Query psy7785
Match_columns 525
No_of_seqs 279 out of 2542
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 18:48:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7785.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7785hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fp4_B Succinyl-COA ligase [GD 100.0 6.5E-76 2.2E-80 618.0 40.8 387 11-430 3-392 (395)
2 3ufx_B Succinyl-COA synthetase 100.0 2.9E-74 1E-78 606.2 34.2 370 11-431 3-375 (397)
3 2nu8_B SCS-beta, succinyl-COA 100.0 9.3E-73 3.2E-77 593.5 40.4 379 11-430 3-385 (388)
4 3mwd_A ATP-citrate synthase; A 100.0 6.9E-65 2.4E-69 536.3 21.2 370 8-430 3-418 (425)
5 3pff_A ATP-citrate synthase; p 100.0 5.3E-60 1.8E-64 530.8 21.8 356 8-415 3-404 (829)
6 1wr2_A Hypothetical protein PH 100.0 4.8E-33 1.6E-37 273.8 19.6 216 6-267 14-238 (238)
7 2csu_A 457AA long hypothetical 99.9 3.6E-22 1.2E-26 214.0 15.5 159 266-432 262-447 (457)
8 3dmy_A Protein FDRA; predicted 99.7 1.5E-17 5.2E-22 177.8 13.3 166 244-431 199-413 (480)
9 2cqy_A Propionyl-COA carboxyla 98.8 1.1E-09 3.7E-14 92.8 3.3 87 19-124 18-106 (108)
10 4eg0_A D-alanine--D-alanine li 98.7 1.1E-07 3.6E-12 96.4 14.9 93 19-138 117-213 (317)
11 3mjf_A Phosphoribosylamine--gl 98.7 4.9E-08 1.7E-12 103.5 10.3 97 19-138 117-213 (431)
12 3lp8_A Phosphoribosylamine-gly 98.6 8E-08 2.7E-12 102.2 11.0 91 19-129 133-223 (442)
13 3e5n_A D-alanine-D-alanine lig 98.6 4.8E-07 1.7E-11 94.5 16.4 92 19-138 169-264 (386)
14 4e4t_A Phosphoribosylaminoimid 98.6 1.9E-07 6.6E-12 98.6 12.2 90 19-138 143-237 (419)
15 3q2o_A Phosphoribosylaminoimid 98.6 1.6E-06 5.4E-11 90.3 17.8 92 19-138 122-213 (389)
16 3k5i_A Phosphoribosyl-aminoimi 98.5 8.1E-07 2.8E-11 93.3 13.8 84 19-129 133-219 (403)
17 3aw8_A PURK, phosphoribosylami 98.5 2.2E-07 7.5E-12 95.9 9.3 91 19-138 106-197 (369)
18 1vkz_A Phosphoribosylamine--gl 98.5 3.5E-07 1.2E-11 96.2 10.7 91 19-129 116-206 (412)
19 3glk_A Acetyl-COA carboxylase 98.5 4E-07 1.4E-11 99.3 11.2 95 19-138 174-297 (540)
20 3ouz_A Biotin carboxylase; str 98.5 6.9E-07 2.4E-11 94.8 12.7 99 19-138 129-229 (446)
21 3jrx_A Acetyl-COA carboxylase 98.5 5.9E-07 2E-11 98.6 11.8 95 19-138 190-313 (587)
22 2xcl_A Phosphoribosylamine--gl 98.4 6.3E-07 2.1E-11 94.2 10.5 91 19-129 112-202 (422)
23 3ln6_A Glutathione biosynthesi 98.4 3.2E-07 1.1E-11 103.5 8.5 104 19-150 494-606 (750)
24 2csu_A 457AA long hypothetical 98.4 3.1E-05 1.1E-09 82.6 23.4 212 302-523 150-442 (457)
25 3i12_A D-alanine-D-alanine lig 98.4 2.6E-06 9E-11 88.1 14.7 85 19-129 150-238 (364)
26 2yrx_A Phosphoribosylglycinami 98.4 7.6E-07 2.6E-11 94.6 10.4 91 19-129 133-223 (451)
27 1a9x_A Carbamoyl phosphate syn 98.4 8.4E-07 2.9E-11 104.2 11.6 94 19-137 138-231 (1073)
28 2yw2_A Phosphoribosylamine--gl 98.4 1E-06 3.4E-11 92.7 10.5 91 19-129 112-202 (424)
29 1ulz_A Pyruvate carboxylase N- 98.4 1.2E-06 4.2E-11 92.9 10.7 99 19-138 124-224 (451)
30 1a9x_A Carbamoyl phosphate syn 98.4 1.1E-06 3.8E-11 103.1 11.3 88 19-129 684-771 (1073)
31 1kjq_A GART 2, phosphoribosylg 98.3 1.3E-06 4.3E-11 90.7 10.1 91 18-129 122-212 (391)
32 2dzd_A Pyruvate carboxylase; b 98.3 1.8E-06 6E-11 92.0 11.1 97 19-136 130-228 (461)
33 2qk4_A Trifunctional purine bi 98.3 1.5E-06 5.2E-11 92.3 10.4 91 19-129 138-229 (452)
34 2z04_A Phosphoribosylaminoimid 98.3 5E-07 1.7E-11 93.1 6.2 91 19-138 102-193 (365)
35 3orq_A N5-carboxyaminoimidazol 98.3 1.7E-06 5.6E-11 90.0 10.0 91 19-138 120-211 (377)
36 2vpq_A Acetyl-COA carboxylase; 98.3 1.4E-06 4.7E-11 92.5 9.6 99 19-138 124-224 (451)
37 2ip4_A PURD, phosphoribosylami 98.3 1.2E-06 4.2E-11 91.9 9.1 87 19-129 111-197 (417)
38 1w96_A ACC, acetyl-coenzyme A 98.3 2.2E-06 7.5E-11 93.7 11.1 94 19-137 183-302 (554)
39 3vmm_A Alanine-anticapsin liga 98.2 6.2E-06 2.1E-10 88.4 12.8 104 19-137 149-265 (474)
40 2w70_A Biotin carboxylase; lig 98.2 1.6E-06 5.6E-11 91.8 8.1 99 19-138 125-226 (449)
41 3hbl_A Pyruvate carboxylase; T 98.2 7.5E-07 2.6E-11 104.8 5.9 99 19-138 128-228 (1150)
42 3se7_A VANA; alpha-beta struct 98.2 6.6E-06 2.3E-10 84.3 11.9 82 19-128 142-223 (346)
43 2dwc_A PH0318, 433AA long hypo 98.2 2.8E-06 9.7E-11 89.5 8.9 90 18-128 130-219 (433)
44 1iow_A DD-ligase, DDLB, D-ALA\ 98.2 3E-05 1E-09 77.1 15.9 84 19-130 106-197 (306)
45 3eth_A Phosphoribosylaminoimid 98.2 4.8E-06 1.7E-10 86.0 10.1 87 19-138 89-178 (355)
46 1ehi_A LMDDL2, D-alanine:D-lac 98.2 4.5E-06 1.6E-10 86.7 9.5 86 19-129 145-234 (377)
47 4dim_A Phosphoribosylglycinami 98.1 3.7E-06 1.2E-10 87.6 7.9 85 19-127 119-203 (403)
48 3r5x_A D-alanine--D-alanine li 98.1 3E-06 1E-10 84.8 6.1 83 19-127 107-190 (307)
49 3n6r_A Propionyl-COA carboxyla 98.1 1.9E-06 6.4E-11 96.5 4.3 99 19-138 125-225 (681)
50 3k3p_A D-alanine--D-alanine li 98.0 9.1E-06 3.1E-10 84.8 9.1 84 19-128 171-259 (383)
51 4fu0_A D-alanine--D-alanine li 98.0 5.7E-05 1.9E-09 77.7 14.8 85 19-129 149-236 (357)
52 2qf7_A Pyruvate carboxylase pr 98.0 4.7E-06 1.6E-10 98.3 6.8 98 19-137 144-243 (1165)
53 3va7_A KLLA0E08119P; carboxyla 98.0 6E-06 2.1E-10 97.6 7.0 99 19-138 154-253 (1236)
54 3ln7_A Glutathione biosynthesi 98.0 7.4E-06 2.5E-10 92.4 7.1 85 19-129 499-588 (757)
55 3tqt_A D-alanine--D-alanine li 98.0 1.4E-05 4.9E-10 82.9 8.6 84 19-128 150-238 (372)
56 3u9t_A MCC alpha, methylcroton 97.9 2.7E-06 9.4E-11 95.0 3.0 99 19-138 151-251 (675)
57 3lwb_A D-alanine--D-alanine li 97.9 1.4E-05 4.9E-10 82.9 7.8 85 19-129 161-247 (373)
58 2i87_A D-alanine-D-alanine lig 97.9 2E-05 6.8E-10 81.2 8.8 85 19-129 139-230 (364)
59 1uc8_A LYSX, lysine biosynthes 97.8 6.4E-06 2.2E-10 80.7 3.2 86 19-127 98-186 (280)
60 3ax6_A Phosphoribosylaminoimid 97.8 2.3E-05 8E-10 81.0 7.1 77 19-129 110-187 (380)
61 3dmy_A Protein FDRA; predicted 97.8 8E-05 2.7E-09 79.6 10.9 117 301-428 112-233 (480)
62 1e4e_A Vancomycin/teicoplanin 97.8 2.8E-05 9.5E-10 79.4 6.6 83 19-129 142-224 (343)
63 3mwd_B ATP-citrate synthase; A 97.8 0.00011 3.8E-09 75.0 11.0 122 300-428 167-313 (334)
64 2pvp_A D-alanine-D-alanine lig 97.7 3.9E-05 1.3E-09 79.5 7.6 77 19-121 159-237 (367)
65 1oi7_A Succinyl-COA synthetase 97.7 0.00026 8.8E-09 70.9 13.1 121 301-428 144-285 (288)
66 3vot_A L-amino acid ligase, BL 97.7 2.5E-05 8.4E-10 82.1 4.8 92 19-127 122-213 (425)
67 2pn1_A Carbamoylphosphate synt 97.7 8.4E-05 2.9E-09 74.9 8.2 85 19-136 124-210 (331)
68 3ufx_B Succinyl-COA synthetase 97.6 6.1E-05 2.1E-09 78.9 7.3 43 445-492 3-48 (397)
69 2fp4_A Succinyl-COA ligase [GD 97.6 0.00012 4.2E-09 73.9 8.9 118 301-421 152-290 (305)
70 2fb9_A D-alanine:D-alanine lig 97.6 3.9E-05 1.3E-09 77.8 4.9 83 19-129 128-210 (322)
71 2r7k_A 5-formaminoimidazole-4- 97.6 9.3E-05 3.2E-09 76.5 7.4 82 19-129 134-216 (361)
72 2yv2_A Succinyl-COA synthetase 97.5 0.00035 1.2E-08 70.2 10.0 121 301-427 151-292 (297)
73 2yv1_A Succinyl-COA ligase [AD 97.4 0.00042 1.4E-08 69.6 9.8 119 301-427 150-289 (294)
74 2nu8_A Succinyl-COA ligase [AD 97.4 0.00077 2.6E-08 67.4 11.4 120 301-427 144-284 (288)
75 3mjf_A Phosphoribosylamine--gl 97.2 0.0012 4.2E-08 69.6 11.2 121 346-494 18-153 (431)
76 3pff_A ATP-citrate synthase; p 97.1 0.0011 3.8E-08 75.0 9.7 123 301-429 654-800 (829)
77 2fp4_B Succinyl-COA ligase [GD 97.1 0.00071 2.4E-08 70.7 7.5 42 445-491 3-48 (395)
78 2nu8_B SCS-beta, succinyl-COA 97.0 0.00092 3.1E-08 69.7 7.4 43 445-492 3-49 (388)
79 2r85_A PURP protein PF1517; AT 97.0 0.0017 6E-08 65.0 9.1 82 19-130 110-191 (334)
80 3lp8_A Phosphoribosylamine-gly 96.9 0.0058 2E-07 64.6 12.7 92 375-494 73-169 (442)
81 1wr2_A Hypothetical protein PH 96.9 0.0011 3.8E-08 64.1 5.9 44 445-493 20-66 (238)
82 3ouz_A Biotin carboxylase; str 96.6 0.0026 8.7E-08 67.1 7.2 157 302-497 7-170 (446)
83 1z2n_X Inositol 1,3,4-trisphos 96.6 0.0043 1.5E-07 62.1 8.5 79 19-126 108-189 (324)
84 3glk_A Acetyl-COA carboxylase 96.5 0.0029 9.9E-08 68.8 6.9 169 302-503 41-248 (540)
85 3jrx_A Acetyl-COA carboxylase 96.4 0.0035 1.2E-07 68.7 6.9 165 303-500 58-261 (587)
86 1gsa_A Glutathione synthetase; 96.4 0.0087 3E-07 59.1 9.1 82 23-130 134-218 (316)
87 3vmm_A Alanine-anticapsin liga 96.2 0.019 6.3E-07 61.3 10.9 101 370-500 87-191 (474)
88 3va7_A KLLA0E08119P; carboxyla 96.2 0.0064 2.2E-07 72.0 7.7 164 302-504 32-201 (1236)
89 3u9t_A MCC alpha, methylcroton 96.1 0.0055 1.9E-07 68.4 6.1 161 302-502 29-197 (675)
90 3n6r_A Propionyl-COA carboxyla 96.1 0.007 2.4E-07 67.6 6.9 159 307-504 7-173 (681)
91 1ulz_A Pyruvate carboxylase N- 96.0 0.055 1.9E-06 56.8 13.0 151 302-494 3-162 (451)
92 1i7n_A Synapsin II; synapse, p 95.9 0.0095 3.2E-07 60.1 6.2 81 19-127 127-210 (309)
93 2vpq_A Acetyl-COA carboxylase; 95.7 0.15 5.3E-06 53.3 14.9 152 303-494 3-162 (451)
94 2q7d_A Inositol-tetrakisphosph 95.5 0.011 3.8E-07 60.5 5.1 78 20-127 134-216 (346)
95 1kjq_A GART 2, phosphoribosylg 95.1 0.05 1.7E-06 55.7 8.7 144 302-494 12-159 (391)
96 2p0a_A Synapsin-3, synapsin II 95.1 0.018 6.1E-07 58.9 5.1 81 19-127 144-227 (344)
97 2dwc_A PH0318, 433AA long hypo 95.0 0.084 2.9E-06 55.0 10.2 149 302-499 20-172 (433)
98 1pk8_A RAT synapsin I; ATP bin 95.0 0.024 8.4E-07 59.3 5.7 81 19-127 239-322 (422)
99 3i12_A D-alanine-D-alanine lig 94.9 0.023 8E-07 58.2 5.4 67 404-495 118-191 (364)
100 2yrx_A Phosphoribosylglycinami 94.8 0.074 2.5E-06 55.9 9.1 67 402-493 99-168 (451)
101 2ip4_A PURD, phosphoribosylami 94.8 0.067 2.3E-06 55.5 8.6 67 402-493 77-146 (417)
102 2pbz_A Hypothetical protein; N 94.7 0.0059 2E-07 61.9 0.3 81 19-138 108-188 (320)
103 3e5n_A D-alanine-D-alanine lig 94.6 0.036 1.2E-06 57.5 5.9 70 404-498 137-213 (386)
