Query psy7785
Match_columns 525
No_of_seqs 279 out of 2542
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 18:48:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7785.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7785hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00124 succinyl-CoA ligase [ 100.0 2.2E-74 4.8E-79 607.1 42.8 390 7-430 26-420 (422)
2 COG0045 SucC Succinyl-CoA synt 100.0 4.7E-74 1E-78 581.5 40.0 377 11-430 3-384 (387)
3 PRK14046 malate--CoA ligase su 100.0 2E-71 4.3E-76 584.1 42.6 380 11-431 3-386 (392)
4 TIGR01016 sucCoAbeta succinyl- 100.0 1.5E-68 3.2E-73 564.3 42.1 376 11-430 3-385 (386)
5 PRK00696 sucC succinyl-CoA syn 100.0 3.1E-68 6.7E-73 562.2 43.4 376 11-430 3-385 (388)
6 PLN02235 ATP citrate (pro-S)-l 100.0 3.1E-65 6.7E-70 530.7 38.5 370 8-429 3-418 (423)
7 KOG1447|consensus 100.0 3.1E-64 6.6E-69 482.5 28.8 384 11-427 22-408 (412)
8 KOG2799|consensus 100.0 1.6E-60 3.5E-65 472.6 16.8 392 5-429 17-414 (434)
9 PF08442 ATP-grasp_2: ATP-gras 100.0 2.1E-41 4.5E-46 325.1 17.5 198 11-248 2-202 (202)
10 PF13549 ATP-grasp_5: ATP-gras 100.0 4.2E-41 9E-46 327.7 16.9 213 5-263 3-222 (222)
11 COG1042 Acyl-CoA synthetase (N 99.9 6.6E-26 1.4E-30 248.0 5.0 422 10-497 23-515 (598)
12 TIGR02717 AcCoA-syn-alpha acet 99.8 5.7E-20 1.2E-24 197.7 16.5 158 267-432 264-446 (447)
13 PF00549 Ligase_CoA: CoA-ligas 99.4 2E-12 4.3E-17 119.0 11.7 119 307-427 1-151 (153)
14 PF01071 GARS_A: Phosphoribosy 99.1 5.5E-10 1.2E-14 106.6 10.4 96 15-130 5-104 (194)
15 COG1042 Acyl-CoA synthetase (N 99.1 4.4E-11 9.6E-16 131.8 3.3 122 9-163 469-593 (598)
16 COG0151 PurD Phosphoribosylami 98.9 3.8E-09 8.3E-14 110.0 9.6 97 14-130 105-204 (428)
17 PRK13789 phosphoribosylamine-- 98.6 1.6E-07 3.5E-12 100.9 11.0 91 19-129 118-208 (426)
18 PF02222 ATP-grasp: ATP-grasp 98.6 1.2E-06 2.6E-11 82.7 15.5 115 19-170 3-117 (172)
19 PLN02257 phosphoribosylamine-- 98.6 2.8E-07 6E-12 99.3 11.0 91 19-129 112-202 (434)
20 PRK01372 ddl D-alanine--D-alan 98.6 3E-06 6.6E-11 86.7 17.6 86 19-130 108-193 (304)
21 PRK12815 carB carbamoyl phosph 98.5 1E-06 2.2E-11 104.8 15.2 132 18-182 137-278 (1068)
22 KOG0237|consensus 98.5 3.6E-07 7.8E-12 97.7 9.2 102 14-134 110-214 (788)
23 PRK13790 phosphoribosylamine-- 98.5 7.3E-07 1.6E-11 94.5 10.7 87 19-129 77-163 (379)
24 PRK00885 phosphoribosylamine-- 98.5 8.8E-07 1.9E-11 95.1 11.0 91 19-129 112-202 (420)
25 TIGR01161 purK phosphoribosyla 98.4 8.4E-06 1.8E-10 85.4 17.5 91 19-138 108-199 (352)
26 PF02786 CPSase_L_D2: Carbamoy 98.4 1.8E-06 3.9E-11 84.2 11.3 130 19-177 11-143 (211)
27 PRK06019 phosphoribosylaminoim 98.4 1.1E-05 2.4E-10 85.2 17.8 91 19-138 110-201 (372)
28 PRK05586 biotin carboxylase; V 98.4 1.6E-05 3.5E-10 86.1 18.2 99 19-138 125-225 (447)
29 TIGR00877 purD phosphoribosyla 98.4 2E-06 4.4E-11 92.2 10.8 90 19-129 114-204 (423)
30 TIGR01369 CPSaseII_lrg carbamo 98.3 5.3E-06 1.2E-10 98.6 14.7 95 19-138 137-231 (1050)
31 TIGR00514 accC acetyl-CoA carb 98.3 2.7E-06 5.8E-11 92.1 11.0 99 19-138 125-225 (449)
32 PRK05294 carB carbamoyl phosph 98.3 5.3E-06 1.1E-10 98.9 14.3 96 18-138 137-232 (1066)
33 PLN02735 carbamoyl-phosphate s 98.3 6.4E-06 1.4E-10 98.0 14.5 88 19-129 154-242 (1102)
34 PRK09288 purT phosphoribosylgl 98.3 3.8E-06 8.3E-11 89.1 11.4 90 19-129 124-213 (395)
35 PRK08591 acetyl-CoA carboxylas 98.3 1.2E-05 2.5E-10 87.1 15.2 99 19-138 125-225 (451)
36 PLN02948 phosphoribosylaminoim 98.3 2.8E-05 6E-10 86.8 18.3 93 19-138 131-224 (577)
37 TIGR02717 AcCoA-syn-alpha acet 98.2 0.0002 4.3E-09 77.7 22.6 212 301-523 150-441 (447)
38 PF13549 ATP-grasp_5: ATP-gras 98.2 1.3E-06 2.8E-11 85.7 5.0 46 445-495 10-58 (222)
39 TIGR01369 CPSaseII_lrg carbamo 98.2 1E-05 2.2E-10 96.2 12.6 87 19-128 679-765 (1050)
40 PLN02735 carbamoyl-phosphate s 98.2 2E-05 4.3E-10 93.9 14.6 95 19-138 712-806 (1102)
41 PRK07178 pyruvate carboxylase 98.2 3E-05 6.6E-10 84.6 14.9 99 19-138 124-224 (472)
42 TIGR01142 purT phosphoribosylg 98.1 1.1E-05 2.3E-10 85.3 10.6 89 19-128 111-199 (380)
43 PRK12833 acetyl-CoA carboxylas 98.1 9.2E-06 2E-10 88.5 10.2 92 19-129 128-221 (467)
44 PRK08654 pyruvate carboxylase 98.1 1.3E-05 2.8E-10 87.9 11.3 99 19-138 125-225 (499)
45 COG0439 AccC Biotin carboxylas 98.1 1.5E-05 3.2E-10 85.7 10.9 99 19-138 125-225 (449)
46 COG0458 CarB Carbamoylphosphat 98.1 2.8E-05 6.2E-10 81.2 12.0 104 14-143 121-224 (400)
47 PRK14569 D-alanyl-alanine synt 98.1 0.00015 3.2E-09 74.3 16.8 82 19-130 108-189 (296)
48 PF13535 ATP-grasp_4: ATP-gras 98.0 2.5E-05 5.4E-10 73.1 9.3 95 19-138 14-108 (184)
49 TIGR02712 urea_carbox urea car 98.0 2.5E-05 5.4E-10 93.7 11.2 99 19-138 124-223 (1201)
50 PRK12815 carB carbamoyl phosph 98.0 4.8E-05 1E-09 90.7 13.6 85 19-129 680-764 (1068)
51 TIGR01205 D_ala_D_alaTIGR D-al 98.0 0.00024 5.2E-09 73.0 17.1 85 19-129 115-205 (315)
52 PF13607 Succ_CoA_lig: Succiny 98.0 6.3E-05 1.4E-09 68.5 11.2 117 302-426 2-135 (138)
53 PRK08462 biotin carboxylase; V 98.0 3.7E-05 7.9E-10 83.2 11.3 99 19-138 127-227 (445)
54 KOG1254|consensus 98.0 7.8E-06 1.7E-10 86.1 5.7 289 47-383 81-435 (600)
55 PRK06111 acetyl-CoA carboxylas 98.0 3.6E-05 7.9E-10 83.2 11.0 99 19-138 125-225 (450)
56 PRK05784 phosphoribosylamine-- 98.0 3.9E-05 8.4E-10 83.9 10.7 91 19-129 119-219 (486)
57 COG0027 PurT Formate-dependent 98.0 3.6E-05 7.9E-10 77.5 9.4 88 19-127 124-211 (394)
58 TIGR01235 pyruv_carbox pyruvat 97.9 0.00016 3.5E-09 86.1 16.3 98 19-137 125-224 (1143)
59 COG0026 PurK Phosphoribosylami 97.9 0.00017 3.6E-09 74.8 14.3 130 12-177 102-234 (375)
60 PRK08463 acetyl-CoA carboxylas 97.9 0.00018 3.8E-09 78.7 14.7 99 19-138 124-225 (478)
61 PF07478 Dala_Dala_lig_C: D-al 97.9 3.6E-05 7.8E-10 74.6 8.2 85 19-129 4-92 (203)
62 PRK14016 cyanophycin synthetas 97.9 4.1E-05 8.9E-10 87.7 9.9 81 19-125 224-305 (727)
63 PRK06395 phosphoribosylamine-- 97.9 8E-05 1.7E-09 80.4 10.9 86 19-130 115-205 (435)
64 TIGR02068 cya_phycin_syn cyano 97.9 5E-05 1.1E-09 88.6 9.8 81 19-125 223-304 (864)
65 PRK05294 carB carbamoyl phosph 97.8 6.9E-05 1.5E-09 89.5 10.6 88 19-129 679-766 (1066)
66 PLN02522 ATP citrate (pro-S)-l 97.8 0.00025 5.3E-09 78.8 13.3 124 301-430 167-314 (608)
67 PRK12999 pyruvate carboxylase; 97.8 0.0003 6.4E-09 84.2 14.8 99 19-138 129-229 (1146)
68 PRK07206 hypothetical protein; 97.7 0.00016 3.4E-09 77.4 10.5 90 19-126 118-209 (416)
69 PRK01966 ddl D-alanyl-alanine 97.7 8.5E-05 1.8E-09 77.4 8.2 83 19-127 133-219 (333)
70 PTZ00187 succinyl-CoA syntheta 97.7 0.00044 9.4E-09 71.2 13.1 123 301-429 169-312 (317)
71 PRK14572 D-alanyl-alanine synt 97.7 0.00013 2.8E-09 76.5 9.2 83 19-127 140-228 (347)
72 PRK10446 ribosomal protein S6 97.7 0.00022 4.9E-09 73.1 10.4 85 19-128 109-196 (300)
73 PRK02186 argininosuccinate lya 97.7 0.00019 4.1E-09 84.2 10.9 85 19-128 117-201 (887)
74 PF08443 RimK: RimK-like ATP-g 97.6 0.00012 2.5E-09 70.1 7.0 83 18-125 12-97 (190)
75 PRK13278 purP 5-formaminoimida 97.6 0.00036 7.8E-09 73.3 10.8 89 19-138 133-221 (358)
76 TIGR01435 glu_cys_lig_rel glut 97.6 0.00023 5.1E-09 80.8 9.8 83 19-127 485-571 (737)
77 TIGR01019 sucCoAalpha succinyl 97.6 0.0009 2E-08 68.2 13.2 121 301-428 143-284 (286)
78 TIGR02144 LysX_arch Lysine bio 97.6 0.00033 7.1E-09 70.7 10.0 86 19-125 97-183 (280)
79 PRK12767 carbamoyl phosphate s 97.6 0.00033 7.1E-09 72.3 9.7 81 19-129 121-203 (326)
80 PRK02471 bifunctional glutamat 97.6 0.00024 5.3E-09 81.5 9.4 81 19-125 498-582 (752)
81 PRK14570 D-alanyl-alanine synt 97.6 0.00032 6.9E-09 74.1 9.6 84 19-128 139-229 (364)
82 PRK05678 succinyl-CoA syntheta 97.6 0.0012 2.7E-08 67.4 13.4 122 301-429 145-287 (291)
83 PRK06524 biotin carboxylase-li 97.5 0.00041 8.9E-09 75.2 10.4 84 19-129 152-239 (493)
84 PRK14568 vanB D-alanine--D-lac 97.5 0.00023 5E-09 74.4 8.1 82 19-128 142-223 (343)
85 PLN00125 Succinyl-CoA ligase [ 97.5 0.0014 3E-08 67.2 13.4 123 301-430 150-294 (300)
86 TIGR00768 rimK_fam alpha-L-glu 97.5 0.00052 1.1E-08 68.7 10.2 84 19-124 98-183 (277)
87 PRK14573 bifunctional D-alanyl 97.5 0.00038 8.3E-09 81.0 10.0 86 19-129 578-670 (809)
88 PRK06091 membrane protein FdrA 97.5 0.0011 2.3E-08 72.6 12.4 119 301-430 193-316 (555)
89 PRK14571 D-alanyl-alanine synt 97.4 0.00054 1.2E-08 70.1 8.5 80 19-128 104-183 (299)
90 PLN00124 succinyl-CoA ligase [ 97.3 0.00034 7.4E-09 74.9 6.6 55 470-524 364-418 (422)
91 COG0074 SucD Succinyl-CoA synt 97.3 0.0053 1.1E-07 61.6 13.4 124 300-429 144-288 (293)
92 COG0045 SucC Succinyl-CoA synt 97.2 0.00057 1.2E-08 71.1 6.4 50 475-524 333-382 (387)
93 PRK00696 sucC succinyl-CoA syn 97.2 0.00066 1.4E-08 72.3 7.1 44 445-492 3-49 (388)
94 KOG1447|consensus 97.1 0.00089 1.9E-08 66.1 6.3 56 469-524 354-409 (412)
95 TIGR03103 trio_acet_GNAT GNAT- 97.1 0.002 4.3E-08 71.6 9.2 80 19-125 307-387 (547)
96 PRK13277 5-formaminoimidazole- 97.1 0.0018 3.8E-08 67.7 8.1 91 19-138 136-228 (366)
97 COG0189 RimK Glutathione synth 97.0 0.0039 8.4E-08 64.6 9.9 85 19-127 129-215 (318)
98 COG0151 PurD Phosphoribosylami 96.9 0.013 2.8E-07 62.0 13.3 117 347-492 16-147 (428)
99 TIGR01016 sucCoAbeta succinyl- 96.9 0.0019 4.1E-08 68.7 6.8 42 445-491 3-48 (386)
100 PRK14046 malate--CoA ligase su 96.8 0.0016 3.5E-08 69.4 5.4 43 445-492 3-49 (392)
101 COG4770 Acetyl/propionyl-CoA c 96.8 0.0068 1.5E-07 65.8 10.0 99 19-138 125-225 (645)
102 PLN02235 ATP citrate (pro-S)-l 96.7 0.0022 4.8E-08 68.3 5.9 42 483-524 369-417 (423)
103 KOG0238|consensus 96.5 0.009 2E-07 63.9 8.5 101 17-138 119-221 (670)
104 PRK06849 hypothetical protein; 96.5 0.011 2.4E-07 62.8 9.1 82 19-128 126-208 (389)
105 COG0439 AccC Biotin carboxylas 96.4 0.025 5.4E-07 61.1 11.1 161 305-503 5-172 (449)
106 PF08442 ATP-grasp_2: ATP-gras 96.3 0.0097 2.1E-07 57.7 6.8 40 446-490 3-46 (202)
107 PRK07178 pyruvate carboxylase 96.3 0.03 6.6E-07 61.2 11.2 158 303-500 4-168 (472)
108 PRK13789 phosphoribosylamine-- 96.2 0.091 2E-06 56.8 14.6 66 403-493 85-153 (426)
109 TIGR00514 accC acetyl-CoA carb 96.2 0.037 8E-07 60.1 11.6 153 302-493 3-162 (449)
110 PRK13790 phosphoribosylamine-- 96.1 0.065 1.4E-06 56.9 12.4 65 403-492 44-111 (379)
111 PRK09288 purT phosphoribosylgl 96.0 0.16 3.4E-06 54.0 14.6 143 303-494 14-160 (395)
112 PRK08654 pyruvate carboxylase 95.9 0.045 9.7E-07 60.3 10.2 157 306-502 6-171 (499)
113 COG3919 Predicted ATP-grasp en 95.8 0.014 3E-07 58.8 5.4 103 14-138 119-223 (415)
114 TIGR01142 purT phosphoribosylg 95.7 0.14 3.1E-06 53.9 13.2 143 303-494 1-147 (380)
115 KOG0370|consensus 95.7 0.0065 1.4E-07 69.0 3.0 132 16-182 505-646 (1435)
116 PRK12833 acetyl-CoA carboxylas 95.7 0.062 1.3E-06 58.7 10.6 153 305-495 8-167 (467)
117 PLN02257 phosphoribosylamine-- 95.6 0.052 1.1E-06 58.7 9.5 68 401-493 77-147 (434)
118 PF15632 ATPgrasp_Ter: ATP-gra 95.6 0.065 1.4E-06 55.8 9.5 93 14-128 112-219 (329)
119 KOG1255|consensus 95.6 0.12 2.5E-06 50.8 10.4 126 299-428 174-321 (329)
120 TIGR00877 purD phosphoribosyla 95.5 0.12 2.6E-06 55.4 11.7 67 402-493 80-150 (423)
121 PRK00885 phosphoribosylamine-- 95.2 0.081 1.8E-06 56.8 9.2 66 403-493 79-147 (420)
122 PRK08591 acetyl-CoA carboxylas 95.2 0.14 3E-06 55.5 10.9 153 303-494 4-163 (451)
123 PRK06395 phosphoribosylamine-- 95.1 0.11 2.3E-06 56.4 9.8 75 403-502 82-160 (435)
124 TIGR02712 urea_carbox urea car 95.1 0.19 4.2E-06 60.9 12.7 150 306-494 5-161 (1201)
125 COG1759 5-formaminoimidazole-4 94.9 0.095 2E-06 53.5 8.0 94 16-138 131-224 (361)
126 PLN02941 inositol-tetrakisphos 94.6 0.085 1.8E-06 54.9 7.0 75 22-125 127-205 (328)
127 KOG0368|consensus 94.1 0.49 1.1E-05 56.8 12.2 84 29-137 224-307 (2196)
128 PRK12458 glutathione synthetas 93.9 0.27 5.9E-06 51.4 9.2 78 22-124 139-220 (338)
129 PRK05586 biotin carboxylase; V 93.9 0.45 9.8E-06 51.6 11.2 151 303-494 4-163 (447)
130 PRK08462 biotin carboxylase; V 93.9 0.23 5.1E-06 53.7 8.9 150 303-493 6-164 (445)
131 PF01071 GARS_A: Phosphoribosy 93.4 0.16 3.5E-06 48.8 5.9 40 449-493 5-48 (194)
132 COG1038 PycA Pyruvate carboxyl 93.3 0.93 2E-05 51.6 12.2 130 19-177 131-263 (1149)
133 PRK08463 acetyl-CoA carboxylas 92.9 0.35 7.6E-06 53.0 8.4 156 306-500 6-169 (478)
134 KOG0369|consensus 92.8 0.32 6.8E-06 54.1 7.6 97 19-136 157-255 (1176)
135 KOG0237|consensus 92.8 1.6 3.4E-05 48.2 12.8 118 346-492 17-153 (788)
136 COG0026 PurK Phosphoribosylami 92.3 4.1 8.9E-05 42.9 14.7 137 303-491 3-142 (375)
137 PF02786 CPSase_L_D2: Carbamoy 92.3 0.059 1.3E-06 52.6 1.2 50 449-503 4-58 (211)
138 PF02601 Exonuc_VII_L: Exonucl 91.9 1.7 3.7E-05 44.9 11.6 111 301-427 14-142 (319)
139 PRK14016 cyanophycin synthetas 91.6 0.15 3.3E-06 58.8 3.7 43 447-494 215-260 (727)
140 COG4770 Acetyl/propionyl-CoA c 91.5 0.34 7.4E-06 53.1 5.9 105 372-504 61-173 (645)
141 PRK06849 hypothetical protein; 91.5 6.1 0.00013 41.9 15.6 154 302-494 5-163 (389)
142 KOG0238|consensus 91.2 0.65 1.4E-05 50.3 7.5 104 373-503 58-168 (670)
143 PRK12999 pyruvate carboxylase; 91.1 0.73 1.6E-05 55.8 8.9 154 305-495 8-168 (1146)
144 PRK01372 ddl D-alanine--D-alan 91.1 0.76 1.6E-05 46.8 7.9 66 403-493 75-143 (304)
145 PRK06111 acetyl-CoA carboxylas 91.1 0.72 1.6E-05 49.9 8.1 68 402-494 91-163 (450)
146 PRK06091 membrane protein FdrA 90.9 5.3 0.00011 44.4 14.5 169 244-431 280-494 (555)
147 TIGR02144 LysX_arch Lysine bio 90.9 1.1 2.5E-05 44.9 8.9 64 403-492 65-131 (280)
148 PRK06524 biotin carboxylase-li 90.9 0.94 2E-05 49.6 8.7 83 387-494 105-192 (493)
149 TIGR01235 pyruv_carbox pyruvat 90.9 0.82 1.8E-05 55.3 8.9 100 374-500 63-169 (1143)
150 COG1181 DdlA D-alanine-D-alani 90.8 0.73 1.6E-05 47.9 7.4 85 19-129 113-201 (317)
151 TIGR01161 purK phosphoribosyla 90.6 0.63 1.4E-05 48.7 7.0 138 304-492 2-142 (352)
152 PRK05784 phosphoribosylamine-- 90.4 1.5 3.3E-05 48.2 9.9 67 403-495 86-156 (486)
153 TIGR02068 cya_phycin_syn cyano 90.2 0.25 5.4E-06 58.2 3.9 44 447-495 214-260 (864)
154 TIGR01380 glut_syn glutathione 89.6 1.5 3.3E-05 45.2 8.7 81 20-125 130-213 (312)
155 TIGR00768 rimK_fam alpha-L-glu 88.9 1.4 3.1E-05 43.8 7.7 65 402-492 65-132 (277)
156 PRK01966 ddl D-alanyl-alanine 88.4 0.97 2.1E-05 47.0 6.4 72 403-498 100-177 (333)
157 PLN02948 phosphoribosylaminoim 88.4 1.8 3.8E-05 48.7 8.7 140 301-491 22-164 (577)
158 KOG0370|consensus 88.3 1.7 3.6E-05 50.4 8.3 114 19-163 1043-1157(1435)
159 PRK05246 glutathione synthetas 88.3 2.4 5.3E-05 43.8 9.1 78 23-125 134-214 (316)
160 PRK14572 D-alanyl-alanine synt 88.2 1.1 2.4E-05 47.0 6.6 70 403-497 107-185 (347)
161 TIGR02291 rimK_rel_E_lig alpha 87.8 3.1 6.7E-05 43.2 9.4 38 19-56 47-86 (317)
162 PRK02471 bifunctional glutamat 87.6 0.53 1.1E-05 54.5 4.0 51 447-501 489-542 (752)
163 PRK14569 D-alanyl-alanine synt 87.2 1.6 3.5E-05 44.6 7.0 64 403-494 75-141 (296)
164 KOG2799|consensus 87.1 0.64 1.4E-05 48.3 3.8 42 482-523 371-412 (434)
165 COG0189 RimK Glutathione synth 87.0 2 4.4E-05 44.6 7.6 66 403-493 97-165 (318)
166 PF02222 ATP-grasp: ATP-grasp 87.0 0.72 1.6E-05 43.6 3.9 32 454-490 1-35 (172)
167 PRK10446 ribosomal protein S6 86.6 2.8 6E-05 42.9 8.3 66 403-493 77-145 (300)
168 PF00549 Ligase_CoA: CoA-ligas 86.5 1.3 2.8E-05 41.0 5.2 39 483-523 108-151 (153)
169 TIGR01435 glu_cys_lig_rel glut 86.1 0.7 1.5E-05 53.1 3.9 52 448-503 477-531 (737)
170 PF11823 DUF3343: Protein of u 85.8 1.9 4.1E-05 34.5 5.3 51 449-509 16-66 (73)
171 PRK14570 D-alanyl-alanine synt 85.7 5.2 0.00011 42.4 10.0 66 404-493 107-181 (364)
172 COG0458 CarB Carbamoylphosphat 84.4 10 0.00023 40.3 11.3 79 405-508 95-186 (400)
173 PRK06019 phosphoribosylaminoim 84.3 1.2 2.6E-05 47.1 4.5 39 449-492 103-144 (372)
174 PRK12419 riboflavin synthase s 82.3 41 0.00089 31.4 13.1 122 303-431 12-149 (158)
175 TIGR00715 precor6x_red precorr 81.5 62 0.0014 32.5 17.5 62 446-522 185-251 (256)
176 PRK14568 vanB D-alanine--D-lac 81.2 3.1 6.8E-05 43.5 6.1 65 403-494 109-176 (343)
177 PF02955 GSH-S_ATP: Prokaryoti 80.8 5.1 0.00011 37.9 6.8 67 24-115 12-79 (173)
178 PRK14573 bifunctional D-alanyl 80.6 3.6 7.7E-05 48.2 6.9 73 403-499 545-626 (809)
179 TIGR01205 D_ala_D_alaTIGR D-al 80.0 6.5 0.00014 40.1 7.9 69 403-493 82-156 (315)
180 PLN02941 inositol-tetrakisphos 79.6 5.4 0.00012 41.6 7.1 64 405-491 87-160 (328)
181 PF13535 ATP-grasp_4: ATP-gras 79.4 3 6.5E-05 38.5 4.8 44 448-496 6-52 (184)
182 TIGR00237 xseA exodeoxyribonuc 79.3 17 0.00036 39.5 11.0 88 301-396 129-228 (432)
183 PRK07206 hypothetical protein; 78.7 7.9 0.00017 41.3 8.4 41 448-493 110-156 (416)
184 PF02655 ATP-grasp_3: ATP-gras 76.6 2.9 6.2E-05 38.7 3.7 28 109-138 65-92 (161)
185 COG0054 RibH Riboflavin syntha 76.0 50 0.0011 30.6 11.4 105 317-431 34-148 (152)
186 PF08443 RimK: RimK-like ATP-g 75.9 3.3 7.1E-05 39.4 4.0 42 449-494 6-50 (190)
187 cd07014 S49_SppA Signal peptid 74.2 13 0.00028 34.9 7.5 62 333-397 17-81 (177)
188 PLN02404 6,7-dimethyl-8-ribity 74.2 71 0.0015 29.2 12.6 117 303-427 9-139 (141)
189 PRK10949 protease 4; Provision 72.7 8.4 0.00018 43.7 6.8 78 301-396 325-405 (618)
190 PRK12767 carbamoyl phosphate s 71.3 24 0.00053 36.0 9.4 41 449-492 114-157 (326)
191 PLN02775 Probable dihydrodipic 70.3 56 0.0012 33.5 11.5 121 303-431 13-148 (286)
192 COG0616 SppA Periplasmic serin 70.3 14 0.00031 38.3 7.4 56 337-396 79-137 (317)
193 PRK00286 xseA exodeoxyribonucl 70.1 37 0.0008 36.7 10.9 87 301-396 135-233 (438)
194 COG0075 Serine-pyruvate aminot 70.1 21 0.00046 38.0 8.7 80 297-383 76-159 (383)
195 KOG0368|consensus 68.7 33 0.00071 42.3 10.4 180 302-500 55-256 (2196)
196 TIGR03103 trio_acet_GNAT GNAT- 68.4 5.1 0.00011 44.8 3.9 41 448-494 299-342 (547)
197 TIGR02313 HpaI-NOT-DapA 2,4-di 67.1 1.5E+02 0.0033 30.2 18.8 169 329-521 9-194 (294)
198 PF00885 DMRL_synthase: 6,7-di 65.7 46 0.001 30.5 8.9 121 303-431 5-139 (144)
199 TIGR00706 SppA_dom signal pept 64.5 28 0.00061 33.6 7.8 59 338-397 13-71 (207)
200 cd00408 DHDPS-like Dihydrodipi 63.3 1.7E+02 0.0037 29.3 19.0 164 330-519 7-187 (281)
201 cd07019 S49_SppA_1 Signal pept 62.8 27 0.00059 33.8 7.3 57 338-397 21-80 (211)
202 PF11379 DUF3182: Protein of u 62.3 20 0.00043 37.4 6.4 81 24-126 114-196 (355)
203 COG0351 ThiD Hydroxymethylpyri 62.2 70 0.0015 32.4 10.2 77 309-391 14-103 (263)
204 PRK02186 argininosuccinate lya 61.6 9.5 0.00021 45.2 4.6 42 448-494 109-153 (887)
205 PF02548 Pantoate_transf: Keto 61.1 85 0.0018 31.7 10.5 80 411-504 84-167 (261)
206 TIGR00705 SppA_67K signal pept 60.8 23 0.00049 40.1 7.2 78 301-396 307-387 (584)
207 PF04472 DUF552: Protein of un 59.9 15 0.00033 29.3 4.1 38 464-504 6-43 (73)
208 TIGR00640 acid_CoA_mut_C methy 59.5 1.3E+02 0.0029 26.9 11.2 104 316-429 21-126 (132)
209 cd07018 S49_SppA_67K_type Sign 58.5 28 0.00061 34.0 6.6 57 337-396 28-87 (222)
210 KOG0369|consensus 58.4 36 0.00077 38.7 7.8 46 450-500 151-201 (1176)
211 PF07478 Dala_Dala_lig_C: D-al 57.2 7.7 0.00017 37.5 2.4 61 453-522 1-65 (203)
212 cd07022 S49_Sppa_36K_type Sign 55.9 55 0.0012 31.7 8.1 62 335-397 22-83 (214)
213 PRK00061 ribH 6,7-dimethyl-8-r 55.4 1.8E+02 0.0038 27.0 13.5 122 302-431 13-148 (154)
214 TIGR00730 conserved hypothetic 54.6 1.9E+02 0.0042 27.3 12.4 120 302-427 31-176 (178)
215 TIGR00114 lumazine-synth 6,7-d 54.5 1.7E+02 0.0037 26.6 12.8 108 315-430 20-135 (138)
216 cd04743 NPD_PKS 2-Nitropropane 54.5 57 0.0012 34.0 8.3 47 377-427 74-121 (320)
217 COG1038 PycA Pyruvate carboxyl 53.9 11 0.00024 43.4 3.2 51 449-504 124-179 (1149)
218 cd07023 S49_Sppa_N_C Signal pe 52.1 57 0.0012 31.3 7.6 58 337-397 16-76 (208)
219 KOG1251|consensus 51.9 89 0.0019 31.5 8.7 99 316-425 135-238 (323)
220 cd00578 L-fuc_L-ara-isomerases 51.1 2.9E+02 0.0063 29.9 13.7 69 339-415 48-131 (452)
221 TIGR02130 dapB_plant dihydrodi 50.8 1.2E+02 0.0027 30.8 9.9 121 303-431 2-137 (275)
222 PLN02417 dihydrodipicolinate s 50.2 2E+02 0.0042 29.1 11.4 102 329-431 10-124 (280)
223 PRK14571 D-alanyl-alanine synt 50.0 63 0.0014 32.8 7.9 63 403-495 72-137 (299)
224 PRK06455 riboflavin synthase; 49.9 1.4E+02 0.003 27.8 9.1 79 314-396 17-100 (155)
225 PF06506 PrpR_N: Propionate ca 49.4 1.8E+02 0.004 27.1 10.4 122 386-523 33-160 (176)
226 cd06270 PBP1_GalS_like Ligand 48.2 1.7E+02 0.0036 28.4 10.4 81 302-389 117-204 (268)
227 cd00394 Clp_protease_like Case 47.9 83 0.0018 28.6 7.7 55 338-397 11-67 (161)
228 COG0329 DapA Dihydrodipicolina 47.7 3.3E+02 0.0071 27.9 18.2 165 331-521 15-197 (299)
229 TIGR01279 DPOR_bchN light-inde 47.7 2.7E+02 0.0059 29.8 12.6 158 332-512 61-227 (407)
230 cd04740 DHOD_1B_like Dihydroor 45.9 2.9E+02 0.0063 27.9 12.0 135 324-503 5-173 (296)
231 TIGR02990 ectoine_eutA ectoine 45.9 95 0.0021 30.9 8.1 100 302-413 121-228 (239)
232 TIGR01506 ribC_arch riboflavin 45.6 2.5E+02 0.0055 26.0 13.2 109 314-431 15-128 (151)
233 cd02067 B12-binding B12 bindin 45.4 2E+02 0.0043 24.7 10.1 100 315-426 17-117 (119)
234 COG0413 PanB Ketopantoate hydr 44.8 1.1E+02 0.0023 31.0 8.1 81 410-504 82-166 (268)
235 PLN02424 ketopantoate hydroxym 44.1 2.5E+02 0.0054 29.4 11.0 14 349-362 49-62 (332)
236 TIGR00222 panB 3-methyl-2-oxob 44.0 3.6E+02 0.0078 27.3 12.1 125 347-504 27-165 (263)
237 TIGR00097 HMP-P_kinase phospho 43.8 1E+02 0.0022 30.4 8.2 77 309-392 9-99 (254)
238 PRK13278 purP 5-formaminoimida 43.7 67 0.0014 34.0 7.0 141 303-494 18-160 (358)
239 PRK08057 cobalt-precorrin-6x r 43.7 72 0.0016 31.9 6.9 62 446-522 178-243 (248)
240 TIGR00683 nanA N-acetylneurami 43.3 3.7E+02 0.0081 27.3 18.9 107 330-439 10-132 (290)
241 PF09413 DUF2007: Domain of un 42.8 26 0.00056 27.1 2.9 51 449-504 14-64 (67)
242 PRK07475 hypothetical protein; 41.9 1.4E+02 0.003 29.7 8.7 26 301-328 122-147 (245)
243 COG1570 XseA Exonuclease VII, 41.2 1.6E+02 0.0034 32.1 9.3 86 301-394 135-232 (440)
244 COG0673 MviM Predicted dehydro 40.7 1.6E+02 0.0035 30.0 9.3 100 303-414 5-122 (342)
245 COG3473 Maleate cis-trans isom 40.3 1.2E+02 0.0026 29.7 7.4 48 338-393 163-210 (238)
246 cd07062 Peptidase_S66_mccF_lik 40.1 1.1E+02 0.0023 31.6 7.8 60 303-362 2-73 (308)
247 COG0027 PurT Formate-dependent 39.7 34 0.00073 35.5 3.8 32 457-493 125-159 (394)
248 PRK00048 dihydrodipicolinate r 39.4 1.8E+02 0.004 28.9 9.2 117 303-430 3-128 (257)
249 PLN02898 HMP-P kinase/thiamin- 39.4 1.1E+02 0.0024 33.7 8.3 84 303-392 11-110 (502)
250 COG3148 Uncharacterized conser 38.9 1.5E+02 0.0033 29.0 7.9 61 346-414 93-158 (231)
251 PF01702 TGT: Queuine tRNA-rib 38.8 1.8E+02 0.0039 28.6 8.9 85 335-422 62-146 (238)
252 KOG1254|consensus 38.8 56 0.0012 35.7 5.5 93 301-397 159-252 (600)
253 cd00951 KDGDH 5-dehydro-4-deox 37.8 3.6E+02 0.0078 27.3 11.2 96 330-430 10-121 (289)
254 PRK03620 5-dehydro-4-deoxygluc 37.7 3.5E+02 0.0075 27.7 11.1 97 329-430 16-128 (303)
255 COG5503 Uncharacterized conser 37.1 30 0.00064 27.3 2.3 32 489-520 24-55 (69)
256 PF00763 THF_DHG_CYH: Tetrahyd 37.0 54 0.0012 28.7 4.3 64 302-366 30-98 (117)
257 cd02072 Glm_B12_BD B12 binding 36.9 3.1E+02 0.0068 24.6 11.7 99 317-426 19-126 (128)
258 cd07025 Peptidase_S66 LD-Carbo 36.3 97 0.0021 31.5 6.7 59 304-362 1-69 (282)
259 cd02071 MM_CoA_mut_B12_BD meth 36.1 2.9E+02 0.0063 24.0 11.3 101 315-425 17-119 (122)
260 cd07020 Clp_protease_NfeD_1 No 35.8 1.3E+02 0.0028 28.5 7.0 50 340-395 15-66 (187)
261 PRK14191 bifunctional 5,10-met 35.7 76 0.0017 32.5 5.7 64 302-366 32-100 (285)
262 cd07021 Clp_protease_NfeD_like 35.2 1.4E+02 0.0031 28.1 7.2 50 342-397 17-68 (178)
263 TIGR00381 cdhD CO dehydrogenas 34.8 6E+02 0.013 27.2 15.7 91 301-397 72-198 (389)
264 PRK14175 bifunctional 5,10-met 34.1 87 0.0019 32.1 5.8 64 302-366 33-101 (286)
265 TIGR01101 V_ATP_synt_F vacuola 34.1 2.6E+02 0.0057 24.6 8.1 60 329-396 34-93 (115)
266 PF00701 DHDPS: Dihydrodipicol 33.8 3.9E+02 0.0085 26.9 10.7 96 331-430 12-123 (289)
267 COG2232 Predicted ATP-dependen 33.7 1.1E+02 0.0024 32.0 6.4 31 106-138 176-206 (389)
268 PRK12616 pyridoxal kinase; Rev 33.7 1.9E+02 0.0041 28.9 8.3 78 309-392 14-106 (270)
269 PF05770 Ins134_P3_kin: Inosit 33.6 57 0.0012 33.8 4.5 73 19-120 110-185 (307)
270 PRK10792 bifunctional 5,10-met 33.3 94 0.002 31.8 5.9 63 303-366 35-102 (285)
271 PRK14176 bifunctional 5,10-met 32.2 91 0.002 32.0 5.6 64 302-366 39-107 (287)
272 PRK14184 bifunctional 5,10-met 32.2 97 0.0021 31.8 5.8 64 302-366 32-100 (286)
273 PRK04147 N-acetylneuraminate l 32.1 5.5E+02 0.012 26.0 18.0 99 329-430 12-126 (293)
274 PF14397 ATPgrasp_ST: Sugar-tr 32.0 1.1E+02 0.0024 31.2 6.2 184 19-257 36-252 (285)
275 PF15632 ATPgrasp_Ter: ATP-gra 31.9 3.1E+02 0.0067 28.7 9.6 110 369-504 50-166 (329)
276 PRK14189 bifunctional 5,10-met 31.9 99 0.0022 31.7 5.8 64 302-366 33-101 (285)
277 PF00532 Peripla_BP_1: Peripla 31.8 1.5E+02 0.0033 29.7 7.3 65 318-389 142-208 (279)
278 PRK14190 bifunctional 5,10-met 31.5 1E+02 0.0022 31.6 5.8 63 302-365 33-100 (284)
279 PRK14166 bifunctional 5,10-met 30.7 1.1E+02 0.0024 31.3 5.9 63 303-366 32-99 (282)
280 PRK14187 bifunctional 5,10-met 30.3 1.1E+02 0.0023 31.6 5.8 64 302-366 33-101 (294)
281 PRK14179 bifunctional 5,10-met 30.1 1.1E+02 0.0023 31.5 5.7 63 302-365 33-100 (284)
282 PRK14180 bifunctional 5,10-met 30.0 1.1E+02 0.0024 31.3 5.7 63 302-365 32-99 (282)
283 PRK14170 bifunctional 5,10-met 30.0 1.1E+02 0.0024 31.4 5.7 64 302-366 32-100 (284)
284 PRK14185 bifunctional 5,10-met 29.8 1.1E+02 0.0024 31.4 5.8 63 302-365 32-99 (293)
285 PRK14174 bifunctional 5,10-met 29.7 1.1E+02 0.0024 31.5 5.7 64 302-366 32-100 (295)
286 PRK14169 bifunctional 5,10-met 29.3 1.2E+02 0.0027 30.9 6.0 64 302-366 31-99 (282)
287 PRK00994 F420-dependent methyl 29.2 3.5E+02 0.0075 27.1 8.7 71 338-414 43-113 (277)
288 PRK14168 bifunctional 5,10-met 28.7 1.2E+02 0.0025 31.4 5.7 64 302-366 34-102 (297)
289 PRK14193 bifunctional 5,10-met 28.6 1.2E+02 0.0026 31.1 5.7 64 302-366 33-101 (284)
290 PRK14171 bifunctional 5,10-met 28.5 1.2E+02 0.0025 31.2 5.7 63 303-366 34-101 (288)
291 PRK14167 bifunctional 5,10-met 28.3 1.2E+02 0.0025 31.4 5.6 64 302-366 32-100 (297)
292 PLN02516 methylenetetrahydrofo 27.9 1.3E+02 0.0028 31.1 5.8 63 303-366 41-108 (299)
293 cd06294 PBP1_ycjW_transcriptio 27.7 4.4E+02 0.0095 25.2 9.6 77 302-385 123-206 (270)
294 PRK11579 putative oxidoreducta 27.6 1.4E+02 0.0029 31.1 6.2 63 344-414 53-119 (346)
295 cd00114 LIGANc NAD+ dependent 27.4 1.5E+02 0.0032 30.7 6.3 56 445-500 227-291 (307)
296 PRK14194 bifunctional 5,10-met 27.4 1.2E+02 0.0026 31.3 5.6 63 302-365 34-101 (301)
297 PRK14178 bifunctional 5,10-met 27.2 1.3E+02 0.0028 30.8 5.7 64 302-366 27-95 (279)
298 PRK14183 bifunctional 5,10-met 27.1 1.3E+02 0.0028 30.8 5.7 64 302-366 32-100 (281)
299 PRK14181 bifunctional 5,10-met 27.1 1.2E+02 0.0027 31.0 5.6 63 302-365 27-94 (287)
300 PRK14182 bifunctional 5,10-met 27.1 1.3E+02 0.0029 30.7 5.8 63 302-365 31-98 (282)
301 PLN02897 tetrahydrofolate dehy 27.1 1.3E+02 0.0028 31.7 5.8 63 303-366 88-155 (345)
302 cd01171 YXKO-related B.subtili 26.9 63 0.0014 31.8 3.4 26 301-326 8-36 (254)
303 PRK14177 bifunctional 5,10-met 26.9 1.3E+02 0.0028 30.8 5.7 64 302-366 34-102 (284)
304 PRK02228 V-type ATP synthase s 26.6 4E+02 0.0086 22.6 7.9 52 340-397 29-80 (100)
305 TIGR02291 rimK_rel_E_lig alpha 26.5 1.3E+02 0.0028 31.4 5.6 52 449-503 40-95 (317)
306 PRK14172 bifunctional 5,10-met 26.4 1.3E+02 0.0028 30.7 5.6 63 303-366 34-101 (278)
307 cd06275 PBP1_PurR Ligand-bindi 26.1 3E+02 0.0066 26.4 8.2 78 302-386 118-202 (269)
308 PF10281 Ish1: Putative stress 25.9 92 0.002 21.5 3.1 28 446-473 5-33 (38)
309 PRK02261 methylaspartate mutas 25.8 4.9E+02 0.011 23.4 12.2 103 316-429 22-133 (137)
310 cd01574 PBP1_LacI Ligand-bindi 25.4 4.3E+02 0.0094 25.2 9.1 75 302-385 117-197 (264)
311 PRK02842 light-independent pro 25.3 6.6E+02 0.014 27.0 11.2 148 340-511 81-238 (427)
312 COG0190 FolD 5,10-methylene-te 25.3 1.6E+02 0.0036 30.1 6.0 64 302-366 31-99 (283)
313 PRK05849 hypothetical protein; 25.2 5.2E+02 0.011 30.5 10.8 103 19-133 22-136 (783)
314 PRK14188 bifunctional 5,10-met 24.5 1.6E+02 0.0034 30.4 5.8 63 302-365 33-100 (296)
315 PRK03659 glutathione-regulated 24.4 7.7E+02 0.017 27.9 11.9 120 389-522 402-527 (601)
316 COG1619 LdcA Uncharacterized p 24.2 5.3E+02 0.011 26.8 9.6 108 300-414 9-128 (313)
317 TIGR00520 asnASE_II L-asparagi 24.1 1.4E+02 0.003 31.5 5.5 46 343-393 93-138 (349)
318 PRK14173 bifunctional 5,10-met 23.9 1.7E+02 0.0037 30.0 5.9 64 302-366 30-98 (287)
319 cd06298 PBP1_CcpA_like Ligand- 23.8 4E+02 0.0086 25.5 8.5 79 302-387 117-202 (268)
320 PRK11096 ansB L-asparaginase I 23.4 4.1E+02 0.0088 28.0 8.8 87 302-393 23-133 (347)
321 TIGR02049 gshA_ferroox glutama 23.3 1.5E+02 0.0032 31.6 5.3 58 48-121 260-317 (403)
322 KOG2741|consensus 23.1 4.3E+02 0.0092 27.9 8.6 60 344-411 61-124 (351)
323 cd06288 PBP1_sucrose_transcrip 23.0 6.6E+02 0.014 23.9 11.3 78 302-386 117-201 (269)
324 KOG3432|consensus 22.9 3.8E+02 0.0082 23.5 6.8 61 328-396 35-95 (121)
325 PF01653 DNA_ligase_aden: NAD- 22.8 1.7E+02 0.0036 30.4 5.7 91 405-497 184-295 (315)
326 PRK03170 dihydrodipicolinate s 22.8 7.9E+02 0.017 24.7 18.8 98 329-430 10-123 (292)
327 cd00950 DHDPS Dihydrodipicolin 22.7 7.7E+02 0.017 24.6 18.0 78 330-411 10-96 (284)
328 PRK11778 putative inner membra 22.6 1.9E+02 0.004 30.4 6.0 37 357-396 124-163 (330)
329 PRK03659 glutathione-regulated 22.6 1.1E+03 0.025 26.5 13.0 108 305-425 403-526 (601)
330 PRK14186 bifunctional 5,10-met 22.2 1.9E+02 0.0041 29.8 5.9 63 303-366 34-101 (297)
331 PF14555 UBA_4: UBA-like domai 22.1 77 0.0017 22.4 2.2 27 490-522 10-36 (43)
332 PRK12378 hypothetical protein; 22.0 2E+02 0.0043 28.6 5.8 59 302-362 166-233 (235)
333 cd06289 PBP1_MalI_like Ligand- 22.0 4.4E+02 0.0096 25.1 8.4 43 337-386 159-202 (268)
334 PF01177 Asp_Glu_race: Asp/Glu 21.7 2.3E+02 0.005 26.8 6.1 62 301-362 107-182 (216)
335 cd08185 Fe-ADH1 Iron-containin 21.5 6.1E+02 0.013 26.7 9.8 75 301-379 25-104 (380)
336 TIGR03249 KdgD 5-dehydro-4-deo 21.5 8.5E+02 0.019 24.6 18.5 155 330-512 15-185 (296)
337 PF01709 Transcrip_reg: Transc 21.4 1.6E+02 0.0034 29.3 4.9 93 267-362 128-232 (234)
338 TIGR00036 dapB dihydrodipicoli 20.7 6.4E+02 0.014 25.2 9.3 118 303-430 3-138 (266)
339 PLN02616 tetrahydrofolate dehy 20.7 2E+02 0.0044 30.5 5.8 47 319-366 126-172 (364)
340 PF01113 DapB_N: Dihydrodipico 20.6 1.3E+02 0.0028 26.4 3.8 101 303-414 2-119 (124)
341 PF01990 ATP-synt_F: ATP synth 20.5 2.7E+02 0.0058 23.2 5.5 50 339-396 26-77 (95)
342 cd06297 PBP1_LacI_like_12 Liga 20.2 5.7E+02 0.012 24.7 8.8 72 319-397 143-218 (269)
343 cd01518 RHOD_YceA Member of th 20.2 3.1E+02 0.0068 22.5 6.0 36 300-337 60-95 (101)
344 cd01979 Pchlide_reductase_N Pc 20.2 1E+03 0.023 25.1 11.6 148 340-512 72-229 (396)
345 cd08170 GlyDH Glycerol dehydro 20.0 7.7E+02 0.017 25.6 10.1 82 301-392 22-106 (351)
346 cd07016 S14_ClpP_1 Caseinolyti 20.0 3.8E+02 0.0082 24.3 7.0 54 338-397 15-68 (160)
No 1
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=100.00 E-value=2.2e-74 Score=607.12 Aligned_cols=390 Identities=48% Similarity=0.784 Sum_probs=366.1
Q ss_pred hhccccHHhhhh---hCCCCCCCccccCCHHHHHHHHHhcC--CCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccH
Q psy7785 7 QQIANFSYLVKP---VSTVHSTDKVCLEDARTATNILKDLN--FKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDI 81 (525)
Q Consensus 7 ~~~~~~e~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg--~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea 81 (525)
+.-.+.||++|+ +||||+|++.++++++||.+++++++ .+|||+|+|++.|||||+||||+++|||+++.+ +++
T Consensus 26 ~~m~l~EyqaK~LL~~~GIpvp~~~va~t~eea~~aa~~l~~~~~pvVvKaqv~~GGRGka~hKs~~~GGV~l~~~-eea 104 (422)
T PLN00124 26 RRLNIHEYQGAELMSKYGVNVPKGAAASSLDEVKKALEKMFPDEGEVVVKSQILAGGRGLGTFKNGLKGGVHIVKK-DKA 104 (422)
T ss_pred cccCCCHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhcccCCcEEEEEEeccCCccccccccccCCeEEECCH-HHH
Confidence 334678899999 89999999999999999999999994 249999999999999999999988999999977 999
Q ss_pred HHHHHHHhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEEEec
Q psy7785 82 PPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPI 161 (525)
Q Consensus 82 ~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~~l 161 (525)
.+++++|+++.+.++++++.|..+++|+|+|++.+++|+|+|+++||...||+|+++..||++||.+++.+||.+.++++
T Consensus 105 ~~aa~~il~~~lvt~qtg~~G~~v~~vlv~e~~~~~~E~ylgi~~Dr~~~gpvil~s~~GGv~IEeva~~~pd~i~~~~i 184 (422)
T PLN00124 105 EELAGKMLGQILVTKQTGPAGKPVNKVYLCEKMSLVNEMYFAILLDRASAGPLIIACSKGGTSIEDLAEKFPEKIIKVPI 184 (422)
T ss_pred HHHHHHHhccchhhcccCCCCceeceEEEEEeecCCceEEEEEEeccccCCcEEEEECCCCccHHHhhhhCchheeEEec
Confidence 99999999998778888788889999999988888999999999999544999976669999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcCCCcee
Q psy7785 162 DVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQL 241 (525)
Q Consensus 162 ~p~~~l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~~~~~l 241 (525)
+|..++++.++++|+.+|++ ++.+.+++.+++.+||++|.+++++++
T Consensus 185 d~~~~l~~~~a~~~~~~L~~---------------------------------~~~~~~~l~~ii~~L~~lf~~~d~~~l 231 (422)
T PLN00124 185 DIFKGITDEDAAKVVDGLAP---------------------------------KVADRNDAIEQVKKLYKLFCKCDCTMV 231 (422)
T ss_pred CcCCCCCHHHHHHHHHHcCC---------------------------------CHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 99999999999999998875 456899999999999999999999999
Q ss_pred eeeceeEecCCcEEEeeeEEEecCCchhccccccccCCCCCCChHhhhhhccCCceeccCCcEEEEecchhHHHHHHHHH
Q psy7785 242 EINPLVETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDII 321 (525)
Q Consensus 242 eiNPl~v~~~g~~~alDa~i~ld~~a~frq~~i~~~~~~~~~~~~E~~a~~~~l~~~~~~~rIaIitnsGG~gvlaaD~~ 321 (525)
|||||+++++|+++|+|||+.+||+|.|||++++..++.++.++.|..+..++++|++++|+||+|+||+|++|.++|++
T Consensus 232 EINPL~vt~~G~~valDAKi~~DdnA~~R~~~~~~~~~~~~~~~~E~~a~~~~l~yv~ldG~Ig~~vnGaGlamaTmD~i 311 (422)
T PLN00124 232 EINPLAETADGQLVAADAKLNFDDNAAFRQKEIFALRDTSQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDII 311 (422)
T ss_pred EeeceEEccCCCEEEEEEEECcCCchhhcChhhhhccCcccCChhHHHHhhCCCceECCCCcEEEEecCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred HHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHH
Q psy7785 322 KLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQE 401 (525)
Q Consensus 322 ~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~ 401 (525)
..+|++|+||+|++|.++.++++++++++++||++++||||+++|+++|+.+|++|+++++++..++|+|+++.|++.++
T Consensus 312 ~~~Gg~pANFlD~GG~a~~~~v~~a~~ii~~d~~vk~iliNIfGGI~~cd~iA~gii~a~~~~~~~~pivvRl~Gtn~~~ 391 (422)
T PLN00124 312 KLHGGSPANFLDVGGNASEQQVVEAFKILTSDDKVKAILVNIFGGIMKCDVIASGIVNAAKQVGLKVPLVVRLEGTNVDQ 391 (422)
T ss_pred HHcCCCcceeeecCCCCCHHHHHHHHHHHhcCCCCcEEEEEecCCccchHHHHHHHHHHHHhcCCCCcEEEEcCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998778899999999999999
Q ss_pred HHHHHhhCCCCccccCCHHHHHHHHHHhh
Q psy7785 402 GKRILDESKLPLIFASDLDEAASLVNACK 430 (525)
Q Consensus 402 ~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~ 430 (525)
++++|++.|+++..++++++|++.+.++.
T Consensus 392 g~~~l~~~~~~~~~~~~l~~A~~~~v~~~ 420 (422)
T PLN00124 392 GKRILKESGMTLITAEDLDDAAEKAVKAL 420 (422)
T ss_pred HHHHHHhCCCCeEEcCCHHHHHHHHHHHh
Confidence 99999999988666799999999987653
No 2
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=4.7e-74 Score=581.46 Aligned_cols=377 Identities=46% Similarity=0.719 Sum_probs=357.3
Q ss_pred ccHHhhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHH
Q psy7785 11 NFSYLVKP---VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEK 87 (525)
Q Consensus 11 ~~e~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~ 87 (525)
+.||++|+ +||||+|++.++++++|+.++++++|.+|+|+|+|+..||||| +|||+++.|++|+.+++++
T Consensus 3 lhEYqaKelf~~~GiPvp~g~v~~s~eea~~~a~~lg~~~~VvKaQV~aGGRGK-------aGGVk~~~s~~ea~~~a~~ 75 (387)
T COG0045 3 LHEYQAKELFAKYGIPVPPGYVATSPEEAEEAAKELGGGPVVVKAQVHAGGRGK-------AGGVKLAKSPEEAKEAAEE 75 (387)
T ss_pred HHHHHHHHHHHHcCCCCCCceeeeCHHHHHHHHHHhCCCcEEEEeeeeecCccc-------cCceEEeCCHHHHHHHHHH
Confidence 57899999 9999999999999999999999999866999999999999999 8999999999999999999
Q ss_pred HhccccccccCCCCCcccCeEEEEeeeCC-ceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEEEecCCCCC
Q psy7785 88 MIGHKLITKQTPKTGINVNKVMVAKSVNI-TRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQG 166 (525)
Q Consensus 88 l~~~~~~~~~~~~~g~~~~~vlVee~~~~-~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~~l~p~~~ 166 (525)
|+++. +|+.+.|..++.+|||+++++ .+|+|+++..||..+.|++|.|..||++||.+++++|+++.+++++|..|
T Consensus 76 ~lg~~---~q~~~~G~~v~~vlvee~~~~~~~E~Ylsiv~DR~~~~p~~~~S~eGGmDIEeVa~~~PekI~k~~idp~~g 152 (387)
T COG0045 76 ILGKN---YQTDIKGEPVNKVLVEEAVDIIKKEYYLSIVLDRSSRRPVLMASTEGGMDIEEVAEKTPEKIVKVSVDPLTG 152 (387)
T ss_pred HhCcc---cccCcCCceeeEEEEEecCCCccceEEEEEEEEcCCCcEEEEEecCCCccHHHhhhhChhheeEEEeCCccC
Confidence 99976 478889999999999999994 45999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcCCCceeeeece
Q psy7785 167 ITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPL 246 (525)
Q Consensus 167 l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~~~~~leiNPl 246 (525)
++++++|+++..+++++ ....++.+++.+||++|.++|++++|||||
T Consensus 153 ~~~~~aR~la~~lgl~~---------------------------------~~~~~~~~ii~~Ly~~f~~~Da~lvEINPL 199 (387)
T COG0045 153 LRPYQARELAFKLGLEG---------------------------------ELVKQVADIIKKLYKLFVEKDATLVEINPL 199 (387)
T ss_pred CCHHHHHHHHHHcCCCH---------------------------------HHHHHHHHHHHHHHHHHHHcCCcEEEeecc
Confidence 99999999999998743 367889999999999999999999999999
Q ss_pred eEecCC-cEEEeeeEEEecCCchhccccccccCCCCCCChHhhhhhccCCceeccCCcEEEEecchhHHHHHHHHHHHcC
Q psy7785 247 VETDER-EVISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHG 325 (525)
Q Consensus 247 ~v~~~g-~~~alDa~i~ld~~a~frq~~i~~~~~~~~~~~~E~~a~~~~l~~~~~~~rIaIitnsGG~gvlaaD~~~~~G 325 (525)
++|++| .++|+|+|+.+|+||+|||+.+..++|.+++++.|..+..+.++|+.+.|+||||.||+|++|.++|.+..+|
T Consensus 200 vvt~~~g~v~aLDaKi~~DdnAlfRHp~~~~~~d~~~ed~~e~~a~~~~l~yV~LdG~IG~ivNGAGLaMaTmDii~~~G 279 (387)
T COG0045 200 VVTPDGGDVLALDAKITLDDNALFRHPDLAELRDESEEDPREAEASGYGLNYVELDGNIGCIVNGAGLAMATMDIVKLYG 279 (387)
T ss_pred EEeCCCCcEEEEeeeeeccCcccccCcchhhhhcccccChhHHHhhhCCCceEEecCcEEEEecChhHHHHHHHHHHHcC
Confidence 999955 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHH
Q psy7785 326 GEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRI 405 (525)
Q Consensus 326 l~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~~ 405 (525)
++|+||+|++|+++.+.+.++++++++||+|++||||+|+|++.|+.+|++|+++.++.+.++|+|+++.|++.++++++
T Consensus 280 g~PANFLDvGGgA~~e~v~~a~~~il~d~~vk~IfVNIfGGI~rcD~vA~GIi~Al~e~~~~vPlVVRL~GtN~e~Gk~i 359 (387)
T COG0045 280 GKPANFLDVGGGATAERVKEAFKLILSDPNVKAIFVNIFGGITRCDEVAEGIIAALKEVGVNVPLVVRLEGTNVEEGKRI 359 (387)
T ss_pred CCCcceeecCCCCCHHHHHHHHHHHhcCCCccEEEEEEccCcCccHHHHHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999997778999999999999999999
Q ss_pred HhhCCCCccccCCHHHHHHHHHHhh
Q psy7785 406 LDESKLPLIFASDLDEAASLVNACK 430 (525)
Q Consensus 406 L~~~Gvpvf~~~s~~~Av~Al~~l~ 430 (525)
|.++|+++...+++.+|+..+.+++
T Consensus 360 L~esg~~i~~~~~l~~aa~k~v~~~ 384 (387)
T COG0045 360 LAESGLNIIAADDLDEAAEKAVELA 384 (387)
T ss_pred HHHcCCceEecccHHHHHHHHHHHh
Confidence 9999954433499999999887664
No 3
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=100.00 E-value=2e-71 Score=584.11 Aligned_cols=380 Identities=42% Similarity=0.653 Sum_probs=355.0
Q ss_pred ccHHhhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHH
Q psy7785 11 NFSYLVKP---VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEK 87 (525)
Q Consensus 11 ~~e~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~ 87 (525)
+.||++|+ +||||||++.+++|++|+.++++++|++|||||+|+..+|||| +|||+++.|++++++++++
T Consensus 3 l~E~eak~lL~~yGIpvp~~~~~~~~~ea~~~a~~lg~p~~VvK~qv~~g~Rgk-------~GGV~l~~~~~e~~~a~~~ 75 (392)
T PRK14046 3 IHEYQAKELLASFGVAVPRGALAYSPEQAVYRARELGGWHWVVKAQIHSGARGK-------AGGIKLCRTYNEVRDAAED 75 (392)
T ss_pred CcHHHHHHHHHHcCCCCCCceEECCHHHHHHHHHHcCCCcEEEEeeeccCCCCc-------CCeEEEECCHHHHHHHHHH
Confidence 56899999 9999999999999999999999999986679999998888888 8999999999999999999
Q ss_pred HhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec-CCCCcccccccccCCCeEEEEecCCCCC
Q psy7785 88 MIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS-PSGGTDIENVAAKTPHLVKTIPIDVHQG 166 (525)
Q Consensus 88 l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g-~~GGv~iE~~~~~~~~~~~~~~l~p~~~ 166 (525)
|+++.+.+++++|.|..+++|+||+|+++++|+|+|+++||.| ||+|++| ..||++||.+..++|+.+.+++++|..+
T Consensus 76 ll~~~~~~~~~~~~g~~v~~vlVe~~~~~~~E~ylgi~~D~~~-g~~v~~~s~~GGv~iEe~~~~~p~~i~~~~i~~~~~ 154 (392)
T PRK14046 76 LLGKKLVTHQTGPEGKPVQRVYVETADPIERELYLGFVLDRKS-ERVRVIASARGGMEIEEIAAKEPEAIIQVVVEPAVG 154 (392)
T ss_pred HhcchhhhhccCCCCCeeeeEEEEEecCCCcEEEEEEEECCCC-CcEEEEEeCCCCCchHHHhhhChhheEEEEcCCCCC
Confidence 9998776778888898999999999999999999999999999 7777774 5899999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcCCCceeeeece
Q psy7785 167 ITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPL 246 (525)
Q Consensus 167 l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~~~~~leiNPl 246 (525)
++++.+++++.+++++ ....+.+.+++.+||++|.++|++++|||||
T Consensus 155 ~~~~~~~~~~~~lg~~---------------------------------~~~~~~~~~~~~~l~~~f~~~d~~l~EINPl 201 (392)
T PRK14046 155 LQQFQAREIAFGLGLD---------------------------------IKQVSRAVKTIMGCYRAFRDLDATMLEINPL 201 (392)
T ss_pred CCHHHHHHHHHHcCCC---------------------------------HHHHHHHHHHHHHHHHHHHhcCcEEEEEEcc
Confidence 9999999999998863 3367889999999999999999999999999
Q ss_pred eEecCCcEEEeeeEEEecCCchhccccccccCCCCCCChHhhhhhccCCceeccCCcEEEEecchhHHHHHHHHHHHcCC
Q psy7785 247 VETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGG 326 (525)
Q Consensus 247 ~v~~~g~~~alDa~i~ld~~a~frq~~i~~~~~~~~~~~~E~~a~~~~l~~~~~~~rIaIitnsGG~gvlaaD~~~~~Gl 326 (525)
+++.+|+++|+|+|+.+||||.|||+.++.+++.++.+++|..+..++++|++++|+||||+||+|++|+++|++..+|+
T Consensus 202 ~~~~~g~~~alD~k~~~Ddna~~r~~~~~~~~~~~~~~~~e~~a~~~~l~yv~l~G~ig~i~nGaGl~m~t~D~i~~~gg 281 (392)
T PRK14046 202 VVTKDDRVLALDAKMSFDDNALFRRPNIAEMRDPSQEDPREAQAAEHGLSYVGLDGDIGCIVNGAGLAMATMDMIKLAGG 281 (392)
T ss_pred eEcCCCcEEEEeeeECccCCchhcChhHHhhcCcccCChhHHHHHHcCCceEccCCcEEEEeCCccHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred CCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHH
Q psy7785 327 EPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRIL 406 (525)
Q Consensus 327 ~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~~L 406 (525)
+++||+|++|.++++.|.++++++++||+||++++++++++..|+.++++|+++.++...+||+++++.|++.++++++|
T Consensus 282 ~paNPlDlgg~a~~e~~~~aL~~ll~Dp~VdaVlv~i~ggi~~~~~vA~~Ii~a~~~~~~~kPvvv~l~G~~~e~~~~iL 361 (392)
T PRK14046 282 EPANFLDVGGGASPERVAKAFRLVLSDRNVKAILVNIFAGINRCDWVAEGVVQAAREVGIDVPLVVRLAGTNVEEGRKIL 361 (392)
T ss_pred CCcCCEEecCCCCHHHHHHHHHHHHcCCCCCEEEEEcCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEcCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999988778889999999999887644689999999887778889999
Q ss_pred hhCCCCccccCCHHHHHHHHHHhhc
Q psy7785 407 DESKLPLIFASDLDEAASLVNACKS 431 (525)
Q Consensus 407 ~~~Gvpvf~~~s~~~Av~Al~~l~~ 431 (525)
+++|+|+|..+++++|++.+.++.+
T Consensus 362 ~~~Gipvf~~~~~~~a~~~~v~~~~ 386 (392)
T PRK14046 362 AESGLPIITADTLAEAAEKAVEAWK 386 (392)
T ss_pred HHcCCCeeecCCHHHHHHHHHHHHh
Confidence 9999999999999999999987653
No 4
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=100.00 E-value=1.5e-68 Score=564.33 Aligned_cols=376 Identities=44% Similarity=0.703 Sum_probs=347.5
Q ss_pred ccHHhhhh---hCCCCCCCccccCCHHHHHHHHHhcC-CCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHH
Q psy7785 11 NFSYLVKP---VSTVHSTDKVCLEDARTATNILKDLN-FKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILE 86 (525)
Q Consensus 11 ~~e~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg-~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~ 86 (525)
+.||++|+ +||||||++.++++++|+.++++++| | |||||+++..+|||| .|||+++.|++++.++++
T Consensus 3 L~E~~aK~ll~~~GIpvp~~~~~~~~~ea~~~~~~ig~~-PvVvK~~~~~ggkg~-------~GGV~~~~~~~e~~~a~~ 74 (386)
T TIGR01016 3 LHEYQAKQIFAKYGIPVPRGYVATSVEEAEEIAAKLGAG-PVVVKAQVHAGGRGK-------AGGVKVAKSKEEARAAAE 74 (386)
T ss_pred CcHHHHHHHHHHcCCCCCCceeeCCHHHHHHHHHHhCCC-cEEEEecccCCCCcc-------CceEEEeCCHHHHHHHHH
Confidence 56899998 89999999999999999999999999 7 999999987777777 899999999999999999
Q ss_pred HHhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC-CCccEEEecCCCCcccccccccCCCeEEEEecCCCC
Q psy7785 87 KMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRL-HNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQ 165 (525)
Q Consensus 87 ~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~-f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~~l~p~~ 165 (525)
+++++.+.+++++++|..+++|+||+|+++++|+|+|+++|+. | ||+|+||..||++||.+++++|+.+.++.++|..
T Consensus 75 ~l~~~~~~~~~~~~~g~~~~~vlVEe~v~~g~E~~v~i~~d~~~~-~pvi~~~~~GGv~iE~~~~~~p~~i~~~~i~p~~ 153 (386)
T TIGR01016 75 KLLGKELVTNQTDPLGQPVNKILIEEATDIDKEYYLSIVIDRSAR-CPVIMASTEGGVDIEEVAEKSPEKIIKYAIDPLT 153 (386)
T ss_pred HHhccceeecccCCCCCEeeEEEEEECccCCceEEEEEEEcCCCC-ceEEEEECCCCccHHHHhhhCccceEEEEcCCCc
Confidence 9998666555444457778999999999999999999999998 7 9999999999999999999999999999999988
Q ss_pred CCCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcCCCceeeeec
Q psy7785 166 GITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINP 245 (525)
Q Consensus 166 ~l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~~~~~leiNP 245 (525)
+++.++++.++..+++ |+.+.+++.+++.+||++|.+++++++||||
T Consensus 154 ~~~~~~a~~~~~~l~~---------------------------------~~~~~~~l~~~l~~l~~~~~~~~~~~lEINP 200 (386)
T TIGR01016 154 GLLPYQAREIAKKLGL---------------------------------EGELVKQVADIIKKLYQIFLEYDASLVEINP 200 (386)
T ss_pred CCCHHHHHHHHHHcCC---------------------------------CHHHHHHHHHHHHHHHHHHHhCCceEEEeee
Confidence 9999999999887664 6679999999999999999999999999999
Q ss_pred eeEecCCcEEEeeeEEEecCCchhccccccccCCCCCCChHhhhhhccCCceeccCCcEEEEecchhHHHHHHHHHHHcC
Q psy7785 246 LVETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHG 325 (525)
Q Consensus 246 l~v~~~g~~~alDa~i~ld~~a~frq~~i~~~~~~~~~~~~E~~a~~~~l~~~~~~~rIaIitnsGG~gvlaaD~~~~~G 325 (525)
|+++++|+++|+|+|+.+||+|.|||+.+..+++.++.++.|..+.+++++|++++||||||+||||++|+++|++..+|
T Consensus 201 l~v~~~g~~~a~Daki~~dd~a~~r~~~~~~~~~~~~~~~~e~~~~~~~l~~v~l~G~i~~i~nG~Gl~~~t~D~~~~~g 280 (386)
T TIGR01016 201 LVITKDGNLIALDAKLTIDDNALFRHPDLEEMRDYSQEDPREVLAKQWGLNYVALDGNIGCMVNGAGLAMATMDIIKLYG 280 (386)
T ss_pred eEEcCCCCEEEEeeeEeeccchhhhcHHHHHhhcCCcCChhhhHHHHcCCcEEccCCcEEEEECCccHHHHHHHHHHHcC
Confidence 99999988999999999999999999999988888888999999999999999999999999999999999999999999
Q ss_pred CCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHH
Q psy7785 326 GEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRI 405 (525)
Q Consensus 326 l~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~~ 405 (525)
++++||+|++|.++++.|.++++++++||++|+++++++++...|+.++++|+++.+++..+||+++++.|++.++++++
T Consensus 281 ~~~aNplDlgg~a~~~~~~~al~~l~~dp~vd~ilv~i~gg~~~~~~va~~i~~a~~~~~~~kPvvv~~~g~~~~~~~~~ 360 (386)
T TIGR01016 281 GEPANFLDVGGGASAERVREALKLVLSDKSVKVVFINIFGGITRCDLVAKGLVEALKEVGVNVPVVVRLEGTNVEEGKKI 360 (386)
T ss_pred CCCCCcEEecCCCCHHHHHHHHHHHHcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeCCccHHHHHHH
Confidence 99999999999999999999999999999999999988888888999999999998874345999999988777888899
Q ss_pred HhhCC--CCccccCCHHHHHHHHHHhh
Q psy7785 406 LDESK--LPLIFASDLDEAASLVNACK 430 (525)
Q Consensus 406 L~~~G--vpvf~~~s~~~Av~Al~~l~ 430 (525)
|+++| ||+| ++|++|++++.++.
T Consensus 361 L~~~G~~ip~~--~~~~~Av~~~~~~~ 385 (386)
T TIGR01016 361 LAESGLNIIFA--TSMEEAAEKAVEAA 385 (386)
T ss_pred HHHcCCCcccc--CCHHHHHHHHHHhh
Confidence 99999 9999 99999999988653
No 5
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=100.00 E-value=3.1e-68 Score=562.22 Aligned_cols=376 Identities=46% Similarity=0.704 Sum_probs=342.0
Q ss_pred ccHHhhhh---hCCCCCCCccccCCHHHHHHHHHhc-CCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHH
Q psy7785 11 NFSYLVKP---VSTVHSTDKVCLEDARTATNILKDL-NFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILE 86 (525)
Q Consensus 11 ~~e~~~k~---~~GIpvp~~~~~~~~eea~~~a~~l-g~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~ 86 (525)
+.||++|+ +||||+|++.++++++|+.++++++ || |||+|++...+||+| +|||+++.|.++++++++
T Consensus 3 l~e~~ak~lL~~~gIpvp~~~~~~~~~ea~~~a~~i~g~-PvVvK~~~~~ggk~~-------~GGV~l~~~~~e~~~a~~ 74 (388)
T PRK00696 3 LHEYQAKELFAKYGVPVPRGIVATTPEEAVEAAEELGGG-VWVVKAQVHAGGRGK-------AGGVKLAKSPEEAREFAK 74 (388)
T ss_pred CCHHHHHHHHHHcCCCCCCCeeeCCHHHHHHHHHHcCCC-cEEEEEeeCCCCCcc-------cccEEEcCCHHHHHHHHH
Confidence 56899998 8999999999999999999999999 87 999999987777766 899999999999999999
Q ss_pred HHhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEE-ecCCCCcccccccccCCCeEEEEecCCCC
Q psy7785 87 KMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVI-ISPSGGTDIENVAAKTPHLVKTIPIDVHQ 165 (525)
Q Consensus 87 ~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~-~g~~GGv~iE~~~~~~~~~~~~~~l~p~~ 165 (525)
+|+.+.+.++++++.|..+.+|+||+|++++.|+|+|+++||.| ||+|+ +|..||+++|.++|++|+++.++.++|..
T Consensus 75 ~i~~~~~~~~~~~~~g~~~~gvlVe~~~~~~~E~~vg~~~D~~f-gpvv~~~s~~GG~~vE~~~d~~~~~~~~~~l~p~~ 153 (388)
T PRK00696 75 QILGMTLVTHQTGPKGQPVNKVLVEEGADIAKEYYLSIVLDRAT-RRVVFMASTEGGMDIEEVAEETPEKIHKVAIDPLT 153 (388)
T ss_pred HhhccceeeeccCCCCCEEeEEEEEeccCCCceEEEEEEEcCCC-CceEEEEeCCCCcchhhhcccCcceeEEEEcCCCC
Confidence 99977543444455677789999999999999999999999999 78875 65689999999999999988889999988
Q ss_pred CCCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcCCCceeeeec
Q psy7785 166 GITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINP 245 (525)
Q Consensus 166 ~l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~~~~~leiNP 245 (525)
+++..+|++|+.+++. |+.|++++.+++.+||++|.+++++++||||
T Consensus 154 ~~~~~~a~~~~~~~~~---------------------------------~~~~~~~l~~~l~~l~~l~~~~~~~~leiNP 200 (388)
T PRK00696 154 GLQPFQAREIAFKLGL---------------------------------PGEQVKQFAKILMGLYKAFVEKDASLVEINP 200 (388)
T ss_pred CCCHHHHHHHHHHcCC---------------------------------CHHHHHHHHHHHHHHHHHHHhCCccEEEEec
Confidence 8899999999998764 6779999999999999999999999999999
Q ss_pred eeEecCCcEEEeeeEEEecCCchhccccccccCCCCCCChHhhhhhccCCceeccCCcEEEEecchhHHHHHHHHHHHcC
Q psy7785 246 LVETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHG 325 (525)
Q Consensus 246 l~v~~~g~~~alDa~i~ld~~a~frq~~i~~~~~~~~~~~~E~~a~~~~l~~~~~~~rIaIitnsGG~gvlaaD~~~~~G 325 (525)
|+++++|+++|+|+|+.+|+++.|||+++.++++..+.++.|..+..++++|+++++||+|||||||+|++++|+++.+|
T Consensus 201 l~v~~~g~~~a~Dak~~ld~~a~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~v~l~~~i~ii~ng~G~~~~~~D~l~~~g 280 (388)
T PRK00696 201 LVVTKDGDLIALDAKINFDDNALFRHPDLAELRDLSEEDPLEAEASKYGLNYVKLDGNIGCMVNGAGLAMATMDIIKLYG 280 (388)
T ss_pred eEECCCCcEEEEeeEEeecCCccccCHhHHhhcCCCcCChhhhHHHhcCCcEEecCCcEEEEECCchHHHHHHHHHHHcC
Confidence 99999988999999999999999999999999888878899999999999999999999999999999999999999999
Q ss_pred CCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHH
Q psy7785 326 GEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRI 405 (525)
Q Consensus 326 l~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~~ 405 (525)
++++||+|++|..+++.|.++++++++||++|+++++++++...++.++++|+++.++.+.+||+++++.|...++.+++
T Consensus 281 ~~~~NPvDl~g~~~~e~~~~aL~~l~~d~~vd~vlv~~~~~~~~~~~va~~i~~~~~~~~~~kPvv~~~~g~~~~~~~~~ 360 (388)
T PRK00696 281 GEPANFLDVGGGATAERVAEAFKIILSDPNVKAILVNIFGGITRCDVIAEGIIAAVKEVGVTVPLVVRLEGTNVELGKKI 360 (388)
T ss_pred CCcCCeEEecCCCCHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeCCCCHHHHHHH
Confidence 99999999999999999999999999999999999987766777888999999987753468999888888667778888
Q ss_pred HhhCC--CCccccCCHHHHHHHHHHhh
Q psy7785 406 LDESK--LPLIFASDLDEAASLVNACK 430 (525)
Q Consensus 406 L~~~G--vpvf~~~s~~~Av~Al~~l~ 430 (525)
|+++| +|+| ++|++|++++.++.
T Consensus 361 L~~~Gi~ip~f--~~pe~A~~al~~~~ 385 (388)
T PRK00696 361 LAESGLNIIAA--DTLDDAAQKAVEAA 385 (388)
T ss_pred HHHCCCCceec--CCHHHHHHHHHHHh
Confidence 99999 7799 99999999998765
No 6
>PLN02235 ATP citrate (pro-S)-lyase
Probab=100.00 E-value=3.1e-65 Score=530.67 Aligned_cols=370 Identities=21% Similarity=0.321 Sum_probs=333.8
Q ss_pred hccccHHhhhh---hC-----CCCCCCcccc-CCHHHHHHHHHh---cCCCcEEEEEeeccccCCCCCccCCCcceEEEe
Q psy7785 8 QIANFSYLVKP---VS-----TVHSTDKVCL-EDARTATNILKD---LNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFT 75 (525)
Q Consensus 8 ~~~~~e~~~k~---~~-----GIpvp~~~~~-~~~eea~~~a~~---lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~ 75 (525)
+..+.||++|+ +| |||+|++.++ ++++|+.+++++ +|.+++|||+|++.||||| .|||+++
T Consensus 3 ~~~l~EyqaK~ll~~~~~~~~gipvP~~~v~~~~~ee~~~~~~~~~~l~~~~~VVKaQvl~GgRGK-------aGGVk~~ 75 (423)
T PLN02235 3 RKKIREYDSKRLLKEHLKRLAGIDLPIRSAQVTESTDFNELANKEPWLSSTKLVVKPDMLFGKRGK-------SGLVALN 75 (423)
T ss_pred cccccHHHHHHHHHHhhcccCCCCCCCCeeccCCHHHHHHHHHhhhhhCCCcEEEEcccccCCCcc-------cCceEEe
Confidence 45688999999 77 9999999999 999999999988 8865679999999999999 8999999
Q ss_pred CCcccHHHHHHHHhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCe
Q psy7785 76 NNVQDIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHL 155 (525)
Q Consensus 76 ~~~eea~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~ 155 (525)
.|++|+++.+++|+++.+.++ +++| .+++|||||++++.+|+|++++.|+... .|++|..||++||. +|+.
