RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7782
(225 letters)
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 258
Score = 76.2 bits (186), Expect = 3e-17
Identities = 27/46 (58%), Positives = 36/46 (78%)
Query: 3 LDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLP 48
Q+ +IKE VELPL HP ++ +G+KPP+G++LYGPPGTGKTL
Sbjct: 9 CRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLI 54
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 265
Score = 65.6 bits (159), Expect = 1e-13
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 3 LDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPF 49
L+ +E++E V+ P+ HP+ + + G+ P KGV+ YGPPG GKTL
Sbjct: 12 LEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 58
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 62.5 bits (152), Expect = 2e-12
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 3 LDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTL 47
D +E+ E VE L P ++++G K PKGV++ GPPGTGKTL
Sbjct: 17 CDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTL 60
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 60.2 bits (146), Expect = 1e-11
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 3 LDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTL 47
+ +E+KE VE L +P + EMG + PKGV+L GPPG GKT
Sbjct: 14 AEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTH 57
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 44.9 bits (105), Expect = 2e-06
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 6 QIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTL 47
+ ++ + + P V+L GPP +GKT
Sbjct: 14 WGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTA 55
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 43.1 bits (101), Expect = 1e-05
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 10 IKESVELPLTHPEYYEEMGIKPPKGVIL-YGPPGTGKTL 47
+ + EL P E G + G+++ G +GKT
Sbjct: 100 VDLTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTP 138
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 38.4 bits (88), Expect = 3e-04
Identities = 14/100 (14%), Positives = 32/100 (32%), Gaps = 7/100 (7%)
Query: 4 DVQIQE-IKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLPFSPALGYHYYCRGA 62
D Q + + +++E + + ++ P +L G PG+GKT A+
Sbjct: 8 DKQFENRLNDNLEELIQGKK-----AVESPTAFLLGGQPGSGKTS-LRSAIFEETQGNVI 61
Query: 63 GSNSDKKDDKDKKKKYEPPIPTRVGKKKRKAKGPDAAIKL 102
++D + + + K +
Sbjct: 62 VIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAI 101
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 38.2 bits (87), Expect = 4e-04
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 4 DVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTL 47
+ Q+Q++ + L +P L G PGTGKT+
Sbjct: 22 EQQLQQLDILLGNWLRNPG-------HHYPRATLLGRPGTGKTV 58
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 37.0 bits (85), Expect = 0.001
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 4/45 (8%)
Query: 3 LDVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTL 47
L + ++ V L I + + GP +GKT
Sbjct: 129 LHCLLPKMDSVVYDFLKC----MVYNIPKKRYWLFKGPIDSGKTT 169
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 36.4 bits (83), Expect = 0.001
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 25 EEMGIKPPKGVILYGPPGTGKTLPFSPALGYHYYCRG 61
+++ + + I+ PG GKT + PA+ RG
Sbjct: 3 DDI-FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRG 38
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 36.4 bits (83), Expect = 0.002
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 30 KPPKGVILYGPPGTGKTL 47
PK +++ GP G GKT
Sbjct: 47 VTPKNILMIGPTGVGKTE 64
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 35.7 bits (81), Expect = 0.003
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
Query: 7 IQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKT 46
Q+++ +E +P + ++L+GPPG GKT
Sbjct: 18 KQKLRVYLEAAKARK--------EPLEHLLLFGPPGLGKT 49
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 35.5 bits (80), Expect = 0.003
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 4 DVQIQEIKESVELPLTHPEY----YEEMGIKPPKGVILYGPPGTGKT 46
+ ++K + + + G + +LYGPPG GKT
Sbjct: 20 KGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKT 66