104 3k5i_A Phosphoribosyl-aminoimi 94.5 0.089 3.1E-06 54.6 8.8 141 301-492 24-169 (403)
105 4eg0_A D-alanine--D-alanine li 94.5 0.033 1.1E-06 55.7 5.1 70 403-494 84-157 (317)
106 4ffl_A PYLC; amino acid, biosy 94.4 0.028 9.6E-07 57.2 4.6 65 19-129 113-177 (363)
107 2dzd_A Pyruvate carboxylase; b 94.3 0.059 2E-06 56.8 6.9 155 302-494 7-168 (461)
108 3mwd_A ATP-citrate synthase; A 94.2 0.039 1.3E-06 58.0 5.1 42 446-492 7-61 (425)
109 2cqy_A Propionyl-COA carboxyla 94.2 0.01 3.4E-07 49.2 0.4 40 449-493 11-55 (108)
110 4fu0_A D-alanine--D-alanine li 94.0 0.045 1.5E-06 55.9 5.1 71 403-495 116-189 (357)
111 2w70_A Biotin carboxylase; lig 94.0 0.048 1.6E-06 57.2 5.3 149 303-494 4-164 (449)
112 2xcl_A Phosphoribosylamine--gl 93.9 0.073 2.5E-06 55.3 6.5 67 402-493 78-147 (422)
113 3k3p_A D-alanine--D-alanine li 93.8 0.091 3.1E-06 54.4 7.1 70 404-498 139-216 (383)
114 3hbl_A Pyruvate carboxylase; T 93.5 0.052 1.8E-06 64.0 5.0 161 303-503 6-175 (1150)
115 2qf7_A Pyruvate carboxylase pr 93.4 0.075 2.5E-06 62.8 6.1 162 303-503 15-191 (1165)
116 1uc8_A LYSX, lysine biosynthes 93.4 0.18 6.1E-06 48.6 7.9 76 403-504 66-144 (280)
117 2qk4_A Trifunctional purine bi 93.2 0.23 7.8E-06 52.1 9.0 67 402-493 104-174 (452)
118 2yw2_A Phosphoribosylamine--gl 93.2 0.16 5.5E-06 52.7 7.7 66 403-493 79-147 (424)
119 3df7_A Putative ATP-grAsp supe 93.1 0.1 3.4E-06 52.1 5.7 59 19-128 120-178 (305)
120 3eth_A Phosphoribosylaminoimid 92.4 0.2 6.8E-06 51.3 6.9 118 303-492 3-123 (355)
121 4dim_A Phosphoribosylglycinami 92.2 0.23 7.9E-06 51.0 7.2 145 302-496 8-157 (403)
122 1ehi_A LMDDL2, D-alanine:D-lac 92.1 0.19 6.4E-06 51.7 6.3 67 403-494 112-185 (377)
123 2pvp_A D-alanine-D-alanine lig 91.7 0.23 7.8E-06 51.0 6.5 70 403-498 126-200 (367)
124 1w96_A ACC, acetyl-coenzyme A 91.7 0.51 1.7E-05 51.0 9.5 152 301-494 47-245 (554)
125 3lwb_A D-alanine--D-alanine li 90.9 0.15 5.1E-06 52.5 4.1 70 404-498 129-203 (373)
126 3vot_A L-amino acid ligase, BL 90.8 0.63 2.1E-05 48.2 8.9 44 448-498 114-160 (425)
127 1vkz_A Phosphoribosylamine--gl 90.8 0.12 4E-06 53.7 3.2 43 447-494 107-152 (412)
128 3ln7_A Glutathione biosynthesi 90.7 0.12 3.9E-06 58.4 3.2 49 449-502 492-544 (757)
129 3se7_A VANA; alpha-beta struct 90.6 0.11 3.9E-06 52.5 2.8 66 403-495 109-177 (346)
130 3orq_A N5-carboxyaminoimidazol 90.3 0.22 7.7E-06 51.0 4.8 42 448-494 112-156 (377)
131 3aw8_A PURK, phosphoribosylami 90.2 0.32 1.1E-05 49.4 5.8 43 447-494 97-142 (369)
132 3tqt_A D-alanine--D-alanine li 90.1 0.32 1.1E-05 50.0 5.7 72 403-498 117-195 (372)
133 3ln6_A Glutathione biosynthesi 89.9 0.095 3.3E-06 59.0 1.7 46 448-498 486-535 (750)
134 2pn1_A Carbamoylphosphate synt 89.9 0.72 2.4E-05 45.7 8.0 78 403-503 91-169 (331)
135 3r5x_A D-alanine--D-alanine li 89.7 0.23 7.9E-06 48.9 4.1 67 404-494 75-144 (307)
136 3ax6_A Phosphoribosylaminoimid 89.6 1.5 5E-05 44.5 10.3 71 400-499 75-149 (380)
137 4e4t_A Phosphoribosylaminoimid 88.3 4.4 0.00015 42.0 13.0 143 298-491 32-179 (419)
138 2i87_A D-alanine-D-alanine lig 88.1 0.84 2.9E-05 46.3 7.2 67 403-494 106-182 (364)
139 3q2o_A Phosphoribosylaminoimid 88.0 0.46 1.6E-05 48.7 5.1 141 301-493 14-157 (389)
140 2z04_A Phosphoribosylaminoimid 86.4 0.38 1.3E-05 48.6 3.4 51 447-503 93-147 (365)
141 1e4e_A Vancomycin/teicoplanin 85.5 0.52 1.8E-05 47.4 3.9 69 403-498 109-180 (343)
142 1iow_A DD-ligase, DDLB, D-ALA\ 85.5 0.98 3.3E-05 44.0 5.8 69 404-495 74-150 (306)
143 2ehh_A DHDPS, dihydrodipicolin 82.3 26 0.00089 34.3 14.7 163 329-517 10-189 (294)
144 2fb9_A D-alanine:D-alanine lig 82.2 0.79 2.7E-05 45.8 3.5 64 403-494 95-161 (322)
145 1z2n_X Inositol 1,3,4-trisphos 82.1 2.7 9.3E-05 41.3 7.4 41 449-492 101-144 (324)
146 1ydh_A AT5G11950; structural g 80.4 12 0.0004 35.4 10.8 123 302-430 40-188 (216)
147 3flu_A DHDPS, dihydrodipicolin 79.6 44 0.0015 32.7 15.3 164 330-519 17-197 (297)
148 3si9_A DHDPS, dihydrodipicolin 79.5 27 0.00094 34.6 13.8 166 329-519 31-213 (315)
149 1o5k_A DHDPS, dihydrodipicolin 77.9 25 0.00087 34.7 13.0 151 328-504 21-188 (306)
150 3qze_A DHDPS, dihydrodipicolin 77.4 44 0.0015 33.0 14.6 164 329-518 32-212 (314)
151 3tak_A DHDPS, dihydrodipicolin 76.4 55 0.0019 31.9 14.8 166 331-522 12-194 (291)
152 3p04_A Uncharacterized BCR; SE 74.7 3.3 0.00011 33.5 4.3 37 464-503 12-48 (87)
153 3na8_A Putative dihydrodipicol 74.1 53 0.0018 32.5 14.1 166 329-519 33-215 (315)
154 1xky_A Dihydrodipicolinate syn 73.3 72 0.0025 31.2 15.8 162 330-517 22-200 (301)
155 1f6k_A N-acetylneuraminate lya 72.9 65 0.0022 31.4 14.4 163 331-519 14-193 (293)
156 2yxg_A DHDPS, dihydrodipicolin 72.1 68 0.0023 31.2 14.3 161 329-517 10-187 (289)
157 3cpr_A Dihydrodipicolinate syn 72.1 71 0.0024 31.3 14.5 97 330-430 26-138 (304)
158 3eb2_A Putative dihydrodipicol 70.0 37 0.0013 33.3 11.8 162 330-517 14-192 (300)
159 3m5v_A DHDPS, dihydrodipicolin 69.1 86 0.0029 30.6 14.3 157 335-518 22-197 (301)
160 1c2y_A Protein (lumazine synth 68.4 34 0.0011 30.6 9.9 121 302-431 14-148 (156)
161 1i7n_A Synapsin II; synapse, p 68.4 2.8 9.6E-05 41.9 3.2 68 401-493 89-162 (309)
162 2r8w_A AGR_C_1641P; APC7498, d 67.3 1E+02 0.0035 30.6 15.4 167 329-521 43-230 (332)
163 2ojp_A DHDPS, dihydrodipicolin 66.0 75 0.0026 30.9 13.1 161 331-517 12-189 (292)
164 2v9d_A YAGE; dihydrodipicolini 65.6 80 0.0027 31.6 13.4 150 330-504 41-207 (343)
165 3h5d_A DHDPS, dihydrodipicolin 65.5 1.1E+02 0.0037 30.2 14.2 162 329-517 16-195 (311)
166 3tla_A MCCF; serine protease, 65.4 15 0.00052 37.5 8.1 62 300-362 42-116 (371)
167 3l21_A DHDPS, dihydrodipicolin 64.8 1.1E+02 0.0037 30.0 14.1 151 329-505 24-191 (304)
168 3daq_A DHDPS, dihydrodipicolin 63.8 1E+02 0.0035 29.9 13.6 162 331-519 14-193 (292)
169 3b4u_A Dihydrodipicolinate syn 63.6 1.1E+02 0.0038 29.7 16.4 168 331-521 14-200 (294)
170 3nq4_A 6,7-dimethyl-8-ribityll 63.4 55 0.0019 29.2 10.3 121 301-431 12-149 (156)
171 3sr3_A Microcin immunity prote 61.2 20 0.00069 36.0 7.9 64 299-362 11-86 (336)
172 2r7k_A 5-formaminoimidazole-4- 60.6 7.1 0.00024 39.7 4.5 35 449-495 127-162 (361)
173 2p0a_A Synapsin-3, synapsin II 59.7 3.8 0.00013 41.6 2.2 67 402-493 107-179 (344)
174 2uva_G Fatty acid synthase bet 59.2 43 0.0015 41.8 11.7 136 335-472 615-772 (2060)
175 2hfv_A Hypothetical protein RP 59.1 8.1 0.00028 31.8 3.7 55 449-509 37-91 (97)
176 4e5s_A MCCFLIKE protein (BA_56 59.1 10 0.00035 38.1 5.3 64 299-362 10-85 (331)
177 3a5f_A Dihydrodipicolinate syn 59.0 1.3E+02 0.0043 29.2 13.2 147 331-504 13-176 (291)
178 3ixl_A Amdase, arylmalonate de 58.9 42 0.0014 31.8 9.4 61 302-362 118-187 (240)
179 3rst_A Signal peptide peptidas 57.6 16 0.00054 34.8 6.2 58 337-396 28-88 (240)
180 2wkj_A N-acetylneuraminate lya 57.0 1.5E+02 0.0051 28.9 14.6 162 330-518 21-200 (303)
181 1hqk_A 6,7-dimethyl-8-ribityll 54.2 62 0.0021 28.7 9.0 119 302-430 13-147 (154)
182 2vc6_A MOSA, dihydrodipicolina 54.0 1.6E+02 0.0055 28.5 13.7 92 335-430 15-122 (292)
183 1rvv_A Riboflavin synthase; tr 52.6 60 0.0021 28.8 8.6 119 302-430 13-147 (154)
184 2r85_A PURP protein PF1517; AT 51.9 15 0.0005 35.9 5.0 59 403-494 78-137 (334)
185 1rcu_A Conserved hypothetical 51.7 48 0.0016 30.6 8.2 112 302-429 57-192 (195)
186 3sbx_A Putative uncharacterize 51.4 97 0.0033 28.3 10.2 119 302-426 43-187 (189)
187 4h1h_A LMO1638 protein; MCCF-l 51.4 25 0.00084 35.1 6.7 64 299-362 10-85 (327)
188 3dbi_A Sugar-binding transcrip 51.1 65 0.0022 31.2 9.7 81 302-389 182-269 (338)
189 2a33_A Hypothetical protein; s 50.2 86 0.0029 29.3 9.8 122 302-429 44-191 (215)
190 2rfg_A Dihydrodipicolinate syn 49.5 1.9E+02 0.0066 28.0 13.2 157 335-517 15-188 (297)
191 1pk8_A RAT synapsin I; ATP bin 49.4 7.8 0.00027 40.4 2.6 77 402-503 202-294 (422)
192 3qk7_A Transcriptional regulat 48.9 56 0.0019 30.9 8.7 81 302-389 127-214 (294)
193 3d8u_A PURR transcriptional re 48.7 1.1E+02 0.0037 28.2 10.6 81 302-389 121-208 (275)
194 3e96_A Dihydrodipicolinate syn 48.6 2E+02 0.007 28.1 13.3 142 328-504 19-182 (316)
195 3bq9_A Predicted rossmann fold 48.3 72 0.0025 33.4 9.6 119 302-429 174-329 (460)
196 3s5o_A 4-hydroxy-2-oxoglutarat 47.2 2.1E+02 0.0072 27.9 15.9 166 329-518 23-206 (307)
197 1kz1_A 6,7-dimethyl-8-ribityll 46.6 76 0.0026 28.3 8.3 120 302-430 18-154 (159)
198 1p9l_A Dihydrodipicolinate red 46.3 59 0.002 31.0 8.2 110 303-430 2-116 (245)
199 1wek_A Hypothetical protein TT 45.9 64 0.0022 30.2 8.2 118 303-429 69-213 (217)
200 3qua_A Putative uncharacterize 45.3 1.7E+02 0.0058 26.9 10.9 115 302-426 52-196 (199)
201 1qpz_A PURA, protein (purine n 44.4 90 0.0031 30.2 9.5 81 302-389 178-265 (340)
202 2fep_A Catabolite control prot 44.0 1.1E+02 0.0039 28.5 10.0 79 302-387 134-220 (289)
203 3k4h_A Putative transcriptiona 44.0 1E+02 0.0035 28.7 9.6 79 302-387 132-217 (292)
204 3kke_A LACI family transcripti 43.5 95 0.0032 29.4 9.4 81 302-389 132-224 (303)
205 2h0a_A TTHA0807, transcription 43.5 1.6E+02 0.0053 27.1 10.8 81 302-389 115-207 (276)
206 1dbq_A Purine repressor; trans 42.3 99 0.0034 28.7 9.2 81 302-389 127-214 (289)
207 2pju_A Propionate catabolism o 42.2 2.2E+02 0.0075 26.6 14.2 104 410-523 82-188 (225)
208 2pcq_A Putative dihydrodipicol 41.6 1.1E+02 0.0038 29.5 9.5 95 331-430 9-116 (283)
209 3bbl_A Regulatory protein of L 41.6 1.1E+02 0.0038 28.5 9.5 79 302-387 126-213 (287)
210 1ejb_A Lumazine synthase; anal 39.7 1.1E+02 0.0039 27.4 8.4 122 302-431 17-161 (168)
211 3fkr_A L-2-keto-3-deoxyarabona 39.2 1.8E+02 0.0063 28.4 10.8 97 330-430 18-133 (309)
212 3g85_A Transcriptional regulat 39.1 91 0.0031 29.1 8.4 81 302-389 128-215 (289)