T Consensus 76 ~s~~Ea~~~a~~~Lg~~l~t~--g~~G-~v~~vLVEe~v~i~~E~Ylsi~~DR~~~--~ii~S~~GGvdIEe----~pe~ 146 (423)
T PLN02235 76 LDLAQVATFVKERLGKEVEMG--GCKG-PITTFIVEPFVPHDQEFYLSIVSDRLGC--SISFSECGGIEIEE----NWDK 146 (423)
T ss_pred CCHHHHHHHHHHHhCCceEec--CCCc-cEeEEEEEecCCCcceEEEEEEEecCCC--EEEEECCCCCcccC----ChhH
Confidence 999999999999999988654 6678 7999999999999999999999999983 49999999999996 6889
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhc
Q psy7785 156 VKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLS 235 (525)
Q Consensus 156 ~~~~~l~p~~~l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~ 235 (525)
+.+++++|..+++++.+++++..++. ...+.+.+++.+||++|.+
T Consensus 147 i~k~~Id~~~gl~~~~~~~~~~~l~~-----------------------------------~~~~~~~~~l~~Ly~~F~~ 191 (423)
T PLN02235 147 VKTIFLPTEAPLTSEICAPLIATLPL-----------------------------------EIRGKIEEFIKGVFAVFQD 191 (423)
T ss_pred eEEEEcCCCCCCCHHHHHHHHHhCCH-----------------------------------HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887642 2467789999999999999
Q ss_pred CCCceeeeeceeEecCCcEEEeeeEEEecCCchhcccc-ccccCC----CCCCChHhh------hhhccCCce--eccCC
Q psy7785 236 VDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKN-IFSQNE----VSESDPREV------DASKYNLNY--VGMDG 302 (525)
Q Consensus 236 ~~~~~leiNPl~v~~~g~~~alDa~i~ld~~a~frq~~-i~~~~~----~~~~~~~E~------~a~~~~l~~--~~~~~ 302 (525)
+|++++|||||++ .+|+++|+|+++.+||||.|||+. +..... -.+.+++|. .+..++++| ++++|
T Consensus 192 ~D~tllEINPLv~-~dg~~~alDaK~~~DDnA~fR~~~~~~~~~f~~~fgr~~~~~E~~~~~~d~a~~~~l~y~~v~ldG 270 (423)
T PLN02235 192 LDFTFLEMNPFTL-VDGEPYPLDMRGELDDTAAFKNFKKWGNIEFPLPFGRVMSPTESFIHGLDEKTSASLKFTVLNPKG 270 (423)
T ss_pred cCCeEEEecceEe-eCCCEEEEEeEEcccCCCcccCHhHhhhhcccccccCCCCHHHHhhccchhhhccCCceEEeCCCC
Confidence 9999999999999 888999999999999999999997 543310 123478888 666788999 89999
Q ss_pred cEEEEecchhHHHHHHHHHHHcC--CCCCCeeeecCCCCHHHHHHHHHHHh----cCCCccEEEEEecccccChHHHH--
Q psy7785 303 NIGCLVNGAGLAMATMDIIKLHG--GEPANFLDVGGGVNEESIIQAFRIIS----SDSNVKCILVNVFGGIVNCATIA-- 374 (525)
Q Consensus 303 rIaIitnsGG~gvlaaD~~~~~G--l~~aNPlDl~g~a~~~~~~~al~~ll----~dp~vd~vlv~~~~~~~~~~~ia-- 374 (525)
+||+|+||||++|.++|.+..+| ++|+||+|++|+++.+++++++++++ +||++++++||+++|+++|+.+|
T Consensus 271 ~Ig~mvnGAGlamaTmD~I~~~G~~g~pANFlDvGG~a~~e~v~~a~~iil~~~~~~~~vk~ilvnIfGGI~rcd~VA~t 350 (423)
T PLN02235 271 RIWTMVAGGGASVIYADTVGDLGYASELGNYAEYSGAPNEEEVLQYARVVIDCATANPDGRKRALLIGGGIANFTDVAAT 350 (423)
T ss_pred eEEEEecCcHHHHHHHHHHHHcCCCCCCceeeecCCCCCHHHHHHHHHHHHhhhhcCCCCcEEEEEEecccccchhhhhh
Confidence 99999999999999999999999 89999999999999999999999998 89999999999999999999999
Q ss_pred -HHHHHHHHhcC-----CCCcEEEEeCCcchHHHHHHHh----hCCCCccccC---CHHHHHHHHHHh
Q psy7785 375 -KGLVNACKSFK-----LSIPLVVRLEGTNVQEGKRILD----ESKLPLIFAS---DLDEAASLVNAC 429 (525)
Q Consensus 375 -~~i~~a~~~~~-----~~kPivv~~~g~~~~~~~~~L~----~~Gvpvf~~~---s~~~Av~Al~~l 429 (525)
++|+++.++++ .++||++++.|++.++++++|+ +.|+|+..++ ++++|++.+..|
T Consensus 351 f~GIi~A~~e~~~kl~~~~vpivVRl~GtN~eeG~~il~e~~~~~gl~i~~~~~~~~m~~a~~~av~~ 418 (423)
T PLN02235 351 FNGIIRALREKESKLKAARMHIFVRRGGPNYQKGLAKMRALGEEIGVPIEVYGPEATMTGICKQAIDY 418 (423)
T ss_pred hhHHHHHHHHhhhccccCCccEEEECCCCCHHHHHHHHHHhHHhcCCcEEEeCCCCCHHHHHHHHHhh
Confidence 99999999864 4789999999999999999998 8898776667 999999988764
No 7
>KOG1447|consensus
Probab=100.00 E-value=3.1e-64 Score=482.51 Aligned_cols=384 Identities=60% Similarity=0.933 Sum_probs=367.8
Q ss_pred ccHHhhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHH
Q psy7785 11 NFSYLVKP---VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEK 87 (525)
Q Consensus 11 ~~e~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~ 87 (525)
+.||++|+ +||+.+-+..++.+..|+.+++++++.+.+|+|+|+++|||||+.|.++..|||++..++..+-+.+++
T Consensus 22 LqEfQSK~~l~k~Gv~vQ~F~Va~n~kea~E~~k~f~~~EyVvKAQILAGGRGKG~F~nG~KGGVhiTk~k~~vl~l~~q 101 (412)
T KOG1447|consen 22 LQEFQSKEILSKNGVRVQRFFVADNAKEALEAAKRFNAKEYVVKAQILAGGRGKGVFNNGLKGGVHITKDKNVVLQLAKQ 101 (412)
T ss_pred HHHhhhHHHHHhcCeeEEEEEEecCcHHHHHHHHhcCCcceEEeeeeeecCcccceecCCccceeEEecCHhHHHHHHHH
Confidence 45699999 899999999999999999999999998789999999999999999999999999999999999999999
Q ss_pred HhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEEEecCCCCCC
Q psy7785 88 MIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGI 167 (525)
Q Consensus 88 l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~~l~p~~~l 167 (525)
|++..+.+++++..|..++.|+|.+-+++.+|.|+.+..|++..||+++.|+.||++||.++.++|+.+++.|||...|+
T Consensus 102 MIG~rL~TKQTpkeGv~VnKVMvAe~~dI~RETYLaiLmDRe~NGPVlvaSP~GGmDIEaVAe~tPE~Ifk~piDI~~gi 181 (412)
T KOG1447|consen 102 MIGYRLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRECNGPVLVASPQGGMDIEAVAESTPELIFKEPIDIFEGI 181 (412)
T ss_pred HHhhhhhhccCCccceeeeeEEEeeccccchheeeeeeeccccCCCEEEecCCCCccHHHHhhhChHhhccccchhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcCCCceeeeecee
Q psy7785 168 TESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLV 247 (525)
Q Consensus 168 ~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~~~~~leiNPl~ 247 (525)
+++.+.+|.+.|++.|. .+...++.+.+||.+|...|.+.+|||||.
T Consensus 182 ~esq~l~~Ak~L~F~G~---------------------------------l~~~aA~eI~kLY~LF~avDAtQvEiNPl~ 228 (412)
T KOG1447|consen 182 KESQALRMAKNLGFVGP---------------------------------LKSQAADEITKLYNLFLAVDATQVEINPLG 228 (412)
T ss_pred chHHHHHHHHhccccCc---------------------------------HHHHHHHHHHHHHHHHhhhcceEEEecccc
Confidence 99999999999887544 567788999999999999999999999999
Q ss_pred EecCCcEEEeeeEEEecCCchhccccccccCCCCCCChHhhhhhccCCceeccCCcEEEEecchhHHHHHHHHHHHcCCC
Q psy7785 248 ETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGE 327 (525)
Q Consensus 248 v~~~g~~~alDa~i~ld~~a~frq~~i~~~~~~~~~~~~E~~a~~~~l~~~~~~~rIaIitnsGG~gvlaaD~~~~~Gl~ 327 (525)
-|++|+++++||+|.+||++.|||++|+...+.+|.+|.|.++.+++++|+-+.|+|+++.||.|++|.++|.+..+|++
T Consensus 229 ET~~G~V~cvDAK~NFDDnA~fRQKdIFamd~~eE~dPrEveAakynLnYigmDGNIaClVNGAGLAMATmDiIkLnGGe 308 (412)
T KOG1447|consen 229 ETPEGQVVCVDAKINFDDNAEFRQKDIFAMDDKEENDPREVEAAKYNLNYIGMDGNIACLVNGAGLAMATMDIIKLNGGE 308 (412)
T ss_pred cCCCceEEEEeeeccCCchHhhhhcceeecccccccCchhhhhhhcCcceeeccCceEEEEccchhhhheeeeEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHHh
Q psy7785 328 PANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRILD 407 (525)
Q Consensus 328 ~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~~L~ 407 (525)
|+||+|++|.+..++++++++++.+||.|.+++||+|+|+.+|..+|.+|+.++++...+.|+|+++.|++..++.++|.
T Consensus 309 PANFLDvGGgV~EdqV~~Af~ilTaDPkVk~iLvNiFGGIVNCAtIANGiv~A~~kl~LnVPlVVRLEGTNV~~A~~Ilk 388 (412)
T KOG1447|consen 309 PANFLDVGGGVKEDQVYQAFKILTADPKVKAILVNIFGGIVNCATIANGIVKACRKLELNVPLVVRLEGTNVQEAQKILK 388 (412)
T ss_pred CcceeeccCcccHHHHHHHhhhhccCCceeEEEEehhcceehhHhHhhHHHHHHHhhcCCCcEEEEEcCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888999999999999999999999
Q ss_pred hCCCCccccCCHHHHHHHHH
Q psy7785 408 ESKLPLIFASDLDEAASLVN 427 (525)
Q Consensus 408 ~~Gvpvf~~~s~~~Av~Al~ 427 (525)
..|+|+....+.++|+....
T Consensus 389 ~SGLpI~tA~dLddAA~KAV 408 (412)
T KOG1447|consen 389 KSGLPITTAIDLDDAAKKAV 408 (412)
T ss_pred hcCCceeeccchHHHHHHHh
Confidence 99999987778888776654
No 8
>KOG2799|consensus
Probab=100.00 E-value=1.6e-60 Score=472.55 Aligned_cols=392 Identities=47% Similarity=0.726 Sum_probs=369.4
Q ss_pred hhhhccccH--Hhhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcc
Q psy7785 5 FNQQIANFS--YLVKP---VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQ 79 (525)
Q Consensus 5 ~~~~~~~~e--~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~e 79 (525)
|+|.|.+.- |.+.+ +|||.+|++.+++|+|||.++++++|..-+|+|+|++++||||++|+|+..|||++..+|+
T Consensus 17 ~~~~r~L~~hey~~~~ll~~~Gv~vp~g~vA~speEA~~~akklg~kdlVikAQ~lAgGRgKGtF~SglkgGV~iVf~p~ 96 (434)
T KOG2799|consen 17 FQAERSLGIHEYRSAALLRKYGINVPLGYVAKSPEEAFAIAKKLGSKDLVIKAQVLAGGRGKGTFDSGLKGGVKIVFSPQ 96 (434)
T ss_pred hhHhhhhhHHHHHHHHHHHHcCCCCCCCcccCCHHHHHHHHHHhCCcceEEEeeecccCcccCCcCcCcCCceEEEeChH
Confidence 444444432 55555 8999999999999999999999999877899999999999999999999999999999999
Q ss_pred cHHHHHHHHhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEEE
Q psy7785 80 DIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTI 159 (525)
Q Consensus 80 ea~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~ 159 (525)
|+++.+.+|+++++.++|+++.|..++.|+|.+......|+|++++.|+++.||+++.+.+||+.+|.++..+||.+.+.
T Consensus 97 Eak~va~qmiG~kLiTKQtG~~gk~c~~v~iC~Rk~~~~e~yFsil~dr~~k~pliIas~kgg~~ie~vae~~pdai~k~ 176 (434)
T KOG2799|consen 97 EAKAVASQMIGKKLITKQTGPAGKACSEVYICERKHTRAEYYFSILMDRHTKGPLIIASSKGGVNIEEVAEDTPDAIIKK 176 (434)
T ss_pred HHHHHHHHhhcceeeeeccCCCCCccceEEEeeecchhhHHHHHHHHhcccCCCEEEEeccCCccHHHHhhhCccchhcc
Confidence 99999999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcCCCc
Q psy7785 160 PIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDAT 239 (525)
Q Consensus 160 ~l~p~~~l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~~~~ 239 (525)
|++-..||++..|.++...|++ ++..+..+.+.+.+||.+|...|.+
T Consensus 177 pi~~~~Gls~~~a~~v~~~lgf---------------------------------s~~~~~~a~~~~~kly~vf~~~dat 223 (434)
T KOG2799|consen 177 PIDNNTGLSPEIACLVADKLGF---------------------------------SPDGIRKAAKAVPKLYKVFHKSDAT 223 (434)
T ss_pred cccccCCCCHHHHHHHHhhcCC---------------------------------CcccHHHHHHHHHHHHHHHhhccce
Confidence 9999999999999999888776 4557889999999999999999999
Q ss_pred eeeeeceeEecCC-cEEEeeeEEEecCCchhccccccccCCCCCCChHhhhhhccCCceeccCCcEEEEecchhHHHHHH
Q psy7785 240 QLEINPLVETDER-EVISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATM 318 (525)
Q Consensus 240 ~leiNPl~v~~~g-~~~alDa~i~ld~~a~frq~~i~~~~~~~~~~~~E~~a~~~~l~~~~~~~rIaIitnsGG~gvlaa 318 (525)
.+|||||..+.++ .+++-|+|+.+|+|+.|||..++.++|+++++++|..+.++.++|+.+.|+|+++.|+.|.+|.++
T Consensus 224 ~veinpl~e~t~d~~v~c~dak~~fd~na~fRq~~iF~~rd~~QEd~re~~aak~~ln~igldG~igC~vngaglamaTm 303 (434)
T KOG2799|consen 224 QVEINPLAEITSDHKVTCMDAKLNFDDNAAFRQKKIFLLRDLSQEDPREVTAAKVDLNYIGLDGNIGCLVNGAGLAMATM 303 (434)
T ss_pred eEEecchhhcccCceeeechhhhcccccHHHHhhhhhhccchhhcCchhhhHHHhccceeccCCccceeeccchhhhhhe
Confidence 9999999988766 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCcc
Q psy7785 319 DIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTN 398 (525)
Q Consensus 319 D~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~ 398 (525)
|.+..+|++|+|++|++|.++.+...++++.+.+||+++++++|+++|+..|+.+|.+++.+.+++..+.||++++.|++
T Consensus 304 diiklhgg~panfldVGg~Atve~v~eaf~litsd~kv~ailvnifGgi~rCDvia~Giv~aar~l~~~ipiv~rlqgt~ 383 (434)
T KOG2799|consen 304 DIIKLHGGTPANFLDVGGGATVEQVREAFSLITSDKKVMAILVNIFGGIMRCDVIAFGIVLAARELELNIPIVVRLQGTR 383 (434)
T ss_pred eeeeecCCCCcceeeeCCCCcHHHHHHHHHHHhcChhHHHHHHHHhcCeeeccceecchhhhhhhhhcCCCEEEEecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999998
Q ss_pred hHHHHHHHhhCCCCccccCCHHHHHHHHHHh
Q psy7785 399 VQEGKRILDESKLPLIFASDLDEAASLVNAC 429 (525)
Q Consensus 399 ~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l 429 (525)
.+++..++...|+-++.+++.++|...+...
T Consensus 384 v~~ak~~i~~sgmri~~~deldeaa~~~v~~ 414 (434)
T KOG2799|consen 384 VEAAKPIINTSGMRIRSFDELDEAAKKAVGG 414 (434)
T ss_pred hhhhhhhHhhcCceEEechhhhHHhhhhccc
Confidence 8999999999999998889999988876443
No 9
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=100.00 E-value=2.1e-41 Score=325.07 Aligned_cols=198 Identities=41% Similarity=0.578 Sum_probs=175.9
Q ss_pred ccHHhhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHH
Q psy7785 11 NFSYLVKP---VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEK 87 (525)
Q Consensus 11 ~~e~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~ 87 (525)
+.||++|+ +||||+|++.++++++|+.++++++|.+++|+|+|+++||||| .|||+++.|++|+++.+++
T Consensus 2 l~EyqaK~ll~~~gi~vp~g~~a~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK-------~GgVk~~~s~~ea~~~a~~ 74 (202)
T PF08442_consen 2 LHEYQAKELLRKYGIPVPRGVVATSPEEAREAAKELGGKPLVVKAQVLAGGRGK-------AGGVKIAKSPEEAKEAAKE 74 (202)
T ss_dssp E-HHHHHHHHHCTT----SEEEESSHHHHHHHHHHHTTSSEEEEE-SSSSTTTT-------TTCEEEESSHHHHHHHHHT
T ss_pred chHHHHHHHHHHcCCCCCCeeecCCHHHHHHHHHHhCCCcEEEEEeEeecCccc-------CCceeecCCHHHHHHHHHH
Confidence 56899999 8999999999999999999999999976789999999999999 7999999999999999999
Q ss_pred HhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEEEecCCCCCC
Q psy7785 88 MIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGI 167 (525)
Q Consensus 88 l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~~l~p~~~l 167 (525)
|+++.+.++|+++.|..+++|||||++++.+|+|++++.||.+++|+|++|..||++||.++.++|+.+.+++++|..|+
T Consensus 75 mlg~~l~T~Qtg~~G~~v~~vlvee~v~~~~E~Ylsi~~DR~~~~p~ii~S~~GGvdIEeva~~~P~~i~~~~id~~~g~ 154 (202)
T PF08442_consen 75 MLGKTLKTKQTGPKGEKVNKVLVEEFVDIKREYYLSITLDRESRGPVIIASKEGGVDIEEVAAENPEKIIKFPIDPTEGL 154 (202)
T ss_dssp TTTSEEE-TTSTTTEEEE--EEEEE---CCEEEEEEEEEETTTTEEEEEEESSTSSTHHHHHHHSGGGEEEEEEBTTTB-
T ss_pred HhCCceEeeecCCCCCEeeEEEEEecCccCceEEEEEEeccCCCceEEEEeccCCccHHHHhhhChhhEEEEecCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcCCCceeeeecee
Q psy7785 168 TESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLV 247 (525)
Q Consensus 168 ~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~~~~~leiNPl~ 247 (525)
+++.+++++..++++ +...+.+.+++.+||++|.++|++++|||||+
T Consensus 155 ~~~~~~~i~~~lg~~---------------------------------~~~~~~~~~~l~~Ly~~F~~~DatllEINPL~ 201 (202)
T PF08442_consen 155 TPYQAREIAKKLGLP---------------------------------GKLAEQLADILKKLYRLFREYDATLLEINPLV 201 (202)
T ss_dssp -HHHHHHHHHHTTS----------------------------------CHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CHHHHHHHHHhcccc---------------------------------HHHHHHHHHHHHHHHHHHHHcCCcEEEecCCC
Confidence 999999999998874 33688999999999999999999999999997
Q ss_pred E
Q psy7785 248 E 248 (525)
Q Consensus 248 v 248 (525)
+
T Consensus 202 ~ 202 (202)
T PF08442_consen 202 E 202 (202)
T ss_dssp E
T ss_pred C
Confidence 5
No 10
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=100.00 E-value=4.2e-41 Score=327.71 Aligned_cols=213 Identities=18% Similarity=0.226 Sum_probs=152.0
Q ss_pred hhhhcc-ccHHhhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeC-Ccc
Q psy7785 5 FNQQIA-NFSYLVKP---VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTN-NVQ 79 (525)
Q Consensus 5 ~~~~~~-~~e~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~-~~e 79 (525)
.+.+++ ++|+++|+ .||||+|++.+++|++|+.++++++|| |||+|+.++.- .|| |+ +|||++++ |++
T Consensus 3 ~~~g~~~L~e~e~~~lL~~yGI~~~~~~~~~~~~ea~~~a~~ig~-PvvlKi~sp~i-~HK----sd-~GgV~L~l~~~~ 75 (222)
T PF13549_consen 3 LAEGRGWLTEAEAKELLAAYGIPVPPTRLVTSAEEAVAAAEEIGF-PVVLKIVSPDI-AHK----SD-VGGVRLNLNSPE 75 (222)
T ss_dssp HHTT--EE-HHHHHHHHHTTT------EEESSHHHHHHHHHHH-S-SEEEEEE-TT----H----HH-HT-EEEEE-SHH
T ss_pred ccCCCCccCHHHHHHHHHHcCcCCCCeeEeCCHHHHHHHHHHhCC-CEEEEEecCCC-CcC----CC-CCcEEECCCCHH
Confidence 344444 45699999 899999999999999999999999997 99999976521 134 44 99999997 799
Q ss_pred cHHHHHHHHhccccccccCCCCCcccCeEEEEeeeC-CceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEE
Q psy7785 80 DIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVN-ITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKT 158 (525)
Q Consensus 80 ea~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~~~-~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~ 158 (525)
++++++++|..+.. .+.| +..+.+|+||+|++ .+.|+++|+++||.| ||+|+|| .||+++|.++| . .
T Consensus 76 ~v~~a~~~l~~~~~---~~~p-~~~~~gvlVq~m~~~~g~El~vG~~~Dp~F-GPvv~~G-~GG~~vE~~~D----~--~ 143 (222)
T PF13549_consen 76 EVREAFERLRERVA---AHHP-GARIDGVLVQEMAPSGGRELIVGVRRDPQF-GPVVMFG-LGGIFVELLKD----V--A 143 (222)
T ss_dssp HHHHHHHHHHHHHH---HH-T-T----EEEEEE------EEEEEEEEEETTT-EEEEEEE-E-STTHHHH---------E
T ss_pred HHHHHHHHHHHHHH---HhCC-CCccceEEEEEcccCCcEEEEEEEEECCCC-CCEEEEc-CCCceeeeecc----e--E
Confidence 99999999998643 2223 44589999999998 899999999999999 9999999 99999999996 3 4
Q ss_pred EecCCCCCCCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcC-C
Q psy7785 159 IPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSV-D 237 (525)
Q Consensus 159 ~~l~p~~~l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~-~ 237 (525)
+.++| +|..+|++|+++++. +++|.||||. |+.|+++|.++++++|+++.++ +
T Consensus 144 ~~l~P---l~~~~a~~mi~~l~~------------~~lL~G~RG~-----------p~~d~~al~~~l~~ls~l~~~~p~ 197 (222)
T PF13549_consen 144 FRLPP---LSEADAREMIRELRA------------YPLLRGYRGR-----------PPADLDALADLLVRLSQLAADLPE 197 (222)
T ss_dssp EEESS-----HHHHHHHHHTSTT------------HHHHH------------------B-HHHHHHHHHHHHHHHHHTTT
T ss_pred EeeCC---CCHHHHHHHHHHHHh------------HHhhcccCCC-----------CCcCHHHHHHHHHHHHHHHHhCCC
Confidence 66788 999999999998876 6899999997 8899999999999999999986 6
Q ss_pred CceeeeeceeEecCCcEEEeeeEEEe
Q psy7785 238 ATQLEINPLVETDEREVISVDAKINF 263 (525)
Q Consensus 238 ~~~leiNPl~v~~~g~~~alDa~i~l 263 (525)
+.|+|||||+++++| ++|+|++|++
T Consensus 198 I~eldiNPl~v~~~g-~~avDa~i~l 222 (222)
T PF13549_consen 198 IAELDINPLIVTPDG-AVAVDARIRL 222 (222)
T ss_dssp EEEEEEEEEEE-BS--EEE--EEEEE
T ss_pred EEEEEeeceEEcCCc-eEEEEEEEEC
Confidence 999999999999998 9999999986
No 11
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=99.92 E-value=6.6e-26 Score=247.95 Aligned_cols=422 Identities=17% Similarity=0.160 Sum_probs=278.6
Q ss_pred cccHHhhhh---hCC----CCCCCcc------ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeC
Q psy7785 10 ANFSYLVKP---VST----VHSTDKV------CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTN 76 (525)
Q Consensus 10 ~~~e~~~k~---~~G----Ipvp~~~------~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~ 76 (525)
...+++++. .|| +||++.. .+-+..........+++ ++|.|..++... ++ ++ .+||+.+.
T Consensus 23 ~~vg~~i~~nL~~~g~g~i~PVnp~~~~v~G~~ay~s~~~lp~~~dlav-~~v~~~~~~~i~-~~----~~-~kGv~~~i 95 (598)
T COG1042 23 GKLGYEILRNLLEYGQGKIYPVNPKYDEVLGVKAYTSVADLPDAPDLAV-IVVPAKVVPEIV-HE----LG-EKGVKGAI 95 (598)
T ss_pred chhHHHHHHHHHhcCCCceEecCccccccccccccchHhhCCCCCCeeE-EEechhhhHHHH-HH----hh-ccCCceEE
Confidence 456788888 899 9998777 45555555556667786 888886443211 11 22 56776663
Q ss_pred -CcccHHHHHHHHhccccccccCCCCCcccCeEEEEeeeCCceeEEEE--EEEcCCCCccEEEecCCCCcccccccccCC
Q psy7785 77 -NVQDIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFC--IVQDRLHNGPVVIISPSGGTDIENVAAKTP 153 (525)
Q Consensus 77 -~~eea~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vg--v~~D~~f~gpvi~~g~~GGv~iE~~~~~~~ 153 (525)
.....+++.+++...... .. +........++.++..+..+..+| ++.+|.| ++. ++ -|+..++...+
T Consensus 96 ~is~gf~e~~~~~~~~e~~--~~-~~a~~~~~rligPn~~G~~~~~~glna~f~p~~-~~~--~~-g~~afvsqsga--- 165 (598)
T COG1042 96 VISAGFREAGEEGMELEKE--LV-EAARKYGMRIIGPNCLGLINPIIGLNATFDPVF-GLG--RG-GGGAFVSQSGA--- 165 (598)
T ss_pred EechhhhHHhhhHhHHHHH--HH-HHHHhcCceEeccccccccccccccccccCccc-ccc--cC-CCeEEEEechH---
Confidence 333344444432211100 00 001123568999999989999999 8888888 555 55 56778887764
Q ss_pred CeEEEEecCCCCCCCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHH
Q psy7785 154 HLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLF 233 (525)
Q Consensus 154 ~~~~~~~l~p~~~l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~ 233 (525)
. .+.+.+ .+..+ .++++-. +.....+. ++....+...+.|...+...++
T Consensus 166 -v--~~~il~---~~~~~------~~g~s~~--------vs~gn~ad-----------~~~~d~~~~~~~D~~tk~i~Ly 214 (598)
T COG1042 166 -V--SFAILD---WANED------GMGFSIK--------VSLGNAAD-----------RDESDLLEYLADDPRTKAIGLY 214 (598)
T ss_pred -H--HHhccc---hhhhc------CCceeEE--------Eeecchhh-----------cCchHhHHHHhhCccceEEEEE
Confidence 2 222333 11111 2222100 00000111 1123333444445555555555
Q ss_pred hcC-CCceeeeeceeEecCC-cEEEeeeEEEec------------------CCchhccccccccCCCCCCChHhhhhhcc
Q psy7785 234 LSV-DATQLEINPLVETDER-EVISVDAKINFD------------------DNAEFRQKNIFSQNEVSESDPREVDASKY 293 (525)
Q Consensus 234 ~~~-~~~~leiNPl~v~~~g-~~~alDa~i~ld------------------~~a~frq~~i~~~~~~~~~~~~E~~a~~~ 293 (525)
.+. +..+.++||+.....+ .++++|+..+.. -++.|||.|++++ .+..|+.+...
T Consensus 215 ~E~~~~~r~fl~~a~~~~~~kpii~lk~gr~~~~akAa~shTgslag~~~~y~Aa~~~agvir~-----~~~~elf~~~k 289 (598)
T COG1042 215 IEGVKDGRKFLNAARAAERKKPIIALKAGRSEAGAKAAASHTGSLAGSDEAYDAAFKQAGVIRV-----ESIEELFDAAK 289 (598)
T ss_pred eccchhHHHHHHHHHHHhcCCCEEEEeccCCHHHHHHHhcccccccccchhhHHHHHhhCceec-----cChHHHHHHHH
Confidence 553 4556778888765543 388888776632 1467999999998 55688877665
Q ss_pred CCcee-cc-CCcEEEEecchhHHHHHHHHHHHcCC---------------------CCCCeeeecCCCCHHHHHHHHHHH
Q psy7785 294 NLNYV-GM-DGNIGCLVNGAGLAMATMDIIKLHGG---------------------EPANFLDVGGGVNEESIIQAFRII 350 (525)
Q Consensus 294 ~l~~~-~~-~~rIaIitnsGG~gvlaaD~~~~~Gl---------------------~~aNPlDl~g~a~~~~~~~al~~l 350 (525)
.+... ++ +.|++++|||||.|++++|.|.+.|+ +..||+|++|++..+.|.++++.+
T Consensus 290 ~l~~~~~~~g~~~~ivtn~Gg~gvla~D~l~~~g~~l~~~~~~~~~~l~~~Lp~~~~~~NPvD~~~~a~~e~y~~~~~~~ 369 (598)
T COG1042 290 ALSHQPPPAGDRVAIITNGGGPGVLAADALEERGLKLAELSEETIEKLRSRLPPHASVKNPVDLTGDADAERYKKTLEIL 369 (598)
T ss_pred HhccCCCCCCcceeEEecCCCccccchhHHHHcCCCcCCCCHHHHHHHHhhcCccccccCCeeeecCCcHHHHHHHHHHH
Confidence 55533 33 56999999999999999999999997 268999999999999999999999
Q ss_pred hcCCCccEEEEEec-ccccChHHHHHHHHHHHHhcCCCCcEEEEeCCc-chHHHHHHHhhCCCCccccCCHHHHHHHHHH
Q psy7785 351 SSDSNVKCILVNVF-GGIVNCATIAKGLVNACKSFKLSIPLVVRLEGT-NVQEGKRILDESKLPLIFASDLDEAASLVNA 428 (525)
Q Consensus 351 l~dp~vd~vlv~~~-~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~-~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~ 428 (525)
++|+++|++++... +........++.++.+ ...+.+||++++++|. ....+.+.|++.|||+| .+|++|++++..
T Consensus 370 ~~~~~~~~llvi~~~~~~~~~~~~a~~~~~~-~~~~~~k~~v~~~~gg~~~~~~~~~l~~~gip~~--~~pe~a~~a~~~ 446 (598)
T COG1042 370 LRDENVDALLVIVLPPASADPEETAEAIIRA-TAKKRGKPVVVSSMGGESSEKARRLLEEAGIPTY--PTPERAVKALSA 446 (598)
T ss_pred HhccCCceEEEEecCCCCCCchhhhHHHHHh-hhhhCCCceEEEecCCcchHHHHHHhhhcCCCCc--cCchHHHHHHHH
Confidence 99999999998654 3344466778888875 2223679988765554 67777889999999999 999999999987
Q ss_pred hhccc------CCCCeEE--EeCCCCHHHHHHHHHHCCCCe--EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHH
Q psy7785 429 CKSFK------LSIPLVV--RLEGTNVQEGKRILDESKLPL--IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQE 497 (525)
Q Consensus 429 l~~~~------~~~P~~~--~l~g~~e~eak~LL~ayGIpv--~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~ 497 (525)
++++. ...+... .....++.|++++|.+|||++ .++++.+||.. +++.+ | |+.++++..
T Consensus 447 l~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~gi~~~~~~~~~~~ea~~---~a~~~--~-----Kl~s~~i~h 515 (598)
T COG1042 447 LARYRRWLKKLRETPVFEGGGGTTLDEPEAKELLEAYGIPVPATIASTLDEAVH---IAESI--G-----KLRSPDIDH 515 (598)
T ss_pred HHHHHHHHHhhccCcccccCCccccCchhhhhHHHHhcCcccccccCCHHHHHH---HHHHh--h-----hccCCccch
Confidence 76532 1122210 111157889999999999999 88889999988 56563 5 888887654
No 12
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=99.83 E-value=5.7e-20 Score=197.69 Aligned_cols=158 Identities=23% Similarity=0.334 Sum_probs=132.9
Q ss_pred chhccccccccCCCCCCChHhhhhhccCCceecc--CCcEEEEecchhHHHHHHHHHHHcCCC-----------------
Q psy7785 267 AEFRQKNIFSQNEVSESDPREVDASKYNLNYVGM--DGNIGCLVNGAGLAMATMDIIKLHGGE----------------- 327 (525)
Q Consensus 267 a~frq~~i~~~~~~~~~~~~E~~a~~~~l~~~~~--~~rIaIitnsGG~gvlaaD~~~~~Gl~----------------- 327 (525)
+.|||.|+++++ +.+|+......|...++ ++||+|||||||.|++++|.++++|++
T Consensus 264 a~~~~~Gv~~~~-----~~~el~~~~~~l~~~~~~~g~rvaivs~sGG~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~~lp 338 (447)
T TIGR02717 264 AAFKQAGVIRAD-----SIEELFDLARLLSNQPLPKGNRVAIITNAGGPGVIATDACEENGLELAELSEATKNKLRNILP 338 (447)
T ss_pred HHHHHCCeEEeC-----CHHHHHHHHHHHhcCCCCCCCeEEEEECCchHHHHHHHHHHHcCCCcCCCCHHHHHHHHHhCc
Confidence 689999999994 44788877666665555 579999999999999999999999984
Q ss_pred ----CCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEec-ccccChHHHHHHHHHHHHhcCCCCcEEEEeCC-cchHH
Q psy7785 328 ----PANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVF-GGIVNCATIAKGLVNACKSFKLSIPLVVRLEG-TNVQE 401 (525)
Q Consensus 328 ----~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~-~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g-~~~~~ 401 (525)
+.||+|+++..+++.|.++++++++||++|++++++. ++...++.+++.++++.++. .+||++++|.| ...++
T Consensus 339 ~~~~~~NPlDl~~~~~~~~~~~al~~l~~dp~vd~Vlv~~~~~~~~~~~~~a~~l~~~~~~~-~~KPvv~~~~gg~~~~~ 417 (447)
T TIGR02717 339 PEASIKNPVDVLGDATPERYAKALKTVAEDENVDGVVVVLTPTAMTDPEEVAKGIIEGAKKS-NEKPVVAGFMGGKSVDP 417 (447)
T ss_pred cccccCCCEecCCCCCHHHHHHHHHHHHcCCCCCEEEEEccCCccCCHHHHHHHHHHHHHhc-CCCcEEEEecCCccHHH
Confidence 4599999988999999999999999999999998654 33456678899999887762 28999988876 45566
Q ss_pred HHHHHhhCCCCccccCCHHHHHHHHHHhhcc
Q psy7785 402 GKRILDESKLPLIFASDLDEAASLVNACKSF 432 (525)
Q Consensus 402 ~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~ 432 (525)
.++.|+++|||+| ++|++|++++.++.++
T Consensus 418 ~~~~L~~~Gip~f--~~p~~A~~al~~~~~~ 446 (447)
T TIGR02717 418 AKRILEENGIPNY--TFPERAVKALSALYRY 446 (447)
T ss_pred HHHHHHhCCCCcc--CCHHHHHHHHHHHHhh
Confidence 7788999999999 9999999999987653
No 13
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=99.40 E-value=2e-12 Score=119.00 Aligned_cols=119 Identities=39% Similarity=0.570 Sum_probs=106.7
Q ss_pred EecchhHHHHHHHHHHHc--------------CCCCCCeeeecCCCC----------HHHHHHHHHHHhcCCCccEEEEE
Q psy7785 307 LVNGAGLAMATMDIIKLH--------------GGEPANFLDVGGGVN----------EESIIQAFRIISSDSNVKCILVN 362 (525)
Q Consensus 307 itnsGG~gvlaaD~~~~~--------------Gl~~aNPlDl~g~a~----------~~~~~~al~~ll~dp~vd~vlv~ 362 (525)
+.+|||+++-++|.+... |..++|++|++|+.. ++...++++.+++||++.+|+++
T Consensus 1 l~~GgtL~~Ea~~~i~~~~~~~~sn~~~~~~~g~~~~~~lDlGgd~~t~GrphPmid~~~~~~~l~~~~~Dp~v~vIlvd 80 (153)
T PF00549_consen 1 LYNGGTLAMEAMDLISDALGDVYSNFKLANPLGGGPANFLDLGGDAFTQGRPHPMIDPSTRNEALEIEAADPEVKVILVD 80 (153)
T ss_dssp EESSHHHHHHHHHHHHHTTT------GCCEEETCTEEEEEECTSSSSHTTS--TTT-SSHHHHHHHHHHTSTTESEEEEE
T ss_pred CcCcHHHHHHHHHHHHHhhccccccccccccCCCCceeEEEeCCCcccccCcCCCcCHHHHHHHHHHHhcCCCccEEEEE
Confidence 589999999999999999 999999999999999 67899999999999999999999
Q ss_pred ecccccChHHHHHHHHHHHHhcC---CCCcEEEEeCCcchH-----HHHHHHhhCCCCccccCCHHHHHHHHH
Q psy7785 363 VFGGIVNCATIAKGLVNACKSFK---LSIPLVVRLEGTNVQ-----EGKRILDESKLPLIFASDLDEAASLVN 427 (525)
Q Consensus 363 ~~~~~~~~~~ia~~i~~a~~~~~---~~kPivv~~~g~~~~-----~~~~~L~~~Gvpvf~~~s~~~Av~Al~ 427 (525)
++.|+..+++.|.+++.+.++.+ .++|+|++..|++.+ +..+.|++.|++++ .+-.+|++...
T Consensus 81 ~~~G~g~~~~~A~~l~~a~~~~~~~~~~~pvVa~v~GT~~dpq~~~~~~~~L~~~G~~v~--~s~~~A~~~A~ 151 (153)
T PF00549_consen 81 IVGGIGSCEDPAAGLIPAIKEAKAEGRKKPVVARVCGTNADPQGRMGQAGALEDAGVIVA--ESNAQAARAAG 151 (153)
T ss_dssp EESSSSSHHHHHHHHHHHHSHCTHTTT-SEEEEEEESTTCHTTSCHHHHHHHHCTTCSCH--HHHHHHHHHHT
T ss_pred eccccCchHHHHHHHHHHHHhccccCCCCcEEEEeeeecCCCCCcHHHHHHHHhCCCccc--ccHHHHHHHcC
Confidence 99999999999999999987754 679999999997666 77889999999999 88777776653
No 14
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=99.08 E-value=5.5e-10 Score=106.63 Aligned_cols=96 Identities=21% Similarity=0.285 Sum_probs=77.9
Q ss_pred hhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCcE-EEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhc
Q psy7785 15 LVKP---VSTVHSTDKVCLEDARTATNILKDLNFKEY-VIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIG 90 (525)
Q Consensus 15 ~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~Pv-VlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~ 90 (525)
.+|+ +|||||+++..++|.++|.+++++.++ |+ |||++.+++| | ||.+..|.+++.+++++++.
T Consensus 5 faK~fm~~~~IPTa~~~~f~~~~~A~~~l~~~~~-p~~ViKadGla~G--K---------GV~i~~~~~eA~~~l~~~~~ 72 (194)
T PF01071_consen 5 FAKEFMKRYGIPTAKYKVFTDYEEALEYLEEQGY-PYVVIKADGLAAG--K---------GVVIADDREEALEALREIFV 72 (194)
T ss_dssp HHHHHHHHTT-SB--EEEESSHHHHHHHHHHHSS-SEEEEEESSSCTT--T---------SEEEESSHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCeeEECCHHHHHHHHHhcCC-CceEEccCCCCCC--C---------EEEEeCCHHHHHHHHHHhcc
Confidence 4555 899999999999999999999999997 78 9999999875 5 89999999999999999997
Q ss_pred cccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCC
Q psy7785 91 HKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLH 130 (525)
Q Consensus 91 ~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f 130 (525)
... -|...++|+|||++. |.|+.+.+..|...
T Consensus 73 ~~~-------fg~~~~~vvIEE~l~-G~E~S~~a~~dG~~ 104 (194)
T PF01071_consen 73 DRK-------FGDAGSKVVIEEFLE-GEEVSLFALTDGKN 104 (194)
T ss_dssp SST-------TCCCGSSEEEEE----SEEEEEEEEEESSE
T ss_pred ccc-------cCCCCCcEEEEeccC-CeEEEEEEEEcCCe
Confidence 422 244457899999997 89999999999875
No 15
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=99.08 E-value=4.4e-11 Score=131.82 Aligned_cols=122 Identities=12% Similarity=0.182 Sum_probs=101.3
Q ss_pred ccccHHhhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHH
Q psy7785 9 IANFSYLVKP---VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPIL 85 (525)
Q Consensus 9 ~~~~e~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~ 85 (525)
....++++++ +|||++|.+ ++.+++|+..+++.++ |.....-. || | ++|||.++.+..++++++
T Consensus 469 ~~~~~~e~~~~l~~~gi~~~~~-~~~~~~ea~~~a~~~~------Kl~s~~i~-hk----s-ev~gv~l~~~~~~v~~a~ 535 (598)
T COG1042 469 TTLDEPEAKELLEAYGIPVPAT-IASTLDEAVHIAESIG------KLRSPDID-HK----S-EVGGVMLNRTADAVEKAA 535 (598)
T ss_pred cccCchhhhhHHHHhcCccccc-ccCCHHHHHHHHHHhh------hccCCccc-hh----h-hccceeecCcHHHHHHHH
Confidence 4556788888 899999999 9999999999999986 54322110 34 4 499999997789999999
Q ss_pred HHHhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEEEecCC
Q psy7785 86 EKMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDV 163 (525)
Q Consensus 86 ~~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~~l~p 163 (525)
..++.+ | ..+.+++||+|.. .|+++++.+||.| ||+++|| .||+.+|.++| . .+.++|
T Consensus 536 ~~~~~~--------p--a~i~g~lvq~m~~--~E~~vgv~~dp~f-gp~i~~G-~Gg~~ve~l~d----~--~~~~~P 593 (598)
T COG1042 536 DDILAR--------P--ARIAGVLVQTMAK--LELIVGVKNDPTF-GPLILFG-EGGIEVEVLKD----V--VVALPP 593 (598)
T ss_pred HhHhcc--------c--chhhhhhhHhhhh--ccceeeccCCCcc-hhHHHhc-CCceEEEeecc----e--eeccCC
Confidence 999765 2 3489999999998 9999999999999 9999999 99999999985 3 455666
No 16
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=98.92 E-value=3.8e-09 Score=110.04 Aligned_cols=97 Identities=16% Similarity=0.210 Sum_probs=84.2
Q ss_pred Hhhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhc
Q psy7785 14 YLVKP---VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIG 90 (525)
Q Consensus 14 ~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~ 90 (525)
..+|+ +||||++.+..++++++|.++++++|. |+|||++.+++| | ||.+..+.+||.+++++|+.
T Consensus 105 ~faK~fm~k~~IPta~y~~f~~~e~a~ayi~~~g~-piVVKadGLaaG--K---------GV~V~~~~eeA~~a~~~~l~ 172 (428)
T COG0151 105 AFAKDFMKKYGIPTAEYEVFTDPEEAKAYIDEKGA-PIVVKADGLAAG--K---------GVIVAMTLEEAEAAVDEMLE 172 (428)
T ss_pred HHHHHHHHHcCCCcccccccCCHHHHHHHHHHcCC-CEEEecccccCC--C---------CeEEcCCHHHHHHHHHHHHh
Confidence 44555 899999999999999999999999996 999999999875 6 89999999999999999987
Q ss_pred cccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCC
Q psy7785 91 HKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLH 130 (525)
Q Consensus 91 ~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f 130 (525)
... .|.....|+|||+++ |.|+++-+..|...
T Consensus 173 ~~~-------fg~~g~~VVIEEfL~-GeE~S~~a~~DG~~ 204 (428)
T COG0151 173 GNA-------FGSAGARVVIEEFLD-GEEFSLQAFVDGKT 204 (428)
T ss_pred hcc-------ccCCCCcEEEEeccc-ceEEEEEEEEcCCe
Confidence 643 132246799999998 89999999999876
No 17
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=98.63 E-value=1.6e-07 Score=100.93 Aligned_cols=91 Identities=19% Similarity=0.225 Sum_probs=76.1
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||+|++..+++.+|+.+++++++| |+|||+....+| | ||.+..+.+|+.+++++++....
T Consensus 118 ~~gIpt~~~~~~~~~~ea~~~~~~~~~-PvVVKp~~~~~g--k---------GV~vv~~~eel~~a~~~~~~~~~----- 180 (426)
T PRK13789 118 EAKIPTASYKTFTEYSSSLSYLESEML-PIVIKADGLAAG--K---------GVTVATEKKMAKRALKEIFKDKK----- 180 (426)
T ss_pred HcCCCCCCeEeeCCHHHHHHHHHhcCC-CEEEEeCCCCCC--C---------cEEEECCHHHHHHHHHHHHhhcc-----
Confidence 899999999999999999999999997 999999877553 4 79999999999999999874321
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
.|.....++|||+++ +.|+.+.+..|..
T Consensus 181 --~g~~~~~vlIEEfl~-G~E~Sv~~~~dg~ 208 (426)
T PRK13789 181 --FGQSGNQVVIEEFME-GQEASIFAISDGD 208 (426)
T ss_pred --ccCCCCeEEEEECcC-CeEEEEEEEECCC
Confidence 122235799999998 4899999998864
No 18
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=98.62 E-value=1.2e-06 Score=82.66 Aligned_cols=115 Identities=16% Similarity=0.230 Sum_probs=81.4
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
..|||||++..+++.+|...+++++|| |+|+|.-.. |-.|| |..+..+.+++.++++.+-
T Consensus 3 ~~gip~~~~~~i~~~~~l~~a~~~iG~-P~vlK~~~~-GYDGk---------Gq~~i~~~~dl~~a~~~~~--------- 62 (172)
T PF02222_consen 3 ELGIPTAPYATIDSLEDLEEAAESIGF-PAVLKTRRG-GYDGK---------GQFVIRSEEDLEKAWQELG--------- 62 (172)
T ss_dssp HTT--B-EEEEESSHHHHHHHHHHHTS-SEEEEESSS-SCTTT---------TEEEESSGGGHHHHHHHTT---------
T ss_pred ccCCCCCCeEEECCHHHHHHHHHHcCC-CEEEEccCc-CcCCC---------ccEEECCHHHHHHHHHhcC---------
Confidence 479999999999999999999999997 999997322 22345 6777788999998888871
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEEEecCCCCCCCHH
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGITES 170 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~~l~p~~~l~~~ 170 (525)
-..+++|++++..+|+.+-+.||.. |-+.++-. +|.... +.++...+.|.. ++..
T Consensus 63 ------~~~~ilE~~v~f~~EiSvivaR~~~--G~~~~yp~-----~en~~~---~~il~~s~~Pa~-i~~~ 117 (172)
T PF02222_consen 63 ------GGPCILEEFVPFDREISVIVARDQD--GEIRFYPP-----VENVHR---DGILHESIAPAR-ISDE 117 (172)
T ss_dssp ------TSCEEEEE---ESEEEEEEEEEETT--SEEEEEEE-----EEEEEE---TTEEEEEEESCS-S-HH
T ss_pred ------CCcEEEEeccCCcEEEEEEEEEcCC--CCEEEEcC-----ceEEEE---CCEEEEEECCCC-CCHH
Confidence 1358999999999999999999976 56677663 565543 455566666632 4543
No 19
>PLN02257 phosphoribosylamine--glycine ligase
Probab=98.57 E-value=2.8e-07 Score=99.32 Aligned_cols=91 Identities=20% Similarity=0.239 Sum_probs=75.1
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||||++..+++.+++.++++++|| |+|||+....+| | ||.+..+.+|+.+++++++....
T Consensus 112 ~~GIptp~~~~~~~~~e~~~~~~~~g~-PvVVKp~~~~~G--k---------GV~iv~~~~el~~a~~~~~~~~~----- 174 (434)
T PLN02257 112 KYKIPTAKYETFTDPAAAKKYIKEQGA-PIVVKADGLAAG--K---------GVVVAMTLEEAYEAVDSMLVKGA----- 174 (434)
T ss_pred HcCCCCCCeEEeCCHHHHHHHHHHcCC-CEEEEcCCCCCC--C---------CEEEECCHHHHHHHHHHHHhhhh-----
Confidence 899999999999999999999999997 999999866543 4 89999999999999999865322
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
.|.....++|||+++ +.|+.+.+.+|..
T Consensus 175 --fg~~~~~vlIEefi~-G~E~Sv~~~~dG~ 202 (434)
T PLN02257 175 --FGSAGSEVVVEEFLD-GEEASFFALVDGE 202 (434)
T ss_pred --ccCCCCeEEEEECCC-CCEEEEEEEECCC
Confidence 122235799999998 4699998888864
No 20
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=98.55 E-value=3e-06 Score=86.68 Aligned_cols=86 Identities=15% Similarity=0.232 Sum_probs=70.4
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
.+|||+|++.++++.+++..+++.+|| |+|+|+....+| + ||.+..+.+++.++++++.. .
T Consensus 108 ~~gIp~p~~~~~~~~~~~~~~~~~~~~-P~ivKP~~g~~s--~---------Gv~~v~~~~el~~~~~~~~~--~----- 168 (304)
T PRK01372 108 AAGLPTPPWIVLTREEDLLAAIDKLGL-PLVVKPAREGSS--V---------GVSKVKEEDELQAALELAFK--Y----- 168 (304)
T ss_pred HCCCCCCCEEEEeCcchHHHHHhhcCC-CEEEeeCCCCCC--C---------CEEEeCCHHHHHHHHHHHHh--c-----
Confidence 799999999999999999999999997 999999765433 2 67777888888888777632 1
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcCCC
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDRLH 130 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f 130 (525)
...++||+|++ +.|+.+.+..|..+
T Consensus 169 ------~~~~lvEe~i~-G~E~~v~vi~~~~~ 193 (304)
T PRK01372 169 ------DDEVLVEKYIK-GRELTVAVLGGKAL 193 (304)
T ss_pred ------CCcEEEEcccC-CEEEEEEEECCCcc
Confidence 24699999998 79999999877554
No 21
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.53 E-value=1e-06 Score=104.81 Aligned_cols=132 Identities=14% Similarity=0.252 Sum_probs=93.5
Q ss_pred hhCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785 18 PVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ 97 (525)
Q Consensus 18 ~~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~ 97 (525)
+++|||+|++..+++.+|+.++++++|| |+|||+....+| + |+.+..+.+|+.+++++.++..
T Consensus 137 ~~~GIpvp~~~~v~s~ee~~~~~~~igy-PvVVKP~~g~gG--~---------Gv~iv~~~eEL~~a~~~~~~~s----- 199 (1068)
T PRK12815 137 KELGEPVPESEIVTSVEEALAFAEKIGF-PIIVRPAYTLGG--T---------GGGIAENLEELEQLFKQGLQAS----- 199 (1068)
T ss_pred HHcCcCCCCceeeCCHHHHHHHHHHcCC-CEEEEECcCCCC--C---------ceEEECCHHHHHHHHHHHHhcC-----
Confidence 3799999999999999999999999998 999999744443 3 5667889999999998876431
Q ss_pred CCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCcccccccc---cCCCeEEEEecCCCCCCCHH----
Q psy7785 98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAA---KTPHLVKTIPIDVHQGITES---- 170 (525)
Q Consensus 98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~---~~~~~~~~~~l~p~~~l~~~---- 170 (525)
....++||+++++.+|+.+.+.+|..- -++++.. +|.+.. ++.+. +.+.|.+.++..
T Consensus 200 ------~~~~vLVEe~I~G~~E~sv~v~rD~~g--~~~~~~~-----~e~~~p~gi~tG~s---~~v~Pa~~l~~~~~~~ 263 (1068)
T PRK12815 200 ------PIHQCLLEESIAGWKEIEYEVMRDRNG--NCITVCN-----MENIDPVGIHTGDS---IVVAPSQTLTDDEYQM 263 (1068)
T ss_pred ------CCCeEEEEEccCCCeEEEEEEEEcCCC--CEEEEEe-----ceecccccccCCce---EEEecCCCCCHHHHHH
Confidence 135799999999889999999999764 3444431 233321 12223 234554456654
Q ss_pred ---HHHHHHHHcCCC
Q psy7785 171 ---LAQDIADFLEFQ 182 (525)
Q Consensus 171 ---~a~~~~~~l~~~ 182 (525)
.+.++++.|+..
T Consensus 264 l~~~a~ki~~~Lg~~ 278 (1068)
T PRK12815 264 LRSASLKIISALGVV 278 (1068)
T ss_pred HHHHHHHHHHHcCCC
Confidence 355566666653
No 22
>KOG0237|consensus
Probab=98.50 E-value=3.6e-07 Score=97.71 Aligned_cols=102 Identities=20% Similarity=0.264 Sum_probs=86.6
Q ss_pred Hhhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhc
Q psy7785 14 YLVKP---VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIG 90 (525)
Q Consensus 14 ~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~ 90 (525)
..+|. +|||||.+|..++++++|..+.+..+++++|+|++.++.| | ||.+..+.+|+-+|+++|+.
T Consensus 110 ~fsK~fm~r~~IPTA~y~~ft~~e~a~sfi~~~~~~~~ViKAdGLAAG--K---------GViv~~~~~EA~eAv~sIl~ 178 (788)
T KOG0237|consen 110 NFSKDFMHRHNIPTAKYKTFTDPEEAKSFIQSATDKALVIKADGLAAG--K---------GVIVAKSKEEAFEAVDSILV 178 (788)
T ss_pred HHHHHHHHhcCCCcceeeeeCCHHHHHHHHHhCCCcceEEeecccccC--C---------ceEeeccHHHHHHHHHHHHh
Confidence 45566 8999999999999999999999999988999999999875 6 89999999999999999997
Q ss_pred cccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccE
Q psy7785 91 HKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPV 134 (525)
Q Consensus 91 ~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpv 134 (525)
... .|.....|+|||+++ +.|+++-...|...-.|+
T Consensus 179 ~~~-------fg~AG~tvViEE~LE-GeEvS~laftDG~s~~~m 214 (788)
T KOG0237|consen 179 KKV-------FGSAGKTVVIEELLE-GEEVSFLAFTDGYSVRPL 214 (788)
T ss_pred hhh-------hccccceEehhhhcC-cceEEEEEEecCcccccC
Confidence 654 345567899999998 788888888886553343
No 23
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=98.47 E-value=7.3e-07 Score=94.50 Aligned_cols=87 Identities=17% Similarity=0.220 Sum_probs=73.5
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||+|++..+++.+++.++++++|| |+|||+....+| | ||.+..|.+|+.++++++++...
T Consensus 77 ~~gIptp~~~~~~~~~ea~~~~~~~g~-PvVvKp~~~~~g--k---------GV~iv~~~~el~~a~~~~~~~~~----- 139 (379)
T PRK13790 77 KYNIPTADYKEVERKKDALTYIENCEL-PVVVKKDGLAAG--K---------GVIIADTIEAARSAIEIMYGDEE----- 139 (379)
T ss_pred HCCCCCCCEEEECCHHHHHHHHHhcCC-CEEEEeCCCCCC--C---------CEEEECCHHHHHHHHHHHHhcCC-----
Confidence 899999999999999999999999997 999999866543 4 78899999999999999864211
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
...++|||+++ +.|+.+.+..|..
T Consensus 140 ------~~~vlvEe~i~-G~E~sv~~~~~g~ 163 (379)
T PRK13790 140 ------EGTVVFETFLE-GEEFSLMTFVNGD 163 (379)
T ss_pred ------CCeEEEEEccc-CceEEEEEEeeCC
Confidence 13699999998 5899999998864
No 24
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=98.45 E-value=8.8e-07 Score=95.06 Aligned_cols=91 Identities=20% Similarity=0.233 Sum_probs=75.0
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||+|++..+++.+++.++++++|| |||+|+....+| + ||.+..|.+++.+++++++....
T Consensus 112 ~~gip~p~~~~~~~~~~~~~~~~~~~~-P~VvKP~~~~gs--~---------Gv~~v~~~~el~~~~~~~~~~~~----- 174 (420)
T PRK00885 112 RYGIPTAAYETFTDAEEALAYLDEKGA-PIVVKADGLAAG--K---------GVVVAMTLEEAKAAVDDMLAGNK----- 174 (420)
T ss_pred HcCCCCCCeEEeCCHHHHHHHHHHcCC-CEEEEeCCCCCC--C---------cEEEeCCHHHHHHHHHHHhhccc-----
Confidence 799999999999999999999999997 999999755443 3 79999999999999999875321
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
.+.....++|||+++ +.|+.+.+..|..
T Consensus 175 --~~~~~~~vlvEe~i~-G~E~sv~~~~~g~ 202 (420)
T PRK00885 175 --FGDAGARVVIEEFLD-GEEASFFAFVDGE 202 (420)
T ss_pred --ccCCCCeEEEEEccC-CcEEEEEEEECCC
Confidence 122235799999998 5999999998864
No 25
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=98.43 E-value=8.4e-06 Score=85.43 Aligned_cols=91 Identities=19% Similarity=0.245 Sum_probs=72.8
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeecc-ccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILA-GGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ 97 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~-~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~ 97 (525)
++|||+|++..+++.+++.++++++|| |+|+|+.... + |+ ||.+..+.+++.++++++..
T Consensus 108 ~~gip~p~~~~~~~~~~~~~~~~~~g~-P~vvKp~~~g~~--g~---------Gv~~v~~~~el~~a~~~~~~------- 168 (352)
T TIGR01161 108 KLGLPVPPFLVIKDEEELDAALQELGF-PVVLKARTGGYD--GR---------GQYRIRNEADLPQAAKELGD------- 168 (352)
T ss_pred HcCCCCCCccEeCCHHHHHHHHHHcCC-CEEEEeCCCCCC--CC---------CEEEECCHHHHHHHHHhcCC-------
Confidence 799999999999999999999999997 9999996431 2 23 78888899999888877521
Q ss_pred CCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
..++||||++.+.|+.+.+.+|.. |-+..+.
T Consensus 169 --------~~~lvEe~I~~~~E~sv~~~~~~~--G~~~~~~ 199 (352)
T TIGR01161 169 --------RECIVEEFVPFERELSVIVARSAD--GETAFYP 199 (352)
T ss_pred --------CcEEEEecCCCCeEEEEEEEEcCC--CCEEEEC
Confidence 258999999988999998887754 3344444
No 26
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=98.42 E-value=1.8e-06 Score=84.21 Aligned_cols=130 Identities=18% Similarity=0.254 Sum_probs=88.6
Q ss_pred hCCCCCCCcccc--CCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDKVCL--EDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~~~--~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
+.|||++++... ++.+|+.++++++|| ||++|+-.--| |+ |.++..+.+++.+++++........
T Consensus 11 ~~gvp~~pg~~~~~~~~eea~~~a~~iGy-PVliKas~ggG--G~---------gm~iv~~~~eL~~~~~~~~~~s~~~- 77 (211)
T PF02786_consen 11 KLGVPVPPGSTVPISSVEEALEFAEEIGY-PVLIKASAGGG--GR---------GMRIVHNEEELEEAFERAQRESPAA- 77 (211)
T ss_dssp HTT-BBSSBESSSBSSHHHHHHHHHHH-S-SEEEEETTSST--TT---------SEEEESSHHHHHHHHHHHHHHHHHH-
T ss_pred HCCCCcCCCCCCCCCCHHHHHHHHHhcCC-ceEEeeccccc--cc---------ccccccchhhhhhhhhhccccCccc-
Confidence 899999999998 999999999999998 99999964433 44 6788889999999988876543210
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCccccccc-ccCCCeEEEEecCCCCCCCHHHHHHH
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVA-AKTPHLVKTIPIDVHQGITESLAQDI 175 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~-~~~~~~~~~~~l~p~~~l~~~~a~~~ 175 (525)
.| ...++||+++.+.+|+-+-+.+|.. |-++.+| +. |... .++-| .+-+.|.+.|+...-++|
T Consensus 78 ----fg--~~~v~iek~i~~~reiEvqvi~D~~--gn~~~~~---~~--e~~~~~hs~d---si~~~P~~~L~~~~~~~l 141 (211)
T PF02786_consen 78 ----FG--DGPVLIEKFIEGAREIEVQVIRDGK--GNVVHLG---ER--ECSEQRHSQD---SIEEAPAQTLSDEERQKL 141 (211)
T ss_dssp ----HS--TS-EEEEE--SSEEEEEEEEEEETT--SEEEEEE---EE--EEEEEETTEE---EEEEES-SSS-HHHHHHH
T ss_pred ----cc--cceEEEeeehhhhhhhhhhhhhccc--cceeeee---ee--cccccccccc---ceeEeeccccchHHHHHH
Confidence 01 3679999999988999999999986 4455544 22 2222 23333 345566666888766555
Q ss_pred HH
Q psy7785 176 AD 177 (525)
Q Consensus 176 ~~ 177 (525)
.+
T Consensus 142 ~~ 143 (211)
T PF02786_consen 142 RE 143 (211)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 27
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=98.41 E-value=1.1e-05 Score=85.24 Aligned_cols=91 Identities=18% Similarity=0.196 Sum_probs=73.5
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeec-cccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQIL-AGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ 97 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~-~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~ 97 (525)
++|||+|++..+++.+++.++++++|| |+|+|+... .+ || ||.+..+.+++.+++..+.
T Consensus 110 ~~Gip~p~~~~v~s~~~l~~~~~~~g~-P~vlKp~~~g~~--g~---------Gv~~v~~~~el~~a~~~~~-------- 169 (372)
T PRK06019 110 KLGIPVAPFAVVDSAEDLEAALADLGL-PAVLKTRRGGYD--GK---------GQWVIRSAEDLEAAWALLG-------- 169 (372)
T ss_pred HCCCCCCCceEeCCHHHHHHHHHHcCC-cEEEEeCCCCcC--CC---------CeEEECCHHHHHHHHHhcC--------
Confidence 799999999999999999999999997 999999532 22 23 7888889999888877651
Q ss_pred CCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
...++||+|++.+.|+.+.+.+|.. |-++.+.
T Consensus 170 -------~~~~ivEe~I~~~~E~sv~~~~~~~--G~~~~~p 201 (372)
T PRK06019 170 -------SVPCILEEFVPFEREVSVIVARGRD--GEVVFYP 201 (372)
T ss_pred -------CCCEEEEecCCCCeEEEEEEEECCC--CCEEEeC
Confidence 1358999999988999999888864 4455555
No 28
>PRK05586 biotin carboxylase; Validated
Probab=98.37 E-value=1.6e-05 Score=86.08 Aligned_cols=99 Identities=18% Similarity=0.283 Sum_probs=75.4
Q ss_pred hCCCCCCCc--cccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDK--VCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~--~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
++|||+|++ ..+.+.+++.++++++|| |||||+..-.+ |+ ||.+..+.+|+++++++.......
T Consensus 125 ~~GIpvp~~~~~~~~~~~e~~~~~~~igy-PvvvKP~~ggg--g~---------Gv~~v~~~~el~~a~~~~~~~~~~-- 190 (447)
T PRK05586 125 KAGVPVVPGSEGEIENEEEALEIAKEIGY-PVMVKASAGGG--GR---------GIRIVRSEEELIKAFNTAKSEAKA-- 190 (447)
T ss_pred HCCCCCCCCcccccCCHHHHHHHHHHcCC-CEEEEECCCCC--CC---------eeEEECCHHHHHHHHHHHHHHHHH--
Confidence 799999997 467899999999999997 99999954323 33 788888999999888876542210
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
. .+ -..++||+++++.+|+.+.+.+|.. |.++.++
T Consensus 191 ~---~~--~~~vivEe~i~g~~ei~v~v~~d~~--G~~~~~~ 225 (447)
T PRK05586 191 A---FG--DDSMYIEKFIENPKHIEFQILGDNY--GNVVHLG 225 (447)
T ss_pred h---cC--CCeEEEEecCCCCeEEEEEEEECCC--CCEEEEe
Confidence 0 11 1469999999988999999999864 5666665
No 29
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=98.35 E-value=2e-06 Score=92.25 Aligned_cols=90 Identities=18% Similarity=0.249 Sum_probs=74.8
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCc-EEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKE-YVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ 97 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~P-vVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~ 97 (525)
++|||+|++..+++.+++.++++++|| | +|+|+....+| + ||.+..+.+++.+++++++...+
T Consensus 114 ~~gIp~p~~~~~~~~~~~~~~~~~~g~-P~~VvKp~~~~gg--~---------Gv~~v~~~~el~~~~~~~~~~~~---- 177 (423)
T TIGR00877 114 RYGIPTAEYEVFTDPEEALSYIQEKGA-PAIVVKADGLAAG--K---------GVIVAKTNEEAIKAVEEILEQKF---- 177 (423)
T ss_pred HCCCCCCCeEEECCHHHHHHHHHhcCC-CeEEEEECCCCCC--C---------CEEEECCHHHHHHHHHHHHHHhc----
Confidence 799999999999999999999999997 9 99999755443 2 78899999999999998875421
Q ss_pred CCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
|.....++|||+++ +.|+++.+..|..
T Consensus 178 ----g~~~~~~lvEe~i~-G~E~sv~~~~dg~ 204 (423)
T TIGR00877 178 ----GDAGERVVIEEFLD-GEEVSLLAFVDGK 204 (423)
T ss_pred ----CCCCCeEEEEECcc-CceEEEEEEEcCC
Confidence 12235799999998 4899999998864
No 30
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.34 E-value=5.3e-06 Score=98.62 Aligned_cols=95 Identities=16% Similarity=0.270 Sum_probs=77.1
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
+.|||+|++..+++.+++.++++++|| |+|||+..-.+| + |+.+..+.+|+.+++.+.+...
T Consensus 137 ~~Gipvp~~~~v~s~~e~~~~~~~igy-PvIVKP~~g~gg--~---------Gv~iv~~~eeL~~~~~~~~~~s------ 198 (1050)
T TIGR01369 137 EIGEPVPESEIAHSVEEALAAAKEIGY-PVIVRPAFTLGG--T---------GGGIAYNREELKEIAERALSAS------ 198 (1050)
T ss_pred HCCCCCCCeeecCCHHHHHHHHHHhCC-CeEEECCCCCCC--C---------CeEEECCHHHHHHHHHHHHhcC------
Confidence 799999999999999999999999997 999999744333 3 6778889999998888876421
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
....++||+++++.+|+.+.+.+|.. |.++.+.
T Consensus 199 -----~~~~vlVEe~I~G~~Eiev~v~rd~~--g~~~~~~ 231 (1050)
T TIGR01369 199 -----PINQVLVEKSLAGWKEIEYEVMRDSN--DNCITVC 231 (1050)
T ss_pred -----CCCcEEEEEcccCceEEEEEEEEeCC--CCEEEEe
Confidence 13579999999988999999999964 4555543
No 31
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=98.32 E-value=2.7e-06 Score=92.14 Aligned_cols=99 Identities=16% Similarity=0.273 Sum_probs=76.9
Q ss_pred hCCCCCCCcc--ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDKV--CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~--~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
++|||+|++. .+++.+++.++++++|| |||||+....+| + ||.+..+.+|+.++++.......
T Consensus 125 ~~gip~pp~~~~~~~~~~e~~~~~~~ig~-PvvvKP~~g~gs--~---------Gv~~v~~~~el~~~~~~~~~~~~--- 189 (449)
T TIGR00514 125 KAGVPCVPGSDGLVEDEEENVRIAKRIGY-PVIIKATAGGGG--R---------GMRVVREPDELVKSISMTRAEAK--- 189 (449)
T ss_pred HCCCCCCCCcccCcCCHHHHHHHHHHhCC-CEEEEeCCCCCC--C---------ccEEECCHHHHHHHHHHHHHHHH---
Confidence 7999998874 67899999999999997 999999654433 3 78899999999999887754221
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
.......++||+|+++++|+.+.+..|.. |.++.++
T Consensus 190 ----~~~~~~~vlvEe~i~g~~e~~v~v~~d~~--g~~~~~~ 225 (449)
T TIGR00514 190 ----AAFGNDGVYIEKYIENPRHVEIQVLADKY--GNAIYLG 225 (449)
T ss_pred ----HhCCCCCEEEEECCCCCeEEEEEEEEcCC--CCEEEEe
Confidence 01113569999999988999999999863 5566665
No 32
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.32 E-value=5.3e-06 Score=98.88 Aligned_cols=96 Identities=15% Similarity=0.267 Sum_probs=76.6
Q ss_pred hhCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785 18 PVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ 97 (525)
Q Consensus 18 ~~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~ 97 (525)
+++|||+|++..+++.+|+.++++++|| |||||+..-.+| + |+.+..+.+|+.+++++.+...
T Consensus 137 ~~~Gipvp~~~~v~s~~e~~~~~~~ig~-PvVVKP~~g~gg--~---------Gv~iv~~~eeL~~a~~~~~~~s----- 199 (1066)
T PRK05294 137 KKIGLPVPRSGIAHSMEEALEVAEEIGY-PVIIRPSFTLGG--T---------GGGIAYNEEELEEIVERGLDLS----- 199 (1066)
T ss_pred HHCCcCCCCeeeeCCHHHHHHHHHHcCC-CeEEEcCCCCCC--C---------CeEEECCHHHHHHHHHHHHhhC-----
Confidence 3799999999999999999999999997 999999643332 3 6778889999999888765321
Q ss_pred CCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
....++||+++++.+|+.+.+.+|... -++.+.
T Consensus 200 ------~~~~vlvEe~I~G~~Eisv~v~rd~~g--~~~~~~ 232 (1066)
T PRK05294 200 ------PVTEVLIEESLLGWKEYEYEVMRDKND--NCIIVC 232 (1066)
T ss_pred ------CCCeEEEEEcccCceEEEEEEEEcCCC--CEEEEe
Confidence 135699999999889999999999753 444443
No 33
>PLN02735 carbamoyl-phosphate synthase
Probab=98.31 E-value=6.4e-06 Score=97.99 Aligned_cols=88 Identities=17% Similarity=0.230 Sum_probs=73.9
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcC-CCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLN-FKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ 97 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg-~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~ 97 (525)
++|||+|++..+++.+++.++++++| | |||||+....+| + ||.+..|.+|+++++++.+..+.
T Consensus 154 ~~GIpvp~~~~v~s~eea~~~~~~iG~y-PvVVKP~~~~GG--~---------Gv~iv~n~eEL~~a~~~a~~~s~---- 217 (1102)
T PLN02735 154 KIGLKTPPSGIATTLDECFEIAEDIGEF-PLIIRPAFTLGG--T---------GGGIAYNKEEFETICKAGLAASI---- 217 (1102)
T ss_pred HCCCCCCCeeEeCCHHHHHHHHHHhCCC-CEEEEeCCCCCC--C---------ceEEECCHHHHHHHHHHHHhcCC----
Confidence 79999999999999999999999998 7 999999654443 2 56788899999999988653211
Q ss_pred CCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
...++||+++.+++|+.+.+.+|..
T Consensus 218 -------~~~VLVEe~I~G~kE~ev~Vl~D~~ 242 (1102)
T PLN02735 218 -------TSQVLVEKSLLGWKEYELEVMRDLA 242 (1102)
T ss_pred -------CCeEEEEEecCCCeEEEEEEEEcCC
Confidence 3579999999988999999999965
No 34
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=98.31 E-value=3.8e-06 Score=89.14 Aligned_cols=90 Identities=13% Similarity=0.158 Sum_probs=73.7
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||+|++..+++.+++.++++++|| |||+|+....+| + ||.+..+.+++.++++.+.....
T Consensus 124 ~~gip~p~~~~~~s~~~l~~~~~~~g~-P~VvKP~~g~~s--~---------Gv~~v~~~~el~~~~~~~~~~~~----- 186 (395)
T PRK09288 124 ELGLPTSPYRFADSLEELRAAVEEIGY-PCVVKPVMSSSG--K---------GQSVVRSPEDIEKAWEYAQEGGR----- 186 (395)
T ss_pred hCCCCCCCceEECCHHHHHHHHHhcCC-CEEEEeCCCcCC--C---------CeEEECCHHHHHHHHHHHHhhcc-----
Confidence 589999999999999999999999997 999999744332 3 78899999999999988754211
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
+. ...++||||++.+.|+.+.+.+|..
T Consensus 187 ---~~-~~~~lvEefi~~~~E~sv~~~~~~~ 213 (395)
T PRK09288 187 ---GG-AGRVIVEEFIDFDYEITLLTVRAVD 213 (395)
T ss_pred ---cc-CCCEEEEEecCCCEEEEEEEEEcCC
Confidence 00 2469999999988999999888865
No 35
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=98.30 E-value=1.2e-05 Score=87.13 Aligned_cols=99 Identities=17% Similarity=0.222 Sum_probs=75.8
Q ss_pred hCCCCCCCc--cccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDK--VCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~--~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
++|||+|++ ..+++.+++.+++.++|| |||||+....+ |+ ||.+..+.+|+.+++++.......
T Consensus 125 ~~gIp~pp~~~~~v~~~~~~~~~~~~~g~-PvvvKP~~g~g--s~---------Gv~iv~~~~el~~~~~~~~~~~~~-- 190 (451)
T PRK08591 125 KAGVPVVPGSDGPVDDEEEALAIAKEIGY-PVIIKATAGGG--GR---------GMRVVRTEAELEKAFSMARAEAKA-- 190 (451)
T ss_pred HcCCCCCCCcccccCCHHHHHHHHHHcCC-CEEEEECCCCC--Cc---------eEEEECCHHHHHHHHHHHHHHHHH--
Confidence 799999987 467899999999999997 99999964433 23 888989999999999887542110
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
. .+ ...++||+++++++|+.+.+..|.. |.++.++
T Consensus 191 ~---~~--~~~vlvEe~i~g~~e~~v~v~~d~~--g~~~~~~ 225 (451)
T PRK08591 191 A---FG--NPGVYMEKYLENPRHIEIQVLADGH--GNAIHLG 225 (451)
T ss_pred h---cC--CCCEEEEeCCCCCcEEEEEEEEcCC--CCEEEEe
Confidence 0 11 2469999999888899999999875 4566554
No 36
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=98.29 E-value=2.8e-05 Score=86.76 Aligned_cols=93 Identities=14% Similarity=0.201 Sum_probs=73.5
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeecc-ccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILA-GGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ 97 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~-~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~ 97 (525)
..|||+|++..+++.+++.++++++|| |+|||+.... + |+ |+.+..+.+++.++++.+...
T Consensus 131 ~~GIptp~~~~v~~~~el~~~~~~ig~-P~VvKP~~ggs~--g~---------Gv~~v~~~~eL~~a~~~~~~~------ 192 (577)
T PLN02948 131 KHGIPLPEFMEIDDLESAEKAGDLFGY-PLMLKSRRLAYD--GR---------GNAVAKTEEDLSSAVAALGGF------ 192 (577)
T ss_pred HCCcCCCCeEEeCCHHHHHHHHHhcCC-cEEEEeCCCCCC--CC---------CeEEECCHHHHHHHHHHhhCC------
Confidence 799999999999999999999999997 9999995331 2 23 677888999999888876321
Q ss_pred CCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
-..++||+|++..+|+.+.+.+|.. |.+..+.
T Consensus 193 -------~~~vlvEefI~~~~EisV~v~r~~~--G~i~~~p 224 (577)
T PLN02948 193 -------ERGLYAEKWAPFVKELAVMVARSRD--GSTRCYP 224 (577)
T ss_pred -------CCcEEEEecCCCCeEEEEEEEECCC--CCEEEec
Confidence 1358999999988999999998854 4444443
No 37
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=98.22 E-value=0.0002 Score=77.67 Aligned_cols=212 Identities=19% Similarity=0.298 Sum_probs=131.6
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHH
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNA 380 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a 380 (525)
.|+|++||-||+.+....|.+...|+-..-.+-++++++- .+.+.++.+.+||++++|++.+- +..+.... .++
T Consensus 150 ~G~valvsqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~d~-~~~d~l~~l~~D~~t~~I~ly~E-~~~~~~~f----~~a 223 (447)
T TIGR02717 150 KGGIAFISQSGALLTALLDWAEKNGVGFSYFVSLGNKADI-DESDLLEYLADDPDTKVILLYLE-GIKDGRKF----LKT 223 (447)
T ss_pred CCCEEEEechHHHHHHHHHHHHhcCCCcceEEECCchhhC-CHHHHHHHHhhCCCCCEEEEEec-CCCCHHHH----HHH
Confidence 5789999999999999999999999876666666655432 37799999999999999987643 23333333 333
Q ss_pred HHhcCCCCcEEEEeCCcch----------------HH-HHHHHhhCCCCccccCCHHHHHHHHHHhhccc----------
Q psy7785 381 CKSFKLSIPLVVRLEGTNV----------------QE-GKRILDESKLPLIFASDLDEAASLVNACKSFK---------- 433 (525)
Q Consensus 381 ~~~~~~~kPivv~~~g~~~----------------~~-~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~---------- 433 (525)
++....+|||++...|... .. ....|++.|+... +++++-...+..+....
T Consensus 224 a~~a~~~KPVv~~k~Grs~~g~~aa~sHtgalag~~~~~~a~~~~~Gv~~~--~~~~el~~~~~~l~~~~~~~g~rvaiv 301 (447)
T TIGR02717 224 AREISKKKPIVVLKSGTSEAGAKAASSHTGALAGSDEAYDAAFKQAGVIRA--DSIEELFDLARLLSNQPLPKGNRVAII 301 (447)
T ss_pred HHHHcCCCCEEEEecCCChhhhhhhhhccccccChHHHHHHHHHHCCeEEe--CCHHHHHHHHHHHhcCCCCCCCeEEEE
Confidence 3332237999987666311 11 1347889999988 88888777766543210
Q ss_pred ------------------CCCCeE---------------------EEeCC-CCHH---HHHH-HHHHCCCCeEE--Ec--
Q psy7785 434 ------------------LSIPLV---------------------VRLEG-TNVQ---EGKR-ILDESKLPLIF--AS-- 465 (525)
Q Consensus 434 ------------------~~~P~~---------------------~~l~g-~~e~---eak~-LL~ayGIpv~l--A~-- 465 (525)
...|.. ..+.+ .+.+ .+.+ +++.-++...+ ..
T Consensus 302 s~sGG~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~~lp~~~~~~NPlDl~~~~~~~~~~~al~~l~~dp~vd~Vlv~~~~~ 381 (447)
T TIGR02717 302 TNAGGPGVIATDACEENGLELAELSEATKNKLRNILPPEASIKNPVDVLGDATPERYAKALKTVAEDENVDGVVVVLTPT 381 (447)
T ss_pred ECCchHHHHHHHHHHHcCCCcCCCCHHHHHHHHHhCccccccCCCEecCCCCCHHHHHHHHHHHHcCCCCCEEEEEccCC
Confidence 011100 00101 1111 2333 34333555411 11
Q ss_pred ---ChhHHH-HHHHHhhhcCCCCcEEEEEec-CChHHHHHhhhhCCCCceeccCHHHHHHHhH
Q psy7785 466 ---DLDEAA-SLVNACKSFKLSIPLVVRLEG-TNVQEGKRILDESKLPLIFASDLDEAANWFI 523 (525)
Q Consensus 466 ---s~deAv-~~~~aa~~~~~G~PVVlKi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (525)
..++.. ..++..++. .+-||+.-..| +..++.+++|.+.|+++ ++++++|+.+..
T Consensus 382 ~~~~~~~~a~~l~~~~~~~-~~KPvv~~~~gg~~~~~~~~~L~~~Gip~--f~~p~~A~~al~ 441 (447)
T TIGR02717 382 AMTDPEEVAKGIIEGAKKS-NEKPVVAGFMGGKSVDPAKRILEENGIPN--YTFPERAVKALS 441 (447)
T ss_pred ccCCHHHHHHHHHHHHHhc-CCCcEEEEecCCccHHHHHHHHHhCCCCc--cCCHHHHHHHHH
Confidence 112221 222233331 15699887775 67889999999988777 999999998753
No 38
>PF13549 ATP-grasp_5: ATP-grasp domain; PDB: 1WR2_A.
Probab=98.22 E-value=1.3e-06 Score=85.75 Aligned_cols=46 Identities=20% Similarity=0.447 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCCh
Q psy7785 445 TNVQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNV 495 (525)
Q Consensus 445 ~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~ 495 (525)
+++.|+++||++||||+ .+++|.+||.+ +|+++ |||||||++|+..
T Consensus 10 L~e~e~~~lL~~yGI~~~~~~~~~~~~ea~~---~a~~i--g~PvvlKi~sp~i 58 (222)
T PF13549_consen 10 LTEAEAKELLAAYGIPVPPTRLVTSAEEAVA---AAEEI--GFPVVLKIVSPDI 58 (222)
T ss_dssp E-HHHHHHHHHTTT------EEESSHHHHHH---HHHHH---SSEEEEEE-TT-
T ss_pred cCHHHHHHHHHHcCcCCCCeeEeCCHHHHHH---HHHHh--CCCEEEEEecCCC
Confidence 47899999999999999 89999999999 57775 9999999999874
No 39
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=98.19 E-value=1e-05 Score=96.23 Aligned_cols=87 Identities=13% Similarity=0.189 Sum_probs=73.3
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
+.|||+|++..+++.+|+.++++++|| |||+|+....+| + ||.+..+.+++++++++......
T Consensus 679 ~~GIp~P~~~~v~s~ee~~~~~~~igy-PvIVKP~~~~Gg--~---------gv~iv~~~eeL~~~l~~a~~~s~----- 741 (1050)
T TIGR01369 679 ELGIPQPKWKTATSVEEAVEFASEIGY-PVLVRPSYVLGG--R---------AMEIVYNEEELRRYLEEAVEVSP----- 741 (1050)
T ss_pred HCCcCCCCeEEECCHHHHHHHHHhcCC-CEEEEECCCCCC--C---------CeEEECCHHHHHHHHHHHHHhCC-----
Confidence 799999999999999999999999997 999999644443 3 78888899999999998754211
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcC
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDR 128 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~ 128 (525)
...++||+|++++.|+.+.+..|.
T Consensus 742 ------~~~vlVeefI~~G~E~~Vd~l~d~ 765 (1050)
T TIGR01369 742 ------EHPVLIDKYLEDAVEVDVDAVSDG 765 (1050)
T ss_pred ------CCCEEEeecCCCCeEEEEEEEEeC
Confidence 245999999998999999999985
No 40
>PLN02735 carbamoyl-phosphate synthase
Probab=98.17 E-value=2e-05 Score=93.86 Aligned_cols=95 Identities=18% Similarity=0.199 Sum_probs=76.8
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||+|++..+++.+|+.++++++|| ||+||+....+| + |+.+..+.+|+.+++++....
T Consensus 712 ~~GIp~p~~~~v~s~eea~~~a~~iGy-PvvVKP~~g~gG--~---------G~~iV~~~eeL~~al~~a~~~------- 772 (1102)
T PLN02735 712 ELKIEQPKGGIARSEADALAIAKRIGY-PVVVRPSYVLGG--R---------AMEIVYSDDKLKTYLETAVEV------- 772 (1102)
T ss_pred HcCCCCCCeeEeCCHHHHHHHHHhcCC-CeEEEeCCCCCC--C---------cEEEECCHHHHHHHHHHHHHh-------
Confidence 799999999999999999999999998 999999654333 3 788889999999998887532
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
.+ ...++||+++++++|+.+.+.+|.. |-+++++
T Consensus 773 --~~--~~~vlVEefI~~g~Ei~V~vl~D~~--G~vv~~~ 806 (1102)
T PLN02735 773 --DP--ERPVLVDKYLSDATEIDVDALADSE--GNVVIGG 806 (1102)
T ss_pred --cC--CCCEEEEEecCCcEEEEEEEEECCC--CCEEEec
Confidence 01 1359999999889999999999965 3445443
No 41
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=98.17 E-value=3e-05 Score=84.57 Aligned_cols=99 Identities=20% Similarity=0.242 Sum_probs=74.8
Q ss_pred hCCCCCCCccc--cCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDKVC--LEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~~--~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
++|||+|++.. +++.+++.++++++|| |||||+..-.+ |+ ||.+..+.+|+.+++++.......
