BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7785
(525 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FP4|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gtp
pdb|2FPG|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase In Complex With Gdp
pdb|2FPI|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol
pdb|2FPP|B Chain B, Crystal Structure Of Pig Gtp-Specific Succinyl-Coa
Synthetase From Polyethylene Glycol With Chloride Ions
Length = 395
Score = 402 bits (1034), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/391 (51%), Positives = 269/391 (68%), Gaps = 33/391 (8%)
Query: 33 ARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHK 92
A A K LN KE V+KAQILAGGRG G F +G K GVH T + + + + ++MIG+
Sbjct: 28 ANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYN 87
Query: 93 LITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKT 152
L TKQTPK G+ VNKVMVA++++I+RETY I+ DR NGPV++ SP GG DIE VAA
Sbjct: 88 LATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASN 147
Query: 153 PHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFL 212
P L+ ID+ +GI +S AQ ++A+ L
Sbjct: 148 PELIFKEQIDIIEGIKDSQAQ---------------------------------RMAENL 174
Query: 213 EFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQK 272
F G L+ +AA +++KL+NLFL +DATQ+E+NP ET E +V+ DAKINFDDNAEFRQK
Sbjct: 175 GFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQK 234
Query: 273 NIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFL 332
+IF+ ++ SE++P E +A+KY+L Y+G+DGNI C VNGAGLAMAT DII L+GG+PANFL
Sbjct: 235 DIFAMDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFL 294
Query: 333 DVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVV 392
D+GGGV E + QAF+++++D V+ ILVN+FGGIVNCA IA G+ AC+ +L +PLVV
Sbjct: 295 DLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVV 354
Query: 393 RLEGTNVQEGKRILDESKLPLIFASDLDEAA 423
RLEGTNV E + IL S LP+ A DL++AA
Sbjct: 355 RLEGTNVHEAQNILTNSGLPITSAVDLEDAA 385
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 470 AASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 519
A + AC+ +L +PLVVRLEGTNV E + IL S LP+ A DL++AA
Sbjct: 336 ANGITKACRELELKVPLVVRLEGTNVHEAQNILTNSGLPITSAVDLEDAA 385
>pdb|1EUC|B Chain B, Crystal Structure Of Dephosphorylated Pig Heart, Gtp-
Specific Succinyl-Coa Synthetase
Length = 396
Score = 398 bits (1023), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/391 (51%), Positives = 268/391 (68%), Gaps = 33/391 (8%)
Query: 33 ARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHK 92
A A K LN KE V+KAQILAGGRG G F +G K GVH T + + + + ++MIG+
Sbjct: 29 ANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYN 88
Query: 93 LITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKT 152
L TKQTPK G+ VNKVMVA++++I+RETY I+ DR NGPV++ SP GG DIE VAA
Sbjct: 89 LATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASN 148
Query: 153 PHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFL 212
P L+ ID+ +GI +S AQ ++A+ L
Sbjct: 149 PELIFKEQIDIIEGIKDSQAQ---------------------------------RMAENL 175
Query: 213 EFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQK 272
F G L+ +AA +++KL+NLFL +DATQ+E+NP ET E +V+ DAKINFDDNAEFRQK
Sbjct: 176 GFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQK 235
Query: 273 NIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFL 332
+IF+ ++ SE++P E +A+KY+L Y+G+DGNI C VNGAGLAMAT DII L+GG+PANFL
Sbjct: 236 DIFAMDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFL 295
Query: 333 DVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVV 392
D+GGGV E + QAF+++++D V+ ILVN+FGGIVN A IA G+ AC+ +L +PLVV
Sbjct: 296 DLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNXAIIANGITKACRELELKVPLVV 355
Query: 393 RLEGTNVQEGKRILDESKLPLIFASDLDEAA 423