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 35.1 bits (79), Expect = 0.004
Identities = 22/213 (10%), Positives = 45/213 (21%), Gaps = 7/213 (3%)
Query: 4 DVQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLP---FSPALGYHYYCR 60
+ + + L ++ + G G GKT +
Sbjct: 22 RGEAEALARIYLNRLLSGAGLSDVNM----IYGSIGRVGIGKTTLAKFTVKRVSEAAAKE 77
Query: 61 GAGSNSDKKDDKDKKKKYEPPIPTRVGKKKRKAKGPDAAIKLPQVTPHTKCRLKLLKLER 120
G + + Y A+ + + L
Sbjct: 78 GLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVI 137
Query: 121 IKDYLLMEEEFIRNQERLKPQEEKNEEERSRVDDLRGTPMSVGTLEEIIDDNHAIVSTSV 180
+ ++ M E L +EE SR R + V + + +
Sbjct: 138 LDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVE 197
Query: 181 GSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVV 213
+ L +L + V
Sbjct: 198 SQIGFKLHLPAYKSRELYTILEQRAELGLRDTV 230
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 32.0 bits (71), Expect = 0.028
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 29 IKPPKGVILYGPPGTGKTLPFSPALGYHYYCRG 61
+K +L PG GKT F P + R
Sbjct: 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRR 36
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase,
BchI {Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 31.1 bits (69), Expect = 0.11
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 34 GVILYGPPGTGKTL 47
GV+++G GTGK+
Sbjct: 30 GVLVFGDRGTGKST 43
>d1dhsa_ c.31.1.1 (A:) Deoxyhypusine synthase, DHS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 361
Score = 30.6 bits (69), Expect = 0.12
Identities = 10/71 (14%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 120 RIKDYLLMEEEFIRNQERLKPQEEKNEEERSRVDDLRGTPMSVGTLEEIIDDNHAIVSTS 179
RI + L+ E + + ++ L P ++ E++ + L + I++ ++ +
Sbjct: 157 RIGNLLVPNENYCKFEDWLMPILDQMVMEQNTEGVKWTPSKMIARLGKEINNPESVYYWA 216
Query: 180 VGSEHYVSILS 190
++++ + S
Sbjct: 217 --QKNHIPVFS 225
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 30.1 bits (67), Expect = 0.20
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 32 PKGVILYGPPGTGKTL 47
PK +++ GP G GKT
Sbjct: 49 PKNILMIGPTGVGKTE 64
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 29.9 bits (66), Expect = 0.22
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 30 KPPKGVILYGPPGTGKTL 47
+ V+L GPPG GKT
Sbjct: 33 EVLDHVLLAGPPGLGKTT 50
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 29.8 bits (65), Expect = 0.23
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 28 GIKPPKGVILYGPPGTGKT 46
GI+ ++G TGKT
Sbjct: 19 GIETGSITEMFGEFRTGKT 37
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 28.7 bits (63), Expect = 0.47
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 28 GIKPPKGVILYGPPGTGKTL 47
G ++ G GTGKTL
Sbjct: 22 GFFKDSIILATGATGTGKTL 41
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 28.4 bits (62), Expect = 0.49
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 27 MGIKPPKGVILYGPPGTGKT 46
M P V + G PG+GK
Sbjct: 1 MEKSKPNVVFVLGGPGSGKG 20
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 28.5 bits (62), Expect = 0.58
Identities = 3/17 (17%), Positives = 7/17 (41%)
Query: 30 KPPKGVILYGPPGTGKT 46
+ +++ PG G
Sbjct: 22 RGHHALLIQALPGMGDD 38
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 28.5 bits (62), Expect = 0.62
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 28 GIKPPKGVILYGPPGTGKT 46
+ L P G GK+
Sbjct: 25 NMVAGTVGALVSPGGAGKS 43
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 28.0 bits (61), Expect = 0.64
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 29 IKPPKGVILYGPPGTGKT 46
+K K + + G PG+GK
Sbjct: 5 LKKSKIIFVVGGPGSGKG 22
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 28.1 bits (61), Expect = 0.66
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 33 KGVILYGPPGTGKT 46
+ V L GPPG GKT
Sbjct: 2 RHVFLTGPPGVGKT 15
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 28.2 bits (61), Expect = 0.68
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 30 KPPKGVILYGPPGTGKT 46
+ ++LYGP GTGK
Sbjct: 31 RDLPHLLLYGPNGTGKK 47
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 28.0 bits (61), Expect = 0.75
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 28 GIKPPKGVILYGPPGTGKTL 47
G+ + ++ G GTGKTL
Sbjct: 22 GLPIGRSTLVSGTSGTGKTL 41
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 28.1 bits (61), Expect = 0.79