T Consensus 124 ~~GIp~pp~~~~~~~~~~e~~~~~~~igy-PvvvKp~~ggG--g~---------Gv~~v~~~~eL~~a~~~~~~~~~~-- 189 (472)
T PRK07178 124 KAGVPVTPGSEGNLADLDEALAEAERIGY-PVMLKATSGGG--GR---------GIRRCNSREELEQNFPRVISEATK-- 189 (472)
T ss_pred HCCCCCCCCcCcCCCCHHHHHHHHHHcCC-cEEEEeCCCCC--CC---------CceEeCCHHHHHHHHHHHHHHHHH--
Confidence 79999988764 7899999999999997 99999954433 33 788889999999988876543220
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
. .+ ...++||++++.++|+.+.+..|.. |-++.+.
T Consensus 190 ~---~~--~~~v~iE~~i~~~~eiev~v~~d~~--G~~v~~~ 224 (472)
T PRK07178 190 A---FG--SAEVFLEKCIVNPKHIEVQILADSH--GNVVHLF 224 (472)
T ss_pred h---cC--CCCEEEEEcCCCCeEEEEEEEEECC--CCEEEEE
Confidence 0 11 2468999999889999999999865 3444443
No 42
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=98.15 E-value=1.1e-05 Score=85.31 Aligned_cols=89 Identities=13% Similarity=0.187 Sum_probs=71.0
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
+.|||+|++..+++.+++..+++++|| |+|+|+-...+| + ||.+..+.+++.++++.+.....
T Consensus 111 ~~gip~p~~~~~~~~~~~~~~~~~~g~-P~VvKP~~g~~s--~---------gv~~v~~~~el~~~~~~~~~~~~----- 173 (380)
T TIGR01142 111 ELGLPTSRYMFADSLDELREAVEKIGY-PCVVKPVMSSSG--K---------GQSVVRGPEDIEKAWEYAQEGAR----- 173 (380)
T ss_pred HCCCCCCCceEeCCHHHHHHHHHHcCC-CEEEEECCCcCC--C---------CeEEECCHHHHHHHHHHHHhhcc-----
Confidence 689999999999999999999999997 999999633332 2 78899999999999888753211
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcC
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDR 128 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~ 128 (525)
.. -..++||||++++.|+.+.+.++.
T Consensus 174 ---~~-~~~~ivEe~i~~~~E~sv~~~~~~ 199 (380)
T TIGR01142 174 ---GG-AGRVIVEEFIDFDYEITLLTVRHV 199 (380)
T ss_pred ---CC-CCCEEEEEecCCCEEEEEEEEEcC
Confidence 00 246999999997889998887654
No 43
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=98.14 E-value=9.2e-06 Score=88.52 Aligned_cols=92 Identities=15% Similarity=0.189 Sum_probs=72.7
Q ss_pred hCCCCCCCcc--ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDKV--CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~--~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
++|||+|++. .+++.+++.++++++|| |||||+..-.+ |+ ||.+..+.+++.++++........
T Consensus 128 ~~GIp~~p~~~~~v~~~~e~~~~~~~igy-PvvvKp~~ggg--g~---------Gv~~v~~~~eL~~a~~~~~~~~~~-- 193 (467)
T PRK12833 128 RAGVPTVPGSDGVVASLDAALEVAARIGY-PLMIKAAAGGG--GR---------GIRVAHDAAQLAAELPLAQREAQA-- 193 (467)
T ss_pred HcCCCCCCCcCcCcCCHHHHHHHHHHhCC-CEEEEECCCCC--CC---------eEEEECCHHHHHHHHHHHHHHHHH--
Confidence 7999999885 78999999999999997 99999964433 34 888999999999988876432110
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
. .+ ...++||++++.++|+.+.+..|..
T Consensus 194 ~---~~--~~~vlvEefi~~~~ei~v~v~~dg~ 221 (467)
T PRK12833 194 A---FG--DGGVYLERFIARARHIEVQILGDGE 221 (467)
T ss_pred h---cC--CCcEEEEecCCCCEEEEEEEEeCCC
Confidence 0 11 2469999999888999999999875
No 44
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=98.14 E-value=1.3e-05 Score=87.93 Aligned_cols=99 Identities=20% Similarity=0.312 Sum_probs=76.5
Q ss_pred hCCCCCCCccc--cCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDKVC--LEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~~--~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
++|||+|++.. +++.+++.++++++|| ||+||+..-.| || ||++..+.+++.++++........
T Consensus 125 ~~GVpv~p~~~~~v~~~~e~~~~a~~igy-PvvIKp~~GgG--G~---------Gv~iv~~~~eL~~a~~~~~~~a~~-- 190 (499)
T PRK08654 125 KAGVPVLPGTEEGIEDIEEAKEIAEEIGY-PVIIKASAGGG--GI---------GMRVVYSEEELEDAIESTQSIAQS-- 190 (499)
T ss_pred HcCcCCCCCcCcCCCCHHHHHHHHHHhCC-CEEEEeCCCCC--CC---------eEEEeCCHHHHHHHHHHHHHHHHH--
Confidence 79999988765 6899999999999998 99999954333 34 899999999999988876532110
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
. .+ -..++||+++++.+|+.+.+..|.. |.++.++
T Consensus 191 ~---f~--~~~v~vE~~I~~~r~ieVqvl~d~~--G~vv~l~ 225 (499)
T PRK08654 191 A---FG--DSTVFIEKYLEKPRHIEIQILADKH--GNVIHLG 225 (499)
T ss_pred h---CC--CCeEEEEeCCCCCcEEEEEEEEcCC--CCEEEEe
Confidence 0 11 2469999999988999999999964 5666655
No 45
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=98.12 E-value=1.5e-05 Score=85.70 Aligned_cols=99 Identities=19% Similarity=0.277 Sum_probs=75.9
Q ss_pred hCCCCCCCccc--cCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDKVC--LEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~~--~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
+.|||++++.- ..+.+|+.++++++|| ||+||+-.-.|| + |++++.+.+++.+++..+.+....
T Consensus 125 ~aGVP~vpgs~~~~~~~ee~~~~a~~iGy-PVivKa~~GgGg--~---------G~r~v~~~~el~~a~~~~~~ea~~-- 190 (449)
T COG0439 125 KAGVPVVPGSDGAVADNEEALAIAEEIGY-PVIVKAAAGGGG--R---------GMRVVRNEEELEAAFEAARGEAEA-- 190 (449)
T ss_pred HcCCCcCCCCCCCcCCHHHHHHHHHHcCC-CEEEEECCCCCc--c---------cEEEECCHHHHHHHHHHHHHHHHH--
Confidence 89999999872 4667899999999997 999999755444 3 899999999999999999875331
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
. -| -..|++|+++...+=.-+.+.-|.. |.+|=.+
T Consensus 191 ~---fg--~~~v~iEk~i~~~rhievqv~gD~~--g~~i~l~ 225 (449)
T COG0439 191 A---FG--NPRVYLEKFIEGPRHIEVQVLGDGH--GNVIHLG 225 (449)
T ss_pred h---cC--CCcEEeeeeccCCceEEEEEEEcCc--ccEEEEE
Confidence 1 12 2349999999877666777777765 3555544
No 46
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=98.09 E-value=2.8e-05 Score=81.24 Aligned_cols=104 Identities=15% Similarity=0.210 Sum_probs=82.2
Q ss_pred HhhhhhCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccc
Q psy7785 14 YLVKPVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKL 93 (525)
Q Consensus 14 ~~~k~~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~ 93 (525)
.+.+.+.|+|+| +.++++.+++.+.++.+|| ||++|+-.-.|| . |+.+..|.+|+.+.....+...
T Consensus 121 ke~m~eigi~~P-~~~~~~~~e~~~~~~~ig~-PvIVrP~~~lGG--~---------G~~i~~n~eel~~~~~~~l~~s- 186 (400)
T COG0458 121 KEAMREIGIPVP-SRIAHSVEEADEIADEIGY-PVIVKPSFGLGG--S---------GGGIAYNEEELEEIIEEGLRAS- 186 (400)
T ss_pred HHHHHHcCCCCC-ccccccHHHHhhhHhhcCC-CEEEecCcCCCC--C---------ceeEEeCHHHHHHHHHhccccC-
Confidence 344448999999 7799999999999999997 999999644443 1 4456778899998888876532
Q ss_pred ccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCc
Q psy7785 94 ITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGT 143 (525)
Q Consensus 94 ~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv 143 (525)
.++.+|+|+++.++.|+.+.+.+|..- -+++++. .+-.
T Consensus 187 ----------~~~~vl~eesi~G~ke~e~ev~rd~~~-n~ivvc~-men~ 224 (400)
T COG0458 187 ----------PVEEVLIEESIIGWKEFEYEVVRDGKD-NCIVVCN-MENL 224 (400)
T ss_pred ----------ccccceeeeeecCceEEEEEEEEeCCC-CEEEEEe-CCcc
Confidence 257899999999999999999999987 4666666 4433
No 47
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=98.07 E-value=0.00015 Score=74.32 Aligned_cols=82 Identities=17% Similarity=0.225 Sum_probs=61.4
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
.+|||||++.++++.. ...+.++| |+|||+-.- |-++ ||.+..+.+++.+++++...
T Consensus 108 ~~gIptp~~~~~~~~~---~~~~~~~~-P~vVKP~~g--gss~---------Gv~~v~~~~eL~~a~~~~~~-------- 164 (296)
T PRK14569 108 HHRMPTPMAKFLTDKL---VAEDEISF-PVAVKPSSG--GSSI---------ATFKVKSIQELKHAYEEASK-------- 164 (296)
T ss_pred HCCCCCCCeEEEchhh---hhHhhcCC-CEEEEeCCC--CCCc---------CeEEcCCHHHHHHHHHHHHh--------
Confidence 7999999998876432 24577897 999999532 2122 68888899999988877521
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcCCC
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDRLH 130 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f 130 (525)
...++||++++ ++|+.+++..|...
T Consensus 165 ------~~~~lvEefI~-G~E~tv~vl~~~~~ 189 (296)
T PRK14569 165 ------YGEVMIEQWVT-GKEITVAIVNDEVY 189 (296)
T ss_pred ------cCCEEEEcccc-cEEEEEEEECCcCc
Confidence 12589999997 69999999877654
No 48
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=98.02 E-value=2.5e-05 Score=73.12 Aligned_cols=95 Identities=19% Similarity=0.260 Sum_probs=67.1
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||+|++..+++.+++.+++..+++ |+|||+..-.++ -||.+..+.+++.+.++++.....
T Consensus 14 ~~gv~~P~~~~~~~~~~~~~~~~~~~~-p~vvKp~~g~gs-----------~gv~~~~~~~~l~~~~~~~~~~~~----- 76 (184)
T PF13535_consen 14 KAGVPVPKTRIVDSEEELRAFAEDLGF-PFVVKPVDGSGS-----------RGVFIVHSPEELEAALAEIREDSP----- 76 (184)
T ss_dssp HHTS----EEEECSHHHHHHHHHHSSS-SEEEEESS-STT-----------TT-EEESSHHHHHHHHHHHHHHHS-----
T ss_pred HcCcCCCCEEEECCHHHHHHHHHHcCC-CEEEEcCccccC-----------CCEEEeCCHHHHHHHHHHHHHhcc-----
Confidence 699999999999999999999999997 999999755433 278888899999999998865311
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
.....++||++++ +.|+.+-+..+ . |.++.++
T Consensus 77 ----~~~~~~ivqe~i~-g~e~~~~~~~~--~-G~~~~~~ 108 (184)
T PF13535_consen 77 ----LGNGPVIVQEYIP-GDEYSVDGVVD--D-GEVVFAG 108 (184)
T ss_dssp -----HSSSEEEEE----SEEEEEEEEEE--T-TEEEEEE
T ss_pred ----cCCccEEEEEeee-eeeEEEEEEEE--c-ceEEEEE
Confidence 1135799999999 68999888877 2 4554444
No 49
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.01 E-value=2.5e-05 Score=93.66 Aligned_cols=99 Identities=18% Similarity=0.233 Sum_probs=76.9
Q ss_pred hCCCCCCC-ccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785 19 VSTVHSTD-KVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ 97 (525)
Q Consensus 19 ~~GIpvp~-~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~ 97 (525)
++|||+++ +.++++.+|+.++++++|| |||||+....+| + ||.+..+.+|+.++++++..... . .
T Consensus 124 ~~GVPt~p~~~lv~s~dea~~~a~~igy-PvVVKP~~ggGG--~---------GV~iv~~~eEL~~a~~~~~~~~~-~-~ 189 (1201)
T TIGR02712 124 AAGVPLLPGTGLLSSLDEALEAAKEIGY-PVMLKSTAGGGG--I---------GMQKCDSAAELAEAFETVKRLGE-S-F 189 (1201)
T ss_pred HCCCCCCCceeecCCHHHHHHHHHhcCC-eEEEEECCCCCC--C---------CEEEECCHHHHHHHHHHHHHHHH-H-h
Confidence 79999866 6678999999999999997 999999755433 4 78899999999988888753211 0 0
Q ss_pred CCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
.+ ..+++||+|+++++|+.+.+..|.. |.++.++
T Consensus 190 ---f~--~~~vlVEefI~g~~eveV~v~~Dg~--g~vv~lg 223 (1201)
T TIGR02712 190 ---FG--DAGVFLERFVENARHVEVQIFGDGK--GKVVALG 223 (1201)
T ss_pred ---cC--CCcEEEEecCCCCEEEEEEEEECCC--CeEEEee
Confidence 11 2469999999988999999999975 4566664
No 50
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=98.01 E-value=4.8e-05 Score=90.71 Aligned_cols=85 Identities=12% Similarity=0.202 Sum_probs=70.6
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||+|++..+++.+|+.++++++|| |||+|+....+| + ||.+..+.+++++++++... .
T Consensus 680 ~~GIp~P~~~~~~s~ee~~~~~~~igy-PvVVKP~~~~Gg--~---------gv~iv~~~eeL~~~l~~~~s--~----- 740 (1068)
T PRK12815 680 ELGLPHVPGLTATDEEEAFAFAKRIGY-PVLIRPSYVIGG--Q---------GMAVVYDEPALEAYLAENAS--Q----- 740 (1068)
T ss_pred HcCcCCCCeEEeCCHHHHHHHHHhcCC-CEEEEeCCCCCC--C---------CEEEECCHHHHHHHHHHhhc--C-----
Confidence 799999999999999999999999997 999999644443 2 78888899999988887611 0
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
...++||++++ +.|+.+.+..|..
T Consensus 741 ------~~~vlIeefI~-G~E~~Vd~i~dg~ 764 (1068)
T PRK12815 741 ------LYPILIDQFID-GKEYEVDAISDGE 764 (1068)
T ss_pred ------CCCEEEEEeec-CceEEEEEEEcCC
Confidence 24599999996 6799999999864
No 51
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=98.01 E-value=0.00024 Score=73.02 Aligned_cols=85 Identities=16% Similarity=0.281 Sum_probs=63.8
Q ss_pred hCCCCCCCccccC-CHHHH-----HHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccc
Q psy7785 19 VSTVHSTDKVCLE-DARTA-----TNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHK 92 (525)
Q Consensus 19 ~~GIpvp~~~~~~-~~eea-----~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~ 92 (525)
++|||+|++.+++ +.++. ..+...++| |+|+|+....++ + ||.+..+.+++.+++++....
T Consensus 115 ~~gip~p~~~~~~~~~~~~~~~~~~~~~~~~~~-P~vvKP~~~~~s--~---------Gv~~v~~~~el~~~~~~~~~~- 181 (315)
T TIGR01205 115 ALGLPTPDYIVLTQNRASADELECEQVAEPLGF-PVIVKPAREGSS--V---------GVSKVKSEEELQAALDEAFEY- 181 (315)
T ss_pred HCCCCCCCEEEEecccccchhhhHHHHHHhcCC-CEEEEeCCCCCc--c---------CEEEECCHHHHHHHHHHHHhc-
Confidence 7999999999887 54432 234567897 999999644322 2 688888999999888876421
Q ss_pred cccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 93 LITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 93 ~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
...++||++++ ++|+.+++..+..
T Consensus 182 ------------~~~~lvEe~i~-G~e~~v~vi~~~~ 205 (315)
T TIGR01205 182 ------------DEEVLVEQFIK-GRELEVSILGNEE 205 (315)
T ss_pred ------------CCcEEEEcCCC-CEEEEEEEECCCC
Confidence 13589999997 8999999998543
No 52
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=98.00 E-value=6.3e-05 Score=68.46 Aligned_cols=117 Identities=18% Similarity=0.254 Sum_probs=69.9
Q ss_pred CcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHH
Q psy7785 302 GNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNAC 381 (525)
Q Consensus 302 ~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~ 381 (525)
|+|++||.||+.+....|.+...|+-..-.+-++.+++- .+.++++.+.+||++++|++.+- ++.+..... +++
T Consensus 2 G~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv-~~~d~l~~~~~D~~t~~I~ly~E-~~~d~~~f~----~~~ 75 (138)
T PF13607_consen 2 GGVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADV-DFADLLEYLAEDPDTRVIVLYLE-GIGDGRRFL----EAA 75 (138)
T ss_dssp -SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS--HHHHHHHHCT-SS--EEEEEES---S-HHHHH----HHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccC-CHHHHHHHHhcCCCCCEEEEEcc-CCCCHHHHH----HHH
Confidence 689999999999999999999999854444444444332 37899999999999998887543 233344333 343
Q ss_pred HhcCCCCcEEEEeCCc-----------------chHHHHHHHhhCCCCccccCCHHHHHHHH
Q psy7785 382 KSFKLSIPLVVRLEGT-----------------NVQEGKRILDESKLPLIFASDLDEAASLV 426 (525)
Q Consensus 382 ~~~~~~kPivv~~~g~-----------------~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al 426 (525)
++....|||++...|. ........|++.|+-.. +++++-+..+
T Consensus 76 ~~a~~~KPVv~lk~Grt~~g~~aa~sHTgslag~~~~~~a~~~~aGv~~v--~~~~el~~~~ 135 (138)
T PF13607_consen 76 RRAARRKPVVVLKAGRTEAGARAAASHTGSLAGDDAVYDAALRQAGVVRV--DDLDELLDAA 135 (138)
T ss_dssp HHHCCCS-EEEEE---------------------HHHHHHHHHHCTEEEE--SSHHHHHHHH
T ss_pred HHHhcCCCEEEEeCCCchhhhhhhhccCCcccCcHHHHHHHHHHcCceEE--CCHHHHHHHH
Confidence 3322349999876552 11222457788888766 8877766544
No 53
>PRK08462 biotin carboxylase; Validated
Probab=98.00 E-value=3.7e-05 Score=83.21 Aligned_cols=99 Identities=20% Similarity=0.286 Sum_probs=74.2
Q ss_pred hCCCCCCCcc--ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDKV--CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~--~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
+.|||+|++. .+.+.+++..+++++|| |||||+..-.+| + ||.+..+.+++.+++.+.......
T Consensus 127 ~~gIp~pp~~~~~~~~~~~~~~~~~~~g~-PvvvKP~~g~gs--~---------Gv~~v~~~~eL~~~~~~~~~~~~~-- 192 (445)
T PRK08462 127 RAGVPVIPGSDGALKSYEEAKKIAKEIGY-PVILKAAAGGGG--R---------GMRVVEDESDLENLYLAAESEALS-- 192 (445)
T ss_pred HCCCCCCCCcccccCCHHHHHHHHHHcCC-CEEEEeCCCCCC--C---------CeEEECCHHHHHHHHHHHHHHHHh--
Confidence 7999999864 57899999999999997 999999644433 3 788888999999888765432110
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
. .+ -..++||+++++++|+.+.+..|.. |-++.+|
T Consensus 193 ~---~~--~~~vlvEe~i~g~~e~~v~v~~~~~--g~~~~~g 227 (445)
T PRK08462 193 A---FG--DGTMYMEKFINNPRHIEVQILGDKH--GNVIHVG 227 (445)
T ss_pred c---cC--CCcEEEeccCCCCeEEEEEEEECCC--CCEEEEE
Confidence 0 11 1359999999888999999988853 4566655
No 54
>KOG1254|consensus
Probab=97.99 E-value=7.8e-06 Score=86.10 Aligned_cols=289 Identities=17% Similarity=0.083 Sum_probs=184.6
Q ss_pred cEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccCCCCCcccCeEEEEeeeCC------ceeE
Q psy7785 47 EYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNI------TRET 120 (525)
Q Consensus 47 PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~~~~------~~E~ 120 (525)
..|.|.+.+.+.|+| .|-|.++.+-.+..+..+.+.+.... -.+.-|. ..-+.||+++++ -.|.
T Consensus 81 rsv~k~~m~~~k~~k-------i~lvAiiAegvpe~~~~kl~~~a~~k--~~~iiGP-aTvggVePg~fkignt~g~~dn 150 (600)
T KOG1254|consen 81 RSVAKPDMLALKRGK-------IGLVAIIAEGVPEADTRKLRAGAEVK--GVGIIGP-ATVGGVEPGVFKIGNTGGMMDN 150 (600)
T ss_pred hhhhcchHHHhhcCc-------ceEEEEEecCCcHHHHHHHHhccccc--cceEEee-eeeccccCCccccCCCCcchhh
Confidence 468899888888888 78999998766666666666554321 1111232 567889999976 5899
Q ss_pred EEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEEEecCCCCCCCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHh
Q psy7785 121 YFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLF 200 (525)
Q Consensus 121 ~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~~l~p~~~l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 200 (525)
|+.+..+|. |.++.||..||+++|+..... ++.- -|..++ .. ..=+..+. .++.-
T Consensus 151 il~~klyR~--Gsv~~vS~sGGmsnE~nn~is----rtt~-g~~egi------ai-ggd~~pgS----------Tl~dh- 205 (600)
T KOG1254|consen 151 ILNSKLYRP--GSVIYVSRSGGMSNELNNIIS----RTTD-GPYEGI------AI-GGDRYPGS----------TLIDH- 205 (600)
T ss_pred hhhhcccCC--ccEEEEecCCCcchhhhhhhh----heec-cceeee------ec-cCCCccCc----------hHhhh-
Confidence 999999986 789999999999999987432 2221 111110 00 00000000 11110
Q ss_pred hhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcCCCceeeee-------ceeEecCCc---EEEeeeEEEecCCchhc
Q psy7785 201 LSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEIN-------PLVETDERE---VISVDAKINFDDNAEFR 270 (525)
Q Consensus 201 r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~~~~~leiN-------Pl~v~~~g~---~~alDa~i~ld~~a~fr 270 (525)
.|.-..+.+.++++.|+.++-+++-+.+|+| ||++-.-|. .+-+|....+++++.|.
T Consensus 206 -------------i~r~q~~~~vk~Iv~Lgevgg~~ey~~~e~~k~g~~tkPlVaw~~gtcA~~F~~evqfghagtaa~~ 272 (600)
T KOG1254|consen 206 -------------IPREQHDPLVKFIVVLGEVGGDEEYTFLEANKEGKITKPLVAWCIGTCADMFPLEVQFGHAGTAAFK 272 (600)
T ss_pred -------------hhhhhccChhheEEeehhhcccceeehhhhhhcCCccCCEEEEecCccccccchhhhccccchhhhc
Confidence 1333556788999999999999999999999 998876552 46688888888776665
Q ss_pred ccccccc-----C----CCC---------------------------C---CChHhhhhhccCCceeccCCcEEEEecch
Q psy7785 271 QKNIFSQ-----N----EVS---------------------------E---SDPREVDASKYNLNYVGMDGNIGCLVNGA 311 (525)
Q Consensus 271 q~~i~~~-----~----~~~---------------------------~---~~~~E~~a~~~~l~~~~~~~rIaIitnsG 311 (525)
.-.-+-+ + +++ | ....|..+.+..|+.++..+|++....+|
T Consensus 273 ~~eka~akn~al~~ag~~vpesf~~l~~~i~~~~e~lv~~Grvvp~~Ev~pp~lp~d~saalklgllr~p~~i~t~Ia~~ 352 (600)
T KOG1254|consen 273 NGEKAAAKNQALRDAGATVPESFDALGADIQETYEFLVPFGRVVPKTEVPPPGLPEDTSAALKLGLLRKPGRIWTSIAGG 352 (600)
T ss_pred chhhhhhcchhhhhccccCccchhhhhhhhccchhcccccceecCcccCCCCCCChhhhhHhhhccccCCceEEEEecCC
Confidence 4321110 0 000 0 01233334455677777788998877777
Q ss_pred -hHHHHHHHHHHHcCCC--CCCeeeecCCCCHHH---H-HHHHHHHh-cCCCccEEEEEecccc---cChHHHHHHHHHH
Q psy7785 312 -GLAMATMDIIKLHGGE--PANFLDVGGGVNEES---I-IQAFRIIS-SDSNVKCILVNVFGGI---VNCATIAKGLVNA 380 (525)
Q Consensus 312 -G~gvlaaD~~~~~Gl~--~aNPlDl~g~a~~~~---~-~~al~~ll-~dp~vd~vlv~~~~~~---~~~~~ia~~i~~a 380 (525)
|..+..+|.....|.+ .+|.-.+++-+.... | ...++.++ -+|+-+.-+..+-+++ ....++..+|++.
T Consensus 353 rGaeviYA~~p~~~~~a~elG~gg~~Sllw~~~~lp~Ya~kfie~~~m~~aDhgp~Vsga~ntI~~~ra~kdl~sslv~g 432 (600)
T KOG1254|consen 353 RGAEVIYADVPISLGYASELGNGGVYSLLWFQRRLPQYARKFIEICTMLTADHGPAVSGAGNTIANFRAGKDLFSSLVRG 432 (600)
T ss_pred CCceeeecCchhhhhhHhhccccceEccccccccchHHHHHHHHHHhhccCCCCceeEeccCceEEeccHHHHHHHHHHH
Confidence 9999999999998884 688888888877654 3 45566655 3444444333333333 2335566677776
Q ss_pred HHh
Q psy7785 381 CKS 383 (525)
Q Consensus 381 ~~~ 383 (525)
+.+
T Consensus 433 Llt 435 (600)
T KOG1254|consen 433 LLT 435 (600)
T ss_pred Hhh
Confidence 554
No 55
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=97.98 E-value=3.6e-05 Score=83.20 Aligned_cols=99 Identities=20% Similarity=0.304 Sum_probs=74.3
Q ss_pred hCCCCCCCc--cccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDK--VCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~--~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
++|||+|++ ..+++.+++.++++.+|| |+|||+....+| + ||.+..+.+|+.+++++......
T Consensus 125 ~~gIp~p~~~~~~~~~~~e~~~~~~~~~~-P~VvKP~~g~gs--~---------Gv~iv~~~~el~~a~~~~~~~~~--- 189 (450)
T PRK06111 125 AAGVPVVPGITTNLEDAEEAIAIARQIGY-PVMLKASAGGGG--I---------GMQLVETEQELTKAFESNKKRAA--- 189 (450)
T ss_pred HCCCCCCCCcCcCcCCHHHHHHHHHHhCC-CEEEEeCCCCCC--c---------eEEEECCHHHHHHHHHHHHHHHH---
Confidence 799999986 456899999999999997 999999755443 3 88899999999999888643211
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
.. .+ -..++||+++++.+|+.+.+..|.. |.++.++
T Consensus 190 ~~--~~--~~~~lvEe~i~g~~e~~v~v~~~~~--g~~~~~~ 225 (450)
T PRK06111 190 NF--FG--NGEMYIEKYIEDPRHIEIQLLADTH--GNTVYLW 225 (450)
T ss_pred Hh--cC--CCcEEEEcccCCCcEEEEEEEEcCC--CCEEEEE
Confidence 00 01 1359999999987898898888864 4455443
No 56
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=97.96 E-value=3.9e-05 Score=83.86 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=67.6
Q ss_pred hCCCCCC-CccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcc--------cHH-HHHHHH
Q psy7785 19 VSTVHST-DKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQ--------DIP-PILEKM 88 (525)
Q Consensus 19 ~~GIpvp-~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~e--------ea~-~a~~~l 88 (525)
++|||+| ++..+++.+++.++++.+ + |||||+....+| | ||.+..+.+ ++. ++++++
T Consensus 119 ~~gIpt~~~~~~~~~~~ea~~~~~~~-~-PvVVKP~~~agg--k---------GV~iv~~~~e~~~~~~~ea~~~a~~~~ 185 (486)
T PRK05784 119 KYSIPGRLRYKVFYDVEEAAKFIEYG-G-SVAIKPARQAGG--K---------GVKVIADLQAYLSQEKREALTKSVNDI 185 (486)
T ss_pred HcCcCCCccceEeCCHHHHHHHHhhc-C-CEEEeeCCCCCC--C---------CEEEECChhHhcchhHHHHHHHHHHHH
Confidence 7999996 788899999999988765 4 999999887764 4 898888765 222 455666
Q ss_pred hccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 89 IGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 89 ~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
+.... . .|.....|+|||++. |.|+.+.+..|..
T Consensus 186 ~~~~~---~---~g~~~~~VlIEEfL~-G~E~SV~al~dG~ 219 (486)
T PRK05784 186 KEGSA---Y---YKDVEPKILVEEKVD-GVEYTLQVLTDGE 219 (486)
T ss_pred HHhHh---h---ccCCCCeEEEEEccC-CeEEEEEEEECCC
Confidence 53211 0 122246799999998 6899999998864
No 57
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=97.96 E-value=3.6e-05 Score=77.47 Aligned_cols=88 Identities=15% Similarity=0.188 Sum_probs=70.4
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
+.|+||.+|..++|.+|..++++.+|| |||+|+-...+|+|. .+..+++++.++++.-.....
T Consensus 124 eLglpTs~Y~fa~s~~e~~~a~~~iGf-PcvvKPvMSSSGkGq-----------svv~~~e~ve~AW~~A~~g~R----- 186 (394)
T COG0027 124 ELGLPTSKYRFADSLEELRAAVEKIGF-PCVVKPVMSSSGKGQ-----------SVVRSPEDVEKAWEYAQQGGR----- 186 (394)
T ss_pred HhCCCCccccccccHHHHHHHHHHcCC-CeecccccccCCCCc-----------eeecCHHHHHHHHHHHHhcCC-----
Confidence 799999999999999999999999998 999999766554333 366789999999888764321
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEc
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQD 127 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D 127 (525)
|. -..|+||++++...|+.+-..+.
T Consensus 187 ---~~-~~RVIVE~fv~fd~EiTlLtvr~ 211 (394)
T COG0027 187 ---GG-SGRVIVEEFVKFDFEITLLTVRA 211 (394)
T ss_pred ---CC-CCcEEEEEEecceEEEEEEEEEE
Confidence 22 36799999999888887766553
No 58
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=97.95 E-value=0.00016 Score=86.09 Aligned_cols=98 Identities=18% Similarity=0.249 Sum_probs=74.6
Q ss_pred hCCCCCCCcc--ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDKV--CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~--~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
++|||+|++. .+.+.+++.++++++|| ||+||+-.-.| |+ |+.+..+.+|+.+++++.......
T Consensus 125 ~~GVPvpp~t~~~v~~~eea~~~ae~iGy-PvIVKP~~GGG--Gr---------G~riV~~~eEL~~a~~~a~~ea~~-- 190 (1143)
T TIGR01235 125 KAGVPVVPGTDGPPETMEEVLDFAAAIGY-PVIIKASWGGG--GR---------GMRVVRSEADVADAFQRAKSEAKA-- 190 (1143)
T ss_pred HcCCCCCCCcccCcCCHHHHHHHHHHcCC-CEEEEECCCCC--CC---------ccEEeCCHHHHHHHHHHHHHHHHH--
Confidence 7999999875 56899999999999997 99999953323 33 788888999999998887543210
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEe
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVII 137 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~ 137 (525)
. .| ...++||++++..+|+.+.+..|.. |.++.+
T Consensus 191 ~---fg--~~~vlIEefI~g~reIeVqVlgD~~--G~vv~l 224 (1143)
T TIGR01235 191 A---FG--NDEVYVEKLIERPRHIEVQLLGDKH--GNVVHL 224 (1143)
T ss_pred h---cC--CCcEEEEEcCCCCeEEEEEEEEeCC--CCEEEE
Confidence 0 12 2469999999888999999999964 455543
No 59
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=97.94 E-value=0.00017 Score=74.82 Aligned_cols=130 Identities=18% Similarity=0.164 Sum_probs=90.3
Q ss_pred cHHhhhhhCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcc
Q psy7785 12 FSYLVKPVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGH 91 (525)
Q Consensus 12 ~e~~~k~~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~ 91 (525)
.|.+-.+..|||||++..+++.+|+..+++++|+ |.|||.--. |=.|| |..+..+.+++...+.....
T Consensus 102 ~eK~~l~~~Gi~va~~~~v~~~~el~~~~~~~g~-p~VlKtr~g-GYDGk---------GQ~~i~~~~~~~~~~~~~~~- 169 (375)
T COG0026 102 VEKQFLDKAGLPVAPFQVVDSAEELDAAAADLGF-PAVLKTRRG-GYDGK---------GQWRIRSDADLELRAAGLAE- 169 (375)
T ss_pred HHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcCC-ceEEEeccc-cccCC---------CeEEeeCcccchhhHhhhhc-
Confidence 3433344899999999999999999999999996 999998422 11244 55666666666654444321
Q ss_pred ccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEEEecCCCCCCCHH-
Q psy7785 92 KLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGITES- 170 (525)
Q Consensus 92 ~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~~l~p~~~l~~~- 170 (525)
+ ...++|+|++..+|+++-+.|+.. |-+..+=. +|++.+ +-++...+.|. .++..
T Consensus 170 ----------~---~~~vlE~fV~F~~EiSvi~aR~~~--G~~~~yP~-----~eN~h~---~gIl~~siaPa-~i~~~~ 225 (375)
T COG0026 170 ----------G---GVPVLEEFVPFEREISVIVARSND--GEVAFYPV-----AENVHR---NGILRTSIAPA-RIPDDL 225 (375)
T ss_pred ----------c---CceeEEeecccceEEEEEEEEcCC--CCEEEecc-----cceeee---cCEEEEEEecC-cCCHHH
Confidence 1 122899999999999999999875 55666653 677765 56777777774 35543
Q ss_pred --HHHHHHH
Q psy7785 171 --LAQDIAD 177 (525)
Q Consensus 171 --~a~~~~~ 177 (525)
.|++|+.
T Consensus 226 ~~~A~~~a~ 234 (375)
T COG0026 226 QAQAEEMAK 234 (375)
T ss_pred HHHHHHHHH
Confidence 4455544
No 60
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=97.91 E-value=0.00018 Score=78.75 Aligned_cols=99 Identities=17% Similarity=0.240 Sum_probs=72.5
Q ss_pred hCCCCCCCcccc---CCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccc
Q psy7785 19 VSTVHSTDKVCL---EDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT 95 (525)
Q Consensus 19 ~~GIpvp~~~~~---~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~ 95 (525)
++|||+|++... .+.+++.++++++|| ||++|+..-.| |+ ||.+..+.+|++++++........
T Consensus 124 ~~gIpvpp~~~~~~~~~~~~~~~~~~~igy-PvvvKP~~ggG--g~---------Gv~iv~~~~eL~~a~~~~~~~a~~- 190 (478)
T PRK08463 124 KNGIPIVPGTEKLNSESMEEIKIFARKIGY-PVILKASGGGG--GR---------GIRVVHKEEDLENAFESCKREALA- 190 (478)
T ss_pred HcCCCCCCCccccCCCCHHHHHHHHHHhCC-CEEEEeCCCCC--CC---------ceEEeCCHHHHHHHHHHHHHHHHH-
Confidence 799999885432 578999999999997 99999964433 34 788889999999888765322110
Q ss_pred ccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 96 KQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 96 ~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
. .+ -..++||+|+++++|+.+.+..|.. |.++.++
T Consensus 191 -~---~~--~~~vlvEefI~~~~~iev~v~~d~~--g~v~~~~ 225 (478)
T PRK08463 191 -Y---FN--NDEVFMEKYVVNPRHIEFQILGDNY--GNIIHLC 225 (478)
T ss_pred -h---cC--CCcEEEEecCCCCeEEEEEEEEcCC--CCEEEEe
Confidence 0 11 2469999999888888888888863 5666555
No 61
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=97.90 E-value=3.6e-05 Score=74.62 Aligned_cols=85 Identities=19% Similarity=0.299 Sum_probs=62.2
Q ss_pred hCCCCCCCccccCCHHHH----HHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccc
Q psy7785 19 VSTVHSTDKVCLEDARTA----TNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLI 94 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea----~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~ 94 (525)
.+|||||++.+++..+.. ......++| |++||+-.. |. + =||....+.+++.+++++.+. .
T Consensus 4 ~~gI~tp~~~~~~~~~~~~~~~~~~~~~l~~-P~~VKP~~~----Gs-----S--~Gi~~v~~~~el~~ai~~~~~--~- 68 (203)
T PF07478_consen 4 SAGIPTPPYVVVKKNEDDSDSIEKILEDLGF-PLFVKPASE----GS-----S--IGISKVHNEEELEEAIEKAFK--Y- 68 (203)
T ss_dssp HTT-BB-SEEEEETTSHHHHHHHHHHHHHSS-SEEEEESST----ST-----T--TTEEEESSHHHHHHHHHHHTT--T-
T ss_pred hcCCCCCCEEEEecccccchhHHHHHhhcCC-CEEEEECCC----Cc-----c--EEEEEcCCHHHHHHHHHHHhh--h-
Confidence 589999999999876553 345788997 999999633 12 1 268888899999999888742 1
Q ss_pred cccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 95 TKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 95 ~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
-..+||||+++ |+|+.+|+..+..
T Consensus 69 ----------~~~vlVEefI~-G~E~tv~vl~~~~ 92 (203)
T PF07478_consen 69 ----------DDDVLVEEFIS-GREFTVGVLGNGE 92 (203)
T ss_dssp ----------HSEEEEEE--S-SEEEEEEEEESSS
T ss_pred ----------cceEEEEeeec-ccceEEEEEecCC
Confidence 25799999994 9999999998644
No 62
>PRK14016 cyanophycin synthetase; Provisional
Probab=97.90 E-value=4.1e-05 Score=87.71 Aligned_cols=81 Identities=15% Similarity=0.223 Sum_probs=65.9
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEe-CCcccHHHHHHHHhcccccccc
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFT-NNVQDIPPILEKMIGHKLITKQ 97 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~-~~~eea~~a~~~l~~~~~~~~~ 97 (525)
++|||+|++..+++.+++.++++++|| |||+|+..- +.|+ ||.++ .+.+++.++++.+...
T Consensus 224 ~~GIPvP~~~~v~s~~~a~~~a~~iG~-PvVVKP~~G--~~G~---------GV~~~v~~~~el~~a~~~a~~~------ 285 (727)
T PRK14016 224 AAGVPVPEGRVVTSAEDAWEAAEEIGY-PVVVKPLDG--NHGR---------GVTVNITTREEIEAAYAVASKE------ 285 (727)
T ss_pred HCCcCCCCeeEeCCHHHHHHHHHHcCC-CEEEEECCC--CCCC---------ceEEecCCHHHHHHHHHHHHHh------
Confidence 799999999999999999999999997 999998632 2233 88885 5888999888876421
Q ss_pred CCCCCcccCeEEEEeeeCCceeEEEEEE
Q psy7785 98 TPKTGINVNKVMVAKSVNITRETYFCIV 125 (525)
Q Consensus 98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~ 125 (525)
...++||+|++ +.|+.+.+.
T Consensus 286 -------~~~viVEe~I~-G~d~Rv~Vv 305 (727)
T PRK14016 286 -------SSDVIVERYIP-GKDHRLLVV 305 (727)
T ss_pred -------CCeEEEEEecC-CceEEEEEE
Confidence 14699999998 788888765
No 63
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=97.86 E-value=8e-05 Score=80.43 Aligned_cols=86 Identities=16% Similarity=0.155 Sum_probs=62.9
Q ss_pred hCCCCCC-CccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCC----cccHHHHHHHHhcccc
Q psy7785 19 VSTVHST-DKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNN----VQDIPPILEKMIGHKL 93 (525)
Q Consensus 19 ~~GIpvp-~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~----~eea~~a~~~l~~~~~ 93 (525)
++|||+| .+..+.+.+|+..++.+++| |||||+....+| | ||.+..+ .+++...+.++...
T Consensus 115 ~~gIptp~~~~~~~~~~e~~~~~~~~~~-PvVVKP~~~sgg--k---------GV~v~~~~~~~~~ea~~~~~~~~~~-- 180 (435)
T PRK06395 115 RHNIPGNINFNACFSEKDAARDYITSMK-DVAVKPIGLTGG--K---------GVKVTGEQLNSVDEAIRYAIEILDR-- 180 (435)
T ss_pred HCCcCCCcccceeCChHHHHHHHHhhCC-CEEEEeCCCCCC--C---------CeEEecCchhhHHHHHHHHHHHhCC--
Confidence 7999997 55577777888888888887 999999877765 3 7877742 34444444443211
Q ss_pred ccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCC
Q psy7785 94 ITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLH 130 (525)
Q Consensus 94 ~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f 130 (525)
...++||||+. |.|+.+-+..|...
T Consensus 181 -----------~~~viIEEfl~-G~E~Svd~~~dg~~ 205 (435)
T PRK06395 181 -----------DGVVLIEKKMT-GEEFSLQAFSDGKH 205 (435)
T ss_pred -----------CCcEEEEeecC-CceEEEEEEEcCCe
Confidence 24599999997 67999999998654
No 64
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=97.86 E-value=5e-05 Score=88.63 Aligned_cols=81 Identities=21% Similarity=0.265 Sum_probs=66.4
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEe-CCcccHHHHHHHHhcccccccc
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFT-NNVQDIPPILEKMIGHKLITKQ 97 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~-~~~eea~~a~~~l~~~~~~~~~ 97 (525)
.+|||+|++.++++.+++.++++++|| |+|+|+..-.. |+ ||.++ .+.+++.++++.+...
T Consensus 223 ~~GIpvP~~~~~~s~~ea~~~~~~ig~-PvVVKP~~g~~--G~---------GV~l~v~s~~el~~a~~~a~~~------ 284 (864)
T TIGR02068 223 DAGVPVPEGTVVQSAEDAWEAAQDLGY-PVVIKPYDGNH--GR---------GVTINILTRDEIESAYEAAVEE------ 284 (864)
T ss_pred HcCcCCCCEEEECCHHHHHHHHHHcCC-CEEEEECCCCC--cc---------CEEEEeCCHHHHHHHHHHHHhh------
Confidence 799999999999999999999999997 99999974322 33 78885 5889999888876421
Q ss_pred CCCCCcccCeEEEEeeeCCceeEEEEEE
Q psy7785 98 TPKTGINVNKVMVAKSVNITRETYFCIV 125 (525)
Q Consensus 98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~ 125 (525)
...++||+|++ +.|+.+.+.
T Consensus 285 -------~~~vlVEefI~-G~e~rvlVv 304 (864)
T TIGR02068 285 -------SSGVIVERFIT-GRDHRLLVV 304 (864)
T ss_pred -------CCcEEEEEecc-CCEEEEEEE
Confidence 24699999997 689988775
No 65
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=97.83 E-value=6.9e-05 Score=89.50 Aligned_cols=88 Identities=8% Similarity=0.145 Sum_probs=73.0
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
+.|||+|++..+++.+|+.++++++|| |||+|+....+| + ||.+..|.+|+.+++++......
T Consensus 679 ~~GIp~P~~~~~~s~ee~~~~~~~igy-PvvVKP~~~~Gg--~---------Gv~iv~~~eeL~~~~~~a~~~s~----- 741 (1066)
T PRK05294 679 KLGIPQPPNGTATSVEEALEVAEEIGY-PVLVRPSYVLGG--R---------AMEIVYDEEELERYMREAVKVSP----- 741 (1066)
T ss_pred HcCcCCCCeEEECCHHHHHHHHHhcCC-CeEEEeCCCCCC--C---------cEEEECCHHHHHHHHHHHHhhCC-----
Confidence 799999999999999999999999997 999999654443 2 78888899999998888754211
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
...++||+++++..|+.+.+.+|..
T Consensus 742 ------~~~vlIEefI~G~~E~sV~~v~dg~ 766 (1066)
T PRK05294 742 ------DHPVLIDKFLEGAIEVDVDAICDGE 766 (1066)
T ss_pred ------CCcEEEEecCCCCEEEEEEEEecCC
Confidence 2459999999876799999998865
No 66
>PLN02522 ATP citrate (pro-S)-lyase
Probab=97.79 E-value=0.00025 Score=78.85 Aligned_cols=124 Identities=16% Similarity=0.218 Sum_probs=93.0
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHH
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEE-SIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVN 379 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~-~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~ 379 (525)
.|+||+||-||+++..++|.+...|+-..-.+-+++++... .+.++++.+.+||++++|++..--+..+..+.++.+.+
T Consensus 167 pG~VgiVSqSGtL~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~Tk~IvlygEiGg~~e~~f~ea~~~ 246 (608)
T PLN02522 167 PGSVGFVSKSGGMSNEMYNVIARVTDGIYEGIAIGGDVFPGSTLSDHVLRFNNIPQIKMIVVLGELGGRDEYSLVEALKQ 246 (608)
T ss_pred CCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEecCchhHHHHHHHHHH
Confidence 57899999999999999999999999777778888877632 38899999999999999998654344444555554433
Q ss_pred HHHhcCCCCcEEEEeCCcch-----------------------HHHHHHHhhCCCCccccCCHHHHHHHHHHhh
Q psy7785 380 ACKSFKLSIPLVVRLEGTNV-----------------------QEGKRILDESKLPLIFASDLDEAASLVNACK 430 (525)
Q Consensus 380 a~~~~~~~kPivv~~~g~~~-----------------------~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~ 430 (525)
+ ..+|||++...|... ..-...|+++|+.+. +++++-...+.+..
T Consensus 247 a----~~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv~vv--~s~~El~~~~~~~~ 314 (608)
T PLN02522 247 G----KVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGAIVP--TSFEALEAAIKETF 314 (608)
T ss_pred h----cCCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCCCeEe--CCHHHHHHHHHHHH
Confidence 2 247999986544211 123558899999988 88888777776543
No 67
>PRK12999 pyruvate carboxylase; Reviewed
Probab=97.78 E-value=0.0003 Score=84.15 Aligned_cols=99 Identities=19% Similarity=0.279 Sum_probs=74.9
Q ss_pred hCCCCCCCcc--ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDKV--CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~--~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
++|||+|++. .+.+.+|+.++++++|| ||++|+-.-.+| + ||++..+.+|+.+++++.......
T Consensus 129 ~~GVPv~P~~~~~v~s~eea~~~a~~iGy-PvVVKP~~GgGG--r---------Gv~vV~~~eEL~~a~~~a~~ea~~-- 194 (1146)
T PRK12999 129 KAGVPVIPGSEGPIDDIEEALEFAEEIGY-PIMLKASAGGGG--R---------GMRIVRSEEELEEAFERAKREAKA-- 194 (1146)
T ss_pred HCCCCCCCCcccCCCCHHHHHHHHHHhCC-CEEEEECCCCCC--C---------CeEEeCCHHHHHHHHHHHHHHHHh--
Confidence 7999998766 47999999999999997 999999543332 3 788889999999988886543210
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
. .| ...++||+++++.+|+.+.+..|.. |-++.+.
T Consensus 195 ~---fg--~~~vlVEefI~g~~~ieVqvl~D~~--G~vv~l~ 229 (1146)
T PRK12999 195 A---FG--NDEVYLEKYVENPRHIEVQILGDKH--GNVVHLY 229 (1146)
T ss_pred h---cC--CCcEEEecCCCCCeEEEEEEEEECC--CCEEEEE
Confidence 0 11 2469999999988888898888864 4555554
No 68
>PRK07206 hypothetical protein; Provisional
Probab=97.73 E-value=0.00016 Score=77.43 Aligned_cols=90 Identities=19% Similarity=0.214 Sum_probs=70.4
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCC--cEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFK--EYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~--PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
+.|||+|++..+++.+++.++++++||. |||||+....++ -||.+..|.+|++++++++.+..-
T Consensus 118 ~~gi~~p~~~~~~~~~e~~~~~~~~g~~~~P~VvKP~~g~gs-----------~gv~~v~~~~el~~~~~~~~~~~~--- 183 (416)
T PRK07206 118 EAGLPAARQINTADWEEAEAWLRENGLIDRPVVIKPLESAGS-----------DGVFICPAKGDWKHAFNAILGKAN--- 183 (416)
T ss_pred HcCCCcccEEecCCHHHHHHHHHhcCCCCCCEEEeCCCCCCC-----------CCEEEeCCHHHHHHHHHHHHhccc---
Confidence 7999999999999999999999998742 999999544332 289999999999999999865311
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEEEE
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCIVQ 126 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~ 126 (525)
. .+.....++|||+++ |.|+.+.+..
T Consensus 184 ~---~~~~~~~~lvEe~i~-G~E~sv~~~~ 209 (416)
T PRK07206 184 K---LGLVNETVLVQEYLI-GTEYVVNFVS 209 (416)
T ss_pred c---CCCCCCeEEEEEccc-cEEEEEEEEE
Confidence 1 122235799999998 6899887765
No 69
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=97.73 E-value=8.5e-05 Score=77.38 Aligned_cols=83 Identities=17% Similarity=0.245 Sum_probs=65.0
Q ss_pred hCCCCCCCccccCCHHH----HHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccc
Q psy7785 19 VSTVHSTDKVCLEDART----ATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLI 94 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~ee----a~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~ 94 (525)
.+|||+|++..+.+.++ ...+.+.+|| |+|+|+....++ -||.+..+.+++.+++++.+..
T Consensus 133 ~~GIp~p~~~~~~~~~~~~~~~~~~~~~~~~-P~vVKP~~~gsS-----------~Gv~~v~~~~el~~a~~~~~~~--- 197 (333)
T PRK01966 133 AAGIPVAPYVVLTRGDWEEASLAEIEAKLGL-PVFVKPANLGSS-----------VGISKVKNEEELAAALDLAFEY--- 197 (333)
T ss_pred HcCCCCCCEEEEeccccchhhHHHHHHhcCC-CEEEEeCCCCCc-----------cCEEEECCHHHHHHHHHHHHhc---
Confidence 79999999998876654 2456778997 999999543221 2788888999999998887431
Q ss_pred cccCCCCCcccCeEEEEeeeCCceeEEEEEEEc
Q psy7785 95 TKQTPKTGINVNKVMVAKSVNITRETYFCIVQD 127 (525)
Q Consensus 95 ~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D 127 (525)
-..++||++++ |+|+.+++..|
T Consensus 198 ----------~~~vlvEefI~-G~E~~v~vl~~ 219 (333)
T PRK01966 198 ----------DRKVLVEQGIK-GREIECAVLGN 219 (333)
T ss_pred ----------CCcEEEEcCcC-CEEEEEEEECC
Confidence 14699999998 69999999976
No 70
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=97.72 E-value=0.00044 Score=71.21 Aligned_cols=123 Identities=13% Similarity=0.198 Sum_probs=89.7
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHH
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEE-SIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVN 379 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~-~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~ 379 (525)
.|+||+||-||+++..+++.+...|+-..-.+-+++++... .+.++|+.+.+||++++|++..-.+... +.-+..+++
T Consensus 169 ~G~VgiVSqSGtl~~ei~~~~~~~GlG~S~~VsiGnd~~~g~~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~-e~~aa~fi~ 247 (317)
T PTZ00187 169 KGKIGIVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFIDCLKLFLNDPETEGIILIGEIGGTA-EEEAAEWIK 247 (317)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEEEEeCCCCCCCCCHHHHHHHHhhCCCccEEEEEEecCCch-hHHHHHHHH
Confidence 57899999999999999999999999888888899886332 4899999999999999999764432222 222333333
Q ss_pred HHHhcCCCCcEEEEeCCcc--------------------hHHHHHHHhhCCCCccccCCHHHHHHHHHHh
Q psy7785 380 ACKSFKLSIPLVVRLEGTN--------------------VQEGKRILDESKLPLIFASDLDEAASLVNAC 429 (525)
Q Consensus 380 a~~~~~~~kPivv~~~g~~--------------------~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l 429 (525)
.. ..+|||++...|.. ...-...|+++|+++. +++++-...+.+.
T Consensus 248 ~~---~~~KPVVa~~aGrsap~G~r~gHaGAi~~~~~G~~~~k~aal~qaGv~v~--~~~~el~~~~~~~ 312 (317)
T PTZ00187 248 NN---PIKKPVVSFIAGITAPPGRRMGHAGAIISGGKGTAPGKIEALEAAGVRVV--KSPAQLGKTMLEV 312 (317)
T ss_pred hh---cCCCcEEEEEecCCCCCCCcccchhhhhccCCCCHHHHHHHHHHCCCeEe--CCHHHHHHHHHHH
Confidence 32 14799998644421 1222457889999988 8888877777654
No 71
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=97.71 E-value=0.00013 Score=76.50 Aligned_cols=83 Identities=17% Similarity=0.132 Sum_probs=62.9
Q ss_pred hCCCCCCCccccC------CHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccc
Q psy7785 19 VSTVHSTDKVCLE------DARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHK 92 (525)
Q Consensus 19 ~~GIpvp~~~~~~------~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~ 92 (525)
.+|||||++..++ +.+++....+.++| |+|||+....+ + =||.+..+.++++.++++++..
T Consensus 140 ~~GI~~p~~~~~~~~~~~~~~~~~~~~~~~l~~-PvvVKP~~ggs--S---------~GV~~v~~~~el~~a~~~~~~~- 206 (347)
T PRK14572 140 QSGQKVAPFFELEKLKYLNSPRKTLLKLESLGF-PQFLKPVEGGS--S---------VSTYKITNAEQLMTLLALIFES- 206 (347)
T ss_pred HcCCCCCCEEEEEccccccChHHHHHHHHhcCC-CEEEecCCCCC--C---------CCEEEECCHHHHHHHHHHHHhc-
Confidence 7999999998874 34455555678997 99999953311 1 2788888999999988887521
Q ss_pred cccccCCCCCcccCeEEEEeeeCCceeEEEEEEEc
Q psy7785 93 LITKQTPKTGINVNKVMVAKSVNITRETYFCIVQD 127 (525)
Q Consensus 93 ~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D 127 (525)
-..++|||+++ ++|+.+++..+
T Consensus 207 ------------~~~vlVEefI~-G~E~sv~vi~~ 228 (347)
T PRK14572 207 ------------DSKVMSQSFLS-GTEVSCGVLER 228 (347)
T ss_pred ------------CCCEEEEcCcc-cEEEEEEEEeC
Confidence 13589999997 69999999864
No 72
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=97.69 E-value=0.00022 Score=73.06 Aligned_cols=85 Identities=12% Similarity=0.175 Sum_probs=64.2
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhc-CCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDL-NFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ 97 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~l-g~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~ 97 (525)
..|||+|++.++.+++++.++++++ +| |+|+|+-.-.+ |+ ||.+..+.+++....+.+...
T Consensus 109 ~~gip~P~t~~~~~~~~~~~~~~~~~~~-P~VvKP~~g~~--g~---------GV~~v~~~~~~~~~~~~~~~~------ 170 (300)
T PRK10446 109 RQGIDLPVTGIAHSPDDTSDLIDMVGGA-PLVVKLVEGTQ--GI---------GVVLAETRQAAESVIDAFRGL------ 170 (300)
T ss_pred HcCCCCCCEEEeCCHHHHHHHHHHhCCC-CEEEEECCCCC--cc---------cEEEEcCHHHHHHHHHHHHhc------
Confidence 7999999999999999998888888 65 99999954332 23 788887877776666554211
Q ss_pred CCCCCcccCeEEEEeeeC--CceeEEEEEEEcC
Q psy7785 98 TPKTGINVNKVMVAKSVN--ITRETYFCIVQDR 128 (525)
Q Consensus 98 ~~~~g~~~~~vlVee~~~--~~~E~~vgv~~D~ 128 (525)
-..++||||++ .+.|+.+.+.-+.
T Consensus 171 -------~~~~lvQe~I~~~~g~d~rv~vig~~ 196 (300)
T PRK10446 171 -------NAHILVQEYIKEAQGCDIRCLVVGDE 196 (300)
T ss_pred -------CCCEEEEeeeccCCCceEEEEEECCE
Confidence 13589999996 5799999987543
No 73
>PRK02186 argininosuccinate lyase; Provisional
Probab=97.68 E-value=0.00019 Score=84.22 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=70.0
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||+|++..+++.+++.++++.++| |||||+..-.++ + ||.+..|.+|+.++++++...
T Consensus 117 ~~GIp~P~~~~v~~~~e~~~~~~~~~~-PvVVKP~~g~gS--~---------GV~~v~~~~el~~a~~~~~~~------- 177 (887)
T PRK02186 117 DHGIDVPRTHALALRAVALDALDGLTY-PVVVKPRMGSGS--V---------GVRLCASVAEAAAHCAALRRA------- 177 (887)
T ss_pred HcCCCCCCEEEeCCHHHHHHHHHhCCC-CEEEEeCCCCCC--C---------CeEEECCHHHHHHHHHHHHhc-------
Confidence 799999999999999999999999997 999999544332 2 788999999999998887532
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcC
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDR 128 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~ 128 (525)
+ ...++||||++ |.|+.+.+..+.
T Consensus 178 ---~--~~~~lvEEfI~-G~E~sVe~i~~~ 201 (887)
T PRK02186 178 ---G--TRAALVQAYVE-GDEYSVETLTVA 201 (887)
T ss_pred ---C--CCcEEEeeccc-CCcEEEEEEEEC
Confidence 1 24699999998 589999887764
No 74
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=97.64 E-value=0.00012 Score=70.11 Aligned_cols=83 Identities=18% Similarity=0.344 Sum_probs=46.1
Q ss_pred hhCCCCCCCccccCCHHHHHHHHHhc-CCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 18 PVSTVHSTDKVCLEDARTATNILKDL-NFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 18 ~~~GIpvp~~~~~~~~eea~~~a~~l-g~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
.++|||+|++.++.+++++..+.+++ ++ |+|+|+.. ++.|+ ||.+..+.+++....+.....
T Consensus 12 ~~~gipvP~t~~~~~~~~~~~~~~~~~~~-p~ViKp~~--g~~G~---------gV~~i~~~~~~~~~l~~~~~~----- 74 (190)
T PF08443_consen 12 AKAGIPVPETRVTNSPEEAKEFIEELGGF-PVVIKPLR--GSSGR---------GVFLINSPDELESLLDAFKRL----- 74 (190)
T ss_dssp HHTT-----EEEESSHHHHHHHHHHH--S-SEEEE-SB------------------EEEESHCHHHHHHH----------
T ss_pred HHCCcCCCCEEEECCHHHHHHHHHHhcCC-CEEEeeCC--CCCCC---------EEEEecCHHHHHHHHHHHHhc-----
Confidence 37999999999999999999999999 76 99999953 33344 788877888887665554211
Q ss_pred cCCCCCcccCeEEEEeeeCCc--eeEEEEEE
Q psy7785 97 QTPKTGINVNKVMVAKSVNIT--RETYFCIV 125 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~--~E~~vgv~ 125 (525)
-..+++|+|++.. +++.+-+.
T Consensus 75 --------~~~~~~Q~fI~~~~g~d~Rv~Vi 97 (190)
T PF08443_consen 75 --------ENPILVQEFIPKDGGRDLRVYVI 97 (190)
T ss_dssp --------TTT-EEEE----SS---EEEEEE
T ss_pred --------cCcceEeccccCCCCcEEEEEEE
Confidence 1346999999754 46766665
No 75
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=97.62 E-value=0.00036 Score=73.29 Aligned_cols=89 Identities=15% Similarity=0.262 Sum_probs=66.9
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||+|++ ++++++ ++| |||||+....+ || ||.+..|.+|+.+++++++.+..
T Consensus 133 ~aGIp~p~~--~~~~~~-------i~~-PvIVKp~~g~g--gk---------Gv~i~~s~~El~~~~~~l~~~~~----- 186 (358)
T PRK13278 133 EAGIRIPRK--YESPED-------IDR-PVIVKLPGAKG--GR---------GYFIAKSPEEFKEKIDKLIERGL----- 186 (358)
T ss_pred HcCCCCCCE--eCCHHH-------cCC-CEEEEeCCCCC--CC---------CeEEeCCHHHHHHHHHHHHhccc-----
Confidence 899999985 566554 566 99999964443 34 89999999999999999875422
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
.+. ...++||||+. |.|+++-+...|.. |=+-++|
T Consensus 187 --~~~-~~~~iIEEfI~-G~e~sv~~f~s~~~-~~~e~l~ 221 (358)
T PRK13278 187 --ITE-VEEAIIQEYVV-GVPYYFHYFYSPIK-NRLELLG 221 (358)
T ss_pred --cCC-CCeEEEEecCC-CcEEEEEEEEeccC-CeEEEEe
Confidence 122 47899999997 78999999887643 4455656
No 76
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=97.60 E-value=0.00023 Score=80.80 Aligned_cols=83 Identities=16% Similarity=0.184 Sum_probs=62.9
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhc-CCCcEEEEEeeccccCCCCCccCCCcceEEEeC---CcccHHHHHHHHhccccc
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDL-NFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTN---NVQDIPPILEKMIGHKLI 94 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~l-g~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~---~~eea~~a~~~l~~~~~~ 94 (525)
..|||||++.++++.+++.++...+ |+ |||||+..... |+ ||.+.. +.+++.++++..+..
T Consensus 485 ~aGIPVP~g~~~~~~~~a~~~~~~~~g~-PVVVKP~~g~~--G~---------GVsi~~~~~~~eel~~Al~~A~~~--- 549 (737)
T TIGR01435 485 EAGFRVPFGDEFSSQALALEAFSLFENK-AIVVKPKSTNY--GL---------GITIFKNGFTLEDFQEALNIAFSE--- 549 (737)
T ss_pred HcCcCCCCEEEECCHHHHHHHHHHhcCC-CEEEeeCCCCC--cC---------CeEEecCcCCHHHHHHHHHHHHhc---
Confidence 7999999999999998888888888 55 99999964432 33 777754 367777777654321
Q ss_pred cccCCCCCcccCeEEEEeeeCCceeEEEEEEEc
Q psy7785 95 TKQTPKTGINVNKVMVAKSVNITRETYFCIVQD 127 (525)
Q Consensus 95 ~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D 127 (525)
-+.|+||++++ |.|+.+.|.-+
T Consensus 550 ----------~~~VLVEefI~-G~EyRv~VIg~ 571 (737)
T TIGR01435 550 ----------DSSVIIEEFLP-GTEYRFFVLND 571 (737)
T ss_pred ----------CCeEEEEeccc-CCEEEEEEECC
Confidence 24699999998 79999988744
No 77
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=97.60 E-value=0.0009 Score=68.20 Aligned_cols=121 Identities=17% Similarity=0.246 Sum_probs=83.0
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHH
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEE-SIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVN 379 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~-~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~ 379 (525)
.|+|++||-||+.+...+|.+...|+-..-.+-+++++..+ .+.+.++.+.+||++++|++..-+......+.++.+
T Consensus 143 ~G~ValiSQSG~l~~~~~~~a~~~giG~S~~Vs~Gn~a~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~~~~~~-- 220 (286)
T TIGR01019 143 PGNVGIVSRSGTLTYEAVHQLTKAGFGQSTCVGIGGDPVNGTSFIDVLEAFEKDPETEAIVMIGEIGGSAEEEAADFI-- 220 (286)
T ss_pred CCcEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCchHHHHHHHH--
Confidence 57899999999999999999999999777777777775422 388999999999999999976543211112222221
Q ss_pred HHHhcCCCCcEEEEeCCcch-------------------HH-HHHHHhhCCCCccccCCHHHHHHHHHH
Q psy7785 380 ACKSFKLSIPLVVRLEGTNV-------------------QE-GKRILDESKLPLIFASDLDEAASLVNA 428 (525)
Q Consensus 380 a~~~~~~~kPivv~~~g~~~-------------------~~-~~~~L~~~Gvpvf~~~s~~~Av~Al~~ 428 (525)
... .+|||++...|... .+ ....|++.|+... +++++-+..+.+
T Consensus 221 -~~~--~~KPVV~lk~Grs~~~g~~~sHTGala~~~~g~~~~~~aa~rqaGvi~v--~~~~el~d~l~~ 284 (286)
T TIGR01019 221 -KQN--MSKPVVGFIAGATAPPGKRMGHAGAIISGGKGTAESKIEALEAAGVTVV--KSPSDIGELLAE 284 (286)
T ss_pred -Hhc--CCCCEEEEEecCCCCccccccchhhhhcCCCCCHHHHHHHHHHCCCeEe--CCHHHHHHHHHH
Confidence 111 47999986555311 11 1346777788766 777776666543
No 78
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=97.60 E-value=0.00033 Score=70.69 Aligned_cols=86 Identities=17% Similarity=0.206 Sum_probs=62.3
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||+|++..+.+.+++..+...+|| |+|+|+..-.+| + ||.+..+.+++.++++.... +
T Consensus 97 ~~gip~P~t~~~~~~~~~~~~~~~~~~-P~vvKP~~g~~g--~---------gv~~v~~~~~l~~~~~~~~~--~----- 157 (280)
T TIGR02144 97 KAGVPTPRTYLAFDREAALKLAEALGY-PVVLKPVIGSWG--R---------LVALIRDKDELESLLEHKEV--L----- 157 (280)
T ss_pred HCCcCCCCeEeeCCHHHHHHHHHHcCC-CEEEEECcCCCc--C---------CEEEECCHHHHHHHHHHHHh--h-----
Confidence 699999999999999999999889997 999999644332 3 68777787777765543211 1
Q ss_pred CCCCcccCeEEEEeeeCC-ceeEEEEEE
Q psy7785 99 PKTGINVNKVMVAKSVNI-TRETYFCIV 125 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~-~~E~~vgv~ 125 (525)
.+.....++||+++++ +.|+.+.+.
T Consensus 158 --~~~~~~~~ivQefI~~~~~d~~v~vi 183 (280)
T TIGR02144 158 --GGSQHKLFYIQEYINKPGRDIRVFVI 183 (280)
T ss_pred --cCCcCCeEEEEcccCCCCCceEEEEE
Confidence 0101246899999974 678777765
No 79
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=97.56 E-value=0.00033 Score=72.28 Aligned_cols=81 Identities=14% Similarity=0.187 Sum_probs=64.0
Q ss_pred hCCCCCCCccccCCHHHHHH--HHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDKVCLEDARTATN--ILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~--~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
++|||+|++..+++.+++.. ..++++| |+|+|+..-.+ ++ ||.+..|.+++.+++.+.
T Consensus 121 ~~gip~p~~~~~~~~~~~~~~~~~~~~~~-P~viKP~~g~~--s~---------gv~~v~~~~el~~~~~~~-------- 180 (326)
T PRK12767 121 ENGIPTPKSYLPESLEDFKAALAKGELQF-PLFVKPRDGSA--SI---------GVFKVNDKEELEFLLEYV-------- 180 (326)
T ss_pred HcCCCCCCEEcccCHHHHHhhhhcccCCC-CEEEEeCCCCC--cc---------CeEEeCCHHHHHHHHHhC--------
Confidence 79999999999999999887 5678897 99999953322 22 788888888877665432
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
..++||++++ +.|+.+.+..|..
T Consensus 181 ---------~~~lvqeyi~-G~e~~v~~~~~~~ 203 (326)
T PRK12767 181 ---------PNLIIQEFIE-GQEYTVDVLCDLN 203 (326)
T ss_pred ---------CCeEEEeccC-CceEEEEEEEcCC
Confidence 2689999995 7999999998843
No 80
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=97.56 E-value=0.00024 Score=81.46 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=62.7
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhc-CCCcEEEEEeeccccCCCCCccCCCcceEEEe---CCcccHHHHHHHHhccccc
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDL-NFKEYVIKAQILAGGRGLGHFDNGFKSGVHFT---NNVQDIPPILEKMIGHKLI 94 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~l-g~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~---~~~eea~~a~~~l~~~~~~ 94 (525)
++|||||++.++.+.+++..+++++ || |||||+....+| + ||.+. .+.+++.++++..+..
T Consensus 498 ~~GIpvP~~~~~~~~e~a~~~~~~~~g~-PvVVKP~~g~~G--~---------GV~~~~~~~~~eel~~A~~~a~~~--- 562 (752)
T PRK02471 498 EAGFPVPAGDEFTSLEEALADYSLFADK-AIVVKPKSTNFG--L---------GISIFKEPASLEDYEKALEIAFRE--- 562 (752)
T ss_pred HCCcCCCCEEEEcCHHHHHHHHHHhcCC-CEEEEECCCCCc--C---------CeEEecCcCCHHHHHHHHHHHHhc---
Confidence 7999999999999999998888775 76 999999754333 3 67664 2577788887775321
Q ss_pred cccCCCCCcccCeEEEEeeeCCceeEEEEEE
Q psy7785 95 TKQTPKTGINVNKVMVAKSVNITRETYFCIV 125 (525)
Q Consensus 95 ~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~ 125 (525)
-..++|||+++ |.|+.+.+.
T Consensus 563 ----------~~~vlVEEfI~-G~E~Rv~Vi 582 (752)
T PRK02471 563 ----------DSSVLVEEFIV-GTEYRFFVL 582 (752)
T ss_pred ----------CCcEEEEeccc-CCEEEEEEE
Confidence 24599999997 799998776
No 81
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=97.56 E-value=0.00032 Score=74.06 Aligned_cols=84 Identities=15% Similarity=0.243 Sum_probs=62.8
Q ss_pred hCCCCCCCccccC------CHHHHHH-HHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcc
Q psy7785 19 VSTVHSTDKVCLE------DARTATN-ILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGH 91 (525)
Q Consensus 19 ~~GIpvp~~~~~~------~~eea~~-~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~ 91 (525)
..|||||++..++ +.+++.. +.+.+|| |++||+.... . .-||.+..+.+|+.+++++.+..
T Consensus 139 ~~GIpt~p~~~~~~~~~~~~~~~~~~~~~~~lg~-PviVKP~~~G----s-------S~Gv~~v~~~~el~~al~~a~~~ 206 (364)
T PRK14570 139 SFNIPLVPFIGFRKYDYFLDKEGIKKDIKEVLGY-PVIVKPAVLG----S-------SIGINVAYNENQIEKCIEEAFKY 206 (364)
T ss_pred HcCCCCCCEEEEeccccccchHHHHHHHHHhcCC-CEEEEeCCCC----C-------CCcEEEeCCHHHHHHHHHHHHhC
Confidence 7999999987654 3455544 4467997 9999995332 1 12788888999999999887531
Q ss_pred ccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcC
Q psy7785 92 KLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDR 128 (525)
Q Consensus 92 ~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~ 128 (525)
-..++||+++. ++|+.+++.-|.
T Consensus 207 -------------~~~vlVEefI~-GrEi~v~Vlg~~ 229 (364)
T PRK14570 207 -------------DLTVVIEKFIE-AREIECSVIGNE 229 (364)
T ss_pred -------------CCCEEEECCcC-CEEEEEEEECCC
Confidence 13599999998 799999998653
No 82
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=97.55 E-value=0.0012 Score=67.38 Aligned_cols=122 Identities=16% Similarity=0.233 Sum_probs=83.4
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHH
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEE-SIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVN 379 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~-~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~ 379 (525)
.|+|++||-||+.+...+|.+...|+-..-.+-++..+..+ .+.+.++.+.+||++++|++.+-+........++.+
T Consensus 145 ~G~valiSQSGal~~~~~~~~~~~giG~s~~Vs~Gn~~~~dv~~~D~l~~l~~Dp~T~~I~lylE~~~~~~~~a~~~~-- 222 (291)
T PRK05678 145 KGRVGVVSRSGTLTYEAVAQLTDLGFGQSTCVGIGGDPINGTNFIDVLEAFEEDPETEAIVMIGEIGGSAEEEAAEYI-- 222 (291)
T ss_pred CCCEEEEeccHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCCCCHHHHHHHHhhCCCCcEEEEEEecCCcHHHHHHHHH--
Confidence 57899999999999999999999999777777777764422 378899999999999999876543212111222221
Q ss_pred HHHhcCCCCcEEEEeCCcch--------------------HHHHHHHhhCCCCccccCCHHHHHHHHHHh
Q psy7785 380 ACKSFKLSIPLVVRLEGTNV--------------------QEGKRILDESKLPLIFASDLDEAASLVNAC 429 (525)
Q Consensus 380 a~~~~~~~kPivv~~~g~~~--------------------~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l 429 (525)
.+. .+|||++...|... ......|++.|+... +++++-...+..+
T Consensus 223 -~~~--~~KPVV~lk~Grs~~~g~~~sHTGala~~~~g~~~~~~a~~~q~Gvi~v--~~~~el~~~~~~~ 287 (291)
T PRK05678 223 -KAN--VTKPVVGYIAGVTAPPGKRMGHAGAIISGGKGTAEEKKEALEAAGVKVA--RTPSEIGELLKEV 287 (291)
T ss_pred -HHc--CCCCEEEEEecCCCCCCCcccchhhhccCCCCCHHHHHHHHHHCCCeEC--CCHHHHHHHHHHH
Confidence 111 37999986555311 011245777788766 7777777666554
No 83
>PRK06524 biotin carboxylase-like protein; Validated
Probab=97.55 E-value=0.00041 Score=75.23 Aligned_cols=84 Identities=17% Similarity=0.226 Sum_probs=65.2
Q ss_pred hCCCCCCCccc--cCCHHHHHHHHHh--cCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccc
Q psy7785 19 VSTVHSTDKVC--LEDARTATNILKD--LNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLI 94 (525)
Q Consensus 19 ~~GIpvp~~~~--~~~~eea~~~a~~--lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~ 94 (525)
..|||||++.. +.+.+++..+++. +|| |||||+-. +|-|+ ||.+..+.++++++++++..
T Consensus 152 ~aGIPtpp~~~~~~~~~eel~~~~~~~~IGy-PvVVKP~~--GGSS~---------GV~~Vkn~eELe~a~~~~~~---- 215 (493)
T PRK06524 152 EAGVPSVPHVLGRVDSYDELSALAHGAGLGD-DLVVQTPY--GDSGS---------TTFFVRGQRDWDKYAGGIVG---- 215 (493)
T ss_pred HcCCCCCCcccccCCCHHHHHHHHHhccCCC-cEEEEECC--CCCCc---------CEEEeCCHHHHHHHHHHhcC----
Confidence 79999999998 4677777777765 997 99999963 33233 78888899999888777532
Q ss_pred cccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 95 TKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 95 ~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
...++||++++ +.|+.+.+.+|..
T Consensus 216 ----------~~~viVEe~I~-GrEitVev~vd~d 239 (493)
T PRK06524 216 ----------QPEIKVMKRIR-NVEVCIEACVTRH 239 (493)
T ss_pred ----------CCCEEEEeccC-cEEEEEEEEEeCC
Confidence 13589999997 7999998888854
No 84
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=97.53 E-value=0.00023 Score=74.42 Aligned_cols=82 Identities=12% Similarity=0.144 Sum_probs=62.6
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
.+|||+|++.++++.++. ..+.++| |+|||+....+ ++ ||.+..+.+|+.+++++....
T Consensus 142 ~~GIp~p~~~~~~~~~~~--~~~~l~~-P~iVKP~~~gs--S~---------Gv~~v~~~~eL~~a~~~a~~~------- 200 (343)
T PRK14568 142 NAGIATPAFWTVTADERP--DAATLTY-PVFVKPARSGS--SF---------GVSKVNSADELDYAIESARQY------- 200 (343)
T ss_pred HcCcCcCCEEEEECCchh--hhhhcCC-CEEEEeCCCCC--CC---------CEEEeCCHHHHHHHHHHHHhc-------
Confidence 799999999998876543 2457897 99999954322 12 788888999999888776321
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcC
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDR 128 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~ 128 (525)
-..++||++++ ++|+.+++..|.
T Consensus 201 ------~~~vlVEe~I~-G~E~sv~vl~~~ 223 (343)
T PRK14568 201 ------DSKVLIEEAVV-GSEVGCAVLGNG 223 (343)
T ss_pred ------CCcEEEECCcC-CEEEEEEEEcCC
Confidence 14699999998 699999998764
No 85
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=97.52 E-value=0.0014 Score=67.18 Aligned_cols=123 Identities=14% Similarity=0.187 Sum_probs=87.6
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCC--CCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHH
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGG--VNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLV 378 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~--a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~ 378 (525)
.|+|++||-||+.+....|.+..+|+-..-.+-+++. ++. .+.++++.+.+||++++|++.+-++... ..-.+.++
T Consensus 150 ~G~ValiSQSG~l~~~l~~~~~~~giG~S~~VS~Gn~~~adv-~~~d~L~yl~~Dp~T~~I~ly~E~~G~~-~~d~~~f~ 227 (300)
T PLN00125 150 PGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGT-NFVDCLEKFVKDPQTEGIILIGEIGGTA-EEDAAAFI 227 (300)
T ss_pred CCcEEEEeCCccHHHHHHHHHHHcCCCeEEEEEeCCCCCCCC-CHHHHHHHHhhCCCCcEEEEEeccCCch-HHHHHHHH
Confidence 5789999999999999999999999877666777766 332 3889999999999999999865442111 12233444
Q ss_pred HHHHhcCCCCcEEEEeCCcch--------------------HHHHHHHhhCCCCccccCCHHHHHHHHHHhh
Q psy7785 379 NACKSFKLSIPLVVRLEGTNV--------------------QEGKRILDESKLPLIFASDLDEAASLVNACK 430 (525)
Q Consensus 379 ~a~~~~~~~kPivv~~~g~~~--------------------~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~ 430 (525)
++++ .+|||++...|... ......+++.|+... +++++-...+....
T Consensus 228 ~aa~---~~KPVV~lk~Grs~~~g~~~sHTGala~~~~G~~~~~~a~~rq~Gvi~v--~~~~el~~~~~~~~ 294 (300)
T PLN00125 228 KESG---TEKPVVAFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKALREAGVTVV--ESPAKIGVAMLEVF 294 (300)
T ss_pred HHhc---CCCCEEEEEecCCCCCCCCccchhhhhcCCCCCHHHHHHHHHHCCCeEe--CCHHHHHHHHHHHH
Confidence 5444 37999986544211 112447788888877 88888777776543
No 86
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=97.52 E-value=0.00052 Score=68.74 Aligned_cols=84 Identities=14% Similarity=0.149 Sum_probs=61.8
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
.+|||+|++..+.+.+++.++.++++| |+|+|+..-.+| + ||.+..+.+++.+.+..+...
T Consensus 98 ~~gi~~P~t~~~~~~~~~~~~~~~~~~-p~vvKP~~g~~g--~---------gv~~i~~~~~l~~~~~~~~~~------- 158 (277)
T TIGR00768 98 KAGLPQPRTGLAGSPEEALKLIEEIGF-PVVLKPVFGSWG--R---------LVSLARDKQAAETLLEHFEQL------- 158 (277)
T ss_pred HCCCCCCCEEEeCCHHHHHHHHHhcCC-CEEEEECcCCCC--C---------ceEEEcCHHHHHHHHHHHHHh-------
Confidence 799999999999999999999999997 999999654332 3 677777888887766654321
Q ss_pred CCCCcccCeEEEEeeeCCc--eeEEEEE
Q psy7785 99 PKTGINVNKVMVAKSVNIT--RETYFCI 124 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~--~E~~vgv 124 (525)
+.....++||+++++. .++.+.+
T Consensus 159 ---~~~~~~~lvQe~I~~~~~~~~rv~v 183 (277)
T TIGR00768 159 ---NGPQNLFYVQEYIKKPGGRDIRVFV 183 (277)
T ss_pred ---cccCCcEEEEeeecCCCCceEEEEE
Confidence 1012469999999853 3555544
No 87
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=97.50 E-value=0.00038 Score=80.97 Aligned_cols=86 Identities=19% Similarity=0.138 Sum_probs=66.5
Q ss_pred hCCCCCCCccccCC------HH-HHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcc
Q psy7785 19 VSTVHSTDKVCLED------AR-TATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGH 91 (525)
Q Consensus 19 ~~GIpvp~~~~~~~------~e-ea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~ 91 (525)
.+|||||++..++. .+ +...+.+++|| |+|||+-... . .-||.+..+.+|+.+++++.+..
T Consensus 578 ~~GIpt~~~~~~~~~~~~~~~~~~~~~~~~~lg~-P~iVKP~~~G----s-------S~Gv~~v~~~~el~~a~~~a~~~ 645 (809)
T PRK14573 578 DVGVPVVPYQPLTLAGWKREPELCLAHIVEAFSF-PMFVKTAHLG----S-------SIGVFEVHNVEELRDKISEAFLY 645 (809)
T ss_pred HCCCCCCCEEEEechhcccChHHHHHHHHHhcCC-CEEEeeCCCC----C-------CCCEEEECCHHHHHHHHHHHHhc
Confidence 79999999988863 22 23456788997 9999996432 1 13888889999999999887521
Q ss_pred ccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 92 KLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 92 ~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
-..++|||++.+++|+.+++..|..