RLEGTNV E + IL S LP+ A DL++AA
Sbjct: 356 RLEGTNVHEAQNILTNSGLPITSAVDLEDAA 386
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 470 AASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 519
A + AC+ +L +PLVVRLEGTNV E + IL S LP+ A DL++AA
Sbjct: 337 ANGITKACRELELKVPLVVRLEGTNVHEAQNILTNSGLPITSAVDLEDAA 386
>pdb|1EUD|B Chain B, Crystal Structure Of Phosphorylated Pig Heart,
Gtp-Specific Succinyl-Coa Synthetase
Length = 396
Score = 394 bits (1011), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/391 (51%), Positives = 267/391 (68%), Gaps = 33/391 (8%)
Query: 33 ARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHK 92
A A K LN KE V+KAQILAGGRG G F +G K GVH T + + + + ++MIG+
Sbjct: 29 ANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYN 88
Query: 93 LITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKT 152
L TKQTPK G+ VNKVMVA++++I+RETY I+ DR NGPV++ SP GG DIE VAA
Sbjct: 89 LATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASN 148
Query: 153 PHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFL 212
P L+ ID+ +GI +S AQ ++A+ L
Sbjct: 149 PELIFKEQIDIIEGIKDSQAQ---------------------------------RMAENL 175
Query: 213 EFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQK 272
F G L+ +AA +++KL+NLFL +DATQ+E+NP ET E +V+ DAKINFDDNAEFRQK
Sbjct: 176 GFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQK 235
Query: 273 NIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFL 332
+IF+ ++ SE++P E +A+KY+L Y+G+DGNI C VNGAGLAMAT DII L+GG+PANFL
Sbjct: 236 DIFAMDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFL 295
Query: 333 DVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVV 392
D+GGGV E + QAF+++++D V+ ILVN+FGGIVN A IA G+ A + +L +PLVV
Sbjct: 296 DLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNXAIIANGITKAXRELELKVPLVV 355
Query: 393 RLEGTNVQEGKRILDESKLPLIFASDLDEAA 423
RLEGTNV E + IL S LP+ A DL++AA
Sbjct: 356 RLEGTNVHEAQNILTNSGLPITSAVDLEDAA 386
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 33/50 (66%)
Query: 470 AASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 519
A + A + +L +PLVVRLEGTNV E + IL S LP+ A DL++AA
Sbjct: 337 ANGITKAXRELELKVPLVVRLEGTNVHEAQNILTNSGLPITSAVDLEDAA 386
>pdb|1SCU|B Chain B, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|1SCU|E Chain E, The Crystal Structure Of Succinyl-Coa Synthetase From
Escherichia Coli At 2.5 Angstroms Resolution
pdb|2SCU|B Chain B, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|2SCU|E Chain E, A Detailed Description Of The Structure Of Succinyl-Coa
Synthetase From Escherichia Coli
pdb|1JKJ|B Chain B, E. Coli Scs
pdb|1JKJ|E Chain E, E. Coli Scs
pdb|2NU6|B Chain B, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU6|E Chain E, C123aa Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|B Chain B, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU7|E Chain E, C123as Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|B Chain B, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU8|E Chain E, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NU9|B Chain B, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|E Chain E, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|G Chain G, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NU9|I Chain I, C123at Mutant Of E. Coli Succinyl-Coa Synthetase
Orthorhombic Crystal Form
pdb|2NUA|B Chain B, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
pdb|2NUA|E Chain E, C123av Mutant Of E. Coli Succinyl-Coa Synthetase
Length = 388
Score = 268 bits (686), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 157/396 (39%), Positives = 219/396 (55%), Gaps = 40/396 (10%)
Query: 34 RTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKL 93
