (456)
T ss_dssp HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--
T ss_pred HHHHHHHHHhhhhcCCcEEEEechhhcccccC
Confidence 57899999 88999997 66665554
No 39
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.92 E-value=1.6e-10 Score=97.78 Aligned_cols=82 Identities=32% Similarity=0.504 Sum_probs=65.9
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccccc---CCceeeccCCC--------C-CCc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPAL---GYHYYCRGAGS--------N-SDK 68 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~---~~~~~~~~~~~--------~-~~~ 68 (225)
+|++++++++++.+.. +..+..+..+++..++|++|+||||||||+++++++ +..++.++..+ + ..+
T Consensus 43 ~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i 121 (278)
T 1iy2_A 43 AGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARV 121 (278)
T ss_dssp SSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHH
T ss_pred CChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHH
Confidence 5889999999998877 778899999999999999999999999999998443 35666554322 1 334
Q ss_pred cchhhhhhcCCCCCC
Q psy7782 69 KDDKDKKKKYEPPIP 83 (225)
Q Consensus 69 ~~~f~~a~~~~p~ii 83 (225)
+.+|+.+....|+++
T Consensus 122 ~~~~~~~~~~~~~i~ 136 (278)
T 1iy2_A 122 RDLFETAKRHAPCIV 136 (278)
T ss_dssp HHHHHHHHTSCSEEE
T ss_pred HHHHHHHHhcCCcEE
Confidence 688999988889976
No 40
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.90 E-value=9.8e-11 Score=100.38 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=45.8
Q ss_pred cCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC------C---CCccchhhhh----hcCCCCCC
Q psy7782 27 MGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS------N---SDKKDDKDKK----KKYEPPIP 83 (225)
Q Consensus 27 ~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~------~---~~~~~~f~~a----~~~~p~ii 83 (225)
.+..+|+|+|||||||||||++|+ ..+|.+|+.++.++ | ..++++|..| +..+|||+
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl 103 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCL 103 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCE
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEE
Confidence 356789999999999999999997 44578998887554 2 3457889888 68899997
No 41
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.60 E-value=6.4e-09 Score=94.11 Aligned_cols=80 Identities=18% Similarity=0.170 Sum_probs=60.8
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCC-CCceeEEEcCCCCCCCcccc---cccCCceeeccCCC-------C----
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIK-PPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS-------N---- 65 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~-~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~-------~---- 65 (225)
+|++++|+.|...+..+++.+..+..++.. +++++||+||||||||++|+ ..++.+|+.+..+. |
T Consensus 18 vGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e 97 (444)
T 1g41_A 18 IGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVD 97 (444)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTH
T ss_pred CCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHH
Confidence 699999999999998887776666555433 57899999999999999997 45678888665422 2
Q ss_pred CCccchhhhhhcCCC
Q psy7782 66 SDKKDDKDKKKKYEP 80 (225)
Q Consensus 66 ~~~~~~f~~a~~~~p 80 (225)
..++++|..|+...|
T Consensus 98 ~~lr~lf~~a~~~~~ 112 (444)
T 1g41_A 98 SIIRDLTDSAMKLVR 112 (444)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcch
Confidence 334788888876554
No 42
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.55 E-value=1.3e-08 Score=86.73 Aligned_cols=79 Identities=19% Similarity=0.201 Sum_probs=56.7
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCC---CceeEEEcCCCCCCCccccccc----------CCceeeccCCC---
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKP---PKGVILYGPPGTGKTLPFSPAL----------GYHYYCRGAGS--- 64 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~---~~giLl~GppGtGKT~la~~~~----------~~~~~~~~~~~--- 64 (225)
+|++++++.|.+.+..+. .+..+.++|+.. ..++|||||||||||++|++++ ..+++.++..+
T Consensus 34 ~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~ 112 (309)
T 3syl_A 34 IGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVG 112 (309)
T ss_dssp SSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCC
T ss_pred cChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhh
Confidence 699999999999999844 578888888665 3469999999999999996322 23677666544
Q ss_pred ---C---CCccchhhhhhcCCCCCC
Q psy7782 65 ---N---SDKKDDKDKKKKYEPPIP 83 (225)
Q Consensus 65 ---~---~~~~~~f~~a~~~~p~ii 83 (225)
| ...+.+|..+ .++|+
T Consensus 113 ~~~g~~~~~~~~~~~~~---~~~vl 134 (309)
T 3syl_A 113 QYIGHTAPKTKEVLKRA---MGGVL 134 (309)
T ss_dssp SSTTCHHHHHHHHHHHH---TTSEE
T ss_pred hcccccHHHHHHHHHhc---CCCEE
Confidence 1 1224666665 46665
No 43
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.50 E-value=3.9e-09 Score=92.65 Aligned_cols=87 Identities=17% Similarity=0.159 Sum_probs=55.0
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHH-cC-CCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC-------C---
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEE-MG-IKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS-------N--- 65 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~-~g-~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~-------~--- 65 (225)
+|++++++.|...+...+........ .+ ..++.++||+||||||||++|+ ..++.+|+.++.++ |
T Consensus 18 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~ 97 (363)
T 3hws_A 18 IGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDV 97 (363)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccH
Confidence 58889999888888643221111000 11 1267899999999999999997 44578888776544 1
Q ss_pred -CCccchhhhh----hcCCCCCC--cccc
Q psy7782 66 -SDKKDDKDKK----KKYEPPIP--TRVG 87 (225)
Q Consensus 66 -~~~~~~f~~a----~~~~p~ii--d~ig 87 (225)
...+.+|..+ ....|||+ |.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~vl~lDEid 126 (363)
T 3hws_A 98 ENIIQKLLQKCDYDVQKAQRGIVYIDQID 126 (363)
T ss_dssp THHHHHHHHHTTTCHHHHHHCEEEEECHH
T ss_pred HHHHHHHHHHhhhhHHhcCCcEEEEeChh
Confidence 1224555554 44567776 5543
No 44
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.44 E-value=1.4e-08 Score=104.27 Aligned_cols=82 Identities=18% Similarity=0.148 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHHHHcccCC----------hHHHHH------cCCC----------CCce--eEEEcCCCCCCCccccccc
Q psy7782 2 SLDVQIQEIKESVELPLTH----------PEYYEE------MGIK----------PPKG--VILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~----------~~~~~~------~g~~----------~~~g--iLl~GppGtGKT~la~~~~ 53 (225)
|++++|+.+.+.+.||+.+ ++.|+. .|+. +|+| +|+|||||||||+||.+.+
T Consensus 1024 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT~la~~~~ 1103 (1706)
T 3cmw_A 1024 AIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1103 (1706)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChHHHHHHHH
Confidence 7889999999999999944 667766 3433 5566 9999999999999996322
Q ss_pred ------CCc--eeeccC------------------CC----C-CCccchhhhhhcCCCCCC
Q psy7782 54 ------GYH--YYCRGA------------------GS----N-SDKKDDKDKKKKYEPPIP 83 (225)
Q Consensus 54 ------~~~--~~~~~~------------------~~----~-~~~~~~f~~a~~~~p~ii 83 (225)
|-+ |++... ++ + ..++.+|.+||+.+||++
T Consensus 1104 ~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i 1164 (1706)
T 3cmw_A 1104 AAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVI 1164 (1706)
T ss_dssp HHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEE
T ss_pred HHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEE
Confidence 222 333221 11 2 345678889999999997
No 45
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.41 E-value=2.4e-08 Score=83.89 Aligned_cols=62 Identities=19% Similarity=0.205 Sum_probs=45.7
Q ss_pred HHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC---C-------CCccchhhhhhcCCCCCC--ccc
Q psy7782 25 EEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS---N-------SDKKDDKDKKKKYEPPIP--TRV 86 (225)
Q Consensus 25 ~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~---~-------~~~~~~f~~a~~~~p~ii--d~i 86 (225)
...+..++.++|||||||||||++|+ ...+.+|+.++.++ | ..++.+|..|....|+++ |.+
T Consensus 57 ~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi 133 (272)
T 1d2n_A 57 KNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDI 133 (272)
T ss_dssp HHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTSSEEEEEECCH
T ss_pred hccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHHHHHHHHHHHhcCCcEEEEECh
Confidence 33445678899999999999999997 34568888776554 1 234678888887778876 554
No 46
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.33 E-value=1.1e-07 Score=87.58 Aligned_cols=64 Identities=23% Similarity=0.368 Sum_probs=45.8
Q ss_pred CChHHHHHHHHHHHHccc-CChHHHHHcCC---CCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC
Q psy7782 1 MSLDVQIQEIKESVELPL-THPEYYEEMGI---KPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS 64 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l-~~~~~~~~~g~---~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~ 64 (225)
+|.+++++.|.+++.... ..+..|...|. .+++++||+||||||||++|+ ..+|.+++.++.++
T Consensus 42 iG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~ 112 (516)
T 1sxj_A 42 CGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASD 112 (516)
T ss_dssp CSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTS
T ss_pred cCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCC
Confidence 578888888888886511 11222333333 256899999999999999997 44578899888776
No 47
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.29 E-value=7.8e-08 Score=81.45 Aligned_cols=64 Identities=16% Similarity=0.174 Sum_probs=43.3
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHc-CCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEM-GIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS 64 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~-g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~ 64 (225)
+|.+++++.+...+..++..+.....+ +-..+.++|||||||||||++|+ ...+.+++.++.++
T Consensus 18 ~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~ 85 (310)
T 1ofh_A 18 IGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK 85 (310)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchh
Confidence 588899999988886643322211111 01356899999999999999997 34467777665543
No 48
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.22 E-value=3.6e-07 Score=80.34 Aligned_cols=63 Identities=22% Similarity=0.232 Sum_probs=44.0
Q ss_pred CChHHHHHHHHHHHHcccCChHH------------------HHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceee
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEY------------------YEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYC 59 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~------------------~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~ 59 (225)
+|++++++.|...+..++..... +.. ...++.++||+||||||||++|+ ..++.+|+.
T Consensus 24 iGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~-~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~ 102 (376)
T 1um8_A 24 IGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEE-VELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAI 102 (376)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHH-TTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccc-cccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 68999999999888543322221 111 12456789999999999999997 445678887
Q ss_pred ccCCC
Q psy7782 60 RGAGS 64 (225)
Q Consensus 60 ~~~~~ 64 (225)
++.+.
T Consensus 103 ~~~~~ 107 (376)
T 1um8_A 103 SDATS 107 (376)
T ss_dssp EEGGG
T ss_pred ecchh
Confidence 65443
No 49
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.21 E-value=6.8e-07 Score=76.33 Aligned_cols=75 Identities=21% Similarity=0.269 Sum_probs=48.9
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccc---ccCCceeeccCCCCCCccchhhhhhc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSP---ALGYHYYCRGAGSNSDKKDDKDKKKK 77 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~---~~~~~~~~~~~~~~~~~~~~f~~a~~ 77 (225)
+|.+++++.+.+.+... ...+ ..+.++||+||||||||++|++ ..+.+++.++.+......+++.....
T Consensus 15 ig~~~~~~~l~~~l~~~-------~~~~-~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 86 (324)
T 1hqc_A 15 IGQERLKQKLRVYLEAA-------KARK-EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILAN 86 (324)
T ss_dssp CSCHHHHHHHHHHHHHH-------HHHC-SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHHHHHTT
T ss_pred hCHHHHHHHHHHHHHHH-------HccC-CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHHHHHHH
Confidence 57788888888777651 1111 3567999999999999999973 35678877776654334444443333
Q ss_pred --CCCCCC
Q psy7782 78 --YEPPIP 83 (225)
Q Consensus 78 --~~p~ii 83 (225)
..++++
T Consensus 87 ~~~~~~~l 94 (324)
T 1hqc_A 87 SLEEGDIL 94 (324)
T ss_dssp TCCTTCEE
T ss_pred hccCCCEE
Confidence 345543
No 50
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.16 E-value=7.8e-07 Score=85.30 Aligned_cols=70 Identities=20% Similarity=0.214 Sum_probs=48.4
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccc-------------cCCceeeccCCC---
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPA-------------LGYHYYCRGAGS--- 64 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~-------------~~~~~~~~~~~~--- 64 (225)
||.++.++.+.+.+.. ....++|||||||||||++|++. .+.+++.++.+.
T Consensus 183 iG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~ 249 (758)
T 3pxi_A 183 IGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYR 249 (758)
T ss_dssp CCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------
T ss_pred cCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEeccccccc
Confidence 4666666666655433 34568999999999999999622 367777766533
Q ss_pred C---CCccchhhhhhcCCCCCC
Q psy7782 65 N---SDKKDDKDKKKKYEPPIP 83 (225)
Q Consensus 65 ~---~~~~~~f~~a~~~~p~ii 83 (225)
| ..++.+|..+....|+|+
T Consensus 250 G~~e~~l~~~~~~~~~~~~~iL 271 (758)
T 3pxi_A 250 GEFEDRLKKVMDEIRQAGNIIL 271 (758)
T ss_dssp ---CTTHHHHHHHHHTCCCCEE
T ss_pred chHHHHHHHHHHHHHhcCCEEE
Confidence 2 356899999999889886
No 51
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.15 E-value=8.9e-07 Score=80.50 Aligned_cols=70 Identities=20% Similarity=0.214 Sum_probs=46.9
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccc-------------cCCceeeccCCC---
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPA-------------LGYHYYCRGAGS--- 64 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~-------------~~~~~~~~~~~~--- 64 (225)
||-++.++.+.+.+.. ....++||+||||||||++|++. .+.+|+.++.+.
T Consensus 183 iGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~ 249 (468)
T 3pxg_A 183 IGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYR 249 (468)
T ss_dssp CCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------
T ss_pred cCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCcccc
Confidence 4556666655555432 24568999999999999999622 367788777652
Q ss_pred C---CCccchhhhhhcCCCCCC
Q psy7782 65 N---SDKKDDKDKKKKYEPPIP 83 (225)
Q Consensus 65 ~---~~~~~~f~~a~~~~p~ii 83 (225)
| ...+.+|..++...|+|+
T Consensus 250 g~~e~~~~~~~~~~~~~~~~iL 271 (468)
T 3pxg_A 250 GEFEDRLKKVMDEIRQAGNIIL 271 (468)
T ss_dssp ---CTTHHHHHHHHHTCCCCEE
T ss_pred chHHHHHHHHHHHHHhcCCeEE
Confidence 2 345788999988888875
No 52
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.13 E-value=3.4e-07 Score=84.80 Aligned_cols=80 Identities=20% Similarity=0.238 Sum_probs=52.8
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccccc---CCceeeccCCC-------------
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPAL---GYHYYCRGAGS------------- 64 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~---~~~~~~~~~~~------------- 64 (225)
+|++++++.+.+.+...... ..+ +...+||+||||||||++|++++ +.++..++.+.
T Consensus 84 ~G~~~vk~~i~~~~~l~~~~------~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~ 156 (543)
T 3m6a_A 84 HGLEKVKERILEYLAVQKLT------KSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRT 156 (543)
T ss_dssp SSCHHHHHHHHHHHHHHHHS------SSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------------
T ss_pred ccHHHHHHHHHHHHHHHHhc------ccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHH
Confidence 48889999888777652211 111 45689999999999999998443 56777666544
Q ss_pred --C---CCccchhhhhhcCCCCCC-cccc
Q psy7782 65 --N---SDKKDDKDKKKKYEPPIP-TRVG 87 (225)
Q Consensus 65 --~---~~~~~~f~~a~~~~p~ii-d~ig 87 (225)
| ..+...|..|....|.++ |.+.
T Consensus 157 ~ig~~~~~~~~~~~~a~~~~~vl~lDEid 185 (543)
T 3m6a_A 157 YVGAMPGRIIQGMKKAGKLNPVFLLDEID 185 (543)
T ss_dssp -------CHHHHHHTTCSSSEEEEEEESS
T ss_pred HhccCchHHHHHHHHhhccCCEEEEhhhh
Confidence 1 122456778877788443 4443
No 53
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.11 E-value=4.7e-07 Score=82.00 Aligned_cols=56 Identities=23% Similarity=0.343 Sum_probs=40.9
Q ss_pred ceeEEEcCCCCCCCcccc---cccCCceeeccCCC-C-CCccchhhhhhcC----CCCCC--ccccc
Q psy7782 33 KGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS-N-SDKKDDKDKKKKY----EPPIP--TRVGK 88 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~-~-~~~~~~f~~a~~~----~p~ii--d~igk 88 (225)
.++|||||||||||++|+ ..++.+|+.++... | ..++++|..|... .++|+ |.+.+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~ 117 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHR 117 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHHHHHHHHHHHHHHTTCCEEEEEETTTC
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHHHHhhhcCCCcEEEEeChhh
Confidence 689999999999999997 45678888887665 3 5567777776642 45554 55543
No 54
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.10 E-value=7e-07 Score=68.07 Aligned_cols=65 Identities=17% Similarity=0.084 Sum_probs=41.9
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccccCC--ceeeccCCCC--CCccchhhhhh
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPALGY--HYYCRGAGSN--SDKKDDKDKKK 76 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~~~--~~~~~~~~~~--~~~~~~f~~a~ 76 (225)
+|.++.++.+.+.+... . ....++||+||||||||++|++++.. +|+.++.++- ......|+.|.
T Consensus 7 iG~s~~~~~l~~~~~~~-------~----~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 75 (143)
T 3co5_A 7 LGNSAAIQEMNREVEAA-------A----KRTSPVFLTGEAGSPFETVARYFHKNGTPWVSPARVEYLIDMPMELLQKAE 75 (143)
T ss_dssp -CCCHHHHHHHHHHHHH-------H----TCSSCEEEEEETTCCHHHHHGGGCCTTSCEECCSSTTHHHHCHHHHHHHTT
T ss_pred eeCCHHHHHHHHHHHHH-------h----CCCCcEEEECCCCccHHHHHHHHHHhCCCeEEechhhCChHhhhhHHHhCC
Confidence 35556666666666541 1 23468999999999999999855442 6777776652 22345565554
No 55
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.07 E-value=1.5e-06 Score=74.95 Aligned_cols=56 Identities=13% Similarity=0.129 Sum_probs=42.2
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS 64 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~ 64 (225)
+|.+++++.+..++.... . .-.++.++||+||||||||++|+ ...+.+|+.++.+.
T Consensus 32 iG~~~~~~~l~~~l~~~~-------~-~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~ 90 (338)
T 3pfi_A 32 IGQESIKKNLNVFIAAAK-------K-RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPM 90 (338)
T ss_dssp CSCHHHHHHHHHHHHHHH-------H-TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CChHHHHHHHHHHHHHHH-------h-cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchh
Confidence 578888888888876621 1 12456789999999999999997 44578888777655
No 56
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.07 E-value=1.7e-06 Score=65.93 Aligned_cols=71 Identities=14% Similarity=0.107 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccc------cCCceeeccCCCC---CCccchh
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPA------LGYHYYCRGAGSN---SDKKDDK 72 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~------~~~~~~~~~~~~~---~~~~~~f 72 (225)
|-+...+.+.+.+.. . ......+||+||||||||++|+++ .+.+|+ ++.+.- ......|
T Consensus 5 G~s~~~~~~~~~~~~----------~-a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~~~~ 72 (145)
T 3n70_A 5 GRSEWINQYRRRLQQ----------L-SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLNDFI 72 (145)
T ss_dssp CSSHHHHHHHHHHHH----------H-TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHHHHH
T ss_pred eCCHHHHHHHHHHHH----------H-hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhhcHH
Confidence 445555555555543 1 134568999999999999999733 256788 766653 2234555
Q ss_pred hhhhcCCCCCC--cccc
Q psy7782 73 DKKKKYEPPIP--TRVG 87 (225)
Q Consensus 73 ~~a~~~~p~ii--d~ig 87 (225)
..|. .+++ |.++
T Consensus 73 ~~a~---~g~l~ldei~ 86 (145)
T 3n70_A 73 ALAQ---GGTLVLSHPE 86 (145)
T ss_dssp HHHT---TSCEEEECGG
T ss_pred HHcC---CcEEEEcChH
Confidence 5553 3443 6664
No 57
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.04 E-value=1.1e-06 Score=76.40 Aligned_cols=56 Identities=20% Similarity=0.219 Sum_probs=37.0
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccccc---C--CceeeccCCC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPAL---G--YHYYCRGAGS 64 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~---~--~~~~~~~~~~ 64 (225)
+|.+++++.+...... ...+..+++++|||||||||||++|++.+ + .+|+.+....
T Consensus 47 vG~~~~~~~l~~l~~~--------~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 47 VGQLAARRAAGVVLEM--------IREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp ESCHHHHHHHHHHHHH--------HHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred cChHHHHHHHHHHHHH--------HHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 4667777776655543 12244557899999999999999997333 2 3665555433
No 58
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.91 E-value=3e-06 Score=65.76 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=18.1
Q ss_pred CCceeEEEcCCCCCCCcccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~ 50 (225)
.+.++||+||||||||++|+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHH
Confidence 45789999999999999986
No 59
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.88 E-value=4.2e-06 Score=71.70 Aligned_cols=62 Identities=16% Similarity=0.139 Sum_probs=44.2
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc---cccCCceeeccCCCC--CCccchhhh
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGSN--SDKKDDKDK 74 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~~--~~~~~~f~~ 74 (225)
+|.+++++.|.+++.. + ..+..+|++||||||||++|+ ...+.+++.++.++. ..+++.+..
T Consensus 29 vg~~~~~~~l~~~l~~-----------~-~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~~~~i~~~~~~ 95 (324)
T 3u61_B 29 ILPAFDKETFKSITSK-----------G-KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTN 95 (324)
T ss_dssp CCCHHHHHHHHHHHHT-----------T-CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCCHHHHHTHHHH
T ss_pred hCcHHHHHHHHHHHHc-----------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccCHHHHHHHHHH
Confidence 4677888888777762 2 355778999999999999997 445788998887662 333444443
No 60
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.86 E-value=7.7e-06 Score=78.37 Aligned_cols=79 Identities=16% Similarity=0.222 Sum_probs=48.1
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCC----CCceeEEEcCCCCCCCccccccc------CCceeeccCCCC-----
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIK----PPKGVILYGPPGTGKTLPFSPAL------GYHYYCRGAGSN----- 65 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~----~~~giLl~GppGtGKT~la~~~~------~~~~~~~~~~~~----- 65 (225)
+|.+++++.+.+.+... ..|.. +..++||+||||||||++|++++ +.+|+.++.++-
T Consensus 494 iGq~~a~~~l~~~i~~~--------~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~ 565 (758)
T 3pxi_A 494 IGQDEAVVAVAKAVRRA--------RAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHS 565 (758)
T ss_dssp CSCHHHHHHHHHHHHHH--------TTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC
T ss_pred cChHHHHHHHHHHHHHH--------HcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccc
Confidence 47777887777777651 12222 22369999999999999997332 467887776661
Q ss_pred CCccchhhhhhcCCCCCC--cccc
Q psy7782 66 SDKKDDKDKKKKYEPPIP--TRVG 87 (225)
Q Consensus 66 ~~~~~~f~~a~~~~p~ii--d~ig 87 (225)
.+...++...+...++++ |.++
T Consensus 566 ~~~~~l~~~~~~~~~~vl~lDEi~ 589 (758)
T 3pxi_A 566 TSGGQLTEKVRRKPYSVVLLDAIE 589 (758)
T ss_dssp CC---CHHHHHHCSSSEEEEECGG
T ss_pred cccchhhHHHHhCCCeEEEEeCcc
Confidence 112244444455555665 5443
No 61
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.84 E-value=2.2e-06 Score=67.32 Aligned_cols=27 Identities=33% Similarity=0.511 Sum_probs=21.5
Q ss_pred cCCCCCceeEEEcCCCCCCCccccccc
Q psy7782 27 MGIKPPKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 27 ~g~~~~~giLl~GppGtGKT~la~~~~ 53 (225)
+.+....+++|+||||||||+++++++
T Consensus 33 ~~~~~g~~~~l~G~~G~GKTtL~~~i~ 59 (180)
T 3ec2_A 33 FNPEEGKGLTFVGSPGVGKTHLAVATL 59 (180)
T ss_dssp CCGGGCCEEEECCSSSSSHHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHH
Confidence 334456899999999999999997443
No 62
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.80 E-value=4.5e-06 Score=71.76 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=24.6
Q ss_pred ceeEEEcCCCCCCCcccc---cccCCceeeccCC
Q psy7782 33 KGVILYGPPGTGKTLPFS---PALGYHYYCRGAG 63 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~---~~~~~~~~~~~~~ 63 (225)
.++|||||||||||++|+ ...+.+++.++..