T Consensus 646 -------------~~~vlVEe~i~~grEi~v~vl~~~~ 670 (809)
T PRK14573 646 -------------DTDVFVEESRLGSREIEVSCLGDGS 670 (809)
T ss_pred -------------CCcEEEEeccCCCEEEEEEEEeCCC
Confidence 1359999999888999999998854
No 88
>PRK06091 membrane protein FdrA; Validated
Probab=97.47 E-value=0.0011 Score=72.60 Aligned_cols=119 Identities=24% Similarity=0.278 Sum_probs=87.7
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCC-----CCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHH
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGG-----VNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAK 375 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~-----a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~ 375 (525)
.|+||+||-||+.+...++.+..+|+-....+-+|+. +..-.+.++++.+.+||+++.|++.+-. +.+.+.+
T Consensus 193 ~G~IgiVSQSGtl~~~v~~~a~~~GiG~S~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvIvly~kp---paE~v~~ 269 (555)
T PRK06091 193 EGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSAEVGGISALTALEMLSADEKSEVIAFVSKP---PAEAVRL 269 (555)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCccccccCCCCHHHHHHHHhhCCCCcEEEEEEec---CchHHHH
Confidence 6789999999999999999999999876666666655 2112378999999999999998876521 1244556
Q ss_pred HHHHHHHhcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhh
Q psy7785 376 GLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACK 430 (525)
Q Consensus 376 ~i~~a~~~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~ 430 (525)
.+.++++. .+|||++...|.... +. ++.|+-.. ++.++++.....+.
T Consensus 270 ~fl~aar~--~~KPVVvlk~Grs~~-g~---~q~GVi~a--~tleEl~~~A~~la 316 (555)
T PRK06091 270 KIINAMKA--TGKPVVALFLGYTPA-VA---RDENVWFA--STLDEAARLACLLS 316 (555)
T ss_pred HHHHHHhh--CCCCEEEEEecCCch-hh---hcCCeEEe--CCHHHHHHHHHHHh
Confidence 77777776 589999988885322 21 66677555 88888887776554
No 89
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=97.39 E-value=0.00054 Score=70.13 Aligned_cols=80 Identities=19% Similarity=0.265 Sum_probs=61.0
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
+.|||+|++..+++.. ..+.++| |+|+|+..-.++ + ||.+..|.+++.+++++.+..
T Consensus 104 ~~~ip~p~~~~~~~~~----~~~~l~~-P~vvKP~~g~~s--~---------Gv~~v~~~~el~~~~~~~~~~------- 160 (299)
T PRK14571 104 KGTVEIPDFVEIKEFM----KTSPLGY-PCVVKPRREGSS--I---------GVFICESDEEFQHALKEDLPR------- 160 (299)
T ss_pred hcCCCCCCEEEEechh----hhhhcCC-CEEEecCCCCCc--C---------CEEEECCHHHHHHHHHHHHhh-------
Confidence 4589999999886533 2457897 999999644322 2 788888999998888776431
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcC
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDR 128 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~ 128 (525)
...++||||++ ++|+.+++..+.
T Consensus 161 ------~~~vlVEeyI~-G~E~sv~vl~~~ 183 (299)
T PRK14571 161 ------YGSVIVQEYIP-GREMTVSILETE 183 (299)
T ss_pred ------CCcEEEEcccc-ceEEEEEEEcCC
Confidence 13699999998 789999999874
No 90
>PLN00124 succinyl-CoA ligase [GDP-forming] subunit beta; Provisional
Probab=97.34 E-value=0.00034 Score=74.93 Aligned_cols=55 Identities=58% Similarity=0.800 Sum_probs=46.3
Q ss_pred HHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHHHHHHhHh
Q psy7785 470 AASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAANWFIL 524 (525)
Q Consensus 470 Av~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (525)
|...+++++++.+..|+|+++.|||++||++||+++|+++++++||+||++.||.
T Consensus 364 A~gii~a~~~~~~~~pivvRl~Gtn~~~g~~~l~~~~~~~~~~~~l~~A~~~~v~ 418 (422)
T PLN00124 364 ASGIVNAAKQVGLKVPLVVRLEGTNVDQGKRILKESGMTLITAEDLDDAAEKAVK 418 (422)
T ss_pred HHHHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHhCCCCeEEcCCHHHHHHHHHH
Confidence 3344455666545789999999999999999999999999999999999999974
No 91
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=97.27 E-value=0.0053 Score=61.58 Aligned_cols=124 Identities=18% Similarity=0.247 Sum_probs=88.9
Q ss_pred cCCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCH-HHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHH
Q psy7785 300 MDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNE-ESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLV 378 (525)
Q Consensus 300 ~~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~-~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~ 378 (525)
..|+||||+-||.+.--++-.+.+.|+-..--+=++|+.-. -.|.++|+.+.+||+.++++..---|. +.++.|...+
T Consensus 144 ~~G~IGiVSrSGTLTyE~~~qlt~~G~GqS~~IGiGGDpi~Gt~fid~L~~fe~Dp~T~~ivmiGEiGG-~aEe~AA~~i 222 (293)
T COG0074 144 KPGNIGIVSRSGTLTYEAVSQLTEAGLGQSTAIGIGGDPIPGTSFIDALEMFEADPETEAIVMIGEIGG-PAEEEAAEYI 222 (293)
T ss_pred cCCceEEEecCcchHHHHHHHHHhcCCceEEEEEeCCCCcCCccHHHHHHHHhcCccccEEEEEecCCC-cHHHHHHHHH
Confidence 36899999999999999999999999977777888888554 349999999999999999886432122 2344444333
Q ss_pred HHHHhcCCCCcEEEEeCCc--------------------chHHHHHHHhhCCCCccccCCHHHHHHHHHHh
Q psy7785 379 NACKSFKLSIPLVVRLEGT--------------------NVQEGKRILDESKLPLIFASDLDEAASLVNAC 429 (525)
Q Consensus 379 ~a~~~~~~~kPivv~~~g~--------------------~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l 429 (525)
+. .. .+||+|.+..|. ..+.-.+.|+++|+++- ++|.+-...+...
T Consensus 223 ~~-~~--~~KPVVa~iaG~tap~gkrmGhaGaiv~~~~gta~~Ki~al~~aGv~v~--etp~~l~~~l~~v 288 (293)
T COG0074 223 KA-NA--TRKPVVAYIAGRTAPEGKRMGHAGAIVSGGKGTAESKIAALEAAGVKVA--ETPAELGELLLEV 288 (293)
T ss_pred HH-hc--cCCCEEEEEeccCCCccchhhhhhhhhcCCCccHHHHHHHHHHcCCeec--CCHHHHHHHHHHH
Confidence 33 21 459999876552 12233567888899888 8887766655543
No 92
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=97.22 E-value=0.00057 Score=71.11 Aligned_cols=50 Identities=60% Similarity=0.771 Sum_probs=42.5
Q ss_pred HHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHHHHHHhHh
Q psy7785 475 NACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAANWFIL 524 (525)
Q Consensus 475 ~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (525)
++.++...--|+|+++.|||+++|||||+++|++++++++|++|+..++.
T Consensus 333 ~Al~e~~~~vPlVVRL~GtN~e~Gk~iL~esg~~i~~~~~l~~aa~k~v~ 382 (387)
T COG0045 333 AALKEVGVNVPLVVRLEGTNVEEGKRILAESGLNIIAADDLDEAAEKAVE 382 (387)
T ss_pred HHHHhcCCCCCEEEEcCCCCHHHHHHHHHHcCCceEecccHHHHHHHHHH
Confidence 34445312489999999999999999999999999999999999998874
No 93
>PRK00696 sucC succinyl-CoA synthetase subunit beta; Provisional
Probab=97.22 E-value=0.00066 Score=72.28 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEec
Q psy7785 445 TNVQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEG 492 (525)
Q Consensus 445 ~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~ 492 (525)
++|+++|++|++||||+ .+++|.+||.+ +++++ .|||||+|.+.
T Consensus 3 l~e~~ak~lL~~~gIpvp~~~~~~~~~ea~~---~a~~i-~g~PvVvK~~~ 49 (388)
T PRK00696 3 LHEYQAKELFAKYGVPVPRGIVATTPEEAVE---AAEEL-GGGVWVVKAQV 49 (388)
T ss_pred CCHHHHHHHHHHcCCCCCCCeeeCCHHHHHH---HHHHc-CCCcEEEEEee
Confidence 46899999999999999 89999999998 56673 18999999963
No 94
>KOG1447|consensus
Probab=97.12 E-value=0.00089 Score=66.12 Aligned_cols=56 Identities=52% Similarity=0.795 Sum_probs=47.5
Q ss_pred HHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHHHHHHhHh
Q psy7785 469 EAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAANWFIL 524 (525)
Q Consensus 469 eAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (525)
-|-..+.+++++....|+|+++.|||+++|++||.++|++.+-..|+|||++.|+.
T Consensus 354 IANGiv~A~~kl~LnVPlVVRLEGTNV~~A~~Ilk~SGLpI~tA~dLddAA~KAVa 409 (412)
T KOG1447|consen 354 IANGIVKACRKLELNVPLVVRLEGTNVQEAQKILKKSGLPITTAIDLDDAAKKAVA 409 (412)
T ss_pred HhhHHHHHHHhhcCCCcEEEEEcCCCHHHHHHHHHhcCCceeeccchHHHHHHHhh
Confidence 34444446777645789999999999999999998899999999999999999874
No 95
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=97.07 E-value=0.002 Score=71.65 Aligned_cols=80 Identities=11% Similarity=0.233 Sum_probs=62.6
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEe-CCcccHHHHHHHHhcccccccc
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFT-NNVQDIPPILEKMIGHKLITKQ 97 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~-~~~eea~~a~~~l~~~~~~~~~ 97 (525)
+.|||||++..+.+.+++.++++++| |+|+|+..- +.|+ ||.++ .+.+++.++++.....
T Consensus 307 ~aGIpVP~~~~~~~~~~~~~~~~~~G--~vVVKP~~G--~~G~---------Gv~v~v~~~~eL~~a~~~a~~~------ 367 (547)
T TIGR03103 307 EAGLQVPEQQLAGNGEAVEAFLAEHG--AVVVKPVRG--EQGK---------GISVDVRTPDDLEAAIAKARQF------ 367 (547)
T ss_pred HcCcCCCCEEEECCHHHHHHHHHHhC--CEEEEECCC--CCCc---------CeEEecCCHHHHHHHHHHHHhc------
Confidence 79999999999999999999999997 599998533 2244 78774 5788888888776321
Q ss_pred CCCCCcccCeEEEEeeeCCceeEEEEEE
Q psy7785 98 TPKTGINVNKVMVAKSVNITRETYFCIV 125 (525)
Q Consensus 98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~ 125 (525)
...++||++++ +.|+.+.+.
T Consensus 368 -------~~~vlvEe~i~-G~d~Rv~Vi 387 (547)
T TIGR03103 368 -------CDRVLLERYVP-GEDLRLVVI 387 (547)
T ss_pred -------CCcEEEEEecc-CCeEEEEEE
Confidence 14699999997 678887665
No 96
>PRK13277 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase-like protein; Provisional
Probab=97.05 E-value=0.0018 Score=67.70 Aligned_cols=91 Identities=11% Similarity=0.145 Sum_probs=67.6
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccc--cCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAG--GRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~--~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
..|||+|+... ++ +++++ ||+||+....| +| |+.++.|++|+...++++......
T Consensus 136 ~aGI~~Pk~~~--~p-------~eId~-PVIVKp~~asG~~sr-----------G~f~a~s~eEl~~~a~~l~~~g~I-- 192 (366)
T PRK13277 136 KAGIPYPKLFK--DP-------EEIDR-PVIVKLPEAKRRLER-----------GFFTASSYEDFYEKSEELIKAGVI-- 192 (366)
T ss_pred HcCCCCceeec--Cc-------cccCc-cEEEEECCCCCcccc-----------CeEeeCCHHHHHHHHHhhhhcCcc--
Confidence 69999998765 33 36676 99999976654 33 788888999999888887643221
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
+.......+|||++. |.|+++-+..||.. |-+.++|
T Consensus 193 ----~~~~~~~~iIQEyI~-G~ey~~d~F~s~l~-g~ve~l~ 228 (366)
T PRK13277 193 ----DREDLKNARIEEYVI-GAHFNFNYFYSPIR-DRLELLG 228 (366)
T ss_pred ----cccccccceeEeccC-CCEEEEEEEEeccC-CcEEEEE
Confidence 112247789999997 78999999999865 5566666
No 97
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=96.98 E-value=0.0039 Score=64.63 Aligned_cols=85 Identities=16% Similarity=0.286 Sum_probs=61.8
Q ss_pred hCCCCCCCccccCCHHHHHHH-HHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcc-cHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDKVCLEDARTATNI-LKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQ-DIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~-a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~e-ea~~a~~~l~~~~~~~~ 96 (525)
+.|||+|++.++.+++++... .+.+|| |+|+|+-.-.+ |+ ||.+..+.+ ++.+..+.+...
T Consensus 129 ~~~ipvP~T~i~~~~~~~~~~~~~~~g~-pvVlKp~~Gs~--G~---------gV~~v~~~d~~l~~~~e~~~~~----- 191 (318)
T COG0189 129 KAGIPVPPTLITRDPDEAAEFVAEHLGF-PVVLKPLDGSG--GR---------GVFLVEDADPELLSLLETLTQE----- 191 (318)
T ss_pred hcCCCCCCEEEEcCHHHHHHHHHHhcCC-CEEEeeCCCCC--cc---------ceEEecCCChhHHHHHHHHhcc-----
Confidence 789999999999998666554 555676 99999853333 34 788888877 777777776432
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEEEEc
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCIVQD 127 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D 127 (525)
+ -+-++||+|++.....+..+...
T Consensus 192 -----~--~~~~ivQeyi~~~~~~~rrivv~ 215 (318)
T COG0189 192 -----G--RKLIIVQEYIPKAKRDDRRVLVG 215 (318)
T ss_pred -----c--cceEehhhhcCcccCCcEEEEEe
Confidence 1 24589999998776666666554
No 98
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=96.94 E-value=0.013 Score=62.02 Aligned_cols=117 Identities=20% Similarity=0.224 Sum_probs=72.3
Q ss_pred HHHHhcCCCccEEEEEec-cccc---Ch----H-HHHHHHHHHHHhcCCCCcEEEEeCCcc-h--HHHHHHHhhCCCCcc
Q psy7785 347 FRIISSDSNVKCILVNVF-GGIV---NC----A-TIAKGLVNACKSFKLSIPLVVRLEGTN-V--QEGKRILDESKLPLI 414 (525)
Q Consensus 347 l~~ll~dp~vd~vlv~~~-~~~~---~~----~-~ia~~i~~a~~~~~~~kPivv~~~g~~-~--~~~~~~L~~~Gvpvf 414 (525)
...|.++|.+.-+++.-. +|+. .+ . .-.+.|++.+++. +.-++ ..|++ + .--...|+++|||+|
T Consensus 16 A~~la~s~~v~~~~~apgN~G~a~~~~~~~~~~~~~~~~lv~fA~~~--~idl~--vVGPE~pL~~GvvD~l~~~Gi~vF 91 (428)
T COG0151 16 AWKLAQSPLVLYVYVAPGNPGTALEAYLVNIEIDTDHEALVAFAKEK--NVDLV--VVGPEAPLVAGVVDALRAAGIPVF 91 (428)
T ss_pred HHHHhcCCceeEEEEeCCCCccchhhhhccCccccCHHHHHHHHHHc--CCCEE--EECCcHHHhhhhHHHHHHCCCcee
Confidence 344556777776666321 1221 00 1 1246777777762 22222 23432 1 112568999999999
Q ss_pred ccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEe
Q psy7785 415 FASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLE 491 (525)
Q Consensus 415 ~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~ 491 (525)
.|..++..|-. +-.-+|+++..||||. ...++.++|.+. .++ .|.|+|+|..
T Consensus 92 ---GPsk~AA~lE~-----------------SK~faK~fm~k~~IPta~y~~f~~~e~a~ay---i~~--~g~piVVKad 146 (428)
T COG0151 92 ---GPTKAAAQLEG-----------------SKAFAKDFMKKYGIPTAEYEVFTDPEEAKAY---IDE--KGAPIVVKAD 146 (428)
T ss_pred ---CcCHHHHHHHh-----------------hHHHHHHHHHHcCCCcccccccCCHHHHHHH---HHH--cCCCEEEecc
Confidence 55555544421 2336899999999998 777799999984 455 3999999985
Q ss_pred c
Q psy7785 492 G 492 (525)
Q Consensus 492 ~ 492 (525)
|
T Consensus 147 G 147 (428)
T COG0151 147 G 147 (428)
T ss_pred c
Confidence 5
No 99
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit. This family contains a split seen both in a maximum parsimony tree (which ignores gaps) and in the gap pattern near position 85 of the seed alignment. Eukaryotic and most bacterial sequences are longer and contain a region similar to TXQTXXXG. Sequences from Deinococcus radiodurans, Mycobacterium tuberculosis, Streptomyces coelicolor, and the Archaea are 6 amino acids shorter in that region and contain a motif resembling [KR]G
Probab=96.89 E-value=0.0019 Score=68.73 Aligned_cols=42 Identities=21% Similarity=0.402 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCC-CcEEEEEe
Q psy7785 445 TNVQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLS-IPLVVRLE 491 (525)
Q Consensus 445 ~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G-~PVVlKi~ 491 (525)
++|+++|++|++||||+ .++++.+|+.+ +++++ | ||||+|.+
T Consensus 3 L~E~~aK~ll~~~GIpvp~~~~~~~~~ea~~---~~~~i--g~~PvVvK~~ 48 (386)
T TIGR01016 3 LHEYQAKQIFAKYGIPVPRGYVATSVEEAEE---IAAKL--GAGPVVVKAQ 48 (386)
T ss_pred CcHHHHHHHHHHcCCCCCCceeeCCHHHHHH---HHHHh--CCCcEEEEec
Confidence 46899999999999999 88899999888 56675 8 99999997
No 100
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=96.80 E-value=0.0016 Score=69.38 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCc-EEEEEec
Q psy7785 445 TNVQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIP-LVVRLEG 492 (525)
Q Consensus 445 ~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~P-VVlKi~~ 492 (525)
+.|+++|+||++||||+ .+++|.+||.+ +++++ ||| +|+|++.
T Consensus 3 l~E~eak~lL~~yGIpvp~~~~~~~~~ea~~---~a~~l--g~p~~VvK~qv 49 (392)
T PRK14046 3 IHEYQAKELLASFGVAVPRGALAYSPEQAVY---RAREL--GGWHWVVKAQI 49 (392)
T ss_pred CcHHHHHHHHHHcCCCCCCceEECCHHHHHH---HHHHc--CCCcEEEEeee
Confidence 46899999999999999 89999999998 57775 895 5999864
No 101
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=96.79 E-value=0.0068 Score=65.76 Aligned_cols=99 Identities=22% Similarity=0.351 Sum_probs=76.6
Q ss_pred hCCCCCCCccc--cCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDKVC--LEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~~--~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
+.|+|+.+++. ..+.+++...++++|| ||.+|+- +||=|| |.++..+++|+.++++.-......
T Consensus 125 ~AgVp~VPG~~g~~qd~~~~~~~A~eiGy-PVlIKAs--aGGGGK---------GMRvv~~~~e~~e~l~sarrEA~a-- 190 (645)
T COG4770 125 EAGVPTVPGYHGPIQDAAELVAIAEEIGY-PVLIKAS--AGGGGK---------GMRVVETPEEFAEALESARREAKA-- 190 (645)
T ss_pred HcCCCccCCCCCcccCHHHHHHHHHhcCC-cEEEEec--cCCCCC---------ceEeecCHHHHHHHHHHHHHHHHh--
Confidence 79999887765 5789999999999998 9999995 444467 889999998888887766543221
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
..| -..++||+|+...+=+-+-+.-|.. |-++-+|
T Consensus 191 ---sFG--ddrv~iEkyl~~PRHIEiQV~aD~H--GNvv~Lg 225 (645)
T COG4770 191 ---SFG--DDRVFIEKYLDKPRHIEIQVFADQH--GNVVHLG 225 (645)
T ss_pred ---hcC--CceEehhhhcCCCceEEEEEEecCC--CCEEEee
Confidence 123 3689999999877878888888875 5677766
No 102
>PLN02235 ATP citrate (pro-S)-lyase
Probab=96.74 E-value=0.0022 Score=68.28 Aligned_cols=42 Identities=21% Similarity=0.262 Sum_probs=39.5
Q ss_pred CCcEEEEEecCChHHHHHhhh----hCCCCceecc---CHHHHHHHhHh
Q psy7785 483 SIPLVVRLEGTNVQEGKRILD----ESKLPLIFAS---DLDEAANWFIL 524 (525)
Q Consensus 483 G~PVVlKi~~~~~~~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~ 524 (525)
..|+|+++.|||++||++||+ ++|+++++++ +|+|||+.|+.
T Consensus 369 ~vpivVRl~GtN~eeG~~il~e~~~~~gl~i~~~~~~~~m~~a~~~av~ 417 (423)
T PLN02235 369 RMHIFVRRGGPNYQKGLAKMRALGEEIGVPIEVYGPEATMTGICKQAID 417 (423)
T ss_pred CccEEEECCCCCHHHHHHHHHHhHHhcCCcEEEeCCCCCHHHHHHHHHh
Confidence 579999999999999999999 7999999999 99999999983
No 103
>KOG0238|consensus
Probab=96.52 E-value=0.009 Score=63.94 Aligned_cols=101 Identities=18% Similarity=0.262 Sum_probs=76.7
Q ss_pred hhhCCCCCCCc--cccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccc
Q psy7785 17 KPVSTVHSTDK--VCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLI 94 (525)
Q Consensus 17 k~~~GIpvp~~--~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~ 94 (525)
+++.|+|+.++ ....|.+++.+.+.++|| ||.+|+. +||=|| |.++..+++|.++.++.-.....
T Consensus 119 m~~AgVp~vpG~~g~~qs~e~~~~~a~eIgy-PvMiKa~--~GGGGk---------GMria~~~~ef~~~~~~ak~Ea~- 185 (670)
T KOG0238|consen 119 MKAAGVPLVPGYHGEDQSDEEAKKVAREIGY-PVMIKAT--AGGGGK---------GMRIAWSEEEFEEGLESAKQEAA- 185 (670)
T ss_pred HHhcCCccccCcccccccHHHHHHHHHhcCC-cEEEEec--cCCCCc---------ceEeecChHHHHHHHHHHHHHHH-
Confidence 33899998665 567889999999999998 9999995 444467 78999999888877766543322
Q ss_pred cccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 95 TKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 95 ~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
+..-..++|+|+|++..+-+-+-+.-|. | |-.+-++
T Consensus 186 ------~sFGdd~~llEkfi~npRHiEvQv~gD~-h-Gnav~l~ 221 (670)
T KOG0238|consen 186 ------KSFGDDGMLLEKFIDNPRHIEVQVFGDK-H-GNAVHLG 221 (670)
T ss_pred ------hhcCcchhhHHHhccCCceEEEEEEecC-C-CcEEEec
Confidence 1122478999999988888888888786 4 6777777
No 104
>PRK06849 hypothetical protein; Provisional
Probab=96.48 E-value=0.011 Score=62.83 Aligned_cols=82 Identities=12% Similarity=0.109 Sum_probs=53.4
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhc-CCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDL-NFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ 97 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~l-g~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~ 97 (525)
..|||+|++..+++.+++.++..+. +| |+|+|+....++ .||.+..+.+ ..+.+. .
T Consensus 126 ~~GipvP~t~~v~~~~~l~~~~~~~~~~-P~vlKP~~~~~~-----------~~v~~~~~~~----~l~~~~---~---- 182 (389)
T PRK06849 126 SLGLSVPKTYLITDPEAIRNFMFKTPHT-PYVLKPIYSRFV-----------RRVDLLPKEA----ALKELP---I---- 182 (389)
T ss_pred HcCCCCCCEEEeCCHHHHHHHhhcCCCC-cEEEEeCcccCC-----------CeEEEecCHH----Hhcccc---c----
Confidence 7999999999999999998888776 76 999999543222 3566644411 111110 0
Q ss_pred CCCCCcccCeEEEEeeeCCceeEEEEEEEcC
Q psy7785 98 TPKTGINVNKVMVAKSVNITRETYFCIVQDR 128 (525)
Q Consensus 98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~ 128 (525)
. ..+.++|||++++......++.+|+
T Consensus 183 ----~-~~~~~ivQe~I~G~e~~~~~~~~~G 208 (389)
T PRK06849 183 ----S-KDNPWVMQEFIQGKEYCSYSIVRSG 208 (389)
T ss_pred ----C-CCCCeEEEEEecCCeEEEEEEEECC
Confidence 0 1245899999995443455555553
No 105
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=96.38 E-value=0.025 Score=61.12 Aligned_cols=161 Identities=13% Similarity=0.191 Sum_probs=93.1
Q ss_pred EEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhc
Q psy7785 305 GCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSF 384 (525)
Q Consensus 305 aIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~ 384 (525)
-+|.|.|..++-..=+|.+.|+++ +=+...++.+. +-..++|.. +-+. +....+.......++.++..
T Consensus 5 iLIanrGeia~ri~ra~~~lGi~t---vav~s~~d~~~----~~~~~adea---v~i~-~~~~~~syl~i~~ii~~a~~- 72 (449)
T COG0439 5 ILIANRGEIAVRIIRACRELGIET---VAVYSEADADA----LHVALADEA---VCIG-PAPSADSYLNIDAIIAAAEE- 72 (449)
T ss_pred EEEecCchhHHHHHHHHHHhCCeE---EEEeccccccc----hhhhhCceE---EEcC-CccchhhhhhHHHHHHHHHh-
Confidence 467899999999999999999976 33334333332 223334431 2222 11122222333445555544
Q ss_pred CCCCcEEEEeCC--cchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe-
Q psy7785 385 KLSIPLVVRLEG--TNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL- 461 (525)
Q Consensus 385 ~~~kPivv~~~g--~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv- 461 (525)
...-.+..-.| .......+...+.|+ .|.-++ .++++.+. +-..+++++.++|||+
T Consensus 73 -~gadai~pGygflsen~~fae~~~~~gl-~fiGP~-~~~i~~mg------------------dK~~ar~~~~~aGVP~v 131 (449)
T COG0439 73 -TGADAIHPGYGFLSENAAFAEACAEAGL-TFIGPS-AEAIRRMG------------------DKITARRLMAKAGVPVV 131 (449)
T ss_pred -cCCceEcccchhhhCCHHHHHHHHHcCC-eeeCcC-HHHHHHhh------------------hHHHHHHHHHHcCCCcC
Confidence 22212211122 223455667788885 342222 22333332 1236899999999999
Q ss_pred ----EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhh
Q psy7785 462 ----IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILD 503 (525)
Q Consensus 462 ----~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~ 503 (525)
....+.+|+.+ .+++ +||||++|..+.+-..|-++.+
T Consensus 132 pgs~~~~~~~ee~~~---~a~~--iGyPVivKa~~GgGg~G~r~v~ 172 (449)
T COG0439 132 PGSDGAVADNEEALA---IAEE--IGYPVIVKAAAGGGGRGMRVVR 172 (449)
T ss_pred CCCCCCcCCHHHHHH---HHHH--cCCCEEEEECCCCCcccEEEEC
Confidence 22677788888 5777 4999999999888777766544
No 106
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=96.30 E-value=0.0097 Score=57.67 Aligned_cols=40 Identities=30% Similarity=0.484 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCC-cEEEEE
Q psy7785 446 NVQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSI-PLVVRL 490 (525)
Q Consensus 446 ~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~-PVVlKi 490 (525)
.|+++|+||+.||||| .++.|++||.. +++++ |. ++|+|.
T Consensus 3 ~EyqaK~ll~~~gi~vp~g~~a~s~eea~~---~~~~l--~~~~~VvKa 46 (202)
T PF08442_consen 3 HEYQAKELLRKYGIPVPRGVVATSPEEARE---AAKEL--GGKPLVVKA 46 (202)
T ss_dssp -HHHHHHHHHCTT----SEEEESSHHHHHH---HHHHH--TTSSEEEEE
T ss_pred hHHHHHHHHHHcCCCCCCeeecCCHHHHHH---HHHHh--CCCcEEEEE
Confidence 5899999999999999 99999999998 56676 55 579998
No 107
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=96.26 E-value=0.03 Score=61.21 Aligned_cols=158 Identities=16% Similarity=0.155 Sum_probs=86.7
Q ss_pred cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHH
Q psy7785 303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACK 382 (525)
Q Consensus 303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~ 382 (525)
+|.|+ |+|-.++..+-+|.+.|... +=+..+.+. . +...-..| -.+. +..+......-.+.|.++++
T Consensus 4 kvLi~-~~geia~~ii~a~~~~Gi~~---v~v~~~~d~--~--a~~~~~aD----~~~~-i~~~~~~~y~d~~~i~~~a~ 70 (472)
T PRK07178 4 KILIA-NRGEIAVRIVRACAEMGIRS---VAIYSEADR--H--ALHVKRAD----EAYS-IGADPLAGYLNPRRLVNLAV 70 (472)
T ss_pred EEEEE-CCcHHHHHHHHHHHHcCCeE---EEEeCCCcc--C--CccHhhCC----EEEE-cCCCchhhhcCHHHHHHHHH
Confidence 56665 89999999999999999852 111111111 0 01111122 1111 11111111111235566665
Q ss_pred hcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCC
Q psy7785 383 SFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLP 460 (525)
Q Consensus 383 ~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIp 460 (525)
+ .+.-.+....|. ......+.+++.|+|++ ....+++..+. +-...+++|.++|||
T Consensus 71 ~--~~~D~I~pg~g~lse~~~~a~~~e~~Gi~~i--gps~~~i~~~~------------------DK~~~r~~l~~~GIp 128 (472)
T PRK07178 71 E--TGCDALHPGYGFLSENAELAEICAERGIKFI--GPSAEVIRRMG------------------DKTEARRAMIKAGVP 128 (472)
T ss_pred H--HCCCEEEeCCCCcccCHHHHHHHHHcCCCcc--CCCHHHHHHhc------------------CHHHHHHHHHHCCCC
Confidence 5 233344332231 12334467788899876 44444444432 234689999999999
Q ss_pred e---E--EEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHH
Q psy7785 461 L---I--FASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKR 500 (525)
Q Consensus 461 v---~--lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~ 500 (525)
+ . ...+.+++.+ .++++ |||||+|-....-..|.+
T Consensus 129 ~pp~~~~~~~~~~e~~~---~~~~i--gyPvvvKp~~ggGg~Gv~ 168 (472)
T PRK07178 129 VTPGSEGNLADLDEALA---EAERI--GYPVMLKATSGGGGRGIR 168 (472)
T ss_pred CCCCcCcCCCCHHHHHH---HHHHc--CCcEEEEeCCCCCCCCce
Confidence 8 2 3678888877 45674 999999997765443333
No 108
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=96.23 E-value=0.091 Score=56.76 Aligned_cols=66 Identities=20% Similarity=0.291 Sum_probs=47.0
Q ss_pred HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS 479 (525)
Q Consensus 403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~ 479 (525)
...+++.|+|+| . |......+. .+-..+|++|+.+|||+ ..+++.+++.+ .+++
T Consensus 85 ad~~~~~Gip~~--G-p~~~aa~le-----------------~dK~~~K~~l~~~gIpt~~~~~~~~~~ea~~---~~~~ 141 (426)
T PRK13789 85 ADWAAELGIPCF--G-PDSYCAQVE-----------------GSKHFAKSLMKEAKIPTASYKTFTEYSSSLS---YLES 141 (426)
T ss_pred HHHHHHcCCCcC--C-CHHHHHHHH-----------------cCHHHHHHHHHHcCCCCCCeEeeCCHHHHHH---HHHh
Confidence 356788999988 3 322221111 12346899999999998 77889999877 4556
Q ss_pred cCCCCcEEEEEecC
Q psy7785 480 FKLSIPLVVRLEGT 493 (525)
Q Consensus 480 ~~~G~PVVlKi~~~ 493 (525)
+ |||+|+|-.+.
T Consensus 142 ~--~~PvVVKp~~~ 153 (426)
T PRK13789 142 E--MLPIVIKADGL 153 (426)
T ss_pred c--CCCEEEEeCCC
Confidence 4 99999999773
No 109
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=96.23 E-value=0.037 Score=60.06 Aligned_cols=153 Identities=12% Similarity=0.132 Sum_probs=81.5
Q ss_pred CcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHH
Q psy7785 302 GNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNAC 381 (525)
Q Consensus 302 ~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~ 381 (525)
++|+|+ |+|=.++..+-++.+.|...-- +|. .++.. +...-+.|. .+.+ .+........-.+.|++++
T Consensus 3 kkili~-g~g~~~~~~~~aa~~lG~~vv~-~~~----~~d~~--a~~~~~aD~---~~~~-~~~~~~~~y~d~~~l~~~a 70 (449)
T TIGR00514 3 DKILIA-NRGEIALRILRACKELGIKTVA-VHS----TADRD--ALHVLLADE---AVCI-GPAPSAKSYLNIPNIISAA 70 (449)
T ss_pred ceEEEe-CCCHHHHHHHHHHHHcCCeEEE-EEC----hhhhc--ccccccCCE---EEEc-CCCCchhchhCHHHHHHHH
Confidence 378887 7888899999999999986310 111 00100 000111221 1111 0110000011123556655
Q ss_pred HhcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCC
Q psy7785 382 KSFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKL 459 (525)
Q Consensus 382 ~~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGI 459 (525)
++. +.-+++...|. ......+.+++.|+|++ ....+++..+ .+-...+++|+++||
T Consensus 71 ~~~--~id~I~pg~g~~se~~~~a~~~e~~Gi~~~--g~~~~~~~~~------------------~DK~~~r~~l~~~gi 128 (449)
T TIGR00514 71 EIT--GADAIHPGYGFLSENANFAEQCERSGFTFI--GPSAESIRLM------------------GDKVSAIETMKKAGV 128 (449)
T ss_pred HHh--CCCEEEeCCCccccCHHHHHHHHHCCCcEE--CcCHHHHHHh------------------CCHHHHHHHHHHCCC
Confidence 542 22223222221 11223457788899877 4434444332 123468999999999
Q ss_pred Ce-----EEEcChhHHHHHHHHhhhcCCCCcEEEEEecC
Q psy7785 460 PL-----IFASDLDEAASLVNACKSFKLSIPLVVRLEGT 493 (525)
Q Consensus 460 pv-----~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~ 493 (525)
|+ .++.+.+++.+ .++++ |||||+|-...
T Consensus 129 p~pp~~~~~~~~~~e~~~---~~~~i--g~PvvvKP~~g 162 (449)
T TIGR00514 129 PCVPGSDGLVEDEEENVR---IAKRI--GYPVIIKATAG 162 (449)
T ss_pred CCCCCcccCcCCHHHHHH---HHHHh--CCCEEEEeCCC
Confidence 98 25678888877 45564 99999997654
No 110
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=96.08 E-value=0.065 Score=56.93 Aligned_cols=65 Identities=18% Similarity=0.301 Sum_probs=47.2
Q ss_pred HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS 479 (525)
Q Consensus 403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~ 479 (525)
...|++.|+|+| ....++++.. .+-..+|++|+.+|||+ ..+.+.+++.+ .+++
T Consensus 44 ~d~l~~~Gi~~~--g~s~~a~~l~------------------~dK~~~k~~l~~~gIptp~~~~~~~~~ea~~---~~~~ 100 (379)
T PRK13790 44 ADILRANGFKVF--GPNKQAAQIE------------------GSKLFAKKIMEKYNIPTADYKEVERKKDALT---YIEN 100 (379)
T ss_pred HHHHHhCCCcEE--CCCHHHHHHh------------------CCHHHHHHHHHHCCCCCCCEEEECCHHHHHH---HHHh
Confidence 457888999988 4433433221 12346899999999998 77888888877 3456
Q ss_pred cCCCCcEEEEEec
Q psy7785 480 FKLSIPLVVRLEG 492 (525)
Q Consensus 480 ~~~G~PVVlKi~~ 492 (525)
+ |||+|+|-.+
T Consensus 101 ~--g~PvVvKp~~ 111 (379)
T PRK13790 101 C--ELPVVVKKDG 111 (379)
T ss_pred c--CCCEEEEeCC
Confidence 3 9999999865
No 111
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=95.95 E-value=0.16 Score=53.96 Aligned_cols=143 Identities=16% Similarity=0.126 Sum_probs=77.0
Q ss_pred cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHH
Q psy7785 303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACK 382 (525)
Q Consensus 303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~ 382 (525)
+|+|+. +|-.|.+.+-++.+.|..+. .+|...+.....+ .|. .++ ....+. +.+.+.++
T Consensus 14 ~ilIiG-~g~~~~~~~~a~~~~G~~v~-~~~~~~~~~~~~~--------ad~----~~~---~~~~d~----~~l~~~~~ 72 (395)
T PRK09288 14 RVMLLG-SGELGKEVAIEAQRLGVEVI-AVDRYANAPAMQV--------AHR----SHV---IDMLDG----DALRAVIE 72 (395)
T ss_pred EEEEEC-CCHHHHHHHHHHHHCCCEEE-EEeCCCCCchHHh--------hhh----eEE---CCCCCH----HHHHHHHH
Confidence 677774 55567777778888887532 2232222111111 111 111 111222 34455555
Q ss_pred hcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHH-HHCCCCe
Q psy7785 383 SFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRIL-DESKLPL 461 (525)
Q Consensus 383 ~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL-~ayGIpv 461 (525)
+. +.-.++.....-.......+.+.|+|++ .+++. ++... +-...+++| +.+|||+
T Consensus 73 ~~--~id~vi~~~e~~~~~~~~~l~~~g~~~~--~~~~a-~~~~~------------------dK~~~k~~l~~~~gip~ 129 (395)
T PRK09288 73 RE--KPDYIVPEIEAIATDALVELEKEGFNVV--PTARA-TRLTM------------------NREGIRRLAAEELGLPT 129 (395)
T ss_pred Hh--CCCEEEEeeCcCCHHHHHHHHhcCCeeC--CCHHH-HHHHh------------------CHHHHHHHHHHhCCCCC
Confidence 42 1112332222212234556777899988 66543 22211 123467777 5799999
Q ss_pred ---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785 462 ---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN 494 (525)
Q Consensus 462 ---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~ 494 (525)
..+.|.+++.+ .+.++ |||||+|-.+..
T Consensus 130 p~~~~~~s~~~l~~---~~~~~--g~P~VvKP~~g~ 160 (395)
T PRK09288 130 SPYRFADSLEELRA---AVEEI--GYPCVVKPVMSS 160 (395)
T ss_pred CCceEECCHHHHHH---HHHhc--CCCEEEEeCCCc
Confidence 88899998877 34564 999999976543
No 112
>PRK08654 pyruvate carboxylase subunit A; Validated
Probab=95.86 E-value=0.045 Score=60.34 Aligned_cols=157 Identities=13% Similarity=0.167 Sum_probs=86.4
Q ss_pred EEecchhHHHHHHHHHHHcCCCC-CCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc-ccChHHHHHHHHHHHHh
Q psy7785 306 CLVNGAGLAMATMDIIKLHGGEP-ANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG-IVNCATIAKGLVNACKS 383 (525)
Q Consensus 306 IitnsGG~gvlaaD~~~~~Gl~~-aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~-~~~~~~ia~~i~~a~~~ 383 (525)
.|.|.|-.++..+-+|.+.|.+. . ++...+.. +...-+.| -.++ +.++ ........+.|++++++
T Consensus 6 LIan~Geia~~iiraar~lGi~~V~--v~s~~d~~------a~~~~~AD----~~~~-i~~~~~~~syld~~~i~~~a~~ 72 (499)
T PRK08654 6 LIANRGEIAIRVMRACRELGIKTVA--VYSEADKN------ALFVKYAD----EAYP-IGPAPPSKSYLNIERIIDVAKK 72 (499)
T ss_pred EEECCcHHHHHHHHHHHHcCCeEEE--Eecccccc------ccchhhCC----EEEE-cCCCCcccCccCHHHHHHHHHH
Confidence 46788889999999999999862 1 11111111 11111122 2222 1111 11111113456666665
Q ss_pred cCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe
Q psy7785 384 FKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL 461 (525)
Q Consensus 384 ~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv 461 (525)
. +.-.+....|. ......+.+++.|++++ ....+++..+. +-..+++++.++|||+
T Consensus 73 ~--~~daI~pg~gflsE~~~~a~~~e~~gi~~i--Gps~~~i~~~~------------------DK~~~k~~l~~~GVpv 130 (499)
T PRK08654 73 A--GADAIHPGYGFLAENPEFAKACEKAGIVFI--GPSSDVIEAMG------------------SKINAKKLMKKAGVPV 130 (499)
T ss_pred h--CCCEEEECCCccccCHHHHHHHHHCCCcEE--CCCHHHHHHhC------------------CHHHHHHHHHHcCcCC
Confidence 2 22122222231 22344567888999877 43344444432 2346899999999998
Q ss_pred ---E--EEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhh
Q psy7785 462 ---I--FASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRIL 502 (525)
Q Consensus 462 ---~--lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~ 502 (525)
. ...+.+++.+ .++++ ||||++|-....-..|.+++
T Consensus 131 ~p~~~~~v~~~~e~~~---~a~~i--gyPvvIKp~~GgGG~Gv~iv 171 (499)
T PRK08654 131 LPGTEEGIEDIEEAKE---IAEEI--GYPVIIKASAGGGGIGMRVV 171 (499)
T ss_pred CCCcCcCCCCHHHHHH---HHHHh--CCCEEEEeCCCCCCCeEEEe
Confidence 2 2678888877 46674 99999998776544444333
No 113
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=95.84 E-value=0.014 Score=58.82 Aligned_cols=103 Identities=15% Similarity=0.227 Sum_probs=63.5
Q ss_pred HhhhhhCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccc
Q psy7785 14 YLVKPVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKL 93 (525)
Q Consensus 14 ~~~k~~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~ 93 (525)
|....+||+|.|++..++|..++ .+.++-| ||++|+..- ++++ |... + -+....+.||.+.++.+-... +
T Consensus 119 Y~ra~elgl~~P~Ty~v~S~~d~--~~~el~F-PvILKP~mg-g~~~---~~ar-a-Ka~~a~d~ee~k~a~~~a~ee-i 188 (415)
T COG3919 119 YNRAEELGLPYPKTYLVNSEIDT--LVDELTF-PVILKPGMG-GSVH---FEAR-A-KAFTAADNEEMKLALHRAYEE-I 188 (415)
T ss_pred HHHHHHhCCCCcceEEecchhhh--hhhheee-eEEecCCCC-Ccce---eehh-h-heeeccCHHHHHHHHHHHHHh-c
Confidence 33334899999999999975554 5667887 999998522 1111 1110 1 133445778877777765432 1
Q ss_pred ccccCCCCCcccCeEEEEeeeCCceeEEEE--EEEcCCCCccEEEec
Q psy7785 94 ITKQTPKTGINVNKVMVAKSVNITRETYFC--IVQDRLHNGPVVIIS 138 (525)
Q Consensus 94 ~~~~~~~~g~~~~~vlVee~~~~~~E~~vg--v~~D~~f~gpvi~~g 138 (525)
| ...|+||+|+|+|-|=-++ ..-|.. -|+.+|.
T Consensus 189 --------g--pDnvvvQe~IPGGgE~qfsyaAlw~~g--~pvaeft 223 (415)
T COG3919 189 --------G--PDNVVVQEFIPGGGENQFSYAALWDKG--HPVAEFT 223 (415)
T ss_pred --------C--CCceEEEEecCCCCcccchHHHHHhCC--Cchhhhh
Confidence 2 3689999999988775443 233432 3665554
No 114
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=95.74 E-value=0.14 Score=53.93 Aligned_cols=143 Identities=17% Similarity=0.131 Sum_probs=76.6
Q ss_pred cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHH
Q psy7785 303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACK 382 (525)
Q Consensus 303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~ 382 (525)
+|+|+. ||-.|.+.+.++.+.|..+ -.+|...++.. .. ..| -.++. ...+. +.+.+.++
T Consensus 1 kililG-~g~~~~~l~~aa~~~G~~v-~~~d~~~~~~~------~~--~ad----~~~~~---~~~d~----~~l~~~~~ 59 (380)
T TIGR01142 1 RVLLLG-SGELGKEVAIEAQRLGVEV-IAVDRYANAPA------MQ--VAH----RSYVI---NMLDG----DALRAVIE 59 (380)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCEE-EEEeCCCCCch------hh--hCc----eEEEc---CCCCH----HHHHHHHH
Confidence 467776 5668888899999999852 11122111111 11 111 11211 11222 33444444
Q ss_pred hcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHH-HHHCCCCe
Q psy7785 383 SFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRI-LDESKLPL 461 (525)
Q Consensus 383 ~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~L-L~ayGIpv 461 (525)
+. +.-.++.....-.......+++.|+|++ .+++. +.... +-...+++ ++++|||+
T Consensus 60 ~~--~id~v~~~~e~v~~~~~~~l~~~g~~~~--~~~~~-~~~~~------------------dK~~~~~~~~~~~gip~ 116 (380)
T TIGR01142 60 RE--KPDYIVPEIEAIATDALFELEKEGYFVV--PNARA-TKLTM------------------NREGIRRLAAEELGLPT 116 (380)
T ss_pred Hh--CCCEEEeccCccCHHHHHHHHhcCCeeC--CCHHH-HHHhh------------------CHHHHHHHHHHHCCCCC
Confidence 32 2223322211112233556778899888 66543 22111 11235666 48899999
Q ss_pred ---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785 462 ---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN 494 (525)
Q Consensus 462 ---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~ 494 (525)
..+.+.+++.+ +++++ |||+|+|=....
T Consensus 117 p~~~~~~~~~~~~~---~~~~~--g~P~VvKP~~g~ 147 (380)
T TIGR01142 117 SRYMFADSLDELRE---AVEKI--GYPCVVKPVMSS 147 (380)
T ss_pred CCceEeCCHHHHHH---HHHHc--CCCEEEEECCCc
Confidence 77888888766 45564 999999987643
No 115
>KOG0370|consensus
Probab=95.74 E-value=0.0065 Score=68.99 Aligned_cols=132 Identities=17% Similarity=0.250 Sum_probs=95.9
Q ss_pred hhhhCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccc
Q psy7785 16 VKPVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT 95 (525)
Q Consensus 16 ~k~~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~ 95 (525)
+.++-+.++.++..+++.|||.++++++|| ||++.+-...||=|. .++.+.+|+.+.+..-+..
T Consensus 505 am~ei~e~ia~s~a~~sie~al~aae~l~y-pvivRaayalgglgS-----------gfa~n~eeL~~l~~~a~a~---- 568 (1435)
T KOG0370|consen 505 ALNEINEKIAPSEAVSTIEEALEAAERLGY-PVIVRAAYALGGLGS-----------GFANNEEELQDLAAQALAL---- 568 (1435)
T ss_pred HHHhhcccccchhhHhHHHHHHHHHHhcCc-HHHHHHHHHhcCccc-----------cccccHHHHHHHHhhcccc----
Confidence 344789999999999999999999999997 999987655554332 2566777777666554332
Q ss_pred ccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCccccccc---ccCCCeEEEEecCCCCCCCHHH-
Q psy7785 96 KQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVA---AKTPHLVKTIPIDVHQGITESL- 171 (525)
Q Consensus 96 ~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~---~~~~~~~~~~~l~p~~~l~~~~- 171 (525)
-.++|||+.+.+++|.-.-+.||.. +-+|.+.+ .|+++ -++-|+ +.+.|.+.++.++
T Consensus 569 ---------s~QilvekSlkGwkevEyevvrDa~--~nciTvcn-----men~DplgihtGdS---iVvapsqtlsd~ey 629 (1435)
T KOG0370|consen 569 ---------SPQILVEKSLKGWKEVEYEVVRDAY--DNCITVCN-----MENFDPLGIHTGDS---IVVAPSQTLSDEEY 629 (1435)
T ss_pred ---------CceeeehhhhccccceEEEEEeccc--cchhhhcC-----CcccCcceeeccce---EEEeeccccChHHH
Confidence 3679999999999999999999985 45777764 34443 223343 4568888888865
Q ss_pred ------HHHHHHHcCCC
Q psy7785 172 ------AQDIADFLEFQ 182 (525)
Q Consensus 172 ------a~~~~~~l~~~ 182 (525)
|...++.||+-
T Consensus 630 ~mlrttaikVirhlgvv 646 (1435)
T KOG0370|consen 630 QMLRTTAIKVIRHLGVV 646 (1435)
T ss_pred HHHHhcchhheeccCCc
Confidence 44566777754
No 116
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=95.73 E-value=0.062 Score=58.70 Aligned_cols=153 Identities=11% Similarity=0.114 Sum_probs=83.7
Q ss_pred EEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhc
Q psy7785 305 GCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSF 384 (525)
Q Consensus 305 aIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~ 384 (525)
-.|.|+|-.++..+-++.+.|... +=+..+.+.+.. ... ..| -.+...+........-.+.|++++++
T Consensus 8 vLi~~~geia~~ii~aa~~lG~~~---v~~~s~~d~~~~--~~~--~aD----~~~~i~p~~~~~~y~d~~~i~~~a~~- 75 (467)
T PRK12833 8 VLVANRGEIAVRIIRAARELGMRT---VAACSDADRDSL--AAR--MAD----EAVHIGPSHAAKSYLNPAAILAAARQ- 75 (467)
T ss_pred EEEECCcHHHHHHHHHHHHcCCeE---EEEECCCCCCCh--hHH--hCC----EEEecCCCCccccccCHHHHHHHHHH-
Confidence 457788889999999999999852 111111111100 111 122 22211111111111112456666665
Q ss_pred CCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe-
Q psy7785 385 KLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL- 461 (525)
Q Consensus 385 ~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv- 461 (525)
.+.-.+....|. +.....+.+.+.|+++. ....+++..+. +-...+++|.++|||+
T Consensus 76 -~~~daI~pg~g~lsE~~~~~~~~e~~gi~~i--gps~~ai~~~~------------------DK~~~r~~l~~~GIp~~ 134 (467)
T PRK12833 76 -CGADAIHPGYGFLSENAAFAEAVEAAGLIFV--GPDAQTIRTMG------------------DKARARRTARRAGVPTV 134 (467)
T ss_pred -hCCCEEEECCCccccCHHHHHHHHHcCCCcc--CCCHHHHHHhc------------------CHHHHHHHHHHcCCCCC
Confidence 333233322221 12233456778899866 43344444432 2346899999999998
Q ss_pred --E--EEcChhHHHHHHHHhhhcCCCCcEEEEEecCCh
Q psy7785 462 --I--FASDLDEAASLVNACKSFKLSIPLVVRLEGTNV 495 (525)
Q Consensus 462 --~--lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~ 495 (525)
. ...+.+++.+ .++++ |||||+|-....-
T Consensus 135 p~~~~~v~~~~e~~~---~~~~i--gyPvvvKp~~ggg 167 (467)
T PRK12833 135 PGSDGVVASLDAALE---VAARI--GYPLMIKAAAGGG 167 (467)
T ss_pred CCcCcCcCCHHHHHH---HHHHh--CCCEEEEECCCCC
Confidence 2 6678888877 45664 9999999766543
No 117
>PLN02257 phosphoribosylamine--glycine ligase
Probab=95.63 E-value=0.052 Score=58.75 Aligned_cols=68 Identities=25% Similarity=0.226 Sum_probs=48.5
Q ss_pred HHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHh
Q psy7785 401 EGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNAC 477 (525)
Q Consensus 401 ~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa 477 (525)
...+.|++.|+|+| ....++++.. .+-..+|++|+.+|||+ ..+.+.+++.+ .+
T Consensus 77 ~~~d~l~~~Gi~~~--Gps~~aa~l~------------------~dK~~~K~~l~~~GIptp~~~~~~~~~e~~~---~~ 133 (434)
T PLN02257 77 GLADDLVKAGIPTF--GPSAEAAALE------------------GSKNFMKDLCDKYKIPTAKYETFTDPAAAKK---YI 133 (434)
T ss_pred HHHHHHHHCCCCEE--CChHHHHHHH------------------cCHHHHHHHHHHcCCCCCCeEEeCCHHHHHH---HH
Confidence 34567888999987 4333333221 12346899999999999 77889998876 45
Q ss_pred hhcCCCCcEEEEEecC
Q psy7785 478 KSFKLSIPLVVRLEGT 493 (525)
Q Consensus 478 ~~~~~G~PVVlKi~~~ 493 (525)
+++ |||+|+|-.+.
T Consensus 134 ~~~--g~PvVVKp~~~ 147 (434)
T PLN02257 134 KEQ--GAPIVVKADGL 147 (434)
T ss_pred HHc--CCCEEEEcCCC
Confidence 564 99999998763
No 118
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=95.56 E-value=0.065 Score=55.75 Aligned_cols=93 Identities=14% Similarity=0.234 Sum_probs=65.0
Q ss_pred HhhhhhCCCCCCCccccCCHHHHHHHHHhcCC--CcEEEEEeeccccCCCCCccCCCcceEEEeC-CcccHHHHHH----
Q psy7785 14 YLVKPVSTVHSTDKVCLEDARTATNILKDLNF--KEYVIKAQILAGGRGLGHFDNGFKSGVHFTN-NVQDIPPILE---- 86 (525)
Q Consensus 14 ~~~k~~~GIpvp~~~~~~~~eea~~~a~~lg~--~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~-~~eea~~a~~---- 86 (525)
|+..++.|||+|++.+++|.+|.+.+.+++++ .|+.+|+..-.+|+ |.++-. +.++.....+
T Consensus 112 y~~~~~~~ipvp~~~~v~t~~el~~a~~~l~~~~~~~CvKP~~g~gg~-----------GFr~l~~~~~~l~~l~~~~~~ 180 (329)
T PF15632_consen 112 YEFMEANGIPVPPYWRVRTADELKAAYEELRFPGQPLCVKPAVGIGGR-----------GFRVLDESRDELDALFEPDSR 180 (329)
T ss_pred HHHHHhCCCCCCCEEEeCCHHHHHHHHHhcCCCCceEEEecccCCCcc-----------eEEEEccCcchHHHhcCCCcc
Confidence 44444789999999999999999999999876 25999996544443 444443 3333332222
Q ss_pred --------HHhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcC
Q psy7785 87 --------KMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDR 128 (525)
Q Consensus 87 --------~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~ 128 (525)
+.+.. ......++|+|+++ |.|++|=+..+.
T Consensus 181 ~i~~~~~~~~l~~----------~~~~~~llvMeyL~-G~EySVD~l~~~ 219 (329)
T PF15632_consen 181 RISLDELLAALQR----------SEEFPPLLVMEYLP-GPEYSVDCLADE 219 (329)
T ss_pred eeCHHHHHHHHhc----------cCCCCCcEEecCCC-CCeEEEEEEecC
Confidence 22211 12357799999998 899999999886
No 119
>KOG1255|consensus
Probab=95.55 E-value=0.12 Score=50.79 Aligned_cols=126 Identities=15% Similarity=0.202 Sum_probs=84.1
Q ss_pred ccCCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHhcCCCccEEEEEe-cccccChHHHHHH
Q psy7785 299 GMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEE-SIIQAFRIISSDSNVKCILVNV-FGGIVNCATIAKG 376 (525)
Q Consensus 299 ~~~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~-~~~~al~~ll~dp~vd~vlv~~-~~~~~~~~~ia~~ 376 (525)
...+.|+|++-||-+---+.-.--..|+-..--+-++|++.+- .|-+||+..++||+..+|++.- .+|.. .++.|+-
T Consensus 174 hk~G~IGIVSRSGTLTYEaVhQTT~vglGQslcvGiGGDpFnGT~FID~L~vFl~D~~t~GIiliGEIGG~A-Ee~AA~f 252 (329)
T KOG1255|consen 174 HKRGKIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTNFIDCLEVFLEDPETEGIILIGEIGGSA-EEEAAEF 252 (329)
T ss_pred ccCCeeEEEecCCceeehhhhhhccccccceeEEeecCCCCCCccHHHHHHHHhcCcccceEEEEeccCChh-hHHHHHH
Confidence 3457999999999776666555556677666778889988764 4999999999999999988742 23322 2333444
Q ss_pred HHHHHHhcCCCCcEEEEeCCc--------------------chHHHHHHHhhCCCCccccCCHHHHHHHHHH
Q psy7785 377 LVNACKSFKLSIPLVVRLEGT--------------------NVQEGKRILDESKLPLIFASDLDEAASLVNA 428 (525)
Q Consensus 377 i~~a~~~~~~~kPivv~~~g~--------------------~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~ 428 (525)
+-+.... ...|||+....|. ...+-...|+++||-+. ++|..-=.++..
T Consensus 253 lk~~nSg-~~~kPVvsFIAG~tAppGrRMGHaGAIisGgkg~A~dKi~aL~~agV~vt--~sPa~lG~~~~~ 321 (329)
T KOG1255|consen 253 LKEYNSG-STAKPVVSFIAGVTAPPGRRMGHAGAIISGGKGTAKDKIAALRDAGVVVT--ESPAKLGSAMLE 321 (329)
T ss_pred HHHhccC-CCCCceeEEeecccCCCcccccccceeeeCCCccHHHHHHHHHhcCeEEE--cCHHHHHHHHHH
Confidence 3333221 1469997543221 23344667888999888 888776665543
No 120
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=95.49 E-value=0.12 Score=55.43 Aligned_cols=67 Identities=25% Similarity=0.321 Sum_probs=48.2
Q ss_pred HHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhh
Q psy7785 402 GKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACK 478 (525)
Q Consensus 402 ~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~ 478 (525)
..+.+++.|+|++ ....++++.. .+-...+++|+++|||+ ..+.+.+++.+ .++
T Consensus 80 ~~~~l~~~gi~~~--g~~~~~~~~~------------------~dK~~~k~~l~~~gIp~p~~~~~~~~~~~~~---~~~ 136 (423)
T TIGR00877 80 LVDALEEAGIPVF--GPTKEAAQLE------------------GSKAFAKDFMKRYGIPTAEYEVFTDPEEALS---YIQ 136 (423)
T ss_pred HHHHHHHCCCeEE--CCCHHHHHHH------------------CCHHHHHHHHHHCCCCCCCeEEECCHHHHHH---HHH
Confidence 3567888999987 4333333332 12346889999999999 77889998877 455
Q ss_pred hcCCCCc-EEEEEecC
Q psy7785 479 SFKLSIP-LVVRLEGT 493 (525)
Q Consensus 479 ~~~~G~P-VVlKi~~~ 493 (525)
++ ||| +|+|-...
T Consensus 137 ~~--g~P~~VvKp~~~ 150 (423)
T TIGR00877 137 EK--GAPAIVVKADGL 150 (423)
T ss_pred hc--CCCeEEEEECCC
Confidence 64 999 99998643
No 121
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=95.22 E-value=0.081 Score=56.84 Aligned_cols=66 Identities=21% Similarity=0.275 Sum_probs=47.0
Q ss_pred HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS 479 (525)
Q Consensus 403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~ 479 (525)
...+++.|+|++ ....++++.. .+-...+++|+++|||+ ..+.+.+++.+ .+++
T Consensus 79 ~~~l~~~gi~~~--g~~~~~~~~~------------------~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~---~~~~ 135 (420)
T PRK00885 79 VDAFRAAGLPIF--GPTKAAAQLE------------------GSKAFAKDFMARYGIPTAAYETFTDAEEALA---YLDE 135 (420)
T ss_pred HHHHHHCCCcEE--CcCHHHHHHH------------------cCHHHHHHHHHHcCCCCCCeEEeCCHHHHHH---HHHH
Confidence 457788999987 4333333222 12346889999999999 77889998877 3456
Q ss_pred cCCCCcEEEEEecC
Q psy7785 480 FKLSIPLVVRLEGT 493 (525)
Q Consensus 480 ~~~G~PVVlKi~~~ 493 (525)
+ |||||+|=.+.
T Consensus 136 ~--~~P~VvKP~~~ 147 (420)
T PRK00885 136 K--GAPIVVKADGL 147 (420)
T ss_pred c--CCCEEEEeCCC
Confidence 3 99999998653
No 122
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=95.17 E-value=0.14 Score=55.54 Aligned_cols=153 Identities=13% Similarity=0.119 Sum_probs=81.4
Q ss_pred cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHH
Q psy7785 303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACK 382 (525)
Q Consensus 303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~ 382 (525)
+|.|+ ++|=.++..+-++.+.|.... .++...+.. +...-+. |-.++..+....+...-.+.|.+.++
T Consensus 4 ~iLi~-g~g~~a~~i~~aa~~~G~~vv-~~~~~~d~~------a~~~~~a----d~~~~~~~~~~~~~y~d~~~l~~~a~ 71 (451)
T PRK08591 4 KILIA-NRGEIALRIIRACKELGIKTV-AVHSTADRD------ALHVQLA----DEAVCIGPAPSKKSYLNIPAIISAAE 71 (451)
T ss_pred eEEEE-CCCHHHHHHHHHHHHcCCeEE-EEcChhhcc------CCCHhHC----CEEEEeCCCCcccccCCHHHHHHHHH
Confidence 56666 788889999999999998521 011111110 0000111 22221111100001111245566555
Q ss_pred hcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCC
Q psy7785 383 SFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLP 460 (525)
Q Consensus 383 ~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIp 460 (525)
+. +.-.++...|. ......+.+++.|+|++ ....+++..+. +-...+++|+++|||
T Consensus 72 ~~--~id~I~p~~~~~~e~~~~~~~~e~~gi~~~--g~~~~~~~~~~------------------DK~~~r~~l~~~gIp 129 (451)
T PRK08591 72 IT--GADAIHPGYGFLSENADFAEICEDSGFTFI--GPSAETIRLMG------------------DKVTAKATMKKAGVP 129 (451)
T ss_pred Hh--CCCEEEECCCccccCHHHHHHHHHCCCceE--CcCHHHHHHhc------------------CHHHHHHHHHHcCCC
Confidence 52 22233322221 12234567888999977 43334443332 223578999999999
Q ss_pred e-----EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785 461 L-----IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN 494 (525)
Q Consensus 461 v-----~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~ 494 (525)
+ ..+.+.+++.+ .++++ |||||+|-....
T Consensus 130 ~pp~~~~~v~~~~~~~~---~~~~~--g~PvvvKP~~g~ 163 (451)
T PRK08591 130 VVPGSDGPVDDEEEALA---IAKEI--GYPVIIKATAGG 163 (451)
T ss_pred CCCCcccccCCHHHHHH---HHHHc--CCCEEEEECCCC
Confidence 8 25678888877 45564 999999975543
No 123
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=95.13 E-value=0.11 Score=56.40 Aligned_cols=75 Identities=16% Similarity=0.067 Sum_probs=49.7
Q ss_pred HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe----EEEcChhHHHHHHHHhh
Q psy7785 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL----IFASDLDEAASLVNACK 478 (525)
Q Consensus 403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv----~lA~s~deAv~~~~aa~ 478 (525)
...|.+.|+|+| -...++++.- .+-..++++|..+|||. ..+.+.+|+... +.
T Consensus 82 ~~~l~~~Gi~v~--gps~~~a~~e------------------~dK~~~k~~l~~~gIptp~~~~~~~~~~e~~~~---~~ 138 (435)
T PRK06395 82 VNNLLKRGIKVA--SPTMEAAMIE------------------TSKMFMRYLMERHNIPGNINFNACFSEKDAARD---YI 138 (435)
T ss_pred HHHHHHCCCcEE--CCCHHHHHHh------------------hCHHHHHHHHHHCCcCCCcccceeCChHHHHHH---HH
Confidence 457778899998 4434432221 12346899999999997 256577777773 44
Q ss_pred hcCCCCcEEEEEecCChHHHHHhh
Q psy7785 479 SFKLSIPLVVRLEGTNVQEGKRIL 502 (525)
Q Consensus 479 ~~~~G~PVVlKi~~~~~~~~~~~~ 502 (525)
++ |||||+|-.+..-.+|-.+.
T Consensus 139 ~~--~~PvVVKP~~~sggkGV~v~ 160 (435)
T PRK06395 139 TS--MKDVAVKPIGLTGGKGVKVT 160 (435)
T ss_pred hh--CCCEEEEeCCCCCCCCeEEe
Confidence 53 99999998775555444444
No 124
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=95.08 E-value=0.19 Score=60.93 Aligned_cols=150 Identities=13% Similarity=0.152 Sum_probs=82.4
Q ss_pred EEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc-ccChHHHHHHHHHHHHhc
Q psy7785 306 CLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG-IVNCATIAKGLVNACKSF 384 (525)
Q Consensus 306 IitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~-~~~~~~ia~~i~~a~~~~ 384 (525)
.|.|+|-.++..+-++.+.|... --++.-.+.. +...-..| -.++ +..+ ......-.+.|.+++++.
T Consensus 5 LI~g~Geia~~iiraak~lGi~~-v~v~sd~d~~------a~~v~~AD----~~v~-l~~~~~~~sy~d~e~Il~~a~~~ 72 (1201)
T TIGR02712 5 LIANRGEIAVRIIRTLRRMGIRS-VAVYSDADAA------SQHVLDAD----EAVC-LGGAPAAESYLDIDKILAAAKKT 72 (1201)
T ss_pred EEECCCHHHHHHHHHHHHcCCeE-EEEECCCCCC------ccchhhCC----EEEE-cCCCCcccCCCCHHHHHHHHHHH
Confidence 46788889999999999999851 1111111111 11111122 2221 1111 111111134566666652
Q ss_pred CCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe-
Q psy7785 385 KLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL- 461 (525)
Q Consensus 385 ~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv- 461 (525)
+.-.++...|. +.......+++.|++++ ....++++.+. +-..+|++|+++|||+
T Consensus 73 --~idaIiPG~gflsE~~~~a~~~e~~Gi~~i--Gps~ea~~~~~------------------DK~~ar~ll~~~GVPt~ 130 (1201)
T TIGR02712 73 --GAQAIHPGYGFLSENAAFAEACEAAGIVFV--GPTPEQIRKFG------------------LKHTARELAEAAGVPLL 130 (1201)
T ss_pred --CCCEEEeCCcccccCHHHHHHHHHcCCcEE--CCCHHHHHHhc------------------CHHHHHHHHHHCCCCCC
Confidence 22222221121 12234567888999876 33334443331 2346899999999997
Q ss_pred ---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785 462 ---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN 494 (525)
Q Consensus 462 ---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~ 494 (525)
.++.|.+||.+ .++++ |||||+|-....
T Consensus 131 p~~~lv~s~dea~~---~a~~i--gyPvVVKP~~gg 161 (1201)
T TIGR02712 131 PGTGLLSSLDEALE---AAKEI--GYPVMLKSTAGG 161 (1201)
T ss_pred CceeecCCHHHHHH---HHHhc--CCeEEEEECCCC
Confidence 46789999887 45664 999999976654
No 125
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=94.93 E-value=0.095 Score=53.50 Aligned_cols=94 Identities=12% Similarity=0.206 Sum_probs=71.9
Q ss_pred hhhhCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccc
Q psy7785 16 VKPVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT 95 (525)
Q Consensus 16 ~k~~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~ 95 (525)
..++.||+.|+ ..++|||. +. ||+||.....+|| |-.++.|++|..+.+++++.+...
T Consensus 131 lLekAgi~~P~--~~~~PeeI-------dr-~VIVK~pgAkggR-----------GyFiA~s~eef~ek~e~l~~~gvi- 188 (361)
T COG1759 131 LLEKAGLRIPK--KYKSPEEI-------DR-PVIVKLPGAKGGR-----------GYFIASSPEEFYEKAERLLKRGVI- 188 (361)
T ss_pred HHHHcCCCCCc--ccCChHHc-------CC-ceEEecCCccCCc-----------eEEEEcCHHHHHHHHHHHHHcCCc-
Confidence 33389999997 67888864 63 9999998776644 677889999999999999876442
Q ss_pred ccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 96 KQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 96 ~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
..+..+...|||++- |.=+|+.....|.. +-+=++|
T Consensus 189 -----~~edlkna~IeEYv~-G~~f~~~yFyS~i~-~~lEl~g 224 (361)
T COG1759 189 -----TEEDLKNARIEEYVV-GAPFYFHYFYSPIK-DRLELLG 224 (361)
T ss_pred -----chhhhhhceeeEEee-ccceeeeeeecccc-CceeEee
Confidence 223468899999985 67788888888887 4455555
No 126
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=94.58 E-value=0.085 Score=54.92 Aligned_cols=75 Identities=16% Similarity=0.213 Sum_probs=49.7
Q ss_pred CCCCCccccCCHHHHH---HHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 22 VHSTDKVCLEDARTAT---NILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 22 Ipvp~~~~~~~~eea~---~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
||+|++.++.+.+.+. ....++|| |+|+|+..-+|. .+ .-++.+..+.+++.. +
T Consensus 127 i~~P~t~v~~~~~~al~~~~~~~~l~~-P~V~KPl~g~Gs-s~-------gh~m~lv~~~~~L~~---------l----- 183 (328)
T PLN02941 127 VGVPKQLVVYDDESSIPDAVALAGLKF-PLVAKPLVADGS-AK-------SHKMSLAYDQEGLSK---------L----- 183 (328)
T ss_pred CCCCCEEEEcCHHHHHHHHHHHhcCCC-CEEEeecccCCC-cc-------ccceEEecCHHHHHh---------c-----
Confidence 9999999999987655 44578897 999999655321 11 336777777655443 1
Q ss_pred CCCCcccCeEEEEeeeCCc-eeEEEEEE
Q psy7785 99 PKTGINVNKVMVAKSVNIT-RETYFCIV 125 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~-~E~~vgv~ 125 (525)
. ..+++|||++++ +-+-+-+.
T Consensus 184 --~----~p~~lQEfVnh~g~d~RVfVv 205 (328)
T PLN02941 184 --E----PPLVLQEFVNHGGVLFKVYVV 205 (328)
T ss_pred --C----CcEEEEEecCCCCEEEEEEEE
Confidence 0 128999999764 33333333
No 127
>KOG0368|consensus
Probab=94.08 E-value=0.49 Score=56.80 Aligned_cols=84 Identities=19% Similarity=0.423 Sum_probs=65.5
Q ss_pred ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccCCCCCcccCeE
Q psy7785 29 CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQTPKTGINVNKV 108 (525)
Q Consensus 29 ~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~~~~g~~~~~v 108 (525)
++++++|..++++.+|| |+-+|+- .||=|| |++-+.+.++..+.+++.... + + ...+
T Consensus 224 cv~~~eegLeaae~IGf-PvMIKAS--EGGGGK---------GIRkv~n~ddF~~lf~qv~~E-v-------P---GSPI 280 (2196)
T KOG0368|consen 224 CVRNVEEGLEAAEKIGF-PVMIKAS--EGGGGK---------GIRKVENEDDFKALFKQVQNE-V-------P---GSPI 280 (2196)
T ss_pred hcCCHHHHHHHHHhcCC-ceEEEec--cCCCCc---------ceeeccchHHHHHHHHHHHhh-C-------C---CCce
Confidence 56899999999999998 9999994 334377 888888999999999988653 1 2 3457
Q ss_pred EEEeeeCCceeEEEEEEEcCCCCccEEEe
Q psy7785 109 MVAKSVNITRETYFCIVQDRLHNGPVVII 137 (525)
Q Consensus 109 lVee~~~~~~E~~vgv~~D~~f~gpvi~~ 137 (525)
+|.+-+.+.+-+-+-+.-|.- |-+|.+
T Consensus 281 FlMK~a~~ARHlEVQlLaDqY--Gn~IsL 307 (2196)
T KOG0368|consen 281 FLMKLADQARHLEVQLLADQY--GNVISL 307 (2196)
T ss_pred eeeecccCcceeeeehhhhhc--CCEeEe
Confidence 888888888888888888863 555543
No 128
>PRK12458 glutathione synthetase; Provisional
Probab=93.92 E-value=0.27 Score=51.43 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=51.3
Q ss_pred CCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCccc--HHHHHHHHhccccccccCC
Q psy7785 22 VHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQD--IPPILEKMIGHKLITKQTP 99 (525)
Q Consensus 22 Ipvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~ee--a~~a~~~l~~~~~~~~~~~ 99 (525)
+++|++.+..+.+++.++.++.|++|+|+|+..-.+|+ ||.+..+.++ +...++.+..
T Consensus 139 ~~vP~T~v~~~~~~~~~~~~~~~~~pvVvKPl~G~gG~-----------gV~~v~~~~~~~~~~ile~~~~--------- 198 (338)
T PRK12458 139 EVRPTTHISRNKEYIREFLEESPGDKMILKPLQGSGGQ-----------GVFLIEKSAQSNLNQILEFYSG--------- 198 (338)
T ss_pred CCCCCEEEeCCHHHHHHHHHHcCCCeEEEEECCCCCcc-----------CeEEEecCChhhHHHHHHHHhh---------
Confidence 68899999999999999999997645999996544432 5666544332 3333333211
Q ss_pred CCCcccCeEEEEeeeCC--ceeEEEEE
Q psy7785 100 KTGINVNKVMVAKSVNI--TRETYFCI 124 (525)
Q Consensus 100 ~~g~~~~~vlVee~~~~--~~E~~vgv 124 (525)
-..++||+|++. ..++.+-+
T Consensus 199 -----~~~~ivQeyI~~~~~gDiRv~v 220 (338)
T PRK12458 199 -----DGYVIAQEYLPGAEEGDVRILL 220 (338)
T ss_pred -----CCCEEEEEcccCCCCCCEEEEE
Confidence 125899999973 34555554
No 129
>PRK05586 biotin carboxylase; Validated
Probab=93.90 E-value=0.45 Score=51.61 Aligned_cols=151 Identities=14% Similarity=0.140 Sum_probs=79.2
Q ss_pred cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHH--HHHHHHH
Q psy7785 303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATI--AKGLVNA 380 (525)
Q Consensus 303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~i--a~~i~~a 380 (525)
+|+| -|+|=.|++.+-++.+.|+.+ +-+..+ .+. .+...-+. |-.++..+. .+...+ .+.|+++
T Consensus 4 kvli-~g~G~~~~~~~~aa~~lG~~~---v~v~~~--~d~--~a~~~~~a----D~~~~~~~~--~~~~~y~~~~~i~~~ 69 (447)
T PRK05586 4 KILI-ANRGEIAVRIIRACREMGIET---VAVYSE--ADK--DALHVQLA----DEAVCIGPA--SSKDSYLNIQNIISA 69 (447)
T ss_pred eEEE-ECCcHHHHHHHHHHHHcCCcE---EEEcCh--Hhc--cCcchhhC----CEEEEeCCC--ChhhcccCHHHHHHH
Confidence 4555 467779999999999999862 111100 010 00111112 222221111 111111 2456666
Q ss_pred HHhcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCC
Q psy7785 381 CKSFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESK 458 (525)
Q Consensus 381 ~~~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayG 458 (525)
+... +.-.+....|. +.....+.++..|+|++ ....+++..+. +-...+++|+++|
T Consensus 70 ~~~~--~~d~i~p~~~~~~E~~~~a~~~~~~gi~~~--g~s~~~~~~~~------------------DK~~~k~~l~~~G 127 (447)
T PRK05586 70 TVLT--GAQAIHPGFGFLSENSKFAKMCKECNIVFI--GPDSETIELMG------------------NKSNAREIMIKAG 127 (447)
T ss_pred HHHc--CCCEEEcCccccccCHHHHHHHHHCCCcEE--CcCHHHHHhhC------------------CHHHHHHHHHHCC
Confidence 6652 22223221221 11233446677899866 33333333321 2346889999999
Q ss_pred CCe--E---EEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785 459 LPL--I---FASDLDEAASLVNACKSFKLSIPLVVRLEGTN 494 (525)
Q Consensus 459 Ipv--~---lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~ 494 (525)
||+ . .+.+.+++.+ +++++ |||||+|-....
T Consensus 128 Ipvp~~~~~~~~~~~e~~~---~~~~i--gyPvvvKP~~gg 163 (447)
T PRK05586 128 VPVVPGSEGEIENEEEALE---IAKEI--GYPVMVKASAGG 163 (447)
T ss_pred CCCCCCcccccCCHHHHHH---HHHHc--CCCEEEEECCCC
Confidence 999 2 4678888876 45564 999999965544
No 130
>PRK08462 biotin carboxylase; Validated
Probab=93.85 E-value=0.23 Score=53.72 Aligned_cols=150 Identities=16% Similarity=0.224 Sum_probs=82.2
Q ss_pred cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHH--HHHHHHH
Q psy7785 303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATI--AKGLVNA 380 (525)
Q Consensus 303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~i--a~~i~~a 380 (525)
+|.| -|+|=.++-.+.+|.+.|..+- =++...+.+ +.-.-..|. .+.+ ..+. ....+ .+.|+++
T Consensus 6 ~ili-~~~g~~~~~~~~~~~~~G~~~v-~~~~~~d~~------~~~~~~ad~---~~~~--~~~~-~~~~y~~~~~l~~~ 71 (445)
T PRK08462 6 RILI-ANRGEIALRAIRTIQEMGKEAI-AIYSTADKD------ALYLKYADA---KICI--GGAK-SSESYLNIPAIISA 71 (445)
T ss_pred EEEE-ECCcHHHHHHHHHHHHcCCCEE-EEechhhcC------CchhhhCCE---EEEe--CCCc-hhcccCCHHHHHHH
Confidence 4544 5666679999999999998630 000001110 010111221 1111 1111 11122 4577777
Q ss_pred HHhcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCC
Q psy7785 381 CKSFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESK 458 (525)
Q Consensus 381 ~~~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayG 458 (525)
+++. +.-.++...|. ......+.++..|+|++ ....+++..+. +-...+++|++.|
T Consensus 72 ~~~~--~~D~i~pg~g~lse~~~~a~~~e~~Gi~~~--g~~~~~~~~~~------------------dK~~~r~~l~~~g 129 (445)
T PRK08462 72 AEIF--EADAIFPGYGFLSENQNFVEICSHHNIKFI--GPSVEVMALMS------------------DKSKAKEVMKRAG 129 (445)
T ss_pred HHHc--CCCEEEECCCccccCHHHHHHHHHCCCeEE--CcCHHHHHHhC------------------CHHHHHHHHHHCC
Confidence 7763 33334333332 12233457788999987 44444444331 2346889999999
Q ss_pred CCe-----EEEcChhHHHHHHHHhhhcCCCCcEEEEEecC
Q psy7785 459 LPL-----IFASDLDEAASLVNACKSFKLSIPLVVRLEGT 493 (525)
Q Consensus 459 Ipv-----~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~ 493 (525)
||+ ..+.+.+++.. +++++ |||||+|=...
T Consensus 130 Ip~pp~~~~~~~~~~~~~~---~~~~~--g~PvvvKP~~g 164 (445)
T PRK08462 130 VPVIPGSDGALKSYEEAKK---IAKEI--GYPVILKAAAG 164 (445)
T ss_pred CCCCCCcccccCCHHHHHH---HHHHc--CCCEEEEeCCC
Confidence 998 24678888877 45564 99999996553
No 131
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=93.41 E-value=0.16 Score=48.82 Aligned_cols=40 Identities=20% Similarity=0.345 Sum_probs=32.6
Q ss_pred HHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcE-EEEEecC
Q psy7785 449 EGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPL-VVRLEGT 493 (525)
Q Consensus 449 eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PV-VlKi~~~ 493 (525)
-+|+++..||||. ..++|.++|.+. .++. ++|+ |+|..|.
T Consensus 5 faK~fm~~~~IPTa~~~~f~~~~~A~~~---l~~~--~~p~~ViKadGl 48 (194)
T PF01071_consen 5 FAKEFMKRYGIPTAKYKVFTDYEEALEY---LEEQ--GYPYVVIKADGL 48 (194)
T ss_dssp HHHHHHHHTT-SB--EEEESSHHHHHHH---HHHH--SSSEEEEEESSS
T ss_pred HHHHHHHHcCCCCCCeeEECCHHHHHHH---HHhc--CCCceEEccCCC
Confidence 5899999999999 889999999995 4443 7898 9997664
No 132
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=93.32 E-value=0.93 Score=51.61 Aligned_cols=130 Identities=21% Similarity=0.289 Sum_probs=87.8
Q ss_pred hCCCCCCCcc--ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDKV--CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~--~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
+.|+||-++. ...+.+|+.+.+++.|| ||.+|+-.--||| |-++..+.+++.+++++--+....
T Consensus 131 ~agvPvipgt~~~~~~~ee~~~fa~~~gy-PvmiKA~~GGGGR-----------GMR~vr~~~~l~~~~~~AksEAka-- 196 (1149)
T COG1038 131 KAGVPVIPGTDGPIETIEEALEFAEEYGY-PVMIKAAAGGGGR-----------GMRVVRSEADLAEAFERAKSEAKA-- 196 (1149)
T ss_pred HcCCCccCCCCCCcccHHHHHHHHHhcCC-cEEEEEccCCCcc-----------ceeeecCHHHHHHHHHHHHHHHHH--
Confidence 7899985543 45679999999999998 9999996433433 677888888888888887554321
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEE-EecCCCCcccccccccCCCeEEEEecCCCCCCCHHHHHHH
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVV-IISPSGGTDIENVAAKTPHLVKTIPIDVHQGITESLAQDI 175 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi-~~g~~GGv~iE~~~~~~~~~~~~~~l~p~~~l~~~~a~~~ 175 (525)
..| ...|+||+++...+-+-+-+.-|.. |-+| +|- . |--+-+ .+ . +.+-+.|...|+++.-.++
T Consensus 197 ---AFG--~~eVyvEk~ve~pkHIEVQiLgD~~--GnvvHLfE-R---DCSvQR-Rh-Q--KVVE~APa~~L~~~~R~~i 261 (1149)
T COG1038 197 ---AFG--NDEVYVEKLVENPKHIEVQILGDTH--GNVVHLFE-R---DCSVQR-RH-Q--KVVEVAPAPYLSPELRDEI 261 (1149)
T ss_pred ---hcC--CCcEEhhhhhcCcceeEEEEeecCC--CCEEEEee-c---ccchhh-cc-c--eeEEecCCCCCCHHHHHHH
Confidence 123 3679999999877777788887765 3443 333 1 122222 22 1 2356788888998776666
Q ss_pred HH
Q psy7785 176 AD 177 (525)
Q Consensus 176 ~~ 177 (525)
..