213 3iwt_A 178AA long hypothetical 39.0 68 0.0023 28.5 7.0 58 303-362 17-88 (178)
214 3brq_A HTH-type transcriptiona 37.9 1.2E+02 0.004 28.2 8.9 79 302-387 140-225 (296)
215 3gyb_A Transcriptional regulat 37.7 1.2E+02 0.004 28.1 8.9 78 302-387 119-201 (280)
216 3o9z_A Lipopolysaccaride biosy 37.6 1.3E+02 0.0043 29.4 9.3 104 303-414 5-127 (312)
217 2i0f_A 6,7-dimethyl-8-ribityll 37.5 2.2E+02 0.0074 25.2 10.6 119 302-431 13-150 (157)
218 3gv0_A Transcriptional regulat 37.1 1.1E+02 0.0038 28.6 8.6 81 302-389 128-215 (288)
219 2rgy_A Transcriptional regulat 36.9 1.3E+02 0.0044 28.1 9.1 81 302-389 129-216 (290)
220 1zl0_A Hypothetical protein PA 36.8 40 0.0014 33.4 5.5 62 301-362 17-87 (311)
221 3qfe_A Putative dihydrodipicol 36.8 3.1E+02 0.011 26.8 16.4 166 329-518 19-205 (318)
222 1t35_A Hypothetical protein YV 36.8 1.5E+02 0.005 27.0 9.0 122 302-429 32-179 (191)
223 3uq8_A DNA ligase; adenylated 36.6 53 0.0018 32.8 6.3 91 405-497 186-297 (322)
224 1ta8_A DNA ligase, NAD-depende 36.0 54 0.0019 32.9 6.3 91 405-497 189-299 (332)
225 1b04_A Protein (DNA ligase); D 35.8 55 0.0019 32.6 6.3 91 405-497 183-293 (318)
226 1di0_A Lumazine synthase; tran 35.5 69 0.0024 28.5 6.3 87 303-394 12-113 (158)
227 2o20_A Catabolite control prot 35.4 1.5E+02 0.0051 28.4 9.5 80 302-389 181-266 (332)
228 3d0c_A Dihydrodipicolinate syn 35.4 3.2E+02 0.011 26.6 17.1 154 329-517 20-197 (314)
229 3oa2_A WBPB; oxidoreductase, s 35.3 1.2E+02 0.0041 29.6 8.8 104 303-414 5-128 (318)
230 2cby_A ATP-dependent CLP prote 35.2 70 0.0024 29.5 6.6 60 332-396 30-94 (208)
231 2q5c_A NTRC family transcripti 34.8 2.6E+02 0.0088 25.3 13.3 119 390-523 54-177 (196)
232 3ngx_A Bifunctional protein fo 34.5 36 0.0012 33.3 4.5 62 302-365 28-94 (276)
233 4b4u_A Bifunctional protein fo 34.0 55 0.0019 32.4 5.8 64 302-366 54-122 (303)
234 4dpp_A DHDPS 2, dihydrodipicol 33.9 2.6E+02 0.009 28.1 11.1 112 316-431 53-182 (360)
235 2c2x_A Methylenetetrahydrofola 33.6 49 0.0017 32.4 5.4 64 302-366 33-101 (281)
236 2hsg_A Glucose-resistance amyl 33.6 1.3E+02 0.0045 28.8 8.7 79 302-387 178-264 (332)
237 3egc_A Putative ribose operon 32.8 95 0.0033 29.0 7.4 78 302-386 126-210 (291)
238 2yxb_A Coenzyme B12-dependent 32.1 2.6E+02 0.0087 24.4 11.4 118 302-430 19-143 (161)
239 3cs3_A Sugar-binding transcrip 32.0 1.5E+02 0.0052 27.3 8.6 78 302-389 119-204 (277)
240 2obx_A DMRL synthase 1, 6,7-di 31.7 69 0.0024 28.5 5.6 87 303-394 13-114 (157)
241 2b99_A Riboflavin synthase; lu 31.6 85 0.0029 27.9 6.1 76 311-393 15-98 (156)
242 4eys_A MCCC family protein; MC 31.3 41 0.0014 33.9 4.5 62 301-362 5-80 (346)
243 2hmc_A AGR_L_411P, dihydrodipi 30.6 4.1E+02 0.014 26.3 15.4 165 330-519 36-217 (344)
244 1b0a_A Protein (fold bifunctio 30.5 49 0.0017 32.5 4.8 63 302-365 34-101 (288)
245 3l07_A Bifunctional protein fo 30.3 63 0.0022 31.7 5.5 64 302-366 35-103 (285)
246 3jsl_A DNA ligase; NAD+-depend 30.3 49 0.0017 33.0 4.8 91 405-497 181-291 (318)
247 3bf0_A Protease 4; bacterial, 30.3 56 0.0019 35.4 5.7 78 301-396 300-380 (593)
248 1wsa_A Asparaginase, asparagin 30.2 61 0.0021 32.4 5.6 52 337-393 62-116 (330)
249 1a4i_A Methylenetetrahydrofola 30.2 51 0.0017 32.6 4.9 64 302-366 36-104 (301)
250 2fvy_A D-galactose-binding per 30.0 2.1E+02 0.0072 26.6 9.4 75 303-385 142-226 (309)
251 3h5o_A Transcriptional regulat 29.8 2.6E+02 0.009 26.7 10.3 81 302-389 179-266 (339)
252 3nxk_A Cytoplasmic L-asparagin 29.5 1.9E+02 0.0065 28.8 9.1 95 346-457 237-334 (334)
253 3jvd_A Transcriptional regulat 29.1 2.2E+02 0.0076 27.3 9.6 76 302-389 175-258 (333)
254 1yg6_A ATP-dependent CLP prote 29.1 94 0.0032 28.2 6.3 53 340-397 40-94 (193)
255 2xed_A Putative maleate isomer 29.1 87 0.003 30.1 6.3 64 302-366 147-218 (273)
256 4a26_A Putative C-1-tetrahydro 28.9 63 0.0022 31.9 5.3 64 302-366 38-106 (300)
257 3kjx_A Transcriptional regulat 28.6 1.6E+02 0.0056 28.3 8.5 81 302-389 186-274 (344)
258 3t7a_A Inositol pyrophosphate 28.5 7.5 0.00026 38.9 -1.5 39 14-53 102-153 (330)
259 1lfp_A Hypothetical protein AQ 28.4 77 0.0026 30.4 5.6 62 301-363 168-238 (249)
260 4a5o_A Bifunctional protein fo 28.3 66 0.0023 31.5 5.3 64 302-366 36-104 (286)
261 3c3k_A Alanine racemase; struc 28.3 2.2E+02 0.0077 26.3 9.2 78 302-389 125-211 (285)
262 3p2o_A Bifunctional protein fo 27.9 70 0.0024 31.3 5.4 64 302-366 34-102 (285)
263 2pjk_A 178AA long hypothetical 27.6 1.1E+02 0.0037 27.5 6.4 59 302-362 16-88 (178)
264 1y7o_A ATP-dependent CLP prote 27.5 1E+02 0.0036 28.6 6.4 52 341-397 60-113 (218)
265 3gh1_A Predicted nucleotide-bi 27.0 2E+02 0.0069 30.0 8.8 72 357-429 249-331 (462)
266 3u3x_A Oxidoreductase; structu 27.0 65 0.0022 32.1 5.2 101 302-414 27-143 (361)
267 2lqo_A Putative glutaredoxin R 27.0 1.7E+02 0.0058 23.1 6.8 56 448-506 18-84 (92)
268 3clk_A Transcription regulator 26.9 1.5E+02 0.005 27.7 7.6 79 302-387 126-210 (290)
269 4ffl_A PYLC; amino acid, biosy 26.6 70 0.0024 31.6 5.4 24 303-327 3-26 (363)
270 1jye_A Lactose operon represso 25.3 2.9E+02 0.01 26.6 9.7 79 302-389 180-265 (349)
271 2p2s_A Putative oxidoreductase 25.3 2.5E+02 0.0085 27.2 9.1 104 303-414 6-121 (336)
272 2r3b_A YJEF-related protein; p 25.2 39 0.0013 33.4 3.0 25 302-326 45-72 (310)
273 2dri_A D-ribose-binding protei 25.2 3.2E+02 0.011 25.0 9.6 76 302-386 124-206 (271)
274 1zau_A DNA ligase; AMP; HET: D 24.8 57 0.002 32.6 4.2 87 407-495 200-306 (328)
275 3h1g_A Chemotaxis protein CHEY 24.3 2.6E+02 0.009 22.0 12.6 116 303-429 7-124 (129)
276 3evn_A Oxidoreductase, GFO/IDH 23.9 97 0.0033 30.2 5.7 100 303-414 7-122 (329)
277 4ew6_A D-galactose-1-dehydroge 23.3 56 0.0019 32.2 3.9 103 303-414 27-136 (330)
278 3h75_A Periplasmic sugar-bindi 23.1 4.9E+02 0.017 24.7 13.1 102 302-414 146-258 (350)
279 4fn4_A Short chain dehydrogena 22.8 1.9E+02 0.0064 27.4 7.4 32 296-327 1-33 (254)
280 3qvl_A Putative hydantoin race 22.8 2.6E+02 0.0089 26.3 8.3 61 301-361 109-180 (245)
281 3l6u_A ABC-type sugar transpor 22.5 2.4E+02 0.0082 26.0 8.1 76 302-386 136-219 (293)
282 3bgk_A SMU.573, putative uncha 22.5 44 0.0015 33.1 2.8 25 302-326 59-86 (311)
283 3zwc_A Peroxisomal bifunctiona 22.5 1.8E+02 0.0063 32.3 8.2 81 293-396 20-115 (742)
284 4h3v_A Oxidoreductase domain p 22.4 1.1E+02 0.0039 30.0 6.0 60 347-414 67-133 (390)
285 2c92_A 6,7-dimethyl-8-ribityll 22.0 4.1E+02 0.014 23.5 9.7 119 302-431 18-151 (160)
286 2qu7_A Putative transcriptiona 21.5 3.4E+02 0.012 24.9 9.0 77 302-386 123-211 (288)
287 2wlt_A L-asparaginase; hydrola 21.4 2E+02 0.0069 28.5 7.5 96 346-457 234-332 (332)
288 2r91_A 2-keto-3-deoxy-(6-phosp 21.4 5.4E+02 0.018 24.5 11.1 96 330-430 9-118 (286)
289 1mkz_A Molybdenum cofactor bio 21.3 1.5E+02 0.0053 26.2 6.0 59 302-362 11-76 (172)
290 4fgs_A Probable dehydrogenase 21.3 1.7E+02 0.0057 28.2 6.7 65 299-363 26-111 (273)
291 1wsa_A Asparaginase, asparagin 21.3 1.7E+02 0.0059 29.0 6.9 78 347-428 232-312 (330)
292 2pbz_A Hypothetical protein; N 21.3 23 0.00077 35.4 0.4 44 449-503 101-145 (320)
293 3miz_A Putative transcriptiona 21.2 1.2E+02 0.004 28.6 5.6 81 302-389 132-224 (301)
294 4ei7_A Plasmid replication pro 21.1 4.7E+02 0.016 26.4 10.4 37 354-392 110-146 (389)
295 3hs3_A Ribose operon repressor 21.0 1.9E+02 0.0065 26.7 7.0 75 302-387 123-203 (277)
296 1nns_A L-asparaginase II; amid 20.8 1.8E+02 0.006 28.9 6.9 79 347-429 228-309 (326)
297 4fs3_A Enoyl-[acyl-carrier-pro 20.7 3.2E+02 0.011 25.3 8.6 90 299-396 3-95 (256)
298 3fwz_A Inner membrane protein 20.7 3.6E+02 0.012 22.2 10.0 107 300-421 6-127 (140)
299 1dgs_A DNA ligase; AMP complex 20.5 1.1E+02 0.0036 33.8 5.5 53 445-497 235-296 (667)
300 3g1w_A Sugar ABC transporter; 20.4 5.1E+02 0.017 23.9 11.6 99 302-410 128-234 (305)
301 2uv8_G Fatty acid synthase sub 20.3 2.1E+02 0.0073 35.7 8.6 120 307-444 610-734 (2051)
302 1kon_A Protein YEBC, YEBC; alp 20.2 2.2E+02 0.0074 27.3 7.0 61 301-363 170-239 (249)
303 3n6x_A Putative glutathionylsp 20.2 1.3E+02 0.0044 31.6 5.9 72 20-117 339-412 (474)
No 1
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=100.00 E-value=6.5e-76 Score=618.03 Aligned_cols=387 Identities=53% Similarity=0.852 Sum_probs=365.4
Q ss_pred ccHHhhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHH
Q psy7785 11 NFSYLVKP---VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEK 87 (525)
Q Consensus 11 ~~e~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~ 87 (525)
+.||++|+ +||||+|++.++++++|+.++++++||+|||||+|+.+|||||++|||+..|||+++.|++|+++++++
T Consensus 3 l~E~~aK~lL~~~GIpvp~~~~~~s~~ea~~~a~~lg~~PvVvK~~i~~GGrGKg~~ks~~~GGV~l~~s~~e~~~a~~~ 82 (395)
T 2fp4_B 3 LQEYQSKKLMSDNGVKVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQ 82 (395)
T ss_dssp CCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHTCSSEEEEECCSSSCGGGCEETTSCBCSEEEESCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCcCCCCeEEECCHHHHHHHHHHcCCCcEEEEEeeccCCCccCccccCCcCCEEEECCHHHHHHHHHH
Confidence 57899999 899999999999999999999999996479999999999999999999844999999999999999999
Q ss_pred HhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEEEecCCCCCC
Q psy7785 88 MIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGI 167 (525)
Q Consensus 88 l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~~l~p~~~l 167 (525)
|+++.+.++++++.|..+++|+||+|+++++|+|+++.+|+.|++|++++|..||++||.+..++||++.+++++|..++
T Consensus 83 ~l~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~i~~D~~~~~pvi~~s~~GG~~iE~va~~~~d~i~~~~idp~~~l 162 (395)
T 2fp4_B 83 MIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGI 162 (395)