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~ 80 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFT 80 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecC
Confidence 699999999999999997 3456677666543
No 63
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.79 E-value=4.4e-06 Score=64.78 Aligned_cols=20 Identities=40% Similarity=0.597 Sum_probs=18.0
Q ss_pred CCceeEEEcCCCCCCCcccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~ 50 (225)
...++||+||||||||++|+
T Consensus 42 ~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHH
Confidence 45789999999999999986
No 64
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.75 E-value=8.3e-06 Score=64.67 Aligned_cols=51 Identities=29% Similarity=0.339 Sum_probs=34.3
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccccc--------CCceeeccCCC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPAL--------GYHYYCRGAGS 64 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~--------~~~~~~~~~~~ 64 (225)
+|.+++++.+.+++.. + ...+++|+||||||||++|++.+ ...++.++.+.
T Consensus 20 ~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~ 78 (226)
T 2chg_A 20 VGQDEVIQRLKGYVER-----------K--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (226)
T ss_dssp CSCHHHHHHHHHHHHT-----------T--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC
T ss_pred cCcHHHHHHHHHHHhC-----------C--CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc
Confidence 4667777777776654 1 22359999999999999996332 24466665544
No 65
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.74 E-value=9.5e-06 Score=68.75 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~ 53 (225)
+|.+.+++.+...+...... . ...-.+...+||+||||||||++|++++
T Consensus 20 ~G~~~~~~~l~~~i~~~~~~---~-~~~~~~~~~~ll~G~~GtGKt~la~~la 68 (311)
T 4fcw_A 20 VGQDEAIRAVADAIRRARAG---L-KDPNRPIGSFLFLGPTGVGKTELAKTLA 68 (311)
T ss_dssp CSCHHHHHHHHHHHHHHHHT---C-SCTTSCSEEEEEESCSSSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcC---C-CCCCCCceEEEEECCCCcCHHHHHHHHH
Confidence 47777777777777552100 0 0011234579999999999999997433
No 66
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.71 E-value=3.6e-06 Score=68.65 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=21.4
Q ss_pred CCCCCceeEEEcCCCCCCCcccccccC
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
+++..+++|||||||||||++|.+++.
T Consensus 54 ~iPkkn~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 54 GTPKKNCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp TCTTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred cCCcccEEEEECCCCCCHHHHHHHHHH
Confidence 355567899999999999999865543
No 67
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.71 E-value=8.2e-06 Score=70.21 Aligned_cols=19 Identities=37% Similarity=0.758 Sum_probs=17.1
Q ss_pred ceeEEEcCCCCCCCccccc
Q psy7782 33 KGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~ 51 (225)
.++|||||||||||++|++
T Consensus 46 ~~vLl~G~~GtGKT~la~~ 64 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRA 64 (350)
T ss_dssp CCEEEECCGGGCTTHHHHH
T ss_pred ceEEEECCCCccHHHHHHH
Confidence 4799999999999999973
No 68
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.67 E-value=1.3e-05 Score=69.80 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=30.5
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~ 51 (225)
+|.++.++.+.+.+...+. + ..+++++|+||||||||++|++
T Consensus 23 ~gr~~~~~~l~~~l~~~~~--------~-~~~~~vll~G~~G~GKT~la~~ 64 (384)
T 2qby_B 23 PFREDILRDAAIAIRYFVK--------N-EVKFSNLFLGLTGTGKTFVSKY 64 (384)
T ss_dssp TTCHHHHHHHHHHHHHHHT--------T-CCCCEEEEEECTTSSHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHc--------C-CCCCcEEEECCCCCCHHHHHHH
Confidence 4667777777776654221 1 3457999999999999999973
No 69
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.64 E-value=2.2e-05 Score=63.33 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=24.8
Q ss_pred CCceeEEEcCCCCCCCccccccc------CCceeeccCCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPAL------GYHYYCRGAGS 64 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~------~~~~~~~~~~~ 64 (225)
...+++|+||||||||++|++.+ +.+++.++..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 46799999999999999996332 35555555544
No 70
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.62 E-value=1.1e-05 Score=78.27 Aligned_cols=53 Identities=23% Similarity=0.201 Sum_probs=36.3
Q ss_pred CCceeEEEcCCCCCCCcccccc-------------cCCceeeccCCC---CC--------CccchhhhhhcC-CCCCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPA-------------LGYHYYCRGAGS---NS--------DKKDDKDKKKKY-EPPIP 83 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~-------------~~~~~~~~~~~~---~~--------~~~~~f~~a~~~-~p~ii 83 (225)
...++||+||||||||++|+.. .+.+++.++.+. |. ..+.+|..+... .|+|+
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL 267 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVIL 267 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEE
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEE
Confidence 4568999999999999998622 277888776655 11 235677777765 67775
No 71
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.61 E-value=1.8e-05 Score=63.35 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=27.7
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~ 51 (225)
+|.+++++.|.+.+.. + ..+..++|+||||||||+++++
T Consensus 26 ~g~~~~~~~l~~~l~~-----------~-~~~~~~ll~G~~G~GKT~l~~~ 64 (250)
T 1njg_A 26 VGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIARL 64 (250)
T ss_dssp CSCHHHHHHHHHHHHH-----------T-CCCSEEEEECSTTSCHHHHHHH
T ss_pred hCcHHHHHHHHHHHHc-----------C-CCCeEEEEECCCCCCHHHHHHH
Confidence 3556666666666543 1 2345899999999999999963
No 72
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.61 E-value=1.4e-05 Score=76.36 Aligned_cols=53 Identities=21% Similarity=0.166 Sum_probs=36.7
Q ss_pred CCceeEEEcCCCCCCCcccccc-------------cCCceeeccCCC--------C---CCccchhhhhhcCCCCCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPA-------------LGYHYYCRGAGS--------N---SDKKDDKDKKKKYEPPIP 83 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~-------------~~~~~~~~~~~~--------~---~~~~~~f~~a~~~~p~ii 83 (225)
...++||+||||||||++|++. .+..++.+..+. | ...+.+|+.++...++|+
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL 282 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSIL 282 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEE
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEE
Confidence 5678999999999999998622 255566655443 1 123567777777778775
No 73
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.61 E-value=1.8e-05 Score=65.89 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=25.7
Q ss_pred CCceeEEEcCCCCCCCccccccc------CCceeeccCCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPAL------GYHYYCRGAGS 64 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~------~~~~~~~~~~~ 64 (225)
...++||+||||||||++|++++ +.+|+.++.+.
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence 34799999999999999997332 35777776544
No 74
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.60 E-value=1.2e-05 Score=69.66 Aligned_cols=24 Identities=38% Similarity=0.447 Sum_probs=20.2
Q ss_pred CCceeEEEcCCCCCCCcccccccC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~ 54 (225)
++..++|+||||||||++|+.+++
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 457899999999999999985544
No 75
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.58 E-value=1e-05 Score=68.47 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.5
Q ss_pred CCCceeEEEcCCCCCCCcccccccC
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
++.++++||||||||||++|.+++.
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHh
Confidence 3457899999999999999987765
No 76
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.58 E-value=1.8e-05 Score=68.59 Aligned_cols=55 Identities=24% Similarity=0.271 Sum_probs=36.5
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccccc------------CCceeeccCCC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPAL------------GYHYYCRGAGS 64 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~------------~~~~~~~~~~~ 64 (225)
+|.++.++.+..++...+. ...+.+++|+||||||||+++++.+ +.+++.++...
T Consensus 22 ~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 22 PHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH 88 (387)
T ss_dssp TTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred CCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence 3556666666665543111 1456799999999999999996322 66777776544
No 77
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.57 E-value=2.6e-05 Score=74.59 Aligned_cols=56 Identities=25% Similarity=0.427 Sum_probs=37.0
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCC----CCceeEEEcCCCCCCCcccc---cccCCceeeccCCC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIK----PPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGS 64 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~----~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~ 64 (225)
+|.+++++.+...+.. ...|+. +..++||+||||||||++|+ ..++.+|+.++.++
T Consensus 461 ~g~~~~~~~l~~~i~~--------~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~ 523 (758)
T 1r6b_X 461 FGQDKAIEALTEAIKM--------ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSE 523 (758)
T ss_dssp CSCHHHHHHHHHHHHH--------HHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred cCHHHHHHHHHHHHHH--------HhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechh
Confidence 3566666666665543 233432 33479999999999999997 33467777665444
No 78
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.56 E-value=2.1e-05 Score=66.69 Aligned_cols=51 Identities=22% Similarity=0.353 Sum_probs=35.2
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccccC--------CceeeccCCC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPALG--------YHYYCRGAGS 64 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~~--------~~~~~~~~~~ 64 (225)
+|.+++++.|..++.. + ...++|||||||||||++|++.+. ..++.++.++
T Consensus 28 ~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~ 86 (327)
T 1iqp_A 28 VGQEHIVKRLKHYVKT-----------G--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD 86 (327)
T ss_dssp CSCHHHHHHHHHHHHH-----------T--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC
T ss_pred hCCHHHHHHHHHHHHc-----------C--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc
Confidence 4777888877776643 2 223599999999999999974332 2356666555
No 79
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.53 E-value=2.4e-05 Score=71.80 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.0
Q ss_pred CceeEEEcCCCCCCCccccccc
Q psy7782 32 PKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~ 53 (225)
..++||+||||||||++|++.+
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa 62 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLK 62 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGG
T ss_pred CCeeEeecCchHHHHHHHHHHH
Confidence 4699999999999999997444
No 80
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.52 E-value=8.8e-06 Score=70.00 Aligned_cols=32 Identities=31% Similarity=0.475 Sum_probs=23.8
Q ss_pred ceeEEEcCCCCCCCcccccccC---------CceeeccCCC
Q psy7782 33 KGVILYGPPGTGKTLPFSPALG---------YHYYCRGAGS 64 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~---------~~~~~~~~~~ 64 (225)
.++|||||||||||++|++.++ ..++.++.++
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~ 99 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD 99 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc
Confidence 3599999999999999974433 3466666655
No 81
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.52 E-value=2.3e-05 Score=67.81 Aligned_cols=51 Identities=29% Similarity=0.457 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccccC--------CceeeccCCC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPALG--------YHYYCRGAGS 64 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~~--------~~~~~~~~~~ 64 (225)
+|.+++++.|...+.. | ..+ ++|||||||||||++|++.++ ..+..++.++
T Consensus 28 ~g~~~~~~~L~~~i~~-----------g-~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~ 86 (340)
T 1sxj_C 28 YGQNEVITTVRKFVDE-----------G-KLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD 86 (340)
T ss_dssp CSCHHHHHHHHHHHHT-----------T-CCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTS
T ss_pred cCcHHHHHHHHHHHhc-----------C-CCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcc
Confidence 3566677766665543 2 122 399999999999999975444 2355565554
No 82
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.52 E-value=3.4e-05 Score=74.98 Aligned_cols=56 Identities=18% Similarity=0.297 Sum_probs=36.3
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCC----CCCceeEEEcCCCCCCCccccccc------CCceeeccCCC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGI----KPPKGVILYGPPGTGKTLPFSPAL------GYHYYCRGAGS 64 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~----~~~~giLl~GppGtGKT~la~~~~------~~~~~~~~~~~ 64 (225)
+|.+++++.+...+.. ...|+ .+..++||+||||||||++|++++ +.+|+.++.++
T Consensus 561 iG~~~a~~~l~~~i~~--------~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~ 626 (854)
T 1qvr_A 561 VGQDEAIRAVADAIRR--------ARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 626 (854)
T ss_dssp CSCHHHHHHHHHHHHH--------HGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTT
T ss_pred CCcHHHHHHHHHHHHH--------HhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 3556666666666543 11222 233589999999999999997333 46777776554
No 83
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.47 E-value=4.2e-05 Score=65.53 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=35.7
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccc------cCCceeeccCCC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPA------LGYHYYCRGAGS 64 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~------~~~~~~~~~~~~ 64 (225)
+|.+...+.+.+.+... .....++||+||||||||++|+++ .+.+|+.++.+.
T Consensus 5 ig~s~~~~~~~~~~~~~-----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~ 63 (304)
T 1ojl_A 5 IGSSPAMQHLLNEIAMV-----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAA 63 (304)
T ss_dssp CCCSHHHHHHHHHHHHH-----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSS
T ss_pred EECCHHHHHHHHHHHHH-----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCC
Confidence 34455555555555441 134578999999999999999733 356787776544
No 84
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.45 E-value=1.8e-05 Score=68.63 Aligned_cols=21 Identities=10% Similarity=-0.050 Sum_probs=19.1
Q ss_pred CCCceeEEEcCCCCCCCcccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~ 50 (225)
..+.+++||||||||||++++
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHH
Confidence 467899999999999999986
No 85
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.43 E-value=1.7e-05 Score=63.14 Aligned_cols=20 Identities=40% Similarity=0.559 Sum_probs=18.0
Q ss_pred CceeEEEcCCCCCCCccccc
Q psy7782 32 PKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~ 51 (225)
+++++|+||||||||++|++
T Consensus 54 ~~~~~l~G~~GtGKT~la~~ 73 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAA 73 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 37999999999999999963
No 86
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.40 E-value=2.5e-05 Score=66.98 Aligned_cols=34 Identities=32% Similarity=0.465 Sum_probs=26.6
Q ss_pred CCceeEEEcCCCCCCCccccccc------CCceeeccCCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPAL------GYHYYCRGAGS 64 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~------~~~~~~~~~~~ 64 (225)
.+.+++||||||||||++|++++ +.+++.++..+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 45799999999999999997433 67777776544
No 87
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.39 E-value=4.9e-05 Score=65.78 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=28.9
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~ 50 (225)
+|.+++++.|...+.. + ..+..+||+||||||||++|+
T Consensus 19 vg~~~~~~~L~~~l~~-----------~-~~~~~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 19 VGQEHVLTALANGLSL-----------G-RIHHAYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp CSCHHHHHHHHHHHHH-----------T-CCCSEEEEESCTTSSHHHHHH
T ss_pred cCcHHHHHHHHHHHHh-----------C-CCCeEEEEECCCCCCHHHHHH
Confidence 4677777777776643 1 234689999999999999986
No 88
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.38 E-value=3e-05 Score=65.48 Aligned_cols=51 Identities=29% Similarity=0.339 Sum_probs=32.8
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccccc--------CCceeeccCCC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPAL--------GYHYYCRGAGS 64 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~--------~~~~~~~~~~~ 64 (225)
+|.+++++.|...+.. + ...++|||||||||||++|++.+ +.+++.++.++
T Consensus 20 ~g~~~~~~~l~~~l~~-----------~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 78 (319)
T 2chq_A 20 VGQDEVIQRLKGYVER-----------K--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD 78 (319)
T ss_dssp CSCHHHHHHHHTTTTT-----------T--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTS
T ss_pred hCCHHHHHHHHHHHhC-----------C--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCcc
Confidence 3566666666554432 2 12249999999999999996332 24566666655
No 89
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=97.32 E-value=2.5e-05 Score=73.09 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=19.6
Q ss_pred CceeEEEcCCCCCCCcccccccC
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~ 54 (225)
..++||+||||||||++|++++.
T Consensus 327 ~~~vLL~GppGtGKT~LAr~la~ 349 (595)
T 3f9v_A 327 DIHILIIGDPGTAKSQMLQFISR 349 (595)
T ss_dssp SCCEEEEESSCCTHHHHHHSSST
T ss_pred CcceEEECCCchHHHHHHHHHHH
Confidence 34899999999999999985554
No 90
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.30 E-value=6.4e-05 Score=63.54 Aligned_cols=51 Identities=22% Similarity=0.272 Sum_probs=33.9
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccccc--------CCceeeccCCC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPAL--------GYHYYCRGAGS 64 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~--------~~~~~~~~~~~ 64 (225)
+|.+++++.|...+.. + ..+. +|||||||||||++|++.+ +.+++.++.++
T Consensus 24 ~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 82 (323)
T 1sxj_B 24 VGNKETIDRLQQIAKD-----------G-NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD 82 (323)
T ss_dssp CSCTHHHHHHHHHHHS-----------C-CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS
T ss_pred HCCHHHHHHHHHHHHc-----------C-CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc
Confidence 3566677776666543 2 2233 9999999999999996332 24466666655
No 91
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.29 E-value=6e-05 Score=65.05 Aligned_cols=52 Identities=23% Similarity=0.314 Sum_probs=34.1
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccccc---------CCceeecc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPAL---------GYHYYCRG 61 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~---------~~~~~~~~ 61 (225)
+|-++.++.|.+.+...+. + ..+..++|+||||||||+++++.+ +..++.++
T Consensus 23 ~gr~~e~~~l~~~l~~~~~--------~-~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 23 PHREDQIRKIASILAPLYR--------E-EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp TTCHHHHHHHHHSSGGGGG--------T-CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CChHHHHHHHHHHHHHHHc--------C-CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 3556666666665543111 1 346789999999999999997333 55666554
No 92
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.28 E-value=8.1e-05 Score=64.57 Aligned_cols=55 Identities=20% Similarity=0.187 Sum_probs=35.7
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCc--eeEEEcCCCCCCCccccccc-------CCceeeccCCC
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPK--GVILYGPPGTGKTLPFSPAL-------GYHYYCRGAGS 64 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~--giLl~GppGtGKT~la~~~~-------~~~~~~~~~~~ 64 (225)
+|-++..+.|.+++...+ . + ..+. .++|+||||||||+++++.+ +..++.++...
T Consensus 20 ~gr~~~~~~l~~~l~~~~-------~-~-~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~ 83 (389)
T 1fnn_A 20 PHREQQLQQLDILLGNWL-------R-N-PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI 83 (389)
T ss_dssp TTCHHHHHHHHHHHHHHH-------H-S-TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT
T ss_pred CChHHHHHHHHHHHHHHH-------c-C-CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc
Confidence 356667777777665411 1 1 2233 89999999999999996332 56677666444
No 93
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.26 E-value=4.4e-05 Score=65.86 Aligned_cols=20 Identities=45% Similarity=0.777 Sum_probs=17.4
Q ss_pred eEEEcCCCCCCCcccccccC
Q psy7782 35 VILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~~~ 54 (225)
++|+||||||||++++..++
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999975444
No 94
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.25 E-value=4.1e-05 Score=67.79 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=23.8
Q ss_pred cCCCCCceeEEEcCCCCCCCcccccccC
Q psy7782 27 MGIKPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 27 ~g~~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
+++.+...++|+|||||||||+++..++
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 4778888999999999999999975543
No 95
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.24 E-value=6.1e-05 Score=64.70 Aligned_cols=19 Identities=42% Similarity=0.773 Sum_probs=17.7
Q ss_pred CceeEEEcCCCCCCCcccc
Q psy7782 32 PKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~ 50 (225)
..+++||||||||||++|.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5899999999999999986
No 96
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.16 E-value=0.0001 Score=77.03 Aligned_cols=69 Identities=14% Similarity=0.089 Sum_probs=46.7
Q ss_pred CChHHHHHcC---CCCCceeEEEcCCCCCCCcccc------cccC--CceeeccCCC--------C--------------
Q psy7782 19 THPEYYEEMG---IKPPKGVILYGPPGTGKTLPFS------PALG--YHYYCRGAGS--------N-------------- 65 (225)
Q Consensus 19 ~~~~~~~~~g---~~~~~giLl~GppGtGKT~la~------~~~~--~~~~~~~~~~--------~-------------- 65 (225)
..+++-.-+| +++.++++||||||||||+||. ...| +-|++....- |
T Consensus 1411 G~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~ 1490 (2050)
T 3cmu_A 1411 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTG 1490 (2050)
T ss_dssp SCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSH
T ss_pred CCHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChH
Confidence 4566666666 8889999999999999999984 2222 2233322110 1
Q ss_pred -CCccchhhhhhcCCCCCC--cccc
Q psy7782 66 -SDKKDDKDKKKKYEPPIP--TRVG 87 (225)
Q Consensus 66 -~~~~~~f~~a~~~~p~ii--d~ig 87 (225)
...+.++..++..+|+++ |.++
T Consensus 1491 E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1491 EQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred HHHHHHHHHHHhcCCCCEEEEcChh
Confidence 234567778889999986 8873
No 97
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.99 E-value=0.00025 Score=61.26 Aligned_cols=21 Identities=14% Similarity=0.339 Sum_probs=18.4
Q ss_pred CCCceeEEEcCCCCCCCcccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~ 50 (225)
..+.++|||||||||||++|+
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHH
Confidence 456789999999999999985
No 98
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.99 E-value=0.00013 Score=58.11 Aligned_cols=32 Identities=22% Similarity=0.122 Sum_probs=24.3
Q ss_pred CCCCceeEEEcCCCCCCCcccccc---cCCceeec
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPA---LGYHYYCR 60 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~---~~~~~~~~ 60 (225)
+.+.+-|+|.|||||||||+++.. .|.++++.
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 445668999999999999999844 47777754
No 99
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.96 E-value=8e-05 Score=67.06 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=25.0
Q ss_pred CceeEEEcCCCCCCCccccccc--------CCceeeccCCC
Q psy7782 32 PKGVILYGPPGTGKTLPFSPAL--------GYHYYCRGAGS 64 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~--------~~~~~~~~~~~ 64 (225)
+.+++||||||||||++|++++ +.+++.++..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 5789999999999999997443 55666655443
No 100
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.95 E-value=0.00014 Score=55.84 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=19.8
Q ss_pred CCceeEEEcCCCCCCCcccccccC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~ 54 (225)
+...++|+||+|+|||+++++.++
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 557899999999999999974443
No 101
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.81 E-value=0.0002 Score=55.87 Aligned_cols=29 Identities=28% Similarity=0.174 Sum_probs=23.7
Q ss_pred CceeEEEcCCCCCCCccccc---ccCCceeec
Q psy7782 32 PKGVILYGPPGTGKTLPFSP---ALGYHYYCR 60 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~---~~~~~~~~~ 60 (225)
++.|+|.||||||||++++. ..|.++++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 46799999999999999973 357787754
No 102
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.77 E-value=0.00026 Score=55.16 Aligned_cols=30 Identities=30% Similarity=0.393 Sum_probs=23.9
Q ss_pred CCceeEEEcCCCCCCCccccccc---CCceeec
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPAL---GYHYYCR 60 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~---~~~~~~~ 60 (225)
.++-|+|.||||+|||++++..+ |..+++.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 34679999999999999998444 7777754
No 103
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.75 E-value=0.00022 Score=61.16 Aligned_cols=63 Identities=11% Similarity=-0.023 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccccc---------CCceeeccCCC---C-CCc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPAL---------GYHYYCRGAGS---N-SDK 68 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~---------~~~~~~~~~~~---~-~~~ 68 (225)
|.+++.+.|...+.. |- ...+|||||||||||++|.+.+ ..+++.++..+ + ..+
T Consensus 1 g~~~~~~~L~~~i~~-----------~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~i 67 (305)
T 2gno_A 1 GAKDQLETLKRIIEK-----------SE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDI 67 (305)
T ss_dssp ---CHHHHHHHHHHT-----------CS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHH
T ss_pred ChHHHHHHHHHHHHC-----------CC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHH
Confidence 456666666666654 21 3589999999999999986332 35677776543 2 235
Q ss_pred cchhhhhhc
Q psy7782 69 KDDKDKKKK 77 (225)
Q Consensus 69 ~~~f~~a~~ 77 (225)
|++++.|..