T Consensus 262 c~ 263 (1149)
T COG1038 262 CD 263 (1149)
T ss_pred HH
Confidence 54
No 133
>PRK08463 acetyl-CoA carboxylase subunit A; Validated
Probab=92.88 E-value=0.35 Score=53.01 Aligned_cols=156 Identities=11% Similarity=0.133 Sum_probs=81.2
Q ss_pred EEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcC
Q psy7785 306 CLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFK 385 (525)
Q Consensus 306 IitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~ 385 (525)
.|.|+|-.++..+-+|.+.|...- -++...+.. +...-..| -.++ +.........-.+.|++++++.
T Consensus 6 Li~~~ge~a~~~i~aa~~lG~~~v-~v~~~~d~~------~~~~~~AD----~~~~-i~~~~~~~y~d~~~i~~~a~~~- 72 (478)
T PRK08463 6 LIANRGEIAVRVIRACRDLHIKSV-AIYTEPDRE------CLHVKIAD----EAYR-IGTDPIKGYLDVKRIVEIAKAC- 72 (478)
T ss_pred EEECCCHHHHHHHHHHHHcCCeEE-EEECCCccC------CcchhhcC----EEEE-cCCCchhcccCHHHHHHHHHHh-
Confidence 456777889999999999998520 011101110 11111112 1111 1111000001123555666652
Q ss_pred CCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe--
Q psy7785 386 LSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL-- 461 (525)
Q Consensus 386 ~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv-- 461 (525)
+.-.++...|. ......+.+.+.|+++. ....+++..+. +-...++++.++|||+
T Consensus 73 -~iDaI~pg~g~lsE~~~~a~~~e~~Gi~~i--Gps~~~i~~~~------------------DK~~~k~~l~~~gIpvpp 131 (478)
T PRK08463 73 -GADAIHPGYGFLSENYEFAKAVEDAGIIFI--GPKSEVIRKMG------------------NKNIARYLMKKNGIPIVP 131 (478)
T ss_pred -CCCEEEECCCccccCHHHHHHHHHCCCcee--cCCHHHHHhhC------------------cHHHHHHHHHHcCCCCCC
Confidence 22223222221 22334567788999876 33333343331 2346899999999998
Q ss_pred -EE---EcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHH
Q psy7785 462 -IF---ASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKR 500 (525)
Q Consensus 462 -~l---A~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~ 500 (525)
.. ..+.+++.+ .++++ |||||+|-....-..|.+
T Consensus 132 ~~~~~~~~~~~~~~~---~~~~i--gyPvvvKP~~ggGg~Gv~ 169 (478)
T PRK08463 132 GTEKLNSESMEEIKI---FARKI--GYPVILKASGGGGGRGIR 169 (478)
T ss_pred CccccCCCCHHHHHH---HHHHh--CCCEEEEeCCCCCCCceE
Confidence 22 246777776 45564 999999998765444433
No 134
>KOG0369|consensus
Probab=92.84 E-value=0.32 Score=54.07 Aligned_cols=97 Identities=21% Similarity=0.304 Sum_probs=71.7
Q ss_pred hCCCCCCCccc--cCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDKVC--LEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~~--~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
+.|+|+.++.= +++.+||.+++++-|+ ||++|+-.--||| |.++..+.|++++++++-.+..+..
T Consensus 157 ~agVpvVPGTpgPitt~~EA~eF~k~yG~-PvI~KAAyGGGGR-----------GmRvVr~~e~vee~f~Ra~SEA~aa- 223 (1176)
T KOG0369|consen 157 EAGVPVVPGTPGPITTVEEALEFVKEYGL-PVIIKAAYGGGGR-----------GMRVVRSGEDVEEAFQRAYSEALAA- 223 (1176)
T ss_pred HcCCCccCCCCCCcccHHHHHHHHHhcCC-cEEEeecccCCCc-----------ceEEeechhhHHHHHHHHHHHHHHh-
Confidence 68999866643 5889999999999997 9999997554444 6788889999999998877654421
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEE
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVI 136 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~ 136 (525)
.| .-.++||+|++..+-+-+-+.-|.. |-++=
T Consensus 224 ----FG--nG~~FvEkF~ekPrHIEvQllgD~~--GNvvH 255 (1176)
T KOG0369|consen 224 ----FG--NGTLFVEKFLEKPRHIEVQLLGDKH--GNVVH 255 (1176)
T ss_pred ----cC--CceeeHHhhhcCcceeEEEEecccC--CCEEE
Confidence 12 2457899999766777777776754 44443
No 135
>KOG0237|consensus
Probab=92.80 E-value=1.6 Score=48.17 Aligned_cols=118 Identities=22% Similarity=0.366 Sum_probs=71.5
Q ss_pred HHHHHhcCCCccEEEEEec-cccc--Ch---------HHHHHHHHHHHHhcCCCCcEEEEeCCcchH--HH-HHHHhhCC
Q psy7785 346 AFRIISSDSNVKCILVNVF-GGIV--NC---------ATIAKGLVNACKSFKLSIPLVVRLEGTNVQ--EG-KRILDESK 410 (525)
Q Consensus 346 al~~ll~dp~vd~vlv~~~-~~~~--~~---------~~ia~~i~~a~~~~~~~kPivv~~~g~~~~--~~-~~~L~~~G 410 (525)
....|.++|.|+.|++.-. +|.. ++ ..-.++++..+.++ +.-+| ..|++.+ .+ ...|++.|
T Consensus 17 l~wkL~qSp~v~~v~vaPGn~G~a~~~~~~~~~~dI~~~d~~ala~f~~e~--~I~lV--vvGPE~PL~~Gl~~~l~~~g 92 (788)
T KOG0237|consen 17 LAWKLKQSPKVKKVYVAPGNGGTASGDASKVPNLDISVADFEALASFCKEH--NINLV--VVGPELPLVAGLADVLRSAG 92 (788)
T ss_pred HHHHhhcCCccceEEEccCCCCcccCccccCcccccChhhHHHHHHHHHHc--ceeEE--EECCchhhhhhhhhhhhccC
Confidence 3455778999999888421 1211 11 12346777777772 33333 3454211 11 45889999
Q ss_pred CCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCC-CcE
Q psy7785 411 LPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLS-IPL 486 (525)
Q Consensus 411 vpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G-~PV 486 (525)
||+| .-...|+ .|- .+-.-+|++...||||. ...++.++|...-+.+ + .++
T Consensus 93 i~~F--GPs~~aA-qlE-----------------~sK~fsK~fm~r~~IPTA~y~~ft~~e~a~sfi~~~-----~~~~~ 147 (788)
T KOG0237|consen 93 IPCF--GPSKQAA-QLE-----------------ASKNFSKDFMHRHNIPTAKYKTFTDPEEAKSFIQSA-----TDKAL 147 (788)
T ss_pred ccee--CchHHHH-Hhh-----------------hhHHHHHHHHHhcCCCcceeeeeCCHHHHHHHHHhC-----CCcce
Confidence 9999 2222221 111 12235899999999999 7788899998854432 4 579
Q ss_pred EEEEec
Q psy7785 487 VVRLEG 492 (525)
Q Consensus 487 VlKi~~ 492 (525)
|+|..|
T Consensus 148 ViKAdG 153 (788)
T KOG0237|consen 148 VIKADG 153 (788)
T ss_pred EEeecc
Confidence 999877
No 136
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=92.30 E-value=4.1 Score=42.87 Aligned_cols=137 Identities=16% Similarity=0.181 Sum_probs=79.7
Q ss_pred cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHH
Q psy7785 303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACK 382 (525)
Q Consensus 303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~ 382 (525)
.||||. ||=+|-|++-+....|.+. -++|-..+...-++.+ -+++. ...+. +++.+...
T Consensus 3 tvgIlG-GGQLgrMm~~aa~~lG~~v-~vLdp~~~~PA~~va~------------~~i~~---~~dD~----~al~ela~ 61 (375)
T COG0026 3 TVGILG-GGQLGRMMALAAARLGIKV-IVLDPDADAPAAQVAD------------RVIVA---AYDDP----EALRELAA 61 (375)
T ss_pred eEEEEc-CcHHHHHHHHHHHhcCCEE-EEecCCCCCchhhccc------------ceeec---CCCCH----HHHHHHHh
Confidence 577775 4559999999999999862 3444444443322211 11211 11222 23333333
Q ss_pred hcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe-
Q psy7785 383 SFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL- 461 (525)
Q Consensus 383 ~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv- 461 (525)
. + .++..-.-+-+.++...+.+. ++++ ++++- ++.... -..=|++|+..|||+
T Consensus 62 ~--~--DViT~EfE~V~~~aL~~l~~~-~~v~--p~~~~-l~~~qd------------------R~~eK~~l~~~Gi~va 115 (375)
T COG0026 62 K--C--DVITYEFENVPAEALEKLAAS-VKVF--PSPDA-LRIAQD------------------RLVEKQFLDKAGLPVA 115 (375)
T ss_pred h--C--CEEEEeeccCCHHHHHHHHhh-cCcC--CCHHH-HHHHhh------------------HHHHHHHHHHcCCCCC
Confidence 2 2 234322222245566667766 7888 66542 222211 113588999999999
Q ss_pred --EEEcChhHHHHHHHHhhhcCCCCcEEEEEe
Q psy7785 462 --IFASDLDEAASLVNACKSFKLSIPLVVRLE 491 (525)
Q Consensus 462 --~lA~s~deAv~~~~aa~~~~~G~PVVlKi~ 491 (525)
..+++.+|..+ +++++ |+|.|+|..
T Consensus 116 ~~~~v~~~~el~~---~~~~~--g~p~VlKtr 142 (375)
T COG0026 116 PFQVVDSAEELDA---AAADL--GFPAVLKTR 142 (375)
T ss_pred CeEEeCCHHHHHH---HHHHc--CCceEEEec
Confidence 88899998888 56775 999999973
No 137
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=92.25 E-value=0.059 Score=52.59 Aligned_cols=50 Identities=16% Similarity=0.325 Sum_probs=37.5
Q ss_pred HHHHHHHHCCCCe---EEE--cChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhh
Q psy7785 449 EGKRILDESKLPL---IFA--SDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILD 503 (525)
Q Consensus 449 eak~LL~ayGIpv---~lA--~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~ 503 (525)
.++++++..|+|+ ... .|.+||.+ .|+++ ||||.+|-....--.|.+++.
T Consensus 4 ~~~~~~~~~gvp~~pg~~~~~~~~eea~~---~a~~i--GyPVliKas~ggGG~gm~iv~ 58 (211)
T PF02786_consen 4 RFRKLAKKLGVPVPPGSTVPISSVEEALE---FAEEI--GYPVLIKASAGGGGRGMRIVH 58 (211)
T ss_dssp HHHHHHHHTT-BBSSBESSSBSSHHHHHH---HHHHH---SSEEEEETTSSTTTSEEEES
T ss_pred HHHHHHHHCCCCcCCCCCCCCCCHHHHHH---HHHhc--CCceEEeeccccccccccccc
Confidence 5789999999999 444 89999998 57775 999999998766555555544
No 138
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=91.91 E-value=1.7 Score=44.90 Aligned_cols=111 Identities=20% Similarity=0.247 Sum_probs=68.8
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCCCCCe---ee-----ecCCCCHHHHHHHHHHHhcCC---CccEEEEEecccc--
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANF---LD-----VGGGVNEESIIQAFRIISSDS---NVKCILVNVFGGI-- 367 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNP---lD-----l~g~a~~~~~~~al~~ll~dp---~vd~vlv~~~~~~-- 367 (525)
..+|||||...|+|+ -|.+.-..- .+| +. +=|...+..+.++++.+.+.+ .+|.|++.=.||.
T Consensus 14 p~~I~vITs~~gAa~--~D~~~~~~~--r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~e 89 (319)
T PF02601_consen 14 PKRIAVITSPTGAAI--QDFLRTLKR--RNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIE 89 (319)
T ss_pred CCEEEEEeCCchHHH--HHHHHHHHH--hCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChH
Confidence 469999999999887 677665433 333 22 235556677999999998776 7998887544442
Q ss_pred ----cChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHH-HHHhhCCCCccccCCHHHHHHHHH
Q psy7785 368 ----VNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGK-RILDESKLPLIFASDLDEAASLVN 427 (525)
Q Consensus 368 ----~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~-~~L~~~Gvpvf~~~s~~~Av~Al~ 427 (525)
.+.+.+|++|.+ ++.||+...+-. .+... ....+. +++||..|+..+.
T Consensus 90 DL~~FN~e~varai~~------~~~PvisaIGHe-~D~ti~D~vAd~-----ra~TPtaaAe~~~ 142 (319)
T PF02601_consen 90 DLWAFNDEEVARAIAA------SPIPVISAIGHE-TDFTIADFVADL-----RAPTPTAAAELIV 142 (319)
T ss_pred HhcccChHHHHHHHHh------CCCCEEEecCCC-CCchHHHHHHHh-----hCCCHHHHHHHHh
Confidence 244555665544 679987654433 22222 222222 3467777766554
No 139
>PRK14016 cyanophycin synthetase; Provisional
Probab=91.59 E-value=0.15 Score=58.80 Aligned_cols=43 Identities=23% Similarity=0.360 Sum_probs=35.9
Q ss_pred HHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785 447 VQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN 494 (525)
Q Consensus 447 e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~ 494 (525)
-..++++|+++|||+ ..+.+.+++.+ +++++ |||||+|-...+
T Consensus 215 K~~tk~lL~~~GIPvP~~~~v~s~~~a~~---~a~~i--G~PvVVKP~~G~ 260 (727)
T PRK14016 215 KELTKRLLAAAGVPVPEGRVVTSAEDAWE---AAEEI--GYPVVVKPLDGN 260 (727)
T ss_pred HHHHHHHHHHCCcCCCCeeEeCCHHHHHH---HHHHc--CCCEEEEECCCC
Confidence 346899999999999 77889999887 46674 999999987655
No 140
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=91.50 E-value=0.34 Score=53.06 Aligned_cols=105 Identities=12% Similarity=0.209 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHhcCCCCcEEE---EeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHH
Q psy7785 372 TIAKGLVNACKSFKLSIPLVV---RLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQ 448 (525)
Q Consensus 372 ~ia~~i~~a~~~~~~~kPivv---~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~ 448 (525)
-..+.|++++++. +---+- .+...+ .+..+.+.++|+-.. .=+..++++|.- -.
T Consensus 61 L~~dkIi~Aa~~t--GA~AIHPGYGFLSEN-a~FA~a~~~aGlvfI--GP~~~aI~aMGd------------------K~ 117 (645)
T COG4770 61 LDIDKIIDAARRT--GAQAIHPGYGFLSEN-ADFAQAVEDAGLVFI--GPSAGAIRAMGD------------------KI 117 (645)
T ss_pred ccHHHHHHHHHHh--CcccccCCccccccC-HHHHHHHHHCCcEEE--CCCHHHHHHhcc------------------HH
Confidence 3456777776652 211121 112223 444566778899555 545667777632 23
Q ss_pred HHHHHHHHCCCCe-----EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhhh
Q psy7785 449 EGKRILDESKLPL-----IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDE 504 (525)
Q Consensus 449 eak~LL~ayGIpv-----~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~ 504 (525)
+||.+...+|+|+ ....|.+++++ .|++ +||||.+|....+--+|-|+..+
T Consensus 118 ~AK~l~~~AgVp~VPG~~g~~qd~~~~~~---~A~e--iGyPVlIKAsaGGGGKGMRvv~~ 173 (645)
T COG4770 118 AAKKLAAEAGVPTVPGYHGPIQDAAELVA---IAEE--IGYPVLIKASAGGGGKGMRVVET 173 (645)
T ss_pred HHHHHHHHcCCCccCCCCCcccCHHHHHH---HHHh--cCCcEEEEeccCCCCCceEeecC
Confidence 7999999999998 56777777777 5778 49999999988877777665543
No 141
>PRK06849 hypothetical protein; Provisional
Probab=91.46 E-value=6.1 Score=41.88 Aligned_cols=154 Identities=12% Similarity=0.037 Sum_probs=81.4
Q ss_pred CcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHH
Q psy7785 302 GNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNAC 381 (525)
Q Consensus 302 ~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~ 381 (525)
.+|.|+..+.+.|.-.+-.+.+.|..+ -+. +.....+....+ .+|..+. .+....+.....+.|.+.+
T Consensus 5 ~~VLI~G~~~~~~l~iar~l~~~G~~V----i~~-d~~~~~~~~~s~------~~d~~~~-~p~p~~d~~~~~~~L~~i~ 72 (389)
T PRK06849 5 KTVLITGARAPAALELARLFHNAGHTV----ILA-DSLKYPLSRFSR------AVDGFYT-IPSPRWDPDAYIQALLSIV 72 (389)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEE----EEE-eCCchHHHHHHH------hhhheEE-eCCCCCCHHHHHHHHHHHH
Confidence 467777777777888888999888752 111 112222221111 1232222 2222233456667777777
Q ss_pred HhcCCCCcEEEEeCCcc--hHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCC
Q psy7785 382 KSFKLSIPLVVRLEGTN--VQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKL 459 (525)
Q Consensus 382 ~~~~~~kPivv~~~g~~--~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGI 459 (525)
++ .+..+++...... ....+..|+. ++.++ ..+++ .+..+. +-..-.++++..||
T Consensus 73 ~~--~~id~vIP~~e~~~~~a~~~~~l~~-~~~v~-~~~~~-~~~~~~------------------DK~~~~~~~~~~Gi 129 (389)
T PRK06849 73 QR--ENIDLLIPTCEEVFYLSHAKEELSA-YCEVL-HFDFE-LLLLLH------------------NKWEFAEQARSLGL 129 (389)
T ss_pred HH--cCCCEEEECChHHHhHHhhhhhhcC-CcEEE-cCCHH-HHHHhh------------------CHHHHHHHHHHcCC
Confidence 76 3445554433221 1111223332 23333 12332 232221 23357889999999
Q ss_pred Ce---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785 460 PL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN 494 (525)
Q Consensus 460 pv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~ 494 (525)
|+ ....+.+++.. .+.+. .|||+|+|=....
T Consensus 130 pvP~t~~v~~~~~l~~---~~~~~-~~~P~vlKP~~~~ 163 (389)
T PRK06849 130 SVPKTYLITDPEAIRN---FMFKT-PHTPYVLKPIYSR 163 (389)
T ss_pred CCCCEEEeCCHHHHHH---HhhcC-CCCcEEEEeCccc
Confidence 99 66778887765 33342 3899999976554
No 142
>KOG0238|consensus
Probab=91.16 E-value=0.65 Score=50.28 Aligned_cols=104 Identities=15% Similarity=0.199 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhcCCCCcEEEEeCC--cchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHH
Q psy7785 373 IAKGLVNACKSFKLSIPLVVRLEG--TNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEG 450 (525)
Q Consensus 373 ia~~i~~a~~~~~~~kPivv~~~g--~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~ea 450 (525)
..+.|++++.+ ++..-+---.| .+..+..+..+++|+-.. .-+..|++.+.. -..+
T Consensus 58 ~~~~I~~aa~~--tgaqaihPGYGFLSEn~~Fae~c~~~Gi~Fi--GP~~~aIrdMG~------------------K~~s 115 (670)
T KOG0238|consen 58 RMDKIIDAAKR--TGAQAIHPGYGFLSENAEFAELCEDAGITFI--GPPPSAIRDMGD------------------KSTS 115 (670)
T ss_pred hHHHHHHHHHh--cCCceecCCccccccchHHHHHHHHcCCeEE--CCCHHHHHHhcc------------------hHHH
Confidence 34567777665 33222321122 123455677888999666 555667766632 2369
Q ss_pred HHHHHHCCCCe-----EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhh
Q psy7785 451 KRILDESKLPL-----IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILD 503 (525)
Q Consensus 451 k~LL~ayGIpv-----~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~ 503 (525)
|++..++|+|+ ....|.|++++ .|+++ ||||.+|..-.+--+|-||..
T Consensus 116 k~im~~AgVp~vpG~~g~~qs~e~~~~---~a~eI--gyPvMiKa~~GGGGkGMria~ 168 (670)
T KOG0238|consen 116 KQIMKAAGVPLVPGYHGEDQSDEEAKK---VAREI--GYPVMIKATAGGGGKGMRIAW 168 (670)
T ss_pred HHHHHhcCCccccCcccccccHHHHHH---HHHhc--CCcEEEEeccCCCCcceEeec
Confidence 99999999998 67788899998 46684 999999997665555555444
No 143
>PRK12999 pyruvate carboxylase; Reviewed
Probab=91.15 E-value=0.73 Score=55.80 Aligned_cols=154 Identities=12% Similarity=0.126 Sum_probs=83.6
Q ss_pred EEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhc
Q psy7785 305 GCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSF 384 (525)
Q Consensus 305 aIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~ 384 (525)
-.|.|.|-.++...-+|.+.|... +=+..+.+.. +...-..|. .+.+...........-.+.|++.+++.
T Consensus 8 vLianrGeiavri~raa~elGi~~---Vav~s~~D~~----a~~~~~ADe---~~~i~~~~~~~~~Yldid~Ii~iAk~~ 77 (1146)
T PRK12999 8 VLVANRGEIAIRIFRAATELGIRT---VAIYSEEDKL----SLHRFKADE---AYLIGEGKHPVRAYLDIDEIIRVAKQA 77 (1146)
T ss_pred EEEECCcHHHHHHHHHHHHcCCEE---EEEECCCCcC----CchHHhCCE---EEEcCCCCCcccCccCHHHHHHHHHHh
Confidence 467889999999999999999752 1111111110 001111221 122210000011111134566666652
Q ss_pred CCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe-
Q psy7785 385 KLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL- 461 (525)
Q Consensus 385 ~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv- 461 (525)
+.-.+....|. +.....+.+++.|+++. ....+++..+. +-..+++++.++|||+
T Consensus 78 --~iDaI~PgyGflsE~~~~a~~~e~~Gi~fi--Gps~eai~~~~------------------DK~~~r~~l~~~GVPv~ 135 (1146)
T PRK12999 78 --GVDAIHPGYGFLSENPEFARACAEAGITFI--GPTAEVLRLLG------------------DKVAARNAAIKAGVPVI 135 (1146)
T ss_pred --CCCEEEeCCCccccCHHHHHHHHHcCCccc--CCCHHHHHHhC------------------CHHHHHHHHHHCCCCCC
Confidence 22122222221 22334566788899865 33333343331 2346899999999998
Q ss_pred --E--EEcChhHHHHHHHHhhhcCCCCcEEEEEecCCh
Q psy7785 462 --I--FASDLDEAASLVNACKSFKLSIPLVVRLEGTNV 495 (525)
Q Consensus 462 --~--lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~ 495 (525)
. .+.+.+++.+ +++++ ||||++|-....-
T Consensus 136 P~~~~~v~s~eea~~---~a~~i--GyPvVVKP~~GgG 168 (1146)
T PRK12999 136 PGSEGPIDDIEEALE---FAEEI--GYPIMLKASAGGG 168 (1146)
T ss_pred CCcccCCCCHHHHHH---HHHHh--CCCEEEEECCCCC
Confidence 2 5788898887 46674 9999999866543
No 144
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=91.10 E-value=0.76 Score=46.85 Aligned_cols=66 Identities=20% Similarity=0.275 Sum_probs=45.6
Q ss_pred HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS 479 (525)
Q Consensus 403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~ 479 (525)
...++..|+|++ .+...++.... +-...+++|..+|||+ ..+.+.+++.+ .+.+
T Consensus 75 ~~~le~~gi~~~--g~~~~~~~~~~------------------dK~~~k~~l~~~gIp~p~~~~~~~~~~~~~---~~~~ 131 (304)
T PRK01372 75 QGLLELLGIPYT--GSGVLASALAM------------------DKLRTKLVWQAAGLPTPPWIVLTREEDLLA---AIDK 131 (304)
T ss_pred HHHHHHcCCCcc--CCCHHHHHHHh------------------CHHHHHHHHHHCCCCCCCEEEEeCcchHHH---HHhh
Confidence 346777899988 54333332221 1236889999999999 77788887666 3556
Q ss_pred cCCCCcEEEEEecC
Q psy7785 480 FKLSIPLVVRLEGT 493 (525)
Q Consensus 480 ~~~G~PVVlKi~~~ 493 (525)
+ |||+|+|-...
T Consensus 132 ~--~~P~ivKP~~g 143 (304)
T PRK01372 132 L--GLPLVVKPARE 143 (304)
T ss_pred c--CCCEEEeeCCC
Confidence 4 99999997653
No 145
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=91.05 E-value=0.72 Score=49.88 Aligned_cols=68 Identities=13% Similarity=0.234 Sum_probs=46.2
Q ss_pred HHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe-----EEEcChhHHHHHHHH
Q psy7785 402 GKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL-----IFASDLDEAASLVNA 476 (525)
Q Consensus 402 ~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv-----~lA~s~deAv~~~~a 476 (525)
....++..|+|++ ....+++... .+-...+++|+.+|||+ ....+.+++.+ .
T Consensus 91 ~~~~~~~~g~~~~--g~~~~~~~~~------------------~dK~~~k~~l~~~gIp~p~~~~~~~~~~~e~~~---~ 147 (450)
T PRK06111 91 FAERCKEEGIVFI--GPSADIIAKM------------------GSKIEARRAMQAAGVPVVPGITTNLEDAEEAIA---I 147 (450)
T ss_pred HHHHHHHCCCeEE--CCCHHHHHHh------------------CCHHHHHHHHHHCCCCCCCCcCcCcCCHHHHHH---H
Confidence 3457778899876 4434434322 12346789999999997 23467788776 4
Q ss_pred hhhcCCCCcEEEEEecCC
Q psy7785 477 CKSFKLSIPLVVRLEGTN 494 (525)
Q Consensus 477 a~~~~~G~PVVlKi~~~~ 494 (525)
++++ |||+|+|-....
T Consensus 148 ~~~~--~~P~VvKP~~g~ 163 (450)
T PRK06111 148 ARQI--GYPVMLKASAGG 163 (450)
T ss_pred HHHh--CCCEEEEeCCCC
Confidence 5564 999999987654
No 146
>PRK06091 membrane protein FdrA; Validated
Probab=90.93 E-value=5.3 Score=44.39 Aligned_cols=169 Identities=18% Similarity=0.218 Sum_probs=98.1
Q ss_pred eceeEecCCcEEEeeeEEEecCCchhccccccccCCCCCCChHhhhhhccCCceecc---------CCcEEEEecchhHH
Q psy7785 244 NPLVETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGM---------DGNIGCLVNGAGLA 314 (525)
Q Consensus 244 NPl~v~~~g~~~alDa~i~ld~~a~frq~~i~~~~~~~~~~~~E~~a~~~~l~~~~~---------~~rIaIitnsGG~g 314 (525)
-|+++..-|+ ...--||.|++++++ .+|+......|..++. ++.|==+=+||=++
T Consensus 280 KPVVvlk~Gr-----------s~~g~~q~GVi~a~t-----leEl~~~A~~la~~~~~~~~~~~~~~~~irGly~GGTL~ 343 (555)
T PRK06091 280 KPVVALFLGY-----------TPAVARDENVWFAST-----LDEAARLACLLSRVTAQRNAILPVSQGFICGLYTGGTLA 343 (555)
T ss_pred CCEEEEEecC-----------CchhhhcCCeEEeCC-----HHHHHHHHHHHhcccccccccccccCCeeEEEecCchHH
Confidence 4888877662 111128999999844 4665554433332222 23342233455566
Q ss_pred HHHHHHHHHcCCC----------------CCCeeeecCCCCH----------HHHHHHHHHHhcCCCccEEEEEec---c
Q psy7785 315 MATMDIIKLHGGE----------------PANFLDVGGGVNE----------ESIIQAFRIISSDSNVKCILVNVF---G 365 (525)
Q Consensus 315 vlaaD~~~~~Gl~----------------~aNPlDl~g~a~~----------~~~~~al~~ll~dp~vd~vlv~~~---~ 365 (525)
--++ .+.+..+. -.-.+|++.+... ..=.+-+....+||++..|++-+. +
T Consensus 344 ~Ea~-~~~~~~~~~~~~~~~~~~~~l~~~~h~~iDlGdD~~T~GrpHPMIDp~~R~~~~~~~a~dp~~~VillD~vlGyG 422 (555)
T PRK06091 344 AEAA-GLLAGHLGVEADDEHHHGMMLDADGHQIIDLGDDFYTVGRPHPMIDPTLRNQLIADLGAKPQVRVLLLDVVIGFG 422 (555)
T ss_pred HHHH-HHHHhcCCCccCCcCCccceeecCCceEEecCcccccCCCCCCCcChHHHHHHHHHhccCCcceEEEEEeeeccC
Confidence 6666 55333321 1345899866432 222445666778999998887432 2
Q ss_pred ccc-ChHHHHHHHHHHH--HhcCCCCcEEEEeCCc-----chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhc
Q psy7785 366 GIV-NCATIAKGLVNAC--KSFKLSIPLVVRLEGT-----NVQEGKRILDESKLPLIFASDLDEAASLVNACKS 431 (525)
Q Consensus 366 ~~~-~~~~ia~~i~~a~--~~~~~~kPivv~~~g~-----~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~ 431 (525)
.-. +...++.+|.++. +...+..++++...|+ +..+..+.|+++|+-++ +|-.+|++....+..
T Consensus 423 ah~dpa~~l~~ai~~~~~~~~~~r~l~~v~~v~GT~~DpQ~~~~q~~~L~~aGv~v~--~sn~~a~~~a~~~~~ 494 (555)
T PRK06091 423 ATADPAGSLVSAIQKACAARADGQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVV--DSLPEATLLAAALIR 494 (555)
T ss_pred CCCChHHHHHHHHHHHHhhhhcCCceEEEEEEeCCCCCCcCHHHHHHHHHhCCeEEE--cCcHHHHHHHHHHhh
Confidence 222 2345666666553 2111234445556674 34556789999999999 999999988887763
No 147
>TIGR02144 LysX_arch Lysine biosynthesis enzyme LysX. The family of proteins found in this equivalog include the characterized LysX from Thermus thermophilus which is part of a well-organized lysine biosynthesis gene cluster. LysX is believed to carry out an ATP-dependent acylation of the amino group of alpha-aminoadipate in the prokaryotic version of the fungal AAA lysine biosynthesis pathway. No species having a sequence in this equivalog contains the elements of the more common diaminopimelate lysine biosythesis pathway, and none has been shown to be a lysine auxotroph. These sequences have mainly recieved the name of the related enzyme, "ribosomal protein S6 modification protein RimK". RimK has been characterized in E. coli, and acts by ATP-dependent condensation of S6 with glutamate residues.
Probab=90.92 E-value=1.1 Score=44.88 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=43.5
Q ss_pred HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS 479 (525)
Q Consensus 403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~ 479 (525)
...++..|+|++ .+++ ++.... +-...+++|+++|||+ ..+.+.+++.+ ...+
T Consensus 65 ~~~le~~g~~~~--n~~~-~~~~~~------------------dK~~~~~~l~~~gip~P~t~~~~~~~~~~~---~~~~ 120 (280)
T TIGR02144 65 ARLLEALGVPVI--NSSH-VIEACG------------------DKIFTYLKLAKAGVPTPRTYLAFDREAALK---LAEA 120 (280)
T ss_pred HHHHHHCCCcEE--CcHH-HHHHHh------------------hHHHHHHHHHHCCcCCCCeEeeCCHHHHHH---HHHH
Confidence 446778899999 6653 332221 1124677999999999 55667777766 3445
Q ss_pred cCCCCcEEEEEec
Q psy7785 480 FKLSIPLVVRLEG 492 (525)
Q Consensus 480 ~~~G~PVVlKi~~ 492 (525)
+ |||+|+|-..
T Consensus 121 ~--~~P~vvKP~~ 131 (280)
T TIGR02144 121 L--GYPVVLKPVI 131 (280)
T ss_pred c--CCCEEEEECc
Confidence 3 9999999754
No 148
>PRK06524 biotin carboxylase-like protein; Validated
Probab=90.89 E-value=0.94 Score=49.62 Aligned_cols=83 Identities=14% Similarity=0.162 Sum_probs=50.2
Q ss_pred CCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EE
Q psy7785 387 SIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IF 463 (525)
Q Consensus 387 ~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~l 463 (525)
++|.++.++-+ ......|+..|+|+. -...+++...+ +-..+|+++++.|||+ .+
T Consensus 105 ~~~~~~fl~~D--G~iQ~lLE~lGIpy~--gP~a~asai~m------------------DK~~tK~l~~~aGIPtpp~~~ 162 (493)
T PRK06524 105 PGGKACFVMFD--EETEALARQAGLEVM--HPPAELRHRLD------------------SKIVTTRLANEAGVPSVPHVL 162 (493)
T ss_pred CCCceEEecCC--HHHHHHHHHCCCeEE--CcCHHHHHHhC------------------CHHHHHHHHHHcCCCCCCccc
Confidence 45555544433 233457888999996 44333333221 2346899999999999 33
Q ss_pred --EcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785 464 --ASDLDEAASLVNACKSFKLSIPLVVRLEGTN 494 (525)
Q Consensus 464 --A~s~deAv~~~~aa~~~~~G~PVVlKi~~~~ 494 (525)
+.+.+++...++. ..+ |||||+|-....
T Consensus 163 ~~~~~~eel~~~~~~-~~I--GyPvVVKP~~GG 192 (493)
T PRK06524 163 GRVDSYDELSALAHG-AGL--GDDLVVQTPYGD 192 (493)
T ss_pred ccCCCHHHHHHHHHh-ccC--CCcEEEEECCCC
Confidence 4566665542221 124 999999987443
No 149
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=90.87 E-value=0.82 Score=55.26 Aligned_cols=100 Identities=10% Similarity=0.147 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHH
Q psy7785 374 AKGLVNACKSFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGK 451 (525)
Q Consensus 374 a~~i~~a~~~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak 451 (525)
.+.|++++++. +.=.+....|. ......+.+++.|+++. ....++++.+. +-..++
T Consensus 63 id~Ii~iak~~--~iDaI~PGyGflsE~~~~a~~le~~Gi~fi--Gps~e~i~~~~------------------DK~~ar 120 (1143)
T TIGR01235 63 IDEIIRVAKLN--GVDAIHPGYGFLSENSEFADACNKAGIIFI--GPKAEVMDQLG------------------DKVAAR 120 (1143)
T ss_pred HHHHHHHHHHh--CCCEEEECCCccccCHHHHHHHHHcCCccc--CCCHHHHHHhc------------------CHHHHH
Confidence 34566666652 22223322221 22334566788899876 44344444331 234689
Q ss_pred HHHHHCCCCe---E--EEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHH
Q psy7785 452 RILDESKLPL---I--FASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKR 500 (525)
Q Consensus 452 ~LL~ayGIpv---~--lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~ 500 (525)
++++++|||+ . ...+.+++.+ .++++ ||||++|-....-..|.+
T Consensus 121 ~la~~~GVPvpp~t~~~v~~~eea~~---~ae~i--GyPvIVKP~~GGGGrG~r 169 (1143)
T TIGR01235 121 NLAIKAGVPVVPGTDGPPETMEEVLD---FAAAI--GYPVIIKASWGGGGRGMR 169 (1143)
T ss_pred HHHHHcCCCCCCCcccCcCCHHHHHH---HHHHc--CCCEEEEECCCCCCCccE
Confidence 9999999999 2 4578888887 45564 999999997765433333
No 150
>COG1181 DdlA D-alanine-D-alanine ligase and related ATP-grasp enzymes [Cell envelope biogenesis, outer membrane]
Probab=90.75 E-value=0.73 Score=47.86 Aligned_cols=85 Identities=16% Similarity=0.177 Sum_probs=61.0
Q ss_pred hCCCCCCCccccCC----HHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccc
Q psy7785 19 VSTVHSTDKVCLED----ARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLI 94 (525)
Q Consensus 19 ~~GIpvp~~~~~~~----~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~ 94 (525)
..|+|++++..++. .....+....++| |++||+.-. |. + + |+....+.++.+++.+.....
T Consensus 113 ~~g~~~a~~~~~~~~~~~~~~~e~~~~~l~~-p~~Vkp~~~----gS-----S-v-g~~~v~~~~d~~~~~e~a~~~--- 177 (317)
T COG1181 113 AEGLPVAPYVALTRDEYSSVIVEEVEEGLGF-PLFVKPARE----GS-----S-V-GRSPVNVEGDLQSALELAFKY--- 177 (317)
T ss_pred HCCCCccceeeeecccchhHHHHHhhcccCC-CEEEEcCCc----cc-----e-e-eEEEeeeccchHHHHHHHHHh---
Confidence 78999999988874 3334567778897 999999644 11 1 2 444555667777755555432
Q ss_pred cccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 95 TKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 95 ~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
-+.+++|+++. ++|+-+++..+..
T Consensus 178 ----------d~~vl~e~~~~-~rei~v~vl~~~~ 201 (317)
T COG1181 178 ----------DRDVLREQGIT-GREIEVGVLGNDY 201 (317)
T ss_pred ----------CCceeeccCCC-cceEEEEecCCcc
Confidence 25689999998 9999999998855
No 151
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=90.64 E-value=0.63 Score=48.69 Aligned_cols=138 Identities=16% Similarity=0.209 Sum_probs=77.9
Q ss_pred EEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHh
Q psy7785 304 IGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKS 383 (525)
Q Consensus 304 IaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~ 383 (525)
|+||.. |-++.+.+.++.+.|..+.- +|...+.... +. .|. .++ ....+. +.|.+.++.
T Consensus 2 igiiG~-gql~~~l~~aa~~lG~~v~~-~d~~~~~p~~------~~--ad~----~~~---~~~~d~----~~i~~~a~~ 60 (352)
T TIGR01161 2 VGILGG-GQLGRMLALAARPLGIKVHV-LDPDANSPAV------QV--ADH----VVL---APFFDP----AAIRELAES 60 (352)
T ss_pred EEEECC-CHHHHHHHHHHHHcCCEEEE-ECCCCCCChh------Hh--Cce----eEe---CCCCCH----HHHHHHHhh
Confidence 677776 47888999999999975311 1111111111 11 121 111 112222 233333333
Q ss_pred cCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe--
Q psy7785 384 FKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL-- 461 (525)
Q Consensus 384 ~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv-- 461 (525)
++ ++..-...-.......+++.|+|++ ++++ ++... .+-...+++|+++|||+
T Consensus 61 --~d--vit~e~e~i~~~~l~~l~~~g~~~~--p~~~-~~~~~------------------~dK~~~k~~l~~~gip~p~ 115 (352)
T TIGR01161 61 --CD--VITFEFEHVDVEALEKLEARGVKLF--PSPD-ALAII------------------QDRLTQKQFLQKLGLPVPP 115 (352)
T ss_pred --CC--EEEeCcCcCCHHHHHHHHhCCCeEC--CCHH-HHHHh------------------cCHHHHHHHHHHcCCCCCC
Confidence 32 2322111112345667888889888 6664 22222 12335789999999999
Q ss_pred -EEEcChhHHHHHHHHhhhcCCCCcEEEEEec
Q psy7785 462 -IFASDLDEAASLVNACKSFKLSIPLVVRLEG 492 (525)
Q Consensus 462 -~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~ 492 (525)
..+.+.+++.+ .++++ |||+|+|-..
T Consensus 116 ~~~~~~~~~~~~---~~~~~--g~P~vvKp~~ 142 (352)
T TIGR01161 116 FLVIKDEEELDA---ALQEL--GFPVVLKART 142 (352)
T ss_pred ccEeCCHHHHHH---HHHHc--CCCEEEEeCC
Confidence 77888888776 45564 9999999874
No 152
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=90.38 E-value=1.5 Score=48.24 Aligned_cols=67 Identities=13% Similarity=0.182 Sum_probs=46.3
Q ss_pred HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe----EEEcChhHHHHHHHHhh
Q psy7785 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL----IFASDLDEAASLVNACK 478 (525)
Q Consensus 403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv----~lA~s~deAv~~~~aa~ 478 (525)
...|++.|+|+| ....++++.- .+-..+|++|+.+|||+ ..+++.++|.+. ++
T Consensus 86 ad~l~~~Gi~v~--Gps~~aa~le------------------~dK~~~K~~l~~~gIpt~~~~~~~~~~~ea~~~---~~ 142 (486)
T PRK05784 86 ADVLREEGFPVF--GASSKCARIE------------------KSKVWARELMWKYSIPGRLRYKVFYDVEEAAKF---IE 142 (486)
T ss_pred HHHHHhCCCCEE--CCcHHHHHHh------------------cCHHHHHHHHHHcCcCCCccceEeCCHHHHHHH---Hh
Confidence 457888999998 4433332221 12347899999999996 566889988874 44
Q ss_pred hcCCCCcEEEEEecCCh
Q psy7785 479 SFKLSIPLVVRLEGTNV 495 (525)
Q Consensus 479 ~~~~G~PVVlKi~~~~~ 495 (525)
. .+|||+|-.+.--
T Consensus 143 ~---~~PvVVKP~~~ag 156 (486)
T PRK05784 143 Y---GGSVAIKPARQAG 156 (486)
T ss_pred h---cCCEEEeeCCCCC
Confidence 4 4699999876543
No 153
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=90.25 E-value=0.25 Score=58.17 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=36.5
Q ss_pred HHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCCh
Q psy7785 447 VQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNV 495 (525)
Q Consensus 447 e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~ 495 (525)
-..+|++|+++|||+ ..+.+.++|.+ +++++ |||||+|-...+-
T Consensus 214 K~~tk~lL~~~GIpvP~~~~~~s~~ea~~---~~~~i--g~PvVVKP~~g~~ 260 (864)
T TIGR02068 214 KDLTKEILSDAGVPVPEGTVVQSAEDAWE---AAQDL--GYPVVIKPYDGNH 260 (864)
T ss_pred HHHHHHHHHHcCcCCCCEEEECCHHHHHH---HHHHc--CCCEEEEECCCCC
Confidence 346899999999999 78899999887 46674 9999999876653
No 154
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=89.57 E-value=1.5 Score=45.25 Aligned_cols=81 Identities=15% Similarity=0.174 Sum_probs=52.0
Q ss_pred CCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEe-CCcccHHHHHHHHhccccccccC
Q psy7785 20 STVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFT-NNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 20 ~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~-~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
+..++|++.+..+++++.++.++.| |+|+|+..-++| + ||... .+........ +.+.. .
T Consensus 130 ~~~~vP~T~v~~~~~~~~~~~~~~g--~vVvKPl~G~~G--~---------gv~~v~~~~~~~~~~~-~~~~~-~----- 189 (312)
T TIGR01380 130 FPKVIPPTLVTRDKAEIRAFLAEHG--DIVLKPLDGMGG--E---------GIFRLDPGDPNFNSIL-ETMTQ-R----- 189 (312)
T ss_pred CcCCCCCEEEeCCHHHHHHHHHHcC--CEEEEECCCCCC--c---------eEEEEcCCCccHHHHH-HHHHh-c-----
Confidence 4458999999899999999999886 799999654443 3 45543 3333333222 22211 1
Q ss_pred CCCCcccCeEEEEeeeCC--ceeEEEEEE
Q psy7785 99 PKTGINVNKVMVAKSVNI--TRETYFCIV 125 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~--~~E~~vgv~ 125 (525)
+ -..+++|+|++. +.++.+-+.
T Consensus 190 ---~--~~~~~vQ~yI~~~~~~D~Rv~vv 213 (312)
T TIGR01380 190 ---G--REPVMAQRYLPEIKEGDKRILLI 213 (312)
T ss_pred ---c--CCcEEEEeccccccCCCEEEEEE
Confidence 1 146999999973 467777654
No 155
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=88.91 E-value=1.4 Score=43.81 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=44.7
Q ss_pred HHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhh
Q psy7785 402 GKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACK 478 (525)
Q Consensus 402 ~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~ 478 (525)
..+.++..|+|++ .++ +++.... +-...+++|+.+|||+ ....+.+++.+ ...
T Consensus 65 ~~~~l~~~g~~~~--~~~-~~~~~~~------------------dK~~~~~~l~~~gi~~P~t~~~~~~~~~~~---~~~ 120 (277)
T TIGR00768 65 VARYLESLGVPVI--NSS-DAILNAG------------------DKFLTSQLLAKAGLPQPRTGLAGSPEEALK---LIE 120 (277)
T ss_pred HHHHHHHCCCeee--CCH-HHHHHHh------------------hHHHHHHHHHHCCCCCCCEEEeCCHHHHHH---HHH
Confidence 3456777899998 665 3333221 1235688999999999 66778877766 345
Q ss_pred hcCCCCcEEEEEec
Q psy7785 479 SFKLSIPLVVRLEG 492 (525)
Q Consensus 479 ~~~~G~PVVlKi~~ 492 (525)
++ |||+|+|-..
T Consensus 121 ~~--~~p~vvKP~~ 132 (277)
T TIGR00768 121 EI--GFPVVLKPVF 132 (277)
T ss_pred hc--CCCEEEEECc
Confidence 63 8999999754
No 156
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=88.44 E-value=0.97 Score=47.04 Aligned_cols=72 Identities=18% Similarity=0.246 Sum_probs=43.9
Q ss_pred HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHH---HHHHHH
Q psy7785 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEA---ASLVNA 476 (525)
Q Consensus 403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deA---v~~~~a 476 (525)
...|+..|+|+. .+...+.... .+-...|++|+++|||+ ....+.++. .. ..
T Consensus 100 q~lle~~gipy~--G~~~~a~~l~------------------~DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~--~~ 157 (333)
T PRK01966 100 QGLLELLGIPYV--GCGVLASALS------------------MDKILTKRLLAAAGIPVAPYVVLTRGDWEEASLA--EI 157 (333)
T ss_pred HHHHHHcCCCcc--CCCHHHHHHH------------------hCHHHHHHHHHHcCCCCCCEEEEeccccchhhHH--HH
Confidence 347777899988 4433322221 12346899999999999 444444432 12 12
Q ss_pred hhhcCCCCcEEEEEecCChHHH
Q psy7785 477 CKSFKLSIPLVVRLEGTNVQEG 498 (525)
Q Consensus 477 a~~~~~G~PVVlKi~~~~~~~~ 498 (525)
.+. .|||+|+|=....-..|
T Consensus 158 ~~~--~~~P~vVKP~~~gsS~G 177 (333)
T PRK01966 158 EAK--LGLPVFVKPANLGSSVG 177 (333)
T ss_pred HHh--cCCCEEEEeCCCCCccC
Confidence 345 49999999876554333
No 157
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=88.41 E-value=1.8 Score=48.75 Aligned_cols=140 Identities=16% Similarity=0.186 Sum_probs=80.3
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHH
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNA 380 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a 380 (525)
..+|+||..| -.|.+.+-++.+.|+.+. .+|...++....+ . |-.++ ....+.+ .+.+.
T Consensus 22 ~k~IgIIGgG-qlg~mla~aA~~lG~~Vi-~ld~~~~apa~~~--------A----D~~~v---~~~~D~~----~l~~~ 80 (577)
T PLN02948 22 ETVVGVLGGG-QLGRMLCQAASQMGIKVK-VLDPLEDCPASSV--------A----ARHVV---GSFDDRA----AVREF 80 (577)
T ss_pred CCEEEEECCC-HHHHHHHHHHHHCCCEEE-EEeCCCCCchhhh--------C----ceeee---CCCCCHH----HHHHH
Confidence 3579998766 577788888888897531 1233222221111 1 21222 1122222 34444
Q ss_pred HHhcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCC
Q psy7785 381 CKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLP 460 (525)
Q Consensus 381 ~~~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIp 460 (525)
+++ .+ ++......-..+..+.+++.|+|++ .+++. +... .+-...|++|+..|||
T Consensus 81 a~~--~d--vIt~e~e~v~~~~l~~le~~gi~v~--ps~~a-l~i~------------------~DK~~~K~~l~~~GIp 135 (577)
T PLN02948 81 AKR--CD--VLTVEIEHVDVDTLEALEKQGVDVQ--PKSST-IRII------------------QDKYAQKVHFSKHGIP 135 (577)
T ss_pred HHH--CC--EEEEecCCCCHHHHHHHHhcCCccC--CCHHH-HHHh------------------cCHHHHHHHHHHCCcC
Confidence 443 22 3322212212345578889999987 66442 2222 1223578999999999
Q ss_pred e---EEEcChhHHHHHHHHhhhcCCCCcEEEEEe
Q psy7785 461 L---IFASDLDEAASLVNACKSFKLSIPLVVRLE 491 (525)
Q Consensus 461 v---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~ 491 (525)
+ ..+.+.+++.+ +++++ |||+|+|-.
T Consensus 136 tp~~~~v~~~~el~~---~~~~i--g~P~VvKP~ 164 (577)
T PLN02948 136 LPEFMEIDDLESAEK---AGDLF--GYPLMLKSR 164 (577)
T ss_pred CCCeEEeCCHHHHHH---HHHhc--CCcEEEEeC
Confidence 9 77778888765 45564 999999997
No 158
>KOG0370|consensus
Probab=88.32 E-value=1.7 Score=50.37 Aligned_cols=114 Identities=16% Similarity=0.199 Sum_probs=75.1
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
..||..|+|.-.++.+||..++++.|| ||.+.+-....| - ..-+..+.++++...++-.. .+
T Consensus 1043 ~i~v~Qp~Wkelt~~~eA~~F~~~VgY-P~lvRPSYVLSG--a---------AMnv~~~~~dl~~~L~~A~~---vs--- 1104 (1435)
T KOG0370|consen 1043 SIGVDQPAWKELTSLEEAKKFAEKVGY-PVLVRPSYVLSG--A---------AMNVVYSESDLKSYLEQASA---VS--- 1104 (1435)
T ss_pred HcCCCchhhhhhccHHHHHHHHHhcCC-ceEecccceecc--h---------hhhhhhcHHHHHHHHHHHhh---cC---
Confidence 789999999999999999999999998 999999644221 1 11123466777766655432 11
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEE-EcCCCCccEEEecCCCCcccccccccCCCeEEEEecCC
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIV-QDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDV 163 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~-~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~~l~p 163 (525)
+ -..|.|.+|+...+|+-+-.. +|+.. -+..+| -+||+---+.-|. ++.+||
T Consensus 1105 -~----dhPVVisKfie~AkEidvDAVa~~G~~--~~haiS----EHvEnAGVHSGDA--tlv~Pp 1157 (1435)
T KOG0370|consen 1105 -P----DHPVVISKFIEGAKEIDVDAVASDGKV--LVHAIS----EHVENAGVHSGDA--TLVLPP 1157 (1435)
T ss_pred -C----CCCEEhHHhhcccceechhhhccCCeE--EEEehh----hhhhcccccCCce--eEeCCc
Confidence 1 135899999999999987543 44332 233334 2566655544454 565666
No 159
>PRK05246 glutathione synthetase; Provisional
Probab=88.25 E-value=2.4 Score=43.76 Aligned_cols=78 Identities=15% Similarity=0.215 Sum_probs=51.8
Q ss_pred CCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEe-CCcccHHHHHHHHhccccccccCCCC
Q psy7785 23 HSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFT-NNVQDIPPILEKMIGHKLITKQTPKT 101 (525)
Q Consensus 23 pvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~-~~~eea~~a~~~l~~~~~~~~~~~~~ 101 (525)
++|++.+.++++++.++.++.| |+|+|+..-++| + ||.+. .+..++....+.+ .. .
T Consensus 134 ~vP~T~~~~~~~~~~~~~~~~~--~vVlKP~~G~~G--~---------gV~~i~~~~~~~~~~~~~l-~~-~-------- 190 (316)
T PRK05246 134 LMPPTLVTRDKAEIRAFRAEHG--DIILKPLDGMGG--A---------GIFRVKADDPNLGSILETL-TE-H-------- 190 (316)
T ss_pred cCCCEEEeCCHHHHHHHHHHCC--CEEEEECCCCCc--c---------ceEEEeCCCccHHHHHHHH-HH-c--------
Confidence 7899999999999999999886 899999654443 3 55555 3344443333332 21 1
Q ss_pred CcccCeEEEEeeeCC--ceeEEEEEE
Q psy7785 102 GINVNKVMVAKSVNI--TRETYFCIV 125 (525)
Q Consensus 102 g~~~~~vlVee~~~~--~~E~~vgv~ 125 (525)
+ -..++||++++. +.++.+-+.
T Consensus 191 ~--~~~~lvQ~~I~~~~~~D~Rv~vv 214 (316)
T PRK05246 191 G--REPVMAQRYLPEIKEGDKRILLV 214 (316)
T ss_pred c--CCeEEEEeccccCCCCCEEEEEE
Confidence 1 146999999964 466766665
No 160
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=88.16 E-value=1.1 Score=46.97 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=43.7
Q ss_pred HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEc------ChhHHHHH
Q psy7785 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFAS------DLDEAASL 473 (525)
Q Consensus 403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~------s~deAv~~ 473 (525)
...|+..|+|++ .+...+..... +-...|++|+++|||+ .... +.+++.+
T Consensus 107 q~~le~~gipy~--Gs~~~a~~i~~------------------DK~~~k~~l~~~GI~~p~~~~~~~~~~~~~~~~~~~- 165 (347)
T PRK14572 107 QGFLDTLGIPYT--GSGVLASALAM------------------DKTRANQIFLQSGQKVAPFFELEKLKYLNSPRKTLL- 165 (347)
T ss_pred HHHHHHcCcCcC--CCCHHHHHHHh------------------CHHHHHHHHHHcCCCCCCEEEEEccccccChHHHHH-
Confidence 457888999987 44333332221 2236899999999999 3332 3334433
Q ss_pred HHHhhhcCCCCcEEEEEecCChHH
Q psy7785 474 VNACKSFKLSIPLVVRLEGTNVQE 497 (525)
Q Consensus 474 ~~aa~~~~~G~PVVlKi~~~~~~~ 497 (525)
..+++ |||+|+|=....-+.
T Consensus 166 --~~~~l--~~PvvVKP~~ggsS~ 185 (347)
T PRK14572 166 --KLESL--GFPQFLKPVEGGSSV 185 (347)
T ss_pred --HHHhc--CCCEEEecCCCCCCC
Confidence 23454 999999986654433
No 161
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=87.81 E-value=3.1 Score=43.22 Aligned_cols=38 Identities=8% Similarity=0.214 Sum_probs=28.1
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhc--CCCcEEEEEeecc
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDL--NFKEYVIKAQILA 56 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~l--g~~PvVlK~~~~~ 56 (525)
+.|||||++.++.+.+.+.+...++ +++|||+|+..-.
T Consensus 47 ~aglpvP~T~~~~s~~~~~~~l~~~~~~~~~VVVKPl~Gs 86 (317)
T TIGR02291 47 AAGITVPELYGVIHNQAEVKTIHNIVKDHPDFVIKPAQGS 86 (317)
T ss_pred HcCCCCCCEEEecCchhhHHHHHHHHccCCCEEEEECCCC
Confidence 7999999999888877555555555 5447999996433
No 162
>PRK02471 bifunctional glutamate--cysteine ligase/glutathione synthetase; Provisional
Probab=87.60 E-value=0.53 Score=54.51 Aligned_cols=51 Identities=29% Similarity=0.312 Sum_probs=38.3
Q ss_pred HHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHh
Q psy7785 447 VQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRI 501 (525)
Q Consensus 447 e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~ 501 (525)
-..+|++|+++|||+ ..+.+.+++... ++++ .|||||+|-...+-..|-.+
T Consensus 489 K~~tk~lL~~~GIpvP~~~~~~~~e~a~~~---~~~~-~g~PvVVKP~~g~~G~GV~~ 542 (752)
T PRK02471 489 KVVTKKILAEAGFPVPAGDEFTSLEEALAD---YSLF-ADKAIVVKPKSTNFGLGISI 542 (752)
T ss_pred HHHHHHHHHHCCcCCCCEEEEcCHHHHHHH---HHHh-cCCCEEEEECCCCCcCCeEE
Confidence 346899999999999 678888888773 4342 38999999987765555443
No 163
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=87.20 E-value=1.6 Score=44.62 Aligned_cols=64 Identities=19% Similarity=0.243 Sum_probs=40.5
Q ss_pred HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS 479 (525)
Q Consensus 403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~ 479 (525)
...|+..|+|+. .+..+++.... +-..+|++|+.+|||+ ....+.. . ..+.
T Consensus 75 ~~~le~~gip~~--Gs~~~a~~l~~------------------DK~~~k~~l~~~gIptp~~~~~~~~~---~---~~~~ 128 (296)
T PRK14569 75 SALLEMLEIKHT--SSSMKSSVITM------------------DKMISKEILMHHRMPTPMAKFLTDKL---V---AEDE 128 (296)
T ss_pred HHHHHHcCCCee--CCCHHHHHHHH------------------CHHHHHHHHHHCCCCCCCeEEEchhh---h---hHhh
Confidence 457888999987 44433333221 2336899999999999 3443321 1 1334
Q ss_pred cCCCCcEEEEEecCC
Q psy7785 480 FKLSIPLVVRLEGTN 494 (525)
Q Consensus 480 ~~~G~PVVlKi~~~~ 494 (525)
.|||+|+|=....
T Consensus 129 --~~~P~vVKP~~gg 141 (296)
T PRK14569 129 --ISFPVAVKPSSGG 141 (296)
T ss_pred --cCCCEEEEeCCCC
Confidence 3999999976544
No 164
>KOG2799|consensus
Probab=87.10 E-value=0.64 Score=48.28 Aligned_cols=42 Identities=43% Similarity=0.631 Sum_probs=39.0
Q ss_pred CCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHHHHHHhH
Q psy7785 482 LSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAANWFI 523 (525)
Q Consensus 482 ~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (525)
.-.|+|+.+.||+.++|+.++.++++.....+++|+|++-++
T Consensus 371 ~~ipiv~rlqgt~v~~ak~~i~~sgmri~~~deldeaa~~~v 412 (434)
T KOG2799|consen 371 LNIPIVVRLQGTRVEAAKPIINTSGMRIRSFDELDEAAKKAV 412 (434)
T ss_pred cCCCEEEEecCCchhhhhhhHhhcCceEEechhhhHHhhhhc
Confidence 368999999999999999999999999999999999998874
No 165
>COG0189 RimK Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) [Coenzyme metabolism / Translation, ribosomal structure and biogenesis]
Probab=86.99 E-value=2 Score=44.59 Aligned_cols=66 Identities=23% Similarity=0.401 Sum_probs=44.3
Q ss_pred HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS 479 (525)
Q Consensus 403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~ 479 (525)
.+.++..|++++ .+|..-..+- +-..+.++|+..|+|+ .++.+.+++... .++.
T Consensus 97 ~~~~E~~G~~vi--N~p~~i~~~~-------------------nK~~~~~~l~~~~ipvP~T~i~~~~~~~~~~--~~~~ 153 (318)
T COG0189 97 LRLAERKGVPVI--NDPQSIRRCR-------------------NKLYTTQLLAKAGIPVPPTLITRDPDEAAEF--VAEH 153 (318)
T ss_pred HHHHHHcCCeEE--CCHHHHHhhh-------------------hHHHHHHHHHhcCCCCCCEEEEcCHHHHHHH--HHHh
Confidence 346667788888 6654322221 1224778999999988 777787777764 4455
Q ss_pred cCCCCcEEEEEecC
Q psy7785 480 FKLSIPLVVRLEGT 493 (525)
Q Consensus 480 ~~~G~PVVlKi~~~ 493 (525)
.|||||+|-...
T Consensus 154 --~g~pvVlKp~~G 165 (318)
T COG0189 154 --LGFPVVLKPLDG 165 (318)
T ss_pred --cCCCEEEeeCCC
Confidence 489999998543
No 166
>PF02222 ATP-grasp: ATP-grasp domain; InterPro: IPR003135 The ATP-grasp domain has an unusual nucleotide-binding fold, also referred to as palmate, and is found in a superfamily of enzymes including D-alanine-D-alanine ligase, glutathione synthetase, biotin carboxylase, and carbamoyl phosphate synthetase, the ribosomal protein S6 modification enzyme (RimK), urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis. This family does not contain all known ATP-grasp domain members. All the enzymes of this family possess ATP-dependent carboxylate-amine ligase activity, and their catalytic mechanisms are likely to include acylphosphate intermediates.; PDB: 3K5H_C 3K5I_C 3AX6_A 3Q2O_B 3QFF_B 3R5H_A 3ORQ_B 3ORR_B 4E4T_B 2Z04_A ....
Probab=86.96 E-value=0.72 Score=43.59 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=25.2
Q ss_pred HHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEE
Q psy7785 454 LDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRL 490 (525)
Q Consensus 454 L~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi 490 (525)
|++.|||+ ..+.+.++..+ ++.++ |||+|+|-
T Consensus 1 l~~~gip~~~~~~i~~~~~l~~---a~~~i--G~P~vlK~ 35 (172)
T PF02222_consen 1 LDELGIPTAPYATIDSLEDLEE---AAESI--GFPAVLKT 35 (172)
T ss_dssp HHHTT--B-EEEEESSHHHHHH---HHHHH--TSSEEEEE
T ss_pred CcccCCCCCCeEEECCHHHHHH---HHHHc--CCCEEEEc
Confidence 68899999 88999998887 56675 99999994
No 167
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=86.59 E-value=2.8 Score=42.90 Aligned_cols=66 Identities=15% Similarity=0.125 Sum_probs=43.3
Q ss_pred HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS 479 (525)
Q Consensus 403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~ 479 (525)
.+.|+..|++++ .++.. +.... +-...+++|+++|||+ .++.+.+++.+ .+++
T Consensus 77 ~~~le~~g~~v~--n~~~a-~~~~~------------------dK~~~~~~l~~~gip~P~t~~~~~~~~~~~---~~~~ 132 (300)
T PRK10446 77 LRQFEMLGSYPL--NESVA-IARAR------------------DKLRSMQLLARQGIDLPVTGIAHSPDDTSD---LIDM 132 (300)
T ss_pred HHHHHHCCCcee--cCHHH-HHhhh------------------cHHHHHHHHHHcCCCCCCEEEeCCHHHHHH---HHHH
Confidence 456777887777 66652 22211 1235789999999998 55667776665 3444
Q ss_pred cCCCCcEEEEEecC
Q psy7785 480 FKLSIPLVVRLEGT 493 (525)
Q Consensus 480 ~~~G~PVVlKi~~~ 493 (525)
+ .|||+|+|-...
T Consensus 133 ~-~~~P~VvKP~~g 145 (300)
T PRK10446 133 V-GGAPLVVKLVEG 145 (300)
T ss_pred h-CCCCEEEEECCC
Confidence 3 279999997544
No 168
>PF00549 Ligase_CoA: CoA-ligase; InterPro: IPR005811 This entry represents a domain found in both the alpha and beta chains of succinyl-CoA synthase (6.2.1.4 from EC (GDP-forming) and 6.2.1.5 from EC (ADP-forming)) [, ]. This domain can also be found in ATP citrate synthase (2.3.3.8 from EC) and malate-CoA ligase (6.2.1.9 from EC). Some members of the domain utilise ATP others use GTP.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3DMY_B 3MWE_B 3PFF_A 3MWD_B 2YV1_A 1EUC_A 2FP4_A 1EUD_A 2FPI_A 2FPG_A ....
Probab=86.48 E-value=1.3 Score=41.03 Aligned_cols=39 Identities=26% Similarity=0.266 Sum_probs=34.6
Q ss_pred CCcEEEEEecCChH-----HHHHhhhhCCCCceeccCHHHHHHHhH
Q psy7785 483 SIPLVVRLEGTNVQ-----EGKRILDESKLPLIFASDLDEAANWFI 523 (525)
Q Consensus 483 G~PVVlKi~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (525)
.-|||..++||+.+ +.+++|.+.|+.+ +++.++|+++|.
T Consensus 108 ~~pvVa~v~GT~~dpq~~~~~~~~L~~~G~~v--~~s~~~A~~~A~ 151 (153)
T PF00549_consen 108 KKPVVARVCGTNADPQGRMGQAGALEDAGVIV--AESNAQAARAAG 151 (153)
T ss_dssp -SEEEEEEESTTCHTTSCHHHHHHHHCTTCSC--HHHHHHHHHHHT
T ss_pred CCcEEEEeeeecCCCCCcHHHHHHHHhCCCcc--cccHHHHHHHcC
Confidence 46999999999999 9999999988666 999999998874
No 169
>TIGR01435 glu_cys_lig_rel glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type. gamma-glutamyltripeptides of the form gamma-Glu-Cys-X(aa). The N-terminal region is similar to proteobacterial glutamate-cysteine ligase. The C-terminal region is homologous to cyanophycin synthetase of cyanobacteria and, more distantly, to D-alanine-D-alanine ligases. Members of this family are found in Listeria and Enterococcus, Gram-positive lineages in which glutathione is produced (see PUBMED:8606174), and in Pasteurella multocida, a Proteobacterium. In Clostridium acetobutylicum, adjacent genes include separate proteins rather than a fusion protein.
Probab=86.06 E-value=0.7 Score=53.13 Aligned_cols=52 Identities=25% Similarity=0.199 Sum_probs=39.4
Q ss_pred HHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhh
Q psy7785 448 QEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILD 503 (525)
Q Consensus 448 ~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~ 503 (525)
..+|++|+++|||| ..+.+.+++.+ .+.++ .|||||+|=.+.+-..|.-+..
T Consensus 477 ~~TK~iL~~aGIPVP~g~~~~~~~~a~~---~~~~~-~g~PVVVKP~~g~~G~GVsi~~ 531 (737)
T TIGR01435 477 VVTKKVLAEAGFRVPFGDEFSSQALALE---AFSLF-ENKAIVVKPKSTNYGLGITIFK 531 (737)
T ss_pred HHHHHHHHHcCcCCCCEEEECCHHHHHH---HHHHh-cCCCEEEeeCCCCCcCCeEEec
Confidence 46899999999999 67788877776 34443 2799999988877766665443
No 170
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=85.83 E-value=1.9 Score=34.54 Aligned_cols=51 Identities=20% Similarity=0.408 Sum_probs=45.0
Q ss_pred HHHHHHHHCCCCeEEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCc
Q psy7785 449 EGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL 509 (525)
Q Consensus 449 eak~LL~ayGIpv~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~ 509 (525)
.+.++|++.||++.+..++.+.-. |.=+++|+...+.++.+++|+++|+.+
T Consensus 16 ~~ek~lk~~gi~~~liP~P~~i~~----------~CG~al~~~~~d~~~i~~~l~~~~i~~ 66 (73)
T PF11823_consen 16 KAEKLLKKNGIPVRLIPTPREISA----------GCGLALRFEPEDLEKIKEILEENGIEY 66 (73)
T ss_pred HHHHHHHHCCCcEEEeCCChhccC----------CCCEEEEEChhhHHHHHHHHHHCCCCe
Confidence 577899999999999999986532 899999999999999999999998776
No 171
>PRK14570 D-alanyl-alanine synthetase A; Provisional
Probab=85.66 E-value=5.2 Score=42.35 Aligned_cols=66 Identities=17% Similarity=0.131 Sum_probs=41.8
Q ss_pred HHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEc------ChhHHHHHH
Q psy7785 404 RILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFAS------DLDEAASLV 474 (525)
Q Consensus 404 ~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~------s~deAv~~~ 474 (525)
..|+..|||+. .+...+....+ +-..+|++|+++|||+ .... +.+++...
T Consensus 107 glle~~giPy~--Gs~~~asal~~------------------DK~~tK~~l~~~GIpt~p~~~~~~~~~~~~~~~~~~~- 165 (364)
T PRK14570 107 GFLKVMDIPCV--GAGILGSAISI------------------NKYFCKLLLKSFNIPLVPFIGFRKYDYFLDKEGIKKD- 165 (364)
T ss_pred HHHHHcCCCcc--CCCHHHHHHHH------------------CHHHHHHHHHHcCCCCCCEEEEeccccccchHHHHHH-
Confidence 47788899998 54433322211 2336899999999998 2222 34555432
Q ss_pred HHhhhcCCCCcEEEEEecC
Q psy7785 475 NACKSFKLSIPLVVRLEGT 493 (525)
Q Consensus 475 ~aa~~~~~G~PVVlKi~~~ 493 (525)
....+ ||||++|-...
T Consensus 166 -~~~~l--g~PviVKP~~~ 181 (364)
T PRK14570 166 -IKEVL--GYPVIVKPAVL 181 (364)
T ss_pred -HHHhc--CCCEEEEeCCC
Confidence 23454 99999999763
No 172
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=84.35 E-value=10 Score=40.35 Aligned_cols=79 Identities=19% Similarity=0.322 Sum_probs=57.0
Q ss_pred HHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe--EEEcChhHHHHHHHHhhhcCC
Q psy7785 405 ILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL--IFASDLDEAASLVNACKSFKL 482 (525)
Q Consensus 405 ~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv--~lA~s~deAv~~~~aa~~~~~ 482 (525)
.|.+.||++. -+.-+++...- +-...++.++..|+|+ .++.+.+++.+ ...+ +
T Consensus 95 ~l~~~gV~vv--gs~~eaI~iae------------------Dr~~fke~m~eigi~~P~~~~~~~~e~~~---~~~~--i 149 (400)
T COG0458 95 VLEKYGVEVV--GSDPEAIEIAE------------------DKKLFKEAMREIGIPVPSRIAHSVEEADE---IADE--I 149 (400)
T ss_pred chhhcCCEEE--ecCHHHhhhhh------------------hHHHHHHHHHHcCCCCCccccccHHHHhh---hHhh--c
Confidence 4566688888 66666654432 2235789999999999 78999999998 4556 4
Q ss_pred CCcEEEEE----------ecCChHHHHHhhhh-CCCC
Q psy7785 483 SIPLVVRL----------EGTNVQEGKRILDE-SKLP 508 (525)
Q Consensus 483 G~PVVlKi----------~~~~~~~~~~~~~~-~~~~ 508 (525)
||||++|- .-.|.+|=+++... .+.+
T Consensus 150 g~PvIVrP~~~lGG~G~~i~~n~eel~~~~~~~l~~s 186 (400)
T COG0458 150 GYPVIVKPSFGLGGSGGGIAYNEEELEEIIEEGLRAS 186 (400)
T ss_pred CCCEEEecCcCCCCCceeEEeCHHHHHHHHHhccccC
Confidence 99999995 23477777777776 4433
No 173
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=84.35 E-value=1.2 Score=47.11 Aligned_cols=39 Identities=18% Similarity=0.401 Sum_probs=32.4
Q ss_pred HHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEec
Q psy7785 449 EGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEG 492 (525)
Q Consensus 449 eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~ 492 (525)
.-|++|+++|||+ ..+.+.+++.+ +++++ |||+|+|-..
T Consensus 103 ~~k~~l~~~Gip~p~~~~v~s~~~l~~---~~~~~--g~P~vlKp~~ 144 (372)
T PRK06019 103 TEKQFLDKLGIPVAPFAVVDSAEDLEA---ALADL--GLPAVLKTRR 144 (372)
T ss_pred HHHHHHHHCCCCCCCceEeCCHHHHHH---HHHHc--CCcEEEEeCC
Confidence 5788999999999 78889888876 45564 9999999963
No 174
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=82.26 E-value=41 Score=31.36 Aligned_cols=122 Identities=15% Similarity=0.146 Sum_probs=70.5
Q ss_pred cEEEEec------chhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEE--ec-ccccC----
Q psy7785 303 NIGCLVN------GAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVN--VF-GGIVN---- 369 (525)
Q Consensus 303 rIaIitn------sGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~--~~-~~~~~---- 369 (525)
||+||.. .-.+=--+.|.+..+|.+..|. |+.--+-.-.+.-+++.+++..++|+++.. +. |....
T Consensus 12 riaIV~srfn~~It~~Ll~gA~~~l~~~G~~~~~i-~v~~VPGA~EiP~~a~~l~~~~~yDaiIaLG~VIrGeT~H~e~V 90 (158)
T PRK12419 12 RIAFIQARWHADIVDQARKGFVAEIAARGGAASQV-DIFDVPGAFEIPLHAQTLAKTGRYAAIVAAALVVDGGIYRHEFV 90 (158)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccce-EEEECCcHHHHHHHHHHHHhcCCCCEEEEEEEEEcCCCchhHHH
Confidence 6666653 1223333678888999876665 544333333456667777888889999973 22 33333
Q ss_pred hHHHHHHHHHHHHhcCCCCcEEEEeCCc-chHHH--HHHHhhCCCCccccCCHHHHHHHHHHhhc
Q psy7785 370 CATIAKGLVNACKSFKLSIPLVVRLEGT-NVQEG--KRILDESKLPLIFASDLDEAASLVNACKS 431 (525)
Q Consensus 370 ~~~ia~~i~~a~~~~~~~kPivv~~~g~-~~~~~--~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~ 431 (525)
+..++++|.+..-+ +++||....... +.+++ ++-+...|.- .--.+|+.++.++..
T Consensus 91 ~~~v~~gl~~vsl~--~~~PV~fGVLT~~~~eqA~~rqa~~Ra~~~----nKG~eaA~aalem~~ 149 (158)
T PRK12419 91 AQAVIDGLMRVQLD--TEVPVFSVVLTPHHFHESEEHHDFFRAHFV----VKGAEAAHACADTLL 149 (158)
T ss_pred HHHHHHHHHHHHhc--cCCCEEEEecCCCcHHHHHHHHHHhhcCcc----ccHHHHHHHHHHHHH
Confidence 34556666666555 789998765543 33333 3344445543 334566666655543
No 175
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=81.49 E-value=62 Score=32.53 Aligned_cols=62 Identities=13% Similarity=0.221 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHCCCCeEEEcChhHH---HHHHHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCc--eeccCHHHHHH
Q psy7785 446 NVQEGKRILDESKLPLIFASDLDEA---ASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL--IFASDLDEAAN 520 (525)
Q Consensus 446 ~e~eak~LL~ayGIpv~lA~s~deA---v~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 520 (525)
+.+.=++|++.|||.+.++++.-.+ -++.++|.++ |.||+| ++++.++| .++++++++++
T Consensus 185 s~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~l--gi~viv-------------I~RP~~~~~~~~~~~~~el~~ 249 (256)
T TIGR00715 185 SEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEAL--GINVIR-------------IARPQTIPGVAIFDDISQLNQ 249 (256)
T ss_pred CHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHc--CCcEEE-------------EeCCCCCCCCccCCCHHHHHH
Confidence 5556689999999999888877444 4556788886 999987 33444443 35788888887
Q ss_pred Hh
Q psy7785 521 WF 522 (525)
Q Consensus 521 ~~ 522 (525)
|-
T Consensus 250 ~l 251 (256)
T TIGR00715 250 FV 251 (256)
T ss_pred HH
Confidence 63
No 176
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=81.19 E-value=3.1 Score=43.46 Aligned_cols=65 Identities=11% Similarity=0.189 Sum_probs=40.5
Q ss_pred HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS 479 (525)
Q Consensus 403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~ 479 (525)
...|+..|+|++ .+...+.... .+-...|++|+++|||+ ....+.++. . .+.
T Consensus 109 q~lle~~gipy~--G~~~~asai~------------------~DK~~~k~~l~~~GIp~p~~~~~~~~~~~-~----~~~ 163 (343)
T PRK14568 109 QGLLELSGIPYV--GCDIQSSALC------------------MDKSLAYIVAKNAGIATPAFWTVTADERP-D----AAT 163 (343)
T ss_pred HHHHHHcCCCcc--CCCHHHHHHH------------------hCHHHHHHHHHHcCcCcCCEEEEECCchh-h----hhh
Confidence 347788899988 4433322211 11235799999999999 444444432 1 234
Q ss_pred cCCCCcEEEEEecCC
Q psy7785 480 FKLSIPLVVRLEGTN 494 (525)
Q Consensus 480 ~~~G~PVVlKi~~~~ 494 (525)
.|||+|+|=....
T Consensus 164 --l~~P~iVKP~~~g 176 (343)
T PRK14568 164 --LTYPVFVKPARSG 176 (343)
T ss_pred --cCCCEEEEeCCCC
Confidence 3999999965544
No 177
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=80.82 E-value=5.1 Score=37.89 Aligned_cols=67 Identities=22% Similarity=0.280 Sum_probs=39.6
Q ss_pred CCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEe-CCcccHHHHHHHHhccccccccCCCCC
Q psy7785 24 STDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFT-NNVQDIPPILEKMIGHKLITKQTPKTG 102 (525)
Q Consensus 24 vp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~-~~~eea~~a~~~l~~~~~~~~~~~~~g 102 (525)
+|++.+.++.++..++.++.+. +|||+-.-.+|+ ||..- .+.......++.+... +
T Consensus 12 ~P~T~vs~~~~~i~~f~~~~~~--~VlKPl~g~gG~-----------gV~~i~~~~~n~~~i~e~~~~~----------~ 68 (173)
T PF02955_consen 12 IPPTLVSRDKEEIRAFIEEHGD--IVLKPLDGMGGR-----------GVFRISRDDPNLNSILETLTKN----------G 68 (173)
T ss_dssp S--EEEES-HHHHHHHHHHHSS--EEEEESS--TTT-----------T-EEE-TT-TTHHHHHHHHTTT----------T
T ss_pred CcCEEEECCHHHHHHHHHHCCC--EEEEECCCCCCc-----------CEEEEcCCCCCHHHHHHHHHhc----------C
Confidence 5889999999999999999884 999997666654 34443 4444455555444321 1
Q ss_pred cccCeEEEEeeeC
Q psy7785 103 INVNKVMVAKSVN 115 (525)
Q Consensus 103 ~~~~~vlVee~~~ 115 (525)
-..+++|+|++
T Consensus 69 --~~~~mvQ~flp 79 (173)
T PF02955_consen 69 --ERPVMVQPFLP 79 (173)
T ss_dssp --TS-EEEEE--G
T ss_pred --CccEEEEeccc
Confidence 25799999997
No 178
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=80.62 E-value=3.6 Score=48.24 Aligned_cols=73 Identities=14% Similarity=0.189 Sum_probs=44.5
Q ss_pred HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEc------ChhHHHHH
Q psy7785 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFAS------DLDEAASL 473 (525)
Q Consensus 403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~------s~deAv~~ 473 (525)
...|+..|||+. .+...+.... .+-..+|++|+.+|||+ ...+ +.+++..
T Consensus 545 q~~le~~gipy~--Gs~~~asal~------------------~DK~~~K~~l~~~GIpt~~~~~~~~~~~~~~~~~~~~- 603 (809)
T PRK14573 545 QGFLEIIGKPYT--GPSLAFSAIA------------------MDKVLTKRFASDVGVPVVPYQPLTLAGWKREPELCLA- 603 (809)
T ss_pred HHHHHHcCCCee--CCCHHHHHHH------------------cCHHHHHHHHHHCCCCCCCEEEEechhcccChHHHHH-
Confidence 457888999988 4333222211 12346899999999999 3333 2233322
Q ss_pred HHHhhhcCCCCcEEEEEecCChHHHH
Q psy7785 474 VNACKSFKLSIPLVVRLEGTNVQEGK 499 (525)
Q Consensus 474 ~~aa~~~~~G~PVVlKi~~~~~~~~~ 499 (525)
+..+++ |||+++|=....-+.|.
T Consensus 604 -~~~~~l--g~P~iVKP~~~GsS~Gv 626 (809)
T PRK14573 604 -HIVEAF--SFPMFVKTAHLGSSIGV 626 (809)
T ss_pred -HHHHhc--CCCEEEeeCCCCCCCCE
Confidence 134564 99999999775544443
No 179
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=80.03 E-value=6.5 Score=40.14 Aligned_cols=69 Identities=19% Similarity=0.237 Sum_probs=41.9
Q ss_pred HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEc-ChhHHHHH--HHH
Q psy7785 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFAS-DLDEAASL--VNA 476 (525)
Q Consensus 403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~-s~deAv~~--~~a 476 (525)
...++..|+|++ .+...++.... +-...+++|+++|||+ ..+. +.++.... ...
T Consensus 82 ~~~le~~gip~~--g~~~~~~~~~~------------------dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~~~~~~~ 141 (315)
T TIGR01205 82 QGLLELMGIPYT--GSGVLASALSM------------------DKLLTKLLWKALGLPTPDYIVLTQNRASADELECEQV 141 (315)
T ss_pred HHHHHHcCCCcc--CCCHHHHHHHH------------------CHHHHHHHHHHCCCCCCCEEEEecccccchhhhHHHH
Confidence 457888999998 55444333221 1236889999999999 4444 43322110 012
Q ss_pred hhhcCCCCcEEEEEecC
Q psy7785 477 CKSFKLSIPLVVRLEGT 493 (525)
Q Consensus 477 a~~~~~G~PVVlKi~~~ 493 (525)
... .|||+|+|=...
T Consensus 142 ~~~--~~~P~vvKP~~~ 156 (315)
T TIGR01205 142 AEP--LGFPVIVKPARE 156 (315)
T ss_pred HHh--cCCCEEEEeCCC
Confidence 235 499999997654
No 180
>PLN02941 inositol-tetrakisphosphate 1-kinase
Probab=79.62 E-value=5.4 Score=41.63 Aligned_cols=64 Identities=14% Similarity=0.161 Sum_probs=39.7
Q ss_pred HHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCC-------CCe---EEEcChhHHHHHH
Q psy7785 405 ILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESK-------LPL---IFASDLDEAASLV 474 (525)
Q Consensus 405 ~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayG-------Ipv---~lA~s~deAv~~~ 474 (525)
.++..|+|+. +.+ +++..+..- ....++|+..| ||+ .++.+.+.|....