T ss_dssp TTTSEEECTTSCTTCEECCCEEEEECCCCSEEEEEEEEEETTTTEEEEEEESSCSSCHHHHHHHCGGGCEEEECCTTTCC
T ss_pred HhhcchhhhccCCCCCccceEEEEEccCCceeEEEEEEEccccCceEEEEECCCCccceeccccCCceEEEEecCCCCCC
Confidence 99886656666667777889999999999999999999999996699999999999999998889999999999999999
Q ss_pred CHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcCCCceeeeecee
Q psy7785 168 TESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLV 247 (525)
Q Consensus 168 ~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~~~~~leiNPl~ 247 (525)
++.+|++|+.+||+ ++.+.+++.+++.+||++|.+.+++++|||||+
T Consensus 163 ~~~~a~~l~~~lg~---------------------------------~~~~~~~~~~~l~~l~~l~~~~d~~~lEINPl~ 209 (395)
T 2fp4_B 163 KDSQAQRMAENLGF---------------------------------LGPLQNQAADQIKKLYNLFLKIDATQVEVNPFG 209 (395)
T ss_dssp CHHHHHHHHHHTTC---------------------------------CHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CHHHHHHHHHHhCc---------------------------------CHHHHHHHHHHHHHHHHHhhhCCeEEEEeeeEE
Confidence 99999999998875 556899999999999999999999999999999
Q ss_pred EecCCcEEEeeeEEEecCCchhccccccccCCCCCCChHhhhhhccCCceeccCCcEEEEecchhHHHHHHHHHHHcCCC
Q psy7785 248 ETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGE 327 (525)
Q Consensus 248 v~~~g~~~alDa~i~ld~~a~frq~~i~~~~~~~~~~~~E~~a~~~~l~~~~~~~rIaIitnsGG~gvlaaD~~~~~Gl~ 327 (525)
++++|+++|+|+++.+|++|.|||+++++.+|.+++++.|..+.+++|+|++++||||+|+||||++|+++|.+..+|++
T Consensus 210 ~~~~g~~~alDaki~~ddnA~~r~~~~~~~~d~~~~~~~e~~a~~~~l~yv~l~G~Ig~~~nGaGlam~t~D~i~~~Gg~ 289 (395)
T 2fp4_B 210 ETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGK 289 (395)
T ss_dssp ECTTSCEEECSEEEEECGGGGGGCHHHHTTCCCTTSCHHHHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred EcCCCCEEEEEeEEEecccccccCcchhhhcCCCccChhhhhHHHcCCceeccCCeEEEEecCchHHHHHHHHHHHcCCC
Confidence 99987899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHHh
Q psy7785 328 PANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRILD 407 (525)
Q Consensus 328 ~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~~L~ 407 (525)
|+||+|++|+++.+++.++++++++||+||++|||+++|+++|+.+|++|+++.++.+.+|||++++.|++.++++++|+
T Consensus 290 paNflDvgG~a~~e~~~~al~~il~d~~v~~ilvni~ggi~~~d~vA~gii~a~~~~~~~~Pivvrl~G~n~~~g~~~L~ 369 (395)
T 2fp4_B 290 PANFLDLGGGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTNVHEAQNILT 369 (395)
T ss_dssp BCEEEECCSSCCHHHHHHHHHHHHHCTTCCEEEEEEEESSSCHHHHHHHHHHHHHHHTCCSCEEEEEEETTHHHHHHHHH
T ss_pred cCCcEEECCCCCHHHHHHHHHHHhCCCCCCEEEEEecCCccCcHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988667899999999998889999999
Q ss_pred hCCCCccccCCHHHHHHHHHHhh
Q psy7785 408 ESKLPLIFASDLDEAASLVNACK 430 (525)
Q Consensus 408 ~~Gvpvf~~~s~~~Av~Al~~l~ 430 (525)
+.|+|+|.++++++|++++.+++
T Consensus 370 ~~gl~~~~~~~~~~Aa~~~v~~~ 392 (395)
T 2fp4_B 370 NSGLPITSAVDLEDAAKKAVASV 392 (395)
T ss_dssp HTCSCCEECSSHHHHHHHHHHTT
T ss_pred HCCCceEeCCCHHHHHHHHHHHh
Confidence 99999999999999999998765
No 2
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=100.00 E-value=2.9e-74 Score=606.24 Aligned_cols=370 Identities=35% Similarity=0.573 Sum_probs=348.1
Q ss_pred ccHHhhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHH
Q psy7785 11 NFSYLVKP---VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEK 87 (525)
Q Consensus 11 ~~e~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~ 87 (525)
+.||++|+ +||||||++.+++|++|+.++++++|| |||||+++..+|||| .|||+++.|++|+++++++
T Consensus 3 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~aa~~lG~-PvVvKa~~~~ggkg~-------~GGV~l~~s~ee~~~a~~~ 74 (397)
T 3ufx_B 3 LHEYQAKEILARYGVPVPPGKVAYTPEEAKRIAEEFGK-RVVIKAQVHVGGRGK-------AGGVKLADTPQEAYEKAQA 74 (397)
T ss_dssp CCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHTS-CEEEEECCSSSCTTT-------TTCEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCCCeEEECCHHHHHHHHHHcCC-CEEEEEccccCCCCc-------cceEEEeCCHHHHHHHHHH
Confidence 67899999 899999999999999999999999997 999999997788777 8999999999999999999
Q ss_pred HhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEEEecCCCCCC
Q psy7785 88 MIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGI 167 (525)
Q Consensus 88 l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~~l~p~~~l 167 (525)
|+++.+ .|..+++|+||+|+++++|+|+|+++||.|++|+|+||..||++||.+++++||++.+++++|..|+
T Consensus 75 ~~~~~~-------~g~~~~~vlVEe~v~~g~El~vgv~~D~~~g~pvi~~s~~GGv~iE~~a~~~pd~i~~~~i~~~~~l 147 (397)
T 3ufx_B 75 ILGMNI-------KGLTVKKVLVAEAVDIAKEYYAGLILDRAKKRVVLMLSKEGGVDIEEVAAERPEAIHKFWIDPHKGF 147 (397)
T ss_dssp HTTCEE-------TTEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCCSSCHHHHHHHCGGGCEEEECBTTTBC
T ss_pred hhhhhc-------cCCccceEEEEEeecCCeeEEEEEEecCCCCCcEEEEeCCCCccHhhhcccCccceEEEecCCCCCC
Confidence 987644 3556789999999999999999999999996699999988999999999999999999999998899
Q ss_pred CHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcCCCceeeeecee
Q psy7785 168 TESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLV 247 (525)
Q Consensus 168 ~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~~~~~leiNPl~ 247 (525)
++.+|++|+.+||+ ++. ++++.+++.+||++|.+++.+++|||||+
T Consensus 148 ~~~~a~~~~~~lG~---------------------------------~g~-~~~l~~~l~~l~~l~~~~~~~~lEINPL~ 193 (397)
T 3ufx_B 148 RPFEAREMVKRAGL---------------------------------EGN-LNKLAQVLVALYRAYEGVDASIAEINPLV 193 (397)
T ss_dssp CHHHHHHHHHHHTC---------------------------------CSC-HHHHHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CHHHHHHHHHHcCC---------------------------------chH-HHHHHHHHHHHHHHHHcCCccEEEeeceE
Confidence 99999999998764 233 89999999999999999998999999999
Q ss_pred EecCCcEEEeeeEEEecCCchhccccccccCCCCCCChHhhhhhccCCceeccCCcEEEEecchhHHHHHHHHHHHcCCC
Q psy7785 248 ETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGE 327 (525)
Q Consensus 248 v~~~g~~~alDa~i~ld~~a~frq~~i~~~~~~~~~~~~E~~a~~~~l~~~~~~~rIaIitnsGG~gvlaaD~~~~~Gl~ 327 (525)
++++|+++|+||++.+||++.|||+++..++|.+++++.|.++.+++++|+++++||||||||||++++++|++..+|++
T Consensus 194 ~~~~g~~~alDaki~~ddnA~~r~~~~~~~~~~~~~~~~e~~a~~~~l~yv~l~g~I~ii~Ng~Gl~~~t~D~i~~~G~~ 273 (397)
T 3ufx_B 194 VTTDGGIVAADAKIVLDDNALFRHPDLAELREVEAEHPLEVEASNYGFAYVKLDGNIGIIGNGAGLVMYTLDLVNRVGGK 273 (397)
T ss_dssp EETTSCEEESSCEEEECGGGGGGCHHHHTTHHHHCSSHHHHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred ECCCCCEEEEEeEEEecCcchhcchhhhhhcCcccCCHhHHHHHHcCCCcccCCCcEEEEecCccHHHHHHHHHHHcCCC
Confidence 99988899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHHh
Q psy7785 328 PANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRILD 407 (525)
Q Consensus 328 ~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~~L~ 407 (525)
++||+|++|+++++.|.++++++++||++|+++||+++++++|+.+|++|+++.++.+.+|||+++|.|++.++++++|+
T Consensus 274 ~aN~lD~gG~a~~e~~~~al~~~l~d~~v~~ilv~i~ggi~~~~~vA~~i~~a~~~~~~~kPvvv~~~G~~~~~~~~~l~ 353 (397)
T 3ufx_B 274 PANFLDIGGGAKADVVYNALKVVLKDPDVKGVFINIFGGITRADEVAKGVIRALEEGLLTKPVVMRVAGTAEEEAKKLLE 353 (397)
T ss_dssp BSEEEECCSCCCHHHHHHHHHHHHTCTTCCEEEEEEEEEEEESHHHHHHHHHHHTTTCCCSCEEEEEEEECHHHHHHHTT
T ss_pred cCCcEecCCCCCHHHHHHHHHHHHcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHhhCCCCcEEEEccCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999998899999999999999887555899999999988888999999
Q ss_pred hCCCCccccCCHHHHHHHHHHhhc
Q psy7785 408 ESKLPLIFASDLDEAASLVNACKS 431 (525)
Q Consensus 408 ~~Gvpvf~~~s~~~Av~Al~~l~~ 431 (525)
+.|||+| ++|++|++++.++++
T Consensus 354 ~~gip~~--~~~e~Aa~~~~~l~~ 375 (397)
T 3ufx_B 354 GKPVYMY--PTSIEAAKVTVAMKG 375 (397)
T ss_dssp TSSEEEC--SSHHHHHHHHHHSCC
T ss_pred hCCCccc--CCHHHHHHHHHHHHH
Confidence 9999999 999999999998765
No 3
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=100.00 E-value=9.3e-73 Score=593.51 Aligned_cols=379 Identities=41% Similarity=0.661 Sum_probs=357.9
Q ss_pred ccHHhhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCc-EEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHH
Q psy7785 11 NFSYLVKP---VSTVHSTDKVCLEDARTATNILKDLNFKE-YVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILE 86 (525)
Q Consensus 11 ~~e~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~P-vVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~ 86 (525)
+.||++|+ +||||+|++.++++++|+.++++++|| | ||||++...+|||| .|||+++.|+++++++++
T Consensus 3 l~E~~aK~lL~~~GIpvp~~~~~~s~eea~~aa~~lG~-P~vVvK~~~~~ggrg~-------~gGV~l~~s~eel~~a~~ 74 (388)
T 2nu8_B 3 LHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGA-GPWVVKCQVHAGGRGK-------AGGVKVVNSKEDIRAFAE 74 (388)
T ss_dssp CCHHHHHHHHHHTTCCCCCEEEESSHHHHHHHHHHHCS-SCEEEEECCSSSCTTT-------TTCEEEECSHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcCCCCeeEECCHHHHHHHHHHhCC-CeEEEEEecCCCCCCc-------cCCEEEECCHHHHHHHHH
Confidence 57899999 899999999999999999999999997 9 99999998888887 799999999999999999
Q ss_pred HHhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEEEecCCCCC
Q psy7785 87 KMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQG 166 (525)
Q Consensus 87 ~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~~l~p~~~ 166 (525)
+++++...++++++.|..+++|+||+|+++++|+|+++.+|+.|++|+++||..||++||.+++++||++.+++++|..+
T Consensus 75 ~~~~~~~~t~q~g~~g~~~~~vlVEe~v~~~~E~~v~v~~D~~~g~pvi~~~~~GGv~iE~v~~~~pd~i~~~~i~P~~g 154 (388)
T 2nu8_B 75 NWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTG 154 (388)
T ss_dssp HHTTSEECCTTSCTTCEECCCEEEEECCCEEEEEEEEEEEETTTTEEEEEEESCTTSCHHHHHHHCGGGEEEEECBTTTB
T ss_pred HHhhhhhhccccCCCCcccceEEEEEccccCCcEEEEEEEecccCCcEEEEeCCCCcchhhccccCCceEEEEecCCCCC
Confidence 99987665666666776688999999999999999999999999449999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcCCCceeeeece
Q psy7785 167 ITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPL 246 (525)
Q Consensus 167 l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~~~~~leiNPl 246 (525)
+++.++++|+.+||+ ++.+++++++++.+||++|.+.+++++|||||
T Consensus 155 l~~~~a~~~~~~lG~---------------------------------~~~~~~~~~~~l~~l~~~~~~~d~~~lEINPl 201 (388)
T 2nu8_B 155 PMPYQGRELAFKLGL---------------------------------EGKLVQQFTKIFMGLATIFLERDLALIEINPL 201 (388)
T ss_dssp CCHHHHHHHHHHTTC---------------------------------CTHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred CCHHHHHHHHHHcCC---------------------------------CHHHHHHHHHHHHHHHHHHHhCCEEEEEecce
Confidence 999999999998765 55699999999999999999999999999999
Q ss_pred eEecCCcEEEeeeEEEecCCchhccccccccCCCCCCChHhhhhhccCCceeccCCcEEEEecchhHHHHHHHHHHHcCC
Q psy7785 247 VETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGG 326 (525)
Q Consensus 247 ~v~~~g~~~alDa~i~ld~~a~frq~~i~~~~~~~~~~~~E~~a~~~~l~~~~~~~rIaIitnsGG~gvlaaD~~~~~Gl 326 (525)
+++++|+++|+|+++.+|++|.|||++|..+++.++++++|..+..++++|++++||||+|+||||++|+++|.+..+|+
T Consensus 202 ~~~~~g~~~alDaki~~dd~a~~r~~~~~~~~~~~~~~~~e~~a~~~~l~yv~l~G~Ig~~~nGaGl~m~t~D~i~~~Gg 281 (388)
T 2nu8_B 202 VITKQGDLICLDGKLGADGNALFRQPDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGG 281 (388)
T ss_dssp EEETTSCEEESCCEEEECGGGGGGCHHHHHHCCGGGSCHHHHHHHHTTCEEEECSSSEEEEESSHHHHHHHHHHHHHTTC
T ss_pred EEcCCCCEEEEeeEEEeCCchhccCcchhhhcCccccChhHHHHHHhcCCccCCCCEEEEEeCCCchhhhhhHHHHHcCC
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHH
Q psy7785 327 EPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRIL 406 (525)
Q Consensus 327 ~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~~L 406 (525)
+|+||+|++|+++.+++.++++++++||+||++|||+++|+++|+.+|++|+++.++.+.+||||+++.|++.++++++|
T Consensus 282 ~~aNflD~gG~a~~~~~~~~~~~il~d~~v~~ilvni~ggi~~~~~vA~gii~a~~~~~~~~pivvrl~G~n~~~g~~~l 361 (388)
T 2nu8_B 282 EPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKL 361 (388)
T ss_dssp CBCEEEECCSCCCHHHHHHHHHHHHTSTTCCEEEEEEESCSSCHHHHHHHHHHHHHHHTCCSCEEEEEESTTHHHHHHHH
T ss_pred CcCceeEecCCCCHHHHHHHHHHHhcCCCCCEEEEEecCCcCCchHHHHHHHHHHHhcCCCCeEEEEeCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998866789999999999999999999
Q ss_pred hhCCCCccccCCHHHHHHHHHHhh
Q psy7785 407 DESKLPLIFASDLDEAASLVNACK 430 (525)
Q Consensus 407 ~~~Gvpvf~~~s~~~Av~Al~~l~ 430 (525)
++.|+|+|.++++++|++++.+++
T Consensus 362 ~~~g~~~~~~~~~~~aa~~~v~~~ 385 (388)
T 2nu8_B 362 ADSGLNIIAAKGLTDAAQQVVAAV 385 (388)
T ss_dssp HTTCSSEEECSSHHHHHHHHHHHT
T ss_pred HHCCCceecCCCHHHHHHHHHHHh
Confidence 999999999999999999988765
No 4
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=100.00 E-value=6.9e-65 Score=536.29 Aligned_cols=370 Identities=22% Similarity=0.283 Sum_probs=316.5
Q ss_pred hccccHHhhhh---hCCC---C---CCCccccCCH---HHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEe
Q psy7785 8 QIANFSYLVKP---VSTV---H---STDKVCLEDA---RTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFT 75 (525)
Q Consensus 8 ~~~~~e~~~k~---~~GI---p---vp~~~~~~~~---eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~ 75 (525)
+....||++|+ +||+ | .+++.+++++ +||.++++++|.+|||||+|++++|||| +|||+++
T Consensus 3 ~k~i~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~~a~~lg~~pvVvKaqv~~ggRgk-------~GGV~l~ 75 (425)
T 3mwd_A 3 AKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNLVVKPDQLIKRRGK-------LGLVGVN 75 (425)
T ss_dssp EEEECHHHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHHHCGGGGTSCEEEEECSSCSCTTT-------TTCCEEE
T ss_pred chhHhHHHHHHHHHHhccccCCccCCcceEEeCCCCCHHHHHHHHHHhCCCCEEEEeccccCCCCc-------CCeEEEE
Confidence 35789999999 7888 4 3347677655 9999999999833999999999999988 8999999
Q ss_pred CCcccHHHHHHHHhccccccccCCCCCcccCeEEEEeeeCC--ceeEEEEEEEcCCCCccEEEecCCCCcccccccccCC
Q psy7785 76 NNVQDIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNI--TRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTP 153 (525)
Q Consensus 76 ~~~eea~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~~~~--~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~ 153 (525)
.|++|+++++++|+++... ++..+..+++|+||+|+++ ++|+|+|+++||. ||+|+||..||++||.++++++
T Consensus 76 ~s~eev~~aa~~ml~~~~~---~~~~~~~v~~vlVe~~~~~~~~~E~ylgi~~Dr~--gpvI~~s~~GGv~IE~vad~~~ 150 (425)
T 3mwd_A 76 LTLDGVKSWLKPRLGQEAT---VGKATGFLKNFLIEPFVPHSQAEEFYVCIYATRE--GDYVLFHHEGGVDVGDVDAKAQ 150 (425)
T ss_dssp ECHHHHHHHHTTTTTCEEE---ETTEEEECCCEEEEECCCCCGGGEEEEEEEEETT--EEEEEEESSCSTTCCSHHHHSE
T ss_pred CCHHHHHHHHHHHHhhhhh---ccCCCceEEEEEEEecccCCCCceEEEEEEecCC--CCEEEEECCCCccHhHhhcccc
Confidence 9999999999999987652 2223445899999999975 5999999999998 8999999899999999997543
Q ss_pred CeEEEEecCCCCCCCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHH
Q psy7785 154 HLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLF 233 (525)
Q Consensus 154 ~~~~~~~l~p~~~l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~ 233 (525)
+++++|..+++..+++ .. ++.+ +|+.+++++++++.+||++|
T Consensus 151 ----~~~i~~~~~l~~~~~~---~~-----------------ll~g--------------~~~~d~~~la~~l~~L~~lf 192 (425)
T 3mwd_A 151 ----KLLVGVDEKLNPEDIK---KH-----------------LLVH--------------APEDKKEILASFISGLFNFY 192 (425)
T ss_dssp ----EEEEETTCCCCHHHHH---HT-----------------TTTT--------------SCTTTHHHHHHHHHHHHHHH
T ss_pred ----eEecCCccccCHHHHH---HH-----------------HHcC--------------CcHHHHHHHHHHHHHHHHHH
Confidence 5678877777766553 11 2222 25679999999999999999
Q ss_pred hcCCCceeeeeceeEecCCcEEEeeeEEEecCCchhcccccccc-CCC----CCCChHhhhhh--------ccCCceecc
Q psy7785 234 LSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKNIFSQ-NEV----SESDPREVDAS--------KYNLNYVGM 300 (525)
Q Consensus 234 ~~~~~~~leiNPl~v~~~g~~~alDa~i~ld~~a~frq~~i~~~-~~~----~~~~~~E~~a~--------~~~l~~~~~ 300 (525)
.+++++++|||||+++++| ++|+|||+.+||||.|||+..+.. ++. ++.+++|..+. +++|+|+++
T Consensus 193 ~d~d~~~lEINPLvvt~~g-v~AlDAki~lDDnA~fR~~~~~~~~~~~~~~~~~~~~~E~~~~e~~a~~~~~~~l~yv~l 271 (425)
T 3mwd_A 193 EDLYFTYLEINPLVVTKDG-VYVLDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNP 271 (425)
T ss_dssp HHTTEEEEEEEEEEEETTE-EEECCEEEEEEGGGHHHHHHHHCSCCCCCCSSSCCCHHHHHHHHHHHTSSSEEEEEESCT
T ss_pred HhCCccEEEeeeeEEcCCc-eEEEeceeecccchhhhChhhhhhhhccccccccCChhhhhhhhhhhhhhhccCccEEec
Confidence 9999999999999999988 999999999999999999875543 333 45678876553 568999999
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCC--CCCCeeeecCCCCHHHHHH----HHHHHhcCCCccEEEEEecccccChHHHH
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGG--EPANFLDVGGGVNEESIIQ----AFRIISSDSNVKCILVNVFGGIVNCATIA 374 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl--~~aNPlDl~g~a~~~~~~~----al~~ll~dp~vd~vlv~~~~~~~~~~~ia 374 (525)
.|+||+|+||||++|.++|++..+|+ +|+||+|++|+++.+++++ +++++++||+|+++|||+++|+++|+.+|
T Consensus 272 dG~Ig~mvNGaGlamat~D~i~~~Gg~~~pANflD~gG~a~~e~v~~~~~~~l~ii~~d~~vk~i~vnIfGGI~~cd~vA 351 (425)
T 3mwd_A 272 KGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNVA 351 (425)
T ss_dssp TCSEEECCBSHHHHHHHHHHHHHTTCGGGBCEEEEEESCCCHHHHHHHHHHHHHHTTSSCCTTCEEEEECBCBCSSSCHH
T ss_pred CCeEEEEecCchHHHHHHHHHHHcCCCcCCcceEEecCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCcccHHHHH
Confidence 99999999999999999999999999 7999999999999998766 59999999999999999999999999999
Q ss_pred ---HHHHHHHHhc-----CCCCcEEEEeCCcchHHHHHHHhhCC----CCccccCC-HHHHHHHHHHhh
Q psy7785 375 ---KGLVNACKSF-----KLSIPLVVRLEGTNVQEGKRILDESK----LPLIFASD-LDEAASLVNACK 430 (525)
Q Consensus 375 ---~~i~~a~~~~-----~~~kPivv~~~g~~~~~~~~~L~~~G----vpvf~~~s-~~~Av~Al~~l~ 430 (525)
++|+++.+++ ..++||||++.|++.++++++|++.| +|+| .. |+.++..+..++
T Consensus 352 ~t~~GIi~A~~~~~~~~~~~~~PivVRl~Gtn~~eg~~il~~~g~~lgip~~--~~gpe~~~~~i~~~a 418 (425)
T 3mwd_A 352 ATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIH--VFGTETHMTAIVGMA 418 (425)
T ss_dssp HHHHHHHHHHHHTHHHHHHTTEEEEEECBSTTHHHHHHHHHHHHHHHTCCEE--EECTTSCTTHHHHHH
T ss_pred HHHhHHHHHHHHhhhccccCCCcEEEECCcCCHHHHHHHHHhCCcccCCceE--EeCccchHHHHHHHH
Confidence 9999999874 36899999999999999999999987 9988 43 777788777664
No 5
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=5.3e-60 Score=530.75 Aligned_cols=356 Identities=23% Similarity=0.299 Sum_probs=309.4
Q ss_pred hccccHHhhhh---hCCCC------CCCccccCCH---HHHHHHHHhcC-CCcEEEEEeeccccCCCCCccCCCcceEEE
Q psy7785 8 QIANFSYLVKP---VSTVH------STDKVCLEDA---RTATNILKDLN-FKEYVIKAQILAGGRGLGHFDNGFKSGVHF 74 (525)
Q Consensus 8 ~~~~~e~~~k~---~~GIp------vp~~~~~~~~---eea~~~a~~lg-~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l 74 (525)
+....||++|+ +|++| .+++.+++++ +||.++++++| + |||||+|++++|||| .|||++
T Consensus 3 ~k~i~Ey~aK~ll~~~~~~~~~~~~~~~~~~v~~~~~~~eA~~aa~~lg~~-pvVvKaQv~~GgRGK-------aGGVkL 74 (829)
T 3pff_A 3 AKAISEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQ-NLVVKPDQLIKRRGK-------LGLVGV 74 (829)
T ss_dssp EEEECHHHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHHHCTHHHHS-CEEEEECSSCSCTTT-------TTCCEE
T ss_pred chhHhHHHHHHHHHHhCccccccccCCceEEeCCCCCHHHHHHHHHHhCCC-CEEEEecccccCCCc-------CCeEEE
Confidence 35789999999 89998 5677777766 88999999998 6 999999999999999 899999
Q ss_pred eCCcccHHHHHHHHhccccccccCCCCCcccCeEEEEeeeCC--ceeEEEEEEEcCCCCccEEEecCCCCcccccccccC
Q psy7785 75 TNNVQDIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNI--TRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKT 152 (525)
Q Consensus 75 ~~~~eea~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~~~~--~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~ 152 (525)
+.|++|+++++++|+++... ++..+..+++|+||+|+++ ++|+|+|+++||. ||+|+||..||++||.++++.