T Consensus 68 r~li~~~~~ 76 (305)
T 2gno_A 68 RTIKDFLNY 76 (305)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHhh
Confidence 777776653
No 104
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.74 E-value=0.00027 Score=55.30 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=23.7
Q ss_pred CCCCceeEEEcCCCCCCCcccccc---cCCceee
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPA---LGYHYYC 59 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~---~~~~~~~ 59 (225)
+..+.-|+|.||||+||||+++.. .|.++++
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 345667899999999999999733 4666664
No 105
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.70 E-value=0.00038 Score=64.99 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=19.0
Q ss_pred ceeEEEcCCCCCCCcccccccC
Q psy7782 33 KGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~ 54 (225)
..++|+||||||||++|+++++
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHhc
Confidence 5899999999999999975444
No 106
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.68 E-value=0.00022 Score=62.61 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=39.8
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccc---cCCceeeccCCC-C-CCccchhhhh
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPA---LGYHYYCRGAGS-N-SDKKDDKDKK 75 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~---~~~~~~~~~~~~-~-~~~~~~f~~a 75 (225)
.++++.+.+.+.+...+.. | ....++|.||||+|||++++.+ .+.+|+.++... | ..+|+.+..|
T Consensus 3 ~~~~L~~~il~~l~~~i~~-------g--~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a 72 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIED-------N--YRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPM 72 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTT-------C--SCEEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCC
T ss_pred cHHHHHHHHHHHHHHHhcc-------C--CeeEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhh
Confidence 4566666666666542211 1 2346999999999999999744 446776554443 2 4455555443
No 107
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.65 E-value=0.00083 Score=56.96 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=19.2
Q ss_pred CCCceeEEEcCCCCCCCcccccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~ 52 (225)
..+.-++|.||||+||||+|+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L 53 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAI 53 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 34567899999999999999744
No 108
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.64 E-value=0.00027 Score=55.34 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=22.0
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||||+||||+++..++.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 455566889999999999999866664
No 109
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.64 E-value=0.00041 Score=53.67 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=21.3
Q ss_pred CceeEEEcCCCCCCCcccccc---cCCceee
Q psy7782 32 PKGVILYGPPGTGKTLPFSPA---LGYHYYC 59 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~---~~~~~~~ 59 (225)
++-|+|.||||+||||+++.. .+.+++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~ 33 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLA 33 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEE
Confidence 356899999999999999743 3456654
No 110
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.58 E-value=0.00038 Score=54.69 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=22.8
Q ss_pred CceeEEEcCCCCCCCcccccc----cCCceeec
Q psy7782 32 PKGVILYGPPGTGKTLPFSPA----LGYHYYCR 60 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~----~~~~~~~~ 60 (225)
+.-|+|.||||||||++++.. .|.++++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 456899999999999999732 47777754
No 111
>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A
Probab=96.48 E-value=0.0028 Score=48.64 Aligned_cols=58 Identities=26% Similarity=0.368 Sum_probs=46.2
Q ss_pred eeeEEEEEecC-CeEEEEccCCCeEEEeecCCCCcC------------------CCCCCCeEEecCCcceeeeccCC
Q psy7782 161 SVGTLEEIIDD-NHAIVSTSVGSEHYVSILSFVDKD------------------QLEPGCSVLLNHKVHAVVGVLSD 218 (225)
Q Consensus 161 ~vg~v~e~~d~-~~~iV~~~~g~~~~v~v~~~vd~~------------------~L~pG~~V~ln~~~~~Iv~vLp~ 218 (225)
.|.++.|++++ ++++|...+|-+.+|..++.+... .|+||++|.++..+=-..+.+|.
T Consensus 69 ev~tv~EvL~d~~RalV~~~~deerVV~lA~~L~~~~~~~~~~~~~~~~~~~~~~lr~GDsllvD~rag~A~E~ipk 145 (153)
T 2wfw_A 69 EISTLREVLDDGLRALVVGHADEERIVWLAAPLAAVFADPEADIIAYDADSPTRKLRPGDSLLVDTKAGYAFERIPK 145 (153)
T ss_dssp EEEEEEEECTTSSEEEEECTTCCEEEEEECHHHHHHCCCCC-----------------CCEEEEETTTTEEEEEECS
T ss_pred CEEEEEEEeCCCCeEEEEccCCcEEEEEeehhhhcccccccccccccccccccCCCCCCCEEEEcCCCceEEEEcCc
Confidence 57889999999 899998889999999999887543 89999999999977777777775
No 112
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.47 E-value=0.0003 Score=61.04 Aligned_cols=25 Identities=24% Similarity=0.142 Sum_probs=20.1
Q ss_pred CCCCCceeEEEcCCCCCCCcccccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~~~ 52 (225)
|+.+.+.++|+||||||||+||.+.
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlql 143 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHAL 143 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHH
Confidence 4555566799999999999999643
No 113
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.41 E-value=0.0007 Score=52.08 Aligned_cols=27 Identities=26% Similarity=0.480 Sum_probs=21.0
Q ss_pred ceeEEEcCCCCCCCccccccc---CCceee
Q psy7782 33 KGVILYGPPGTGKTLPFSPAL---GYHYYC 59 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~---~~~~~~ 59 (225)
.-+.|.|||||||||+++..+ +.++++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 468999999999999998443 555554
No 114
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.37 E-value=0.00054 Score=52.42 Aligned_cols=28 Identities=25% Similarity=0.159 Sum_probs=21.2
Q ss_pred eeEEEcCCCCCCCcccccc---cCCceeecc
Q psy7782 34 GVILYGPPGTGKTLPFSPA---LGYHYYCRG 61 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~---~~~~~~~~~ 61 (225)
-|+|.||||+||||+++.. .+.++++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 4789999999999999743 466665443
No 115
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.34 E-value=0.00055 Score=53.32 Aligned_cols=28 Identities=36% Similarity=0.647 Sum_probs=22.0
Q ss_pred ceeEEEcCCCCCCCccccccc---CCceeec
Q psy7782 33 KGVILYGPPGTGKTLPFSPAL---GYHYYCR 60 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~---~~~~~~~ 60 (225)
.-|+|.||||+||||+++..+ |.++++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 458899999999999997443 6776654
No 116
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.32 E-value=0.00064 Score=51.77 Aligned_cols=27 Identities=22% Similarity=0.269 Sum_probs=20.7
Q ss_pred eeEEEcCCCCCCCcccccc--cCCceeec
Q psy7782 34 GVILYGPPGTGKTLPFSPA--LGYHYYCR 60 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~--~~~~~~~~ 60 (225)
-|+|.||||+||||+|+.. .|.++++.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLLKERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCcEEEH
Confidence 4789999999999999843 45666553
No 117
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.28 E-value=0.00079 Score=55.02 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=19.3
Q ss_pred CCCCceeEEEcCCCCCCCccccc
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~ 51 (225)
+..++-|+|.||||+||+|.|+.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHH
Confidence 45567789999999999999973
No 118
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=96.28 E-value=0.0011 Score=71.27 Aligned_cols=35 Identities=31% Similarity=0.579 Sum_probs=26.4
Q ss_pred CCceeEEEcCCCCCCCcccc----cccCCceeeccCCCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFS----PALGYHYYCRGAGSN 65 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~----~~~~~~~~~~~~~~~ 65 (225)
..+++||+||||||||++|+ ...+..++.++.+..
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ 1304 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKD 1304 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecC
Confidence 45899999999999999994 334556666666553
No 119
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.25 E-value=0.00082 Score=51.77 Aligned_cols=20 Identities=30% Similarity=0.359 Sum_probs=17.2
Q ss_pred ceeEEEcCCCCCCCcccccc
Q psy7782 33 KGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~ 52 (225)
.-|+|.||||+||||+|+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L 22 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREF 22 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHH
Confidence 46899999999999999743
No 120
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.25 E-value=0.00071 Score=52.43 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=21.6
Q ss_pred eeEEEcCCCCCCCccccc---ccCCceeec
Q psy7782 34 GVILYGPPGTGKTLPFSP---ALGYHYYCR 60 (225)
Q Consensus 34 giLl~GppGtGKT~la~~---~~~~~~~~~ 60 (225)
-|+|.||||+||||+|+. ..|.++++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 589999999999999973 356777654
No 121
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.24 E-value=0.00074 Score=52.64 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=21.8
Q ss_pred eeEEEcCCCCCCCccccc---ccCCceeec
Q psy7782 34 GVILYGPPGTGKTLPFSP---ALGYHYYCR 60 (225)
Q Consensus 34 giLl~GppGtGKT~la~~---~~~~~~~~~ 60 (225)
-|+|.|+||+|||++|+. ..|.++++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 489999999999999973 357777754
No 122
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.17 E-value=0.00097 Score=54.74 Aligned_cols=27 Identities=26% Similarity=0.472 Sum_probs=22.7
Q ss_pred CceeEEEcCCCCCCCccccccc---CCcee
Q psy7782 32 PKGVILYGPPGTGKTLPFSPAL---GYHYY 58 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~---~~~~~ 58 (225)
+.-+.|.||||+||||+++.++ |...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 4678899999999999999877 76554
No 123
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.16 E-value=0.001 Score=52.71 Aligned_cols=29 Identities=34% Similarity=0.517 Sum_probs=22.7
Q ss_pred CceeEEEcCCCCCCCccccc---ccCCceeec
Q psy7782 32 PKGVILYGPPGTGKTLPFSP---ALGYHYYCR 60 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~---~~~~~~~~~ 60 (225)
+.-|+|.||||+||||+|+. ..|.++++.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 34588999999999999973 347777764
No 124
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.15 E-value=0.00064 Score=54.20 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=21.8
Q ss_pred CCCCCceeEEEcCCCCCCCccccccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~~~~ 53 (225)
|+.+..-++|+||||+|||+++...+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~ 41 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTG 41 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 46777778999999999999997554
No 125
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.14 E-value=0.001 Score=51.73 Aligned_cols=30 Identities=27% Similarity=0.503 Sum_probs=23.0
Q ss_pred CCceeEEEcCCCCCCCcccccc---cCCceeec
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPA---LGYHYYCR 60 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~---~~~~~~~~ 60 (225)
.+.-|+|.||||+||||+|+.. .|.++++.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 3457899999999999999733 46766644
No 126
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.11 E-value=0.0015 Score=50.60 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=17.5
Q ss_pred CceeEEEcCCCCCCCccccc---ccCCcee
Q psy7782 32 PKGVILYGPPGTGKTLPFSP---ALGYHYY 58 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~---~~~~~~~ 58 (225)
+.-|+|.|+||+||||+|+. ..+.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 34688999999999999973 3466666
No 127
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.11 E-value=0.0011 Score=53.79 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=22.6
Q ss_pred CCceeEEEcCCCCCCCccccc---ccCCceeec
Q psy7782 31 PPKGVILYGPPGTGKTLPFSP---ALGYHYYCR 60 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~---~~~~~~~~~ 60 (225)
.+.-|+|.||||+||||+|+. ..|.++++.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 346789999999999999973 346666643
No 128
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.10 E-value=0.0009 Score=54.12 Aligned_cols=17 Identities=35% Similarity=0.784 Sum_probs=15.3
Q ss_pred eEEEcCCCCCCCccccc
Q psy7782 35 VILYGPPGTGKTLPFSP 51 (225)
Q Consensus 35 iLl~GppGtGKT~la~~ 51 (225)
|+|.||||+||+|.|+.
T Consensus 3 Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 78999999999999973
No 129
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.08 E-value=0.001 Score=53.21 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=20.2
Q ss_pred eEEEcCCCCCCCccccc---ccCCceeec
Q psy7782 35 VILYGPPGTGKTLPFSP---ALGYHYYCR 60 (225)
Q Consensus 35 iLl~GppGtGKT~la~~---~~~~~~~~~ 60 (225)
|+|.||||+||||+|+. ..|.++++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 78999999999999973 346666544
No 130
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.08 E-value=0.00098 Score=51.92 Aligned_cols=28 Identities=32% Similarity=0.553 Sum_probs=21.6
Q ss_pred CceeEEEcCCCCCCCccccc---ccCCceee
Q psy7782 32 PKGVILYGPPGTGKTLPFSP---ALGYHYYC 59 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~---~~~~~~~~ 59 (225)
+.-|+|.|+||+||||+|+. ..|.++++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 35689999999999999973 34666664
No 131
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.06 E-value=0.0012 Score=53.21 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=22.3
Q ss_pred CceeEEEcCCCCCCCccccc---ccCCceeec
Q psy7782 32 PKGVILYGPPGTGKTLPFSP---ALGYHYYCR 60 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~---~~~~~~~~~ 60 (225)
+.-|+|.||||+||||+|+. ..+.++++.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 35689999999999999973 346666654
No 132
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.03 E-value=0.00059 Score=54.64 Aligned_cols=26 Identities=38% Similarity=0.420 Sum_probs=21.1
Q ss_pred CCCCCceeEEEcCCCCCCCccccccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~~~~ 53 (225)
|+.+..-++|+||||+|||++++..+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 46666778999999999999987444
No 133
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.01 E-value=0.0011 Score=50.96 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=21.9
Q ss_pred ceeEEEcCCCCCCCccccc---ccCCceeec
Q psy7782 33 KGVILYGPPGTGKTLPFSP---ALGYHYYCR 60 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~---~~~~~~~~~ 60 (225)
+-|+|.|+||+|||++|+. ..|.++++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 3589999999999999973 347777653
No 134
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.99 E-value=0.0011 Score=50.84 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=23.1
Q ss_pred ceeEEEcCCCCCCCcccc---cccCCceeec
Q psy7782 33 KGVILYGPPGTGKTLPFS---PALGYHYYCR 60 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~---~~~~~~~~~~ 60 (225)
..|+|.|+|||||||+++ ...|.++++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 578999999999999997 3357888764
No 135
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=95.99 E-value=0.02 Score=47.39 Aligned_cols=57 Identities=26% Similarity=0.355 Sum_probs=46.8
Q ss_pred eeEEEEEecC-CeEEEEccCCCeEEEeecCCCCcC-----------------CCCCCCeEEecCCcceeeeccCC
Q psy7782 162 VGTLEEIIDD-NHAIVSTSVGSEHYVSILSFVDKD-----------------QLEPGCSVLLNHKVHAVVGVLSD 218 (225)
Q Consensus 162 vg~v~e~~d~-~~~iV~~~~g~~~~v~v~~~vd~~-----------------~L~pG~~V~ln~~~~~Iv~vLp~ 218 (225)
|.+|.|+++| ++++|...+|.+-+|..++.+-.. .|+|||+|.++..+=..++.+|.
T Consensus 161 v~tv~E~l~d~~R~lV~~~~~eerVv~lA~~L~~~~~~~~~~~~~~~~~~~~~lr~GDsllvD~rag~A~E~ip~ 235 (251)
T 3m9b_A 161 ISTLREILADGHRALVVGHADEERVVWLADPLIAEDLPDGLPEALNDDTRPRKLRPGDSLLVDTKAGYAFERIPL 235 (251)
T ss_dssp EEEEEEECTTSSEEEEECSSSCEEEEECCGGGTCSCCCCCCCSSSCCCCSCCCCCTTCEEEECTTTCBEEEECCC
T ss_pred EEEEEEEecCCCEEEEecCCCceEEEEechhhhccccccccccccccccccCCCCCCCEEEEeCCCceEEEEccC
Confidence 5678888865 599998889999999998887655 89999999999877666776664
No 136
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.96 E-value=0.0011 Score=52.96 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=20.3
Q ss_pred eEEEcCCCCCCCcccccc---cCCceeec
Q psy7782 35 VILYGPPGTGKTLPFSPA---LGYHYYCR 60 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~---~~~~~~~~ 60 (225)
|+|.||||+||||+|+.. .|.++++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 789999999999999733 46666644
No 137
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.95 E-value=0.00068 Score=54.86 Aligned_cols=26 Identities=27% Similarity=0.254 Sum_probs=21.1
Q ss_pred CCCCCceeEEEcCCCCCCCccccccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~~~~ 53 (225)
|+++..-++|+||||+|||+++...+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~ 45 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLA 45 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHH
Confidence 46666778999999999999997443
No 138
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.89 E-value=0.0015 Score=54.25 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=20.6
Q ss_pred eeEEEcCCCCCCCcccccc---cCCceeec
Q psy7782 34 GVILYGPPGTGKTLPFSPA---LGYHYYCR 60 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~---~~~~~~~~ 60 (225)
-+++.||||+|||++|+.. .+.++++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~ 32 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVAL 32 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEec
Confidence 4789999999999999743 35566544
No 139
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.89 E-value=0.0026 Score=52.60 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=18.8
Q ss_pred CCCceeEEEcCCCCCCCccccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~ 51 (225)
..+.-++|.||||+||||+|+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~ 51 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRI 51 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHH
Confidence 4567789999999999999974
No 140
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.88 E-value=0.0014 Score=51.17 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=22.5
Q ss_pred CCceeEEEcCCCCCCCccccc---ccCCceee
Q psy7782 31 PPKGVILYGPPGTGKTLPFSP---ALGYHYYC 59 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~---~~~~~~~~ 59 (225)
.+.-|.|.||||+||||+|+. ..|.++++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 39 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLS 39 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 345789999999999999973 34666664
No 141
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.88 E-value=0.002 Score=56.22 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=17.7
Q ss_pred CCceeEE--EcCCCCCCCcccc
Q psy7782 31 PPKGVIL--YGPPGTGKTLPFS 50 (225)
Q Consensus 31 ~~~giLl--~GppGtGKT~la~ 50 (225)
.+..+++ +||||||||++++
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHH
Confidence 4568899 9999999999996
No 142
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.87 E-value=0.00082 Score=53.00 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=17.7
Q ss_pred eeEEEcCCCCCCCcccccccC
Q psy7782 34 GVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~ 54 (225)
-+.|.||+|+||||+++.++|
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999986655
No 143
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.84 E-value=0.0016 Score=53.63 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=23.4
Q ss_pred CCCceeEEEcCCCCCCCcccccc---cCCceeec
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPA---LGYHYYCR 60 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~---~~~~~~~~ 60 (225)
..+.-|+|.||||+||||+|+.. .|.++++.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 35667999999999999999743 45555543
No 144
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.80 E-value=0.0012 Score=52.15 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=19.7
Q ss_pred CCCceeEEEcCCCCCCCcccccccC
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
.++.-+.|.||||+||||+++..++
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH
Confidence 3455678999999999999985544
No 145
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.80 E-value=0.0016 Score=50.64 Aligned_cols=18 Identities=39% Similarity=0.575 Sum_probs=16.2
Q ss_pred ceeEEEcCCCCCCCcccc
Q psy7782 33 KGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~ 50 (225)
.-|+|.||||+||||+++
T Consensus 4 ~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458899999999999997
No 146
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.79 E-value=0.0014 Score=52.75 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=21.7
Q ss_pred CCceeEEEcCCCCCCCcccccc---cCCceee
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPA---LGYHYYC 59 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~---~~~~~~~ 59 (225)
.+.-|+|.||||+||||+++.. .+..+++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 3456899999999999999733 4555554
No 147
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.79 E-value=0.0019 Score=52.62 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=22.5
Q ss_pred CceeEEEcCCCCCCCccccc---ccCCceeec
Q psy7782 32 PKGVILYGPPGTGKTLPFSP---ALGYHYYCR 60 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~---~~~~~~~~~ 60 (225)
+.-|+|.||||+||||+|+. ..+.++++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 35699999999999999973 346666654
No 148
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.78 E-value=0.0013 Score=51.50 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=21.8
Q ss_pred CceeEEEcCCCCCCCccccc---ccCCceee
Q psy7782 32 PKGVILYGPPGTGKTLPFSP---ALGYHYYC 59 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~---~~~~~~~~ 59 (225)
+.-|.|.||||+||||+|+. ..|.++++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 45689999999999999973 34666664
No 149
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.78 E-value=0.0021 Score=50.95 Aligned_cols=29 Identities=24% Similarity=0.485 Sum_probs=22.4
Q ss_pred CceeEEEcCCCCCCCcccccc---cCCceeec
Q psy7782 32 PKGVILYGPPGTGKTLPFSPA---LGYHYYCR 60 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~---~~~~~~~~ 60 (225)
++-|+|.||||+||||+|+.. .|..+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 457899999999999999733 36666643
No 150
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.77 E-value=0.002 Score=51.07 Aligned_cols=25 Identities=36% Similarity=0.224 Sum_probs=19.3
Q ss_pred eeEEEcCCCCCCCcccccc--cCCcee
Q psy7782 34 GVILYGPPGTGKTLPFSPA--LGYHYY 58 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~--~~~~~~ 58 (225)
-+.|.|||||||||+++.. .|.+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~lg~~~i 30 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDLGVPLV 30 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCccc
Confidence 4678999999999999844 455554
No 151
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.76 E-value=0.0017 Score=49.66 Aligned_cols=26 Identities=27% Similarity=0.269 Sum_probs=20.7
Q ss_pred eeEEEcCCCCCCCccccc---ccCCceee
Q psy7782 34 GVILYGPPGTGKTLPFSP---ALGYHYYC 59 (225)
Q Consensus 34 giLl~GppGtGKT~la~~---~~~~~~~~ 59 (225)
-|+|.|+||+|||++|+. ..|.++++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 378999999999999973 35677764
No 152
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.75 E-value=0.0014 Score=52.79 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=22.2
Q ss_pred ceeEEEcCCCCCCCccccc---ccCCceeec
Q psy7782 33 KGVILYGPPGTGKTLPFSP---ALGYHYYCR 60 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~---~~~~~~~~~ 60 (225)
.-|+|.||||+||||+|+. ..|.++++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4589999999999999973 357777754
No 153
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.74 E-value=0.00077 Score=54.04 Aligned_cols=27 Identities=26% Similarity=0.270 Sum_probs=22.0
Q ss_pred CCCCCceeEEEcCCCCCCCcccccccC
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
|+.+..-+.|.||+|+|||+|++.+++
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 556666678999999999999986655
No 154
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.74 E-value=0.0017 Score=50.41 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=18.0
Q ss_pred CCceeEEEcCCCCCCCcccccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~ 52 (225)
+..=+.|.||+|+||||+++..