R A + +V+K Q+ AGGRG GV N+ +DI E +G +L
Sbjct: 29 REAEEAASKIGAGPWVVKCQVHAGGRGKA-------GGVKVVNSKEDIRAFAENWLGKRL 81
Query: 94 ITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTP 153
+T QT G VN+++V + +I +E Y V DR V + S GG +IE VA +TP
Sbjct: 82 VTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETP 141
Query: 154 HLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLE 213
HL+ + +D G +++A L +G L VQ+ +F+
Sbjct: 142 HLIHKVALDPLTGPMPYQGRELAFKLGLEGKL-------VQQFTKIFMG----------- 183
Query: 214 FRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKN 273
L +FL D +EINPLV T + ++I +D K+ D NA FRQ +
Sbjct: 184 ---------------LATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPD 228
Query: 274 IFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLD 333
+ + S+ DPRE A+++ LNYV +DGNIGC+VNGAGLAM TMDI+KLHGGEPANFLD
Sbjct: 229 LREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLD 288
Query: 334 VGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVR 393
VGGG +E + +AF+II SD VK +LVN+FGGIV C IA G++ A +++P+VVR
Sbjct: 289 VGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVR 348
Query: 394 LEGTNVQEGKRILDESKLPLIFASDLDEAASLVNAC 429
LEG N + G + L +S L +I A L +AA V A
Sbjct: 349 LEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAA 384
>pdb|1CQI|B Chain B, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQI|E Chain E, Crystal Structure Of The Complex Of Adp And Mg2+ With
Dephosphorylated E. Coli Succinyl-Coa Synthetase
pdb|1CQJ|B Chain B, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
pdb|1CQJ|E Chain E, Crystal Structure Of Dephosphorylated E. Coli Succinyl-Coa
Synthetase
Length = 385
Score = 268 bits (686), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 157/396 (39%), Positives = 219/396 (55%), Gaps = 40/396 (10%)
Query: 34 RTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKL 93
R A + +V+K Q+ AGGRG GV N+ +DI E +G +L
Sbjct: 29 REAEEAASKIGAGPWVVKCQVHAGGRGKA-------GGVKVVNSKEDIRAFAENWLGKRL 81
Query: 94 ITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTP 153
+T QT G VN+++V + +I +E Y V DR V + S GG +IE VA +TP
Sbjct: 82 VTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETP 141
Query: 154 HLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLE 213
HL+ + +D G +++A L +G L VQ+ +F+
Sbjct: 142 HLIHKVALDPLTGPMPYQGRELAFKLGLEGKL-------VQQFTKIFMG----------- 183
Query: 214 FRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKN 273
L +FL D +EINPLV T + ++I +D K+ D NA FRQ +
Sbjct: 184 ---------------LATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPD 228
Query: 274 IFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLD 333
+ + S+ DPRE A+++ LNYV +DGNIGC+VNGAGLAM TMDI+KLHGGEPANFLD
Sbjct: 229 LREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLD 288
Query: 334 VGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVR 393
VGGG +E + +AF+II SD VK +LVN+FGGIV C IA G++ A +++P+VVR
Sbjct: 289 VGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVR 348
Query: 394 LEGTNVQEGKRILDESKLPLIFASDLDEAASLVNAC 429
LEG N + G + L +S L +I A L +AA V A
Sbjct: 349 LEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAA 384
>pdb|1JLL|B Chain B, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
pdb|1JLL|E Chain E, Crystal Structure Analysis Of The E197betaa Mutant Of E.
Coli Scs
Length = 388
Score = 266 bits (680), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 156/396 (39%), Positives = 218/396 (55%), Gaps = 40/396 (10%)
Query: 34 RTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKL 93
R A + +V+K Q+ AGGRG GV N+ +DI E +G +L
Sbjct: 29 REAEEAASKIGAGPWVVKCQVHAGGRGKA-------GGVKVVNSKEDIRAFAENWLGKRL 81
Query: 94 ITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTP 153