T Consensus 75 ~~s~eEa~~aa~~iLg~~~~---~~~p~~~V~gvLVE~m~~~~~~~ElYvgI~~Dr~--gpvIm~s~eGGvdIE~vad~~ 149 (829)
T 3pff_A 75 NLTLDGVKSWLKPRLGQEAT---VGKATGFLKNFLIEPFVPHSQAEEFYVCIYATRE--GDYVLFHHEGGVDVGDVDAKA 149 (829)
T ss_dssp EECHHHHHHHHTTTTTCEEE---ETTEEEECCCEEEEECCCCCGGGEEEEEEEEETT--EEEEEEESSCSTTCCCHHHHS
T ss_pred ECCHHHHHHHHHHHHHHHHh---hcCCCceEEEEEEEecccCCCccEEEEEEEecCC--CCEEEEECCCCcchhhhhhhc
Confidence 99999999999999988652 1223445899999999975 5999999999998 899999999999999999743
Q ss_pred CCeEEEEecCCCCCCCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHH
Q psy7785 153 PHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNL 232 (525)
Q Consensus 153 ~~~~~~~~l~p~~~l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l 232 (525)
.+++++|..+++.+++++ + ++.+| ++.++++++++|.+||++
T Consensus 150 ----~~~~I~p~~gl~~~~a~~---~-----------------ll~g~--------------~~~d~~ala~~L~~Ly~l 191 (829)
T 3pff_A 150 ----QKLLVGVDEKLNPEDIKK---H-----------------LLVHA--------------PEDKKEILASFISGLFNF 191 (829)
T ss_dssp ----EEEEEETTCCCCHHHHHH---T-----------------TTTTS--------------CGGGHHHHHHHHHHHHHH
T ss_pred ----eEEecCCccccCHHHHHH---H-----------------HHcCC--------------CHHHHHHHHHHHHHHHHH
Confidence 468899988888877742 1 12222 566999999999999999
Q ss_pred HhcCCCceeeeeceeEecCCcEEEeeeEEEecCCchhcccccccc-CCC----CCCChHhhhhh--------ccCCceec
Q psy7785 233 FLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKNIFSQ-NEV----SESDPREVDAS--------KYNLNYVG 299 (525)
Q Consensus 233 ~~~~~~~~leiNPl~v~~~g~~~alDa~i~ld~~a~frq~~i~~~-~~~----~~~~~~E~~a~--------~~~l~~~~ 299 (525)
|.++|++++|||||+++++| ++|+||||.+||||.|||+..+.. ++. ++.+++|..+. +++|+|++
T Consensus 192 f~d~d~t~lEINPLvvt~dg-v~ALDAKi~lDDnA~fR~~~~~~~~~~~~~~~~~~~~~E~~~~e~~ak~~a~~~l~yv~ 270 (829)
T 3pff_A 192 YEDLYFTYLEINPLVVTKDG-VYVLDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLN 270 (829)
T ss_dssp HHHTTEEEEEEEEEEEETTE-EEECCCEEEEEGGGHHHHHHHHCSCCCCCCSSCCCCHHHHHHHHHHHTSSSEEEEEESC
T ss_pred HHhCCccEEEeeceEecCCc-eEEEeceeeeccchhhhCchhhhhhhccccccccCChhhhhhhhhhhhhccccCccEEe
Confidence 99999999999999999988 999999999999999999875543 332 46777776542 46899999
Q ss_pred cCCcEEEEecchhHHHHHHHHHHHcCC--CCCCeeeecCCCCHHHHHHH----HHHHhcCCCccEEEEEecccccChHHH
Q psy7785 300 MDGNIGCLVNGAGLAMATMDIIKLHGG--EPANFLDVGGGVNEESIIQA----FRIISSDSNVKCILVNVFGGIVNCATI 373 (525)
Q Consensus 300 ~~~rIaIitnsGG~gvlaaD~~~~~Gl--~~aNPlDl~g~a~~~~~~~a----l~~ll~dp~vd~vlv~~~~~~~~~~~i 373 (525)
++|+||+|.||+|++|.++|.+..+|+ +|+||+|++|+++.++++++ ++++++||+|+++|||+++|+++|+.+
T Consensus 271 ldG~Ig~mvNGaGlamaTmD~I~~~Gg~~~pANFlDvGGga~~e~v~~~~~~~l~ii~~d~~vk~ilvNIfGGI~~cd~V 350 (829)
T 3pff_A 271 PKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIANFTNV 350 (829)
T ss_dssp TTCSEEECCBSHHHHHHHHHHHHHTTCTTTBCEEEEEESCCCHHHHHHHHHHHHHHTTSSCCTTCEEEEECBCBCSSCCH
T ss_pred cCCeEEeeccCchHHHHHHHHHHHcCCCCCCceeEEecCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCccchHHH
Confidence 999999999999999999999999999 69999999999999987666 899999999999999999999999999
Q ss_pred H---HHHHHHHHhc-----CCCCcEEEEeCCcchHHHHHHHhhCC----CCccc
Q psy7785 374 A---KGLVNACKSF-----KLSIPLVVRLEGTNVQEGKRILDESK----LPLIF 415 (525)
Q Consensus 374 a---~~i~~a~~~~-----~~~kPivv~~~g~~~~~~~~~L~~~G----vpvf~ 415 (525)
| ++|+++++++ +.++||||++.|++.++++++|++.| +|++.
T Consensus 351 A~tf~GIi~A~k~~~~~~~~~~vPiVVRl~GtN~eeg~~il~~~g~~lgl~i~v 404 (829)
T 3pff_A 351 AATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIPIHV 404 (829)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTEEEEEECBSTTHHHHHHHHHHHHHHHCCCEEE
T ss_pred HHHHhHHHHHHHHhhhhcccCCceEEEECCCCCHHHHHHHHHhCccccCCcEEE
Confidence 9 9999998874 35899999999999999999999875 88753
No 6
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=4.8e-33 Score=273.76 Aligned_cols=216 Identities=15% Similarity=0.155 Sum_probs=181.4
Q ss_pred hhhc-cccHHhhhh---hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeec-cccCCCCCccCCCcceEEEe-CCcc
Q psy7785 6 NQQI-ANFSYLVKP---VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQIL-AGGRGLGHFDNGFKSGVHFT-NNVQ 79 (525)
Q Consensus 6 ~~~~-~~~e~~~k~---~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~-~~~rgK~~~~~~~~GGV~l~-~~~e 79 (525)
.+++ ...++++|+ +||||+|++.++++.+|+.++++++|| |||||++.. .+|||+ .|||.++ .|++
T Consensus 14 ~~~~~~l~k~~~k~ll~~~GIp~p~~~~~~~~~ea~~~a~~lg~-PvvvKp~~~~~~~r~~-------~gGv~~~v~~~~ 85 (238)
T 1wr2_A 14 KQGRTAMVEYEAKQVLKAYGLPVPEEKLAKTLDEALEYAKEIGY-PVVLKLMSPQILHKSD-------AKVVMLNIKNEE 85 (238)
T ss_dssp HTTCCEECHHHHHHHHHTTTCCCCCCEEESSHHHHHHHHHHHCS-SEEEEEECTTCCCHHH-------HTCEEEEECSHH
T ss_pred hcCcCCCCHHHHHHHHHHcCcCCCCeEEeCCHHHHHHHHHHhCC-CEEEEEccCCCCcCCc-------cCCEEEeCCCHH
Confidence 3444 456789998 899999999999999999999999997 999999876 566655 7999995 7999
Q ss_pred cHHHHHHHHhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEecCCCCcccccccccCCCeEEEE
Q psy7785 80 DIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTI 159 (525)
Q Consensus 80 ea~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g~~GGv~iE~~~~~~~~~~~~~ 159 (525)
++++++++++.....+ ..+..+.+|+||+|+++++|+++++..|+.| ||++++| .||+++|.+.+ . ++
T Consensus 86 el~~a~~~~~~~~~~~----~~~~~~~~vlVEe~i~~g~E~~v~v~~d~~~-g~v~~~~-~Gg~~iE~~~d----~--~~ 153 (238)
T 1wr2_A 86 ELKKKWEEIHENAKKY----RPDAEILGVLVAPMLKPGREVIIGVTEDPQF-GHAIMFG-LGGIFVEILKD----V--TF 153 (238)
T ss_dssp HHHHHHHHHHHHHHHH----CTTCCCCEEEEEECCCCCEEEEEEEEEETTT-EEEEEEE-ECSTTHHHHCC----C--EE
T ss_pred HHHHHHHHHHHhhhhh----CCCCccceEEEEECCCCCeEEEEEEEeCCCC-CcEEEEe-cCCceeeeecc----e--ee
Confidence 9999999998754311 1244468999999999899999999999998 9999999 99999998864 3 45
Q ss_pred ecCCCCCCCHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHhhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHhcCC--
Q psy7785 160 PIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVD-- 237 (525)
Q Consensus 160 ~l~p~~~l~~~~a~~~~~~l~~~~~~~~~~~~~~~~l~~~~r~~~~~~~~~~~~~~~~d~~~l~~~l~~l~~l~~~~~-- 237 (525)
.++| ++..++++|++.++. ..++.|+|| .++.|++++.+++.+||+++.+.+
T Consensus 154 ~~~P---l~~~~~~~~~~~~~~------------~~~~~g~~G-----------~~~~d~~~l~~~l~~l~~~~~~~~~~ 207 (238)
T 1wr2_A 154 RLVP---ITEKDARKMIQEIKA------------YPILAGARG-----------EEPADIDAIVDMLLKVSKLVDDLKDY 207 (238)
T ss_dssp EESS---CCHHHHHHHHHTSTT------------HHHHHCC-------------CCCBCHHHHHHHHHHHHHHHHHTTTT
T ss_pred ecCC---CCHHHHHHHHHHHHH------------HHHhcCCCC-----------CChhhHHHHHHHHHHHHHHHHcCCCC
Confidence 6677 999999999998753 345556655 478899999999999999999875
Q ss_pred CceeeeeceeEecCC-cEEEeeeEEEecCCc
Q psy7785 238 ATQLEINPLVETDER-EVISVDAKINFDDNA 267 (525)
Q Consensus 238 ~~~leiNPl~v~~~g-~~~alDa~i~ld~~a 267 (525)
+.++|||||+++++| +++|+||++++|+|.