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4445779999999999999853
No 155
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.73 E-value=0.0021 Score=50.77 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=22.2
Q ss_pred CceeEEEcCCCCCCCcccc---cccCCceeec
Q psy7782 32 PKGVILYGPPGTGKTLPFS---PALGYHYYCR 60 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~---~~~~~~~~~~ 60 (225)
+.-|+|.||||+||||+++ ...|.++++.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 4568899999999999996 3456666653
No 156
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.72 E-value=0.0016 Score=50.59 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=15.5
Q ss_pred eeEEEcCCCCCCCcccc
Q psy7782 34 GVILYGPPGTGKTLPFS 50 (225)
Q Consensus 34 giLl~GppGtGKT~la~ 50 (225)
-|+|.||||+||||+|+
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999996
No 157
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.69 E-value=0.0013 Score=52.16 Aligned_cols=28 Identities=29% Similarity=0.519 Sum_probs=21.0
Q ss_pred CCceeEEEcCCCCCCCccccccc---CCcee
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPAL---GYHYY 58 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~---~~~~~ 58 (225)
++.-+.|.||||+||||+++..+ |..++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 34568899999999999998544 44444
No 158
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.69 E-value=0.002 Score=60.55 Aligned_cols=16 Identities=56% Similarity=0.883 Sum_probs=13.8
Q ss_pred eeEEEcCCCCCCCccc
Q psy7782 34 GVILYGPPGTGKTLPF 49 (225)
Q Consensus 34 giLl~GppGtGKT~la 49 (225)
=.|++||||||||+.+
T Consensus 207 ~~lI~GPPGTGKT~ti 222 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTV 222 (646)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred ceEEECCCCCCHHHHH
Confidence 3589999999999865
No 159
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.63 E-value=0.0015 Score=51.07 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=18.3
Q ss_pred CceeEEEcCCCCCCCcccccccC
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~ 54 (225)
.+-+.|.||+|+||||+++..++
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34578999999999999974443
No 160
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.61 E-value=0.0014 Score=52.05 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=20.1
Q ss_pred CCCceeEEEcCCCCCCCcccccccC
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
.++.-+.|.||+||||||+++..++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4556678999999999999985544
No 161
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.58 E-value=0.0015 Score=53.02 Aligned_cols=26 Identities=35% Similarity=0.420 Sum_probs=22.0
Q ss_pred CCCCCceeEEEcCCCCCCCccccccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~~~~ 53 (225)
|+.+..-+.|.||+|+|||||++..+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 56677778999999999999998555
No 162
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.58 E-value=0.0022 Score=51.94 Aligned_cols=23 Identities=39% Similarity=0.470 Sum_probs=19.8
Q ss_pred CCCCCceeEEEcCCCCCCCcccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~ 50 (225)
|+++..-++++|+||+|||++|.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l 48 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHH
Confidence 56777778999999999999984
No 163
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.56 E-value=0.0018 Score=51.84 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=21.2
Q ss_pred eeEEEcCCCCCCCccccc---ccCCceeec
Q psy7782 34 GVILYGPPGTGKTLPFSP---ALGYHYYCR 60 (225)
Q Consensus 34 giLl~GppGtGKT~la~~---~~~~~~~~~ 60 (225)
-|+|.||||+||||+|+. ..|.++++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 378999999999999973 346666655
No 164
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.54 E-value=0.0013 Score=51.55 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=17.7
Q ss_pred eeEEEcCCCCCCCcccccccC
Q psy7782 34 GVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~ 54 (225)
-+.|.||||+||||+++.+++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 367899999999999986654
No 165
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.53 E-value=0.0021 Score=51.97 Aligned_cols=23 Identities=48% Similarity=0.650 Sum_probs=19.8
Q ss_pred CCCCCceeEEEcCCCCCCCcccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~ 50 (225)
|+.+..-++++||||+|||+++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~ 41 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQ 41 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHH
Confidence 56677778999999999999975
No 166
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.51 E-value=0.0054 Score=51.91 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=16.8
Q ss_pred ceeEEEcCCCCCCCcccc
Q psy7782 33 KGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~ 50 (225)
+.++++||+|+|||++++
T Consensus 32 ~~v~i~G~~G~GKT~Ll~ 49 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLR 49 (350)
T ss_dssp SEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 589999999999999986
No 167
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.49 E-value=0.0016 Score=50.23 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=21.1
Q ss_pred CceeEEEcCCCCCCCccccccc---CCceee
Q psy7782 32 PKGVILYGPPGTGKTLPFSPAL---GYHYYC 59 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~---~~~~~~ 59 (225)
..-+.|.||||+||||+++..+ |..+++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 3457899999999999998443 555554
No 168
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.49 E-value=0.0032 Score=50.09 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=19.5
Q ss_pred CCCCceeEEEcCCCCCCCccccc
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~ 51 (225)
+..++-++|.||||+||||+++.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~ 31 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKK 31 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHHHH
Confidence 45667889999999999999873
No 169
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.42 E-value=0.0024 Score=51.68 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=20.3
Q ss_pred eEEEcCCCCCCCcccccc---cCCceeec
Q psy7782 35 VILYGPPGTGKTLPFSPA---LGYHYYCR 60 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~---~~~~~~~~ 60 (225)
|+|.||||+||||+|+.. .|.++++.
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 789999999999999733 46666654
No 170
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.42 E-value=0.0023 Score=54.78 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=19.8
Q ss_pred CCCceeEEEcCCCCCCCcccccccC
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
.++.-+.|.||+|+||||+++..+|
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3455678999999999999975554
No 171
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.35 E-value=0.0022 Score=50.54 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=18.4
Q ss_pred CceeEEEcCCCCCCCcccccccC
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~ 54 (225)
..=+.|.||+|+||||+++..++
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 34567899999999999985554
No 172
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.34 E-value=0.0043 Score=49.49 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=18.7
Q ss_pred CCceeEEEcCCCCCCCcccccccC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~ 54 (225)
+..-+.+.||+|+|||||++.+++
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 444567999999999999975544
No 173
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.31 E-value=0.0015 Score=54.61 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=19.9
Q ss_pred CCCCCceeEEEcCCCCCCCccccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~~ 51 (225)
|+.+..-++|+||||+|||+|+..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHH
Confidence 555666789999999999999863
No 174
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.28 E-value=0.003 Score=49.94 Aligned_cols=26 Identities=27% Similarity=0.158 Sum_probs=19.9
Q ss_pred eeEEEcCCCCCCCcccccc--cCCceee
Q psy7782 34 GVILYGPPGTGKTLPFSPA--LGYHYYC 59 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~--~~~~~~~ 59 (225)
-|.|.||+||||||+++.. .|.++++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~g~~~i~ 30 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRELGAYVLD 30 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHTTCEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHHCCCEEEE
Confidence 4789999999999999744 4555553
No 175
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.23 E-value=0.0022 Score=53.94 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=21.3
Q ss_pred cCCCCCceeEEEcCCCCCCCccccc
Q psy7782 27 MGIKPPKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 27 ~g~~~~~giLl~GppGtGKT~la~~ 51 (225)
+|+.+..-++|.||||+|||+|+..
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHH
Confidence 5677777788999999999999863
No 176
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.23 E-value=0.0032 Score=49.67 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=16.1
Q ss_pred ceeEEEcCCCCCCCcccc
Q psy7782 33 KGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~ 50 (225)
.-|+|.||||+||||+|+
T Consensus 5 ~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHH
Confidence 457899999999999996
No 177
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.22 E-value=0.0032 Score=50.52 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=19.8
Q ss_pred ceeEEEcCCCCCCCccccccc---CCcee
Q psy7782 33 KGVILYGPPGTGKTLPFSPAL---GYHYY 58 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~---~~~~~ 58 (225)
.-+.|.|||||||||+++..+ |.+++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 357899999999999998443 44444
No 178
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.21 E-value=0.0037 Score=51.59 Aligned_cols=27 Identities=33% Similarity=0.413 Sum_probs=21.3
Q ss_pred CceeEEEcCCCCCCCccccccc---CCcee
Q psy7782 32 PKGVILYGPPGTGKTLPFSPAL---GYHYY 58 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~---~~~~~ 58 (225)
+.-+.+.||||||||++++..+ |.+++
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 4568899999999999998554 65555
No 179
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.20 E-value=0.0026 Score=50.91 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=17.7
Q ss_pred CCceeEEEcCCCCCCCcccccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~ 52 (225)
++.=+.|.||+|+|||++++..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L 28 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAV 28 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHHH
Confidence 3455789999999999999743
No 180
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.20 E-value=0.0051 Score=53.33 Aligned_cols=33 Identities=24% Similarity=0.200 Sum_probs=24.1
Q ss_pred cCChHHHHHc--CCCCCceeEEEcCCCCCCCcccc
Q psy7782 18 LTHPEYYEEM--GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 18 l~~~~~~~~~--g~~~~~giLl~GppGtGKT~la~ 50 (225)
...+.+-.-+ |+++..-++++||||+|||++|.
T Consensus 106 TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~ 140 (343)
T 1v5w_A 106 TGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSH 140 (343)
T ss_dssp CSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHH
T ss_pred cCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHH
Confidence 3445555544 46666667899999999999985
No 181
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.17 E-value=0.003 Score=55.37 Aligned_cols=33 Identities=18% Similarity=0.103 Sum_probs=24.3
Q ss_pred cCChHHHHHcC---CCCCceeEEEcCCCCCCCcccc
Q psy7782 18 LTHPEYYEEMG---IKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 18 l~~~~~~~~~g---~~~~~giLl~GppGtGKT~la~ 50 (225)
...+++-.-+| +++..-++++||||||||+|+.
T Consensus 44 TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal 79 (356)
T 3hr8_A 44 TGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLAL 79 (356)
T ss_dssp CSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHH
T ss_pred CCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHH
Confidence 34555555554 5566668899999999999985
No 182
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.14 E-value=0.0033 Score=54.84 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=19.2
Q ss_pred CCCCCceeEEEcCCCCCCCcccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~ 50 (225)
|+++.+-++++||||+|||+||.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal 79 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVAL 79 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHH
Confidence 35566668999999999999985
No 183
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.14 E-value=0.0022 Score=51.03 Aligned_cols=24 Identities=33% Similarity=0.646 Sum_probs=18.5
Q ss_pred CCceeEEEcCCCCCCCcccccccC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~ 54 (225)
+.+-+.|.||+|+||||+++.+++
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 446688999999999999975544
No 184
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.08 E-value=0.0059 Score=51.74 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=16.6
Q ss_pred ceeEEEcCCCCCCCcccc
Q psy7782 33 KGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~ 50 (225)
..++++||+|+|||++++
T Consensus 31 ~~v~i~G~~G~GKT~L~~ 48 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIK 48 (357)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 489999999999999986
No 185
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.07 E-value=0.0042 Score=49.91 Aligned_cols=18 Identities=39% Similarity=0.724 Sum_probs=15.6
Q ss_pred ceeEEEcCCCCCCCcccc
Q psy7782 33 KGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~ 50 (225)
--.|++|+||||||++|.
T Consensus 6 mi~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMV 23 (199)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHH
Confidence 357899999999999874
No 186
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.07 E-value=0.004 Score=50.40 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=15.0
Q ss_pred CCceeEEEcCCCCCCCccccccc-C
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPAL-G 54 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~-~ 54 (225)
+..=+.|.||+|+||||+++..+ +
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhc
Confidence 34456799999999999998776 5
No 187
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.06 E-value=0.0058 Score=52.44 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=23.9
Q ss_pred CChHHHHHc--CCCCCceeEEEcCCCCCCCcccc
Q psy7782 19 THPEYYEEM--GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 19 ~~~~~~~~~--g~~~~~giLl~GppGtGKT~la~ 50 (225)
..+.+-.-+ |+++..-++++||||+|||++|.
T Consensus 92 G~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~ 125 (324)
T 2z43_A 92 GSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCH 125 (324)
T ss_dssp SCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHH
T ss_pred CchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHH
Confidence 344544444 46666778999999999999985
No 188
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.04 E-value=0.0027 Score=51.34 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=19.6
Q ss_pred CCCCceeEEEcCCCCCCCcccccccC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
+.+..-+.|.||+|+||||+++.++|
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 34445577999999999999986655
No 189
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.04 E-value=0.0042 Score=49.46 Aligned_cols=18 Identities=33% Similarity=0.772 Sum_probs=16.4
Q ss_pred ceeEEEcCCCCCCCcccc
Q psy7782 33 KGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~ 50 (225)
|.|+|.||+|+|||++++
T Consensus 2 RpIVi~GPSG~GK~Tl~~ 19 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLK 19 (186)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 569999999999999986
No 190
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.03 E-value=0.0032 Score=55.21 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=19.9
Q ss_pred CCCceeEEEcCCCCCCCcccccccC
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
.++.-+.|.||+|+||||+++.+++
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHh
Confidence 3455678999999999999975554
No 191
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.03 E-value=0.0034 Score=52.51 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=24.8
Q ss_pred hHHHHHcCCCCCceeEEEcCCCCCCCcccccccC
Q psy7782 21 PEYYEEMGIKPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 21 ~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
+..+..+.+.+..-+++.||+|+||||+++.+++
T Consensus 14 ~~vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 14 PDKVLELCHRKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp CTHHHHGGGCSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCEEEEECCCCccHHHHHHHHHH
Confidence 3455555545555578999999999999985555
No 192
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.02 E-value=0.0039 Score=51.54 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=22.0
Q ss_pred ceeEEEcCCCCCCCccccccc---CCcee
Q psy7782 33 KGVILYGPPGTGKTLPFSPAL---GYHYY 58 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~---~~~~~ 58 (225)
.-|.|.||+||||||+++..+ |..++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 457799999999999999777 87766
No 193
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.01 E-value=0.0066 Score=53.11 Aligned_cols=30 Identities=27% Similarity=0.329 Sum_probs=23.3
Q ss_pred hHHHHHc---CCCCCceeEEEcCCCCCCCcccc
Q psy7782 21 PEYYEEM---GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 21 ~~~~~~~---g~~~~~giLl~GppGtGKT~la~ 50 (225)
+.+-.-+ |+++.+-++++||||+|||++|.
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal 81 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTL 81 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHH
Confidence 4454445 36777789999999999999985
No 194
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.98 E-value=0.0054 Score=48.07 Aligned_cols=29 Identities=24% Similarity=0.246 Sum_probs=21.8
Q ss_pred CceeEEEcCCCCCCCcccccc--cCCceeec
Q psy7782 32 PKGVILYGPPGTGKTLPFSPA--LGYHYYCR 60 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~--~~~~~~~~ 60 (225)
+.-|.|.|++|||||++++.. .|.++++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSWGYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHTTCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHCCCEEEcc
Confidence 456889999999999999722 26666643
No 195
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.97 E-value=0.0035 Score=53.79 Aligned_cols=29 Identities=28% Similarity=0.584 Sum_probs=23.9
Q ss_pred cCCCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 27 MGIKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 27 ~g~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+++..-+.|.||+|+|||||++.++|.
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhh
Confidence 45666677889999999999999977764
No 196
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.94 E-value=0.0035 Score=53.76 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=18.5
Q ss_pred CCCceeEEEcCCCCCCCcccccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~ 52 (225)
.+++-+++.||+|+||||++...
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~L 124 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKL 124 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHH
Confidence 34566889999999999988633
No 197
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.92 E-value=0.0051 Score=51.03 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=21.0
Q ss_pred CceeEEEcCCCCCCCcccccc------cCCcee
Q psy7782 32 PKGVILYGPPGTGKTLPFSPA------LGYHYY 58 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~------~~~~~~ 58 (225)
+.-|+|.|+||+||||+|+.. .|.+++
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i 36 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVI 36 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 346889999999999999732 566666
No 198
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.89 E-value=0.0047 Score=48.37 Aligned_cols=16 Identities=25% Similarity=0.584 Sum_probs=14.9
Q ss_pred eEEEcCCCCCCCcccc
Q psy7782 35 VILYGPPGTGKTLPFS 50 (225)
Q Consensus 35 iLl~GppGtGKT~la~ 50 (225)
|.|.|+||+||||+++
T Consensus 3 I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCccCHHHHHH
Confidence 7899999999999997
No 199
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.89 E-value=0.0065 Score=51.86 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=23.3
Q ss_pred CChHHHHHc--CCCCCceeEEEcCCCCCCCcccc
Q psy7782 19 THPEYYEEM--GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 19 ~~~~~~~~~--g~~~~~giLl~GppGtGKT~la~ 50 (225)
..+.+-.-+ |+++..-++++||||+|||++|.
T Consensus 83 G~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~ 116 (322)
T 2i1q_A 83 SSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMH 116 (322)
T ss_dssp SCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHH
T ss_pred CChhHHHhcCCCccCCeEEEEECCCCCCHHHHHH
Confidence 344444444 45666668999999999999985
No 200
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.85 E-value=0.0072 Score=48.83 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=17.4
Q ss_pred CceeEEEcCCCCCCCcccc
Q psy7782 32 PKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~ 50 (225)
.++++|.||+|+|||++|.
T Consensus 34 g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp TEEEEEECCCTTTTHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 5789999999999999985
No 201
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.84 E-value=0.0062 Score=52.65 Aligned_cols=29 Identities=31% Similarity=0.398 Sum_probs=22.6
Q ss_pred CceeEEEcCCCCCCCcccc---cccCCceeec
Q psy7782 32 PKGVILYGPPGTGKTLPFS---PALGYHYYCR 60 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~---~~~~~~~~~~ 60 (225)
++-++|.||+|+|||++|. ...+..+++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~ 36 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISV 36 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEec
Confidence 3578999999999999996 3345666665
No 202
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.82 E-value=0.0031 Score=49.44 Aligned_cols=22 Identities=27% Similarity=0.643 Sum_probs=17.7
Q ss_pred ceeEEEcCCCCCCCcccccccC
Q psy7782 33 KGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~ 54 (225)
+-+.|.||+|+||||+++.+++
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3467899999999999985554
No 203
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.82 E-value=0.0048 Score=48.14 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=19.9
Q ss_pred eEEEcCCCCCCCccccc---cc---CCceeecc
Q psy7782 35 VILYGPPGTGKTLPFSP---AL---GYHYYCRG 61 (225)
Q Consensus 35 iLl~GppGtGKT~la~~---~~---~~~~~~~~ 61 (225)
|.|.|||||||||+++. .. |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 67999999999999972 22 77776553
No 204
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.81 E-value=0.0068 Score=47.60 Aligned_cols=30 Identities=13% Similarity=0.074 Sum_probs=21.9
Q ss_pred CceeEEEcCCCCCCCcccccc---c-CCceeecc
Q psy7782 32 PKGVILYGPPGTGKTLPFSPA---L-GYHYYCRG 61 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~---~-~~~~~~~~ 61 (225)
+.-|.|.||||+||||+++.. . |.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 456889999999999998622 2 46666543
No 205
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.81 E-value=0.0038 Score=48.26 Aligned_cols=28 Identities=29% Similarity=0.150 Sum_probs=22.1
Q ss_pred CCCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
.+.+..-+.|.||.|+|||||++.++|.
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3444455789999999999999977774
No 206
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.80 E-value=0.0049 Score=53.35 Aligned_cols=22 Identities=27% Similarity=0.199 Sum_probs=17.3
Q ss_pred CCCCCceeEEEcCCCCCCCcccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~ 50 (225)
|+++. -++++||||+|||+||-
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~L 46 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGL 46 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHH
Confidence 35544 46899999999999973
No 207
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.79 E-value=0.0038 Score=51.92 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=23.3
Q ss_pred CceeEEEcCCCCCCCcccccc---cCCceeec
Q psy7782 32 PKGVILYGPPGTGKTLPFSPA---LGYHYYCR 60 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~---~~~~~~~~ 60 (225)
..-+.|.|||||||||+++.. .|.+|++.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 567999999999999999743 56777753
No 208
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.77 E-value=0.0037 Score=49.87 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=19.6
Q ss_pred CCCCceeEEEcCCCCCCCcccccccC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
+.+..-+.|.||+|+||||+++.++|
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 34444567999999999999986666
No 209
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.75 E-value=0.0045 Score=52.01 Aligned_cols=26 Identities=27% Similarity=0.407 Sum_probs=20.1
Q ss_pred ceeEEEcCCCCCCCccccccc----CCcee
Q psy7782 33 KGVILYGPPGTGKTLPFSPAL----GYHYY 58 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~----~~~~~ 58 (225)
.-|+|.||||+||||+|+..+ |..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 468999999999999997433 55555
No 210
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.74 E-value=0.0026 Score=55.42 Aligned_cols=35 Identities=20% Similarity=0.149 Sum_probs=24.2
Q ss_pred CChHHHHH--cCCCCCceeEEEcCCCCCCCccccccc
Q psy7782 19 THPEYYEE--MGIKPPKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 19 ~~~~~~~~--~g~~~~~giLl~GppGtGKT~la~~~~ 53 (225)
..+.+-.- .|+++..-+.|+||||+|||+|+...+
T Consensus 116 G~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~ 152 (349)
T 1pzn_A 116 GSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLA 152 (349)
T ss_dssp SCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 34444333 345666667899999999999997443
No 211
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.73 E-value=0.0054 Score=47.63 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=21.2
Q ss_pred eEEEcCCCCCCCcccccc------cCCceeecc
Q psy7782 35 VILYGPPGTGKTLPFSPA------LGYHYYCRG 61 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~------~~~~~~~~~ 61 (225)
|.|.|+||+||||+++.. .|.++++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 689999999999999732 377777653
No 212
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.72 E-value=0.0063 Score=48.14 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=17.6
Q ss_pred CCceeEEEcCCCCCCCccccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~ 51 (225)
.+.-|.|.|+||+||||+++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~ 28 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRK 28 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 345688999999999999973
No 213
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.71 E-value=0.0059 Score=48.26 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=17.2
Q ss_pred CceeEEEcCCCCCCCccccc
Q psy7782 32 PKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~ 51 (225)
+.-|.|.|+||+||||+++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~ 29 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKL 29 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHH
Confidence 45688999999999999973
No 214
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.71 E-value=0.0048 Score=48.95 Aligned_cols=23 Identities=17% Similarity=0.007 Sum_probs=18.2
Q ss_pred CceeEEEcCCCCCCCcccccccC
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~ 54 (225)
+.-+.+.||||+||||+++..++
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34467999999999999985444
No 215
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.69 E-value=0.0076 Score=48.16 Aligned_cols=28 Identities=29% Similarity=0.250 Sum_probs=21.7
Q ss_pred ceeEEEcCCCCCCCccccc--ccCCceeec
Q psy7782 33 KGVILYGPPGTGKTLPFSP--ALGYHYYCR 60 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~--~~~~~~~~~ 60 (225)
.-|.|.|++|+||||+++. ..|.++++.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFADLGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHcCCEEEEc
Confidence 4578999999999999973 356666654
No 216
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.64 E-value=0.0081 Score=53.41 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=23.0
Q ss_pred ChHHHHHc--CCCCCceeEEEcCCCCCCCcccc
Q psy7782 20 HPEYYEEM--GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 20 ~~~~~~~~--g~~~~~giLl~GppGtGKT~la~ 50 (225)
.+++-.-+ |+.+..-++|+||||||||+|+.
T Consensus 164 ~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 164 SKNLDTLLGGGVETGSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHH
T ss_pred ChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHH
Confidence 34444434 46666678899999999999997
No 217
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.61 E-value=0.0055 Score=53.82 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=24.2
Q ss_pred CChHHHHHc---CCCCCceeEEEcCCCCCCCcccc
Q psy7782 19 THPEYYEEM---GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 19 ~~~~~~~~~---g~~~~~giLl~GppGtGKT~la~ 50 (225)
..+++-.-+ |+++..-++++||||+|||+||.
T Consensus 58 G~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal 92 (366)
T 1xp8_A 58 GSLSLDLALGVGGIPRGRITEIYGPESGGKTTLAL 92 (366)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHH
T ss_pred CCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHH
Confidence 345555544 46667778999999999999984
No 218
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.60 E-value=0.0049 Score=66.28 Aligned_cols=48 Identities=21% Similarity=0.188 Sum_probs=37.1
Q ss_pred CCceeEEEcCCCCCCCcccc---cccCCceeeccCCCC---CCccchhhhhhcC
Q psy7782 31 PPKGVILYGPPGTGKTLPFS---PALGYHYYCRGAGSN---SDKKDDKDKKKKY 78 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~---~~~~~~~~~~~~~~~---~~~~~~f~~a~~~ 78 (225)
...|++++||||||||.+++ ...|.+++.++..++ +...++|..|.+.
T Consensus 644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~ 697 (2695)
T 4akg_A 644 QKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQI 697 (2695)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHH
T ss_pred hCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhc
Confidence 34799999999999999997 678899999988886 3345666555443
No 219
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.58 E-value=0.0059 Score=48.67 Aligned_cols=28 Identities=25% Similarity=0.184 Sum_probs=21.6
Q ss_pred ceeEEEcCCCCCCCcccc--ccc-CCceeec
Q psy7782 33 KGVILYGPPGTGKTLPFS--PAL-GYHYYCR 60 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~--~~~-~~~~~~~ 60 (225)
.-|.|.|++||||||+++ +.. |.++++.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 456799999999999997 333 7777753
No 220
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.52 E-value=0.0087 Score=46.57 Aligned_cols=22 Identities=36% Similarity=0.329 Sum_probs=18.0
Q ss_pred CCceeEEEcCCCCCCCcccccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~ 52 (225)
.+.-++|.|+||+||||+++..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L 33 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRL 33 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH
Confidence 4456789999999999999743
No 221
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.52 E-value=0.004 Score=54.48 Aligned_cols=34 Identities=26% Similarity=0.498 Sum_probs=22.3
Q ss_pred hHHHHHcCCCCCceeEEEcCCCCCCCcccccccC
Q psy7782 21 PEYYEEMGIKPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 21 ~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
++.+..+-..+..-+++.||+|+||||+.++++|
T Consensus 112 ~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 112 GEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp CHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred hHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3444444223334478999999999999874433
No 222
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.49 E-value=0.01 Score=47.02 Aligned_cols=23 Identities=17% Similarity=-0.021 Sum_probs=18.2
Q ss_pred CCceeEEEcCCCCCCCccccccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~ 53 (225)
.+.-+.+.||+|+||||+++..+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~ 43 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLS 43 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34457799999999999997443
No 223
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.49 E-value=0.0069 Score=47.91 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=17.4
Q ss_pred CceeEEEcCCCCCCCcccc
Q psy7782 32 PKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~ 50 (225)
.+|+||.||+|+|||++|.