+T QT G VN+++V + +I +E Y V DR V + S GG +IE VA +TP
Sbjct: 82 VTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETP 141
Query: 154 HLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLE 213
HL+ + +D G +++A L +G L VQ+ +F+
Sbjct: 142 HLIHKVALDPLTGPMPYQGRELAFKLGLEGKL-------VQQFTKIFMG----------- 183
Query: 214 FRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKN 273
L +FL D + INPLV T + ++I +D K+ D NA FRQ +
Sbjct: 184 ---------------LATIFLERDLALIAINPLVITKQGDLICLDGKLGADGNALFRQPD 228
Query: 274 IFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLD 333
+ + S+ DPRE A+++ LNYV +DGNIGC+VNGAGLAM TMDI+KLHGGEPANFLD
Sbjct: 229 LREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLD 288
Query: 334 VGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVR 393
VGGG +E + +AF+II SD VK +LVN+FGGIV C IA G++ A +++P+VVR
Sbjct: 289 VGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVR 348
Query: 394 LEGTNVQEGKRILDESKLPLIFASDLDEAASLVNAC 429
LEG N + G + L +S L +I A L +AA V A
Sbjct: 349 LEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAA 384
>pdb|3UFX|B Chain B, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|E Chain E, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|G Chain G, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
pdb|3UFX|I Chain I, Thermus Aquaticus Succinyl-coa Synthetase In Complex With
Gdp-mn2+
Length = 397
Score = 212 bits (540), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 131/386 (33%), Positives = 201/386 (52%), Gaps = 50/386 (12%)
Query: 46 KEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQTPKTGINV 105
K VIKAQ+ GGRG GV + Q+ + ++G + G+ V
Sbjct: 40 KRVVIKAQVHVGGRGKA-------GGVKLADTPQEAYEKAQAILGMNI-------KGLTV 85
Query: 106 NKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQ 165
KV+VA++V+I +E Y ++ DR V+++S GG DIE VAA+ P + ID H+
Sbjct: 86 KKVLVAEAVDIAKEYYAGLILDRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDPHK 145
Query: 166 GITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATE 225
G A+++ +G+L + LAQ +
Sbjct: 146 GFRPFEAREMVKRAGLEGNL----------------NKLAQVLV---------------- 173
Query: 226 VQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDP 285
L+ + VDA+ EINPLV T + +++ DAKI DDNA FR ++ EV P
Sbjct: 174 --ALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIVLDDNALFRHPDLAELREVEAEHP 231
Query: 286 REVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQ 345
EV+AS Y YV +DGNIG + NGAGL M T+D++ GG+PANFLD+GGG + +
Sbjct: 232 LEVEASNYGFAYVKLDGNIGIIGNGAGLVMYTLDLVNRVGGKPANFLDIGGGAKADVVYN 291
Query: 346 AFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRI 405
A +++ D +VK + +N+FGGI +AKG++ A + L+ P+V+R+ GT +E K++
Sbjct: 292 ALKVVLKDPDVKGVFINIFGGITRADEVAKGVIRALEEGLLTKPVVMRVAGTAEEEAKKL 351
Query: 406 LDESKLPLIFASDLDEAASLVNACKS 431
L E K ++ + + EAA + A K
Sbjct: 352 L-EGKPVYMYPTSI-EAAKVTVAMKG 375
>pdb|3MWE|A Chain A, Truncated Human Atp-Citrate Lyase With Tartrate Bound
Length = 425
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 98/220 (44%), Gaps = 30/220 (13%)
Query: 217 DLKAKAATEVQKLWNLFLSVDATQLEINPLVET-DEREVISVDAKINFDDNAEFRQKNIF 275
D K A+ + L+N + + T LEINPLV T D V+ + AK+ D A++ K +
Sbjct: 176 DKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKV--DATADYICKVKW 233
Query: 276 SQNEVS-----ESDPRE-----VDA---SKYNLNYVGMDGNIGCLVNGAGLAMATMDIIK 322
E E+ P E +DA + L + G I +V G G ++ D I
Sbjct: 234 GDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTIC 293
Query: 323 LHGG--EPANFLDVGGGVNEESIIQAFRIISS----DSNVKCILVNVFGGIVNCATIA-- 374
GG E AN+ + G +E+ + I S + + ++ + G I N +A
Sbjct: 294 DLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAAT 353
Query: 375 -KGLVNACKSFK-----LSIPLVVRLEGTNVQEGKRILDE 408
KG+V A + ++ + + VR G N QEG R++ E