T Consensus 208 ~~~lEINPl~~~~~g~~~~alDa~~~~~~~~ 238 (238)
T 1wr2_A 208 IKEMDLNPVFVYNKGEGAVIVDSRIILKPKD 238 (238)
T ss_dssp EEEEEEEEEEECBTTSCEEECCEEEEECCC-
T ss_pred eEEEeccCeEEeCCCCcEEEEEEEEEeCCCC
Confidence 999999999999986 699999999999873
No 7
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=99.87 E-value=3.6e-22 Score=214.01 Aligned_cols=159 Identities=18% Similarity=0.264 Sum_probs=134.7
Q ss_pred CchhccccccccCCCCCCChHhhhhhccCCceecc--CCcEEEEecchhHHHHHHHHHHHcCCC----------------
Q psy7785 266 NAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGM--DGNIGCLVNGAGLAMATMDIIKLHGGE---------------- 327 (525)
Q Consensus 266 ~a~frq~~i~~~~~~~~~~~~E~~a~~~~l~~~~~--~~rIaIitnsGG~gvlaaD~~~~~Gl~---------------- 327 (525)
++.|||+|+++++ ++.|+.+....|+| ++ ++||+|||||||+|++++|+++.+|++
T Consensus 262 ~AafRqaGv~~v~-----~~~El~~~~~~l~~-~~~~g~rvaiitngGG~~~laaD~~~~~Gl~l~~l~~~t~~~L~~~l 335 (457)
T 2csu_A 262 EAAFKQSGVLVAN-----TIDEMLSMARAFSQ-PLPRGNKVAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFL 335 (457)
T ss_dssp HHHHHHTTCEEES-----SHHHHHHHHTTTTS-CCCSSSEEEEEESCHHHHHHHHHHHHTTTCEECCCCHHHHHHHHHHS
T ss_pred HHHHHhCCCeEEC-----CHHHHHHHHHHhcC-CCCCCCcEEEEECCHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhC
Confidence 4679999999884 45888888888888 66 689999999999999999999999985
Q ss_pred -----CCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc-c--cChHHHHHHHHHHHHhcCCCCcEEEEeC-Ccc
Q psy7785 328 -----PANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG-I--VNCATIAKGLVNACKSFKLSIPLVVRLE-GTN 398 (525)
Q Consensus 328 -----~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~-~--~~~~~ia~~i~~a~~~~~~~kPivv~~~-g~~ 398 (525)
++||+|++|+++++.|.++++++++||++|++++++..+ . ..++.+++.++++.++...+||++++|. |++
T Consensus 336 p~~~~~~NPlDl~g~a~~~~~~~al~~~l~dp~vd~vlv~~~~~~~Gg~~~~~~a~~i~~al~~~~~~kPvvv~~~~g~~ 415 (457)
T 2csu_A 336 PPMAAVKNPVDMIASARGEDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYV 415 (457)
T ss_dssp CTTCEESSEEECCTTCCHHHHHHHHHHHHHSTTCSEEEEEEECCCSTTCCSSHHHHHHHHHHHHHCCCCCEEEEEECTTT
T ss_pred ccccccCCCeeCCCCCCHHHHHHHHHHHhcCCCCCEEEEEccccccccCCchhHHHHHHHHHHHhcCCCCEEEEeCCCcc
Confidence 689999999999999999999999999999999976322 1 3356677778777665335799998654 456
Q ss_pred hHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcc
Q psy7785 399 VQEGKRILDESKLPLIFASDLDEAASLVNACKSF 432 (525)
Q Consensus 399 ~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~ 432 (525)
.++.+++|+++|||+| ++|++|++++.++.++
T Consensus 416 ~~~~~~~L~~~Gip~~--~spe~Av~al~~l~~~ 447 (457)
T 2csu_A 416 SEKAKELLEKNGIPTY--ERPEDVASAAYALVEQ 447 (457)
T ss_dssp THHHHHHHHTTTCCEE--SSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCCCcc--CCHHHHHHHHHHHHHH
Confidence 6788999999999999 9999999999987654
No 8
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=99.72 E-value=1.5e-17 Score=177.76 Aligned_cols=166 Identities=20% Similarity=0.192 Sum_probs=127.5
Q ss_pred eceeEecCCcEEEeeeEEEecCCchhccccccccCCCCCCChHhhhhhccCCcee--------cc-CCcEEEEecchhHH
Q psy7785 244 NPLVETDEREVISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYV--------GM-DGNIGCLVNGAGLA 314 (525)
Q Consensus 244 NPl~v~~~g~~~alDa~i~ld~~a~frq~~i~~~~~~~~~~~~E~~a~~~~l~~~--------~~-~~rIaIitnsGG~g 314 (525)
-|+++...| ...+-|||.|+++++ +.+|+......|... .+ ++||+|||||||+|
T Consensus 199 KPVV~~k~G-----------rs~~g~r~~Gvirv~-----~~~el~~~a~~l~~~~~~~~~qp~~~G~rvaivtn~Gg~g 262 (480)
T 3dmy_A 199 KPTVALFLG-----------YTPAVARDENVWFAS-----SLDEAARLACLLSRVTARRNAIAPVSSGFICGLYTGGTLA 262 (480)
T ss_dssp SCEEEEETT-----------CCCSSSEETTEEEES-----SHHHHHHHHHHHHHHHHHHHHHCCCSCCEEEEEESCHHHH
T ss_pred CCEEEEEeC-----------CCCcccccCCEEEEC-----CHHHHHHHHHHHhcCccccccCCCCCCCeEEEEECCHHHH
Confidence 378887777 222239999999995 447777665555543 12 57999999999999
Q ss_pred HHHHHHHHHcCCC-----------------------------CCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEe--
Q psy7785 315 MATMDIIKLHGGE-----------------------------PANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNV-- 363 (525)
Q Consensus 315 vlaaD~~~~~Gl~-----------------------------~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~-- 363 (525)
++++|.|.+ |+. .+||+|++ +++.|.++++.+++||++|++++.+
T Consensus 263 vlaaD~~~~-gl~l~~ls~~t~~~l~~~~~~~l~~~lp~~~s~~NPvD~~---d~~~~~~al~~~l~D~~vd~vlv~~v~ 338 (480)
T 3dmy_A 263 AEAAGLLAG-HLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPHPMI---DPTLRNQLIADLGAKPQVRVLLLDVVI 338 (480)
T ss_dssp HHHHHHHHH-HTTCC---CCGGGEEEEETTEEEEETTSHHHHTTSCCTTT---CCHHHHHHHHHGGGCTTEEEEEEEEEC
T ss_pred HHHHHHHHh-CCCCCCCCHHHHhhhhhhhhccHHHhCcchhhccCCcCCC---CHHHHHHHHHHHhcCCCCCEEEEEeec
Confidence 999999999 541 46899988 6788999999999999999998843
Q ss_pred -cccccCh-HHHHHHHHHHHHhcCCCCcE-EEEeCC-cc-h----HHHHHHHhhCCCCccccCCHHHHHHHHHHhhc
Q psy7785 364 -FGGIVNC-ATIAKGLVNACKSFKLSIPL-VVRLEG-TN-V----QEGKRILDESKLPLIFASDLDEAASLVNACKS 431 (525)
Q Consensus 364 -~~~~~~~-~~ia~~i~~a~~~~~~~kPi-vv~~~g-~~-~----~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~ 431 (525)
++...+. ..+++.|+++.+....+||+ +++|+| +. . .+.++.|+++|||+| ++|++|++++.++++
T Consensus 339 ~~~~~~d~~~~~a~ai~~~~~~~~~~kp~v~v~~~~g~~~~~~~~~~~~~~L~~aGIp~f--~spe~Av~a~~~l~~ 413 (480)
T 3dmy_A 339 GFGATADPAASLVSAWQKACAARLDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVV--SSLPEATLLAAALIH 413 (480)
T ss_dssp STTSCSCHHHHHHHHHHHHHHTSCTTSCCEEEEEEESCTTSTTCHHHHHHHHHHTTCEEC--SSHHHHHHHHHHHTS
T ss_pred CCCCCCChHHHHHHHHHHHHHhccCCCCeEEEEEecCcccchhhHHHHHHHHHhCCCccc--CCHHHHHHHHHHHHh
Confidence 3334554 88999999987762227994 666654 32 2 235689999999999 999999999999875
No 9
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.1e-09 Score=92.78 Aligned_cols=87 Identities=16% Similarity=0.215 Sum_probs=68.4
Q ss_pred hCCCCCCCcc--ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDKV--CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~--~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
++|||+|++. .+++.+++.++++++|| |+|+|+....+ ++ ||.+..|.+++.++++++......
T Consensus 18 ~~gip~p~~~~~~~~~~~~~~~~~~~~~~-P~vvKp~~~~~--~~---------gv~~v~~~~el~~~~~~~~~~~~~-- 83 (108)
T 2cqy_A 18 KAEVNTIPGFDGVVKDAEEAVRIAREIGY-PVMIKASAGGG--GK---------GMRIAWDDEETRDGFRLSSQEAAS-- 83 (108)
T ss_dssp SSCCCCCSCCCSCBSSHHHHHHHHHHHCS-SEEEEETTSCC--TT---------TCEEESSHHHHHHHHHHHHHHHHH--
T ss_pred HcCCCCCCCcccccCCHHHHHHHHHhcCC-CEEEEECCCCC--Cc---------cEEEeCCHHHHHHHHHHHHHHHHh--
Confidence 8999999998 88999999999999997 99999974432 23 788888999999999988753210
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEE
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCI 124 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv 124 (525)
. .+ ..+++||+|+++.+|+.+++
T Consensus 84 ~---~~--~~~~lvee~i~g~~E~~v~v 106 (108)
T 2cqy_A 84 S---FG--DDRLLIEKFIDNPRHISGPS 106 (108)
T ss_dssp H---TS--SCCEEEEECCSSSSCCCSCC
T ss_pred h---cC--CCcEEEeeccCCCcEEEEEe
Confidence 0 01 25799999999777987765
No 10
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=98.74 E-value=1.1e-07 Score=96.39 Aligned_cols=93 Identities=18% Similarity=0.185 Sum_probs=72.7
Q ss_pred hCCCCCCCccccCCHHHHHHHH----HhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccc
Q psy7785 19 VSTVHSTDKVCLEDARTATNIL----KDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLI 94 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a----~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~ 94 (525)
++|||+|++.++++.+++.+++ +++|| |||||+....++ + ||.+..+.+++.++++++...
T Consensus 117 ~~Gip~p~~~~~~~~~~~~~~~~~~~~~~g~-PvvvKP~~~~~s--~---------Gv~~v~~~~el~~a~~~~~~~--- 181 (317)
T 4eg0_A 117 QTGVPTPPFETVMRGDDYAARATDIVAKLGL-PLFVKPASEGSS--V---------AVLKVKTADALPAALSEAATH--- 181 (317)
T ss_dssp HTTCCCCCEEEEETTSCHHHHHHHHHHHHCS-CEEEEECC----------------CCEEECSGGGHHHHHHHHTTT---
T ss_pred HCCcCCCCEEEEECchhHHHHHHHHHHhcCC-CEEEEeCCCCCC--C---------CEEEECCHHHHHHHHHHHHhC---
Confidence 7999999999999988887777 88997 999999755332 2 677888999999998876321
Q ss_pred cccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 95 TKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 95 ~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
...++||+|++.++|+.+++..|..+ |++.+.
T Consensus 182 ----------~~~~lvEe~i~~G~E~~v~vl~~~~~--~~~~i~ 213 (317)
T 4eg0_A 182 ----------DKIVIVEKSIEGGGEYTACIAGDLDL--PLIKIV 213 (317)
T ss_dssp ----------CSEEEEEECCCSSEEEEEEEETTCCC--CCEEEE
T ss_pred ----------CCeEEEEcCCCCCcEEEEEEECCccc--ceEEEe
Confidence 25799999998789999999988644 555555
No 11
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=98.67 E-value=4.9e-08 Score=103.52 Aligned_cols=97 Identities=20% Similarity=0.268 Sum_probs=79.2
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||+|++..+++.+++.++++++|| |+|||+....+| | ||.+..|.+|+.+++++++.....
T Consensus 117 ~~GIptp~~~~~~~~~ea~~~~~~~g~-PvVvKp~~~~gg--~---------GV~iv~~~~el~~a~~~~~~~~~~---- 180 (431)
T 3mjf_A 117 RHNIPSAEYQNFTDVEAALAYVRQKGA-PIVIKADGLAAG--K---------GVIVAMTQEEAETAVNDMLAGNAF---- 180 (431)
T ss_dssp HTTCSBCCEEEESCHHHHHHHHHHHCS-SEEEEESSSCTT--C---------SEEEECSHHHHHHHHHHHHTTHHH----
T ss_pred HcCCCCCCeEeeCCHHHHHHHHHHcCC-eEEEEECCCCCC--C---------cEEEeCCHHHHHHHHHHHHhhccc----
Confidence 899999999999999999999999997 999999866543 3 788889999999999998743211
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
|.....++||||++ +.|+.+.+..|.. .++.++
T Consensus 181 ---g~~~~~vlvEe~i~-G~E~sv~~~~dg~---~~~~~~ 213 (431)
T 3mjf_A 181 ---GDAGHRIVVEEFLD-GEEASFIVMVDGE---NVLPMA 213 (431)
T ss_dssp ---HCCCCCEEEEECCC-SEEEEEEEEEESS---CEEECC
T ss_pred ---cCCCCeEEEEEeeC-CcEEEEEEEEcCC---EEEEEE
Confidence 11135799999999 7999999999864 355544
No 12
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=98.65 E-value=8e-08 Score=102.22 Aligned_cols=91 Identities=16% Similarity=0.213 Sum_probs=76.4
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||+|++..+++.+++.++++++|| |+|||+....+| | ||.+..|.+|+.+++++++....
T Consensus 133 ~~GIp~p~~~~~~~~~ea~~~~~~~g~-PvVvKp~~~~gg--~---------GV~iv~~~eel~~a~~~~~~~~~----- 195 (442)
T 3lp8_A 133 RYGIPTAKYGYFVDTNSAYKFIDKHKL-PLVVKADGLAQG--K---------GTVICHTHEEAYNAVDAMLVHHK----- 195 (442)
T ss_dssp HHTCCBCCEEEESSHHHHHHHHHHSCS-SEEEEESSCCTT--T---------SEEEESSHHHHHHHHHHHHTSCT-----
T ss_pred HCCCCCCCEEEECCHHHHHHHHHHcCC-cEEEeECCCCCC--C---------eEEEeCCHHHHHHHHHHHHhhcc-----
Confidence 799999999999999999999999997 999999866543 3 78888899999999999875311
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
.|.....++||||++ +.|+.+.+..|..
T Consensus 196 --~g~~~~~vlvEe~i~-G~E~sv~~~~dg~ 223 (442)
T 3lp8_A 196 --FGEAGCAIIIEEFLE-GKEISFFTLVDGS 223 (442)
T ss_dssp --TGGGGSSEEEEECCC-SEEEEEEEEEESS
T ss_pred --cCCCCCeEEEEEeec-CcEEEEEEEECCC
Confidence 122235799999999 7999999999865
No 13
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=98.64 E-value=4.8e-07 Score=94.54 Aligned_cols=92 Identities=14% Similarity=0.245 Sum_probs=74.1
Q ss_pred hCCCCCCCccccCCHH----HHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccc
Q psy7785 19 VSTVHSTDKVCLEDAR----TATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLI 94 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~e----ea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~ 94 (525)
++|||+|++.++++.+ ++.++++++|| |||||+....++ + ||.+..+.+++.+++++++..