T Consensus 16 G~gvli~G~SGaGKStlal 34 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSL 34 (181)
T ss_dssp TEEEEEEESSSSSHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHH
Confidence 5799999999999999885
No 224
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.46 E-value=0.0054 Score=49.27 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=18.8
Q ss_pred CCCceeEEEcCCCCCCCccccccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~ 53 (225)
...+-+.|.||+|+|||++++.++
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~ 40 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALL 40 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHH
Confidence 345667899999999999987443
No 225
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.38 E-value=0.0047 Score=54.28 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=24.0
Q ss_pred HHHHHcCCCCCceeEEEcCCCCCCCcccccccC
Q psy7782 22 EYYEEMGIKPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 22 ~~~~~~g~~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
..+..+-+.+..-+++.||+|+||||+++.+++
T Consensus 126 ~~l~~l~~~~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 126 DKVLELCHRKMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSHHHHTTSSSEEEEEECSSSSSHHHHHHHHHH
T ss_pred HHHHHHhhcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 345555455555678999999999999975544
No 226
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.33 E-value=0.011 Score=52.58 Aligned_cols=29 Identities=31% Similarity=0.445 Sum_probs=21.5
Q ss_pred CCceeEEEcCCCCCCCcccccc---cCCceee
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPA---LGYHYYC 59 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~---~~~~~~~ 59 (225)
.+.=|+|.||||+||||+|+.. .+..+++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 3566889999999999999743 3444443
No 227
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.31 E-value=0.0074 Score=47.47 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=20.4
Q ss_pred eeEEEcCCCCCCCcccccc---cCCceee
Q psy7782 34 GVILYGPPGTGKTLPFSPA---LGYHYYC 59 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~---~~~~~~~ 59 (225)
-|.+.||+|+|||++++.. .|.++++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d 32 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLS 32 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 5789999999999999733 4566664
No 228
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.29 E-value=0.0038 Score=57.06 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=19.7
Q ss_pred CCCceeEEEcCCCCCCCcccccccC
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
..+.-+.|.||+|+||||+++.++|
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHH
Confidence 3445578999999999999976555
No 229
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.28 E-value=0.008 Score=50.57 Aligned_cols=29 Identities=24% Similarity=0.114 Sum_probs=21.8
Q ss_pred CceeEEEcCCCCCCCccccc--ccCCceeec
Q psy7782 32 PKGVILYGPPGTGKTLPFSP--ALGYHYYCR 60 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~--~~~~~~~~~ 60 (225)
+.-|.|.|+||+||||+|+. ..|.++++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKNLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCcEEeh
Confidence 34588999999999999973 356666644
No 230
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.21 E-value=0.013 Score=46.02 Aligned_cols=31 Identities=13% Similarity=0.135 Sum_probs=24.1
Q ss_pred cCCCCCceeEEEcCCCCCCCcccccccCCce
Q psy7782 27 MGIKPPKGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 27 ~g~~~~~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
+.+....-+.|.||+|+|||+|.++.+|..+
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~ 51 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKS 51 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC--
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4555555688999999999999998888764
No 231
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.20 E-value=0.011 Score=47.08 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=19.4
Q ss_pred CCCCceeEEEcCCCCCCCcccccc
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~ 52 (225)
...+.-++|.|+||+||||+++..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l 45 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVEL 45 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHH
Confidence 445566889999999999999743
No 232
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.15 E-value=0.012 Score=50.38 Aligned_cols=32 Identities=25% Similarity=0.184 Sum_probs=23.6
Q ss_pred CChHHHHH-cCCCCCceeEEEcCCCCCCCcccc
Q psy7782 19 THPEYYEE-MGIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 19 ~~~~~~~~-~g~~~~~giLl~GppGtGKT~la~ 50 (225)
..+++-.- .|+.+..=+++.|+||+|||++|.
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l 86 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFAL 86 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHH
Confidence 34444433 357777778999999999999984
No 233
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.11 E-value=0.0087 Score=47.19 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=14.5
Q ss_pred eeEEEcCCCCCCCccc
Q psy7782 34 GVILYGPPGTGKTLPF 49 (225)
Q Consensus 34 giLl~GppGtGKT~la 49 (225)
-++++||||+|||+++
T Consensus 5 i~vi~G~~gsGKTT~l 20 (184)
T 2orw_A 5 LTVITGPMYSGKTTEL 20 (184)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4689999999999987
No 234
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=94.11 E-value=0.023 Score=52.12 Aligned_cols=40 Identities=18% Similarity=0.241 Sum_probs=26.4
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~ 51 (225)
+|-++..+.|.+.+... -...+-++++||+|+|||++|..
T Consensus 127 vGR~~~l~~L~~~L~~~-----------~~~~~~v~I~G~~GiGKTtLa~~ 166 (591)
T 1z6t_A 127 VTRKKLVNAIQQKLSKL-----------KGEPGWVTIHGMAGCGKSVLAAE 166 (591)
T ss_dssp CCCHHHHHHHHHHHTTS-----------TTSCEEEEEECCTTSSHHHHHHH
T ss_pred cccHHHHHHHHHHHhcc-----------cCCCceEEEEcCCCCCHHHHHHH
Confidence 34555555555554431 12346788999999999999963
No 235
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.07 E-value=0.0068 Score=49.27 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=19.4
Q ss_pred CCCceeEEEcCCCCCCCcccccccC
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
++..-+.|.||+|+|||||++.++|
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4455667999999999999986555
No 236
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.05 E-value=0.008 Score=49.34 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=21.6
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||.|+|||||.+.++|.
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 344455679999999999999988874
No 237
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.05 E-value=0.008 Score=49.40 Aligned_cols=27 Identities=30% Similarity=0.279 Sum_probs=21.8
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||+|+|||||++.++|.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 344455779999999999999988874
No 238
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.02 E-value=0.0085 Score=48.34 Aligned_cols=23 Identities=30% Similarity=0.265 Sum_probs=19.9
Q ss_pred ceeEEEcCCCCCCCcccccccCC
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~ 55 (225)
.-+.|.||.|+|||||++.++|.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999988876
No 239
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.99 E-value=0.013 Score=45.27 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=22.0
Q ss_pred CCCceeEEEcCCCCCCCcccccccCCce
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
....-+++.|++|+|||+|+.+.++..+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3456899999999999999986665443
No 240
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.95 E-value=0.043 Score=47.59 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=25.2
Q ss_pred ccCChHHHHHc-CCCCCceeEEEcCCCCCCCcccc
Q psy7782 17 PLTHPEYYEEM-GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 17 ~l~~~~~~~~~-g~~~~~giLl~GppGtGKT~la~ 50 (225)
|...+++-.-+ |+.+..=+++.|+||+|||+||.
T Consensus 30 ~TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al 64 (338)
T 4a1f_A 30 PTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMM 64 (338)
T ss_dssp CCSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHH
T ss_pred cCCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHH
Confidence 34555555444 56666778999999999999984
No 241
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.94 E-value=0.0061 Score=48.45 Aligned_cols=21 Identities=48% Similarity=0.665 Sum_probs=17.0
Q ss_pred eeEEEcCCCCCCCcccccccC
Q psy7782 34 GVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~ 54 (225)
-+.|.||+|+||||+++.++|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 367899999999999875444
No 242
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.92 E-value=0.017 Score=49.83 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=19.7
Q ss_pred CCCceeEEEcCCCCCCCcccccccC
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
.++.-+.|.||+|+||||+++.+++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456678999999999999875544
No 243
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.92 E-value=0.012 Score=45.55 Aligned_cols=29 Identities=31% Similarity=0.241 Sum_probs=21.5
Q ss_pred CceeEEEcCCCCCCCccccccc------CCceeec
Q psy7782 32 PKGVILYGPPGTGKTLPFSPAL------GYHYYCR 60 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~------~~~~~~~ 60 (225)
..-+.|.|++|+||||+++..+ |.+++.+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~ 39 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 39 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 4557899999999999997433 5566544
No 244
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.88 E-value=0.007 Score=49.27 Aligned_cols=25 Identities=20% Similarity=0.110 Sum_probs=20.5
Q ss_pred CCceeEEEcCCCCCCCcccccccCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+..-+.|.||.|+|||||.+.++|.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3344678999999999999988884
No 245
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.83 E-value=0.0094 Score=49.74 Aligned_cols=26 Identities=15% Similarity=0.174 Sum_probs=20.9
Q ss_pred CCCceeEEEcCCCCCCCcccccccCC
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
.+..-+.|.||.|+|||||.+.++|.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 33344668999999999999988884
No 246
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.81 E-value=0.012 Score=55.05 Aligned_cols=18 Identities=44% Similarity=0.765 Sum_probs=15.1
Q ss_pred ceeEEEcCCCCCCCcccc
Q psy7782 33 KGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~ 50 (225)
.-.+++||||||||+++.
T Consensus 196 ~~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp SEEEEECCTTSCHHHHHH
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 356899999999999764
No 247
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.81 E-value=0.0085 Score=50.85 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=16.7
Q ss_pred CCceeEEEcCCCCCCCcccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~ 50 (225)
.+.-|.+.||+|+||||+++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~ 49 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSI 49 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 44556799999999999996
No 248
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.76 E-value=0.0069 Score=48.04 Aligned_cols=23 Identities=22% Similarity=0.158 Sum_probs=18.4
Q ss_pred CceeEEEcCCCCCCCcccccccC
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~ 54 (225)
+.-+.|.||+|+||||+++..++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 34567999999999999985555
No 249
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.68 E-value=0.015 Score=46.33 Aligned_cols=27 Identities=26% Similarity=0.353 Sum_probs=21.1
Q ss_pred ceeEEEcCCCCCCCcccc---cccCCceee
Q psy7782 33 KGVILYGPPGTGKTLPFS---PALGYHYYC 59 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~---~~~~~~~~~ 59 (225)
.-+.|.||||||||++++ ...|.++++
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~ 33 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVD 33 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence 358899999999999996 335666664
No 250
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.63 E-value=0.01 Score=48.90 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=21.7
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||.|+|||||.+.++|.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 344455779999999999999988874
No 251
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.61 E-value=0.0077 Score=52.81 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=19.5
Q ss_pred CceeEEEcCCCCCCCcccccccCC
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~ 55 (225)
..=+.|.||+|||||||.+.++|.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 334668999999999999877773
No 252
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.60 E-value=0.013 Score=50.01 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=18.5
Q ss_pred CceeEEEcCCCCCCCcccccccC
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~ 54 (225)
+.-+.|.||+||||||+++..++
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45677999999999999975544
No 253
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.58 E-value=0.0092 Score=49.22 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=21.5
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+ .-+.|.||+|+|||||.+.++|.
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 445 56679999999999999988884
No 254
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.53 E-value=0.0071 Score=52.08 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=19.2
Q ss_pred CCCceeEEEcCCCCCCCccccccc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~ 53 (225)
.+++-+++.||+|+||||++...+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA 126 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMA 126 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456678899999999999886443
No 255
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.52 E-value=0.012 Score=49.39 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=21.3
Q ss_pred CCCceeEEEcCCCCCCCcccccccCC
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
.+..-+.|.||.|+|||||++.++|.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34445679999999999999988884
No 256
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.52 E-value=0.012 Score=47.73 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=20.8
Q ss_pred CCceeEEEcCCCCCCCcccccccCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+..-+.|.||.|+|||||.+.++|.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3445678999999999999988884
No 257
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.47 E-value=0.012 Score=49.11 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=22.2
Q ss_pred CCCCceeEEEcCCCCCCCcccccccCC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+.+..-+.|.||.|+|||||++.++|.
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 344455779999999999999988885
No 258
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.47 E-value=0.015 Score=52.21 Aligned_cols=17 Identities=41% Similarity=0.577 Sum_probs=15.5
Q ss_pred eeEEEcCCCCCCCcccc
Q psy7782 34 GVILYGPPGTGKTLPFS 50 (225)
Q Consensus 34 giLl~GppGtGKT~la~ 50 (225)
.+++.||||||||+++.
T Consensus 47 ~~li~G~aGTGKT~ll~ 63 (459)
T 3upu_A 47 HVTINGPAGTGATTLTK 63 (459)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 88999999999999874
No 259
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.46 E-value=0.012 Score=49.24 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=20.9
Q ss_pred CCCceeEEEcCCCCCCCcccccccCC
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
.+..-+.|.||.|+|||||++.++|.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 33344679999999999999988884
No 260
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.46 E-value=0.0089 Score=49.70 Aligned_cols=24 Identities=25% Similarity=0.546 Sum_probs=20.0
Q ss_pred CceeEEEcCCCCCCCcccccccCC
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~ 55 (225)
..-+.|.||.|+|||||.+.++|.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 334679999999999999988884
No 261
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.40 E-value=0.009 Score=46.83 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=19.5
Q ss_pred ceeEEEcCCCCCCCcccccccCCc
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~ 56 (225)
--+.|.||+|+|||+|.+..++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 357899999999999998666543
No 262
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.38 E-value=0.02 Score=51.21 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=19.7
Q ss_pred CCCCCceeEEEcCCCCCCCcccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~ 50 (225)
|+.+..=+++.|+||+|||++|.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal 218 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFAL 218 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHH
T ss_pred CcCCCcEEEEEeCCCCCHHHHHH
Confidence 56676778999999999999984
No 263
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.36 E-value=0.011 Score=52.37 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=20.0
Q ss_pred CCceeEEEcCCCCCCCcccccccCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
...=+-|.||+|||||||.+.++|.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcC
Confidence 3334568999999999999877773
No 264
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.36 E-value=0.012 Score=51.66 Aligned_cols=25 Identities=36% Similarity=0.442 Sum_probs=19.9
Q ss_pred CCceeEEEcCCCCCCCcccccccCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
...-+.|.||+|||||||.+.++|.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCC
Confidence 3344668999999999999877773
No 265
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.35 E-value=0.012 Score=51.66 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=19.5
Q ss_pred CceeEEEcCCCCCCCcccccccCC
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~ 55 (225)
..-+.|.||+|||||||.+.++|.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 334568999999999999877774
No 266
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.34 E-value=0.013 Score=49.31 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=20.1
Q ss_pred CceeEEEcCCCCCCCcccccccCC
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~ 55 (225)
..-+.|.||.|+|||||++.++|.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 344678999999999999988884
No 267
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.33 E-value=0.015 Score=43.81 Aligned_cols=26 Identities=38% Similarity=0.395 Sum_probs=19.9
Q ss_pred ceeEEEcCCCCCCCcccccccCCcee
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHYY 58 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~~ 58 (225)
--|++.|+||+|||+|+.+..+..+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~ 30 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQER 30 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC---
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCc
Confidence 46899999999999999877765554
No 268
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.33 E-value=0.012 Score=51.45 Aligned_cols=24 Identities=38% Similarity=0.476 Sum_probs=19.6
Q ss_pred CceeEEEcCCCCCCCcccccccCC
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~ 55 (225)
..-+.|.||+|||||||.+.++|.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 344568999999999999877774
No 269
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.32 E-value=0.028 Score=42.89 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=10.3
Q ss_pred CceeEEEcCCCCCCCcccccccCCce
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
.--|++.|++|+|||+|+.+..+..+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~ 33 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAF 33 (183)
T ss_dssp EEEEEEECCCCC--------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 34689999999999999987665443
No 270
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.31 E-value=0.012 Score=51.77 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=19.8
Q ss_pred CCceeEEEcCCCCCCCcccccccCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
...-+.|.||+|||||||.+.++|.
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcC
Confidence 3344668999999999999877773
No 271
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.30 E-value=0.013 Score=48.10 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=20.6
Q ss_pred CCceeEEEcCCCCCCCcccccccCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+..-+.|.||.|+|||||.+.++|.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3344679999999999999988884
No 272
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.28 E-value=0.011 Score=48.28 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=20.6
Q ss_pred CCceeEEEcCCCCCCCcccccccCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+..-+.|.||.|+|||||.+.++|.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4445679999999999999988774
No 273
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.27 E-value=0.019 Score=46.61 Aligned_cols=29 Identities=21% Similarity=0.411 Sum_probs=21.7
Q ss_pred CCceeEEEcCCCCCCCcccccc---cCCceee
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPA---LGYHYYC 59 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~---~~~~~~~ 59 (225)
.+.-|.|.||+|||||++++.. .|.++++
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 3456789999999999999743 4566653
No 274
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.27 E-value=0.014 Score=45.11 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.1
Q ss_pred eeEEEcCCCCCCCcccccccCC
Q psy7782 34 GVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~~ 55 (225)
-+++.|+||+|||+|+...++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999877763
No 275
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=93.23 E-value=0.046 Score=42.59 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=21.6
Q ss_pred ceeEEEcCCCCCCCcccccccCCcee
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHYY 58 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~~ 58 (225)
--|++.|++|+|||+|+.+..+..+.
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~~~ 59 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDTYT 59 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCCCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46899999999999999887775543
No 276
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.22 E-value=0.011 Score=48.86 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=20.8
Q ss_pred CCceeEEEcCCCCCCCcccccccCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+..-+.|.||+|+|||||++.++|.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3445679999999999999988885
No 277
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.19 E-value=0.014 Score=48.82 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=21.2
Q ss_pred CCCceeEEEcCCCCCCCcccccccCC
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
.+..-+.|.||.|+|||||.+.++|.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34445679999999999999988884
No 278
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.19 E-value=0.021 Score=48.53 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=17.5
Q ss_pred CCceeEEEcCCCCCCCccccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~ 51 (225)
.++-++|.||+|+||||++..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~ 124 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAK 124 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 456688999999999998863
No 279
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.19 E-value=0.012 Score=48.91 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=20.8
Q ss_pred CCceeEEEcCCCCCCCcccccccCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+..-+.|.||.|+|||||.+.++|.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3445679999999999999988885
No 280
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.18 E-value=0.022 Score=51.11 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.0
Q ss_pred CCCCCceeEEEcCCCCCCCcccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~ 50 (225)
|+.+..=+++.||||+|||+|+.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l 221 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFAL 221 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHH
Confidence 57777778999999999999985
No 281
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.17 E-value=0.018 Score=53.50 Aligned_cols=19 Identities=42% Similarity=0.623 Sum_probs=16.3
Q ss_pred CceeEEEcCCCCCCCcccc
Q psy7782 32 PKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~ 50 (225)
.+-+++.||||||||+++.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~ 222 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTK 222 (574)
T ss_dssp CSEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHH
Confidence 4567899999999999874
No 282
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.13 E-value=0.014 Score=48.51 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=21.2
Q ss_pred CCCceeEEEcCCCCCCCcccccccCC
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
.+..-+.|.||.|+|||||.+.++|.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 34445679999999999999988885
No 283
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.13 E-value=0.014 Score=51.43 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=20.0
Q ss_pred CCceeEEEcCCCCCCCcccccccCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
...-+.|.||+|||||||.+.++|.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcC
Confidence 3344668999999999999877774
No 284
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.11 E-value=0.0099 Score=46.47 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=19.5
Q ss_pred eeEEEcCCCCCCCcccccccCCce
Q psy7782 34 GVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~~~~ 57 (225)
-+.|.||+|+|||+|++..++..+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 578999999999999986666443
No 285
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.10 E-value=0.013 Score=49.05 Aligned_cols=26 Identities=27% Similarity=0.439 Sum_probs=21.8
Q ss_pred CCCceeEEEcCCCCCCCcccccccCC
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
.+..-+.|.||.|+|||||++.++|.
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34445679999999999999999996
No 286
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.09 E-value=0.019 Score=47.15 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=19.9
Q ss_pred CCceeEEEcCCCCCCCccccc---ccCCc
Q psy7782 31 PPKGVILYGPPGTGKTLPFSP---ALGYH 56 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~---~~~~~ 56 (225)
.+.-|.|.||||+||||+|+. ..|.+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 345688999999999999972 25655
No 287
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.07 E-value=0.027 Score=48.90 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=20.7
Q ss_pred ceeEEEcCCCCCCCcccc---cccCCceee
Q psy7782 33 KGVILYGPPGTGKTLPFS---PALGYHYYC 59 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~---~~~~~~~~~ 59 (225)
+-|+|.||+|+|||+++. ...+.++++
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs 70 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVIN 70 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEc
Confidence 468899999999999986 344555654
No 288
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.06 E-value=0.014 Score=52.45 Aligned_cols=20 Identities=35% Similarity=0.494 Sum_probs=17.0
Q ss_pred CceeEEEcCCCCCCCccccc
Q psy7782 32 PKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~ 51 (225)
++-+++.||+|+||||++..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~k 116 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGK 116 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 56678999999999998753
No 289
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.04 E-value=0.015 Score=43.58 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=19.3
Q ss_pred eeEEEcCCCCCCCcccccccCCce
Q psy7782 34 GVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~~~~ 57 (225)
-+++.|+||+|||+|+.+..+..+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 588999999999999987776544
No 290
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.03 E-value=0.012 Score=48.10 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=16.7
Q ss_pred eEEEcCCCCCCCcccccccC
Q psy7782 35 VILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~~~ 54 (225)
+-|.||+|+||||+++..++
T Consensus 28 igI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 28 IGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999985544
No 291
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.03 E-value=0.016 Score=48.15 Aligned_cols=25 Identities=40% Similarity=0.546 Sum_probs=21.1
Q ss_pred ceeEEEcCCCCCCCcccccccCCce
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
..+.|.|+||+|||+|+.+.+|..+
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCE
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4689999999999999987777554
No 292
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.03 E-value=0.017 Score=43.73 Aligned_cols=27 Identities=15% Similarity=0.210 Sum_probs=20.9
Q ss_pred CceeEEEcCCCCCCCcccccccCCcee
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYHYY 58 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~~~ 58 (225)
.--|++.|+||+|||+|+.+..+..+.
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~~ 35 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTFS 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 346899999999999999877765544
No 293
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.02 E-value=0.016 Score=48.48 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=20.4
Q ss_pred CCceeEEEcCCCCCCCcccccccCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+..-+-|.||.|+|||||++.++|.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3444668999999999999988884
No 294
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.93 E-value=0.022 Score=58.99 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=26.6
Q ss_pred CChHHHHHcC---CCCCceeEEEcCCCCCCCcccc
Q psy7782 19 THPEYYEEMG---IKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 19 ~~~~~~~~~g---~~~~~giLl~GppGtGKT~la~ 50 (225)
..+++-.-+| +++.+-++++||||+|||+||.
T Consensus 367 Gi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaL 401 (1706)
T 3cmw_A 367 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTL 401 (1706)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHH
T ss_pred CcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHH
Confidence 4667777775 7788889999999999999984
No 295
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.92 E-value=0.013 Score=49.33 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=20.3
Q ss_pred CCceeEEEcCCCCCCCcccccccCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+..-+.|.||.|+|||||.+.++|.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3344679999999999999988874
No 296
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.87 E-value=0.012 Score=48.75 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=21.3
Q ss_pred CCceeEEEcCCCCCCCcccccccCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+..-+.|.||.|+|||||++.++|.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3445679999999999999999996
No 297
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.87 E-value=0.018 Score=51.89 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=17.2
Q ss_pred CCceeEEEcCCCCCCCcccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~ 50 (225)
++.-+++.||||+||||++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHH
Confidence 35678999999999999875
No 298
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.85 E-value=0.016 Score=53.11 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=20.9
Q ss_pred CCCceeEEEcCCCCCCCcccccccC
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
.....+++.||+|+||||+++++++
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGG
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3456799999999999999986665
No 299
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=92.81 E-value=0.014 Score=48.48 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=20.5
Q ss_pred CCceeEEEcCCCCCCCcccccccCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+..-+.|.||.|+|||||.+.++|.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3445679999999999999988874
No 300
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.76 E-value=0.026 Score=61.53 Aligned_cols=34 Identities=29% Similarity=0.541 Sum_probs=25.0
Q ss_pred CCceeEEEcCCCCCCCcccc----cccCCceeeccCCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFS----PALGYHYYCRGAGS 64 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~----~~~~~~~~~~~~~~ 64 (225)
..+++||.||||||||++++ ...+.+++.++.+.