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 28 GIKPPKGVILYGPPGTGKT 46
G++ G G+GKT
Sbjct: 30 GLESQSVTEFAGVFGSGKT 48
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 251
Score = 28.1 bits (61), Expect = 0.82
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 28 GIKPPKGVILYGPPGTGKT 46
G++ L+G TGK+
Sbjct: 30 GVETGSITELFGEFRTGKS 48
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 28.2 bits (61), Expect = 0.89
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 28 GIKPPKGVILYGPPGTGKT 46
GI+ +G TGKT
Sbjct: 33 GIESMAITEAFGEFRTGKT 51
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 27.6 bits (60), Expect = 0.89
Identities = 11/17 (64%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
Query: 32 PKGV--ILYGPPGTGKT 46
PKGV +L GPPG GK
Sbjct: 1 PKGVRAVLLGPPGAGKG 17
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 27.8 bits (61), Expect = 1.0
Identities = 19/125 (15%), Positives = 31/125 (24%), Gaps = 17/125 (13%)
Query: 30 KPPKGVILYGPPGTGKT------------LPFSPALGYHYYCRGAGSNSDKKDDKDKKKK 77
K P ++L G GTGK F L R A ++ +
Sbjct: 10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVP 69
Query: 78 YEPPIPTRVGKKKRKAKGPDAAIKLPQVTPHTKCRLKLLKLERIKDYLLMEEEFIRNQER 137
+K ++ + + + EE E
Sbjct: 70 VYGEPG-----EKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEA 124
Query: 138 LKPQE 142
+KP E
Sbjct: 125 IKPDE 129
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 27.2 bits (59), Expect = 1.1
Identities = 22/148 (14%), Positives = 35/148 (23%), Gaps = 12/148 (8%)
Query: 35 VILYGPPGTGKTL---PFSPALGYHYYC-------RGAGSNSDKKDDKDKKKKYEPPIPT 84
++L G PG+GK+ + G ++ +
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQI 66
Query: 85 RVGKKKRKAKGPDAAIKLPQVTPHTKCRLKLLKLERIKDYLLMEEEFIRNQERLKPQEEK 144
R AK I V P L L ER +
Sbjct: 67 AADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAI--ERCLDRGGD 124
Query: 145 NEEERSRVDDLRGTPMSVGTLEEIIDDN 172
+ + V DL +G E +
Sbjct: 125 SLSDPLVVADLHSQFADLGAFEHHVLPV 152
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 27.4 bits (59), Expect = 1.3
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 28 GIKPPKGVILYGPPGTGKT 46
GI+ ++G G+GKT
Sbjct: 32 GIETQAITEVFGEFGSGKT 50
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 194
Score = 27.2 bits (59), Expect = 1.5
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 32 PKGVILYGPPGTGKT 46
P V + G PG GK
Sbjct: 1 PLVVFVLGGPGAGKG 15
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 26.9 bits (58), Expect = 1.5
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 32 PKGVILYGPPGTGKT 46
+ +IL G GK+
Sbjct: 3 TRMIILNGGSSAGKS 17
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 26.8 bits (58), Expect = 1.8
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 31 PPKGVILYGPPGTGKT 46
P+ V+ G PG GK+
Sbjct: 13 NPEVVVAVGFPGAGKS 28
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 26.5 bits (57), Expect = 1.9
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
Query: 30 KPPKG--VILYGPPGTGKT 46
+ PKG +++ G PGTGKT
Sbjct: 1 EQPKGINILITGTPGTGKT 19
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 26.6 bits (58), Expect = 2.1
Identities = 1/12 (8%), Positives = 5/12 (41%)
Query: 35 VILYGPPGTGKT 46
+++ G +
Sbjct: 18 ILINGEDLSYPR 29
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 26.5 bits (57), Expect = 2.3
Identities = 22/171 (12%), Positives = 42/171 (24%), Gaps = 29/171 (16%)
Query: 35 VILYGPPGTGKT---------LPFSPALGYHYYCRGAGSNSDKKDDKDKKKKYEPPIPTR 85
I+ GP G GK+ L S + + D+ T
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITD 64
Query: 86 VGKKKRKAKGPDAAIKLPQVTPHTKCRLKLLK-------------------LERIKDYLL 126
+ A+ + + L R
Sbjct: 65 LTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKK 124
Query: 127 MEEEFIRNQERLKPQEEKNEEERSRVDDLRGTPMSV-GTLEEIIDDNHAIV 176
E+ R E ++ E K +ER + P ++ ++ + + I
Sbjct: 125 DEQMGERCLELVEEFESKGIDERYFYNTSHLQPTNLNDIVKNLKTNPRFIF 175
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 26.4 bits (57), Expect = 2.5
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 31 PPKGVILYGPPGTGKT 46
P V++ G P +GK
Sbjct: 2 DPLKVMISGAPASGKG 17
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 136
Score = 26.0 bits (56), Expect = 2.6