T Consensus 87 ~~e~pgv~vi--dp~-~ai~~~~dR------------------~~~~~~L~~~~~~~~~~~i~~P~t~v~~~~~~al~~~ 145 (328)
T PLN02941 87 REKHPDVTVL--DPP-DAIQRLHNR------------------QSMLQVVADLKLSDGYGSVGVPKQLVVYDDESSIPDA 145 (328)
T ss_pred HHHCCCcEEE--CCH-HHHHHHHHH------------------HHHHHHHHHcCCcccCCCCCCCCEEEEcCHHHHHHHH
Confidence 4556899988 444 444444321 13455677777 777 6677776666433
Q ss_pred HHhhhcCCCCcEEEEEe
Q psy7785 475 NACKSFKLSIPLVVRLE 491 (525)
Q Consensus 475 ~aa~~~~~G~PVVlKi~ 491 (525)
.+... .|||+|+|=.
T Consensus 146 ~~~~~--l~~P~V~KPl 160 (328)
T PLN02941 146 VALAG--LKFPLVAKPL 160 (328)
T ss_pred HHHhc--CCCCEEEeec
Confidence 34455 4999999963
No 181
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=79.41 E-value=3 Score=38.50 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=31.9
Q ss_pred HHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChH
Q psy7785 448 QEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQ 496 (525)
Q Consensus 448 ~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~ 496 (525)
...+++++.+|||+ ..+.+.+++.+ .+..+ |||+|+|-....-.
T Consensus 6 ~~~~~~~~~~gv~~P~~~~~~~~~~~~~---~~~~~--~~p~vvKp~~g~gs 52 (184)
T PF13535_consen 6 YRMRELLKKAGVPVPKTRIVDSEEELRA---FAEDL--GFPFVVKPVDGSGS 52 (184)
T ss_dssp HHHHHHHHHHTS----EEEECSHHHHHH---HHHHS--SSSEEEEESS-STT
T ss_pred HHHHHHHHHcCcCCCCEEEECCHHHHHH---HHHHc--CCCEEEEcCccccC
Confidence 45788999999998 77888888777 45563 89999998766443
No 182
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=79.26 E-value=17 Score=39.53 Aligned_cols=88 Identities=19% Similarity=0.354 Sum_probs=56.6
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCC-CCCeee-----ecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc------c
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGGE-PANFLD-----VGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI------V 368 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~-~aNPlD-----l~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~------~ 368 (525)
..+|||||...|+|+ -|.+.-..-. |.-.+. +-|.-.+..+..+++.+...+++|.|+|.=.||. .
T Consensus 129 p~~i~vits~~~aa~--~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~F 206 (432)
T TIGR00237 129 PKRVGVITSQTGAAL--ADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWSF 206 (432)
T ss_pred CCEEEEEeCCccHHH--HHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhhc
Confidence 469999999998876 4766554432 221222 3466556678999998887778998887644442 2
Q ss_pred ChHHHHHHHHHHHHhcCCCCcEEEEeCC
Q psy7785 369 NCATIAKGLVNACKSFKLSIPLVVRLEG 396 (525)
Q Consensus 369 ~~~~ia~~i~~a~~~~~~~kPivv~~~g 396 (525)
+.+.++++| .. ++.||+...+.
T Consensus 207 n~e~~~rai----~~--~~~Pvis~iGH 228 (432)
T TIGR00237 207 NDEKVARAI----FL--SKIPIISAVGH 228 (432)
T ss_pred CcHHHHHHH----Hc--CCCCEEEecCc
Confidence 334445544 33 78999865443
No 183
>PRK07206 hypothetical protein; Provisional
Probab=78.67 E-value=7.9 Score=41.28 Aligned_cols=41 Identities=27% Similarity=0.355 Sum_probs=32.1
Q ss_pred HHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCC---cEEEEEecC
Q psy7785 448 QEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSI---PLVVRLEGT 493 (525)
Q Consensus 448 ~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~---PVVlKi~~~ 493 (525)
..-+++|.++|||+ ..+.+.+++.+ .++++ || |+|+|=...
T Consensus 110 ~~~r~~l~~~gi~~p~~~~~~~~~e~~~---~~~~~--g~~~~P~VvKP~~g 156 (416)
T PRK07206 110 AEMINALAEAGLPAARQINTADWEEAEA---WLREN--GLIDRPVVIKPLES 156 (416)
T ss_pred HHHHHHHHHcCCCcccEEecCCHHHHHH---HHHhc--CCCCCCEEEeCCCC
Confidence 46788999999999 66788888876 34553 77 999998654
No 184
>PF02655 ATP-grasp_3: ATP-grasp domain; InterPro: IPR003806 The ATP-grasp fold is one of several distinct ATP-binding folds, and is found in enzymes that catalyze the formation of amide bonds, catalyzing the ATP-dependent ligation of a carboxylate-containing molecule to an amino or thiol group-containing molecule []. This fold is found in many different enzyme families, including various peptide synthetases, biotin carboxylase, synapsin, succinyl-CoA synthetase, pyruvate phosphate dikinase, and glutathione synthetase, amongst others []. These enzymes contribute predominantly to macromolecular synthesis, using ATP-hydrolysis to activate their substrates. The ATP-grasp fold shares functional and structural similarities with the PIPK (phosphatidylinositol phosphate kinase) and protein kinase superfamilies. The ATP-grasp domain consists of two subdomains with different alpha+beta folds, which grasp the ATP molecule between them. Each subdomain provides a variable loop that forms part of the active site, with regions from other domains also contributing to the active site, even though these other domains are not conserved between the various ATP-grasp enzymes []. This entry describes a type of ATP-grasp fold that is found in a set of proteins of unknown function.; GO: 0005524 ATP binding, 0046872 metal ion binding; PDB: 3DF7_A.
Probab=76.58 E-value=2.9 Score=38.74 Aligned_cols=28 Identities=4% Similarity=0.030 Sum_probs=17.3
Q ss_pred EEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 109 MVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 109 lVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
++||+++ |.++.+.+..+..- ..++.+.
T Consensus 65 i~Qe~i~-G~~~Sv~~l~~~~~-~~~l~~~ 92 (161)
T PF02655_consen 65 IVQEFIE-GEPYSVSFLASGGG-ARLLGVN 92 (161)
T ss_dssp EEEE----SEEEEEEEEE-SSS-EEEEEEE
T ss_pred EEeeeeC-CEEeEEEEEEeCCc-eEEEEec
Confidence 8999997 78999999988654 3344333
No 185
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=75.97 E-value=50 Score=30.57 Aligned_cols=105 Identities=18% Similarity=0.280 Sum_probs=65.4
Q ss_pred HHHHHHHcCCCCCCee--eecCCCCHHHHHHHHHHHhcCCCccEEEEE---ecccccC----hHHHHHHHHHHHHhcCCC
Q psy7785 317 TMDIIKLHGGEPANFL--DVGGGVNEESIIQAFRIISSDSNVKCILVN---VFGGIVN----CATIAKGLVNACKSFKLS 387 (525)
Q Consensus 317 aaD~~~~~Gl~~aNPl--Dl~g~a~~~~~~~al~~ll~dp~vd~vlv~---~~~~~~~----~~~ia~~i~~a~~~~~~~ 387 (525)
+.|.+.++|....|+- .+-|.. .+.-+.+.|.+..++|+++.. +-|+... +.+.+++|.+..-+ ++
T Consensus 34 A~~~l~~~G~~~~~i~vv~VPGa~---EiPl~a~~La~~~~yDAvv~lG~VIrG~T~Hfd~Va~~~~~gl~~vsl~--~~ 108 (152)
T COG0054 34 AVDALKRHGADVDNIDVVRVPGAF---EIPLAAKKLARTGKYDAVVALGAVIRGETYHFDYVANEVARGLMDVSLE--TG 108 (152)
T ss_pred HHHHHHHcCCCcccceEEEeCCcc---hhHHHHHHHHhcCCcceEEEEeeEEeCCCccHHHHHHHHHHHHHHHHHh--hC
Confidence 5688888888887653 333432 244678888888999999973 2233332 35667888887766 78
Q ss_pred CcEEEEeCCc-chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhc
Q psy7785 388 IPLVVRLEGT-NVQEGKRILDESKLPLIFASDLDEAASLVNACKS 431 (525)
Q Consensus 388 kPivv~~~g~-~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~ 431 (525)
+||.....++ +.+++ +..+|+.-= .--.+|+.+..++.+
T Consensus 109 ~PV~~GVLt~~~~eqA---~~rag~~~g--nkG~~Aa~aAlem~~ 148 (152)
T COG0054 109 VPVTFGVLTTDNIEQA---IERAGTKAG--NKGAEAAEAALEMAN 148 (152)
T ss_pred CCeEeeecCCCcHHHH---HHHhCcccc--ccHHHHHHHHHHHHH
Confidence 9998765554 43333 334455321 234566666666543
No 186
>PF08443 RimK: RimK-like ATP-grasp domain; InterPro: IPR013651 This ATP-grasp domain is found in the ribosomal S6 modification enzyme RimK []. It has an unusual nucleotide-binding fold referred to as palmate, or ATP-grasp fold. This domain is found in a number of enzymes of known structure as well as in urea amidolyase, tubulin-tyrosine ligase, and three enzymes of purine biosynthesis.; PDB: 1UC8_B 1UC9_A.
Probab=75.95 E-value=3.3 Score=39.38 Aligned_cols=42 Identities=14% Similarity=0.279 Sum_probs=27.0
Q ss_pred HHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785 449 EGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN 494 (525)
Q Consensus 449 eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~ 494 (525)
-..++|+.+|||+ .++.+.+++.+. .+++ .+||+|+|-....
T Consensus 6 ~~~~~l~~~gipvP~t~~~~~~~~~~~~---~~~~-~~~p~ViKp~~g~ 50 (190)
T PF08443_consen 6 LTLQLLAKAGIPVPETRVTNSPEEAKEF---IEEL-GGFPVVIKPLRGS 50 (190)
T ss_dssp HHHHHHHHTT-----EEEESSHHHHHHH---HHHH---SSEEEE-SB--
T ss_pred HHHHHHHHCCcCCCCEEEECCHHHHHHH---HHHh-cCCCEEEeeCCCC
Confidence 3678999999999 778888888874 4453 1799999987554
No 187
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=74.24 E-value=13 Score=34.91 Aligned_cols=62 Identities=26% Similarity=0.377 Sum_probs=40.7
Q ss_pred eecCCCCHHHHHHHHHHHhcCCCccEEEEEec--ccc-cChHHHHHHHHHHHHhcCCCCcEEEEeCCc
Q psy7785 333 DVGGGVNEESIIQAFRIISSDSNVKCILVNVF--GGI-VNCATIAKGLVNACKSFKLSIPLVVRLEGT 397 (525)
Q Consensus 333 Dl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~--~~~-~~~~~ia~~i~~a~~~~~~~kPivv~~~g~ 397 (525)
|..+..+.+.+.++++.+.+||++.+|++.+. ++. .....+.+. ++..+. .+|||++...|.
T Consensus 17 ~~~~~~~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~-i~~~~~--~~kpVia~v~G~ 81 (177)
T cd07014 17 DTQGNVSGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAE-LAAARA--AGKPVVASGGGN 81 (177)
T ss_pred CCCCCcCHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHH-HHHHHh--CCCCEEEEECCc
Confidence 45566677789999999999999999998543 221 112222222 222333 689999877764
No 188
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=74.19 E-value=71 Score=29.22 Aligned_cols=117 Identities=16% Similarity=0.144 Sum_probs=65.0
Q ss_pred cEEEEecc------hhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEE--eccc-ccC----
Q psy7785 303 NIGCLVNG------AGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVN--VFGG-IVN---- 369 (525)
Q Consensus 303 rIaIitns------GG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~--~~~~-~~~---- 369 (525)
||+||... -.+=--+.|.+..+|.+..|. |+---+-.-.+.-+++.+++..++|+++.. +.-| ...
T Consensus 9 ri~IV~s~fn~~I~~~Ll~ga~~~l~~~gv~~~~i-~v~~VPGa~EiP~a~~~l~~s~~~DavIaLG~VIrGeT~H~e~V 87 (141)
T PLN02404 9 RFGVVVARFNEIITKNLLEGALETFKRYSVKEENI-DVVWVPGSFEIPVVAQRLAKSGKYDAILCIGAVIRGDTTHYDAV 87 (141)
T ss_pred EEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccce-EEEEcCcHHHHHHHHHHHHhcCCCCEEEEEEEEEeCCCchhHHH
Confidence 66666542 233334667888888775553 222112223355667777787889999973 2233 332
Q ss_pred hHHHHHHHHHHHHhcCCCCcEEEEeCCc-chHHHHHHHhhCCCCccccCCHHHHHHHHH
Q psy7785 370 CATIAKGLVNACKSFKLSIPLVVRLEGT-NVQEGKRILDESKLPLIFASDLDEAASLVN 427 (525)
Q Consensus 370 ~~~ia~~i~~a~~~~~~~kPivv~~~g~-~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~ 427 (525)
|..++++|.+..-+ +++||.....+. +.+++. .+.|...- +--.+|+.+..
T Consensus 88 ~~~v~~gl~~vsl~--~~~PV~~GVLt~~~~eQA~---~Rag~~~~--nkG~eaA~aal 139 (141)
T PLN02404 88 ANSAASGVLSAGLN--SGVPCIFGVLTCDDMEQAL---NRAGGKAG--NKGAEAALTAV 139 (141)
T ss_pred HHHHHHHHHHHHhc--cCCCEEEEEcCCCCHHHHH---HHhCCccc--CcHHHHHHHHH
Confidence 35566777776555 789998765443 444433 33443322 33445554443
No 189
>PRK10949 protease 4; Provisional
Probab=72.72 E-value=8.4 Score=43.71 Aligned_cols=78 Identities=26% Similarity=0.444 Sum_probs=53.6
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEE--eccc-ccChHHHHHHH
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVN--VFGG-IVNCATIAKGL 377 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~--~~~~-~~~~~~ia~~i 377 (525)
+++||||+..|-.. .|-+ -.|....+.+.+.++...+||+|.+|++- .++| ....+.+.+.|
T Consensus 325 ~~~Iavi~~~G~I~---------~g~~------~~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i 389 (618)
T PRK10949 325 GGSIAVIFANGAIM---------DGEE------TPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAEL 389 (618)
T ss_pred CCeEEEEEEEEEEc---------CCCC------cCCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHH
Confidence 46899999888541 0111 12445567899999999999999999984 4555 34456677776
Q ss_pred HHHHHhcCCCCcEEEEeCC
Q psy7785 378 VNACKSFKLSIPLVVRLEG 396 (525)
Q Consensus 378 ~~a~~~~~~~kPivv~~~g 396 (525)
.++ ++ .+|||+++..+
T Consensus 390 ~~~-r~--~gKPVvas~~~ 405 (618)
T PRK10949 390 AAA-RA--AGKPVVVSMGG 405 (618)
T ss_pred HHH-Hh--cCCcEEEEECC
Confidence 664 33 57999986543
No 190
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=71.27 E-value=24 Score=36.04 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=29.9
Q ss_pred HHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEec
Q psy7785 449 EGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEG 492 (525)
Q Consensus 449 eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~ 492 (525)
..+++|..+|||+ ..+.+.+++.+.. .+.+ .|||+|+|=..
T Consensus 114 ~~~~~l~~~gip~p~~~~~~~~~~~~~~~-~~~~--~~~P~viKP~~ 157 (326)
T PRK12767 114 LTYEFLKENGIPTPKSYLPESLEDFKAAL-AKGE--LQFPLFVKPRD 157 (326)
T ss_pred HHHHHHHHcCCCCCCEEcccCHHHHHhhh-hccc--CCCCEEEEeCC
Confidence 5788999999999 5667877776521 1334 49999999653
No 191
>PLN02775 Probable dihydrodipicolinate reductase
Probab=70.34 E-value=56 Score=33.47 Aligned_cols=121 Identities=12% Similarity=0.075 Sum_probs=74.5
Q ss_pred cEEEEecchhHHHHHHHHHHHcCCCCCCeee-----------ecCC-CC---HHHHHHHHHHHhcCCCccEEEEEecccc
Q psy7785 303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLD-----------VGGG-VN---EESIIQAFRIISSDSNVKCILVNVFGGI 367 (525)
Q Consensus 303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlD-----------l~g~-a~---~~~~~~al~~ll~dp~vd~vlv~~~~~~ 367 (525)
+|+|....|=.|-.++.++...+++..--+| +.|. .. +....++++.+.++ ..|.|+|- |+.
T Consensus 13 ~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~-~~~~VvID-FT~- 89 (286)
T PLN02775 13 PIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAE-YPNLIVVD-YTL- 89 (286)
T ss_pred eEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhcc-CCCEEEEE-CCC-
Confidence 8999999999999999999887775332233 3221 00 13355666554333 35655653 321
Q ss_pred cChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhc
Q psy7785 368 VNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKS 431 (525)
Q Consensus 368 ~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~ 431 (525)
.......++.+.+ .++|+|+...|-..++-.+...+.++|++.++++.-.+..+.++.+
T Consensus 90 ---P~a~~~~~~~~~~--~g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSiGv~ll~~l~~ 148 (286)
T PLN02775 90 ---PDAVNDNAELYCK--NGLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGKQVVAFQAAME 148 (286)
T ss_pred ---hHHHHHHHHHHHH--CCCCEEEECCCCCHHHHHHHHhcCCccEEEECcccHHHHHHHHHHH
Confidence 2333445555555 6899998877754443333444569999877777777777776653
No 192
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=70.29 E-value=14 Score=38.26 Aligned_cols=56 Identities=29% Similarity=0.424 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHhcCCCccEEEE--Eecccc-cChHHHHHHHHHHHHhcCCCCcEEEEeCC
Q psy7785 337 GVNEESIIQAFRIISSDSNVKCILV--NVFGGI-VNCATIAKGLVNACKSFKLSIPLVVRLEG 396 (525)
Q Consensus 337 ~a~~~~~~~al~~ll~dp~vd~vlv--~~~~~~-~~~~~ia~~i~~a~~~~~~~kPivv~~~g 396 (525)
..+.+.+.+.++.+..||++++|++ |.+||. .....+++.|.+...+ ||+++...+
T Consensus 79 ~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~----~PV~v~v~~ 137 (317)
T COG0616 79 FIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAK----KPVVVSVGG 137 (317)
T ss_pred cccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhc----CCEEEEECC
Confidence 4567789999999999999999987 556663 3446666666665443 499876543
No 193
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=70.15 E-value=37 Score=36.74 Aligned_cols=87 Identities=21% Similarity=0.317 Sum_probs=54.2
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCC-CCCeeee-----cCCCCHHHHHHHHHHHhcCCCccEEEEEecccc------c
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGGE-PANFLDV-----GGGVNEESIIQAFRIISSDSNVKCILVNVFGGI------V 368 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~-~aNPlDl-----~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~------~ 368 (525)
..+|||||...|+|+ -|.+....-. |.--+.+ =|...+..+.++++.+...+ +|.|+|.=.||. .
T Consensus 135 p~~I~viTs~~gAa~--~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~-~Dviii~RGGGS~eDL~~F 211 (438)
T PRK00286 135 PKRIGVITSPTGAAI--RDILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARG-EDVLIVARGGGSLEDLWAF 211 (438)
T ss_pred CCEEEEEeCCccHHH--HHHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCC-CCEEEEecCCCCHHHhhcc
Confidence 469999999998885 5777655432 2111222 35555666888998876644 898887544442 2
Q ss_pred ChHHHHHHHHHHHHhcCCCCcEEEEeCC
Q psy7785 369 NCATIAKGLVNACKSFKLSIPLVVRLEG 396 (525)
Q Consensus 369 ~~~~ia~~i~~a~~~~~~~kPivv~~~g 396 (525)
+...++++|. . ++.||+...+.
T Consensus 212 n~e~v~~ai~----~--~~~Pvis~IGH 233 (438)
T PRK00286 212 NDEAVARAIA----A--SRIPVISAVGH 233 (438)
T ss_pred CcHHHHHHHH----c--CCCCEEEeccC
Confidence 3344555443 3 78998864433
No 194
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=70.06 E-value=21 Score=38.03 Aligned_cols=80 Identities=24% Similarity=0.321 Sum_probs=54.6
Q ss_pred eeccCCcEEEEecchhHHHHHHHHHHHcCCCCCCee-eecCCCCHHHHHHHHHHHhcCCCccEEEEEec---ccccChHH
Q psy7785 297 YVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFL-DVGGGVNEESIIQAFRIISSDSNVKCILVNVF---GGIVNCAT 372 (525)
Q Consensus 297 ~~~~~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPl-Dl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~---~~~~~~~~ 372 (525)
+++++++|.++.||- .|--.+|.++.+|.++...- +-+-.++++.+.++|+ ++|+++.|.+... +|..+.
T Consensus 76 l~~pgdkVLv~~nG~-FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~---~~~~~~~V~~vH~ETSTGvlnp-- 149 (383)
T COG0075 76 LVEPGDKVLVVVNGK-FGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALD---KDPDIKAVAVVHNETSTGVLNP-- 149 (383)
T ss_pred ccCCCCeEEEEeCCh-HHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHh---cCCCccEEEEEeccCcccccCc--
Confidence 467888999988876 99999999999998643221 1234456676777766 7999999887432 333332
Q ss_pred HHHHHHHHHHh
Q psy7785 373 IAKGLVNACKS 383 (525)
Q Consensus 373 ia~~i~~a~~~ 383 (525)
.+.|.+++++
T Consensus 150 -l~~I~~~~k~ 159 (383)
T COG0075 150 -LKEIAKAAKE 159 (383)
T ss_pred -HHHHHHHHHH
Confidence 3456666666
No 195
>KOG0368|consensus
Probab=68.75 E-value=33 Score=42.30 Aligned_cols=180 Identities=15% Similarity=0.155 Sum_probs=92.1
Q ss_pred CcEEEEecchhHHHHHHHHHHHcC---CCCCCeeeecCCCCHHHHHHHHHHH-hcCCCccEEEEEecccc-cChHHHHHH
Q psy7785 302 GNIGCLVNGAGLAMATMDIIKLHG---GEPANFLDVGGGVNEESIIQAFRII-SSDSNVKCILVNVFGGI-VNCATIAKG 376 (525)
Q Consensus 302 ~rIaIitnsGG~gvlaaD~~~~~G---l~~aNPlDl~g~a~~~~~~~al~~l-l~dp~vd~vlv~~~~~~-~~~~~ia~~ 376 (525)
.+|.|-+||= ++|-+.=.+...- +.-.+-+-..-.++++.+....+-+ +.|. +|-.++|. .+.-.-.+-
T Consensus 55 ~kILIAnNGi-AAvK~irSiRkWayetF~ner~I~FV~MaTpddl~anaeyIrmADq-----yvevPgGtNnNNyANVdl 128 (2196)
T KOG0368|consen 55 KRILIANNGI-AAVKCIRSIRKWAYETFGNERAIQFVCMATPDDLRANAEYIRMADQ-----YVEVPGGTNNNNYANVDL 128 (2196)
T ss_pred EEEEEecccH-HHHHHHHHHHHHHHHHhCCcceEEEEEecCHHHHHhhHHHhhhhhh-----eeeCCCCCCCCCcccHHH
Confidence 3667766653 4554444333321 2334556666677787754433332 2232 45556663 233344567
Q ss_pred HHHHHHhcCCCCcEEEEeCCc-chHHHHHHHhhCCCCccccCCHHHHHHHHHHh-hc----ccCCCCeEE---------E
Q psy7785 377 LVNACKSFKLSIPLVVRLEGT-NVQEGKRILDESKLPLIFASDLDEAASLVNAC-KS----FKLSIPLVV---------R 441 (525)
Q Consensus 377 i~~a~~~~~~~kPivv~~~g~-~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l-~~----~~~~~P~~~---------~ 441 (525)
|++.+..... -.|++.|+.. +.++--+.|.++||-.. .-|.+|+.++.-- .. ....+|... .
T Consensus 129 IvdiAe~~~V-dAVWaGWGHASENP~LPe~L~~~~IiFi--GPP~~aM~sLGDKI~STIvAQsa~vPtlpWSGS~v~~~~ 205 (2196)
T KOG0368|consen 129 IVDIAERTDV-DAVWAGWGHASENPELPERLSANGIIFI--GPPASAMRALGDKIASTIIAQSAGVPTLPWSGSGVKVEH 205 (2196)
T ss_pred HHHHHHhccc-ceEeecccccccCcchHHHHHhcCcEEE--CCchHHHHHhcchHHHHHHHHhcCCCcccccCCcceeee
Confidence 7777765211 1122334332 34555678999998666 6678888887532 11 112233211 0
Q ss_pred eCC-CCHHH-HHHHHHHCCCCeEEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHH
Q psy7785 442 LEG-TNVQE-GKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKR 500 (525)
Q Consensus 442 l~g-~~e~e-ak~LL~ayGIpv~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~ 500 (525)
... ++-.. =.++... ..++|.+|+++ +|+. +||||-+|..-.+--||+|
T Consensus 206 ~~~~~~~v~Vpedly~K-----acv~~~eegLe---aae~--IGfPvMIKASEGGGGKGIR 256 (2196)
T KOG0368|consen 206 IEDKTNLVSVPEDLYEK-----ACVRNVEEGLE---AAEK--IGFPVMIKASEGGGGKGIR 256 (2196)
T ss_pred ecccCCeEecCHHHhhh-----hhcCCHHHHHH---HHHh--cCCceEEEeccCCCCccee
Confidence 100 00000 0011111 45778899988 5667 4999999986555555543
No 196
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=68.42 E-value=5.1 Score=44.81 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=32.3
Q ss_pred HHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785 448 QEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN 494 (525)
Q Consensus 448 ~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~ 494 (525)
..++++|++.|||| ..+.+.+++.+ .++++ | |||+|-...+
T Consensus 299 ~~tk~lL~~aGIpVP~~~~~~~~~~~~~---~~~~~--G-~vVVKP~~G~ 342 (547)
T TIGR03103 299 RLTRRLVSEAGLQVPEQQLAGNGEAVEA---FLAEH--G-AVVVKPVRGE 342 (547)
T ss_pred HHHHHHHHHcCcCCCCEEEECCHHHHHH---HHHHh--C-CEEEEECCCC
Confidence 46899999999999 77888888776 45564 7 6999976654
No 197
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=67.09 E-value=1.5e+02 Score=30.19 Aligned_cols=169 Identities=10% Similarity=0.102 Sum_probs=89.5
Q ss_pred CCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cChH---HHHHHHHHHHHhcCCCCcEEEEeCCcchHHH
Q psy7785 329 ANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNCA---TIAKGLVNACKSFKLSIPLVVRLEGTNVQEG 402 (525)
Q Consensus 329 aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~~---~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~ 402 (525)
--|.|=-|+.+.+.+.+.++.+.+ .++++++++-..|. ...+ .+.+..++... .+.||++...+....++
T Consensus 9 ~TPf~~dg~iD~~~l~~lv~~~~~-~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~---g~~pvi~gv~~~~t~~a 84 (294)
T TIGR02313 9 ITPFKRNGDIDEEALRELIEFQIE-GGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIA---GRIPFAPGTGALNHDET 84 (294)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHH-cCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC---CCCcEEEECCcchHHHH
Confidence 346677788888989999999886 68999998654442 1222 23333333222 46888876665444444
Q ss_pred HH---HHhhCCC-------CccccCCHHHHHHHHHHhhcccCCCCeEE-EeCCCCHHHHHHHHHHCCCCeEEEcChhHHH
Q psy7785 403 KR---ILDESKL-------PLIFASDLDEAASLVNACKSFKLSIPLVV-RLEGTNVQEGKRILDESKLPLIFASDLDEAA 471 (525)
Q Consensus 403 ~~---~L~~~Gv-------pvf~~~s~~~Av~Al~~l~~~~~~~P~~~-~l~g~~e~eak~LL~ayGIpv~lA~s~deAv 471 (525)
.+ .-.+.|. |.|...+.+.-+..+..+.+.....|+.. ..++.+ |+ .-+.+...
T Consensus 85 i~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~t-----------g~----~l~~~~l~ 149 (294)
T TIGR02313 85 LELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIPGRA-----------AQ----EIAPKTMA 149 (294)
T ss_pred HHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCchhc-----------Cc----CCCHHHHH
Confidence 33 3345665 55533444444444444433111344332 111111 11 11233333
Q ss_pred HHHHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHHHHHH
Q psy7785 472 SLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAANW 521 (525)
Q Consensus 472 ~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (525)
+ .+++. .-=+-+|-.+.+...-.+++...+..+.++.-.|+....
T Consensus 150 ~---L~~~~--pnv~giK~ss~d~~~~~~~~~~~~~~~~v~~G~d~~~~~ 194 (294)
T TIGR02313 150 R---LRKDC--PNIVGAKESNKDFEHLNHLFLEAGRDFLLFCGIELLCLP 194 (294)
T ss_pred H---HHhhC--CCEEEEEeCCCCHHHHHHHHHhcCCCeEEEEcchHHHHH
Confidence 3 33332 223667888888887777766644455566666655443
No 198
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=65.69 E-value=46 Score=30.47 Aligned_cols=121 Identities=13% Similarity=0.131 Sum_probs=69.4
Q ss_pred cEEEEecc------hhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEe--ccccc-C----
Q psy7785 303 NIGCLVNG------AGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNV--FGGIV-N---- 369 (525)
Q Consensus 303 rIaIitns------GG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~--~~~~~-~---- 369 (525)
|||||..- ..+---+.|.+..+|.+..|.--++=.. .-.+.-+++.+++..++|++++.- .-|.+ .
T Consensus 5 ri~IV~s~~n~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPG-a~ElP~a~~~l~~~~~~Davi~lG~VI~G~T~H~~~v 83 (144)
T PF00885_consen 5 RIAIVVSRFNEEITDRLLEGALEELKRHGVAEENIEVIRVPG-AFELPLAAKRLAESGRYDAVIALGCVIRGETDHFEYV 83 (144)
T ss_dssp EEEEEEESTTHHHHHHHHHHHHHHHHHTTTTGGCEEEEEESS-GGGHHHHHHHHHHCSTESEEEEEEEEE--SSTHHHHH
T ss_pred EEEEEEEeccHHHHHHHHHHHHHHHHHcCCCccceEEEEcCC-HHHHHHHHHHHhcccCccEEEEeccccCCCchHHHHH
Confidence 56666532 2233336688888888766664443221 223566778888888999999742 33333 2
Q ss_pred hHHHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhc
Q psy7785 370 CATIAKGLVNACKSFKLSIPLVVRLEG-TNVQEGKRILDESKLPLIFASDLDEAASLVNACKS 431 (525)
Q Consensus 370 ~~~ia~~i~~a~~~~~~~kPivv~~~g-~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~ 431 (525)
+..+.+++.+..-+ +++||.....+ .+.+++.. ..|.-.. +--.+|+.++.++.+
T Consensus 84 ~~~v~~gl~~lsl~--~~~PV~~gvlt~~~~eqa~~---R~~~~~~--nkG~eaA~aal~m~~ 139 (144)
T PF00885_consen 84 ANAVSRGLMDLSLE--YGIPVIFGVLTPDTEEQALE---RAGGKAG--NKGREAAEAALEMAK 139 (144)
T ss_dssp HHHHHHHHHHHHHH--HTSEEEEEEEEESSHHHHHH---HCEETTE--EHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CCccEEEEecCCCCHHHHHH---Hhcchhh--hhHHHHHHHHHHHHH
Confidence 24555667666555 68999865444 34444444 3333333 445666766666543
No 199
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=64.53 E-value=28 Score=33.60 Aligned_cols=59 Identities=19% Similarity=0.301 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCc
Q psy7785 338 VNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGT 397 (525)
Q Consensus 338 a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~ 397 (525)
.+.+.+.++++.+.+|+++++|++.+.+..... .-.+.|.++.++.+.+||+++...|.
T Consensus 13 ~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~-~~~~~l~~~i~~~~~~kpvia~v~g~ 71 (207)
T TIGR00706 13 VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTV-VASEEIYEKLKKLKAKKPVVASMGGV 71 (207)
T ss_pred cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCH-HHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 346678999999999999999998543221111 12234445544432359999877664
No 200
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=63.28 E-value=1.7e+02 Score=29.33 Aligned_cols=164 Identities=12% Similarity=0.172 Sum_probs=85.7
Q ss_pred CeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cChH---HHHHHHHHHHHhcCCCCcEEEEeCCcchHHHH
Q psy7785 330 NFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNCA---TIAKGLVNACKSFKLSIPLVVRLEGTNVQEGK 403 (525)
Q Consensus 330 NPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~~---~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~ 403 (525)
-|.|=.|+.+.+.+.+-++.+.+. ++|+++++-..|. ...+ .+.+..++.. +.+.||++...+....++.
T Consensus 7 TPf~~dg~iD~~~~~~~i~~l~~~-Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~---~~~~~vi~gv~~~~~~~~i 82 (281)
T cd00408 7 TPFTADGEVDLDALRRLVEFLIEA-GVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAV---AGRVPVIAGVGANSTREAI 82 (281)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHHc-CCCEEEECCCCcccccCCHHHHHHHHHHHHHHh---CCCCeEEEecCCccHHHHH
Confidence 355666888888999999998875 8999998654442 1222 2333333322 2368888776664444443
Q ss_pred H---HHhhCCC-------CccccCCHHHHHHHHHHhhcccCCCCeEE-EeCCCCHHHHHHHHHHCCCCeEEEcChhHHHH
Q psy7785 404 R---ILDESKL-------PLIFASDLDEAASLVNACKSFKLSIPLVV-RLEGTNVQEGKRILDESKLPLIFASDLDEAAS 472 (525)
Q Consensus 404 ~---~L~~~Gv-------pvf~~~s~~~Av~Al~~l~~~~~~~P~~~-~l~g~~e~eak~LL~ayGIpv~lA~s~deAv~ 472 (525)
+ ...+.|+ |.|...+.++.++.+.+..+. ...|+.. ..+..+ |+++ +.+...+
T Consensus 83 ~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~-~~~pi~iYn~P~~t-----------g~~l----~~~~~~~ 146 (281)
T cd00408 83 ELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADA-SDLPVILYNIPGRT-----------GVDL----SPETIAR 146 (281)
T ss_pred HHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhc-CCCCEEEEECcccc-----------CCCC----CHHHHHH
Confidence 3 4455666 444334556655555555432 2345443 122111 1111 2333333
Q ss_pred HHHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHHHH
Q psy7785 473 LVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 519 (525)
Q Consensus 473 ~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (525)
.+ +. .-=+-+|-.+.+...-.+++...+..+.++.--|+.+
T Consensus 147 ---L~-~~--~~v~giK~s~~d~~~~~~~~~~~~~~~~v~~G~d~~~ 187 (281)
T cd00408 147 ---LA-EH--PNIVGIKDSSGDLDRLTRLIALLGPDFAVLSGDDDLL 187 (281)
T ss_pred ---Hh-cC--CCEEEEEeCCCCHHHHHHHHHhcCCCeEEEEcchHHH
Confidence 12 11 2236677777777777777665322344444434433
No 201
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=62.80 E-value=27 Score=33.82 Aligned_cols=57 Identities=25% Similarity=0.284 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHHhcCCCccEEEEEecccccC---hHHHHHHHHHHHHhcCCCCcEEEEeCCc
Q psy7785 338 VNEESIIQAFRIISSDSNVKCILVNVFGGIVN---CATIAKGLVNACKSFKLSIPLVVRLEGT 397 (525)
Q Consensus 338 a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~---~~~ia~~i~~a~~~~~~~kPivv~~~g~ 397 (525)
.+.+.+.++++.+.+||++.+|++.++....+ ..++.+.| +..+. .+|||++...|.
T Consensus 21 ~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l-~~~~~--~~kpVia~v~g~ 80 (211)
T cd07019 21 VGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAEL-AAARA--AGKPVVVSAGGA 80 (211)
T ss_pred cCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHH-HHHHh--CCCCEEEEECCe
Confidence 34567999999999999999999865432222 23333332 23344 689999877664
No 202
>PF11379 DUF3182: Protein of unknown function (DUF3182); InterPro: IPR021519 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=62.34 E-value=20 Score=37.37 Aligned_cols=81 Identities=12% Similarity=0.154 Sum_probs=56.7
Q ss_pred CCCccccCCHHHHHHHHHhc--CCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccCCCC
Q psy7785 24 STDKVCLEDARTATNILKDL--NFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQTPKT 101 (525)
Q Consensus 24 vp~~~~~~~~eea~~~a~~l--g~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~~~~ 101 (525)
|.++..+.|.++|..++..| + .||=+|+-...+|||. .+..+.+++.++...|-...+.
T Consensus 114 vL~G~tvFs~~DA~~A~~~LL~~-G~VRlKp~~a~gG~GQ-----------~vv~~~~~Ld~~L~~~~~~~l~------- 174 (355)
T PF11379_consen 114 VLPGYTVFSREDARRAARRLLRD-GPVRLKPVHATGGRGQ-----------QVVADADELDAALAALDDAELA------- 174 (355)
T ss_pred ccCCccccCHHHHHHHHHHHhcc-CCeeeccCcccCCCCc-----------eEecCHHHHHHHHHcCCHHHHH-------
Confidence 34555678899999999887 4 3999998766677655 3456788888888887655441
Q ss_pred CcccCeEEEEeeeCCceeEEEEEEE
Q psy7785 102 GINVNKVMVAKSVNITRETYFCIVQ 126 (525)
Q Consensus 102 g~~~~~vlVee~~~~~~E~~vgv~~ 126 (525)
-.|+.+|+-+..-.=++||-.+
T Consensus 175 ---~~GlVLE~~L~~~~T~SVGqv~ 196 (355)
T PF11379_consen 175 ---RHGLVLEEDLEEVVTYSVGQVR 196 (355)
T ss_pred ---hCCEEEecccCCCceeeEEEEE
Confidence 2577888887655555555443
No 203
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=62.23 E-value=70 Score=32.35 Aligned_cols=77 Identities=23% Similarity=0.344 Sum_probs=51.9
Q ss_pred cchhHHHHHHHH--HHHcCC---------CCCCeeeecC--CCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHH
Q psy7785 309 NGAGLAMATMDI--IKLHGG---------EPANFLDVGG--GVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAK 375 (525)
Q Consensus 309 nsGG~gvlaaD~--~~~~Gl---------~~aNPlDl~g--~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~ 375 (525)
+|||+|+. +|. +..+|. ...|+.-+.+ ..+++-+.+-++.+++|-.++++=+...+ ..++.+
T Consensus 14 ~sGGAGIq-ADLKTf~a~gvyg~saITaltaQNt~gV~~v~~v~~~~v~~Ql~av~~D~~v~avKtGML~----~~eiie 88 (263)
T COG0351 14 SSGGAGIQ-ADLKTFQALGVYGMSAITALTAQNTLGVHGVHPVPPEFVEAQLDAVFSDIPVDAVKTGMLG----SAEIIE 88 (263)
T ss_pred CCccHHHH-HHHHHHHhcCCccceEEEEEEEeecCceeeEEeCCHHHHHHHHHHHhhcCCCCEEEECCcC----CHHHHH
Confidence 56777775 463 445554 3578876554 45567789999999999999988763322 356777
Q ss_pred HHHHHHHhcCCCCcEE
Q psy7785 376 GLVNACKSFKLSIPLV 391 (525)
Q Consensus 376 ~i~~a~~~~~~~kPiv 391 (525)
.+.+..++++. .|+|
T Consensus 89 ~va~~l~~~~~-~~vV 103 (263)
T COG0351 89 VVAEKLKKYGI-GPVV 103 (263)
T ss_pred HHHHHHHhcCC-CcEE
Confidence 88888877432 5554
No 204
>PRK02186 argininosuccinate lyase; Provisional
Probab=61.62 E-value=9.5 Score=45.23 Aligned_cols=42 Identities=19% Similarity=0.151 Sum_probs=32.6
Q ss_pred HHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785 448 QEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN 494 (525)
Q Consensus 448 ~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~ 494 (525)
..-+++|+++|||+ ..+.+.+++.+ .+++ .|||||+|=....
T Consensus 109 ~~~r~~L~~~GIp~P~~~~v~~~~e~~~---~~~~--~~~PvVVKP~~g~ 153 (887)
T PRK02186 109 KRLARTLRDHGIDVPRTHALALRAVALD---ALDG--LTYPVVVKPRMGS 153 (887)
T ss_pred HHHHHHHHHcCCCCCCEEEeCCHHHHHH---HHHh--CCCCEEEEeCCCC
Confidence 35788999999999 67788888776 3456 3999999985543
No 205
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=61.12 E-value=85 Score=31.74 Aligned_cols=80 Identities=16% Similarity=0.260 Sum_probs=46.3
Q ss_pred CCcccc-CCHHHHHHHHHHhhcccCCCCeEEEeCCC-CHHHHHHHHHHCCCCe--EEEcChhHHHHHHHHhhhcCCCCcE
Q psy7785 411 LPLIFA-SDLDEAASLVNACKSFKLSIPLVVRLEGT-NVQEGKRILDESKLPL--IFASDLDEAASLVNACKSFKLSIPL 486 (525)
Q Consensus 411 vpvf~~-~s~~~Av~Al~~l~~~~~~~P~~~~l~g~-~e~eak~LL~ayGIpv--~lA~s~deAv~~~~aa~~~~~G~PV 486 (525)
+|..+. .++++|++...++.+.. -.-..+++|. .-.+.-+.|...|||| ++==++.-+.. + .||
T Consensus 84 mPf~sy~~s~e~av~nA~rl~ke~--GadaVKlEGg~~~~~~i~~l~~~GIPV~gHiGLtPQ~~~~-------~-GGy-- 151 (261)
T PF02548_consen 84 MPFGSYQASPEQAVRNAGRLMKEA--GADAVKLEGGAEIAETIKALVDAGIPVMGHIGLTPQSVHQ-------L-GGY-- 151 (261)
T ss_dssp --TTSSTSSHHHHHHHHHHHHHTT--T-SEEEEEBSGGGHHHHHHHHHTT--EEEEEES-GGGHHH-------H-TSS--
T ss_pred CCcccccCCHHHHHHHHHHHHHhc--CCCEEEeccchhHHHHHHHHHHCCCcEEEEecCchhheec-------c-CCc--
Confidence 444443 68888888888876411 0113456653 2345677777889999 66666665543 1 255
Q ss_pred EEEEecCChHHHHHhhhh
Q psy7785 487 VVRLEGTNVQEGKRILDE 504 (525)
Q Consensus 487 VlKi~~~~~~~~~~~~~~ 504 (525)
|++|..+++|++||.+
T Consensus 152 --r~qGk~~~~a~~l~~~ 167 (261)
T PF02548_consen 152 --RVQGKTAEEAEKLLED 167 (261)
T ss_dssp ----CSTSHHHHHHHHHH
T ss_pred --eEEecCHHHHHHHHHH
Confidence 6678888888888874
No 206
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=60.84 E-value=23 Score=40.07 Aligned_cols=78 Identities=21% Similarity=0.411 Sum_probs=49.9
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEe--cccc-cChHHHHHHH
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNV--FGGI-VNCATIAKGL 377 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~--~~~~-~~~~~ia~~i 377 (525)
.++|++|+..|-..- |. ++ .+....+.+.+.++...+||+|++|++-+ ++|. ..++.+.+.|
T Consensus 307 ~~~vavI~~~G~I~~---------~~---~~---~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~~i 371 (584)
T TIGR00705 307 QDKIGIVHLEGPIAD---------GR---DT---EGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRREL 371 (584)
T ss_pred CCeEEEEEEEEEEcC---------CC---Cc---ccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHHHH
Confidence 468999998874310 11 11 12334567889999999999999999854 5553 3345555554
Q ss_pred HHHHHhcCCCCcEEEEeCC
Q psy7785 378 VNACKSFKLSIPLVVRLEG 396 (525)
Q Consensus 378 ~~a~~~~~~~kPivv~~~g 396 (525)
.+. +. .+|||++...|
T Consensus 372 ~~~-~~--~gKPVva~~~g 387 (584)
T TIGR00705 372 ARA-QA--RGKPVIVSMGA 387 (584)
T ss_pred HHH-Hh--CCCcEEEEECC
Confidence 443 33 46999987655
No 207
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=59.87 E-value=15 Score=29.34 Aligned_cols=38 Identities=29% Similarity=0.471 Sum_probs=28.3
Q ss_pred EcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhhh
Q psy7785 464 ASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDE 504 (525)
Q Consensus 464 A~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~ 504 (525)
-++.+|+.+.++..++ |.+|++.+..-+.++++|++..
T Consensus 6 p~~~~D~~~i~~~l~~---g~~Vivnl~~l~~~~~~Ri~Df 43 (73)
T PF04472_consen 6 PKSFEDAREIVDALRE---GKIVIVNLENLDDEEAQRILDF 43 (73)
T ss_dssp -SSGGGHHHHHHHHHT---T--EEEE-TTS-HHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHc---CCEEEEECCCCCHHHHHHHHHH
Confidence 3567888887777766 9999999999999999999985
No 208
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=59.50 E-value=1.3e+02 Score=26.91 Aligned_cols=104 Identities=14% Similarity=0.034 Sum_probs=61.6
Q ss_pred HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeC
Q psy7785 316 ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLE 395 (525)
Q Consensus 316 laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~ 395 (525)
+.+..+...|+++ +|++...+++.+.++.. + .+.|.+.+.... .........+++.+++...+. +.+..+
T Consensus 21 iv~~~l~~~GfeV---i~lg~~~s~e~~v~aa~---e-~~adii~iSsl~--~~~~~~~~~~~~~L~~~g~~~-i~vivG 90 (132)
T TIGR00640 21 VIATAYADLGFDV---DVGPLFQTPEEIARQAV---E-ADVHVVGVSSLA--GGHLTLVPALRKELDKLGRPD-ILVVVG 90 (132)
T ss_pred HHHHHHHhCCcEE---EECCCCCCHHHHHHHHH---H-cCCCEEEEcCch--hhhHHHHHHHHHHHHhcCCCC-CEEEEe
Confidence 4556777777764 67888888886544442 2 367766654332 234455677777776633322 223335
Q ss_pred CcchHHHHHHHhhCCCCccc-c-CCHHHHHHHHHHh
Q psy7785 396 GTNVQEGKRILDESKLPLIF-A-SDLDEAASLVNAC 429 (525)
Q Consensus 396 g~~~~~~~~~L~~~Gvpvf~-~-~s~~~Av~Al~~l 429 (525)
|..+.+..+.|.+.|+--|. + .++.+.+..+...
T Consensus 91 G~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~ 126 (132)
T TIGR00640 91 GVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKK 126 (132)
T ss_pred CCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHH
Confidence 54344556779999996443 3 4566666666553
No 209
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=58.51 E-value=28 Score=33.98 Aligned_cols=57 Identities=14% Similarity=0.350 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHhcCCCccEEEEEec--cc-ccChHHHHHHHHHHHHhcCCCCcEEEEeCC
Q psy7785 337 GVNEESIIQAFRIISSDSNVKCILVNVF--GG-IVNCATIAKGLVNACKSFKLSIPLVVRLEG 396 (525)
Q Consensus 337 ~a~~~~~~~al~~ll~dp~vd~vlv~~~--~~-~~~~~~ia~~i~~a~~~~~~~kPivv~~~g 396 (525)
..+.+.+.++++.+.+||++++|++.+- ++ .....++.+.|... ++ .+|||++...+
T Consensus 28 ~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~-~~--~~kpVia~~~~ 87 (222)
T cd07018 28 ELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERF-RA--SGKPVIAYADG 87 (222)
T ss_pred CccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHH-HH--hCCeEEEEeCC
Confidence 3445668999999999999999998643 22 23345555544443 32 57999876543
No 210
>KOG0369|consensus
Probab=58.43 E-value=36 Score=38.66 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=25.5
Q ss_pred HHHHHHHCCCCe-----EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHH
Q psy7785 450 GKRILDESKLPL-----IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKR 500 (525)
Q Consensus 450 ak~LL~ayGIpv-----~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~ 500 (525)
|+.+-.++|+|+ .-.++.+||.+. +++ -|+||.+|..=.+---|.+
T Consensus 151 AR~~Ai~agVpvVPGTpgPitt~~EA~eF---~k~--yG~PvI~KAAyGGGGRGmR 201 (1176)
T KOG0369|consen 151 ARAIAIEAGVPVVPGTPGPITTVEEALEF---VKE--YGLPVIIKAAYGGGGRGMR 201 (1176)
T ss_pred HHHHHHHcCCCccCCCCCCcccHHHHHHH---HHh--cCCcEEEeecccCCCcceE
Confidence 444555556666 445666777663 334 2777777765444333333
No 211
>PF07478 Dala_Dala_lig_C: D-ala D-ala ligase C-terminus; InterPro: IPR011095 This entry represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme 6.3.2.4 from EC. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine: D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF) [].; GO: 0008716 D-alanine-D-alanine ligase activity; PDB: 3Q1K_D 3I12_C 1IOV_A 1IOW_A 2DLN_A 4EG0_B 3LWB_A 1EHI_B 2FB9_A 3V4Z_A ....
Probab=57.17 E-value=7.7 Score=37.49 Aligned_cols=61 Identities=15% Similarity=0.307 Sum_probs=36.0
Q ss_pred HHHHCCCCe---EEEcChhHHHH-HHHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHHHHHHh
Q psy7785 453 ILDESKLPL---IFASDLDEAAS-LVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAANWF 522 (525)
Q Consensus 453 LL~ayGIpv---~lA~s~deAv~-~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (525)
||+++|||+ .+....+.... ..+....+ |||+++|=...+-+-|..+. ++ .+++.+|++.+
T Consensus 1 l~~~~gI~tp~~~~~~~~~~~~~~~~~~~~~l--~~P~~VKP~~~GsS~Gi~~v--~~-----~~el~~ai~~~ 65 (203)
T PF07478_consen 1 LLKSAGIPTPPYVVVKKNEDDSDSIEKILEDL--GFPLFVKPASEGSSIGISKV--HN-----EEELEEAIEKA 65 (203)
T ss_dssp HHHHTT-BB-SEEEEETTSHHHHHHHHHHHHH--SSSEEEEESSTSTTTTEEEE--SS-----HHHHHHHHHHH
T ss_pred ChhhcCCCCCCEEEEecccccchhHHHHHhhc--CCCEEEEECCCCccEEEEEc--CC-----HHHHHHHHHHH
Confidence 688999999 44443333211 11234454 99999998888777775322 21 45666666654
No 212
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=55.85 E-value=55 Score=31.71 Aligned_cols=62 Identities=21% Similarity=0.255 Sum_probs=38.3
Q ss_pred cCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCc
Q psy7785 335 GGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGT 397 (525)
Q Consensus 335 ~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~ 397 (525)
.+....+.+.++++.+.+||++.+|++.+.+..... .-.+.+.++......+|||++...|.
T Consensus 22 ~~~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~-~~~~~l~~~l~~~~~~KpViA~v~g~ 83 (214)
T cd07022 22 SGLTSYEGIAAAIRAALADPDVRAIVLDIDSPGGEV-AGVFELADAIRAARAGKPIVAFVNGL 83 (214)
T ss_pred CCcccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcH-HHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 334456779999999999999999998543221111 11233444444321259999877664
No 213
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=55.42 E-value=1.8e+02 Score=27.04 Aligned_cols=122 Identities=18% Similarity=0.156 Sum_probs=70.8
Q ss_pred CcEEEEecc------hhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEe--c-ccccC---
Q psy7785 302 GNIGCLVNG------AGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNV--F-GGIVN--- 369 (525)
Q Consensus 302 ~rIaIitns------GG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~--~-~~~~~--- 369 (525)
-||+||... ..+---+.+.+...|.+..|.--++ -+-.-.+.-+++.+++..++|+++..- . +....
T Consensus 13 ~riaIV~s~~n~~i~~~l~~ga~~~l~~~gv~~~~i~v~~-VPGa~EiP~a~~~l~~~~~~DavIalG~VIrG~T~H~e~ 91 (154)
T PRK00061 13 LRIGIVVARFNDFITDALLEGALDALKRHGVSEENIDVVR-VPGAFEIPLAAKKLAESGKYDAVIALGAVIRGETPHFDY 91 (154)
T ss_pred CEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEE-CCCHHHHHHHHHHHHHcCCCCEEEEEeeEEcCCCchHHH
Confidence 378887643 2344446678888887666554333 333344666777888888899999742 2 33332
Q ss_pred -hHHHHHHHHHHHHhcCCCCcEEEEeCCc-chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhc
Q psy7785 370 -CATIAKGLVNACKSFKLSIPLVVRLEGT-NVQEGKRILDESKLPLIFASDLDEAASLVNACKS 431 (525)
Q Consensus 370 -~~~ia~~i~~a~~~~~~~kPivv~~~g~-~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~ 431 (525)
+..+.++|.+..-+ +++||....... +.+++..+ .|.-.. +--.+|+.++.++.+
T Consensus 92 V~~~v~~gl~~v~l~--~~~PV~~GVLt~~~~eQa~~R---~~~~~~--nkG~eaa~aal~m~~ 148 (154)
T PRK00061 92 VANEVAKGLADVSLE--TGVPVGFGVLTTDTIEQAIER---AGTKAG--NKGAEAALAALEMAN 148 (154)
T ss_pred HHHHHHHHHHHHHhc--cCCCEEEEecCCCCHHHHHHH---hCcccc--ccHHHHHHHHHHHHH
Confidence 34555666666544 789998754443 44444432 332222 334566666665543
No 214
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=54.60 E-value=1.9e+02 Score=27.30 Aligned_cols=120 Identities=14% Similarity=0.106 Sum_probs=61.1
Q ss_pred CcEEEEecchhHHHH--HHHHHHHcCCC-------------CCCe-eeecCCCCHHHHHHHHHHHhcCCCccEEEEEecc
Q psy7785 302 GNIGCLVNGAGLAMA--TMDIIKLHGGE-------------PANF-LDVGGGVNEESIIQAFRIISSDSNVKCILVNVFG 365 (525)
Q Consensus 302 ~rIaIitnsGG~gvl--aaD~~~~~Gl~-------------~aNP-lDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~ 365 (525)
.++.+++-||-.|+| +++.+.+.|+. ..|| +|..= ....+.+=-+.+.+. -|+++ ..++
T Consensus 31 ~g~~lV~GGg~~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~i--~~~~~~~Rk~~m~~~--sda~I-~lPG 105 (178)
T TIGR00730 31 QGWGLVYGGGRVGLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTELI--EVNGMHERKAMMAEL--ADAFI-AMPG 105 (178)
T ss_pred CCCEEEECCChHhHHHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCceE--EECCHHHHHHHHHHh--CCEEE-EcCC
Confidence 357777766646665 56877777762 1232 22110 001122222233322 35444 4567
Q ss_pred cccChHHHHHHHHHHHHhcCCCCcEEEEeC-Cc--chHHHHHHHhhCCC-------CccccCCHHHHHHHHH
Q psy7785 366 GIVNCATIAKGLVNACKSFKLSIPLVVRLE-GT--NVQEGKRILDESKL-------PLIFASDLDEAASLVN 427 (525)
Q Consensus 366 ~~~~~~~ia~~i~~a~~~~~~~kPivv~~~-g~--~~~~~~~~L~~~Gv-------pvf~~~s~~~Av~Al~ 427 (525)
|.-..+++.+.+.-..-. .++||+++... |- .-.+-.+.+.+.|. .++.++++++++..+.
T Consensus 106 G~GTL~El~e~~~~~qlg-~~~kPiil~n~~g~~~~l~~~l~~~~~~gfi~~~~~~~~~~~d~~~e~~~~i~ 176 (178)
T TIGR00730 106 GFGTLEELFEVLTWAQLG-IHQKPIILFNVNGHFDGLVEWLKYSIQEGFISESHLKLIHVVSRPDELIEQVQ 176 (178)
T ss_pred CcchHHHHHHHHHHHHcC-CCCCCEEEECCcchHHHHHHHHHHHHHCCCCCHHHcCcEEEcCCHHHHHHHHH
Confidence 766677888776544332 26799987532 21 11222334445553 1223688888887764
No 215
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=54.49 E-value=1.7e+02 Score=26.61 Aligned_cols=108 Identities=15% Similarity=0.140 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEe--c-ccccC----hHHHHHHHHHHHHhcCCC
Q psy7785 315 MATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNV--F-GGIVN----CATIAKGLVNACKSFKLS 387 (525)
Q Consensus 315 vlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~--~-~~~~~----~~~ia~~i~~a~~~~~~~ 387 (525)
--+.+.+.++|....|---++ -+-.-.+.-+.+.+++..++|+++..- . +.... +..++++|.+..-+ ++
T Consensus 20 ~ga~~~l~~~g~~~~~i~v~~-VPGa~EiP~a~~~l~~~~~~DavI~LG~VIrG~T~H~e~v~~~v~~gl~~~sl~--~~ 96 (138)
T TIGR00114 20 KGAIDALKRLGAEVDNIDVIW-VPGAFELPLAVKKLAETGKYDAVIALGCVIRGGTPHFEYVADEAAKGIADLALD--YD 96 (138)
T ss_pred HHHHHHHHHcCCCccceEEEE-CCcHHHHHHHHHHHHhcCCCCEEEEEeeEEeCCCchhHHHHHHHHHHHHHHHhh--hC
Confidence 346678888887766543332 122233556677778878899999742 2 33332 34556677666555 78
Q ss_pred CcEEEEeCCc-chHHHHHHHhhCCCCccccCCHHHHHHHHHHhh
Q psy7785 388 IPLVVRLEGT-NVQEGKRILDESKLPLIFASDLDEAASLVNACK 430 (525)
Q Consensus 388 kPivv~~~g~-~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~ 430 (525)
+||.....+. +.+++. .+.|.-.- .--.+|+.++.++.
T Consensus 97 ~PV~~GvLt~~~~eQa~---~R~~~~~~--nkG~eaA~aal~m~ 135 (138)
T TIGR00114 97 KPVIFGILTTGTIEQAI---ERAGDKAG--NKGVEAAVAALEMA 135 (138)
T ss_pred CCEEEEecCCCCHHHHH---HHcccccc--ccHHHHHHHHHHHH
Confidence 9998765554 333332 33332111 33455555555543
No 216
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=54.45 E-value=57 Score=33.97 Aligned_cols=47 Identities=6% Similarity=0.149 Sum_probs=30.1
Q ss_pred HHHHHHhcCCCCcEEEEeCCcchHHHHHHHhhCCCCccc-cCCHHHHHHHHH
Q psy7785 377 LVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIF-ASDLDEAASLVN 427 (525)
Q Consensus 377 i~~a~~~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~-~~s~~~Av~Al~ 427 (525)
.++++.+ .+.|+++...|. +.. .+.|++.|+.++. +.++..|.++..
T Consensus 74 ~l~vi~e--~~v~~V~~~~G~-P~~-~~~lk~~Gi~v~~~v~s~~~A~~a~~ 121 (320)
T cd04743 74 QLAVVRA--IKPTFALIAGGR-PDQ-ARALEAIGISTYLHVPSPGLLKQFLE 121 (320)
T ss_pred HHHHHHh--cCCcEEEEcCCC-hHH-HHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3444444 345555544443 334 5889999999986 788888866553
No 217
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=53.93 E-value=11 Score=43.38 Aligned_cols=51 Identities=12% Similarity=0.281 Sum_probs=39.4
Q ss_pred HHHHHHHHCCCCe-----EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhhh
Q psy7785 449 EGKRILDESKLPL-----IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDE 504 (525)
Q Consensus 449 eak~LL~ayGIpv-----~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~ 504 (525)
.|+.+-...|+|| -...+.||+.+. +++ .||||.+|..-.+--.|-|+.++
T Consensus 124 ~Ar~~A~~agvPvipgt~~~~~~~ee~~~f---a~~--~gyPvmiKA~~GGGGRGMR~vr~ 179 (1149)
T COG1038 124 KARNAAIKAGVPVIPGTDGPIETIEEALEF---AEE--YGYPVMIKAAAGGGGRGMRVVRS 179 (1149)
T ss_pred HHHHHHHHcCCCccCCCCCCcccHHHHHHH---HHh--cCCcEEEEEccCCCccceeeecC
Confidence 5777777889999 567788999984 556 39999999987776666666664
No 218
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=52.13 E-value=57 Score=31.35 Aligned_cols=58 Identities=22% Similarity=0.453 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHhcCCCccEEEEEec--ccc-cChHHHHHHHHHHHHhcCCCCcEEEEeCCc
Q psy7785 337 GVNEESIIQAFRIISSDSNVKCILVNVF--GGI-VNCATIAKGLVNACKSFKLSIPLVVRLEGT 397 (525)
Q Consensus 337 ~a~~~~~~~al~~ll~dp~vd~vlv~~~--~~~-~~~~~ia~~i~~a~~~~~~~kPivv~~~g~ 397 (525)
......+.++++.+.+||++.+|++.+. ++. .....+.+.+. ..+. .+||+++...|.
T Consensus 16 ~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~-~~~~--~~kpvia~v~g~ 76 (208)
T cd07023 16 GIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIR-RLRK--AKKPVVASMGDV 76 (208)
T ss_pred CCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHH-HHHh--cCCcEEEEECCc
Confidence 3456678999999999999999998543 331 22233333322 2233 579998877664
No 219
>KOG1251|consensus
Probab=51.90 E-value=89 Score=31.46 Aligned_cols=99 Identities=20% Similarity=0.281 Sum_probs=58.8
Q ss_pred HHHHHHHHcCC---CCCCeeee-cCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEE
Q psy7785 316 ATMDIIKLHGG---EPANFLDV-GGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLV 391 (525)
Q Consensus 316 laaD~~~~~Gl---~~aNPlDl-~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPiv 391 (525)
++.|..++.|. .|.|-.++ .|+.+. ++++|.+=+.+|++||...+|.. ..+++-+++..+++..|.
T Consensus 135 va~~ltee~g~~~i~Py~~p~vIaGqgTi-----A~ElleqVg~iDalfvpvgGGGl-----lSgvAlaa~~l~P~i~vy 204 (323)
T KOG1251|consen 135 VAKDLTEETGYYLIHPYNHPSVIAGQGTI-----ALELLEQVGEIDALFVPVGGGGL-----LSGVALAAKSLKPSIEVY 204 (323)
T ss_pred HHHHHHHhcCcEEeCCCCCcceeeccchH-----HHHHHHhhCccceEEEeecCcch-----hhHHHHHHhccCCCcEEE
Confidence 46788888887 45555454 566653 77778888899999997766532 234444555544444454
Q ss_pred EEeCCcchHHHHHHHhhCCCCcc-ccCCHHHHHHH
Q psy7785 392 VRLEGTNVQEGKRILDESKLPLI-FASDLDEAASL 425 (525)
Q Consensus 392 v~~~g~~~~~~~~~L~~~Gvpvf-~~~s~~~Av~A 425 (525)
..-. ....++.+-+.+.+|-.. .+.++.+.++.
T Consensus 205 ~veP-~~a~d~~qsf~~g~I~~l~tp~TIADG~r~ 238 (323)
T KOG1251|consen 205 AVEP-EAADDGQQSFLKGKIVHLDTPKTIADGVRT 238 (323)
T ss_pred EecC-cccchHHHHHhcCCeEecCCchhhhhhhhh
Confidence 3322 223455666677776555 13445554443
No 220
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=51.15 E-value=2.9e+02 Score=29.92 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCc---------------chHHHH
Q psy7785 339 NEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGT---------------NVQEGK 403 (525)
Q Consensus 339 ~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~---------------~~~~~~ 403 (525)
+.+...++.+.+.++ ++|++++..... ... ..++..++. .++|++.+-... ...+..
T Consensus 48 ~~~~~~~~~~~~~~~-~~d~ii~~~~tf-~~~----~~~~~~~~~--~~~Pvll~a~~~~~~~~~~~~~~~s~~g~~~~~ 119 (452)
T cd00578 48 TPDEARKAAEEFNEA-NCDGLIVWMHTF-GPA----KMWIAGLSE--LRKPVLLLATQFNREIPDFMNLNQSACGLREFG 119 (452)
T ss_pred CHHHHHHHHHHHhhc-CCcEEEEccccc-ccH----HHHHHHHHh--cCCCEEEEeCCCCCCCCchhhhhcchhhhHHHH
Confidence 566788888888887 899998754322 111 233344454 579998753221 223445
Q ss_pred HHHhhCCCCccc
Q psy7785 404 RILDESKLPLIF 415 (525)
Q Consensus 404 ~~L~~~Gvpvf~ 415 (525)
..|++.|+|...
T Consensus 120 ~~l~r~gi~~~~ 131 (452)
T cd00578 120 NILARLGIPFKV 131 (452)
T ss_pred HHHHHcCCceeE
Confidence 688899999653
No 221
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=50.77 E-value=1.2e+02 Score=30.83 Aligned_cols=121 Identities=13% Similarity=0.131 Sum_probs=68.5
Q ss_pred cEEEEecchhHHHHHHHHHHHcCCCCC-----------CeeeecCC-CC---HHHHHHHHHHHhcCCCccEEEEEecccc
Q psy7785 303 NIGCLVNGAGLAMATMDIIKLHGGEPA-----------NFLDVGGG-VN---EESIIQAFRIISSDSNVKCILVNVFGGI 367 (525)
Q Consensus 303 rIaIitnsGG~gvlaaD~~~~~Gl~~a-----------NPlDl~g~-a~---~~~~~~al~~ll~dp~vd~vlv~~~~~~ 367 (525)
+|.|....|=.|-.++.++...|++.. |..++.|. .. +......++.+++. ..|.|+|- |+.
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~-~~d~VvID-FT~- 78 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAK-YPELICID-YTH- 78 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHhh-cCCEEEEE-CCC-
Confidence 578888888899999999888777532 22223221 00 01113444445533 25545553 321
Q ss_pred cChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhc
Q psy7785 368 VNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKS 431 (525)
Q Consensus 368 ~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~ 431 (525)
.......++.+.+ .++|+|+...|-...+-.++-...++|++.++++.-.+..+.++.+
T Consensus 79 ---P~~~~~n~~~~~~--~gv~~ViGTTG~~~~~~~~l~~~~~i~~l~apNfSiGv~ll~~~~~ 137 (275)
T TIGR02130 79 ---PSAVNDNAAFYGK--HGIPFVMGTTGGDREALAKLVADAKHPAVIAPNMAKQIVAFLAAIE 137 (275)
T ss_pred ---hHHHHHHHHHHHH--CCCCEEEcCCCCCHHHHHHHHHhcCCCEEEECcccHHHHHHHHHHH
Confidence 2223334555555 6899998777754333333334468998876777766766666543
No 222
>PLN02417 dihydrodipicolinate synthase
Probab=50.16 E-value=2e+02 Score=29.15 Aligned_cols=102 Identities=8% Similarity=-0.005 Sum_probs=59.9
Q ss_pred CCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHH
Q psy7785 329 ANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRI 405 (525)
Q Consensus 329 aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~~ 405 (525)
--|.|=-|+.+.+.+.+.++.+.+ .++++++++-..|. ...++-.+.+..+.+....+.||++.....+..++.+.
T Consensus 10 ~TPf~~~g~iD~~~~~~~i~~l~~-~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~ 88 (280)
T PLN02417 10 KTPYLPDGRFDLEAYDSLVNMQIE-NGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHA 88 (280)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHH-cCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHH
Confidence 356666788899999999999887 58999998644442 22222222222222222235788877666555555443
Q ss_pred ---HhhCCC-------CccccCCHHHHHHHHHHhhc
Q psy7785 406 ---LDESKL-------PLIFASDLDEAASLVNACKS 431 (525)
Q Consensus 406 ---L~~~Gv-------pvf~~~s~~~Av~Al~~l~~ 431 (525)
-.+.|. |.|...+.++.++.+..+.+
T Consensus 89 a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~ 124 (280)
T PLN02417 89 TEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLD 124 (280)
T ss_pred HHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHh
Confidence 345665 54534455555555555543
No 223
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=49.99 E-value=63 Score=32.79 Aligned_cols=63 Identities=14% Similarity=0.124 Sum_probs=37.5
Q ss_pred HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS 479 (525)
Q Consensus 403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~ 479 (525)
...++..|+|+. .+...++.... +-...+++|+. |||+ ....+.+ .+..
T Consensus 72 ~~~le~~gip~~--G~~~~a~~i~~------------------DK~~~k~~l~~-~ip~p~~~~~~~~~-------~~~~ 123 (299)
T PRK14571 72 QAILDFLGIRYT--GSDAFSSMICF------------------DKLLTYRFLKG-TVEIPDFVEIKEFM-------KTSP 123 (299)
T ss_pred HHHHHHcCCCcc--CCCHHHHHHHc------------------CHHHHHHHHhc-CCCCCCEEEEechh-------hhhh
Confidence 457778899988 54333332221 12356788884 7998 3343321 1234
Q ss_pred cCCCCcEEEEEecCCh
Q psy7785 480 FKLSIPLVVRLEGTNV 495 (525)
Q Consensus 480 ~~~G~PVVlKi~~~~~ 495 (525)
.|||+|+|=....-
T Consensus 124 --l~~P~vvKP~~g~~ 137 (299)
T PRK14571 124 --LGYPCVVKPRREGS 137 (299)
T ss_pred --cCCCEEEecCCCCC
Confidence 39999999876543
No 224
>PRK06455 riboflavin synthase; Provisional
Probab=49.86 E-value=1.4e+02 Score=27.84 Aligned_cols=79 Identities=10% Similarity=0.030 Sum_probs=51.2
Q ss_pred HHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc-c----cChHHHHHHHHHHHHhcCCCC
Q psy7785 314 AMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG-I----VNCATIAKGLVNACKSFKLSI 388 (525)
Q Consensus 314 gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~-~----~~~~~ia~~i~~a~~~~~~~k 388 (525)
.--+.|.+.++| .-.| +++.--+-.-.+.-+.+.++++.++|+++..-..+ . ..|..++.+|.++.-+ +++
T Consensus 17 ~~gAi~~L~~~g-~~~~-I~v~~VPGa~ELP~aakkL~~~~~yDaVIaLG~VG~t~h~d~Va~~vS~GL~~lsL~--t~~ 92 (155)
T PRK06455 17 GSAAIDELRKLD-PSAK-IIRYTVPGIKDLPVAAKKLIEEEGCDIVMALGMPGPTEKDKYCAHEASIGLIMAQLM--TNK 92 (155)
T ss_pred HHHHHHHHHhcC-CCCc-eEEEECCCHHHHHHHHHHHHhcCCCCEEEEecceeccCcchhHHHHHHHHHHHHHhh--hCC
Confidence 345778888877 3234 55543333444666778888888899999743223 2 2346677788887666 789
Q ss_pred cEEEEeCC
Q psy7785 389 PLVVRLEG 396 (525)
Q Consensus 389 Pivv~~~g 396 (525)
||.-.+.-
T Consensus 93 PVi~v~vh 100 (155)
T PRK06455 93 HIIEVFVH 100 (155)
T ss_pred CEEEEEec
Confidence 99865544
No 225
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=49.40 E-value=1.8e+02 Score=27.05 Aligned_cols=122 Identities=13% Similarity=0.186 Sum_probs=67.4
Q ss_pred CCCcEEEEeCCcchHHHHHHHhh-CCCCccc-cCCHHHHHHHHHHhhcccCCCCeEEEeCC--CCHHHHHHHHHHCCCCe
Q psy7785 386 LSIPLVVRLEGTNVQEGKRILDE-SKLPLIF-ASDLDEAASLVNACKSFKLSIPLVVRLEG--TNVQEGKRILDESKLPL 461 (525)
Q Consensus 386 ~~kPivv~~~g~~~~~~~~~L~~-~Gvpvf~-~~s~~~Av~Al~~l~~~~~~~P~~~~l~g--~~e~eak~LL~ayGIpv 461 (525)
.+.-++++.+|+ ...|++ .++||.. ..|..+-++++.....+.....++ ..+. .....-.++| |+++
T Consensus 33 ~g~dViIsRG~t-----a~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv-~~~~~~~~~~~~~~ll---~~~i 103 (176)
T PF06506_consen 33 EGADVIISRGGT-----AELLRKHVSIPVVEIPISGFDILRALAKAKKYGPKIAVV-GYPNIIPGLESIEELL---GVDI 103 (176)
T ss_dssp TT-SEEEEEHHH-----HHHHHCC-SS-EEEE---HHHHHHHHHHCCCCTSEEEEE-EESS-SCCHHHHHHHH---T-EE
T ss_pred cCCeEEEECCHH-----HHHHHHhCCCCEEEECCCHhHHHHHHHHHHhcCCcEEEE-ecccccHHHHHHHHHh---CCce
Confidence 345577777665 123333 3789885 456666666666544322111111 1111 1233455555 7887
Q ss_pred --EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHHHHHHhH
Q psy7785 462 --IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAANWFI 523 (525)
Q Consensus 462 --~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (525)
....+.+|....++.+.+ .|+-|++=- .. .-++-.+.|+++.++++-++++..|+
T Consensus 104 ~~~~~~~~~e~~~~i~~~~~--~G~~viVGg---~~--~~~~A~~~gl~~v~i~sg~esi~~Al 160 (176)
T PF06506_consen 104 KIYPYDSEEEIEAAIKQAKA--EGVDVIVGG---GV--VCRLARKLGLPGVLIESGEESIRRAL 160 (176)
T ss_dssp EEEEESSHHHHHHHHHHHHH--TT--EEEES---HH--HHHHHHHTTSEEEESS--HHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHH--cCCcEEECC---HH--HHHHHHHcCCcEEEEEecHHHHHHHH
Confidence 888999999888777766 488887643 32 34555668999989888788887775
No 226
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=48.18 E-value=1.7e+02 Score=28.40 Aligned_cols=81 Identities=19% Similarity=0.249 Sum_probs=46.7
Q ss_pred CcEEEEecchhHHHH------HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHh-cCCCccEEEEEecccccChHHHH
Q psy7785 302 GNIGCLVNGAGLAMA------TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIIS-SDSNVKCILVNVFGGIVNCATIA 374 (525)
Q Consensus 302 ~rIaIitnsGG~gvl------aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll-~dp~vd~vlv~~~~~~~~~~~ia 374 (525)
++|++++...+.... .-+.+.++|++.....-+.+..+.+...++++.++ .+|++|+++.. .+.++
T Consensus 117 ~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a 189 (268)
T cd06270 117 RKIACITGPLTKEDARLRLQGYRDALAEAGIALDESLIIEGDFTEEGGYAAMQELLARGAPFTAVFCA-------NDEMA 189 (268)
T ss_pred ceEEEEeCCcccccHHHHHHHHHHHHHHcCCCCCcceEEECCCCHHHHHHHHHHHHhCCCCCCEEEEc-------CcHHH
Confidence 478888754432211 23566777765433333455555555455555555 56789988853 24567
Q ss_pred HHHHHHHHhcCCCCc
Q psy7785 375 KGLVNACKSFKLSIP 389 (525)
Q Consensus 375 ~~i~~a~~~~~~~kP 389 (525)
.++++++++.+...|
T Consensus 190 ~g~~~~l~~~g~~ip 204 (268)
T cd06270 190 AGAISALREHGISVP 204 (268)
T ss_pred HHHHHHHHHcCCCCC
Confidence 788888877544444
No 227
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=47.89 E-value=83 Score=28.61 Aligned_cols=55 Identities=24% Similarity=0.448 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHhcCCCccEEEEEec--ccccChHHHHHHHHHHHHhcCCCCcEEEEeCCc
Q psy7785 338 VNEESIIQAFRIISSDSNVKCILVNVF--GGIVNCATIAKGLVNACKSFKLSIPLVVRLEGT 397 (525)
Q Consensus 338 a~~~~~~~al~~ll~dp~vd~vlv~~~--~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~ 397 (525)
.+.+.+.+.++.+.+|+++++|++.+. ++. . .-...|.++.+. .+||+++...|.
T Consensus 11 ~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~--~-~~~~~i~~~l~~--~~kpvva~~~g~ 67 (161)
T cd00394 11 VSADQLAAQIRFAEADNSVKAIVLEVNTPGGR--V-DAGMNIVDALQA--SRKPVIAYVGGQ 67 (161)
T ss_pred chHHHHHHHHHHHHhCCCCceEEEEEECCCcC--H-HHHHHHHHHHHH--hCCCEEEEECCh
Confidence 344568889999999999999988543 332 1 223456666666 569999877764
No 228
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=47.75 E-value=3.3e+02 Score=27.94 Aligned_cols=165 Identities=14% Similarity=0.150 Sum_probs=90.9
Q ss_pred eeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccccc---Ch---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHH
Q psy7785 331 FLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIV---NC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKR 404 (525)
Q Consensus 331 PlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~---~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~ 404 (525)
|.|--|..+.+.+.+.++-+.+.. +|+|+++-.+|.. .. .++.+..+++.. .+.||++..++++..++.+
T Consensus 15 PF~~dg~vD~~a~~~lv~~li~~G-v~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~---grvpviaG~g~~~t~eai~ 90 (299)
T COG0329 15 PFDEDGSVDEEALRRLVEFLIAAG-VDGLVVLGTTGESPTLTLEERKEVLEAVVEAVG---GRVPVIAGVGSNSTAEAIE 90 (299)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHcC-CCEEEECCCCccchhcCHHHHHHHHHHHHHHHC---CCCcEEEecCCCcHHHHHH
Confidence 333347788888999999988764 9999986554421 12 233444444433 3688888777665555543
Q ss_pred ---HHhhCCC-------CccccCCHHHHHHHHHHhhcccCCCCeEE-EeCCCCHHHHHHHHHHCCCCeEEEcChhHHHHH
Q psy7785 405 ---ILDESKL-------PLIFASDLDEAASLVNACKSFKLSIPLVV-RLEGTNVQEGKRILDESKLPLIFASDLDEAASL 473 (525)
Q Consensus 405 ---~L~~~Gv-------pvf~~~s~~~Av~Al~~l~~~~~~~P~~~-~l~g~~e~eak~LL~ayGIpv~lA~s~deAv~~ 473 (525)
.-++.|+ |+|.-.+.+.....+.+..+. ...|+.. ..|+.+ | ..-+.|...+
T Consensus 91 lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a-~~lPvilYN~P~~t-----------g----~~l~~e~i~~- 153 (299)
T COG0329 91 LAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEA-VDLPVILYNIPSRT-----------G----VDLSPETIAR- 153 (299)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHh-cCCCEEEEeCcccc-----------C----CCCCHHHHHH-
Confidence 4445665 455334444444444333321 1333322 111111 1 1113343333
Q ss_pred HHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCC-CceeccCHHHHHHH
Q psy7785 474 VNACKSFKLSIPLVVRLEGTNVQEGKRILDESKL-PLIFASDLDEAANW 521 (525)
Q Consensus 474 ~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 521 (525)
.++ . +.=|-+|=.+.+...-+++....+. .+.++.=.|+.+..
T Consensus 154 --la~-~--~nivgiKd~~gd~~~~~~~~~~~~~~~f~v~~G~d~~~~~ 197 (299)
T COG0329 154 --LAE-H--PNIVGVKDSSGDLDRLEEIIAALGDRDFIVLSGDDELALP 197 (299)
T ss_pred --Hhc-C--CCEEEEEeCCcCHHHHHHHHHhcCccCeeEEeCchHHHHH
Confidence 232 1 3447789999999999998877544 45666666664443
No 229
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=47.73 E-value=2.7e+02 Score=29.80 Aligned_cols=158 Identities=13% Similarity=0.093 Sum_probs=79.2
Q ss_pred eeecCCCCHHHHHHHHHHHhcCCCccEEEEEec-ccccChHHHHHHHHHHHHhcCCCCcEEEEe-CCcchHHHHHHHhhC
Q psy7785 332 LDVGGGVNEESIIQAFRIISSDSNVKCILVNVF-GGIVNCATIAKGLVNACKSFKLSIPLVVRL-EGTNVQEGKRILDES 409 (525)
Q Consensus 332 lDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~-~~~~~~~~ia~~i~~a~~~~~~~kPivv~~-~g~~~~~~~~~L~~~ 409 (525)
-|+.++...+++.++++.+.+.-+.+.|+|... ....-.+++ +++++.+++. .++||+... .|..
T Consensus 61 ~Div~G~~~~~L~~aI~~i~~~~~P~~I~V~tTC~se~IGDDi-~~v~~~~~~~-~~~pVi~v~tpgf~----------- 127 (407)
T TIGR01279 61 SDLSSAAPAEELDRVVEQIKRDRNPSVIFLLSSCTPEVIKMDL-EGLAERLSTN-FGVPVLFAPASGLD----------- 127 (407)
T ss_pred hhhhcccchHHHHHHHHHHHhhcCCCEEEEECCchHHHHHhhH-HHHHHHHHHh-hCCCEEEeeCCCcc-----------
Confidence 356655544788899998888767788887532 211112222 2333333321 578988643 2221
Q ss_pred CCCccccCCHHHHHHHHHHhhccc-CCCCeEEEeCC----CCHHHHHHHHHHCCCCe-EEEcChhHHHHHHHHhhhcCCC
Q psy7785 410 KLPLIFASDLDEAASLVNACKSFK-LSIPLVVRLEG----TNVQEGKRILDESKLPL-IFASDLDEAASLVNACKSFKLS 483 (525)
Q Consensus 410 Gvpvf~~~s~~~Av~Al~~l~~~~-~~~P~~~~l~g----~~e~eak~LL~ayGIpv-~lA~s~deAv~~~~aa~~~~~G 483 (525)
| ... ...+.+++++....... ...|-...+.| ....|-+++|+..||++ .+..+.+ ..+ ......|
T Consensus 128 g-~~~--~G~~~~~~alv~~~~~~~~~~~~~vniiG~~~~~d~~elk~lL~~~Gi~v~~~lpd~~-~~e----~~~~~~~ 199 (407)
T TIGR01279 128 Y-TFT--QGEDTVLAALVPFCPEAPASEQRALVLVGSVNDIVADQLRLELKQLGIPVVGFLPASH-FTE----LPVIGPG 199 (407)
T ss_pred c-cHH--HHHHHHHHHHHHhhccccCCCCCcEEEEeccChhhHHHHHHHHHHcCCeEEEEeCCCC-cch----hhhcCCC
Confidence 0 000 11244455554432111 11111112222 23468999999999999 2444431 111 1111014
Q ss_pred CcEEEEEecCChHHHHHhhhh-CCCCceec
Q psy7785 484 IPLVVRLEGTNVQEGKRILDE-SKLPLIFA 512 (525)
Q Consensus 484 ~PVVlKi~~~~~~~~~~~~~~-~~~~~~~~ 512 (525)
.+++ .+++-...+-+.|.+ .|+||...