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~ 1340 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSS 1340 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCT
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeC
Confidence 45799999999999998764 33345566666665
No 301
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.75 E-value=0.016 Score=43.86 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=20.0
Q ss_pred eeEEEcCCCCCCCcccccccCCce
Q psy7782 34 GVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~~~~ 57 (225)
-+.|.|+||+|||+|..+.++..+
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 578999999999999987776443
No 302
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.75 E-value=0.026 Score=45.93 Aligned_cols=19 Identities=32% Similarity=0.518 Sum_probs=15.9
Q ss_pred CceeEEEcCCCCCCCcccc
Q psy7782 32 PKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~ 50 (225)
..=|.|.||||+||||+++
T Consensus 26 g~~i~i~G~~GsGKsT~~~ 44 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVIN 44 (229)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 3456789999999999986
No 303
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.73 E-value=0.0073 Score=47.79 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=14.7
Q ss_pred eEEEcCCCCCCCcccc
Q psy7782 35 VILYGPPGTGKTLPFS 50 (225)
Q Consensus 35 iLl~GppGtGKT~la~ 50 (225)
|.|.||||+||||+++
T Consensus 3 I~i~G~~GsGKsTl~~ 18 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVE 18 (214)
T ss_dssp EEEEEEEEEEHHHHHH
T ss_pred EEEEcCCCCCHHHHHH
Confidence 6789999999999996
No 304
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.72 E-value=0.01 Score=51.76 Aligned_cols=26 Identities=31% Similarity=0.600 Sum_probs=20.5
Q ss_pred CCCceeEEEcCCCCCCCcccccccCC
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
....-+.|.||+|||||||.+.++|.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcC
Confidence 33344668999999999999877774
No 305
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.68 E-value=0.031 Score=58.77 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=29.4
Q ss_pred cccCChHHHHHcC---CCCCceeEEEcCCCCCCCcccc
Q psy7782 16 LPLTHPEYYEEMG---IKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 16 ~~l~~~~~~~~~g---~~~~~giLl~GppGtGKT~la~ 50 (225)
.|...+++..-+| +.+.+-++++||||+|||+||.
T Consensus 364 I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaL 401 (2050)
T 3cmu_A 364 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTL 401 (2050)
T ss_dssp ECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHH
T ss_pred eeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHH
Confidence 4446778887775 8889999999999999999984
No 306
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.68 E-value=0.017 Score=45.64 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=19.4
Q ss_pred CCceeEEEcCCCCCCCcccccccC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~ 54 (225)
....+++.|++|+|||+|+.+.++
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999965444
No 307
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.66 E-value=0.016 Score=49.60 Aligned_cols=24 Identities=17% Similarity=0.077 Sum_probs=18.2
Q ss_pred CCceeEEEcCCCCCCCcccccccC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~ 54 (225)
.+.=+-|.||+|+||||+++.++|
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 334456899999999999974444
No 308
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.65 E-value=0.019 Score=47.96 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=21.0
Q ss_pred CceeEEEcCCCCCCCcccccccCCc
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~ 56 (225)
..-+.|.||.|+|||||.+.++|..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3446799999999999999888863
No 309
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.60 E-value=0.024 Score=46.33 Aligned_cols=17 Identities=29% Similarity=0.266 Sum_probs=14.0
Q ss_pred eeEEEcCCCCCCCcccc
Q psy7782 34 GVILYGPPGTGKTLPFS 50 (225)
Q Consensus 34 giLl~GppGtGKT~la~ 50 (225)
=++++||||+|||+++.
T Consensus 14 i~litG~mGsGKTT~ll 30 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELI 30 (223)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 34678999999999773
No 310
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.60 E-value=0.015 Score=45.49 Aligned_cols=33 Identities=12% Similarity=0.201 Sum_probs=21.0
Q ss_pred HHcCCCCCceeEEEcCCCCCCCcccccccCCce
Q psy7782 25 EEMGIKPPKGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 25 ~~~g~~~~~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
+.+.-...--|++.|++|+|||+|+.+..+..+
T Consensus 21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~ 53 (199)
T 2p5s_A 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEF 53 (199)
T ss_dssp -------CEEEEEESSTTSSHHHHHHHHHHCCC
T ss_pred CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCC
Confidence 333334456889999999999999976655443
No 311
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.59 E-value=0.024 Score=46.60 Aligned_cols=17 Identities=41% Similarity=0.597 Sum_probs=15.1
Q ss_pred ceeEEEcCCCCCCCccc
Q psy7782 33 KGVILYGPPGTGKTLPF 49 (225)
Q Consensus 33 ~giLl~GppGtGKT~la 49 (225)
-.+++.|+||||||+++
T Consensus 7 l~I~~~~kgGvGKTt~a 23 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAM 23 (228)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCcHHHHH
Confidence 35899999999999986
No 312
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=92.56 E-value=0.024 Score=54.66 Aligned_cols=17 Identities=47% Similarity=0.821 Sum_probs=14.6
Q ss_pred eeEEEcCCCCCCCcccc
Q psy7782 34 GVILYGPPGTGKTLPFS 50 (225)
Q Consensus 34 giLl~GppGtGKT~la~ 50 (225)
-.+++||||||||+++.
T Consensus 373 ~~lI~GppGTGKT~ti~ 389 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSA 389 (800)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 46899999999999764
No 313
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.53 E-value=0.033 Score=42.40 Aligned_cols=27 Identities=19% Similarity=0.137 Sum_probs=22.9
Q ss_pred CCceeEEEcCCCCCCCcccccccCCce
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
...-+++.|++|+|||+|..+..+..+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~ 43 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEV 43 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCc
Confidence 456899999999999999988777665
No 314
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.52 E-value=0.017 Score=51.52 Aligned_cols=25 Identities=36% Similarity=0.790 Sum_probs=19.2
Q ss_pred CCCce-eEEEcCCCCCCCcccccccC
Q psy7782 30 KPPKG-VILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 30 ~~~~g-iLl~GppGtGKT~la~~~~~ 54 (225)
..+.| +++.||+|+||||+.+++++
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHH
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHh
Confidence 34455 57999999999999875544
No 315
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.51 E-value=0.025 Score=52.82 Aligned_cols=19 Identities=37% Similarity=0.602 Sum_probs=15.7
Q ss_pred CceeEEEcCCCCCCCcccc
Q psy7782 32 PKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~ 50 (225)
.+-+++.||||||||+++.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVA 182 (608)
T ss_dssp BSEEEEECCTTSTHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHH
Confidence 3568999999999998653
No 316
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.50 E-value=0.017 Score=43.01 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=20.5
Q ss_pred ceeEEEcCCCCCCCcccccccCCce
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
..+++.|++|+|||+|+.+..+..+
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~ 29 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEF 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcc
Confidence 4689999999999999986665544
No 317
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.50 E-value=0.019 Score=42.97 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=19.9
Q ss_pred eeEEEcCCCCCCCcccccccCCce
Q psy7782 34 GVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~~~~ 57 (225)
-|++.|++|+|||+|+.+..+..+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~ 28 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGTF 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 588999999999999987666443
No 318
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.48 E-value=0.027 Score=46.42 Aligned_cols=22 Identities=18% Similarity=0.117 Sum_probs=17.8
Q ss_pred CCceeEEEcCCCCCCCcccccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~ 52 (225)
.+.=|.|.|++|+||||+++..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L 44 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNIL 44 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTT
T ss_pred CceEEEEECCCCCCHHHHHHHH
Confidence 3456789999999999998743
No 319
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.47 E-value=0.02 Score=52.34 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=20.4
Q ss_pred CCCCCceeEEEcCCCCCCCccccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~~ 51 (225)
++.+..-++|.||+|||||||++.
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~ 58 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQ 58 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHH
Confidence 455667789999999999999986
No 320
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.47 E-value=0.014 Score=43.60 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=19.5
Q ss_pred ceeEEEcCCCCCCCcccccccCCc
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~ 56 (225)
-.+++.|++|+|||+|+.+..+..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999997665543
No 321
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.46 E-value=0.018 Score=42.87 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=19.5
Q ss_pred ceeEEEcCCCCCCCcccccccCCce
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
-.+++.|+||+|||+|+.+..+..+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~ 28 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTF 28 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3589999999999999876554333
No 322
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.46 E-value=0.023 Score=43.63 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=20.8
Q ss_pred ceeEEEcCCCCCCCcccccccCCce
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
.-+.|.|++|+|||+|..+.++..+
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~ 32 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENV 32 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4688999999999999987776543
No 323
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.46 E-value=0.019 Score=43.15 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=18.4
Q ss_pred eeEEEcCCCCCCCcccccccCC
Q psy7782 34 GVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~~ 55 (225)
-+++.|+||+|||+|+.+.++.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999866553
No 324
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.46 E-value=0.017 Score=51.16 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=21.7
Q ss_pred CCCceeEEEcCCCCCCCcccccccCCc
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~~~~ 56 (225)
.+..-+.|.||+|||||||.+.++|..
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 344456789999999999999888853
No 325
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.42 E-value=0.028 Score=42.54 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=22.2
Q ss_pred CCceeEEEcCCCCCCCcccccccCCcee
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGYHYY 58 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~~~~ 58 (225)
...-|++.|++|+|||+|+.+..+..+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~ 34 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVT 34 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccc
Confidence 4567899999999999999866665443
No 326
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.37 E-value=0.032 Score=48.02 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=21.1
Q ss_pred CCceeEEEcCCCCCCCccccc---ccCCceee
Q psy7782 31 PPKGVILYGPPGTGKTLPFSP---ALGYHYYC 59 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~---~~~~~~~~ 59 (225)
.++-+++.||+|+|||++|.. ..+..+++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis 40 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELIS 40 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEE
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEe
Confidence 346788999999999999963 23444544
No 327
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.37 E-value=0.016 Score=42.91 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=19.5
Q ss_pred eeEEEcCCCCCCCcccccccCCce
Q psy7782 34 GVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~~~~ 57 (225)
.+++.|++|+|||+++.+..+..+
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~~ 28 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNHF 28 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 589999999999999976655443
No 328
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.34 E-value=0.016 Score=43.15 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=19.0
Q ss_pred eeEEEcCCCCCCCcccccccCCc
Q psy7782 34 GVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~~~ 56 (225)
-+++.|++|+|||+++.+..+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999997665543
No 329
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.30 E-value=0.02 Score=48.60 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=20.1
Q ss_pred CceeEEEcCCCCCCCcccccccCC
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~ 55 (225)
..-+.|.||.|+|||||.+.++|.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 344679999999999999988884
No 330
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=92.26 E-value=0.027 Score=54.36 Aligned_cols=17 Identities=47% Similarity=0.821 Sum_probs=14.6
Q ss_pred eeEEEcCCCCCCCcccc
Q psy7782 34 GVILYGPPGTGKTLPFS 50 (225)
Q Consensus 34 giLl~GppGtGKT~la~ 50 (225)
-.|++||||||||+++.
T Consensus 377 ~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred CEEEECCCCCCHHHHHH
Confidence 46899999999999764
No 331
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=92.24 E-value=0.058 Score=53.24 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=28.8
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~ 51 (225)
+|-++.++.|.+.+... -...+-+.++|++|.|||+||+.
T Consensus 127 vgR~~~~~~l~~~l~~~-----------~~~~~~v~i~G~gG~GKTtLa~~ 166 (1249)
T 3sfz_A 127 VTRKKLVHAIQQKLWKL-----------NGEPGWVTIYGMAGCGKSVLAAE 166 (1249)
T ss_dssp CCCHHHHHHHHHHHHTT-----------TTSCEEEEEECSTTSSHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhc-----------cCCCCEEEEEeCCCCCHHHHHHH
Confidence 46677777777776431 12345678999999999999963
No 332
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.22 E-value=0.02 Score=43.70 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=19.6
Q ss_pred eeEEEcCCCCCCCcccccccCCce
Q psy7782 34 GVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~~~~ 57 (225)
-|++.|++|+|||+|+.+..+..+
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~~ 29 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNHF 29 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 589999999999999976655444
No 333
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.19 E-value=0.017 Score=43.75 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=19.2
Q ss_pred ceeEEEcCCCCCCCcccccccCCc
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~ 56 (225)
-.+++.|+||+|||+|..+..+..
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999997555433
No 334
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.17 E-value=0.02 Score=47.03 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=19.1
Q ss_pred eeEEEcCCCCCCCccccc---ccCCceeec
Q psy7782 34 GVILYGPPGTGKTLPFSP---ALGYHYYCR 60 (225)
Q Consensus 34 giLl~GppGtGKT~la~~---~~~~~~~~~ 60 (225)
.+-|.||||+||||+|+. ..|.+.++.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 345779999999999973 345555543
No 335
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.17 E-value=0.021 Score=49.19 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=20.3
Q ss_pred CCCceeEEEcCCCCCCCcccccccC
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
.+..-+++.||+|+||||+++.++|
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGG
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456789999999999999876555
No 336
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.17 E-value=0.017 Score=43.78 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=19.9
Q ss_pred CceeEEEcCCCCCCCcccccccCCc
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~ 56 (225)
.-.|++.|++|+|||+|+.+..+..
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3578999999999999997555433
No 337
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.16 E-value=0.018 Score=44.44 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=16.3
Q ss_pred eeEEEcCCCCCCCccccccc
Q psy7782 34 GVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~ 53 (225)
=.+|+||.|+|||+++.++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 34699999999999987543
No 338
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=92.15 E-value=0.066 Score=49.08 Aligned_cols=42 Identities=19% Similarity=0.188 Sum_probs=29.0
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCccccccc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~ 53 (225)
|-++.++.|.+.+... +-...+-+.++|++|.|||+||...+
T Consensus 132 GR~~~~~~l~~~L~~~----------~~~~~~vv~I~G~gGvGKTtLA~~v~ 173 (549)
T 2a5y_B 132 IREYHVDRVIKKLDEM----------CDLDSFFLFLHGRAGSGKSVIASQAL 173 (549)
T ss_dssp CCHHHHHHHHHHHHHH----------TTSSSEEEEEECSTTSSHHHHHHHHH
T ss_pred CchHHHHHHHHHHhcc----------cCCCceEEEEEcCCCCCHHHHHHHHH
Confidence 5666677776666331 11234678899999999999997444
No 339
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.15 E-value=0.037 Score=43.33 Aligned_cols=22 Identities=23% Similarity=0.075 Sum_probs=18.0
Q ss_pred CCceeEEEcCCCCCCCcccccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~ 52 (225)
...-+.+.||+|+|||+++..+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l 26 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKL 26 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHH
Confidence 3457889999999999998643
No 340
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.14 E-value=0.017 Score=43.22 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=18.6
Q ss_pred eeEEEcCCCCCCCcccccccCCc
Q psy7782 34 GVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~~~ 56 (225)
.+++.|++|+|||+|+.+..+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999987554433
No 341
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.09 E-value=0.015 Score=53.22 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=21.4
Q ss_pred CCCCCceeEEEcCCCCCCCcccccccC
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
++.+..-+++.||||+|||+|++..++
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g 303 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVE 303 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 566666789999999999999974443
No 342
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.09 E-value=0.018 Score=43.19 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=19.9
Q ss_pred ceeEEEcCCCCCCCcccccccCCce
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
-.+++.|++|+|||+|+.+..+..+
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~ 31 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSF 31 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC
Confidence 3689999999999999976655443
No 343
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.09 E-value=0.016 Score=43.49 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=19.7
Q ss_pred ceeEEEcCCCCCCCcccccccCCce
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
-.+++.|++|+|||+|+.+..+..+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~ 28 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKF 28 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCC
Confidence 3589999999999999976555443
No 344
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.05 E-value=0.011 Score=51.72 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=20.3
Q ss_pred CCCceeEEEcCCCCCCCcccccccCC
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
....-+.|.||+|||||||.+.++|.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 33344669999999999999877773
No 345
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.03 E-value=0.028 Score=50.36 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=17.1
Q ss_pred CceeEEEcCCCCCCCccccc
Q psy7782 32 PKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~ 51 (225)
++-+++.||||+||||++.+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~ 118 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAK 118 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45789999999999998853
No 346
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.93 E-value=0.019 Score=43.07 Aligned_cols=24 Identities=25% Similarity=0.117 Sum_probs=19.2
Q ss_pred ceeEEEcCCCCCCCcccccccCCc
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~ 56 (225)
-.+++.|++|+|||+|+.+..+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999997555433
No 347
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.92 E-value=0.036 Score=43.12 Aligned_cols=36 Identities=14% Similarity=0.054 Sum_probs=25.3
Q ss_pred HHHHcCCCCCceeEEEcCCCCCCCcccccccCCcee
Q psy7782 23 YYEEMGIKPPKGVILYGPPGTGKTLPFSPALGYHYY 58 (225)
Q Consensus 23 ~~~~~g~~~~~giLl~GppGtGKT~la~~~~~~~~~ 58 (225)
+++.+--...--|++.|+||+|||+|+.+..+..+.
T Consensus 20 ~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~ 55 (192)
T 2b6h_A 20 LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIV 55 (192)
T ss_dssp GGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCE
T ss_pred HHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCcc
Confidence 333333234457899999999999999877665544
No 348
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.86 E-value=0.016 Score=50.49 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=21.5
Q ss_pred CCCCceeEEEcCCCCCCCcccccccC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
+.+..-+++.||+|+||||+++.+++
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHT
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHh
Confidence 45667889999999999999986655
No 349
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.83 E-value=0.036 Score=49.74 Aligned_cols=32 Identities=25% Similarity=0.180 Sum_probs=23.3
Q ss_pred CChHHHHHc-CCCCCceeEEEcCCCCCCCcccc
Q psy7782 19 THPEYYEEM-GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 19 ~~~~~~~~~-g~~~~~giLl~GppGtGKT~la~ 50 (225)
..+++-.-+ |+.+..=+++.|+||+|||++|-
T Consensus 183 G~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal 215 (444)
T 3bgw_A 183 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFAL 215 (444)
T ss_dssp SCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHH
T ss_pred CcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHH
Confidence 344444333 56666778999999999999984
No 350
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.82 E-value=0.02 Score=43.32 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=19.3
Q ss_pred ceeEEEcCCCCCCCcccccccCCc
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~ 56 (225)
--+++.|+||+|||+|+.+..+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhCc
Confidence 468999999999999997655533
No 351
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.70 E-value=0.047 Score=46.12 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=12.4
Q ss_pred eeEEEcCCCCCCCcccc
Q psy7782 34 GVILYGPPGTGKTLPFS 50 (225)
Q Consensus 34 giLl~GppGtGKT~la~ 50 (225)
=|.+.||+|+||||+|+
T Consensus 7 iIgItG~sGSGKSTva~ 23 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKH 23 (290)
T ss_dssp EEEEESCC---CCTHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47799999999999997
No 352
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.70 E-value=0.03 Score=43.20 Aligned_cols=28 Identities=14% Similarity=0.150 Sum_probs=21.6
Q ss_pred CCceeEEEcCCCCCCCcccccccCCcee
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGYHYY 58 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~~~~ 58 (225)
...-+++.|++|+|||+|..+..+..+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~ 49 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNL 49 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 4567999999999999999877776543
No 353
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.68 E-value=0.025 Score=43.04 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=21.1
Q ss_pred CceeEEEcCCCCCCCcccccccCCce
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
...|++.|++|+|||+|+.+..+..+
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~ 43 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEF 43 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCC
Confidence 35789999999999999986665544
No 354
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.67 E-value=0.033 Score=43.03 Aligned_cols=29 Identities=17% Similarity=0.146 Sum_probs=22.0
Q ss_pred CCceeEEEcCCCCCCCcccccccCCceee
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGYHYYC 59 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~~~~~ 59 (225)
...-|++.|++|+|||+|+.+..+..+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~ 44 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSS 44 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC---
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 34578999999999999998777766554
No 355
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=91.65 E-value=0.044 Score=43.20 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=21.4
Q ss_pred CceeEEEcCCCCCCCcccccccCCce
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
.--|++.|++|+|||+|+.+.++..+
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~~~ 36 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDGRF 36 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTCST
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34789999999999999988776443
No 356
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.65 E-value=0.035 Score=48.30 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=19.9
Q ss_pred ceeEEEcCCCCCCCccccc---ccCCceee
Q psy7782 33 KGVILYGPPGTGKTLPFSP---ALGYHYYC 59 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~---~~~~~~~~ 59 (225)
.-|.+.||+|+|||++|.. ..+..+++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis 37 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIIS 37 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEE
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceec
Confidence 4678999999999999963 33444444
No 357
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.64 E-value=0.042 Score=49.19 Aligned_cols=23 Identities=17% Similarity=0.431 Sum_probs=20.0
Q ss_pred eEEEcCCCCCCCcccccccCCce
Q psy7782 35 VILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~~~~~~ 57 (225)
+.|.||+|+|||||.+.++|..+
T Consensus 45 vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTSCC
T ss_pred EEEECCCCCCHHHHHHHHhCccc
Confidence 67999999999999998888743
No 358
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.62 E-value=0.023 Score=43.52 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=19.9
Q ss_pred eeEEEcCCCCCCCcccccccCCce
Q psy7782 34 GVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~~~~ 57 (225)
-+++.|++|+|||+|+.+..+..+
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~ 26 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKV 26 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcCC
Confidence 478999999999999987766553
No 359
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=91.60 E-value=0.039 Score=47.41 Aligned_cols=19 Identities=37% Similarity=0.434 Sum_probs=17.3
Q ss_pred CceeEEEcCCCCCCCcccc
Q psy7782 32 PKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~ 50 (225)
.+|+||.||+|+|||++|.
T Consensus 147 g~gvli~G~sG~GKStlal 165 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECAL 165 (312)
T ss_dssp TEEEEEEESSSSSHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHH
Confidence 5899999999999999884
No 360
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.57 E-value=0.034 Score=47.91 Aligned_cols=19 Identities=16% Similarity=0.065 Sum_probs=15.8
Q ss_pred ceeEEEcCCCCCCCccccc
Q psy7782 33 KGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~ 51 (225)
.=+-|.||+||||||+++.
T Consensus 93 ~iigI~GpsGSGKSTl~~~ 111 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRV 111 (321)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 3466889999999999973
No 361
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.56 E-value=0.028 Score=43.78 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=19.5
Q ss_pred ceeEEEcCCCCCCCcccccccCCc
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~ 56 (225)
-.|++.|++|+|||+|+.+..+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999997555543
No 362
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=91.55 E-value=0.032 Score=46.22 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=21.0
Q ss_pred ceeEEEcCCCCCCCcccccccCCcee
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHYY 58 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~~ 58 (225)
.-++|.|+||+|||+|+.+.+|..+.
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~ 31 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQY 31 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCc
Confidence 35889999999999999877765543
No 363
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.55 E-value=0.021 Score=42.61 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=19.2
Q ss_pred ceeEEEcCCCCCCCcccccccCCc
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~ 56 (225)
-.+++.|++|+|||+|+.+..+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999997655433
No 364
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.52 E-value=0.051 Score=41.78 Aligned_cols=26 Identities=19% Similarity=0.218 Sum_probs=21.4
Q ss_pred CceeEEEcCCCCCCCcccccccCCce
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
..-+++.|+||+|||+|..+..+..+
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~ 41 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDI 41 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45789999999999999987776543
No 365
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.52 E-value=0.02 Score=48.77 Aligned_cols=22 Identities=14% Similarity=0.071 Sum_probs=17.2
Q ss_pred ceeEEEcCCCCCCCcccccccC
Q psy7782 33 KGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~ 54 (225)
.-+-|.||+|+||||+++.+++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999974433
No 366
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=91.51 E-value=0.022 Score=43.59 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=18.6
Q ss_pred ceeEEEcCCCCCCCcccccccC
Q psy7782 33 KGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~ 54 (225)
-.|++.|++|+|||+|+.+..+
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999975554
No 367
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.51 E-value=0.017 Score=50.25 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=19.4
Q ss_pred CceeEEEcCCCCCCCcccccccC
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~ 54 (225)
..-+.|.||+|||||||++.++|
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 45678999999999999986665
No 368
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.48 E-value=0.03 Score=45.34 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=21.6
Q ss_pred CceeEEEcCCCCCCCcccccccCCcee
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYHYY 58 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~~~ 58 (225)
..-|+|.|++|+|||+|+.+.+|..++
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~~ 55 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKVF 55 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCcC
Confidence 357899999999999999866665543
No 369
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=91.48 E-value=0.043 Score=42.56 Aligned_cols=23 Identities=22% Similarity=0.118 Sum_probs=4.9
Q ss_pred ceeEEEcCCCCCCCcccccccCC
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~ 55 (225)
--|++.|++|+|||+|+.+..+.