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 35 VILYGPPGTGKTL 47
L+ P G+GK+
Sbjct: 11 AHLHAPTGSGKST 23
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 26.6 bits (57), Expect = 2.6
Identities = 4/12 (33%), Positives = 7/12 (58%)
Query: 35 VILYGPPGTGKT 46
++ G TGK+
Sbjct: 32 TLVLGLRRTGKS 43
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 26.6 bits (58), Expect = 2.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 110 KCRLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKNEEERSR 151
+ K+L + K+ +ME++ QE LK EK E +R +
Sbjct: 217 QASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQ 258
>d2nqda1 b.1.26.1 (A:3-110) Chagasin {Trypanosoma cruzi [TaxId:
5693]}
Length = 108
Score = 25.6 bits (56), Expect = 3.0
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 46 TLPFSPALGYHYYCRGAGSNSDKKDDKDKKKKYEPPIPTRVG 87
LP +P G+ +Y G S + + KY PP +G
Sbjct: 23 QLPSNPTTGFAWYFEGGTKESPNESMFTVENKYFPPDSKLLG 64
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 25.8 bits (55), Expect = 3.0
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 32 PKGVILYGPPGTGKT 46
K ++ G PG+GK+
Sbjct: 2 KKIILTIGCPGSGKS 16
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 108
Score = 25.2 bits (55), Expect = 3.1
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 99 AIKLPQVTPHTKCRLKLLKLERIKDYLLMEEEFIRNQERLKPQEEK 144
K P+VT + LKL E I +L+ E +F N +R+K +K
Sbjct: 56 IFKEPKVTDNYSLSLKLPDKEGIIKFLVDENDF--NYDRVKKHVDK 99
>d1rdsa_ d.1.1.4 (A:) RNase Ms {Molsin (Aspergillus saitoi) [TaxId:
5063]}
Length = 105
Score = 25.2 bits (55), Expect = 4.0
Identities = 16/68 (23%), Positives = 20/68 (29%), Gaps = 12/68 (17%)
Query: 33 KGVILYGPPGTGKTLPFSPALGYHYYCRGAGSNSDKKDDKDKKKKYEPPIPTRVGKKKRK 92
KG LY T P H Y + + D YE PI +
Sbjct: 23 KGYSLYESGDTIDDYP-------HEY-----HDYEGFDFPVSGTYYEYPIMSDYDVYTGG 70
Query: 93 AKGPDAAI 100
+ G D I
Sbjct: 71 SPGADRVI 78
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase),
helicase domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 25.8 bits (55), Expect = 4.4
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 6 QIQEI---KESVELPLTHPEYYEEM--GIKPPKGVILYGPPGTGKT 46
+I+E +ESV L + + G + + +++ G GK+
Sbjct: 4 RIREHLSSEESVGLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKS 49
>d1m7va_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
{Bacillus subtilis [TaxId: 1423]}
Length = 363
Score = 25.8 bits (57), Expect = 4.4
Identities = 6/19 (31%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
Query: 15 ELPLTHPEY--YEEMGIKP 31
E+P+THP+ + ++ +K
Sbjct: 194 EVPITHPDIEAFSDLELKW 212
>d1om4a_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 418
Score = 25.8 bits (57), Expect = 5.0
Identities = 8/31 (25%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
Query: 4 DVQIQEIKESV--ELPLTHPEY--YEEMGIK 30
D ++ +I + E+P+ HP++ ++++G+K
Sbjct: 232 DPELFQIPPELVLEVPIRHPKFDWFKDLGLK 262
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 25.5 bits (55), Expect = 5.2
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 30 KPPKGVILYGPPGTGKT 46
+PP +++ G GTGKT
Sbjct: 9 EPPFVIMVVGVNGTGKT 25
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 25.5 bits (56), Expect = 5.2
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 35 VILYGPPGTGKTL 47
++ GP TGK+
Sbjct: 56 LVFCGPANTGKSY 68
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 25.4 bits (54), Expect = 5.3
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 33 KGVILYGPPGTGKT 46
K V + G +GK+
Sbjct: 8 KTVAILGGESSGKS 21
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 25.4 bits (55), Expect = 5.5
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 30 KPPKGVILYGPPGTGKT 46
K P +++ G G GKT
Sbjct: 7 KAPFVILMVGVNGVGKT 23
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 25.6 bits (56), Expect = 5.6
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 35 VILYGPPGTGKTL 47
V++ G G GK +
Sbjct: 26 VLITGESGVGKEV 38
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 25.2 bits (54), Expect = 6.0
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 35 VILYGPPGTGKT 46
V+L GPPG GK
Sbjct: 3 VLLLGPPGAGKG 14
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 25.1 bits (54), Expect = 6.3