Sbjct: 354 FKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGE 393
>pdb|3PFF|A Chain A, Truncated Human Atp-Citrate Lyase With Adp And Tartrate
Bound
Length = 829
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 95/220 (43%), Gaps = 30/220 (13%)
Query: 217 DLKAKAATEVQKLWNLFLSVDATQLEINPLVET-DEREVISVDAKINFDDNAEFRQKNIF 275
D K A+ + L+N + + T LEINPLV T D V+ + AK+ D A++ K +
Sbjct: 176 DKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKV--DATADYICKVKW 233
Query: 276 SQNEVS-----ESDPREV--------DASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIK 322
E E+ P E + L + G I +V G G ++ D I
Sbjct: 234 GDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTIC 293
Query: 323 LHGG--EPANFLDVGGGVNEESIIQAFRIISS----DSNVKCILVNVFGGIVNCATIA-- 374
GG E AN+ + G +E+ + I S + + ++ + G I N +A
Sbjct: 294 DLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVAAT 353
Query: 375 -KGLVNACKSFK-----LSIPLVVRLEGTNVQEGKRILDE 408
KG+V A + ++ + + VR G N QEG R++ E
Sbjct: 354 FKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGE 393
>pdb|3MWD|A Chain A, Truncated Human Atp-Citrate Lyase With Citrate Bound
Length = 425
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 93/220 (42%), Gaps = 30/220 (13%)
Query: 217 DLKAKAATEVQKLWNLFLSVDATQLEINPLVET-DEREVISVDAKINFDDNAEFRQKNIF 275
D K A+ + L+N + + T LEINPLV T D V+ + AK+ D A++ K +
Sbjct: 176 DKKEILASFISGLFNFYEDLYFTYLEINPLVVTKDGVYVLDLAAKV--DATADYICKVKW 233
Query: 276 SQNEVS-----ESDPREV--------DASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIK 322
E E+ P E + L + G I V G G ++ D I
Sbjct: 234 GDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTXVAGGGASVVYSDTIC 293
Query: 323 LHGG--EPANFLDVGGGVNEESIIQAFRIISS----DSNVKCILVNVFGGIVNCATIA-- 374
GG E AN+ + G +E+ + I S + + ++ + G I N +A
Sbjct: 294 DLGGVNELANYGEYSGAPSEQQTYDYAKTILSLXTREKHPDGKILIIGGSIANFTNVAAT 353
Query: 375 -KGLVNACKSFK-----LSIPLVVRLEGTNVQEGKRILDE 408
KG+V A + ++ + + VR G N QEG R+ E
Sbjct: 354 FKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVXGE 393
>pdb|2XU2|A Chain A, Crystal Structure Of The Hypothetical Protein Pa4511 From
Pseudomonas Aeruginosa
Length = 252
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 375 KGLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEA 422
+ +++AC +++ +PL+V N +E + DE+ +PL+F + D A
Sbjct: 132 RAVLDACAAYRKGLPLMVLALADNGRE-LELADEADVPLLFEAFADRA 178
>pdb|1S6Y|A Chain A, 2.3a Crystal Structure Of Phospho-Beta-Glucosidase
Length = 450
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 128 RLHNGPV----VIISPSGGTDIENVAAKTPHLVKT--IPIDVHQGITESLAQDIADFLEF 181
R H PV ++ P G +E V A V+ +PI++H + A D ADF+
Sbjct: 30 RYHELPVGELWLVDIPEGKEKLEIVGALAKRXVEKAGVPIEIHLTLDRRRALDGADFVTT 89
Query: 182 Q---GDLKAKAATE 192
Q G L+A+A E
Sbjct: 90 QFRVGGLEARAKDE 103
>pdb|1OSY|A Chain A, Crystal Structure Of Fip-Fve Fungal Immunomodulatory
Protein
pdb|1OSY|B Chain B, Crystal Structure Of Fip-Fve Fungal Immunomodulatory
Protein
Length = 114
Score = 28.5 bits (62), Expect = 9.3, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 307 LVNGAGLAMATMDIIKLHGGEPANFL--DVGGGVNEESIIQAFRIISSDSN 355
+VNG+ L + + + GG+ NFL + G GV + IQ F +I N
Sbjct: 52 VVNGSDLGVESNFAVTPSGGQTINFLQYNKGYGVADTKTIQVFVVIPDTGN 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,587,829
Number of Sequences: 62578
Number of extensions: 595709
Number of successful extensions: 1531
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1484
Number of HSP's gapped (non-prelim): 49
length of query: 525
length of database: 14,973,337
effective HSP length: 103
effective length of query: 422
effective length of database: 8,527,803
effective search space: 3598732866
effective search space used: 3598732866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)