T Consensus 200 ~~~~--~~~~~~~~~A~~Le~~~GiP~~~~ 227 (407)
T TIGR01279 200 TVVA--PLQPYLSDTATTLRRERGAKVLSA 227 (407)
T ss_pred eEEE--EechHHHHHHHHHHHHhCCccccC
Confidence 4443 455555567788876 88887543
No 230
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=45.94 E-value=2.9e+02 Score=27.91 Aligned_cols=135 Identities=17% Similarity=0.220 Sum_probs=0.0
Q ss_pred cCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccCh-------------------------HHHHHHHH
Q psy7785 324 HGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNC-------------------------ATIAKGLV 378 (525)
Q Consensus 324 ~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~-------------------------~~ia~~i~ 378 (525)
.|++..||+=+...... ..+.+..+.+..+.+++++-..+..... +...+.+.
T Consensus 5 ~G~~~~nP~~~aag~~~--~~~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~ 82 (296)
T cd04740 5 AGLRLKNPVILASGTFG--FGEELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELL 82 (296)
T ss_pred CCEEcCCCCEECCCCCC--CHHHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHH
Q ss_pred HHHHhcCCCCcEEEEeCCc---chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHH
Q psy7785 379 NACKSFKLSIPLVVRLEGT---NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILD 455 (525)
Q Consensus 379 ~a~~~~~~~kPivv~~~g~---~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ 455 (525)
+..++ .+.|+++.+.|. ....+.+.+.+.|+-.+ .+.
T Consensus 83 ~~~~~--~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~i-------------ElN------------------------- 122 (296)
T cd04740 83 PWLRE--FGTPVIASIAGSTVEEFVEVAEKLADAGADAI-------------ELN------------------------- 122 (296)
T ss_pred HHhhc--CCCcEEEEEecCCHHHHHHHHHHHHHcCCCEE-------------EEE-------------------------
Q ss_pred HCCCCe------EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhh
Q psy7785 456 ESKLPL------IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILD 503 (525)
Q Consensus 456 ayGIpv------~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~ 503 (525)
++.|. .+..+++...+.+++.++. .++||.+|+ +++.++..++..
T Consensus 123 -~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~-~~~Pv~vKl-~~~~~~~~~~a~ 173 (296)
T cd04740 123 -ISCPNVKGGGMAFGTDPEAVAEIVKAVKKA-TDVPVIVKL-TPNVTDIVEIAR 173 (296)
T ss_pred -CCCCCCCCCcccccCCHHHHHHHHHHHHhc-cCCCEEEEe-CCCchhHHHHHH
No 231
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=45.89 E-value=95 Score=30.87 Aligned_cols=100 Identities=16% Similarity=0.170 Sum_probs=59.2
Q ss_pred CcEEEEec-chhHHHHHHHHHHHcCCCCCCee--ee-----cCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHH
Q psy7785 302 GNIGCLVN-GAGLAMATMDIIKLHGGEPANFL--DV-----GGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATI 373 (525)
Q Consensus 302 ~rIaIitn-sGG~gvlaaD~~~~~Gl~~aNPl--Dl-----~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~i 373 (525)
+||+++|. --=..-...+.+++.|+++.+.. ++ -+..+++.+.+++..+ .+|+.|+||+. +++ . ..
T Consensus 121 ~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~-~~~~aDAifis-CTn-L---rt 194 (239)
T TIGR02990 121 RRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAA-FDPDADALFLS-CTA-L---RA 194 (239)
T ss_pred CEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHh-cCCCCCEEEEe-CCC-c---hh
Confidence 58999885 22233345567888888653332 22 3446677777777666 57899999985 322 1 12
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHHhhCCCCc
Q psy7785 374 AKGLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL 413 (525)
Q Consensus 374 a~~i~~a~~~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpv 413 (525)
.+.|-++-++ .+|||+.+ +..-.+..|+..|++.
T Consensus 195 ~~vi~~lE~~--lGkPVlsS----Nqat~W~~Lr~~G~~~ 228 (239)
T TIGR02990 195 ATCAQRIEQA--IGKPVVTS----NQATAWRCLRLCGDPD 228 (239)
T ss_pred HHHHHHHHHH--HCCCEEEH----HHHHHHHHHHHcCCCC
Confidence 2233233233 68999742 3344577788878764
No 232
>TIGR01506 ribC_arch riboflavin synthase. This archaeal protein catalyzes the same reaction, the final step in riboflavin biosynthesis, as bacterial riboflavin biosynthesis alpha chain. However, it is more similar in sequence to 6,7-dimethyl-8-ribityllumazine synthase, which catalyzes the previous reaction and which (in bacteria) is called the riboflavin synthase beta chain.
Probab=45.62 E-value=2.5e+02 Score=26.00 Aligned_cols=109 Identities=10% Similarity=-0.018 Sum_probs=64.9
Q ss_pred HHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEe--c-ccc--cChHHHHHHHHHHHHhcCCCC
Q psy7785 314 AMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNV--F-GGI--VNCATIAKGLVNACKSFKLSI 388 (525)
Q Consensus 314 gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~--~-~~~--~~~~~ia~~i~~a~~~~~~~k 388 (525)
+.-+.|.+..+| .-.+ +++.--+-.-.+.-+++.+.++.++|+++..- . +.. .+...++.+|.+..-+ +++
T Consensus 15 ~~gA~~~L~~~g-~g~~-i~v~~VPGa~EiP~aak~l~~~~~~DaVIaLG~VIrGeT~Hfd~V~vs~GL~~lsl~--~~~ 90 (151)
T TIGR01506 15 GGAAIDELRKHT-AGIK-IIRRTVPGIKDLPVAAKKLLEEEGCEMVITLGWVGPEEKDKLSYHEASTGLIQVQLM--TNK 90 (151)
T ss_pred HHHHHHHHHhcC-CCCe-EEEEECCcHhHHHHHHHHHHhcCCCCEEEEeceEEcCCCCcEeHHHHHHHHHHHHhh--hCC
Confidence 334678888865 2233 56543333444666777777777899999742 2 222 2234777888887666 789
Q ss_pred cEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhc
Q psy7785 389 PLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKS 431 (525)
Q Consensus 389 Pivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~ 431 (525)
||...+.-++.+++.+ ++|.-.- +--.+|+.++..+..
T Consensus 91 PVi~VlT~e~eeQA~~---Rag~~~~--nkG~eaA~aaleMi~ 128 (151)
T TIGR01506 91 HVIDVTVHEDEAEDPE---ELKVLAD--NRAREHAQNLIMLLF 128 (151)
T ss_pred CEEEEEeeCCHHHHHH---Hhccccc--ChHHHHHHHHHHHHH
Confidence 9987444444444444 3444333 555666666666543
No 233
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=45.41 E-value=2e+02 Score=24.68 Aligned_cols=100 Identities=21% Similarity=0.267 Sum_probs=55.6
Q ss_pred HHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCC-CCcEEEE
Q psy7785 315 MATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKL-SIPLVVR 393 (525)
Q Consensus 315 vlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~-~kPivv~ 393 (525)
.+.++.+...|.++ ++++.+.+.+.+.+++.. -+.|.|.+... .......+..+++..++... +.+| .
T Consensus 17 ~~~~~~l~~~G~~V---~~lg~~~~~~~l~~~~~~----~~pdvV~iS~~--~~~~~~~~~~~i~~l~~~~~~~~~i--~ 85 (119)
T cd02067 17 NIVARALRDAGFEV---IDLGVDVPPEEIVEAAKE----EDADAIGLSGL--LTTHMTLMKEVIEELKEAGLDDIPV--L 85 (119)
T ss_pred HHHHHHHHHCCCEE---EECCCCCCHHHHHHHHHH----cCCCEEEEecc--ccccHHHHHHHHHHHHHcCCCCCeE--E
Confidence 46678888889876 788888777755554432 35665665322 12233445666666666423 3333 3
Q ss_pred eCCcchHHHHHHHhhCCCCccccCCHHHHHHHH
Q psy7785 394 LEGTNVQEGKRILDESKLPLIFASDLDEAASLV 426 (525)
Q Consensus 394 ~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al 426 (525)
.+|.......+.+.+.|+-.+ +.+..+++..+
T Consensus 86 vGG~~~~~~~~~~~~~G~D~~-~~~~~~~~~~~ 117 (119)
T cd02067 86 VGGAIVTRDFKFLKEIGVDAY-FGPATEAVEVL 117 (119)
T ss_pred EECCCCChhHHHHHHcCCeEE-ECCHHHHHHHH
Confidence 445322222356788887544 24444555443
No 234
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=44.83 E-value=1.1e+02 Score=30.96 Aligned_cols=81 Identities=16% Similarity=0.211 Sum_probs=51.5
Q ss_pred CCCccc-cCCHHHHHHHHHHhhcccCCCCeEEEeCCC-CHHHHHHHHHHCCCCe--EEEcChhHHHHHHHHhhhcCCCCc
Q psy7785 410 KLPLIF-ASDLDEAASLVNACKSFKLSIPLVVRLEGT-NVQEGKRILDESKLPL--IFASDLDEAASLVNACKSFKLSIP 485 (525)
Q Consensus 410 Gvpvf~-~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~-~e~eak~LL~ayGIpv--~lA~s~deAv~~~~aa~~~~~G~P 485 (525)
+.|..+ ..++++|++...++.+-. -.-...++|. .-.+.-+.|...|||| ++==++.-+. .+ .||
T Consensus 82 DmPF~sy~~s~~~a~~nA~r~~ke~--gA~aVKlEGG~~~~~~i~~L~~~gIPV~gHiGLtPQ~v~-------~~-GGy- 150 (268)
T COG0413 82 DLPFGSYEVSPEQALKNAARLMKEA--GADAVKLEGGEEMAETIKRLTERGIPVMGHIGLTPQSVN-------WL-GGY- 150 (268)
T ss_pred CCCCcccCCCHHHHHHHHHHHHHHh--CCCEEEEcCCHHHHHHHHHHHHcCCceEEEecCChhhhh-------cc-CCe-
Confidence 455554 248899988888776411 0123456654 2346777888889998 5544555322 22 255
Q ss_pred EEEEEecCChHHHHHhhhh
Q psy7785 486 LVVRLEGTNVQEGKRILDE 504 (525)
Q Consensus 486 VVlKi~~~~~~~~~~~~~~ 504 (525)
|++|.+.++++|++.+
T Consensus 151 ---kvqGr~~~~a~~l~~d 166 (268)
T COG0413 151 ---KVQGRTEESAEKLLED 166 (268)
T ss_pred ---eeecCCHHHHHHHHHH
Confidence 7788888888888874
No 235
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=44.07 E-value=2.5e+02 Score=29.44 Aligned_cols=14 Identities=14% Similarity=0.304 Sum_probs=10.3
Q ss_pred HHhcCCCccEEEEE
Q psy7785 349 IISSDSNVKCILVN 362 (525)
Q Consensus 349 ~ll~dp~vd~vlv~ 362 (525)
.++++-++|+|+|.
T Consensus 49 ~i~d~aGvD~ILVG 62 (332)
T PLN02424 49 VHVDSAGIDVCLVG 62 (332)
T ss_pred HHHHHcCCCEEEEC
Confidence 35566789999984
No 236
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=43.99 E-value=3.6e+02 Score=27.33 Aligned_cols=125 Identities=20% Similarity=0.251 Sum_probs=65.6
Q ss_pred HHHHhcCCCccEEEEEecc-----cc-----cChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHHhhCCCCcccc
Q psy7785 347 FRIISSDSNVKCILVNVFG-----GI-----VNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFA 416 (525)
Q Consensus 347 l~~ll~dp~vd~vlv~~~~-----~~-----~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~ 416 (525)
.-.+.++.++|+|++.... |. ...+++..-.....+. .+.|+++.- +|+.+.
T Consensus 27 sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg--~~~~~vv~D----------------mPf~sy 88 (263)
T TIGR00222 27 FAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRG--APNCLIVTD----------------LPFMSY 88 (263)
T ss_pred HHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhh--CCCceEEeC----------------CCcCCC
Confidence 3345566789999974221 11 1223333322233333 345665532 333333
Q ss_pred CCHHHHHHHHHHhhc-ccCCCCeEEEeCCCCH-HHHHHHHHHCCCCe--EEEcChhHHHHHHHHhhhcCCCCcEEEEEec
Q psy7785 417 SDLDEAASLVNACKS-FKLSIPLVVRLEGTNV-QEGKRILDESKLPL--IFASDLDEAASLVNACKSFKLSIPLVVRLEG 492 (525)
Q Consensus 417 ~s~~~Av~Al~~l~~-~~~~~P~~~~l~g~~e-~eak~LL~ayGIpv--~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~ 492 (525)
.+++++++...++.+ .. -....++|..+ .+--+.|...|||| ++=-++.-+. .+ .|| |++|
T Consensus 89 ~~~e~a~~na~rl~~eaG---a~aVkiEgg~~~~~~i~~l~~~gIpV~gHiGltPq~a~-------~~-ggy----~~qg 153 (263)
T TIGR00222 89 ATPEQALKNAARVMQETG---ANAVKLEGGEWLVETVQMLTERGVPVVGHLGLTPQSVN-------IL-GGY----KVQG 153 (263)
T ss_pred CCHHHHHHHHHHHHHHhC---CeEEEEcCcHhHHHHHHHHHHCCCCEEEecCCCceeEe-------ec-CCe----eecC
Confidence 568888877776653 11 12345665422 24446777788887 3333333211 21 144 6678
Q ss_pred CChHHHHHhhhh
Q psy7785 493 TNVQEGKRILDE 504 (525)
Q Consensus 493 ~~~~~~~~~~~~ 504 (525)
...+++.+++++
T Consensus 154 rt~~~a~~~i~~ 165 (263)
T TIGR00222 154 KDEEAAKKLLED 165 (263)
T ss_pred CCHHHHHHHHHH
Confidence 888988888884
No 237
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=43.79 E-value=1e+02 Score=30.39 Aligned_cols=77 Identities=21% Similarity=0.322 Sum_probs=51.0
Q ss_pred cchhHHHHHHH--HHHHcCC---------CCCCeeeecC--CCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHH
Q psy7785 309 NGAGLAMATMD--IIKLHGG---------EPANFLDVGG--GVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAK 375 (525)
Q Consensus 309 nsGG~gvlaaD--~~~~~Gl---------~~aNPlDl~g--~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~ 375 (525)
.|||.|+. +| .+..+|. ...|+-.+.+ ..+++.+.+-++.+++|-.++++-+...+ ..+..+
T Consensus 9 ~sggaGi~-aD~~t~~~~g~~~~~v~T~~t~q~~~~v~~~~~~~~~~~~~q~~~~~~d~~~~aikiG~l~----~~~~~~ 83 (254)
T TIGR00097 9 SGGGAGIQ-ADLKTFSALGVFGTSVITALTAQNTRGVTGVYPIPPDFVEAQLDAVFSDIPVDAAKTGMLA----SAEIVE 83 (254)
T ss_pred CCcHHHHH-HHHHHHHHcCCeecceeEEEEeEcCcceEEEEECCHHHHHHHHHHHHhCCCCCEEEECCcC----CHHHHH
Confidence 57788875 47 4566664 3467655543 24466789999999999889988864332 245667
Q ss_pred HHHHHHHhcCCCC-cEEE
Q psy7785 376 GLVNACKSFKLSI-PLVV 392 (525)
Q Consensus 376 ~i~~a~~~~~~~k-Pivv 392 (525)
.+++.+++ .++ |+++
T Consensus 84 ~i~~~~~~--~~~~~vVl 99 (254)
T TIGR00097 84 AVARKLRE--YPVRPLVV 99 (254)
T ss_pred HHHHHHHh--cCCCcEEE
Confidence 77777766 345 5664
No 238
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=43.69 E-value=67 Score=34.01 Aligned_cols=141 Identities=13% Similarity=0.207 Sum_probs=69.9
Q ss_pred cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEE-ecccccChHHHHHHHHHHH
Q psy7785 303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVN-VFGGIVNCATIAKGLVNAC 381 (525)
Q Consensus 303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~-~~~~~~~~~~ia~~i~~a~ 381 (525)
++.|-|-+.=.++-..+.+.+.|+..-- +...+.. .++... +-+|-.++. .+....+. .+....
T Consensus 18 ~~~i~~~~shsaL~I~~gAkeeGf~ti~-v~~~~~~---~~y~~~------~~~De~i~v~~~~di~~~-----~~~~~l 82 (358)
T PRK13278 18 NITIATIGSHSSLQILKGAKKEGFRTIA-ICKKKRE---VFYKRF------PVADEFIIVDDFSDILNE-----AVQEKL 82 (358)
T ss_pred cceEEEEecccHHHHHHHHHHCCCeEEE-EEeCCCc---cccccc------cccceEEEEcchhhhcCH-----HHHHHH
Confidence 5666666666677788999999985200 0011110 111111 112323322 12111111 111122
Q ss_pred HhcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe
Q psy7785 382 KSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL 461 (525)
Q Consensus 382 ~~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv 461 (525)
.+ .+++++..+..........+...|+|+| .+.+ +++ +.+ +-..-+++|+.+|||+
T Consensus 83 ~~---~~~iiIp~gs~v~y~~~d~l~~~~~p~~--gn~~-~l~----~e~--------------dK~~~k~~L~~aGIp~ 138 (358)
T PRK13278 83 RE---MNAILIPHGSFVAYLGLENVEKFKVPMF--GNRE-ILR----WEA--------------DRDKERKLLEEAGIRI 138 (358)
T ss_pred hh---cCcEEEeCCCcceeecHHHHHHCCCCcC--CCHH-HHH----Hhc--------------CHHHHHHHHHHcCCCC
Confidence 22 3565554422222222445556889988 6554 121 211 1224678999999998
Q ss_pred -EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785 462 -IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN 494 (525)
Q Consensus 462 -~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~ 494 (525)
....+.+ ++ +||||+|-.+.-
T Consensus 139 p~~~~~~~----------~i--~~PvIVKp~~g~ 160 (358)
T PRK13278 139 PRKYESPE----------DI--DRPVIVKLPGAK 160 (358)
T ss_pred CCEeCCHH----------Hc--CCCEEEEeCCCC
Confidence 5454433 22 799999996653
No 239
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=43.66 E-value=72 Score=31.92 Aligned_cols=62 Identities=16% Similarity=0.433 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHCCCCeEEEcChhH--HHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCc--eeccCHHHHHHH
Q psy7785 446 NVQEGKRILDESKLPLIFASDLDE--AASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL--IFASDLDEAANW 521 (525)
Q Consensus 446 ~e~eak~LL~ayGIpv~lA~s~de--Av~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 521 (525)
+.+.=++|++.|||.+.++++.-. .-++.++|+++ |.||+| ++++.++| .++++++|+.+|
T Consensus 178 s~e~n~aL~~~~~i~~lVtK~SG~~g~~eKi~AA~~l--gi~viv-------------I~RP~~~~~~~~~~~~~e~~~~ 242 (248)
T PRK08057 178 SLELERALLRQHRIDVVVTKNSGGAGTEAKLEAAREL--GIPVVM-------------IARPALPYADREFEDVAELVAW 242 (248)
T ss_pred CHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHc--CCeEEE-------------EeCCCCCCCCcccCCHHHHHHH
Confidence 556678999999999977776554 34555688885 999876 22322222 246777777765
Q ss_pred h
Q psy7785 522 F 522 (525)
Q Consensus 522 ~ 522 (525)
-
T Consensus 243 l 243 (248)
T PRK08057 243 L 243 (248)
T ss_pred H
Confidence 3
No 240
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=43.26 E-value=3.7e+02 Score=27.29 Aligned_cols=107 Identities=16% Similarity=0.197 Sum_probs=61.0
Q ss_pred CeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cChH---HHHHHHHHHHHhcCCCCcEEEEeCCcchHHHH
Q psy7785 330 NFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNCA---TIAKGLVNACKSFKLSIPLVVRLEGTNVQEGK 403 (525)
Q Consensus 330 NPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~~---~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~ 403 (525)
-|.|--|..+.+.+.+-++.+.+...+|+++++-..|. ...+ .+.+..++... .+.||++...+....++.
T Consensus 10 TPf~~dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~---~~~pvi~gv~~~~t~~~i 86 (290)
T TIGR00683 10 VSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAK---DQIALIAQVGSVNLKEAV 86 (290)
T ss_pred cCCCCCCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhC---CCCcEEEecCCCCHHHHH
Confidence 45666678888889999999887544999998644331 1222 33333333322 357888876654444443
Q ss_pred ---HHHhhCCC-------CccccCCHHHHHHHHHHhhcccCCCCeE
Q psy7785 404 ---RILDESKL-------PLIFASDLDEAASLVNACKSFKLSIPLV 439 (525)
Q Consensus 404 ---~~L~~~Gv-------pvf~~~s~~~Av~Al~~l~~~~~~~P~~ 439 (525)
+...+.|+ |.|...+.++.+..+.++.+.....|+.
T Consensus 87 ~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~ 132 (290)
T TIGR00683 87 ELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMI 132 (290)
T ss_pred HHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEE
Confidence 34455665 5554556666555555554321235544
No 241
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=42.84 E-value=26 Score=27.12 Aligned_cols=51 Identities=16% Similarity=0.172 Sum_probs=29.7
Q ss_pred HHHHHHHHCCCCeEEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhhh
Q psy7785 449 EGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDE 504 (525)
Q Consensus 449 eak~LL~ayGIpv~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~ 504 (525)
-.+.+|++.|||+.+-....-...- .... .|+ +-+.|...+.++|++||.+
T Consensus 14 ~i~~~L~~~gI~~~v~~~~~~~~~g--~~g~--~~~-~~v~V~~~d~~~A~~il~~ 64 (67)
T PF09413_consen 14 LIKGLLEENGIPAFVKNEHMSGYAG--EPGT--GGQ-VEVYVPEEDYERAREILEE 64 (67)
T ss_dssp HHHHHHHHTT--EE--S----SS-----S----SSS-EEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHhCCCcEEEECCccchhhc--ccCc--cCc-eEEEECHHHHHHHHHHHHH
Confidence 4788999999998443332221110 0111 133 8899999999999999987
No 242
>PRK07475 hypothetical protein; Provisional
Probab=41.94 E-value=1.4e+02 Score=29.66 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=21.8
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCCC
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGGEP 328 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~ 328 (525)
++||||+|..+-. +.-+.++..|..+
T Consensus 122 ~~kIGILtt~~t~--l~~~~l~~~Gi~~ 147 (245)
T PRK07475 122 GQKVGILTADASS--LTPAHLLAVGVPP 147 (245)
T ss_pred CCeEEEEeCCchh--hhHHHHHhCCCCC
Confidence 4699999999974 7789999999863
No 243
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=41.15 E-value=1.6e+02 Score=32.11 Aligned_cols=86 Identities=23% Similarity=0.338 Sum_probs=56.5
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCC-CCCC-----eeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc------c
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGG-EPAN-----FLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI------V 368 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl-~~aN-----PlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~------~ 368 (525)
..+|||||.--|+++ -|.+.-.-= -|.- |.=+-|...++.+.++++..-+.+++|.++|.=.||. .
T Consensus 135 p~~IGVITS~tgAai--rDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~F 212 (440)
T COG1570 135 PKKIGVITSPTGAAL--RDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWAF 212 (440)
T ss_pred CCeEEEEcCCchHHH--HHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhcc
Confidence 468999999988776 476654321 1212 2223466667789999999999999999988645542 2
Q ss_pred ChHHHHHHHHHHHHhcCCCCcEEEEe
Q psy7785 369 NCATIAKGLVNACKSFKLSIPLVVRL 394 (525)
Q Consensus 369 ~~~~ia~~i~~a~~~~~~~kPivv~~ 394 (525)
+.+.++++|.. +..||+...
T Consensus 213 NdE~vaRAi~~------s~iPvISAV 232 (440)
T COG1570 213 NDEIVARAIAA------SRIPVISAV 232 (440)
T ss_pred ChHHHHHHHHh------CCCCeEeec
Confidence 33444554433 678988543
No 244
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=40.71 E-value=1.6e+02 Score=29.97 Aligned_cols=100 Identities=12% Similarity=0.201 Sum_probs=53.1
Q ss_pred cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCC--CCHHH------------HHHHHHHHhcCCCccEEEEEeccccc
Q psy7785 303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGG--VNEES------------IIQAFRIISSDSNVKCILVNVFGGIV 368 (525)
Q Consensus 303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~--a~~~~------------~~~al~~ll~dp~vd~vlv~~~~~~~ 368 (525)
|||||..||..+-.-.-.+...+.. +.+.+- .++++ .+..++.++++|++|+|+|..+...
T Consensus 5 rvgiiG~G~~~~~~~~~~~~~~~~~----~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~- 79 (342)
T COG0673 5 RVGIIGAGGIAGKAHLPALAALGGG----LELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNAL- 79 (342)
T ss_pred EEEEEcccHHHHHHhHHHHHhCCCc----eEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChh-
Confidence 7899988866655556666554421 233222 22221 2344888999999999998655321
Q ss_pred ChHHHHHHHHHHHHhcCCCCcEEEEe-CCcchHHHH---HHHhhCCCCcc
Q psy7785 369 NCATIAKGLVNACKSFKLSIPLVVRL-EGTNVQEGK---RILDESKLPLI 414 (525)
Q Consensus 369 ~~~~ia~~i~~a~~~~~~~kPivv~~-~g~~~~~~~---~~L~~~Gvpvf 414 (525)
-.+-+..+++ .+|+|++=- ...+.+++. +.-+++|+.++
T Consensus 80 ----H~e~~~~AL~---aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~ 122 (342)
T COG0673 80 ----HAELALAALE---AGKHVLCEKPLALTLEEAEELVELARKAGVKLM 122 (342)
T ss_pred ----hHHHHHHHHh---cCCEEEEcCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 1122233333 356665521 222334443 33345677654
No 245
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=40.33 E-value=1.2e+02 Score=29.74 Aligned_cols=48 Identities=6% Similarity=0.138 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEE
Q psy7785 338 VNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVR 393 (525)
Q Consensus 338 a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~ 393 (525)
.++...++..+.+. .|++|++|+. +... ..++.|...-++ .++||+.+
T Consensus 163 ~~P~~~y~lAk~~~-~~~~DaiFiS-CTnl----Rt~eii~~lE~~--~G~PVvsS 210 (238)
T COG3473 163 QEPWAVYRLAKEVF-TPDADAIFIS-CTNL----RTFEIIEKLERD--TGVPVVSS 210 (238)
T ss_pred cChHHHHHHHHHhc-CCCCCeEEEE-eecc----ccHHHHHHHHHH--hCCceeec
Confidence 34443333333333 7899999985 3221 112233233333 67888753
No 246
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=40.06 E-value=1.1e+02 Score=31.56 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=36.3
Q ss_pred cEEEEecchhHH-------HHHHHHHHHcCCCCC--Ceeeec---CCCCHHHHHHHHHHHhcCCCccEEEEE
Q psy7785 303 NIGCLVNGAGLA-------MATMDIIKLHGGEPA--NFLDVG---GGVNEESIIQAFRIISSDSNVKCILVN 362 (525)
Q Consensus 303 rIaIitnsGG~g-------vlaaD~~~~~Gl~~a--NPlDl~---g~a~~~~~~~al~~ll~dp~vd~vlv~ 362 (525)
+|+|++.|++.. -.+.+.++..|+++. .-+.-. -..+++.=.+-|..++.||++|+|+..
T Consensus 2 ~I~ivAPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~Dp~i~aI~~~ 73 (308)
T cd07062 2 TIAVVSPSSGIPGELPHRLERAKKRLENLGFEVVEGPNALKGDKYLSASPEERAEELMAAFADPSIKAIIPT 73 (308)
T ss_pred eEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEEecccccccccccCCHHHHHHHHHHHhcCCCCCEEEEC
Confidence 799999999843 234477788888531 111111 122333334445556689999999864
No 247
>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]
Probab=39.66 E-value=34 Score=35.50 Aligned_cols=32 Identities=31% Similarity=0.438 Sum_probs=25.6
Q ss_pred CCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecC
Q psy7785 457 SKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGT 493 (525)
Q Consensus 457 yGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~ 493 (525)
.|+|. ..|+|.+|-.+ ++++ +|||+|+|=+=.
T Consensus 125 LglpTs~Y~fa~s~~e~~~---a~~~--iGfPcvvKPvMS 159 (394)
T COG0027 125 LGLPTSKYRFADSLEELRA---AVEK--IGFPCVVKPVMS 159 (394)
T ss_pred hCCCCccccccccHHHHHH---HHHH--cCCCeecccccc
Confidence 39998 88999999887 5667 499999996543
No 248
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=39.44 E-value=1.8e+02 Score=28.93 Aligned_cols=117 Identities=10% Similarity=0.151 Sum_probs=58.3
Q ss_pred cEEEEecchhHHHHHHHHHHHc-CCCCCCeeeecC-------CCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHH
Q psy7785 303 NIGCLVNGAGLAMATMDIIKLH-GGEPANFLDVGG-------GVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIA 374 (525)
Q Consensus 303 rIaIitnsGG~gvlaaD~~~~~-Gl~~aNPlDl~g-------~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia 374 (525)
||+|+..+|..|-..+..+... +++..-=+|... .... ....-++.+++ ++|.++.... +....
T Consensus 3 kV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i-~~~~dl~~ll~--~~DvVid~t~-----p~~~~ 74 (257)
T PRK00048 3 KVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGV-AITDDLEAVLA--DADVLIDFTT-----PEATL 74 (257)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCc-cccCCHHHhcc--CCCEEEECCC-----HHHHH
Confidence 6899888788888888777654 332111111111 0000 01122333444 4776654322 22222
Q ss_pred HHHHHHHHhcCCCCcEEEEeCCcchHHHHHHH-hhCCCCccccCCHHHHHHHHHHhh
Q psy7785 375 KGLVNACKSFKLSIPLVVRLEGTNVQEGKRIL-DESKLPLIFASDLDEAASLVNACK 430 (525)
Q Consensus 375 ~~i~~a~~~~~~~kPivv~~~g~~~~~~~~~L-~~~Gvpvf~~~s~~~Av~Al~~l~ 430 (525)
.++..+.+ .++|+++...|...++..++. ...++|++...+..-++..+.++.
T Consensus 75 -~~~~~al~--~G~~vvigttG~s~~~~~~l~~aa~~~~v~~s~n~s~g~~~~~~l~ 128 (257)
T PRK00048 75 -ENLEFALE--HGKPLVIGTTGFTEEQLAELEEAAKKIPVVIAPNFSIGVNLLMKLA 128 (257)
T ss_pred -HHHHHHHH--cCCCEEEECCCCCHHHHHHHHHHhcCCCEEEECcchHHHHHHHHHH
Confidence 33333333 589999776564333332222 237888775555555555555443
No 249
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=39.37 E-value=1.1e+02 Score=33.72 Aligned_cols=84 Identities=24% Similarity=0.339 Sum_probs=55.4
Q ss_pred cEEEEe---cchhHHHHH-HHHHHHcCCC---------CCCeeeecC--CCCHHHHHHHHHHHhcCCCccEEEEEecccc
Q psy7785 303 NIGCLV---NGAGLAMAT-MDIIKLHGGE---------PANFLDVGG--GVNEESIIQAFRIISSDSNVKCILVNVFGGI 367 (525)
Q Consensus 303 rIaIit---nsGG~gvla-aD~~~~~Gl~---------~aNPlDl~g--~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~ 367 (525)
.|.+|+ .|||+|+.+ .=.+...|.. ..|...+.+ ..+.+-+.+-++.+++|-.+|++.+...+
T Consensus 11 ~vL~IaGsD~~gGAGi~aDl~t~~a~G~~~~~v~Talt~q~t~~v~~~~~~~~~~~~~ql~~~~~d~~~~aik~G~l~-- 88 (502)
T PLN02898 11 HVLTVAGSDSGAGAGIQADIKACAARGVYCTTAITAVTAQNTVGVQGVHAVPLDFVAEQLKSVLSDMPVDVVKTGMLP-- 88 (502)
T ss_pred eEEEEeeeCCCcHHHHHHHHHHHHHcCCEecceeeEEEEEcCCccceeeeCCHHHHHHHHHHHHhCCCCCEEEECCcC--
Confidence 455554 578999988 7788888862 346544433 34445577888889988889988864332
Q ss_pred cChHHHHHHHHHHHHhcCCCC-cEEE
Q psy7785 368 VNCATIAKGLVNACKSFKLSI-PLVV 392 (525)
Q Consensus 368 ~~~~~ia~~i~~a~~~~~~~k-Pivv 392 (525)
..++++.+.+..++ .+. |+++
T Consensus 89 --~~~~i~~i~~~l~~--~~~~~vVl 110 (502)
T PLN02898 89 --SAEIVKVLCQALKE--FPVKALVV 110 (502)
T ss_pred --CHHHHHHHHHHHHh--CCCCCEEE
Confidence 25667777777766 333 4653
No 250
>COG3148 Uncharacterized conserved protein [Function unknown]
Probab=38.94 E-value=1.5e+02 Score=28.97 Aligned_cols=61 Identities=21% Similarity=0.364 Sum_probs=39.5
Q ss_pred HHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCC-CcEEEEeCCcchHHHHHHHhh----CCCCcc
Q psy7785 346 AFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLS-IPLVVRLEGTNVQEGKRILDE----SKLPLI 414 (525)
Q Consensus 346 al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~-kPivv~~~g~~~~~~~~~L~~----~Gvpvf 414 (525)
-+..++++|+++..+|. + .+.++...++......+ .|+++.+.|+ -.+++++++. +++|+.
T Consensus 93 eLl~ll~~P~~~p~lvf-P------~e~a~e~t~v~~~~p~~k~plfIllDgT-W~eArKMfrksPyLa~lP~v 158 (231)
T COG3148 93 ELLALLANPDYQPYLVF-P------AEYAEELTEVISTAPAEKPPLFILLDGT-WREARKMFRKSPYLADLPVV 158 (231)
T ss_pred HHHHHHhCCCCceEEEc-c------hHHHHHHHHHhhcccccCCceEEEecCc-cHHHHHHHhcCchhccCCcc
Confidence 35567889999998873 2 23334444443332233 5577778887 5788888886 478887
No 251
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=38.84 E-value=1.8e+02 Score=28.59 Aligned_cols=85 Identities=12% Similarity=-0.024 Sum_probs=42.5
Q ss_pred cCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHHhhCCCCcc
Q psy7785 335 GGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLI 414 (525)
Q Consensus 335 ~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf 414 (525)
.|....+.-.++++.+.++ +++++.+.-+....+..+..+.+-........+||..+ .|...+...-.+...||-+|
T Consensus 62 qGg~~~~lR~~s~~~l~~~-~~~g~~igGl~~~~~~~~~~~~l~~i~~~lp~~~pr~l--~G~~~P~~i~~~v~~GvD~f 138 (238)
T PF01702_consen 62 QGGDDKDLRRRSAEELSED-GFDGYAIGGLSPGEEKEERLEILEAIINNLPPDKPRYL--LGVGTPEEILEAVYLGVDLF 138 (238)
T ss_dssp --TT-HHHHHHHHHHHHHS-S-SEEEE-SSSSSSHHHHHHHHHHHHHHCS-TTS-EEE--TTB-SHHHHHHHHHTT--EE
T ss_pred CCCCCHHHHHHHHHHHHhc-ccccccccCCcCCCCHHHHHHHHHHHHhhCCcccceec--cCCCCHHHHHHHHHcCCcEE
Confidence 3444455567778888885 89988874322222223333333222333335799887 45434555666788999999
Q ss_pred ccCCHHHH
Q psy7785 415 FASDLDEA 422 (525)
Q Consensus 415 ~~~s~~~A 422 (525)
.+..|.+.
T Consensus 139 Ds~~p~~~ 146 (238)
T PF01702_consen 139 DSSYPTRL 146 (238)
T ss_dssp EESHHHHH
T ss_pred cchHHHHH
Confidence 44445443
No 252
>KOG1254|consensus
Probab=38.82 E-value=56 Score=35.75 Aligned_cols=93 Identities=24% Similarity=0.221 Sum_probs=55.7
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHH
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEE-SIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVN 379 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~-~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~ 379 (525)
.|.++.+|+|||...-.-+...+.=.-+.-=+-++|+..+- ++-.-+=.-..+|.+|.|++....+....- .+++
T Consensus 159 ~Gsv~~vS~sGGmsnE~nn~isrtt~g~~egiaiggd~~pgSTl~dhi~r~q~~~~vk~Iv~Lgevgg~~ey----~~~e 234 (600)
T KOG1254|consen 159 PGSVIYVSRSGGMSNELNNIISRTTDGPYEGIAIGGDRYPGSTLIDHIPREQHDPLVKFIVVLGEVGGDEEY----TFLE 234 (600)
T ss_pred CccEEEEecCCCcchhhhhhhhheeccceeeeeccCCCccCchHhhhhhhhhccChhheEEeehhhccccee----ehhh
Confidence 46899999999998877777665433333334455554432 344444444568999988875322211111 2344
Q ss_pred HHHhcCCCCcEEEEeCCc
Q psy7785 380 ACKSFKLSIPLVVRLEGT 397 (525)
Q Consensus 380 a~~~~~~~kPivv~~~g~ 397 (525)
+.++-+..||++++..|+
T Consensus 235 ~~k~g~~tkPlVaw~~gt 252 (600)
T KOG1254|consen 235 ANKEGKITKPLVAWCIGT 252 (600)
T ss_pred hhhcCCccCCEEEEecCc
Confidence 555444689999877664
No 253
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=37.84 E-value=3.6e+02 Score=27.33 Aligned_cols=96 Identities=11% Similarity=0.159 Sum_probs=55.2
Q ss_pred CeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc-c--cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHH
Q psy7785 330 NFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG-I--VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGK 403 (525)
Q Consensus 330 NPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~-~--~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~ 403 (525)
-|.|=-|..+.+.+.+-++.+.+ .++|+++++-..| . ... ..+.+..++... .+.||++.... +..++.
T Consensus 10 TPf~~dg~iD~~~l~~l~~~l~~-~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~---~~~pvi~gv~~-~t~~~i 84 (289)
T cd00951 10 THFDADGSFDEDAYRAHVEWLLS-YGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETA---GRVPVLAGAGY-GTATAI 84 (289)
T ss_pred cCCCCCCCcCHHHHHHHHHHHHH-cCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC---CCCCEEEecCC-CHHHHH
Confidence 35566678888889999999886 6899999864433 2 122 233333333322 46899876544 344443
Q ss_pred ---HHHhhCCC-------CccccCCHHHHHHHHHHhh
Q psy7785 404 ---RILDESKL-------PLIFASDLDEAASLVNACK 430 (525)
Q Consensus 404 ---~~L~~~Gv-------pvf~~~s~~~Av~Al~~l~ 430 (525)
+..++.|+ |.|...+.+.-...+..+.
T Consensus 85 ~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~ 121 (289)
T cd00951 85 AYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVC 121 (289)
T ss_pred HHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHH
Confidence 34456666 4453335444444444443
No 254
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=37.71 E-value=3.5e+02 Score=27.69 Aligned_cols=97 Identities=11% Similarity=0.190 Sum_probs=56.3
Q ss_pred CCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cChH---HHHHHHHHHHHhcCCCCcEEEEeCCcchHHH
Q psy7785 329 ANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNCA---TIAKGLVNACKSFKLSIPLVVRLEGTNVQEG 402 (525)
Q Consensus 329 aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~~---~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~ 402 (525)
--|.|=-|+.+.+.+.+-++.+.+ .++|+++++-..|. ...+ .+.+..++... .+.||++...+ +..++
T Consensus 16 vTPf~~dg~iD~~~l~~li~~l~~-~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~---~~~pvi~gv~~-~t~~~ 90 (303)
T PRK03620 16 VTPFDADGSFDEAAYREHLEWLAP-YGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTA---GRVPVIAGAGG-GTAQA 90 (303)
T ss_pred eCCCCCCCCcCHHHHHHHHHHHHH-cCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhC---CCCcEEEecCC-CHHHH
Confidence 356666688888889999998877 58999998654442 1222 23333333322 46888876644 44444
Q ss_pred HH---HHhhCCC-------CccccCCHHHHHHHHHHhh
Q psy7785 403 KR---ILDESKL-------PLIFASDLDEAASLVNACK 430 (525)
Q Consensus 403 ~~---~L~~~Gv-------pvf~~~s~~~Av~Al~~l~ 430 (525)
.+ ...+.|+ |.|...+.+.....+..+.
T Consensus 91 i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va 128 (303)
T PRK03620 91 IEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVC 128 (303)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHH
Confidence 33 4455665 4443345444444444443
No 255
>COG5503 Uncharacterized conserved small protein [Function unknown]
Probab=37.11 E-value=30 Score=27.29 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=26.3
Q ss_pred EEecCChHHHHHhhhhCCCCceeccCHHHHHH
Q psy7785 489 RLEGTNVQEGKRILDESKLPLIFASDLDEAAN 520 (525)
Q Consensus 489 Ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 520 (525)
=+..--+.++|+.|++++.++++++-++||-.
T Consensus 24 Yle~~se~~vR~ll~e~~yniEFI~~lsd~~L 55 (69)
T COG5503 24 YLEADSETKVRQLLKENNYNIEFITPLSDAHL 55 (69)
T ss_pred EEechhHHHHHHHHhccCcceEEEeecchhhh
Confidence 34455567899999999999999999998754
No 256
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=37.00 E-value=54 Score=28.73 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=41.9
Q ss_pred CcEEEEecchhHHHH-HH----HHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 302 GNIGCLVNGAGLAMA-TM----DIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 302 ~rIaIitnsGG~gvl-aa----D~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
..+++|-.|--++.. .. -.|+..|+.. --+.+..+.+.+.+.+.++.+-+||+|+|++|..+..
T Consensus 30 P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~-~~~~l~~~~~~~el~~~i~~lN~D~~V~GIlvq~PLP 98 (117)
T PF00763_consen 30 PKLAIILVGDDPASISYVRSKQKAAEKLGIEF-ELIELPEDISEEELLELIEKLNEDPSVHGILVQLPLP 98 (117)
T ss_dssp -EEEEEEES--HHHHHHHHHHHHHHHHHT-EE-EEEEE-TTSSHHHHHHHHHHHHH-TT-SEEEEESSSS
T ss_pred cEEEEEecCCChhHHHHHHHHHHHHHHcCCce-EEEECCCCcCHHHHHHHHHHHhCCCCCCEEEEcCCCC
Confidence 467777766555533 33 5777778753 2335677888889999999999999999999976643
No 257
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=36.94 E-value=3.1e+02 Score=24.58 Aligned_cols=99 Identities=21% Similarity=0.237 Sum_probs=57.3
Q ss_pred HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCC-CCcEEEEeC
Q psy7785 317 TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKL-SIPLVVRLE 395 (525)
Q Consensus 317 aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~-~kPivv~~~ 395 (525)
.+-.++.+|+++ +|++-+.+++.+.++... .+.|.|.+....+. .....+.+++.+++.+. +.||++ +
T Consensus 19 v~~~L~~~GfeV---idLG~~v~~e~~v~aa~~----~~adiVglS~L~t~--~~~~~~~~~~~l~~~gl~~v~viv--G 87 (128)
T cd02072 19 LDHAFTEAGFNV---VNLGVLSPQEEFIDAAIE----TDADAILVSSLYGH--GEIDCKGLREKCDEAGLKDILLYV--G 87 (128)
T ss_pred HHHHHHHCCCEE---EECCCCCCHHHHHHHHHH----cCCCEEEEeccccC--CHHHHHHHHHHHHHCCCCCCeEEE--E
Confidence 344777888765 788889998876555432 36777776544332 23344555556655433 445544 3
Q ss_pred Cc------chHHHHHHHhhCCCC-ccccC-CHHHHHHHH
Q psy7785 396 GT------NVQEGKRILDESKLP-LIFAS-DLDEAASLV 426 (525)
Q Consensus 396 g~------~~~~~~~~L~~~Gvp-vf~~~-s~~~Av~Al 426 (525)
|. ...+..+.|++.|+- +|.+. ++++.+..+
T Consensus 88 G~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l 126 (128)
T cd02072 88 GNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADL 126 (128)
T ss_pred CCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHH
Confidence 32 223345789999995 56433 455555443
No 258
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=36.29 E-value=97 Score=31.47 Aligned_cols=59 Identities=15% Similarity=0.092 Sum_probs=36.8
Q ss_pred EEEEecchhHHH-----HHHHHHHHcCCCCCCeeee-----cCCCCHHHHHHHHHHHhcCCCccEEEEE
Q psy7785 304 IGCLVNGAGLAM-----ATMDIIKLHGGEPANFLDV-----GGGVNEESIIQAFRIISSDSNVKCILVN 362 (525)
Q Consensus 304 IaIitnsGG~gv-----laaD~~~~~Gl~~aNPlDl-----~g~a~~~~~~~al~~ll~dp~vd~vlv~ 362 (525)
|+||+.|++..- .+.+.++..|+++..+=-+ .-..+++.=.+-|...+.||++|+|+..
T Consensus 1 I~iiapSs~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~a~s~~~Ra~dL~~a~~d~~i~aI~~~ 69 (282)
T cd07025 1 IGIVAPSSPIDEEERLERAIARLESLGLEVVVGPHVLARDGYLAGTDEERAADLNAAFADPEIKAIWCA 69 (282)
T ss_pred CEEEeCCCCCCcHHHHHHHHHHHHhCCCEEEeccchhhhcCccCCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 688898887644 3456777888853211111 1123444445556667789999999864
No 259
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=36.05 E-value=2.9e+02 Score=23.99 Aligned_cols=101 Identities=17% Similarity=0.154 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEe
Q psy7785 315 MATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRL 394 (525)
Q Consensus 315 vlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~ 394 (525)
.+.+..+...|.++ ++++.+.+.+.+.++... -+.|.|.+... .......++.+++.+++...++ +.+..
T Consensus 17 ~~~~~~l~~~G~~v---i~lG~~vp~e~~~~~a~~----~~~d~V~iS~~--~~~~~~~~~~~~~~L~~~~~~~-i~i~~ 86 (122)
T cd02071 17 KVIARALRDAGFEV---IYTGLRQTPEEIVEAAIQ----EDVDVIGLSSL--SGGHMTLFPEVIELLRELGAGD-ILVVG 86 (122)
T ss_pred HHHHHHHHHCCCEE---EECCCCCCHHHHHHHHHH----cCCCEEEEccc--chhhHHHHHHHHHHHHhcCCCC-CEEEE
Confidence 34566777777653 677888777765554432 25666665322 2233455667777766632323 22344
Q ss_pred CCcchHHHHHHHhhCCCCccc-c-CCHHHHHHH
Q psy7785 395 EGTNVQEGKRILDESKLPLIF-A-SDLDEAASL 425 (525)
Q Consensus 395 ~g~~~~~~~~~L~~~Gvpvf~-~-~s~~~Av~A 425 (525)
+|....+....+.+.|+--|. . .+++..+..
T Consensus 87 GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~ 119 (122)
T cd02071 87 GGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDK 119 (122)
T ss_pred ECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHH
Confidence 554445556788899986543 3 345554443
No 260
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=35.79 E-value=1.3e+02 Score=28.47 Aligned_cols=50 Identities=16% Similarity=0.351 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhcCCCccEEEE--EecccccChHHHHHHHHHHHHhcCCCCcEEEEeC
Q psy7785 340 EESIIQAFRIISSDSNVKCILV--NVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLE 395 (525)
Q Consensus 340 ~~~~~~al~~ll~dp~vd~vlv--~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~ 395 (525)
.+.+.+.++.+.+++ ++.|++ +.++|.. .-+..|.+.... .+||+++...
T Consensus 15 ~~~l~~~l~~a~~~~-~~~vvl~InSpGG~v---~~~~~i~~~l~~--~~kPvia~v~ 66 (187)
T cd07020 15 ADYLERAIDQAEEGG-ADALIIELDTPGGLL---DSTREIVQAILA--SPVPVVVYVY 66 (187)
T ss_pred HHHHHHHHHHHHhCC-CCEEEEEEECCCCCH---HHHHHHHHHHHh--CCCCEEEEEe
Confidence 345788888887665 888776 4455532 122344444454 6899997664
No 261
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.72 E-value=76 Score=32.51 Aligned_cols=64 Identities=14% Similarity=0.241 Sum_probs=46.9
Q ss_pred CcEEEEecchhHHHH-----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 302 GNIGCLVNGAGLAMA-----TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 302 ~rIaIitnsGG~gvl-----aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
..+++|-.|.=++.. -.-+|++.|+. ..-+++..+.+.+.+.+.++.+-+||+||++++..+..
T Consensus 32 P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PlP 100 (285)
T PRK14191 32 PKLAVILVGKDPASQTYVNMKIKACERVGMD-SDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPLP 100 (285)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCC
Confidence 357777666433322 23567777875 45567888888888999999999999999999976643
No 262
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=35.22 E-value=1.4e+02 Score=28.12 Aligned_cols=50 Identities=16% Similarity=0.280 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCCccEEEEE--ecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCc
Q psy7785 342 SIIQAFRIISSDSNVKCILVN--VFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGT 397 (525)
Q Consensus 342 ~~~~al~~ll~dp~vd~vlv~--~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~ 397 (525)
.+.++++...+++ ++.|++. .+||.. .-+..|.+.+.. .++|+++...|.
T Consensus 17 ~l~~~l~~a~~~~-~~~ivl~inspGG~v---~~~~~I~~~l~~--~~~pvva~V~g~ 68 (178)
T cd07021 17 FVERALKEAKEEG-ADAVVLDIDTPGGRV---DSALEIVDLILN--SPIPTIAYVNDR 68 (178)
T ss_pred HHHHHHHHHHhCC-CCeEEEEEECcCCCH---HHHHHHHHHHHh--CCCCEEEEECCc
Confidence 4688888888876 8888874 455532 224456666665 679999877664
No 263
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=34.76 E-value=6e+02 Score=27.25 Aligned_cols=91 Identities=22% Similarity=0.281 Sum_probs=50.5
Q ss_pred CCcEEEEecc----hhHHHHHHHHHHHcCC---------CCCCe----eeecCC-CCH--HHHHHHHHHHhcCC------
Q psy7785 301 DGNIGCLVNG----AGLAMATMDIIKLHGG---------EPANF----LDVGGG-VNE--ESIIQAFRIISSDS------ 354 (525)
Q Consensus 301 ~~rIaIitns----GG~gvlaaD~~~~~Gl---------~~aNP----lDl~g~-a~~--~~~~~al~~ll~dp------ 354 (525)
.++|.-|+.| +| +-|.....|+ +..|| +|+... ... +.+.+-++-+.+||
T Consensus 72 ~g~I~eV~iGat~~~G----~~~kav~iGGEtvfyrhE~~~~npp~ia~dV~D~~~~~~~~~i~~~~~dV~~dP~~wak~ 147 (389)
T TIGR00381 72 PGKIEEVVLGATKAEG----TREKTVTLGGQRALYRFEEPQPNPPVVTFDVFDIPMPGLPKPIRMHFEDVMEDPAEWARK 147 (389)
T ss_pred CceeEEEEEccccCCC----CcceeEEECCcccceecCcCCCCCCeEEEEEecCCccccHHHHHHHHHHHhcCHHHHHHH
Confidence 4677777776 33 1122233343 44566 788776 333 44555555555333
Q ss_pred -----CccEEEEEecccc-----cChHHHHHHHHHHHHhcCCCCcEEEEeCCc
Q psy7785 355 -----NVKCILVNVFGGI-----VNCATIAKGLVNACKSFKLSIPLVVRLEGT 397 (525)
Q Consensus 355 -----~vd~vlv~~~~~~-----~~~~~ia~~i~~a~~~~~~~kPivv~~~g~ 397 (525)
+.|.|.+...++. ....+.++.+-.+... .+.|++++..|+
T Consensus 148 ~V~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~a--v~vPLIL~gsg~ 198 (389)
T TIGR00381 148 CVKEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQA--VDVPIVIGGSGN 198 (389)
T ss_pred HHHHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHh--CCCCEEEeCCCC
Confidence 6788887654432 1223455555555554 689998776553
No 264
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.14 E-value=87 Score=32.12 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=46.3
Q ss_pred CcEEEEecchhHHHH-----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 302 GNIGCLVNGAGLAMA-----TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 302 ~rIaIitnsGG~gvl-----aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
.++++|-.|.=++.. -.-.|++.|+. ...+++..+.+.+.+.+.++.+-+||+||++++..+..
T Consensus 33 p~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivq~Plp 101 (286)
T PRK14175 33 PKLSVILVGNDGASQSYVRSKKKAAEKIGMI-SEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLP 101 (286)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCC
Confidence 356666665433332 23567777876 44567777888888999999999999999999976643
No 265
>TIGR01101 V_ATP_synt_F vacuolar ATP synthase F subunit. This model describes the vacuolar ATP synthase F subunit (14 kDa subunit) in eukaryotes. In some archaeal species this protein subunit is referred as G subunit
Probab=34.08 E-value=2.6e+02 Score=24.62 Aligned_cols=60 Identities=27% Similarity=0.378 Sum_probs=44.1
Q ss_pred CCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCC
Q psy7785 329 ANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEG 396 (525)
Q Consensus 329 aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g 396 (525)
.|++=+....+.+...++++.++.++++..|+++ ..+|+.|-...++++.-.|.++-..+
T Consensus 34 ~nf~~v~~~t~~eei~~~~~~~l~~~digIIlIt--------e~~a~~i~~~I~~~~~~~PaIieIP~ 93 (115)
T TIGR01101 34 PNFLVVDKNTTVSEIEDCFNRFLKRDDIAIILIN--------QHIAEMIRHAVDAHTRSIPAVLEIPS 93 (115)
T ss_pred cceeeecCCCCHHHHHHHHHHHhhcCCeEEEEEc--------HHHHHHhHHHHHhcCCcCCEEEEECC
Confidence 5787566666777899999998999999877763 56667776666665556788876555
No 266
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=33.76 E-value=3.9e+02 Score=26.87 Aligned_cols=96 Identities=15% Similarity=0.244 Sum_probs=55.5
Q ss_pred eeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc-c--Ch---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHH-
Q psy7785 331 FLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI-V--NC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGK- 403 (525)
Q Consensus 331 PlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~-~--~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~- 403 (525)
|.+--|..+.+.+.+-++.+.+. ++|++++.-..|. . .. ..+.+..++... .+.||++...+....++.
T Consensus 12 Pf~~dg~id~~~~~~~i~~l~~~-Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~---~~~~vi~gv~~~st~~~i~ 87 (289)
T PF00701_consen 12 PFNADGSIDEDALKRLIDFLIEA-GVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAA---GRVPVIAGVGANSTEEAIE 87 (289)
T ss_dssp -BETTSSB-HHHHHHHHHHHHHT-TSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHT---TSSEEEEEEESSSHHHHHH
T ss_pred CCCCCcCcCHHHHHHHHHHHHHc-CCCEEEECCCCcccccCCHHHHHHHHHHHHHHcc---CceEEEecCcchhHHHHHH
Confidence 55556777788899999998865 7999998654442 1 11 233344344332 468898876665444543
Q ss_pred --HHHhhCCC-------CccccCCHHHHHHHHHHhh
Q psy7785 404 --RILDESKL-------PLIFASDLDEAASLVNACK 430 (525)
Q Consensus 404 --~~L~~~Gv-------pvf~~~s~~~Av~Al~~l~ 430 (525)
+...+.|+ |.|...+.++.++-+....
T Consensus 88 ~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia 123 (289)
T PF00701_consen 88 LARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIA 123 (289)
T ss_dssp HHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHH
T ss_pred HHHHHhhcCceEEEEeccccccchhhHHHHHHHHHH
Confidence 34456666 5554456666555554443
No 267
>COG2232 Predicted ATP-dependent carboligase related to biotin carboxylase [General function prediction only]
Probab=33.71 E-value=1.1e+02 Score=32.03 Aligned_cols=31 Identities=3% Similarity=0.124 Sum_probs=21.8
Q ss_pred CeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 106 NKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 106 ~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
.+|+.|+|++ |.=+++++.-+.+- .-++.+.
T Consensus 176 ~~~i~Qefi~-G~p~Svs~is~g~~-a~~la~N 206 (389)
T COG2232 176 PGFIFQEFIE-GRPVSVSFISNGSD-ALTLAVN 206 (389)
T ss_pred cceehhhhcC-CceeEEEEEecCcc-eEEEEEe
Confidence 5789999997 67778888777654 3444444
No 268
>PRK12616 pyridoxal kinase; Reviewed
Probab=33.68 E-value=1.9e+02 Score=28.91 Aligned_cols=78 Identities=10% Similarity=0.078 Sum_probs=50.0
Q ss_pred cchhHHHHHHH--HHHHcCC---------CCCCeeeec----CCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHH
Q psy7785 309 NGAGLAMATMD--IIKLHGG---------EPANFLDVG----GGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATI 373 (525)
Q Consensus 309 nsGG~gvlaaD--~~~~~Gl---------~~aNPlDl~----g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~i 373 (525)
.|||+|+. +| .+..+|. .+.|+.... -..+++.+..-++.+++|-.+|+|.+...+ ..+.
T Consensus 14 ~sggaGi~-aD~~t~~~~g~~~~~~~T~~t~q~~~~~~~~~v~~~~~~~i~~ql~~l~~d~~~~aikiG~l~----s~~~ 88 (270)
T PRK12616 14 SSGGAGIQ-ADLKTFQEKNVYGMTALTVVVAMDPENSWDHQVFPIDTDTIRAQLSTIVDGIGVDAMKTGMLP----TVDI 88 (270)
T ss_pred CCchHHHH-HHHHHHHHcCCcccceeeEEeeEeCCCcceeEEEECCHHHHHHHHHHHHcCCCCCEEEECCCC----CHHH
Confidence 56778875 47 4555664 345665421 134456688899999999889999975432 3456
Q ss_pred HHHHHHHHHhcCCCCcEEE
Q psy7785 374 AKGLVNACKSFKLSIPLVV 392 (525)
Q Consensus 374 a~~i~~a~~~~~~~kPivv 392 (525)
++.+.+..+++ ..+|+++
T Consensus 89 i~~i~~~l~~~-~~~~vV~ 106 (270)
T PRK12616 89 IELAADTIKEK-QLKNVVI 106 (270)
T ss_pred HHHHHHHHHhc-CCCCEEE
Confidence 67777777763 1245654
No 269
>PF05770 Ins134_P3_kin: Inositol 1, 3, 4-trisphosphate 5/6-kinase; InterPro: IPR008656 This entry represents inositol-tetrakisphosphate 1-kinase which is also called inositol 1,3,4-trisphosphate 5/6-kinase. Inositol-tetrakisphosphate 1-kinase can phosphorylate various inositol polyphosphate such as Ins(3,4,5,6)P4 or Ins(1,3,4)P3. This enzyme phosphorylates Ins(3,4,5,6)P4 at position 1 to form Ins(1,3,4,5,6)P5. This reaction is thought to have regulatory importance, since Ins(3,4,5,6)P4 is an inhibitor of plasma membrane Ca(2+)-activated Cl(-) channels, while Ins(1,3,4,5,6)P5 is not. It also phosphorylates Ins(1,3,4)P3 on O-5 and O-6 to form Ins(1,3,4,6)P4, an essential molecule in the hexakisphosphate (InsP6) pathway [, , , , ].; GO: 0000287 magnesium ion binding, 0005524 ATP binding, 0047325 inositol tetrakisphosphate 1-kinase activity, 0052725 inositol-1,3,4-trisphosphate 6-kinase activity, 0052726 inositol-1,3,4-trisphosphate 5-kinase activity, 0032957 inositol trisphosphate metabolic process, 0005622 intracellular; PDB: 1Z2P_X 1Z2O_X 1Z2N_X 2Q7D_A 2QB5_B 2ODT_X.
Probab=33.57 E-value=57 Score=33.77 Aligned_cols=73 Identities=16% Similarity=0.213 Sum_probs=38.5
Q ss_pred hCCCCCCCccccC-CHHHHHHHH--HhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccc
Q psy7785 19 VSTVHSTDKVCLE-DARTATNIL--KDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT 95 (525)
Q Consensus 19 ~~GIpvp~~~~~~-~~eea~~~a--~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~ 95 (525)
..+|.+|+..++. +.++..+.. ..+.| |+|.|+...+|.. + +.-..+..+.+.+.+ +
T Consensus 110 ~~~i~~P~~v~i~~~~~~~~~~l~~agL~f-PlI~KPlvA~Gsa-~-------SH~Maivf~~~gL~~---------L-- 169 (307)
T PF05770_consen 110 DGRIRVPKFVVINSDAESLPELLKEAGLKF-PLICKPLVACGSA-D-------SHKMAIVFNEEGLKD---------L-- 169 (307)
T ss_dssp CTTEE-S-EEEESSSHCCHHHHHHCTTS-S-SEEEEESB-SSTS-C-------CCEEEEE-SGGGGTT------------
T ss_pred CCcccCCceEEEcCCHHHHHHHHHHCCCcc-cEEeeehhhcCCc-c-------ceEEEEEECHHHHhh---------c--
Confidence 4578889998887 433333333 35666 9999998877541 2 445666777666542 2
Q ss_pred ccCCCCCcccCeEEEEeeeCCceeE
Q psy7785 96 KQTPKTGINVNKVMVAKSVNITRET 120 (525)
Q Consensus 96 ~~~~~~g~~~~~vlVee~~~~~~E~ 120 (525)
+ ..+++|||++|+--+
T Consensus 170 -----~----~P~VlQeFVNHggvL 185 (307)
T PF05770_consen 170 -----K----PPCVLQEFVNHGGVL 185 (307)
T ss_dssp ----------SSEEEEE----TTEE
T ss_pred -----C----CCEEEEEeecCCCEE
Confidence 0 126899999886433
No 270
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.28 E-value=94 Score=31.85 Aligned_cols=63 Identities=14% Similarity=0.146 Sum_probs=44.6
Q ss_pred cEEEEecchhHHH-HH----HHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 303 NIGCLVNGAGLAM-AT----MDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 303 rIaIitnsGG~gv-la----aD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
.+++|-.|.-++. .. .-.|++.|+. .--+++..+.+.+.+.+.++.+-+|++||++++..+..
T Consensus 35 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlvqlPLP 102 (285)
T PRK10792 35 GLAVVLVGSDPASQVYVASKRKACEEVGFV-SRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLP 102 (285)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCC
Confidence 5666655533332 22 2467777775 34456777888888999999999999999999976643
No 271
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.19 E-value=91 Score=32.00 Aligned_cols=64 Identities=13% Similarity=0.108 Sum_probs=45.1
Q ss_pred CcEEEEecchhHHHH-----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 302 GNIGCLVNGAGLAMA-----TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 302 ~rIaIitnsGG~gvl-----aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
..+++|-.|.-++.. -.-+|++.|+. ..-+.+..+.+.+.+.+.++.+-+|++||++++..+..
T Consensus 39 P~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~~~~el~~~I~~LN~D~~V~GIlvqlPLP 107 (287)
T PRK14176 39 PGLATILVGDDPASKMYVRLKHKACERVGIR-AEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLPLP 107 (287)
T ss_pred CeEEEEEECCCcchHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCC
Confidence 356666555333222 23567777875 33456777888888999999999999999999976643
No 272
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.16 E-value=97 Score=31.77 Aligned_cols=64 Identities=9% Similarity=0.098 Sum_probs=47.0
Q ss_pred CcEEEEecchhHHHH-----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 302 GNIGCLVNGAGLAMA-----TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 302 ~rIaIitnsGG~gvl-----aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
..+++|-.|.-++.. -.-+|++.|+.. --+.+..+.+.+.+.+.++.+-+|++||+++|..+..
T Consensus 32 P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~-~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP 100 (286)
T PRK14184 32 PGLAVILVGEDPASQVYVRNKERACEDAGIVS-EAFRLPADTTQEELEDLIAELNARPDIDGILLQLPLP 100 (286)
T ss_pred CEEEEEEeCCChhHHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHHHHHHHHHHhCCCcCceEEEecCCC
Confidence 467776666444432 235788888863 3456777888888999999999999999999976643
No 273
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=32.06 E-value=5.5e+02 Score=25.97 Aligned_cols=99 Identities=13% Similarity=0.228 Sum_probs=59.2
Q ss_pred CCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHHH
Q psy7785 329 ANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQEG 402 (525)
Q Consensus 329 aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~ 402 (525)
--|.|=-|..+.+.+.+.++.+.+..++++++++-..|. ... ..+.+..++... .+.||++..+.....++
T Consensus 12 ~TPf~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~---~~~~viagvg~~~t~~a 88 (293)
T PRK04147 12 LTPFDEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAK---GKVKLIAQVGSVNTAEA 88 (293)
T ss_pred ECcCCCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhC---CCCCEEecCCCCCHHHH
Confidence 356666788888999999999987678999998654442 111 233333333332 35788876655444444
Q ss_pred H---HHHhhCCC-------CccccCCHHHHHHHHHHhh
Q psy7785 403 K---RILDESKL-------PLIFASDLDEAASLVNACK 430 (525)
Q Consensus 403 ~---~~L~~~Gv-------pvf~~~s~~~Av~Al~~l~ 430 (525)
. +...+.|+ |.|...+.++-++.+....
T Consensus 89 i~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va 126 (293)
T PRK04147 89 QELAKYATELGYDAISAVTPFYYPFSFEEICDYYREII 126 (293)
T ss_pred HHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHH
Confidence 3 34566777 6664344444444444443
No 274
>PF14397 ATPgrasp_ST: Sugar-transfer associated ATP-grasp
Probab=31.98 E-value=1.1e+02 Score=31.21 Aligned_cols=184 Identities=13% Similarity=0.150 Sum_probs=91.5
Q ss_pred hCCCCCCCccc-----------cCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeC-Cc-----ccH
Q psy7785 19 VSTVHSTDKVC-----------LEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTN-NV-----QDI 81 (525)
Q Consensus 19 ~~GIpvp~~~~-----------~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~-~~-----eea 81 (525)
.+|||+|+..+ ..+.++..+......-.++|+|+..-.+ || ||.+.. .. ...
T Consensus 36 ~~gi~vP~~i~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~viKP~~G~~--G~---------Gi~~i~~~~~~~~~~~~ 104 (285)
T PF14397_consen 36 DYGIPVPEAIFNVGRDYFDLREQHSIEDLEEFLRKHAPDRFVIKPANGSG--GK---------GILVIDRRDGSEINRDI 104 (285)
T ss_pred HhcCCCCceEEeccceEEecccccCHHHHHHHHHhccCCcEEEEeCCCCC--cc---------CEEEEEeecCcccccch
Confidence 79999999322 2356777777777621389999964333 44 444432 11 112
Q ss_pred HHHHHHHhccccccccCCCCCcccCeEEEEeeeCCc-----------eeEEEEEEEcCCCCcc-----EEEecCCCCccc
Q psy7785 82 PPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNIT-----------RETYFCIVQDRLHNGP-----VVIISPSGGTDI 145 (525)
Q Consensus 82 ~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~-----------~E~~vgv~~D~~f~gp-----vi~~g~~GGv~i 145 (525)
......+.. . .+ ..++|||++... .-+.+-..+|+ . .| ++-+| .+|..+
T Consensus 105 ~~~~~~~~~--~-------~~---~~~liqe~i~qh~~~~~~~~~svnTiRvvT~~~~-~-~~~~~~a~lRlg-~~~~~~ 169 (285)
T PF14397_consen 105 SALYAGLES--L-------GG---KDYLIQERIEQHPELAALSPSSVNTIRVVTFLDD-G-EVEVLMAMLRLG-RGGSGV 169 (285)
T ss_pred hHHHHHHHh--c-------CC---ccEEEEecccCCHHHHhhCCCCCCcEEEEEEEeC-C-eeEEEEEEEEeC-CCCCcc
Confidence 211121111 0 01 178999988422 22334444565 2 33 34466 677777
Q ss_pred ccccccCCCeEEEEecCCCCCCCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHH
Q psy7785 146 ENVAAKTPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATE 225 (525)
Q Consensus 146 E~~~~~~~~~~~~~~l~p~~~l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~ 225 (525)
.++.. --..++||...|+.... ....-+ . .+ -.++--| ..+.|+.=.+.+++.++
T Consensus 170 DN~~~----Ggi~~~ID~~tGl~~~~---~~~~~~---~-------~~--~~HPdTg------~~~~g~~IP~w~~~~~l 224 (285)
T PF14397_consen 170 DNFHQ----GGIGVGIDLATGLGRFA---GYDQDG---E-------RY--EHHPDTG------APFSGFQIPNWDEILEL 224 (285)
T ss_pred cccCC----CCEEEEEecCCCccccc---cccCCC---C-------Ee--eeCCCCC------CccCCccCCCHHHHHHH
Confidence 77753 12346777655543321 000000 0 00 0000000 12333333467888888
Q ss_pred HHHHHHHHhcCCCceeeeeceeEecCCcEEEe
Q psy7785 226 VQKLWNLFLSVDATQLEINPLVETDEREVISV 257 (525)
Q Consensus 226 l~~l~~l~~~~~~~~leiNPl~v~~~g~~~al 257 (525)
+.+..+.|......--| ++++++| ++.+
T Consensus 225 ~~~~~~~~p~~~~iGWD---vait~~G-p~ll 252 (285)
T PF14397_consen 225 AKEAHRKFPGLGYIGWD---VAITEDG-PVLL 252 (285)
T ss_pred HHHHHHHCCCCCeEEEE---EEEcCCC-cEEE
Confidence 88888777665544444 3566666 4443
No 275
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=31.92 E-value=3.1e+02 Score=28.72 Aligned_cols=110 Identities=18% Similarity=0.250 Sum_probs=66.4
Q ss_pred ChHHHHHHHHHHHHhcCCCCcEEEEeCCc---chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCC
Q psy7785 369 NCATIAKGLVNACKSFKLSIPLVVRLEGT---NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGT 445 (525)
Q Consensus 369 ~~~~ia~~i~~a~~~~~~~kPivv~~~g~---~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~ 445 (525)
+.++..+-+.+.+++ ++.-++ +.+. --...+..+.+.|+-+..+.+. +.+.-+-
T Consensus 50 ~~~~yv~~~l~~C~~--~~Idv~--~P~~~~~~l~~~r~~F~a~Gv~l~~~~~~-~~l~~~~------------------ 106 (329)
T PF15632_consen 50 DGEEYVDWCLDFCKE--HGIDVF--VPGRNRELLAAHRDEFEALGVKLLTASSA-ETLELAD------------------ 106 (329)
T ss_pred CHHHHHHHHHHHHHH--hCCeEE--EcCccHHHHHHHHHHHHHhCCEEEecCCH-HHHHHHh------------------
Confidence 345666666777776 333333 2332 1233456778888887732222 2222221
Q ss_pred CHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcC-CCCcEEEEEecCChHHHHHhhhh
Q psy7785 446 NVQEGKRILDESKLPL---IFASDLDEAASLVNACKSFK-LSIPLVVRLEGTNVQEGKRILDE 504 (525)
Q Consensus 446 ~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~-~G~PVVlKi~~~~~~~~~~~~~~ 504 (525)
+-....+.+++.|||+ ..++|.+|..++ .++++ .|.|+.+|=...+--.|=++|++
T Consensus 107 dK~~~y~~~~~~~ipvp~~~~v~t~~el~~a---~~~l~~~~~~~CvKP~~g~gg~GFr~l~~ 166 (329)
T PF15632_consen 107 DKAAFYEFMEANGIPVPPYWRVRTADELKAA---YEELRFPGQPLCVKPAVGIGGRGFRVLDE 166 (329)
T ss_pred hHHHHHHHHHhCCCCCCCEEEeCCHHHHHHH---HHhcCCCCceEEEecccCCCcceEEEEcc
Confidence 1224556777889999 889999998874 33432 36669999887777777777764
No 276
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.89 E-value=99 Score=31.68 Aligned_cols=64 Identities=13% Similarity=0.122 Sum_probs=46.5
Q ss_pred CcEEEEecchhHHHH-----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 302 GNIGCLVNGAGLAMA-----TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 302 ~rIaIitnsGG~gvl-----aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
..+++|-.|.-++.. -.-+|++.|+. .--+.+..+.+.+.+.+.++.+-+|++||++++..+..
T Consensus 33 p~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp 101 (285)
T PRK14189 33 PGLAVILVGDNPASQVYVRNKVKACEDNGFH-SLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLP 101 (285)
T ss_pred CeEEEEEeCCCchHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCC
Confidence 367776666444332 23567777875 33456778888889999999999999999999976643
No 277
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=31.78 E-value=1.5e+02 Score=29.65 Aligned_cols=65 Identities=23% Similarity=0.249 Sum_probs=42.7
Q ss_pred HHHHHHcCCCCCCeeeecCCCCHHH-HHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcC-CCCc
Q psy7785 318 MDIIKLHGGEPANFLDVGGGVNEES-IIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFK-LSIP 389 (525)
Q Consensus 318 aD~~~~~Gl~~aNPlDl~g~a~~~~-~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~-~~kP 389 (525)
.|++.++|++.....-..++.+.+. +..+-+.+...|++|+++.. .+.+|.++.+++++.+ .+.|
T Consensus 142 ~~Al~~~Gl~~~~~~i~~~~~~~~~g~~~~~~ll~~~p~idai~~~-------nd~~A~ga~~~l~~~gr~~ip 208 (279)
T PF00532_consen 142 RDALKEAGLPIDEEWIFEGDFDYESGYEAARELLESHPDIDAIFCA-------NDMMAIGAIRALRERGRLKIP 208 (279)
T ss_dssp HHHHHHTTSCEEEEEEEESSSSHHHHHHHHHHHHHTSTT-SEEEES-------SHHHHHHHHHHHHHTT-TCTT
T ss_pred HHHHHHcCCCCCcccccccCCCHHHHHHHHHHHHhhCCCCEEEEEe-------CHHHHHHHHHHHHHcCCcccC
Confidence 4888999995433333467766665 54455556667899988842 3678889888888754 3445
No 278
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.52 E-value=1e+02 Score=31.63 Aligned_cols=63 Identities=14% Similarity=0.220 Sum_probs=45.6
Q ss_pred CcEEEEecchhHHH-----HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecc
Q psy7785 302 GNIGCLVNGAGLAM-----ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFG 365 (525)
Q Consensus 302 ~rIaIitnsGG~gv-----laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~ 365 (525)
..+++|-.|.-++. ...-.|++.|+. ..-+++..+.+.+.+.+.++.+-+|++||++++..+.
T Consensus 33 P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PL 100 (284)
T PRK14190 33 PGLAVILVGDDPASHSYVRGKKKAAEKVGIY-SELYEFPADITEEELLALIDRLNADPRINGILVQLPL 100 (284)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCC
Confidence 35666655433332 223567777876 3456778888888899999999999999999997664
No 279
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.67 E-value=1.1e+02 Score=31.33 Aligned_cols=63 Identities=13% Similarity=0.170 Sum_probs=44.4
Q ss_pred cEEEEecchhHHHH-----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 303 NIGCLVNGAGLAMA-----TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 303 rIaIitnsGG~gvl-----aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
.+++|-.|-=++.. -.-.|++.|+. .--+++..+.+.+.+.+.++.+-+||+||++++..+..
T Consensus 32 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIivq~PLP 99 (282)
T PRK14166 32 CLAVILVGDNPASQTYVKSKAKACEECGIK-SLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLP 99 (282)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCC
Confidence 56665555333222 23567777775 34456777888888999999999999999999976643
No 280
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.33 E-value=1.1e+02 Score=31.57 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=45.6
Q ss_pred CcEEEEecchhHHH-----HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 302 GNIGCLVNGAGLAM-----ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 302 ~rIaIitnsGG~gv-----laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
..+++|-.|-=++. .-.-+|++.|+. ..-+.+..+.+.+.+.+.++.+-+|++||++++..+..
T Consensus 33 P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~~e~~l~~~I~~lN~d~~V~GIlvqlPLP 101 (294)
T PRK14187 33 PCLIVILVGDDPASQLYVRNKQRKAEMLGLR-SETILLPSTISESSLIEKINELNNDDSVHGILVQLPVP 101 (294)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCC
Confidence 35666665533322 223577888875 33456777888888999999999999999999976643
No 281
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.14 E-value=1.1e+02 Score=31.48 Aligned_cols=63 Identities=13% Similarity=0.124 Sum_probs=47.3
Q ss_pred CcEEEEecchhHHHH-----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecc
Q psy7785 302 GNIGCLVNGAGLAMA-----TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFG 365 (525)
Q Consensus 302 ~rIaIitnsGG~gvl-----aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~ 365 (525)
..+++|-.|.-++.. -.-.|++.|+. ..-+.+..+.+.+.+.+.++.+-+|++||+++|..+.
T Consensus 33 P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivqlPl 100 (284)
T PRK14179 33 PGLVVILVGDNPASQVYVRNKERSALAAGFK-SEVVRLPETISQEELLDLIERYNQDPTWHGILVQLPL 100 (284)
T ss_pred ceEEEEEeCCChhHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCC
Confidence 367777766544432 23678888876 3356778888888899999999999999999997654
No 282
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.98 E-value=1.1e+02 Score=31.34 Aligned_cols=63 Identities=16% Similarity=0.212 Sum_probs=45.8
Q ss_pred CcEEEEecchhHHHH-----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecc
Q psy7785 302 GNIGCLVNGAGLAMA-----TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFG 365 (525)
Q Consensus 302 ~rIaIitnsGG~gvl-----aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~ 365 (525)
.++++|-.|.=++.. -.-+|++.|+. ...+++..+.+.+.+.+.++.+-+|++||++++..+.
T Consensus 32 P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~Pl 99 (282)
T PRK14180 32 PKLVAIIVGNDPASKTYVASKEKACAQVGID-SQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPL 99 (282)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCC
Confidence 356666665433332 23567888876 3455677778888899999999999999999997654
No 283
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.96 E-value=1.1e+02 Score=31.36 Aligned_cols=64 Identities=16% Similarity=0.230 Sum_probs=45.2
Q ss_pred CcEEEEecchhHHH-----HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 302 GNIGCLVNGAGLAM-----ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 302 ~rIaIitnsGG~gv-----laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
..+++|-.|-=++. .-.-.|++.|+. ..-+++..+.+.+.+.+.++.+-+|++||++++..+..
T Consensus 32 P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivqlPlP 100 (284)
T PRK14170 32 PGLAVVLVGDNQASRTYVRNKQKRTEEAGMK-SVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLP 100 (284)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCC
Confidence 35666665533322 223567777875 33456777888888999999999999999999976643
No 284
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.82 E-value=1.1e+02 Score=31.45 Aligned_cols=63 Identities=14% Similarity=0.234 Sum_probs=45.8
Q ss_pred CcEEEEecchhHHHH-----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecc
Q psy7785 302 GNIGCLVNGAGLAMA-----TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFG 365 (525)
Q Consensus 302 ~rIaIitnsGG~gvl-----aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~ 365 (525)
..+++|-.|-=++.. -.-+|++.|+.. --+++..+.+.+.+.+.++.+-+|++||++++..+.
T Consensus 32 P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~-~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPL 99 (293)
T PRK14185 32 PHLAAILVGHDGGSETYVANKVKACEECGFKS-SLIRYESDVTEEELLAKVRELNQDDDVDGFIVQLPL 99 (293)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCC
Confidence 456666665433332 235777888753 346777888888899999999999999999997664
No 285
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.72 E-value=1.1e+02 Score=31.53 Aligned_cols=64 Identities=17% Similarity=0.226 Sum_probs=45.9
Q ss_pred CcEEEEecchhHHHH-----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 302 GNIGCLVNGAGLAMA-----TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 302 ~rIaIitnsGG~gvl-----aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
..+++|-.|-=++.. -.-+|++.|+. ...+++..+.+.+.+.+.++.+-+|++||++++..+..
T Consensus 32 P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~Plp 100 (295)
T PRK14174 32 PGLTVIIVGEDPASQVYVRNKAKSCKEIGMN-STVIELPADTTEEHLLKKIEDLNNDPDVHGILVQQPLP 100 (295)
T ss_pred CeEEEEEeCCChHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCC
Confidence 356666555333222 23567778876 34567778888888999999999999999999976643
No 286
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.26 E-value=1.2e+02 Score=30.95 Aligned_cols=64 Identities=13% Similarity=0.156 Sum_probs=45.2
Q ss_pred CcEEEEecchhHHHH-----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 302 GNIGCLVNGAGLAMA-----TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 302 ~rIaIitnsGG~gvl-----aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
.++++|-.|.=++.. -.-.|++.|+. .--+++..+.+.+.+.+.++.+-+|++||++++..+..