Identities = 8/19 (42%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 29 IKPPKGVILY-GPPGTGKT 46
++P V+L G G GKT
Sbjct: 2 VEPKGRVVLVVGVNGVGKT 20
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 25.3 bits (55), Expect = 6.3
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 35 VILYGPPGTGKTLPFSPALGYHYYCRGAGSNSDKK 69
+ L+GP TGKT + A+ + G + +++
Sbjct: 107 IWLFGPATTGKTN-IAEAIAHTVPFYGCVNWTNEN 140
>d1mjta_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
{Staphylococcus aureus [TaxId: 1280]}
Length = 346
Score = 25.4 bits (56), Expect = 6.4
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 4 DVQIQEIKESV--ELPLTHPEY--YEEMGIKP 31
V+ E S+ E+P+ H Y ++ +K
Sbjct: 168 SVKFYEYPTSLIKEVPIEHNHYPKLRKLNLKW 199
>d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
{Cow (Bos taurus) [TaxId: 9913]}
Length = 416
Score = 25.5 bits (56), Expect = 6.4
Identities = 6/31 (19%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 4 DVQIQEIKESV--ELPLTHPEY--YEEMGIK 30
++ + + E+PL HP + +G++
Sbjct: 235 APELFVLPPELVLEVPLEHPTLEWFAALGLR 265
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 25.0 bits (53), Expect = 6.5
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 35 VILYGPPGTGKT 46
+L G G+GK+
Sbjct: 9 YVLMGVSGSGKS 20
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 24.9 bits (53), Expect = 6.6
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 35 VILYGPPGTGKT 46
++L GPPG GK
Sbjct: 5 MVLIGPPGAGKG 16
>d3e7ma1 d.174.1.1 (A:77-497) Nitric oxide (NO) synthase oxygenase
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 421
Score = 25.5 bits (56), Expect = 6.7
Identities = 7/18 (38%), Positives = 14/18 (77%), Gaps = 2/18 (11%)
Query: 15 ELPLTHPEY--YEEMGIK 30
E+ + HP+Y ++E+G+K
Sbjct: 246 EVTMEHPKYEWFQELGLK 263
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 24.9 bits (53), Expect = 7.2
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 35 VILYGPPGTGKT 46
++L G PG GK
Sbjct: 3 LVLMGLPGAGKG 14
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 24.8 bits (53), Expect = 7.5
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 35 VILYGPPGTGKT 46
+ G PG+GK
Sbjct: 9 AAIMGAPGSGKG 20
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 24.9 bits (53), Expect = 7.5
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 35 VILYGPPGTGKT 46
++L G PG GKT
Sbjct: 7 ILLTGTPGVGKT 18
>d2gtta1 a.260.1.1 (A:6-448) Nucleoprotein {Rabies virus [TaxId:
11292]}
Length = 443
Score = 25.2 bits (55), Expect = 7.7
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 127 MEEEFIRNQERLKPQEEKNEEERSRVDDLRGTPMSV 162
E F R+++ L+ E + GT S
Sbjct: 350 FERRFFRDEKELQEYEAAELTKTDVALADDGTVNSD 385
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 25.1 bits (54), Expect = 7.8
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 29 IKPPKGVILYGPPGTGKT 46
+K L G G+GKT
Sbjct: 7 LKDRNLWFLVGLQGSGKT 24
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 24.9 bits (53), Expect = 7.9
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 35 VILYGPPGTGKT 46
+IL G P GK
Sbjct: 3 IILLGAPVAGKG 14
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 24.8 bits (53), Expect = 8.1
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 35 VILYGPPGTGKT 46
++L G PG GK
Sbjct: 3 IVLMGLPGAGKG 14
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 24.7 bits (52), Expect = 9.4
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 33 KGVILYGPPGTGKT 46
+ + L GP G GK+
Sbjct: 3 RNIFLVGPMGAGKS 16
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter
jejuni [TaxId: 197]}
Length = 161
Score = 24.5 bits (52), Expect = 9.5
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 33 KGVILYGPPGTGKT 46
K ++ G G+GK+
Sbjct: 1 KNIVFIGFMGSGKS 14
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.135 0.389
Gapped
Lambda K H
0.267 0.0669 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 873,236
Number of extensions: 42531
Number of successful extensions: 232
Number of sequences better than 10.0: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 87
Length of query: 225
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,281,736
Effective search space: 183288248
Effective search space used: 183288248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.5 bits)