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47899999999999999877765
No 370
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.42 E-value=0.027 Score=41.98 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=19.4
Q ss_pred eeEEEcCCCCCCCcccccccCCce
Q psy7782 34 GVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~~~~ 57 (225)
.+++.|++|+|||+|+.+..+..+
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~~ 28 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGIF 28 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 588999999999999976655433
No 371
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.40 E-value=0.021 Score=43.16 Aligned_cols=24 Identities=17% Similarity=0.166 Sum_probs=19.3
Q ss_pred ceeEEEcCCCCCCCcccccccCCc
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~ 56 (225)
--|++.|++|+|||+|+.+..+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999997655433
No 372
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.40 E-value=0.031 Score=50.72 Aligned_cols=23 Identities=9% Similarity=0.082 Sum_probs=19.8
Q ss_pred CCCCCceeEEEcCCCCCCCcccc
Q psy7782 28 GIKPPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 28 g~~~~~giLl~GppGtGKT~la~ 50 (225)
|+.+..-+++.|+||+|||++|.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal 260 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVR 260 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHH
Confidence 56677778999999999999884
No 373
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.38 E-value=0.02 Score=48.03 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=17.2
Q ss_pred eeEEEcCCCCCCCcccccccC
Q psy7782 34 GVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~ 54 (225)
.+.|.||+|+|||||.+.++|
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 467889999999999875555
No 374
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.36 E-value=0.024 Score=43.60 Aligned_cols=25 Identities=16% Similarity=0.112 Sum_probs=19.9
Q ss_pred CceeEEEcCCCCCCCcccccccCCc
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~ 56 (225)
.--|++.|++|+|||+|+.+.++..
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3468999999999999997555543
No 375
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=91.34 E-value=0.037 Score=50.59 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=18.2
Q ss_pred CCceeEEEcCCCCCCCccccccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~ 53 (225)
.++-|++.|+||+||||++.+.+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999987555
No 376
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.33 E-value=0.028 Score=42.42 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=21.0
Q ss_pred CceeEEEcCCCCCCCcccccccCCce
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
.-.+++.|++|+|||+|+.+..+..+
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~ 40 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKF 40 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC
Confidence 45789999999999999976655444
No 377
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.29 E-value=0.024 Score=43.82 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=19.9
Q ss_pred ceeEEEcCCCCCCCcccccccCCce
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
-.|++.|++|+|||+|+.+..+..+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~ 50 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNEF 50 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC
Confidence 4789999999999999975555433
No 378
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.23 E-value=0.044 Score=47.23 Aligned_cols=18 Identities=39% Similarity=0.453 Sum_probs=15.7
Q ss_pred ceeEEEcCCCCCCCcccc
Q psy7782 33 KGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~ 50 (225)
+-+++.||+|+|||++|.
T Consensus 4 ~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCcCCHHHHHH
Confidence 357899999999999986
No 379
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.18 E-value=0.035 Score=42.55 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=20.9
Q ss_pred CceeEEEcCCCCCCCcccccccCCc
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~ 56 (225)
..-+++.|++|+|||+|+.+..+..
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 3478999999999999998776655
No 380
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=91.17 E-value=0.031 Score=41.93 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=21.0
Q ss_pred CCceeEEEcCCCCCCCcccccccCCce
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
....+++.|++|+|||+|+.+..+..+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~ 32 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEV 32 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345789999999999999976554443
No 381
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.15 E-value=0.043 Score=46.58 Aligned_cols=21 Identities=38% Similarity=0.506 Sum_probs=16.9
Q ss_pred CceeEEEcCCCCCCCcccccc
Q psy7782 32 PKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~ 52 (225)
+.-+++.||+|+|||+++...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~l 118 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKL 118 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 456778999999999988633
No 382
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.11 E-value=0.026 Score=42.83 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=19.2
Q ss_pred ceeEEEcCCCCCCCcccccccCCc
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~ 56 (225)
-.+++.|++|+|||+|+.+..+..
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999987555433
No 383
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.08 E-value=0.029 Score=43.14 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=20.3
Q ss_pred ceeEEEcCCCCCCCcccccccCCce
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
--|++.|++|+|||+|+.+.++..+
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~ 46 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHF 46 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC
Confidence 4689999999999999986665444
No 384
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.08 E-value=0.037 Score=43.28 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=19.7
Q ss_pred ceeEEEcCCCCCCCcccccccCC
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~ 55 (225)
--|++.|+||+|||+|+.+.++.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999877654
No 385
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.07 E-value=0.029 Score=43.94 Aligned_cols=26 Identities=15% Similarity=0.157 Sum_probs=20.2
Q ss_pred CceeEEEcCCCCCCCcccccccCCce
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
..-+++.|+||+|||+|..+..+-.+
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~ 50 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRL 50 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34689999999999999987766443
No 386
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=91.06 E-value=0.04 Score=43.91 Aligned_cols=26 Identities=15% Similarity=0.128 Sum_probs=21.7
Q ss_pred eeEEEcCCCCCCCcccc---cccCCceee
Q psy7782 34 GVILYGPPGTGKTLPFS---PALGYHYYC 59 (225)
Q Consensus 34 giLl~GppGtGKT~la~---~~~~~~~~~ 59 (225)
-|.+.||+|||||++++ ...|.+|++
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 57899999999999997 446788874
No 387
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.99 E-value=0.031 Score=43.29 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=20.1
Q ss_pred ceeEEEcCCCCCCCcccccccCCce
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
--|++.|++|+|||+|+.+..+..|
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~~ 46 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKRF 46 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEEECCCCCcHHHHHHHHHhCCC
Confidence 3689999999999999976655443
No 388
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=90.98 E-value=0.036 Score=46.37 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=20.3
Q ss_pred ceeEEEcCCCCCCCcccccccCCc
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~ 56 (225)
.-+.|.|+||+|||+|..+.+|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 357899999999999998777754
No 389
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.95 E-value=0.028 Score=50.01 Aligned_cols=41 Identities=15% Similarity=0.104 Sum_probs=27.0
Q ss_pred CCCCceeEEEcCCCCCCCccccccc------CCceeeccCCCCCCcc
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPAL------GYHYYCRGAGSNSDKK 69 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~------~~~~~~~~~~~~~~~~ 69 (225)
+....-++++||||||||++++.++ +..+..++++-|.+-+
T Consensus 171 i~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~ 217 (422)
T 3ice_A 171 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPE 217 (422)
T ss_dssp CBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHH
T ss_pred ecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChH
Confidence 3445678999999999999986332 2344555555553333
No 390
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.94 E-value=0.032 Score=42.54 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=20.3
Q ss_pred CceeEEEcCCCCCCCcccccccCCce
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
.--|++.|++|+|||+|+.+..+..+
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~~ 43 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKIF 43 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 34789999999999999976554433
No 391
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=90.94 E-value=0.025 Score=43.25 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=18.4
Q ss_pred ceeEEEcCCCCCCCcccccccC
Q psy7782 33 KGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~ 54 (225)
--|++.|++|+|||+|+.+..+
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999975544
No 392
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.92 E-value=0.03 Score=42.32 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=20.2
Q ss_pred ceeEEEcCCCCCCCcccccccCCce
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
..|++.|++|+|||+|+.+..+..+
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~~ 34 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSYF 34 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC
Confidence 4789999999999999976655443
No 393
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.91 E-value=0.031 Score=43.43 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=19.9
Q ss_pred CceeEEEcCCCCCCCcccccccCCc
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~ 56 (225)
.--|++.|++|+|||+|+.+..+..
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCC
Confidence 3578999999999999987555443
No 394
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=90.89 E-value=0.033 Score=51.03 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=17.6
Q ss_pred CceeEEEcCCCCCCCcccccc
Q psy7782 32 PKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~ 52 (225)
+.-|+|.|+||+|||++|+..
T Consensus 35 ~~lIvlvGlpGSGKSTia~~L 55 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKL 55 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 456789999999999999743
No 395
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.88 E-value=0.038 Score=42.28 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=21.5
Q ss_pred CCceeEEEcCCCCCCCcccccccCCc
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~~ 56 (225)
..-.+++.|+||+|||+|+.+..+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 45679999999999999998766644
No 396
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.87 E-value=0.03 Score=42.82 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=20.1
Q ss_pred ceeEEEcCCCCCCCcccccccCCc
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~ 56 (225)
.-+.|.|+||+|||+|..+.++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999998777654
No 397
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=90.86 E-value=0.051 Score=48.65 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=16.8
Q ss_pred CCceeEEEcCCCCCCCcccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~ 50 (225)
++.-+++.||+|+||||++.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~ 116 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAA 116 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45667889999999999875
No 398
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.86 E-value=0.029 Score=43.45 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=19.8
Q ss_pred ceeEEEcCCCCCCCcccccccCCce
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
--|++.|++|+|||+|+.+.++..|
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~~ 45 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGTY 45 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4789999999999999975554443
No 399
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.85 E-value=0.025 Score=43.45 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=20.2
Q ss_pred CceeEEEcCCCCCCCcccccccCCce
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
.--+++.|+||+|||+|+.+..+..+
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~ 32 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCF 32 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34689999999999999976555433
No 400
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.80 E-value=0.025 Score=48.42 Aligned_cols=26 Identities=27% Similarity=0.545 Sum_probs=21.0
Q ss_pred CCCceeEEEcCCCCCCCcccccccCC
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
.+..-+-|.||+|+|||||++.++|.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcC
Confidence 34455678999999999999977773
No 401
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.80 E-value=0.028 Score=43.31 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=20.1
Q ss_pred ceeEEEcCCCCCCCcccccccCCce
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
--|++.|++|+|||+|+.+..+..+
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~ 47 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDSF 47 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4789999999999999976555443
No 402
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=90.80 E-value=0.031 Score=49.09 Aligned_cols=25 Identities=16% Similarity=0.053 Sum_probs=20.0
Q ss_pred CCceeEEEcCCCCCCCcccccccCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+..-+-|.||+|+|||||.+.++|.
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcC
Confidence 3344568899999999999988774
No 403
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.79 E-value=0.04 Score=42.79 Aligned_cols=27 Identities=19% Similarity=0.356 Sum_probs=21.4
Q ss_pred CCceeEEEcCCCCCCCcccccccCCce
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
..-.|++.|++|+|||+|+.+..+..+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~ 53 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRF 53 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 345789999999999999976655444
No 404
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=90.75 E-value=0.045 Score=43.78 Aligned_cols=27 Identities=26% Similarity=0.285 Sum_probs=22.5
Q ss_pred CceeEEEcCCCCCCCcccccccCCcee
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYHYY 58 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~~~ 58 (225)
..-|++.|++|+|||+|+.+.++..+.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~ 55 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVD 55 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 357899999999999999877776654
No 405
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.74 E-value=0.029 Score=42.54 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=20.5
Q ss_pred CceeEEEcCCCCCCCcccccccCCce
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
.-.+++.|++|+|||+|+.+..+..+
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~ 35 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAF 35 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC
Confidence 34689999999999999976555444
No 406
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=90.74 E-value=0.042 Score=45.48 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=21.3
Q ss_pred ceeEEEcCCCCCCCcccccccCCcee
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHYY 58 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~~ 58 (225)
+-|.|.|+||+|||+|+.+..|..+.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~ 27 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQR 27 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Confidence 35889999999999999877776543
No 407
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.65 E-value=0.042 Score=42.60 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=19.3
Q ss_pred ceeEEEcCCCCCCCcccccccCCcee
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHYY 58 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~~ 58 (225)
-.|++.|++|+|||+|+.+..+..+.
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~~~ 52 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDTFC 52 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC----
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 35899999999999999877765543
No 408
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=90.60 E-value=0.045 Score=42.19 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=21.3
Q ss_pred CceeEEEcCCCCCCCcccccccCCc
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~ 56 (225)
.--|++.|++|+|||+|..+..+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999998777765
No 409
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.57 E-value=0.042 Score=43.31 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=19.6
Q ss_pred ceeEEEcCCCCCCCcccccccCCc
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~ 56 (225)
--|++.|++|+|||+|+.+..+..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999997665533
No 410
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.54 E-value=0.032 Score=42.47 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=20.0
Q ss_pred ceeEEEcCCCCCCCcccccccCCce
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
.-|++.|++|+|||+|+.+..+..+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~~ 31 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQF 31 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCC
Confidence 4689999999999999976654433
No 411
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=90.52 E-value=0.71 Score=30.46 Aligned_cols=47 Identities=19% Similarity=0.112 Sum_probs=40.0
Q ss_pred eeeEEEEEecCCeEEEEccCCCeEEEeecCCCCc--CCCCCCCeEEecC
Q psy7782 161 SVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDK--DQLEPGCSVLLNH 207 (225)
Q Consensus 161 ~vg~v~e~~d~~~~iV~~~~g~~~~v~v~~~vd~--~~L~pG~~V~ln~ 207 (225)
..|.|++.+..+.+.|...+|..+.+.+....-. -.+.+||+|.+..
T Consensus 8 ~~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~ 56 (71)
T 1ah9_A 8 MQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVEL 56 (71)
T ss_dssp CCEEEEEECSSSEEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCEE
T ss_pred EEEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCccCCCCCEEEEEE
Confidence 3699999999999999888899999999998765 5567899998853
No 412
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.49 E-value=0.031 Score=43.02 Aligned_cols=24 Identities=21% Similarity=0.229 Sum_probs=19.4
Q ss_pred ceeEEEcCCCCCCCcccccccCCc
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~ 56 (225)
--|++.|++|+|||+|+.+..+..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999997555433
No 413
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.43 E-value=0.033 Score=43.39 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=18.7
Q ss_pred CceeEEEcCCCCCCCcccccccC
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~ 54 (225)
.--|++.|++|+|||+|+.+..+
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVN 30 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHc
Confidence 35789999999999999865444
No 414
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.43 E-value=0.032 Score=42.86 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=18.3
Q ss_pred ceeEEEcCCCCCCCcccccccC
Q psy7782 33 KGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~ 54 (225)
--|++.|++|+|||+|+.+..+
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTD 37 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999875444
No 415
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.38 E-value=0.023 Score=43.12 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=20.4
Q ss_pred ceeEEEcCCCCCCCcccccccCCce
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
--+++.|+||+|||+|+.+.++..|
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~ 32 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSY 32 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC
Confidence 4689999999999999986665444
No 416
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.37 E-value=0.052 Score=43.87 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=18.0
Q ss_pred eeEEEcCCCCCCCcccccccCC
Q psy7782 34 GVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~~ 55 (225)
=+-|-||.|+||||+++..++.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 3568899999999999866654
No 417
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.35 E-value=0.047 Score=46.27 Aligned_cols=23 Identities=22% Similarity=0.143 Sum_probs=19.2
Q ss_pred ceeEEEcCCCCCCCcccccccCC
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~ 55 (225)
.-+.|.||+|+|||||.+.++|.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CeEEEECCCCCcHHHHHHHhccc
Confidence 44678999999999999877773
No 418
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.32 E-value=0.039 Score=41.94 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=17.7
Q ss_pred eeEEEcCCCCCCCcccccccC
Q psy7782 34 GVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~ 54 (225)
.|++.|++|+|||+|+.+..+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999965544
No 419
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=90.28 E-value=0.074 Score=42.99 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=16.0
Q ss_pred CceeEEEcCCCCCCCcccc
Q psy7782 32 PKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~ 50 (225)
.+-+++.||+|||||+++.
T Consensus 76 g~~~~i~g~TGsGKTt~~~ 94 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVP 94 (235)
T ss_dssp CSEEEEECCTTSSHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHH
Confidence 4678999999999998653
No 420
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.21 E-value=0.035 Score=42.78 Aligned_cols=24 Identities=21% Similarity=0.103 Sum_probs=19.5
Q ss_pred ceeEEEcCCCCCCCcccccccCCc
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~ 56 (225)
--|++.|++|+|||+|+.+..+..
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 478999999999999987655433
No 421
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.17 E-value=0.035 Score=43.46 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=20.2
Q ss_pred CCceeEEEcCCCCCCCcccccccCCc
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~~ 56 (225)
..--|++.|+||+|||+|+.+..+..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34578999999999999997555443
No 422
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.17 E-value=0.065 Score=45.35 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=17.8
Q ss_pred CCceeEEEcCCCCCCCccccccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~ 53 (225)
.++-+.+.||+|+||||++...+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la 119 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLA 119 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34567788999999999986433
No 423
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=90.16 E-value=0.1 Score=45.73 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=25.9
Q ss_pred CCceeEEEcCCCCCCCccccc------ccCCceeeccCCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSP------ALGYHYYCRGAGS 64 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~------~~~~~~~~~~~~~ 64 (225)
....+|++|++|||||++|++ ..+.+|+.++.+.
T Consensus 159 ~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~ 198 (387)
T 1ny5_A 159 AECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVAS 198 (387)
T ss_dssp CCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTT
T ss_pred CCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCC
Confidence 456789999999999999962 2346788777554
No 424
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.15 E-value=0.032 Score=43.22 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=19.6
Q ss_pred ceeEEEcCCCCCCCcccccccCCc
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~ 56 (225)
-.|++.|++|+|||+|+.+..+..
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999997655544
No 425
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=90.11 E-value=0.067 Score=49.11 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=17.1
Q ss_pred CceeEEEcCCCCCCCccccc
Q psy7782 32 PKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~ 51 (225)
...++|+||+|||||+|+..
T Consensus 225 g~~~~ffGlSGtGKTtLs~~ 244 (529)
T 1j3b_A 225 GDVAVFFGLSGTGKTTLSTD 244 (529)
T ss_dssp CCEEEEEECTTSCHHHHTCB
T ss_pred CcEEEEEccccCChhhHhhc
Confidence 35789999999999999863
No 426
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.11 E-value=0.045 Score=42.07 Aligned_cols=28 Identities=21% Similarity=0.118 Sum_probs=22.5
Q ss_pred CCceeEEEcCCCCCCCcccccccCCcee
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGYHYY 58 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~~~~ 58 (225)
..--|++.|++|+|||+|..+..+..+.
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~ 42 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV 42 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4467999999999999999877655444
No 427
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=90.08 E-value=0.43 Score=34.86 Aligned_cols=62 Identities=13% Similarity=0.147 Sum_probs=48.8
Q ss_pred CCCceeeEEEEEecCCeEEEEccCCCeEEEeecCCCC-cCCCCCCCeEEecCCc-----ceeeeccCC
Q psy7782 157 GTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVD-KDQLEPGCSVLLNHKV-----HAVVGVLSD 218 (225)
Q Consensus 157 ~~p~~vg~v~e~~d~~~~iV~~~~g~~~~v~v~~~vd-~~~L~pG~~V~ln~~~-----~~Iv~vLp~ 218 (225)
......|+|++.+..+.+.|...+|..|.+.+...+- .-.+.+||.|.+.... =.|+.+++.
T Consensus 30 ~~~e~~G~Vi~~lgn~~y~V~~~dG~~~l~~i~GK~Rk~I~i~~GD~V~ve~~~~~~~kG~I~~~~~r 97 (117)
T 2oqk_A 30 EEGQEYGQVQRMLGNGRLDAYCFDGQKRLCHIRGKMRKKVWVNPGDIVLVSLRDFQDSKGDIILKYTP 97 (117)
T ss_dssp CTTEEEEEEEEEEETTEEEEEETTSCEEEEECCHHHHHHSCCCTTCEEEEEECTTCTTEEEEEEECCH
T ss_pred CCCEEEEEEEEEcCCCEEEEEeCCCCEEEEEEcCceecCCcCCCCCEEEEEEEcCCCCeEEEEEEech
Confidence 3456789999999999999988899999999998665 4666799999996432 246666664
No 428
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=89.57 E-value=0.057 Score=42.16 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=20.8
Q ss_pred CceeEEEcCCCCCCCcccccccCCce
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
.-.|++.|+||+|||+|+.+..+..+
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~~~ 55 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTNAF 55 (204)
Confidence 34689999999999999977665444
No 429
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=90.06 E-value=0.036 Score=42.08 Aligned_cols=26 Identities=15% Similarity=0.103 Sum_probs=20.4
Q ss_pred CceeEEEcCCCCCCCcccccccCCce
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
.-.+++.|++|+|||+|+.+..+..+
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~ 33 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTF 33 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45789999999999999976554443
No 430
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.05 E-value=0.046 Score=47.85 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=19.0
Q ss_pred ceeEEEcCCCCCCCcccccccCC
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~ 55 (225)
.-+.|.||||+|||||++.++|.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 45779999999999999866663
No 431
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.04 E-value=0.036 Score=42.82 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=19.8
Q ss_pred ceeEEEcCCCCCCCcccccccCCce
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
--|++.|++|+|||+|+.+..+..+
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~ 46 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKRF 46 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC
Confidence 3689999999999999976555443
No 432
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=90.02 E-value=0.036 Score=42.44 Aligned_cols=26 Identities=23% Similarity=0.143 Sum_probs=21.7
Q ss_pred CceeEEEcCCCCCCCcccccccCCce
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
.-.|++.|++|+|||+|..+..+..+
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~ 46 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEV 46 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34789999999999999987776555
No 433
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=90.01 E-value=0.11 Score=39.85 Aligned_cols=29 Identities=17% Similarity=0.025 Sum_probs=23.4
Q ss_pred CCceeEEEcCCCCCCCcccccccCCceee
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGYHYYC 59 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~~~~~ 59 (225)
..-.+++.|++|+|||+|..+..+..+..
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~ 49 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVT 49 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 45679999999999999998776655544
No 434
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.99 E-value=0.065 Score=43.78 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=12.3
Q ss_pred ceeEEEcCCCCCCCcccc
Q psy7782 33 KGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~ 50 (225)
.=|.|-||+|+||||+++
T Consensus 26 ~~I~~eG~~GsGKsT~~~ 43 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQ 43 (227)
T ss_dssp CEEEEECCC---CHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 346788999999999886
No 435
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=89.97 E-value=0.041 Score=43.02 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=19.5
Q ss_pred CceeEEEcCCCCCCCcccccccCCce
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
.-.|++.|++|+|||+|+.+..+..+
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~ 50 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKF 50 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC---
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC
Confidence 35789999999999999976655443
No 436
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=89.96 E-value=0.087 Score=46.01 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=19.3
Q ss_pred eeEEEcCCCCCCCcccccccCCce
Q psy7782 34 GVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~~~~ 57 (225)
-+.|.|+||+|||+|..+.++..+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 478999999999999987777554
No 437
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=89.92 E-value=0.048 Score=42.35 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=19.8
Q ss_pred CceeEEEcCCCCCCCcccccccCCce
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
.--|++.|++|+|||+|+.+..+..+
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~~ 45 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNGY 45 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC---
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 45789999999999999986666544
No 438
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=89.87 E-value=0.065 Score=39.85 Aligned_cols=23 Identities=17% Similarity=0.117 Sum_probs=18.4
Q ss_pred eeEEEcCCCCCCCcccccccCCc
Q psy7782 34 GVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~~~ 56 (225)
-+++.|++|+|||+|+.+..+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999997655433
No 439
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.86 E-value=0.044 Score=49.15 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=19.0
Q ss_pred CCceeEEEcCCCCCCCcccccccC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~ 54 (225)
...-+.|.||+|||||+|++.++|
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag 179 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMAR 179 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 334467999999999999986655
No 440
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.85 E-value=0.038 Score=42.64 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=19.9
Q ss_pred ceeEEEcCCCCCCCcccccccCCce
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
--|++.|++|+|||+|+.+..+..+
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~~ 47 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQF 47 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4689999999999999976655433
No 441
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=89.83 E-value=0.047 Score=49.17 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=18.2
Q ss_pred CceeEEEcCCCCCCCccccccc
Q psy7782 32 PKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~ 53 (225)
+.-|+|.|+||+|||++++..+
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La 60 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLT 60 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999997443
No 442
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.81 E-value=0.035 Score=50.17 Aligned_cols=26 Identities=23% Similarity=0.105 Sum_probs=20.7
Q ss_pred CCCCceeEEEcCCCCCCCcccccccC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
+....-+.|.||.|||||||++.++|
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~G 160 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCS 160 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHH
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 44555688999999999999985555
No 443
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=89.81 E-value=0.035 Score=43.10 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=19.6
Q ss_pred CceeEEEcCCCCCCCcccccccCCc
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~ 56 (225)
..-+++.|+||+|||++..+..+-.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~ 47 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDR 47 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999997655533
No 444
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=89.79 E-value=0.071 Score=48.97 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=16.8
Q ss_pred CceeEEEcCCCCCCCcccc
Q psy7782 32 PKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~ 50 (225)
...++|+|++|||||+|+.