T Consensus 31 P~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp 99 (282)
T PRK14169 31 PTLAVVLVGSDPASEVYVRNKQRRAEDIGVR-SLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLPLP 99 (282)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCC
Confidence 356666655433322 22467777875 33456777888888999999999999999999976643
No 287
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=29.15 E-value=3.5e+02 Score=27.13 Aligned_cols=71 Identities=15% Similarity=0.193 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHHhhCCCCcc
Q psy7785 338 VNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLI 414 (525)
Q Consensus 338 a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf 414 (525)
..++...++...++++=+.|-+++..+.+..+...-|+.+ .++ .++|.++..-+.. ......|.+.|+.++
T Consensus 43 m~pe~~~~~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~---l~~--~~iP~IvI~D~p~-~K~~d~l~~~g~GYI 113 (277)
T PRK00994 43 MGPEEVEEVVKKMLEEWKPDFVIVISPNPAAPGPKKAREI---LKA--AGIPCIVIGDAPG-KKVKDAMEEQGLGYI 113 (277)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCchHHHHH---HHh--cCCCEEEEcCCCc-cchHHHHHhcCCcEE
Confidence 4456666677777665556666665554433334444433 233 4678777655542 112266777777655
No 288
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.68 E-value=1.2e+02 Score=31.37 Aligned_cols=64 Identities=14% Similarity=0.104 Sum_probs=46.5
Q ss_pred CcEEEEecchhHHH-----HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 302 GNIGCLVNGAGLAM-----ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 302 ~rIaIitnsGG~gv-----laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
..+++|-.|.=++. ...-+|++.|+.. --+++..+.+.+.+.+.++.+-+|++||++++..+..
T Consensus 34 P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~-~~~~l~~~~t~~el~~~I~~lN~D~~V~GIivqlPlP 102 (297)
T PRK14168 34 PGLVTILVGESPASLSYVTLKIKTAHRLGFHE-IQDNQSVDITEEELLALIDKYNNDDSIHGILVQLPLP 102 (297)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCC
Confidence 35666666544333 2335788888763 3456777888888999999999999999999976643
No 289
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.58 E-value=1.2e+02 Score=31.10 Aligned_cols=64 Identities=11% Similarity=0.059 Sum_probs=46.0
Q ss_pred CcEEEEecchhHHHH-----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 302 GNIGCLVNGAGLAMA-----TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 302 ~rIaIitnsGG~gvl-----aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
..+++|-.|-=++.. -.-.|++.|+. ..-+++..+.+.+.+.+.++.+-+|++||++++..+..
T Consensus 33 P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIlvqlPlP 101 (284)
T PRK14193 33 PGLGTVLVGDDPGSQAYVRGKHRDCAEVGIT-SIRRDLPADATQEELNAVIDELNADPACTGYIVQLPLP 101 (284)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCC
Confidence 367766655433322 23567777875 34456778888888999999999999999999976643
No 290
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.49 E-value=1.2e+02 Score=31.24 Aligned_cols=63 Identities=11% Similarity=0.193 Sum_probs=43.9
Q ss_pred cEEEEecchhHHH-----HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 303 NIGCLVNGAGLAM-----ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 303 rIaIitnsGG~gv-----laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
.+++|-.|-=++. .-.-.|++.|+.. .-+.+..+.+.+.+.+.++.+-+|++||++++..+..
T Consensus 34 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~-~~~~l~~~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP 101 (288)
T PRK14171 34 KLAIVLVGDNPASIIYVKNKIKNAHKIGIDT-LLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLP 101 (288)
T ss_pred eEEEEEeCCCccHHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCC
Confidence 4555555432222 2235677778752 3456777888888999999999999999999976643
No 291
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.33 E-value=1.2e+02 Score=31.39 Aligned_cols=64 Identities=16% Similarity=0.120 Sum_probs=46.2
Q ss_pred CcEEEEecchhHHHH-----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 302 GNIGCLVNGAGLAMA-----TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 302 ~rIaIitnsGG~gvl-----aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
.++++|-.|--++.. ..-+|++.|+. ..-+++..+.+.+.+.+.++.+-+|++||++++..+..
T Consensus 32 P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP 100 (297)
T PRK14167 32 PGLATVLMSDDPASETYVSMKQRDCEEVGIE-AIDVEIDPDAPAEELYDTIDELNADEDVHGILVQMPVP 100 (297)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCC
Confidence 367776665443322 23467777875 33467778888888999999999999999999976543
No 292
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=27.87 E-value=1.3e+02 Score=31.12 Aligned_cols=63 Identities=14% Similarity=0.169 Sum_probs=43.4
Q ss_pred cEEEEecchhHHH-----HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 303 NIGCLVNGAGLAM-----ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 303 rIaIitnsGG~gv-----laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
.+++|-.|.=++. .-.-.|++.|+. .--+++..+.+.+.+.+.++.+-+||+||+++|..+..
T Consensus 41 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvq~PlP 108 (299)
T PLN02516 41 GLAVVIVGSRKDSQTYVNMKRKACAEVGIK-SFDVDLPENISEAELISKVHELNANPDVHGILVQLPLP 108 (299)
T ss_pred eEEEEEECCChhHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCC
Confidence 5666555532222 122457777875 23345677788888999999999999999999976643
No 293
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=27.73 E-value=4.4e+02 Score=25.22 Aligned_cols=77 Identities=14% Similarity=0.161 Sum_probs=42.6
Q ss_pred CcEEEEecchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHH-HhcCCCccEEEEEecccccChHHHH
Q psy7785 302 GNIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRI-ISSDSNVKCILVNVFGGIVNCATIA 374 (525)
Q Consensus 302 ~rIaIitnsGG~gv------laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~-ll~dp~vd~vlv~~~~~~~~~~~ia 374 (525)
++|++++...+... -..|.+.++|....+..-..+..+.+...+.+.. +.+.+++|+++.. .+..+
T Consensus 123 ~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a 195 (270)
T cd06294 123 KKIAFVGGDLDLEVTQDRLQGYKQALEDHGIPDRNEVIISLDFSEEGGYKALKKLLEQHPRPTAIVAT-------DDLLA 195 (270)
T ss_pred ccEEEecCCcccHHHHHHHHHHHHHHHHcCCCCCcceEEecCCchHHHHHHHHHHHhCCCCCCEEEEC-------ChHHH
Confidence 58999975444221 1136677777644333333444444444444444 4456779988852 23456
Q ss_pred HHHHHHHHhcC
Q psy7785 375 KGLVNACKSFK 385 (525)
Q Consensus 375 ~~i~~a~~~~~ 385 (525)
.++..++++.+
T Consensus 196 ~g~~~al~~~g 206 (270)
T cd06294 196 LGVLKVLNELG 206 (270)
T ss_pred HHHHHHHHHcC
Confidence 67777777643
No 294
>PRK11579 putative oxidoreductase; Provisional
Probab=27.57 E-value=1.4e+02 Score=31.07 Aligned_cols=63 Identities=13% Similarity=0.070 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEe-CCcchHHHHH---HHhhCCCCcc
Q psy7785 344 IQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRL-EGTNVQEGKR---ILDESKLPLI 414 (525)
Q Consensus 344 ~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~-~g~~~~~~~~---~L~~~Gvpvf 414 (525)
+.-++.+++++++|+|+|..+.. .-++-+..+++ .+|+|++=- +.....++.+ .-++.|+.++
T Consensus 53 ~~~~~ell~~~~vD~V~I~tp~~-----~H~~~~~~al~---aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~ 119 (346)
T PRK11579 53 VSEPQHLFNDPNIDLIVIPTPND-----THFPLAKAALE---AGKHVVVDKPFTVTLSQARELDALAKSAGRVLS 119 (346)
T ss_pred eCCHHHHhcCCCCCEEEEcCCcH-----HHHHHHHHHHH---CCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEE
Confidence 34567788999999999754421 22233333443 356666532 2223344433 3356777654
No 295
>cd00114 LIGANc NAD+ dependent DNA ligase adenylation domain. DNA ligases catalyze the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor, but using the same basic reaction mechanism. The enzyme reacts with the cofactor to form a phosphoamide-linked AMP with the amino group of a conserved Lysine in the KXDG motif, and subsequently transfers it to the DNA substrate to yield adenylated DNA. This alignment contains members of the NAD+ dependent subfamily only.
Probab=27.39 E-value=1.5e+02 Score=30.74 Aligned_cols=56 Identities=16% Similarity=0.302 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHCCCCe----EEEcChhHHHHHHHHhhhcC--CCCc---EEEEEecCChHHHHH
Q psy7785 445 TNVQEGKRILDESKLPL----IFASDLDEAASLVNACKSFK--LSIP---LVVRLEGTNVQEGKR 500 (525)
Q Consensus 445 ~~e~eak~LL~ayGIpv----~lA~s~deAv~~~~aa~~~~--~G~P---VVlKi~~~~~~~~~~ 500 (525)
.+..+..+.|+..|+++ ..+.+.+|+.+..+...+.+ ..|| +|+|+.+-...+..-
T Consensus 227 ~t~~e~l~~L~~~GF~v~~~~~~~~~~~ev~~~~~~~~~~R~~l~y~iDGiViKvn~~~~~~~lG 291 (307)
T cd00114 227 KTQSEALAFLKEWGFPVSPETRLCKNIEEVLAFYDEIEAKRDSLPYEIDGVVVKVDDLALQRELG 291 (307)
T ss_pred CCHHHHHHHHHHCCCCCCCCeEEeCCHHHHHHHHHHHHHhhhcCCCCCCcEEEEEeCHHHHHHhC
Confidence 46778999999999999 78889999988766553333 3676 999997766555443
No 296
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.37 E-value=1.2e+02 Score=31.29 Aligned_cols=63 Identities=11% Similarity=0.095 Sum_probs=44.3
Q ss_pred CcEEEEecchhHHH-----HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecc
Q psy7785 302 GNIGCLVNGAGLAM-----ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFG 365 (525)
Q Consensus 302 ~rIaIitnsGG~gv-----laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~ 365 (525)
..+++|-.|.=++. .-.-+|++.|+.. --+.+..+.+.+.+.+.++.+-+||+||+++|..+.
T Consensus 34 P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~-~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIlvqlPL 101 (301)
T PRK14194 34 PALAVILVGNDPASQVYVRNKILRAEEAGIRS-LEHRLPADTSQARLLALIAELNADPSVNGILLQLPL 101 (301)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCC
Confidence 35666655533332 2235777888752 234567778888899999999999999999997664
No 297
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.19 E-value=1.3e+02 Score=30.76 Aligned_cols=64 Identities=14% Similarity=0.208 Sum_probs=45.2
Q ss_pred CcEEEEecchhHHH-----HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 302 GNIGCLVNGAGLAM-----ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 302 ~rIaIitnsGG~gv-----laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
.++++|-.|-=++. .-.-+|++.|+. .--+.+..+.+.+.+.+.++.+-+|++||+++|..+..
T Consensus 27 P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp 95 (279)
T PRK14178 27 PRLATVIVGDDPASQMYVRMKHRACERVGIG-SVGIELPGDATTRTVLERIRRLNEDPDINGILVQLPLP 95 (279)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCC
Confidence 35666665533332 223577888875 23345677778888999999999999999999976643
No 298
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.15 E-value=1.3e+02 Score=30.83 Aligned_cols=64 Identities=13% Similarity=0.176 Sum_probs=44.7
Q ss_pred CcEEEEecchhHHHH-----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 302 GNIGCLVNGAGLAMA-----TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 302 ~rIaIitnsGG~gvl-----aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
..+++|-.|.=++.. -.-+|++.|+.. --+.+..+.+.+.+.+.++.+-+||+||++++..+..
T Consensus 32 P~Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~-~~~~l~~~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP 100 (281)
T PRK14183 32 PGLAVILVGDDPASHTYVKMKAKACDRVGIYS-ITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLP 100 (281)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHHHHHHHHHHhCCCccCeEEEeCCCC
Confidence 356666655333222 234677778753 2346677778888999999999999999999976643
No 299
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.08 E-value=1.2e+02 Score=31.01 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=44.7
Q ss_pred CcEEEEecchhHHH-----HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecc
Q psy7785 302 GNIGCLVNGAGLAM-----ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFG 365 (525)
Q Consensus 302 ~rIaIitnsGG~gv-----laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~ 365 (525)
.++++|-.|-=++. .-.-+|++.|+. .--+++..+.+.+.+.+.++.+-+|++||+++|..+.
T Consensus 27 P~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~t~~el~~~I~~lN~d~~V~GIlvqlPl 94 (287)
T PRK14181 27 PGLAVVLIGNDPASEVYVGMKVKKATDLGMV-SKAHRLPSDATLSDILKLIHRLNNDPNIHGILVQLPL 94 (287)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCC
Confidence 35666655533322 223577778875 3345677777888899999999999999999997654
No 300
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.06 E-value=1.3e+02 Score=30.70 Aligned_cols=63 Identities=14% Similarity=0.074 Sum_probs=45.8
Q ss_pred CcEEEEecchhHHHH-----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecc
Q psy7785 302 GNIGCLVNGAGLAMA-----TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFG 365 (525)
Q Consensus 302 ~rIaIitnsGG~gvl-----aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~ 365 (525)
.++++|-.|.=++.. -.-+|++.|+. ..-+.+..+.+.+.+.+.++.+-+|++||+++|..+.
T Consensus 31 P~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~t~~~l~~~I~~lN~d~~V~GIivqlPL 98 (282)
T PRK14182 31 TGLTVVRVGDDPASAIYVRGKRKDCEEVGIT-SVEHHLPATTTQAELLALIARLNADPAVHGILVQLPL 98 (282)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCC
Confidence 467777666444332 23577888875 3345667777888899999999999999999997664
No 301
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=27.06 E-value=1.3e+02 Score=31.70 Aligned_cols=63 Identities=16% Similarity=0.213 Sum_probs=44.0
Q ss_pred cEEEEecchhHHHH-H----HHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 303 NIGCLVNGAGLAMA-T----MDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 303 rIaIitnsGG~gvl-a----aD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
.+++|-.|.=++.. . .-+|++.|+.. --+++..+.+.+.+.+.++.+-+|++||+|+|..+..
T Consensus 88 ~LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~-~~~~l~~~~te~ell~~I~~lN~D~~V~GIlVQlPLP 155 (345)
T PLN02897 88 GLAVVLVGQQRDSQTYVRNKIKACEETGIKS-LLAELPEDCTEGQILSALRKFNEDTSIHGILVQLPLP 155 (345)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHhcCCEE-EEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCC
Confidence 56665555333222 2 24677778753 2356677788888999999999999999999976643
No 302
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=26.90 E-value=63 Score=31.84 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=21.2
Q ss_pred CCcEEEEecc---hhHHHHHHHHHHHcCC
Q psy7785 301 DGNIGCLVNG---AGLAMATMDIIKLHGG 326 (525)
Q Consensus 301 ~~rIaIitns---GG~gvlaaD~~~~~Gl 326 (525)
.|+|.+|..| ||++++++=.+-..|.
T Consensus 8 ~g~vl~i~Gs~~~~GA~~la~~~a~~~G~ 36 (254)
T cd01171 8 RGRVLVIGGSRGYTGAAYLAALAALRAGA 36 (254)
T ss_pred CCeEEEEeCCCCCccHHHHHHHHHHHHcc
Confidence 3688888875 7999999888888775
No 303
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.88 E-value=1.3e+02 Score=30.83 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=45.6
Q ss_pred CcEEEEecchhHHH-----HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 302 GNIGCLVNGAGLAM-----ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 302 ~rIaIitnsGG~gv-----laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
..+++|..|.-++. .-.-.|++.|+. .--+.+..+.+.+.+.+.++.+-+|++||++++..+..
T Consensus 34 P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvqlPLp 102 (284)
T PRK14177 34 PKLATILVGNNPASETYVSMKVKACHKVGMG-SEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVP 102 (284)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCC
Confidence 35777766644433 224577888875 23345567778888999999999999999999976643
No 304
>PRK02228 V-type ATP synthase subunit F; Provisional
Probab=26.62 E-value=4e+02 Score=22.60 Aligned_cols=52 Identities=19% Similarity=0.266 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCc
Q psy7785 340 EESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGT 397 (525)
Q Consensus 340 ~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~ 397 (525)
.+...++++.+++++++..+++.-- -...+.+.+.+...+ ..+|+++...+.
T Consensus 29 ~ee~~~~l~~l~~~~d~gII~Ite~----~~~~i~e~i~~~~~~--~~~P~ii~IP~~ 80 (100)
T PRK02228 29 DEKLDEAVEEVLEDDDVGILVMHDD----DLEKLPRRLRRTLEE--SVEPTVVTLGGG 80 (100)
T ss_pred HHHHHHHHHHHhhCCCEEEEEEehh----HhHhhHHHHHHHHhc--CCCCEEEEECCC
Confidence 4668999999988999987776411 012334444444444 679999877664
No 305
>TIGR02291 rimK_rel_E_lig alpha-L-glutamate ligase-related protein. Members of this protein family contain a region of homology to the RimK family of alpha-L-glutamate ligases (TIGR00768), various members of which modify the Glu-Glu C-terminus of ribosomal protein S6, or tetrahydromethanopterin, or a form of coenzyme F420 derivative. Members of this family are found so far in various Vibrio and Pseudomonas species and some other gamma and beta Proteobacteria. The function is unknown.
Probab=26.45 E-value=1.3e+02 Score=31.36 Aligned_cols=52 Identities=8% Similarity=0.047 Sum_probs=34.0
Q ss_pred HHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCC-cEEEEEecCChHHHHHhhh
Q psy7785 449 EGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSI-PLVVRLEGTNVQEGKRILD 503 (525)
Q Consensus 449 eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~-PVVlKi~~~~~~~~~~~~~ 503 (525)
....+|+++|||+ ..+.+.+.+.+. +.++-.++ |||+|-.....=.|...+.
T Consensus 40 ~t~~lL~~aglpvP~T~~~~s~~~~~~~---l~~~~~~~~~VVVKPl~Gs~GrGI~~i~ 95 (317)
T TIGR02291 40 KTKIIAQAAGITVPELYGVIHNQAEVKT---IHNIVKDHPDFVIKPAQGSGGKGILVIT 95 (317)
T ss_pred HHHHHHHHcCCCCCCEEEecCchhhHHH---HHHHHccCCCEEEEECCCCCccCeEEEE
Confidence 5789999999999 566666655442 22210156 6999987776655554443
No 306
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.41 E-value=1.3e+02 Score=30.70 Aligned_cols=63 Identities=16% Similarity=0.239 Sum_probs=45.1
Q ss_pred cEEEEecchhHHHH-----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 303 NIGCLVNGAGLAMA-----TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 303 rIaIitnsGG~gvl-----aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
.+++|-.|--++.. -.-+|++.|+. .--+.+..+.+.+.+.+.++.+-+|++||++++..+..
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~d~~V~GIlvqlPLP 101 (278)
T PRK14172 34 KIASILVGNDGGSIYYMNNQEKVANSLGID-FKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLP 101 (278)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCC
Confidence 56666655433332 23577778875 33456777888888999999999999999999976643
No 307
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=26.13 E-value=3e+02 Score=26.39 Aligned_cols=78 Identities=17% Similarity=0.127 Sum_probs=43.6
Q ss_pred CcEEEEecchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhc-CCCccEEEEEecccccChHHHH
Q psy7785 302 GNIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISS-DSNVKCILVNVFGGIVNCATIA 374 (525)
Q Consensus 302 ~rIaIitnsGG~gv------laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~-dp~vd~vlv~~~~~~~~~~~ia 374 (525)
++|++++...+... -..+.+..+|.+........+..+.+...+.++.+++ .|.++++++. .+.++
T Consensus 118 ~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a 190 (269)
T cd06275 118 RRIGCITGPLEKAPAQQRLAGFRRAMAEAGLPVNPGWIVEGDFECEGGYEAMQRLLAQPKRPTAVFCG-------NDLMA 190 (269)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCHHHhccCCCChHHHHHHHHHHHcCCCCCcEEEEC-------ChHHH
Confidence 47888764332111 1245667777664332333455554444445555554 4678888852 35667
Q ss_pred HHHHHHHHhcCC
Q psy7785 375 KGLVNACKSFKL 386 (525)
Q Consensus 375 ~~i~~a~~~~~~ 386 (525)
.++.+++++.+.
T Consensus 191 ~g~~~~l~~~g~ 202 (269)
T cd06275 191 MGALCAAQEAGL 202 (269)
T ss_pred HHHHHHHHHcCC
Confidence 778888777543
No 308
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=25.91 E-value=92 Score=21.48 Aligned_cols=28 Identities=25% Similarity=0.224 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHCCCCe-EEEcChhHHHHH
Q psy7785 446 NVQEGKRILDESKLPL-IFASDLDEAASL 473 (525)
Q Consensus 446 ~e~eak~LL~ayGIpv-~lA~s~deAv~~ 473 (525)
+..+-++.|..+||++ ..+.+.|+.++.
T Consensus 5 s~~~L~~wL~~~gi~~~~~~~~rd~Ll~~ 33 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVPKSAKTRDELLKL 33 (38)
T ss_pred CHHHHHHHHHHcCCCCCCCCCCHHHHHHH
Confidence 3567899999999999 444799998884
No 309
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=25.80 E-value=4.9e+02 Score=23.37 Aligned_cols=103 Identities=22% Similarity=0.262 Sum_probs=60.5
Q ss_pred HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCC-CCcEEEEe
Q psy7785 316 ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKL-SIPLVVRL 394 (525)
Q Consensus 316 laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~-~kPivv~~ 394 (525)
+.+-.++..|.++ +|++.+.+++.+.++... .++|.|.+.+..+ .....+..+.+.+++.+. +.++++
T Consensus 22 iv~~~lr~~G~eV---i~LG~~vp~e~i~~~a~~----~~~d~V~lS~~~~--~~~~~~~~~~~~L~~~~~~~~~i~v-- 90 (137)
T PRK02261 22 ILDRALTEAGFEV---INLGVMTSQEEFIDAAIE----TDADAILVSSLYG--HGEIDCRGLREKCIEAGLGDILLYV-- 90 (137)
T ss_pred HHHHHHHHCCCEE---EECCCCCCHHHHHHHHHH----cCCCEEEEcCccc--cCHHHHHHHHHHHHhcCCCCCeEEE--
Confidence 3445777777664 788888888876665533 3577777644332 223445566666665433 333433
Q ss_pred CCc------chHHHHHHHhhCCCC-cccc-CCHHHHHHHHHHh
Q psy7785 395 EGT------NVQEGKRILDESKLP-LIFA-SDLDEAASLVNAC 429 (525)
Q Consensus 395 ~g~------~~~~~~~~L~~~Gvp-vf~~-~s~~~Av~Al~~l 429 (525)
+|. ...+..+.|++.|+- +|.. .++++.+..+.+.
T Consensus 91 GG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~ 133 (137)
T PRK02261 91 GGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKD 133 (137)
T ss_pred ECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHH
Confidence 332 245556789999985 5632 3567766666544
No 310
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=25.37 E-value=4.3e+02 Score=25.21 Aligned_cols=75 Identities=15% Similarity=0.159 Sum_probs=41.8
Q ss_pred CcEEEEecchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHH
Q psy7785 302 GNIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAK 375 (525)
Q Consensus 302 ~rIaIitnsGG~gv------laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~ 375 (525)
++|++++...+... -..|.+.+.|+..... +.++.+.+...+.++.+++.+.+|+++.. .+.++.
T Consensus 117 ~~i~~i~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~ai~~~-------~d~~a~ 187 (264)
T cd01574 117 RTIAHVAGPEEWLSARARLAGWRAALEAAGIAPPPV--LEGDWSAESGYRAGRELLREGDPTAVFAA-------NDQMAL 187 (264)
T ss_pred CEEEEEecCCccchHHHHHHHHHHHHHHCCCCccee--eecCCCHHHHHHHHHHHHhCCCCcEEEEc-------CcHHHH
Confidence 57888865544211 1345666667654322 22333444444555555555558887752 245677
Q ss_pred HHHHHHHhcC
Q psy7785 376 GLVNACKSFK 385 (525)
Q Consensus 376 ~i~~a~~~~~ 385 (525)
++++++++++
T Consensus 188 g~~~~~~~~g 197 (264)
T cd01574 188 GVLRALHELG 197 (264)
T ss_pred HHHHHHHHcC
Confidence 7888877644
No 311
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=25.32 E-value=6.6e+02 Score=27.01 Aligned_cols=148 Identities=10% Similarity=0.056 Sum_probs=69.1
Q ss_pred HHHHHHHHHH-HhcCCCccEEEEEe-cccccChHHHHHHHHHHHHhcCCCCcEEEEe-CCcchHHHHHHHhhCCCCcccc
Q psy7785 340 EESIIQAFRI-ISSDSNVKCILVNV-FGGIVNCATIAKGLVNACKSFKLSIPLVVRL-EGTNVQEGKRILDESKLPLIFA 416 (525)
Q Consensus 340 ~~~~~~al~~-ll~dp~vd~vlv~~-~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~-~g~~~~~~~~~L~~~Gvpvf~~ 416 (525)
.+.+.++++- +.+.++.++|+|.. +....-.++ .+++++.+++...++||+... .|.. | ...
T Consensus 81 ~~~L~~ai~ei~~~~~~P~~I~V~tTC~~e~IGDD-i~~v~~e~~~~~~~~pvv~v~t~Gf~-----------g-~~~-- 145 (427)
T PRK02842 81 NEELDRVVEELIKRRPNISVLFLVGSCPSEVIKLD-LEGLAERLSTEFAGVPVLNYSGSGLE-----------T-TFT-- 145 (427)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEECCChHHhhcCC-HHHHHHHhhcccCCCeEEEeeCCCcc-----------c-cHH--
Confidence 4567777776 55556788888753 221111111 123333333311268887532 2211 0 000
Q ss_pred CCHHHHHHHHHHhhcccCCCCeEEE----eCCCCHHHHHHHHHHCCCCe-EEEcC--hhHHHHHHHHhhhcCCCCcEEEE
Q psy7785 417 SDLDEAASLVNACKSFKLSIPLVVR----LEGTNVQEGKRILDESKLPL-IFASD--LDEAASLVNACKSFKLSIPLVVR 489 (525)
Q Consensus 417 ~s~~~Av~Al~~l~~~~~~~P~~~~----l~g~~e~eak~LL~ayGIpv-~lA~s--~deAv~~~~aa~~~~~G~PVVlK 489 (525)
...+.+++++..........+-... .+.....|-+++|+..||++ .+..+ .++.-. +.. +-++.+
T Consensus 146 ~G~~~~~~alv~~~~~~~~~~~~VniiG~~~~~d~~el~~lL~~~Gi~v~~~lp~~~~~d~~~----~~~---~~~~~~- 217 (427)
T PRK02842 146 QGEDAVLAALVPFCPEAPADHPSLVLVGSLADVVEDQLTLEFKKLGIGVVGFLPARRFTELPA----IGP---GTVVAL- 217 (427)
T ss_pred HHHHHHHHHHhhhcccccCCCCcEEEEEeCCcchHHHHHHHHHHcCCeeEEEeCCccHHHHhh----cCc---CcEEEE-
Confidence 1234455555443211111110111 22234468999999999998 34433 232221 111 444433
Q ss_pred EecCChHHHHHhhhhCCCCcee
Q psy7785 490 LEGTNVQEGKRILDESKLPLIF 511 (525)
Q Consensus 490 i~~~~~~~~~~~~~~~~~~~~~ 511 (525)
+++-...+-+.|.+.|.++..
T Consensus 218 -~~~~~~~~A~~L~~~GiP~~~ 238 (427)
T PRK02842 218 -AQPFLSDTARALRERGAKVLT 238 (427)
T ss_pred -eCHHHHHHHHHHHHcCCcccc
Confidence 444444555666658888743
No 312
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=25.31 E-value=1.6e+02 Score=30.06 Aligned_cols=64 Identities=17% Similarity=0.237 Sum_probs=45.6
Q ss_pred CcEEEEecchhHH-HHHH----HHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 302 GNIGCLVNGAGLA-MATM----DIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 302 ~rIaIitnsGG~g-vlaa----D~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
.+++++-.|-=++ -+.+ =.|++.|+. ..-.|+..+.+.+.+...++-+-+||++++|+|..+..
T Consensus 31 P~LavilvgddpaS~~YV~~K~k~~~~iGi~-~~~~~l~~~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp 99 (283)
T COG0190 31 PGLAVILVGDDPASQVYVRSKKKAAEEIGIA-SELYDLPEDITEEELLALIDELNADPEVDGILVQLPLP 99 (283)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCe-eEEEeCCCcCCHHHHHHHHHHhcCCCCCcEEEEeCCCC
Confidence 3555554444332 2222 367777775 46678888888899999999999999999999976643
No 313
>PRK05849 hypothetical protein; Provisional
Probab=25.21 E-value=5.2e+02 Score=30.48 Aligned_cols=103 Identities=7% Similarity=0.061 Sum_probs=58.3
Q ss_pred hCCCCCCCccccCC------HHHHHHH-HHhcCCCcEEEEEeeccccCCCCCccCCCcce--EEEeCCcc---cHHHHHH
Q psy7785 19 VSTVHSTDKVCLED------ARTATNI-LKDLNFKEYVIKAQILAGGRGLGHFDNGFKSG--VHFTNNVQ---DIPPILE 86 (525)
Q Consensus 19 ~~GIpvp~~~~~~~------~eea~~~-a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GG--V~l~~~~e---ea~~a~~ 86 (525)
..|.++|+.++++- .+...+. ...++..|++|..-... -.+. .++.+|- -.+|.+.+ ++.++++
T Consensus 22 ~~~~~i~~~~v~~~~e~~~~~~~~~~~i~~~~~~~~laVRSSa~~-ED~~---~~S~AGq~~S~lnV~~~~~~~L~~AI~ 97 (783)
T PRK05849 22 LKKAKILPLLLFSVREWLSNKDKVLEEIQNSFPADKLIVRSSSRS-EDSS---SSSNAGAFLSILNVNADSKDQLLKAIE 97 (783)
T ss_pred hcCCCCCCeEEeCHHhhccCHHHHHHHHHHhcCCCeEEEECCCcc-cCCC---cCccccCceeEecCCCCcHHHHHHHHH
Confidence 36788888877654 3333333 33333348998852110 0000 0122443 33554333 8999999
Q ss_pred HHhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCcc
Q psy7785 87 KMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGP 133 (525)
Q Consensus 87 ~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gp 133 (525)
+.+.+-. . ..-..|+||+|+....=-=|..++||..+.|
T Consensus 98 ~V~aS~~------~--~~~~aVlVQ~MV~~~~~SGV~FTrdP~tg~~ 136 (783)
T PRK05849 98 KVIASYG------T--SKDDEILVQPMLEDIVLSGVAMSRDPESGAP 136 (783)
T ss_pred HHHHhhC------C--CCCCeEEEEeCccCCCceEEEEECCCCCCCC
Confidence 9886521 0 1236799999997334445888999988434
No 314
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.46 E-value=1.6e+02 Score=30.40 Aligned_cols=63 Identities=13% Similarity=0.116 Sum_probs=45.0
Q ss_pred CcEEEEecchhHHHH-----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecc
Q psy7785 302 GNIGCLVNGAGLAMA-----TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFG 365 (525)
Q Consensus 302 ~rIaIitnsGG~gvl-----aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~ 365 (525)
..+++|-.|--++.. -.-+|++.|+... -+++..+.+.+.+.+.++.+-+|++||++++..+.
T Consensus 33 p~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~-~~~l~~~~~~~el~~~i~~lN~d~~V~GIlvq~Pl 100 (296)
T PRK14188 33 PGLAVVLVGEDPASQVYVRSKGKQTKEAGMASF-EHKLPADTSQAELLALIARLNADPAIHGILVQLPL 100 (296)
T ss_pred CeEEEEEeCCChhHHHHHHHHHHHHHHcCCEEE-EEECCCCCCHHHHHHHHHHHhCCCCCcEEEEeCCC
Confidence 356666665443322 2356777887532 34566778888899999999999999999997654
No 315
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=24.44 E-value=7.7e+02 Score=27.92 Aligned_cols=120 Identities=13% Similarity=0.142 Sum_probs=70.9
Q ss_pred cEEEEeCCcchHHHHHHHhhCCCCccc-cCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe-----E
Q psy7785 389 PLVVRLEGTNVQEGKRILDESKLPLIF-ASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL-----I 462 (525)
Q Consensus 389 Pivv~~~g~~~~~~~~~L~~~Gvpvf~-~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv-----~ 462 (525)
.++++-.|.--....+.|.+.|+|+.. ..++++ ++.+.+.- .++ ..|- ..-.++|++.|+.- .
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~-v~~~~~~g-----~~v---~~GD--at~~~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 402 QVIIVGFGRFGQVIGRLLMANKMRITVLERDISA-VNLMRKYG-----YKV---YYGD--ATQLELLRAAGAEKAEAIVI 470 (601)
T ss_pred CEEEecCchHHHHHHHHHHhCCCCEEEEECCHHH-HHHHHhCC-----CeE---EEee--CCCHHHHHhcCCccCCEEEE
Confidence 455554444223345678888999876 456654 55554321 111 1110 01356888888875 4
Q ss_pred EEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHHHHHHh
Q psy7785 463 FASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAANWF 522 (525)
Q Consensus 463 lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (525)
..+|.++....+..++++++.-+++.+. +-.+-.+.|++.|.+..+-|+++.+..-+
T Consensus 471 ~~~d~~~n~~i~~~~r~~~p~~~IiaRa---~~~~~~~~L~~~Ga~~vv~e~~es~l~l~ 527 (601)
T PRK03659 471 TCNEPEDTMKIVELCQQHFPHLHILARA---RGRVEAHELLQAGVTQFSRETFSSALELG 527 (601)
T ss_pred EeCCHHHHHHHHHHHHHHCCCCeEEEEe---CCHHHHHHHHhCCCCEEEccHHHHHHHHH
Confidence 4555566667777777752233465555 44466778888888888888887766543
No 316
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=24.20 E-value=5.3e+02 Score=26.84 Aligned_cols=108 Identities=19% Similarity=0.111 Sum_probs=55.9
Q ss_pred cCCcEEEEecchhHH-----HHHHHHHHHcCCCCCCe------eeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccccc
Q psy7785 300 MDGNIGCLVNGAGLA-----MATMDIIKLHGGEPANF------LDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIV 368 (525)
Q Consensus 300 ~~~rIaIitnsGG~g-----vlaaD~~~~~Gl~~aNP------lDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~ 368 (525)
.+..|+||+.|++.- -.+...++..|+++.+= .........++..+.. .+..||+|++|+... || .
T Consensus 9 ~gd~I~iIaPSs~~~~~~~~~~a~~~L~~~G~~v~~~~~i~~~~~~~a~s~~~R~~dL~-~af~d~~vk~Il~~r-GG-y 85 (313)
T COG1619 9 EGDEIGIIAPSSGATATDALKRAIQRLENLGFEVVFGEHILRRDQYFAGSDEERAEDLM-SAFSDPDVKAILCVR-GG-Y 85 (313)
T ss_pred CCCEEEEEecCcccchHHHHHHHHHHHHHcCCEEEechhhhhccccccCCHHHHHHHHH-HHhcCCCCeEEEEcc-cC-C
Confidence 367899999999988 22334566678753111 1122222234444444 445699999888643 22 2
Q ss_pred ChHHHHHHH-HHHHHhcCCCCcEEEEeCCcchHHHHHHHhhCCCCcc
Q psy7785 369 NCATIAKGL-VNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLI 414 (525)
Q Consensus 369 ~~~~ia~~i-~~a~~~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf 414 (525)
.+..+...| .+..+. .+|+++-.. +-..--..++.+.|++.|
T Consensus 86 gs~rlLp~ld~~~i~~--~pKifiGyS--DiTall~ai~~k~gl~Tf 128 (313)
T COG1619 86 GSNRLLPYLDYDLIRN--HPKIFIGYS--DITALLLAILAKTGLITF 128 (313)
T ss_pred ChhhhhhhcchHHHhc--CCceEEEec--HHHHHHHHHHHhcCCceE
Confidence 233333222 222333 456554211 111112457778888876
No 317
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=24.07 E-value=1.4e+02 Score=31.50 Aligned_cols=46 Identities=11% Similarity=0.076 Sum_probs=26.3
Q ss_pred HHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEE
Q psy7785 343 IIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVR 393 (525)
Q Consensus 343 ~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~ 393 (525)
+.+.++..++|+++|+++|... .....+.|-.+ ...-+ .+||||+.
T Consensus 93 la~~I~~~~~~~~~~GiVVtHG--TDTme~tA~~L-sl~l~--~~kPVVlT 138 (349)
T TIGR00520 93 LAKGINELLASDDYDGIVITHG--TDTLEETAYFL-DLTVK--SDKPVVIV 138 (349)
T ss_pred HHHHHHHHhccCCCCEEEEeCC--cccHHHHHHHH-HHHcC--CCCCEEEE
Confidence 4555666667788999997432 11123334333 33223 57999863
No 318
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.91 E-value=1.7e+02 Score=30.01 Aligned_cols=64 Identities=16% Similarity=0.119 Sum_probs=44.9
Q ss_pred CcEEEEecchhHHH-----HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 302 GNIGCLVNGAGLAM-----ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 302 ~rIaIitnsGG~gv-----laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
..+++|-.|-=++. .-.-.|++.|+. .--+.+..+.+.+.+.+.++.+-+|++||+++|..+..
T Consensus 30 P~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~-~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP 98 (287)
T PRK14173 30 PHLRVVRLGEDPASVSYVRLKDRQAKALGLR-SQVEVLPESTSQEELLELIARLNADPEVDGILVQLPLP 98 (287)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCC
Confidence 35666665533322 223577888875 23446677778888999999999999999999976643
No 319
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=23.83 E-value=4e+02 Score=25.49 Aligned_cols=79 Identities=16% Similarity=0.089 Sum_probs=42.7
Q ss_pred CcEEEEecchh-HH------HHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHH
Q psy7785 302 GNIGCLVNGAG-LA------MATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIA 374 (525)
Q Consensus 302 ~rIaIitnsGG-~g------vlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia 374 (525)
++|++++..-+ .. --..+.+.++|++.....-..+..+.+...+.++.+++.+.++++++. .+..+
T Consensus 117 ~~i~~l~~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~~~-------~d~~a 189 (268)
T cd06298 117 KKIAFISGPLEDSINGDERLAGYKEALSEANIEFDESLIFEGDYTYESGYELAEELLEDGKPTAAFVT-------DDELA 189 (268)
T ss_pred ceEEEEeCCcccccchhHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHhcCCCCCEEEEc-------CcHHH
Confidence 58999874433 11 112367777776532211122333444444555555554238988853 23456
Q ss_pred HHHHHHHHhcCCC
Q psy7785 375 KGLVNACKSFKLS 387 (525)
Q Consensus 375 ~~i~~a~~~~~~~ 387 (525)
.++++++++++..
T Consensus 190 ~~~~~~l~~~g~~ 202 (268)
T cd06298 190 IGILNAAQDAGLK 202 (268)
T ss_pred HHHHHHHHHcCCC
Confidence 6788887775443
No 320
>PRK11096 ansB L-asparaginase II; Provisional
Probab=23.42 E-value=4.1e+02 Score=28.03 Aligned_cols=87 Identities=14% Similarity=0.158 Sum_probs=0.0
Q ss_pred CcEEEEecchhHHH--------------HHHHHHHHcCCCCCCeeee---------cCCCCHHHHHHHHHHHhcC-CCcc
Q psy7785 302 GNIGCLVNGAGLAM--------------ATMDIIKLHGGEPANFLDV---------GGGVNEESIIQAFRIISSD-SNVK 357 (525)
Q Consensus 302 ~rIaIitnsGG~gv--------------laaD~~~~~Gl~~aNPlDl---------~g~a~~~~~~~al~~ll~d-p~vd 357 (525)
.+|.||+.||=.++ +..+.+-+.=-......++ +.+.+++.+.+..+.+.++ +++|
T Consensus 23 ~~I~vi~TGGTIa~~~~~~~~~~~~~g~~~~~~ll~~vp~l~~~~~i~~~~~~~~dS~~~t~~~~~~l~~~i~~~~~~~d 102 (347)
T PRK11096 23 PNITILATGGTIAGGGDSATKSNYTAGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQDMNDEVWLTLAKKINTDCDKTD 102 (347)
T ss_pred CcEEEEeCCCccccccCCccccccccCCCCHHHHHHhCccccccceEEEEEcccCCcccCCHHHHHHHHHHHHHhcCCCC
Q ss_pred EEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEE
Q psy7785 358 CILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVR 393 (525)
Q Consensus 358 ~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~ 393 (525)
+++|... ++..+........... .+||||+.
T Consensus 103 GiVVtHG---TDTme~tA~~Ls~~~~--~~kPVVlT 133 (347)
T PRK11096 103 GFVITHG---TDTMEETAYFLDLTVK--CDKPVVLV 133 (347)
T ss_pred EEEEeCC---CchHHHHHHHHHHhcc--CCCCEEEe
No 321
>TIGR02049 gshA_ferroox glutamate--cysteine ligase, T. ferrooxidans family. This family consists of a rare family of glutamate--cysteine ligases, demonstrated first in Thiobacillus ferrooxidans and present in a few other Proteobacteria. It is the first of two enzymes for glutathione biosynthesis. It is also called gamma-glutamylcysteine synthetase.
Probab=23.25 E-value=1.5e+02 Score=31.60 Aligned_cols=58 Identities=21% Similarity=0.328 Sum_probs=37.4
Q ss_pred EEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccCCCCCcccCeEEEEeeeCCceeEE
Q psy7785 48 YVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNITRETY 121 (525)
Q Consensus 48 vVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~ 121 (525)
|+||+|.- .=|- ||....+.+|+..-=++-..+ ......|..++.|+|||-+. ..|.+
T Consensus 260 ViVKADaG--TYGM---------GImtv~~~~ev~~LNrK~RnK----M~~~Keg~~V~~VIiQEGV~-T~E~~ 317 (403)
T TIGR02049 260 VIVKADAG--TYGM---------GIMTATSGEEVLGLNRKERNK----MAKVKEGLEVSEVIIQEGVY-TFEMF 317 (403)
T ss_pred EEEEcCCC--CCCc---------eEEEecCHHHHHHhhhhhhhh----cccccCCCccceEEEecCcc-eeeee
Confidence 78999832 1123 788888988877544333222 12234688899999999885 45544
No 322
>KOG2741|consensus
Probab=23.15 E-value=4.3e+02 Score=27.93 Aligned_cols=60 Identities=12% Similarity=0.180 Sum_probs=32.7
Q ss_pred HHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHh---hCCC
Q psy7785 344 IQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEG-TNVQEGKRILD---ESKL 411 (525)
Q Consensus 344 ~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g-~~~~~~~~~L~---~~Gv 411 (525)
+...+-|++||+||+|.|.++.. ...+++ ..++. .+|+|+|=+.- .+..++.++++ .+|+
T Consensus 61 y~syEeLakd~~vDvVyi~~~~~--qH~evv---~l~l~---~~K~VL~EKPla~n~~e~~~iveaA~~rgv 124 (351)
T KOG2741|consen 61 YGSYEELAKDPEVDVVYISTPNP--QHYEVV---MLALN---KGKHVLCEKPLAMNVAEAEEIVEAAEARGV 124 (351)
T ss_pred ccCHHHHhcCCCcCEEEeCCCCc--cHHHHH---HHHHH---cCCcEEecccccCCHHHHHHHHHHHHHcCc
Confidence 44567799999999987643321 112222 22222 46777764322 24556655554 4564
No 323
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.97 E-value=6.6e+02 Score=23.90 Aligned_cols=78 Identities=15% Similarity=0.067 Sum_probs=42.4
Q ss_pred CcEEEEecchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHH-HHHHHHHHhcCCCccEEEEEecccccChHHHH
Q psy7785 302 GNIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGVNEES-IIQAFRIISSDSNVKCILVNVFGGIVNCATIA 374 (525)
Q Consensus 302 ~rIaIitnsGG~gv------laaD~~~~~Gl~~aNPlDl~g~a~~~~-~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia 374 (525)
++|++++..-+... -..+.++.+|+......-..+..+.+. +....+.+.+.|++|++++. .+..|
T Consensus 117 ~~i~~l~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a 189 (269)
T cd06288 117 RRIAFINGEPWMLAAKDRLKGYRQALAEAGIPFDPDLVVHGDWSADDGYEAAAALLDLDDRPTAIFCG-------NDRMA 189 (269)
T ss_pred ceEEEEeCCccchhHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChHHHHHHHHHHHhCCCCCCEEEEe-------CcHHH
Confidence 47999876544211 123566666654322222234444443 44444445556789998853 24556
Q ss_pred HHHHHHHHhcCC
Q psy7785 375 KGLVNACKSFKL 386 (525)
Q Consensus 375 ~~i~~a~~~~~~ 386 (525)
.++.+++++.+.
T Consensus 190 ~~~~~~l~~~g~ 201 (269)
T cd06288 190 MGAYQALLERGL 201 (269)
T ss_pred HHHHHHHHHcCC
Confidence 677777776543
No 324
>KOG3432|consensus
Probab=22.93 E-value=3.8e+02 Score=23.51 Aligned_cols=61 Identities=25% Similarity=0.410 Sum_probs=44.0
Q ss_pred CCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCC
Q psy7785 328 PANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEG 396 (525)
Q Consensus 328 ~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g 396 (525)
-.|++-+.-..+.+.+.++++-+++.+++..+++| .-+|+-|......++...|-+.-...
T Consensus 35 ~~Nf~vv~~~Tt~~eiedaF~~f~~RdDIaIiLIn--------q~~Ae~iR~~vD~h~~~vPAvLeIpS 95 (121)
T KOG3432|consen 35 EPNFLVVDSKTTVEEIEDAFKSFTARDDIAIILIN--------QFIAEMIRDRVDAHTQAVPAVLEIPS 95 (121)
T ss_pred CCCEEEEeccCCHHHHHHHHHhhccccCeEEEEEh--------HHHHHHHHHHHHhccccCCeeEEecC
Confidence 46899888888889999999999998888877775 33455555555554445666654443
No 325
>PF01653 DNA_ligase_aden: NAD-dependent DNA ligase adenylation domain; InterPro: IPR013839 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalyzing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase: one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC). This entry represents the N-terminal adenylation domain of NAD-dependent DNA ligases. These are proteins of about 75 to 85 Kd whose sequence is well conserved [, ]. They also show similarity to yicF, an Escherichia coli hypothetical protein of 63 Kd. Despite a complete lack of detectable sequence similarity, the fold of the central core of this adenyaltion domain shares homology with the equivalent region of ATP-dependent DNA ligases [, ].; GO: 0003911 DNA ligase (NAD+) activity; PDB: 1ZAU_A 3SGI_A 1B04_A 3JSL_A 3JSN_A 1DGS_A 1V9P_A 3PN1_A 3BAC_A 3UQ8_A ....
Probab=22.84 E-value=1.7e+02 Score=30.44 Aligned_cols=91 Identities=20% Similarity=0.253 Sum_probs=54.5
Q ss_pred HHhhCCCCccccCCHHHHHHHHHHhhccc--CCCCeE--E----EeCC----CCHHHHHHHHHHCCCCe----EEEcChh
Q psy7785 405 ILDESKLPLIFASDLDEAASLVNACKSFK--LSIPLV--V----RLEG----TNVQEGKRILDESKLPL----IFASDLD 468 (525)
Q Consensus 405 ~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~--~~~P~~--~----~l~g----~~e~eak~LL~ayGIpv----~lA~s~d 468 (525)
...+.|-+.| .+|-.++.-..+..+.. ...++. + ...+ .+..+..+.|++.|+++ ..+.+.+
T Consensus 184 ~~~~~~~~~f--aNpRN~aAGsLr~~d~~~~~~r~L~f~~y~~~~~~~~~~~~t~~e~l~~L~~~GF~v~~~~~~~~~~~ 261 (315)
T PF01653_consen 184 EREEEGEKPF--ANPRNAAAGSLRQKDPSITAERKLSFFAYGIGEPEGDLGFNTQSERLQFLKEWGFPVNPYIRFCKSIE 261 (315)
T ss_dssp HHHHTTS-----SSHHHHHHHHHTSSSHHHHHTS--EEEEEEEEEETTSTT-SBHHHHHHHHHHTT--B-TTEEEESSHH
T ss_pred HHHHhccchh--hhhhHHHHHhhhhccchhhhcCeeEEEEEEecccccccChHHHHHHHHHHHHcCCCCCcceEecCCHH
Confidence 4456788999 99988887665432211 111211 1 1122 46778999999999998 7899999
Q ss_pred HHHHHHHHhhhcC--CCCc---EEEEEecCChHH
Q psy7785 469 EAASLVNACKSFK--LSIP---LVVRLEGTNVQE 497 (525)
Q Consensus 469 eAv~~~~aa~~~~--~G~P---VVlKi~~~~~~~ 497 (525)
++....+...+.+ ..|| +|+|+.+....+
T Consensus 262 ~v~~~~~~~~~~R~~l~y~iDGiVikvn~~~~~~ 295 (315)
T PF01653_consen 262 EVEEYIEEWEERREELPYPIDGIVIKVNDLALQE 295 (315)
T ss_dssp HHHHHHHHHHHHGCCSSS-EEEEEEEESBHHHHH
T ss_pred HHHHHHHHHHhhhhccccccCcEEEEecCHHHHH
Confidence 9887766554422 4787 899997655444
No 326
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=22.81 E-value=7.9e+02 Score=24.71 Aligned_cols=98 Identities=10% Similarity=0.155 Sum_probs=57.0
Q ss_pred CCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHHH
Q psy7785 329 ANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQEG 402 (525)
Q Consensus 329 aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~ 402 (525)
--|.|=.|+.+.+.+.+-++.+.+ .++++++++-..|. ... ..+.+.+++... .+.||++...+....++
T Consensus 10 ~TPf~~dg~iD~~~l~~~i~~l~~-~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~---~~~~vi~gv~~~~~~~~ 85 (292)
T PRK03170 10 VTPFKEDGSVDFAALRKLVDYLIA-NGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVN---GRVPVIAGTGSNSTAEA 85 (292)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHH-cCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhC---CCCcEEeecCCchHHHH
Confidence 346666788888889999999887 68999998644332 122 233333333332 35788876665444444
Q ss_pred H---HHHhhCCC-------CccccCCHHHHHHHHHHhh
Q psy7785 403 K---RILDESKL-------PLIFASDLDEAASLVNACK 430 (525)
Q Consensus 403 ~---~~L~~~Gv-------pvf~~~s~~~Av~Al~~l~ 430 (525)
. +...+.|+ |.|...+.++.++.+.++.
T Consensus 86 i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia 123 (292)
T PRK03170 86 IELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIA 123 (292)
T ss_pred HHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHH
Confidence 3 34556675 4443334444444444443
No 327
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=22.71 E-value=7.7e+02 Score=24.58 Aligned_cols=78 Identities=12% Similarity=0.168 Sum_probs=47.3
Q ss_pred CeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cChH---HHHHHHHHHHHhcCCCCcEEEEeCCcchHHHH
Q psy7785 330 NFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNCA---TIAKGLVNACKSFKLSIPLVVRLEGTNVQEGK 403 (525)
Q Consensus 330 NPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~~---~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~ 403 (525)
-|.|=.|+.+.+.+.+-++.+.+ .++++++++-..|. ...+ .+.+..++... .+.||++...+....++.
T Consensus 10 TPf~~dg~iD~~~~~~~i~~l~~-~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~---~~~~vi~gv~~~~~~~~~ 85 (284)
T cd00950 10 TPFKDDGSVDFDALERLIEFQIE-NGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVN---GRVPVIAGTGSNNTAEAI 85 (284)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHH-cCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhC---CCCcEEeccCCccHHHHH
Confidence 45666788888889999998886 68999998644332 1122 22333333222 357888766655444544
Q ss_pred H---HHhhCCC
Q psy7785 404 R---ILDESKL 411 (525)
Q Consensus 404 ~---~L~~~Gv 411 (525)
+ ...+.|+
T Consensus 86 ~~a~~a~~~G~ 96 (284)
T cd00950 86 ELTKRAEKAGA 96 (284)
T ss_pred HHHHHHHHcCC
Confidence 3 4455666
No 328
>PRK11778 putative inner membrane peptidase; Provisional
Probab=22.59 E-value=1.9e+02 Score=30.38 Aligned_cols=37 Identities=27% Similarity=0.431 Sum_probs=20.8
Q ss_pred cEEEEE--ecccccC-hHHHHHHHHHHHHhcCCCCcEEEEeCC
Q psy7785 357 KCILVN--VFGGIVN-CATIAKGLVNACKSFKLSIPLVVRLEG 396 (525)
Q Consensus 357 d~vlv~--~~~~~~~-~~~ia~~i~~a~~~~~~~kPivv~~~g 396 (525)
|+|++. .+||... +...+..|.+ .++ .+||++++..+
T Consensus 124 ~aVvLridSpGG~v~~s~~a~~~l~~-lr~--~~kpVva~v~~ 163 (330)
T PRK11778 124 DEVLLRLESPGGVVHGYGLAASQLQR-LRD--AGIPLTVAVDK 163 (330)
T ss_pred CeEEEEEeCCCCchhHHHHHHHHHHH-HHh--cCCCEEEEECC
Confidence 777773 4555432 3334444434 444 57899887654
No 329
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=22.58 E-value=1.1e+03 Score=26.51 Aligned_cols=108 Identities=10% Similarity=0.096 Sum_probs=62.0
Q ss_pred EEEecchhHHHHHHHHHHHcCCCC----------------CCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccccc
Q psy7785 305 GCLVNGAGLAMATMDIIKLHGGEP----------------ANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIV 368 (525)
Q Consensus 305 aIitnsGG~gvlaaD~~~~~Gl~~----------------aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~ 368 (525)
.||...|-.|-..+..+.+.|.+. +.++ +-||++.....+...+ .+.|++++...
T Consensus 403 vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v-~~GDat~~~~L~~agi----~~A~~vv~~~~---- 473 (601)
T PRK03659 403 VIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKV-YYGDATQLELLRAAGA----EKAEAIVITCN---- 473 (601)
T ss_pred EEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeE-EEeeCCCHHHHHhcCC----ccCCEEEEEeC----
Confidence 445556678899999999988731 2223 4455554433222222 34565554322
Q ss_pred ChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHH
Q psy7785 369 NCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASL 425 (525)
Q Consensus 369 ~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~A 425 (525)
.++....++...+++.++.+|+++... .+..+.|++.|+-....++.+.+...
T Consensus 474 -d~~~n~~i~~~~r~~~p~~~IiaRa~~---~~~~~~L~~~Ga~~vv~e~~es~l~l 526 (601)
T PRK03659 474 -EPEDTMKIVELCQQHFPHLHILARARG---RVEAHELLQAGVTQFSRETFSSALEL 526 (601)
T ss_pred -CHHHHHHHHHHHHHHCCCCeEEEEeCC---HHHHHHHHhCCCCEEEccHHHHHHHH
Confidence 233444555666665567788877643 34567888889875544555544433
No 330
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.24 E-value=1.9e+02 Score=29.85 Aligned_cols=63 Identities=13% Similarity=0.042 Sum_probs=43.5
Q ss_pred cEEEEecchhHHH-----HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 303 NIGCLVNGAGLAM-----ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 303 rIaIitnsGG~gv-----laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
++++|-.|-=++. .-.-+|++.|+.. --+++..+.+.+.+.+.++.+-+|++||+++|..+..
T Consensus 34 ~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~-~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PLP 101 (297)
T PRK14186 34 GLAVLRVGDDPASAVYVRNKEKACARVGIAS-FGKHLPADTSQAEVEALIAQLNQDERVDGILLQLPLP 101 (297)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCC
Confidence 5666555433222 2235677778752 2345677788888999999999999999999976643
No 331
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=22.11 E-value=77 Score=22.44 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=20.2
Q ss_pred EecCChHHHHHhhhhCCCCceeccCHHHHHHHh
Q psy7785 490 LEGTNVQEGKRILDESKLPLIFASDLDEAANWF 522 (525)
Q Consensus 490 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (525)
+.|.+.++|+++|..+| -|++.|++..
T Consensus 10 iTg~~~~~A~~~L~~~~------wdle~Av~~y 36 (43)
T PF14555_consen 10 ITGADEDVAIQYLEANN------WDLEAAVNAY 36 (43)
T ss_dssp HH-SSHHHHHHHHHHTT------T-HHHHHHHH
T ss_pred HHCcCHHHHHHHHHHcC------CCHHHHHHHH
Confidence 45778999999999964 4788888765
No 332
>PRK12378 hypothetical protein; Provisional
Probab=22.03 E-value=2e+02 Score=28.62 Aligned_cols=59 Identities=19% Similarity=0.333 Sum_probs=44.5
Q ss_pred CcEEEEecchhHHHHHHHHHHHcCCC---------CCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEE
Q psy7785 302 GNIGCLVNGAGLAMATMDIIKLHGGE---------PANFLDVGGGVNEESIIQAFRIISSDSNVKCILVN 362 (525)
Q Consensus 302 ~rIaIitnsGG~gvlaaD~~~~~Gl~---------~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~ 362 (525)
+.+-|+|..--+..+ .+.|+..|++ |.|++++... ..+.+.+.++.|.++++|..|.-|
T Consensus 166 ~~~~i~t~p~~~~~v-~~~L~~~g~~~~~sei~~~P~~~v~l~~e-~~~~~~~li~~Led~dDVq~Vy~N 233 (235)
T PRK12378 166 GTITVYTDPTDFHKV-KKALEAAGIEFLVAELEMIPQNPVELSGE-DLEQFEKLLDALEDDDDVQNVYHN 233 (235)
T ss_pred CeEEEEECHHHHHHH-HHHHHHcCCCceeeEEEEecCCCccCCHH-HHHHHHHHHHHHhcCCCccceeeC
Confidence 457777777766654 5788899973 7899998542 245689999999999999887754
No 333
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.95 E-value=4.4e+02 Score=25.09 Aligned_cols=43 Identities=12% Similarity=0.043 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHHh-cCCCccEEEEEecccccChHHHHHHHHHHHHhcCC
Q psy7785 337 GVNEESIIQAFRIIS-SDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKL 386 (525)
Q Consensus 337 ~a~~~~~~~al~~ll-~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~ 386 (525)
+.+.+...+.++.++ ..|++|+++.. .+..+.++.+++++.+.
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~~i~~~-------~~~~a~~~~~al~~~g~ 202 (268)
T cd06289 159 PPSRQGGAEAVAQLLDLPPRPTAIVCF-------NDLVAFGAMSGLRRAGL 202 (268)
T ss_pred CcchhhHHHHHHHHHcCCCCCCEEEEc-------CcHHHHHHHHHHHHcCC
Confidence 333444444444444 45889988852 24556677888877543
No 334
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=21.67 E-value=2.3e+02 Score=26.77 Aligned_cols=62 Identities=21% Similarity=0.253 Sum_probs=36.7
Q ss_pred CCcEEEEe-cchhHHHHHHHHHHHc-CC--CCCC----ee-ee--cCCCCHH---HHHHHHHHHhcCCCccEEEEE
Q psy7785 301 DGNIGCLV-NGAGLAMATMDIIKLH-GG--EPAN----FL-DV--GGGVNEE---SIIQAFRIISSDSNVKCILVN 362 (525)
Q Consensus 301 ~~rIaIit-nsGG~gvlaaD~~~~~-Gl--~~aN----Pl-Dl--~g~a~~~---~~~~al~~ll~dp~vd~vlv~ 362 (525)
.+||+|+| .+=-..-...+.+.+. |+ .... .+ |+ .|..+++ .+.++++-+.++++.|+|++.
T Consensus 107 ~~ri~vl~t~~~~~~~~~~~~~~~~~gi~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~~~d~iiLg 182 (216)
T PF01177_consen 107 GKRIGVLTTYTTEKSPLYEEFIEEAAGIDDEVVAGIHNAIYDVIELGDIPPEQIEILAEAARELIKEDGADAIILG 182 (216)
T ss_dssp SSEEEEEESHHHHHHTHHHHHHHHCTTEECEEEEEEEEEHTHHHHTTCTTHHHHHHHHHHHHHHHHCTTSSEEEEE
T ss_pred CCEEEEEecCcccchHHHHHHHHHhcCCcHHHHHHHHhhcHHHHhhhcCCHHHHHHHHHHHHHHhccCCCCEEEEC
Confidence 46899999 4444556677888888 86 2111 11 22 3444554 244444444467888888864
No 335
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=21.55 E-value=6.1e+02 Score=26.72 Aligned_cols=75 Identities=12% Similarity=0.166 Sum_probs=49.4
Q ss_pred CCcEEEEecchh-----HHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHH
Q psy7785 301 DGNIGCLVNGAG-----LAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAK 375 (525)
Q Consensus 301 ~~rIaIitnsGG-----~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~ 375 (525)
+.|+.|||..+. ..--..+.++..|....-+-++.++++.+...++.+.+.+ -++|.|+- .||. ...++++
T Consensus 25 g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~-~~~D~Iia--vGGG-S~iD~aK 100 (380)
T cd08185 25 GKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALARE-EGCDFVVG--LGGG-SSMDTAK 100 (380)
T ss_pred CCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHH-cCCCEEEE--eCCc-cHHHHHH
Confidence 468999996543 2234566777778876666678888888888888877665 47887763 3332 2345555
Q ss_pred HHHH
Q psy7785 376 GLVN 379 (525)
Q Consensus 376 ~i~~ 379 (525)
.+.-
T Consensus 101 ~ia~ 104 (380)
T cd08185 101 AIAF 104 (380)
T ss_pred HHHH
Confidence 5543
No 336
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=21.49 E-value=8.5e+02 Score=24.62 Aligned_cols=155 Identities=11% Similarity=0.133 Sum_probs=80.1
Q ss_pred CeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc-c--cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHH
Q psy7785 330 NFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG-I--VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGK 403 (525)
Q Consensus 330 NPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~-~--~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~ 403 (525)
-|.|=-|+.+.+.+.+.++.+.+ .++|+++++-..| . ... ..+.+..++... .+.||++..+. ...++.
T Consensus 15 TPf~~dg~iD~~~l~~li~~l~~-~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~---g~~pvi~gv~~-~t~~ai 89 (296)
T TIGR03249 15 TPFDADGSFDEAAYRENIEWLLG-YGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAK---GKVPVYTGVGG-NTSDAI 89 (296)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHh-cCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhC---CCCcEEEecCc-cHHHHH
Confidence 45666688888889999999886 7899999864433 2 112 233333333332 46888876544 344443
Q ss_pred H---HHhhCCC-------CccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCeEEEcChhHHHHH
Q psy7785 404 R---ILDESKL-------PLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASL 473 (525)
Q Consensus 404 ~---~L~~~Gv-------pvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv~lA~s~deAv~~ 473 (525)
+ ...+.|+ |.|...+.+..++.+....+. ...|+..-. . .|+++ +.+...+
T Consensus 90 ~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a-~~~pvilYn--~-----------~g~~l----~~~~~~~- 150 (296)
T TIGR03249 90 EIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCES-TDLGVIVYQ--R-----------DNAVL----NADTLER- 150 (296)
T ss_pred HHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhc-cCCCEEEEe--C-----------CCCCC----CHHHHHH-
Confidence 3 3345565 333223433333333333221 123322210 0 12111 3333333
Q ss_pred HHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCceec
Q psy7785 474 VNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFA 512 (525)
Q Consensus 474 ~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~ 512 (525)
.+++. .-=+.+|-.+.+.+.-+++....+-...++
T Consensus 151 --La~~~--~nvvgiKds~~d~~~~~~~~~~~~~~~~v~ 185 (296)
T TIGR03249 151 --LADRC--PNLVGFKDGIGDMEQMIEITQRLGDRLGYL 185 (296)
T ss_pred --HHhhC--CCEEEEEeCCCCHHHHHHHHHHcCCCeEEE
Confidence 33331 233677888888888888776533234444
No 337
>PF01709 Transcrip_reg: Transcriptional regulator; InterPro: IPR002876 This entry represents the core region of several hypothetical proteins found in bacteria, plants, and yeast proteins. This core region can be subdivided into three domains: a 3-helical bundle domain, and two alpha+beta domains with different folds, where domain 3 (ferredoxin-like fold) is inserted within domain 2. This core region is found in the following hypothetical proteins: YebC from Escherichia coli, HP0162 from Helicobacter pylori (Campylobacter pylori) and aq1575 from Aquifex aeolicus []. The crystal structure of a conserved hypothetical protein, Aq1575, from Aquifex aeolicus has been determined. A structural homology search reveals that this protein has a new fold with no obvious similarity to those of other proteins of known three-dimensional structure. The protein reveals a monomer consisting of three domains arranged along a pseudo threefold symmetry axis. There is a large cleft with approximate dimensions of 10 A x 10 A x 20 A in the centre of the three domains along the symmetry axis. Two possible active sites are suggested based on the structure and multiple sequence alignment. There are several highly conserved residues in these putative active sites [].; PDB: 1LFP_A 1MW7_A 1KON_A.
Probab=21.39 E-value=1.6e+02 Score=29.30 Aligned_cols=93 Identities=16% Similarity=0.260 Sum_probs=53.9
Q ss_pred chhccccccccCCCCCCChHhhhhhc--cCCcee-ccCCcEEEEecchhHHHHHHHHHHHcCCC---------CCCeeee
Q psy7785 267 AEFRQKNIFSQNEVSESDPREVDASK--YNLNYV-GMDGNIGCLVNGAGLAMATMDIIKLHGGE---------PANFLDV 334 (525)
Q Consensus 267 a~frq~~i~~~~~~~~~~~~E~~a~~--~~l~~~-~~~~rIaIitnsGG~gvlaaD~~~~~Gl~---------~aNPlDl 334 (525)
-.|-+.|++.+.. ...+.+++.... .+..=+ .-.+.+-++|..--... ..+.++..|++ |.||+.+
T Consensus 128 ~~F~~kG~i~~~~-~~~~~d~~~e~aIe~GaeDve~~d~~~~~~c~p~~~~~-v~~~L~~~g~~i~~~e~~~~P~~~v~l 205 (234)
T PF01709_consen 128 FMFERKGVIEVSK-KDLDEDELMEDAIEAGAEDVEEDDGEFEFICDPSDLSA-VKKALEKKGYEIESAELEYIPNNPVEL 205 (234)
T ss_dssp GGEEEEEEEEEEH-CCS-HHHHHHHHHHHTESEEEECTSEEEEEEEGGGHHH-HHHHHHHTT---SEEEEEEEESS-EE-
T ss_pred eeeeeeEEEEEEe-CCCChHHHHHHHHhCCCcEeeecCCeEEEEECHHHHHH-HHHHHHHcCCCeeEEEEEEeCCCCccc
Confidence 3477777776641 122333332211 111111 22456777777665555 56899999984 7899999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCccEEEEE
Q psy7785 335 GGGVNEESIIQAFRIISSDSNVKCILVN 362 (525)
Q Consensus 335 ~g~a~~~~~~~al~~ll~dp~vd~vlv~ 362 (525)
... ..+.+...++.|.++++|..|.-|
T Consensus 206 ~~e-~~~~~~~lie~Lee~dDV~~Vy~N 232 (234)
T PF01709_consen 206 SEE-DAEKVEKLIEALEELDDVQNVYHN 232 (234)
T ss_dssp -HH-HHHHHHHHHHHHHTSTTEEEEEES
T ss_pred CHH-HHHHHHHHHHHHhCCcCcceeeeC
Confidence 443 334589999999999999888754
No 338
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=20.69 E-value=6.4e+02 Score=25.22 Aligned_cols=118 Identities=7% Similarity=0.076 Sum_probs=60.8
Q ss_pred cEEEEecchhHHHHHHHHHHHc-CCCCCCeeee-----cCCCCH---------HHHHHHHHHHhcCCCccEEEEEecccc
Q psy7785 303 NIGCLVNGAGLAMATMDIIKLH-GGEPANFLDV-----GGGVNE---------ESIIQAFRIISSDSNVKCILVNVFGGI 367 (525)
Q Consensus 303 rIaIitnsGG~gvlaaD~~~~~-Gl~~aNPlDl-----~g~a~~---------~~~~~al~~ll~dp~vd~vlv~~~~~~ 367 (525)
||+|+...|..|-..+..+... +++..--+|- .+.... -.+..-++.+ ...+|.++.. +.
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l--~~~~DvVIdf--T~- 77 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAV--ETDPDVLIDF--TT- 77 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHh--cCCCCEEEEC--CC-
Confidence 6888887888998888887753 4432111221 010000 0111223333 2347866643 21
Q ss_pred cChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHH--HHH-HhhCCCCccccCCHHHHHHHHHHhh
Q psy7785 368 VNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEG--KRI-LDESKLPLIFASDLDEAASLVNACK 430 (525)
Q Consensus 368 ~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~--~~~-L~~~Gvpvf~~~s~~~Av~Al~~l~ 430 (525)
+.... .++..+-+ .++|+++...|...++. +.. -+++|+|++...+..=++..+.++.
T Consensus 78 --p~~~~-~~~~~al~--~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~ 138 (266)
T TIGR00036 78 --PEGVL-NHLKFALE--HGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFSIGVNLMFKLL 138 (266)
T ss_pred --hHHHH-HHHHHHHH--CCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcccHHHHHHHHHH
Confidence 22222 33333333 58999987666433333 222 2457899886566666666666554
No 339
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=20.67 E-value=2e+02 Score=30.49 Aligned_cols=47 Identities=15% Similarity=0.099 Sum_probs=35.5
Q ss_pred HHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 319 DIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 319 D~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
-+|++.|+.. --+.+..+.+.+.+.+.++.+-+|++||+|+|..+..
T Consensus 126 K~~e~~GI~~-~~~~lpe~~te~ell~~I~~LN~D~~V~GIlVQlPLP 172 (364)
T PLN02616 126 KACDSVGINS-FEVRLPEDSTEQEVLKFISGFNNDPSVHGILVQLPLP 172 (364)
T ss_pred HHHHHcCCEE-EEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCC
Confidence 5677778753 2234556677778899999999999999999976643
No 340
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=20.62 E-value=1.3e+02 Score=26.38 Aligned_cols=101 Identities=14% Similarity=0.172 Sum_probs=50.3
Q ss_pred cEEEEecchhHHHHHHHHHHH-cCCCC-----CCe-----ee---ecCCCCH-HHHHHHHHHHhcCCCccEEEEEecccc
Q psy7785 303 NIGCLVNGAGLAMATMDIIKL-HGGEP-----ANF-----LD---VGGGVNE-ESIIQAFRIISSDSNVKCILVNVFGGI 367 (525)
Q Consensus 303 rIaIitnsGG~gvlaaD~~~~-~Gl~~-----aNP-----lD---l~g~a~~-~~~~~al~~ll~dp~vd~vlv~~~~~~ 367 (525)
||+|+..+|=.|-..+..+.+ .|++. .++ -| +.|.... -+...-++.++++ .|.++ .|+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~--~DVvI--DfT-- 75 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEE--ADVVI--DFT-- 75 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH---SEEE--EES--
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhccc--CCEEE--EcC--
Confidence 689999999999999999988 45421 111 11 1111100 0112233444444 56444 232
Q ss_pred cChHHHHHHHHHHHHhcCCCCcEEEEeCCcc--hHHHHHHHhhCCCCcc
Q psy7785 368 VNCATIAKGLVNACKSFKLSIPLVVRLEGTN--VQEGKRILDESKLPLI 414 (525)
Q Consensus 368 ~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~--~~~~~~~L~~~Gvpvf 414 (525)
..+.+...++.+.+ .++|+|+...|-. ..+..+.+.+. +|++
T Consensus 76 --~p~~~~~~~~~~~~--~g~~~ViGTTG~~~~~~~~l~~~a~~-~~vl 119 (124)
T PF01113_consen 76 --NPDAVYDNLEYALK--HGVPLVIGTTGFSDEQIDELEELAKK-IPVL 119 (124)
T ss_dssp ---HHHHHHHHHHHHH--HT-EEEEE-SSSHHHHHHHHHHHTTT-SEEE
T ss_pred --ChHHhHHHHHHHHh--CCCCEEEECCCCCHHHHHHHHHHhcc-CCEE
Confidence 12333444555544 5799998777742 22234444444 7776
No 341
>PF01990 ATP-synt_F: ATP synthase (F/14-kDa) subunit; InterPro: IPR008218 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit F found in the V1 complex of V-ATPases (both eukaryotic and bacterial), as well as in the A1 complex of A-ATPases. Subunit F is a 16 kDa protein that is required for the assembly and activity of V-ATPase, and has a potential role in the differential targeting and regulation of the enzyme for specific organelles. This subunit is not necessary for the rotation of the ATPase V1 rotor, but it does promote catalysis []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 2D00_E 3A5C_P 3J0J_H 3A5D_H 2OV6_A 2QAI_B 3AON_B 2I4R_A.
Probab=20.54 E-value=2.7e+02 Score=23.17 Aligned_cols=50 Identities=20% Similarity=0.438 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhc--CCCCcEEEEeCC
Q psy7785 339 NEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSF--KLSIPLVVRLEG 396 (525)
Q Consensus 339 ~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~--~~~kPivv~~~g 396 (525)
+++...++++.+++++++..|++. ..+++.+-+...+. ....|+++...+
T Consensus 26 ~~ee~~~~l~~l~~~~~~gIIii~--------e~~~~~~~~~l~~~~~~~~~P~iv~IP~ 77 (95)
T PF01990_consen 26 DPEEAEEALKELLKDEDVGIIIIT--------EDLAEKIRDELDEYREESSLPLIVEIPS 77 (95)
T ss_dssp SHHHHHHHHHHHHHHTTEEEEEEE--------HHHHTTHHHHHHHHHHTSSSSEEEEEST
T ss_pred CHHHHHHHHHHHhcCCCccEEEee--------HHHHHHHHHHHHHHHhccCCceEEEcCC
Confidence 567799999999999999877763 23333333322221 257899987655
No 342
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=20.24 E-value=5.7e+02 Score=24.72 Aligned_cols=72 Identities=18% Similarity=0.111 Sum_probs=38.8
Q ss_pred HHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhc-CCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCc---EEEEe
Q psy7785 319 DIIKLHGGEPANFLDVGGGVNEESIIQAFRIISS-DSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIP---LVVRL 394 (525)
Q Consensus 319 D~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~-dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kP---ivv~~ 394 (525)
+++.++|++....+-..++.+.+...+.+..+++ .+.+|++++. .+.+|-++.+++++.+...| -++++
T Consensus 143 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a~g~~~~l~~~g~~vP~di~vvg~ 215 (269)
T cd06297 143 QALKDAGRPFSPDLLAITDHSEEGGRLAMRHLLEKASPPLAVFAS-------ADQQALGALQEAVELGLTVGEDVRVVGF 215 (269)
T ss_pred HHHHHcCCCCChhhEEeCCCChhhHHHHHHHHHcCCCCCcEEEEc-------CcHHHHHHHHHHHHcCCCCCCceEEEEE
Confidence 5666667653221112233334444445555554 4678988863 34567788888777543323 34455
Q ss_pred CCc
Q psy7785 395 EGT 397 (525)
Q Consensus 395 ~g~ 397 (525)
.+.
T Consensus 216 d~~ 218 (269)
T cd06297 216 DDH 218 (269)
T ss_pred CCc
Confidence 543
No 343
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=20.23 E-value=3.1e+02 Score=22.45 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=28.6
Q ss_pred cCCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCC
Q psy7785 300 MDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGG 337 (525)
Q Consensus 300 ~~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~ 337 (525)
....|-+++.+|.-+..++..+...|.+ |..++.|+
T Consensus 60 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~--~v~~l~GG 95 (101)
T cd01518 60 KGKKVLMYCTGGIRCEKASAYLKERGFK--NVYQLKGG 95 (101)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHhCCc--ceeeechh
Confidence 3457999999999999999999999875 55556554
No 344
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=20.17 E-value=1e+03 Score=25.13 Aligned_cols=148 Identities=15% Similarity=0.080 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhcCCCccEEEEEec-ccccChHHHHHHHHHHHHhcCCCCcEEEEe-CCcc--hHHHHHHHhhCCCCccc
Q psy7785 340 EESIIQAFRIISSDSNVKCILVNVF-GGIVNCATIAKGLVNACKSFKLSIPLVVRL-EGTN--VQEGKRILDESKLPLIF 415 (525)
Q Consensus 340 ~~~~~~al~~ll~dp~vd~vlv~~~-~~~~~~~~ia~~i~~a~~~~~~~kPivv~~-~g~~--~~~~~~~L~~~Gvpvf~ 415 (525)
.+++.++++-+.+.-+.++|+|... ......+++ +++++.+++ +.++||+... .|.. ...
T Consensus 72 ~~~L~~aI~ei~~~~~P~~I~V~sTCv~e~IGDDi-~~v~~~~~~-~~~~pvi~v~t~gf~g~~~~-------------- 135 (396)
T cd01979 72 YAELDRVVTQIKRDRNPSVIFLIGSCTTEVIKMDL-EGAAPRLSA-EIGVPILVASASGLDYTFTQ-------------- 135 (396)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEECCCHHHHHhcCH-HHHHHHHhh-cCCCcEEEeeCCCccccHHH--------------
Confidence 4668888888888656777777422 111111222 233333332 1578888653 2211 111
Q ss_pred cCCHHHHHHHHHHhhcccCCCCeEEE----eCCCCHHHHHHHHHHCCCCe-EEEcChhHHHHHHHHhhhcCCCCcEEEEE
Q psy7785 416 ASDLDEAASLVNACKSFKLSIPLVVR----LEGTNVQEGKRILDESKLPL-IFASDLDEAASLVNACKSFKLSIPLVVRL 490 (525)
Q Consensus 416 ~~s~~~Av~Al~~l~~~~~~~P~~~~----l~g~~e~eak~LL~ayGIpv-~lA~s~deAv~~~~aa~~~~~G~PVVlKi 490 (525)
..+.+++++..........+-... .+.....+-+++|+..||.+ ....+. + .+ + ..++ |-=.+.=.
T Consensus 136 --G~~~~~~alv~~~~~~~~~~~~VnliG~~~~~d~~el~~lL~~~Gi~v~~~~~d~-~-~~--~-~~~~--~~a~~~~~ 206 (396)
T cd01979 136 --GEDTVLAALVPRCPEKPSPERSLVLVGSLPDIVEDQLRRELEQLGIPVVGFLPPR-R-YT--D-LPVI--GPGTYVLG 206 (396)
T ss_pred --HHHHHHHHHhhhcccccCCCCceEEEEeCCcchHHHHHHHHHHcCCeEEEEeCCC-C-hH--H-hhcc--CcceEEEE
Confidence 123344444432210011111111 22124568999999999999 344432 1 11 1 2221 21111112
Q ss_pred ecCChHHHHHhhhh-CCCCceec
Q psy7785 491 EGTNVQEGKRILDE-SKLPLIFA 512 (525)
Q Consensus 491 ~~~~~~~~~~~~~~-~~~~~~~~ 512 (525)
.++-...+-+.|.+ .+.+|...
T Consensus 207 ~~~~~~~~A~~Le~r~giP~~~~ 229 (396)
T cd01979 207 IQPFLSRTATTLMRRRKCKLLSA 229 (396)
T ss_pred eChhHHHHHHHHHHhcCCCcccC
Confidence 24444566677776 88877443
No 345
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=20.03 E-value=7.7e+02 Score=25.55 Aligned_cols=82 Identities=17% Similarity=0.223 Sum_probs=50.6
Q ss_pred CCcEEEEecchhHH---HHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHH
Q psy7785 301 DGNIGCLVNGAGLA---MATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGL 377 (525)
Q Consensus 301 ~~rIaIitnsGG~g---vlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i 377 (525)
++|+-|||.++-.. --..+.+++.|.... +.++.+.++.+...++.+.+.+ .+.|.|+- +.||. ..++++.+
T Consensus 22 ~~r~livt~~~~~~~~~~~v~~~L~~~~i~~~-~~~~~~~p~~~~v~~~~~~~~~-~~~D~IIa-vGGGS--~iD~aK~i 96 (351)
T cd08170 22 GKRALIIADEFVLDLVGAKIEESLAAAGIDAR-FEVFGGECTRAEIERLAEIARD-NGADVVIG-IGGGK--TLDTAKAV 96 (351)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhCCCeEE-EEEeCCcCCHHHHHHHHHHHhh-cCCCEEEE-ecCch--hhHHHHHH
Confidence 56888888433222 223455666777654 7788899888888888887655 57886653 23332 34556655
Q ss_pred HHHHHhcCCCCcEEE
Q psy7785 378 VNACKSFKLSIPLVV 392 (525)
Q Consensus 378 ~~a~~~~~~~kPivv 392 (525)
... ...|+++
T Consensus 97 a~~-----~~~P~ia 106 (351)
T cd08170 97 ADY-----LGAPVVI 106 (351)
T ss_pred HHH-----cCCCEEE
Confidence 432 2467765
No 346
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=20.02 E-value=3.8e+02 Score=24.31 Aligned_cols=54 Identities=24% Similarity=0.355 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCc
Q psy7785 338 VNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGT 397 (525)
Q Consensus 338 a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~ 397 (525)
.+.+.+.+.++.+.++..+. +.+|.+||.. .-+..|.+..+. .+||+++...|.
T Consensus 15 ~~~~~~~~~l~~~~~~~~i~-l~inspGG~~---~~~~~i~~~i~~--~~~pvi~~v~g~ 68 (160)
T cd07016 15 VTAKEFKDALDALGDDSDIT-VRINSPGGDV---FAGLAIYNALKR--HKGKVTVKIDGL 68 (160)
T ss_pred cCHHHHHHHHHhccCCCCEE-EEEECCCCCH---HHHHHHHHHHHh--cCCCEEEEEcch
Confidence 45666788888776663222 3346666642 224456666666 679998877664
Done!