T Consensus 241 g~~~lffGlSGtGKTTLs~ 259 (540)
T 2olr_A 241 GDVAVFFGLSGTGKTTLST 259 (540)
T ss_dssp SCEEEEECSTTSSHHHHHC
T ss_pred CCEEEEEccCCCCHHHHhc
Confidence 3679999999999999985
No 445
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=89.75 E-value=0.036 Score=43.34 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=18.2
Q ss_pred ceeEEEcCCCCCCCcccccccC
Q psy7782 33 KGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~ 54 (225)
--|++.|++|+|||+|+.+..+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999865444
No 446
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.72 E-value=0.043 Score=42.81 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=21.7
Q ss_pred CCceeEEEcCCCCCCCcccccccCCcee
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGYHYY 58 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~~~~ 58 (225)
...-|++.|++|+|||+|+.+..+..+.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~ 50 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS 50 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC
Confidence 3456899999999999999866654443
No 447
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=89.71 E-value=0.045 Score=42.33 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=20.4
Q ss_pred ceeEEEcCCCCCCCcccccccCCce
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
-.|++.|+||+|||+|+.+..+..+
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~~ 48 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGEI 48 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC
Confidence 4789999999999999986655443
No 448
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=89.65 E-value=0.054 Score=44.38 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=21.7
Q ss_pred CceeEEEcCCCCCCCcccccccCCcee
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYHYY 58 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~~~ 58 (225)
.--|+|.|+||+|||+|+.++.+..++
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~ 47 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRF 47 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCc
Confidence 457899999999999999866665544
No 449
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.65 E-value=0.063 Score=43.30 Aligned_cols=18 Identities=39% Similarity=0.447 Sum_probs=15.3
Q ss_pred ceeEEEcCCCCCCCcccc
Q psy7782 33 KGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~ 50 (225)
.=|.|-||+|+||||+++
T Consensus 7 ~~i~~eG~~gsGKsT~~~ 24 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRD 24 (213)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHH
Confidence 346788999999999885
No 450
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.62 E-value=0.063 Score=47.89 Aligned_cols=24 Identities=17% Similarity=0.288 Sum_probs=20.4
Q ss_pred eeEEEcCCCCCCCcccccccCCce
Q psy7782 34 GVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~~~~ 57 (225)
.+.|.||+|+|||||.+..+|..+
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 358999999999999998877655
No 451
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.60 E-value=0.05 Score=46.96 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=18.0
Q ss_pred CCceeEEEcCCCCCCCccccccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~ 53 (225)
...-+.|.||||+|||||.+..+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 33446699999999999987554
No 452
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=89.56 E-value=0.038 Score=43.69 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=20.0
Q ss_pred ceeEEEcCCCCCCCcccccccCCce
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
--|++.|++|+|||+|+.+.++..+
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~~ 53 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDCF 53 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4689999999999999976555433
No 453
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=89.55 E-value=0.083 Score=49.00 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=19.8
Q ss_pred CceeEEEcCCCCCCCcccccccCC
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~ 55 (225)
..-+.|.||+|+||||+++..+|.
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 345668899999999999977773
No 454
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.43 E-value=0.051 Score=42.69 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=20.2
Q ss_pred CceeEEEcCCCCCCCcccccccCCce
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
..-+++.|++|+|||+|+.+..+..|
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~ 32 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQY 32 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 35789999999999999976655443
No 455
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=89.41 E-value=0.075 Score=41.47 Aligned_cols=18 Identities=22% Similarity=0.135 Sum_probs=15.8
Q ss_pred ceeEEEcCCCCCCCcccc
Q psy7782 33 KGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~ 50 (225)
.-+.+.|++|+|||+++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~ 22 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLME 22 (169)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 467899999999999885
No 456
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=89.40 E-value=0.059 Score=44.91 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=21.4
Q ss_pred ceeEEEcCCCCCCCcccccccCCce
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
-.|.|.|+||+|||+|..+.+|..+
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~ 28 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQ 28 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4688999999999999988877664
No 457
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=89.31 E-value=0.058 Score=42.68 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=19.3
Q ss_pred ceeEEEcCCCCCCCcccccccCCce
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
--|++.|++|+|||+|+.+..+..+
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~~ 59 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGAF 59 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC---
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCC
Confidence 4789999999999999987666444
No 458
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.23 E-value=0.071 Score=43.22 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=15.9
Q ss_pred ceeEEEcCCCCCCCcccc
Q psy7782 33 KGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~ 50 (225)
+-|.+.|++|+||||+++
T Consensus 3 ~~i~~~G~~g~GKtt~~~ 20 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVK 20 (241)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHH
Confidence 457899999999999986
No 459
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.22 E-value=0.056 Score=48.11 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=16.1
Q ss_pred CceeEEEcCCCCCCCcccc
Q psy7782 32 PKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~ 50 (225)
++-+++.||+|+|||++|.
T Consensus 2 ~~~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp CEEEEEEECSSSSHHHHHH
T ss_pred CcEEEEECcchhhHHHHHH
Confidence 3457899999999999985
No 460
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=89.21 E-value=0.041 Score=47.83 Aligned_cols=24 Identities=13% Similarity=0.203 Sum_probs=18.9
Q ss_pred CCceeEEEcCCCCCCCcccccccC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~ 54 (225)
...-+.|.||+|+|||+|.+.++|
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g 93 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICN 93 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 334467999999999999985555
No 461
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=89.05 E-value=0.075 Score=45.65 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=17.3
Q ss_pred CceeEEEcCCCCCCCcccc
Q psy7782 32 PKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~ 50 (225)
.+|+||.|++|+|||++|.
T Consensus 144 g~~vl~~G~sG~GKSt~a~ 162 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETAL 162 (314)
T ss_dssp TEEEEEEESTTSSHHHHHH
T ss_pred CEEEEEEeCCCCCHHHHHH
Confidence 5799999999999999885
No 462
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=89.05 E-value=0.092 Score=48.65 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=16.3
Q ss_pred CCceeEEEcCCCCCCCccc
Q psy7782 31 PPKGVILYGPPGTGKTLPF 49 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la 49 (225)
....+++.||||||||+.+
T Consensus 21 ~~~~~lV~a~aGsGKT~~l 39 (647)
T 3lfu_A 21 PRSNLLVLAGAGSGKTRVL 39 (647)
T ss_dssp CSSCEEEEECTTSCHHHHH
T ss_pred CCCCEEEEECCCCCHHHHH
Confidence 4567899999999999975
No 463
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=89.04 E-value=0.13 Score=47.84 Aligned_cols=25 Identities=40% Similarity=0.603 Sum_probs=20.6
Q ss_pred CCCceeEEEcCCCCCCCcccccccC
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
++..-+-+.||+|+||||+++..+|
T Consensus 379 ~~G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 379 KPGQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp CTTCEEEEECCTTSSTTHHHHHHTT
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3445667999999999999987777
No 464
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=89.02 E-value=0.091 Score=48.58 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=20.4
Q ss_pred CCceeEEEcCCCCCCCcccccccCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+..-+-+.||+|+||||+++..+|.
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 3445678899999999999988873
No 465
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.00 E-value=0.044 Score=43.21 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=18.3
Q ss_pred ceeEEEcCCCCCCCcccccccC
Q psy7782 33 KGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~ 54 (225)
-.|++.|++|+|||+|+.+..+
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4789999999999999875443
No 466
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=88.96 E-value=0.09 Score=48.27 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=16.4
Q ss_pred ceeEEEcCCCCCCCcccc
Q psy7782 33 KGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~ 50 (225)
..++|+|++|||||+|+.
T Consensus 236 ~~~~ffGlSGtGKTTLs~ 253 (532)
T 1ytm_A 236 NTAIFFGLSGTGKTTLST 253 (532)
T ss_dssp SEEEEECCTTSSHHHHHC
T ss_pred eEEEEEecCCCCHHHHhh
Confidence 579999999999999885
No 467
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=88.94 E-value=0.078 Score=41.87 Aligned_cols=28 Identities=11% Similarity=0.182 Sum_probs=20.2
Q ss_pred eEEEcCCCCCCCccccccc--CCceeeccC
Q psy7782 35 VILYGPPGTGKTLPFSPAL--GYHYYCRGA 62 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~~--~~~~~~~~~ 62 (225)
+|++|++|+|||++|...+ +.+.+++--
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~~~~~~yiaT 31 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGDAPQVLYIAT 31 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCSCSSEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHhcCCCeEEEec
Confidence 6899999999999996222 555544443
No 468
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=88.93 E-value=0.091 Score=48.18 Aligned_cols=19 Identities=32% Similarity=0.468 Sum_probs=16.9
Q ss_pred CceeEEEcCCCCCCCcccc
Q psy7782 32 PKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~ 50 (225)
...++|+|++|||||+|+.
T Consensus 213 g~~~~ffGlSGtGKTTLs~ 231 (524)
T 1ii2_A 213 GDVTVFFGLSGTGKTTLSA 231 (524)
T ss_dssp CCEEEEECCTTSSHHHHHC
T ss_pred CCEEEEEccCCcchhhhhh
Confidence 4688999999999999975
No 469
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.92 E-value=0.046 Score=42.17 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=20.0
Q ss_pred CceeEEEcCCCCCCCcccccccCCc
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~ 56 (225)
.-.|++.|++|+|||+|+.+..+..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCC
Confidence 3578999999999999987655533
No 470
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.90 E-value=0.053 Score=41.08 Aligned_cols=18 Identities=22% Similarity=0.468 Sum_probs=15.3
Q ss_pred eEEEcCCCCCCCcccccc
Q psy7782 35 VILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 35 iLl~GppGtGKT~la~~~ 52 (225)
.+++||.|+|||++..++
T Consensus 26 ~~I~G~NGsGKStil~Ai 43 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAI 43 (149)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 479999999999988644
No 471
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=88.86 E-value=0.085 Score=40.35 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=17.1
Q ss_pred ceeEEEcCCCCCCCcccccc
Q psy7782 33 KGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~ 52 (225)
--|++.|+||+|||+|++..
T Consensus 15 ~ki~vvG~~~~GKssL~~~l 34 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWI 34 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999998643
No 472
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=88.79 E-value=0.096 Score=42.32 Aligned_cols=29 Identities=28% Similarity=0.201 Sum_probs=23.5
Q ss_pred ceeEEEcCCCCCCCcccc--cccCCceeecc
Q psy7782 33 KGVILYGPPGTGKTLPFS--PALGYHYYCRG 61 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~--~~~~~~~~~~~ 61 (225)
-.|=|.|..|||||++++ +..|.++++..
T Consensus 10 ~~iglTGgigsGKStv~~~l~~~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAARGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHCCCcEEECc
Confidence 477899999999999997 45788888543
No 473
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=88.73 E-value=0.083 Score=47.53 Aligned_cols=21 Identities=38% Similarity=0.529 Sum_probs=16.8
Q ss_pred CCceeEEEcCCCCCCCccccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~ 51 (225)
..+-.+++||||||||++...
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~ 180 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILS 180 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHH
T ss_pred cccEEEEEcCCCCCHHHHHHH
Confidence 344568999999999998853
No 474
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=88.65 E-value=0.078 Score=48.25 Aligned_cols=43 Identities=9% Similarity=-0.096 Sum_probs=27.0
Q ss_pred CChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccc
Q psy7782 1 MSLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPA 52 (225)
Q Consensus 1 iGl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~ 52 (225)
+|.+++|..|.-.+...-.. +...-++||.|+||| ||++|++.
T Consensus 216 ~G~e~vK~aLll~L~GG~~k--------~rgdihVLL~G~PGt-KS~Lar~i 258 (506)
T 3f8t_A 216 PGAEEVGKMLALQLFSCVGK--------NSERLHVLLAGYPVV-CSEILHHV 258 (506)
T ss_dssp TTCHHHHHHHHHHHTTCCSS--------GGGCCCEEEESCHHH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCccc--------cCCceeEEEECCCCh-HHHHHHHH
Confidence 35666665555544441111 111226999999999 99999866
No 475
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=88.60 E-value=0.087 Score=43.03 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=21.7
Q ss_pred CCceeEEEcCCCCCCCcccccccCCce
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
....|+|.|+||+|||++..+..+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~ 47 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQA 47 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345789999999999999987666553
No 476
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=88.59 E-value=0.02 Score=44.73 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=17.9
Q ss_pred ceeEEEcCCCCCCCcccccccC
Q psy7782 33 KGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~ 54 (225)
+-+.+.||+|+||||+++.+++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3577899999999999975544
No 477
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=88.58 E-value=0.075 Score=49.16 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=20.3
Q ss_pred CCceeEEEcCCCCCCCcccccccCC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
+..-+.+.||+|+||||+++..+|.
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3445679999999999999977773
No 478
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=88.51 E-value=0.15 Score=47.86 Aligned_cols=29 Identities=34% Similarity=0.319 Sum_probs=22.0
Q ss_pred CceeEEEcCCCCCCCcccccc---c---CCceeec
Q psy7782 32 PKGVILYGPPGTGKTLPFSPA---L---GYHYYCR 60 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~---~---~~~~~~~ 60 (225)
+.-|+|.|+||+||||+|+.. . |.+++.+
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~l 86 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 86 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 445889999999999999732 2 6677654
No 479
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.50 E-value=0.091 Score=48.32 Aligned_cols=26 Identities=35% Similarity=0.383 Sum_probs=21.1
Q ss_pred CCCceeEEEcCCCCCCCcccccccCC
Q psy7782 30 KPPKGVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 30 ~~~~giLl~GppGtGKT~la~~~~~~ 55 (225)
.+..-+.|.||.|+|||||++.++|.
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34455779999999999999977774
No 480
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.50 E-value=0.062 Score=41.43 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=20.1
Q ss_pred ceeEEEcCCCCCCCcccccccCCce
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
-.|++.|++|+|||+|+.+..+..+
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~ 43 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAF 43 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4789999999999999976655443
No 481
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.42 E-value=0.052 Score=42.60 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=20.1
Q ss_pred ceeEEEcCCCCCCCcccccccCCce
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
..|++.|++|+|||+|+.+..+..+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~ 50 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEF 50 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCC
Confidence 4789999999999999976655443
No 482
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.41 E-value=0.081 Score=43.45 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=15.6
Q ss_pred ceeEEEcCCCCCCCcccc
Q psy7782 33 KGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~ 50 (225)
.=|.|.||+|+||||+++
T Consensus 28 ~~i~~eG~~GsGKsT~~~ 45 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQ 45 (236)
T ss_dssp CEEEEEESTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 456789999999999886
No 483
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=88.37 E-value=0.053 Score=42.48 Aligned_cols=24 Identities=21% Similarity=0.115 Sum_probs=19.4
Q ss_pred ceeEEEcCCCCCCCcccccccCCc
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~ 56 (225)
--|++.|++|+|||+|+.+..+..
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhhCC
Confidence 468999999999999997655433
No 484
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=88.35 E-value=0.057 Score=48.38 Aligned_cols=20 Identities=40% Similarity=0.692 Sum_probs=17.5
Q ss_pred CCceeEEEcCCCCCCCcccc
Q psy7782 31 PPKGVILYGPPGTGKTLPFS 50 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~ 50 (225)
+++-|++.|++|+||||++.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~ 118 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVG 118 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46788899999999999885
No 485
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=88.32 E-value=0.18 Score=44.85 Aligned_cols=53 Identities=25% Similarity=0.308 Sum_probs=30.9
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCCCCCceeEEEcCCCCCCCcccccccCCc
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~~~~~~~ 56 (225)
|++++.+.|.+.+...-...+ ........--+.|.|+||+|||+|..+.+|..
T Consensus 152 gv~~L~~~i~~~l~~~~~~~~--~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 152 NLDTMLETIIKKLEEKGLDLE--SKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp SHHHHHHHHHHHHHHTTCCSS--SCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CHHHHHHHHHHhcccccccch--hccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 667777777665532000000 00001123467899999999999998766644
No 486
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=88.29 E-value=0.091 Score=44.45 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=19.8
Q ss_pred eeEEEcCCCCCCCcccccccCCce
Q psy7782 34 GVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~~~~ 57 (225)
-+.+.|+||+|||+|..+..|..+
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~~~ 33 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQKI 33 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 467999999999999987776554
No 487
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=88.28 E-value=0.032 Score=51.61 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=19.4
Q ss_pred CCceeEEEcCCCCCCCcccccccC
Q psy7782 31 PPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 31 ~~~giLl~GppGtGKT~la~~~~~ 54 (225)
...-+.|.||+||||||+++.+++
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHH
Confidence 344578999999999999986655
No 488
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=88.16 E-value=0.17 Score=42.42 Aligned_cols=54 Identities=15% Similarity=0.182 Sum_probs=31.9
Q ss_pred ChHHHHHHHHHHHHcccCChHHHHHcCC-CCCceeEEEcCCCCCCCcccccccCCcee
Q psy7782 2 SLDVQIQEIKESVELPLTHPEYYEEMGI-KPPKGVILYGPPGTGKTLPFSPALGYHYY 58 (225)
Q Consensus 2 Gl~~~k~~l~~~v~~~l~~~~~~~~~g~-~~~~giLl~GppGtGKT~la~~~~~~~~~ 58 (225)
|++++.+.+.+.+... .+.....|. ..+--+.+.|.||+|||++..+..|....
T Consensus 92 gi~~L~~~i~~~l~~~---~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~ 146 (282)
T 1puj_A 92 GLNQIVPASKEILQEK---FDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIA 146 (282)
T ss_dssp TGGGHHHHHHHHHHHH---HHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred cHHHHHHHHHHHHHHH---HHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCcee
Confidence 4555555555554321 111122232 23346889999999999999877775543
No 489
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=88.15 E-value=0.69 Score=31.38 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=40.6
Q ss_pred eeeEEEEEecCCeEEEEccCCCeEEEeecCCCC--cCCCCCCCeEEecCC
Q psy7782 161 SVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVD--KDQLEPGCSVLLNHK 208 (225)
Q Consensus 161 ~vg~v~e~~d~~~~iV~~~~g~~~~v~v~~~vd--~~~L~pG~~V~ln~~ 208 (225)
..|+|++.+..+.+-|...+|..+.+.++..+- ...+.|||+|.+.-.
T Consensus 16 ~~G~Vik~l~n~~f~V~l~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~ 65 (79)
T 3i4o_A 16 VEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELS 65 (79)
T ss_dssp EEEEEEEEETTTEEEEEETTSCEEEEEECHHHHHTTCCCCTTCEEEEEEE
T ss_pred EEEEEEEEcCCCEEEEEeCCCCEEEEEeCcceecCCccCCCCCEEEEEEC
Confidence 459999999999999998899999999998764 456889999987543
No 490
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=88.14 E-value=0.061 Score=42.78 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=19.4
Q ss_pred ceeEEEcCCCCCCCcccccccCCc
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYH 56 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~ 56 (225)
--|++.|++|+|||+|+.+..+..
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 478999999999999997555433
No 491
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.08 E-value=0.094 Score=40.41 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=18.5
Q ss_pred ceeEEEcCCCCCCCcccccccC
Q psy7782 33 KGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~ 54 (225)
--|++.|++|+|||+|+.+..+
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~ 45 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYAD 45 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhc
Confidence 4689999999999999975544
No 492
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=88.07 E-value=0.058 Score=45.72 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=18.3
Q ss_pred eeEEEcCCCCCCCcccccccCC
Q psy7782 34 GVILYGPPGTGKTLPFSPALGY 55 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~~ 55 (225)
.+.|.||+|+|||+|.+.++|.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5688999999999999876664
No 493
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=87.96 E-value=0.084 Score=42.94 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=21.3
Q ss_pred ceeEEEcCCCCCCCcccc---cccCCceee
Q psy7782 33 KGVILYGPPGTGKTLPFS---PALGYHYYC 59 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~---~~~~~~~~~ 59 (225)
.-|.+.|++|||||++++ ...|.+|++
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 357799999999999997 335777764
No 494
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=87.92 E-value=0.057 Score=42.15 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=20.1
Q ss_pred ceeEEEcCCCCCCCcccccccCCce
Q psy7782 33 KGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 33 ~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
..|++.|++|+|||+|+.+..+..+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~ 50 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQF 50 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC
Confidence 4689999999999999976655444
No 495
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=87.84 E-value=0.076 Score=42.10 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=20.4
Q ss_pred CceeEEEcCCCCCCCcccccccCCce
Q psy7782 32 PKGVILYGPPGTGKTLPFSPALGYHY 57 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~~~~~ 57 (225)
.--|++.|++|+|||+|+.+..+-.|
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~~ 52 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDCY 52 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCC
Confidence 35789999999999999975554433
No 496
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=87.80 E-value=0.07 Score=48.52 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=19.0
Q ss_pred CCCCceeEEEcCCCCCCCcccccccC
Q psy7782 29 IKPPKGVILYGPPGTGKTLPFSPALG 54 (225)
Q Consensus 29 ~~~~~giLl~GppGtGKT~la~~~~~ 54 (225)
+.+ .-+.|.||+|||||||.+.++|
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHH
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhc
Confidence 445 5667999999999999864444
No 497
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=87.79 E-value=0.068 Score=41.96 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=18.2
Q ss_pred CceeEEEcCCCCCCCccccccc
Q psy7782 32 PKGVILYGPPGTGKTLPFSPAL 53 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~~~ 53 (225)
.-.|++.|++|+|||+|+.+..
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~ 51 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYT 51 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHH
Confidence 4578999999999999995444
No 498
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.74 E-value=2.2 Score=30.78 Aligned_cols=51 Identities=18% Similarity=0.135 Sum_probs=42.9
Q ss_pred CCCceeeEEEEEecCCeEEEEccCCCeEEEeecCCCCc-CCCCCCCeEEecC
Q psy7782 157 GTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDK-DQLEPGCSVLLNH 207 (225)
Q Consensus 157 ~~p~~vg~v~e~~d~~~~iV~~~~g~~~~v~v~~~vd~-~~L~pG~~V~ln~ 207 (225)
.....+|+|++.+..+.+-|...+|.+.++.++..+-+ --+++|+.|.+..
T Consensus 13 ~ege~~g~V~~~lgn~~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~ 64 (111)
T 2dgy_A 13 SNQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDP 64 (111)
T ss_dssp CSSCEEEEEEECCSSSEEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEEE
T ss_pred CCCeEEEEEEEeCCCCEEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEEe
Confidence 34678999999999999999999999999999987654 3367888888854
No 499
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=87.66 E-value=0.095 Score=43.46 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=19.9
Q ss_pred eeEEEcCCCCCCCcccccccCCceee
Q psy7782 34 GVILYGPPGTGKTLPFSPALGYHYYC 59 (225)
Q Consensus 34 giLl~GppGtGKT~la~~~~~~~~~~ 59 (225)
.|++.|+||+|||+|..+..+...+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~~~~ 35 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTDLYS 35 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccc
Confidence 58999999999999997666654443
No 500
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=87.62 E-value=0.11 Score=41.05 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=17.1
Q ss_pred CceeEEEcCCCCCCCccccc
Q psy7782 32 PKGVILYGPPGTGKTLPFSP 51 (225)
Q Consensus 32 ~~giLl~GppGtGKT~la~~ 51 (225)
..-+++.|+||+|||+++.+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~ 49 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIER 49 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHH
Confidence 45788999999999999863
Done!