T Consensus 169 ~~GIp~p~~~~~~~~~~~~~~~~~~~~~lg~-PvvVKP~~ggss--~---------Gv~~v~~~~el~~a~~~a~~~--- 233 (386)
T 3e5n_A 169 DARLAVAPFVCFDRHTAAHADVDTLIAQLGL-PLFVKPANQGSS--V---------GVSQVRTADAFAAALALALAY--- 233 (386)
T ss_dssp HTTCCBCCEEEEEHHHHTTCCHHHHHHHHCS-SEEEEESBSCSS--T---------TCEEECSGGGHHHHHHHHTTT---
T ss_pred HCCCCCCCEEEEeCcccchhhHHHHHHhcCC-CEEEEECCCCcC--C---------CEEEECCHHHHHHHHHHHHhC---
Confidence 7999999999999888 78888999997 999999755332 2 678888999999998887431
Q ss_pred cccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 95 TKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 95 ~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
...++||++++ ++|+.+++..|+. .+++..|
T Consensus 234 ----------~~~vlVEe~I~-G~E~~v~vl~~~~--~~~~~~g 264 (386)
T 3e5n_A 234 ----------DHKVLVEAAVA-GREIECAVLGNAV--PHASVCG 264 (386)
T ss_dssp ----------CSEEEEEECCC-SEEEEEEEECSSS--CEEEEEE
T ss_pred ----------CCcEEEEcCCC-CeEEEEEEEeCCC--ceEEEeE
Confidence 25799999998 5999999998865 3555444
No 14
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=98.60 E-value=1.9e-07 Score=98.61 Aligned_cols=90 Identities=13% Similarity=0.108 Sum_probs=73.9
Q ss_pred hCCCCCCCccccCCHHHHHHHHHh----cCCCcEEEEEe-eccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccc
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKD----LNFKEYVIKAQ-ILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKL 93 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~----lg~~PvVlK~~-~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~ 93 (525)
++|||+|++..+++.+++.+++++ + | |+|||+. .-.+ || ||.+..|.+++.++++.+-
T Consensus 143 ~~Gip~p~~~~v~~~~e~~~~~~~~~~~~-~-P~VvKp~~~g~~--G~---------Gv~~v~~~~el~~a~~~~~---- 205 (419)
T 4e4t_A 143 ASGVPVAPHVVIESAAALAALDDAALDAV-L-PGILKTARLGYD--GK---------GQVRVSTAREARDAHAALG---- 205 (419)
T ss_dssp HTTCCBCCEEEECSHHHHHTSCHHHHHTT-C-SEEEEESSSCCT--TT---------TEEEECSHHHHHHHHHHTT----
T ss_pred HcCcCCCCeEEECCHHHHHHHHHhhcccc-C-CEEEEecCCCCC--CC---------ceEEECCHHHHHHHHHhcC----
Confidence 799999999999999999998888 9 8 9999995 2222 34 7889999999998887641
Q ss_pred ccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 94 ITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 94 ~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
...++||+|++.++|+.+.+.+|.. |-++.+.
T Consensus 206 -----------~~~~lvEe~i~~~~Eisv~v~~~~~--G~~~~~~ 237 (419)
T 4e4t_A 206 -----------GVPCVLEKRLPLKYEVSALIARGAD--GRSAAFP 237 (419)
T ss_dssp -----------TCCEEEEECCCEEEEEEEEEEECTT--SCEEECC
T ss_pred -----------CCcEEEeecCCCCeEEEEEEEEcCC--CCEEEEe
Confidence 1458999999988999999999975 4566665
No 15
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=98.56 E-value=1.6e-06 Score=90.29 Aligned_cols=92 Identities=12% Similarity=0.161 Sum_probs=74.4
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||+|++..+++.+++.++++++|| |+|||+....+ .|+ ||.+..+.+++.++++.+.
T Consensus 122 ~~Gip~p~~~~~~~~~~~~~~~~~~g~-P~vvKp~~~~~-~g~---------Gv~~v~~~~el~~~~~~~~--------- 181 (389)
T 3q2o_A 122 KAGLPVATYRLVQNQEQLTEAIAELSY-PSVLKTTTGGY-DGK---------GQVVLRSEADVDEARKLAN--------- 181 (389)
T ss_dssp HTTCCCCCEEEESSHHHHHHHHHHHCS-SEEEEESSCCS-SSC---------CEEEESSGGGHHHHHHHHH---------
T ss_pred HCCCCCCCeEEECCHHHHHHHHHhcCC-CEEEEeCCCCC-CCC---------CeEEECCHHHHHHHHHhcC---------
Confidence 799999999999999999999999997 99999954321 123 7888899999998887652
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
-..++||+|++++.|+.+.+.+|.. |-++.++
T Consensus 182 ------~~~~lvEe~i~g~~E~~v~~~~~~~--G~~~~~~ 213 (389)
T 3q2o_A 182 ------AAECILEKWVPFEKEVSVIVIRSVS--GETKVFP 213 (389)
T ss_dssp ------HSCEEEEECCCCSEEEEEEEEECTT--CCEEECC
T ss_pred ------CCCEEEEecccCceEEEEEEEEcCC--CCEEEec
Confidence 1358999999978999999999864 3444444
No 16
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=98.50 E-value=8.1e-07 Score=93.27 Aligned_cols=84 Identities=18% Similarity=0.225 Sum_probs=71.5
Q ss_pred hCCCCCCCccccC--CHHHHHHHHHhcCCCcEEEEEeecc-ccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccc
Q psy7785 19 VSTVHSTDKVCLE--DARTATNILKDLNFKEYVIKAQILA-GGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT 95 (525)
Q Consensus 19 ~~GIpvp~~~~~~--~~eea~~~a~~lg~~PvVlK~~~~~-~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~ 95 (525)
++|||+|++..++ +.+++.++++++|| |+|||+.... + || ||.+..+.+++.++++.+.
T Consensus 133 ~~Gip~p~~~~~~~~~~~~~~~~~~~~g~-P~VvKp~~gg~~--g~---------Gv~~v~~~~el~~a~~~~~------ 194 (403)
T 3k5i_A 133 KYGIPMAEHRELVENTPAELAKVGEQLGY-PLMLKSKTMAYD--GR---------GNFRVNSQDDIPEALEALK------ 194 (403)
T ss_dssp TTTCCBCCEEEESSCCHHHHHHHHHHHCS-SEEEEESSSCCT--TT---------TEEEECSTTSHHHHHHHTT------
T ss_pred HCCcCCCCEEEEcCCCHHHHHHHHHHhCC-CEEEEeCCCCcC--CC---------CEEEECCHHHHHHHHHhcC------
Confidence 7999999999999 99999999999997 9999996432 3 34 7889899999998887641
Q ss_pred ccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 96 KQTPKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 96 ~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
-..++||+|++.+.|+.+.+.+|+.
T Consensus 195 ---------~~~~lvEe~i~~~~E~sv~v~~~~~ 219 (403)
T 3k5i_A 195 ---------DRPLYAEKWAYFKMELAVIVVKTKD 219 (403)
T ss_dssp ---------TSCEEEEECCCEEEEEEEEEEECSS
T ss_pred ---------CCcEEEecCCCCCeEEEEEEEEcCC
Confidence 1469999999988999999999964
No 17
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=98.50 E-value=2.2e-07 Score=95.94 Aligned_cols=91 Identities=15% Similarity=0.149 Sum_probs=73.4
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeecc-ccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILA-GGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ 97 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~-~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~ 97 (525)
++|||+|++..+++.+++.++++++|| |+|+|+.... +| + ||.+..|.+++.++++++.
T Consensus 106 ~~gip~p~~~~~~~~~~~~~~~~~~g~-P~vvKp~~~~~~g--~---------Gv~~v~~~~el~~~~~~~~-------- 165 (369)
T 3aw8_A 106 GLGVPTPPFHPVDGPEDLEEGLKRVGL-PALLKTRRGGYDG--K---------GQALVRTEEEALEALKALG-------- 165 (369)
T ss_dssp HHTCCCCCEEEESSHHHHHHHHTTTCS-SEEEEECCC-----------------EEEECSHHHHHHHHTTTC--------
T ss_pred HCCCCCCCceeeCCHHHHHHHHHHcCC-CEEEEEcCCCCCc--c---------eEEEECCHHHHHHHHHhcC--------
Confidence 799999999999999999999999997 9999997654 43 3 8888889998887776541
Q ss_pred CCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
...++||+|++.+.|+.+.+..|+. |.++.++
T Consensus 166 -------~~~~lvEe~i~~g~e~sv~~~~d~~--G~~~~~~ 197 (369)
T 3aw8_A 166 -------GRGLILEGFVPFDREVSLLAVRGRT--GEVAFYP 197 (369)
T ss_dssp -------SSSEEEEECCCCSEEEEEEEEECTT--SCEEECC
T ss_pred -------CCcEEEEEcCCCCEEEEEEEEECCC--CCEEEEC
Confidence 2469999999988999999999975 4566665
No 18
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=98.50 E-value=3.5e-07 Score=96.17 Aligned_cols=91 Identities=21% Similarity=0.190 Sum_probs=74.8
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||+|++..+++.+|+.++++++|| |+|||+....+| + ||.+..|.+|+.+++++++.... .
T Consensus 116 ~~gip~p~~~~~~~~~e~~~~~~~~g~-PvvvKp~~~~gg--~---------Gv~~v~~~~el~~a~~~~~~~~~---~- 179 (412)
T 1vkz_A 116 KYGIRTARFEVAETPEELREKIKKFSP-PYVIKADGLARG--K---------GVLILDSKEETIEKGSKLIIGEL---I- 179 (412)
T ss_dssp HTTCCCCCEEEESSHHHHHHHHTTSCS-SEEEEESSCCSS--C---------CEEEESSHHHHHHHHHHHHHTSS---S-
T ss_pred HcCCCCCCEEEECCHHHHHHHHHhcCC-CEEEEeCCCCCC--C---------CEEEECCHHHHHHHHHHHHhhcc---c-
Confidence 899999999999999999999999997 999999765443 3 78899999999999998875320 0
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
.|. ...++||+|++ +.|+.+.+..|+.
T Consensus 180 --~g~-~~~vlvEe~i~-G~E~sv~~~~dg~ 206 (412)
T 1vkz_A 180 --KGV-KGPVVIDEFLA-GNELSAMAVVNGR 206 (412)
T ss_dssp --TTC-CSCEEEEECCC-SEEEEEEEEEETT
T ss_pred --cCC-CCeEEEEECCc-CcEEEEEEEECCC
Confidence 121 13799999999 8999999999864
No 19
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=98.49 E-value=4e-07 Score=99.27 Aligned_cols=95 Identities=18% Similarity=0.251 Sum_probs=76.8
Q ss_pred hCCCCCCCccc-----------------------------cCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCc
Q psy7785 19 VSTVHSTDKVC-----------------------------LEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFK 69 (525)
Q Consensus 19 ~~GIpvp~~~~-----------------------------~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~ 69 (525)
++|||+|++.. +++.+++.++++++|| |||||+..-.+ ||
T Consensus 174 ~~GVPvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~ea~~~a~~igy-PvVVKp~~ggG--G~-------- 242 (540)
T 3glk_A 174 TLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGF-PLMIKASEGGG--GK-------- 242 (540)
T ss_dssp HTTCCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHHHHHHHHHHCS-SEEEEETTCC-------------
T ss_pred HcCCCCCCcccccccccccccccccccccccccccccccCcCCHHHHHHHHHhcCC-cEEEEECCCCC--CC--------
Confidence 79999999987 8899999999999997 99999964433 33
Q ss_pred ceEEEeCCcccHHHHHHHHhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 70 SGVHFTNNVQDIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 70 GGV~l~~~~eea~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
||.+..+.+|+.++++++..... ...++||+|+++.+|+.+.+..|+. |.++.++
T Consensus 243 -Gv~iv~~~~eL~~a~~~~~~~~~-----------~~~vlVEe~I~g~rei~V~vl~d~~--G~vv~l~ 297 (540)
T 3glk_A 243 -GIRKAESAEDFPILFRQVQSEIP-----------GSPIFLMKLAQHARHLEVQILADQY--GNAVSLF 297 (540)
T ss_dssp --EEEECSTTTHHHHHHHHHHHST-----------TCCEEEEECCSSEEEEEEEEEECTT--SCEEEEE
T ss_pred -CEEEECCHHHHHHHHHHHHhhcc-----------CCCEEEEEecCCCcEEEEEEEEcCC--CCEEEEe
Confidence 78888999999999988864311 2569999999977999999999974 6777665
No 20
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=98.48 E-value=6.9e-07 Score=94.75 Aligned_cols=99 Identities=18% Similarity=0.289 Sum_probs=79.3
Q ss_pred hCCCCCCCcc--ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDKV--CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~--~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
++|||+|++. .+++.+++.++++++|| |||||+..-.+ |+ ||.+..+.+++.++++++.......
T Consensus 129 ~~Gip~p~~~~~~~~~~~e~~~~~~~~g~-PvvvKp~~g~g--g~---------Gv~~v~~~~el~~~~~~~~~~~~~~- 195 (446)
T 3ouz_A 129 RAGVPVIPGSDGALAGAEAAKKLAKEIGY-PVILKAAAGGG--GR---------GMRVVENEKDLEKAYWSAESEAMTA- 195 (446)
T ss_dssp HTTCCBCSBCSSSCCSHHHHHHHHHHHCS-SEEEEETTCCT--TC---------SEEEECSGGGHHHHHHHHHHHHHHH-
T ss_pred HcCCCcCCCcccCCCCHHHHHHHHHHhCC-CEEEEECCCCC--CC---------CEEEECCHHHHHHHHHHHHHHHHHh-
Confidence 7999999997 78999999999999997 99999964333 23 7999999999999999886532210
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
.+ ...++||+|+++.+|+.+.+..|.. |.++.++
T Consensus 196 ----~~--~~~~lvEe~i~g~~e~~v~v~~d~~--g~~~~~~ 229 (446)
T 3ouz_A 196 ----FG--DGTMYMEKYIQNPRHIEVQVIGDSF--GNVIHVG 229 (446)
T ss_dssp ----HS--CCCEEEEECCSSCEEEEEEEEECTT--SCEEEEE
T ss_pred ----cC--CCCEEEEeCCCCCcEEEEEEEEcCC--CCEEEEe
Confidence 01 2469999999987999999999975 5677765
No 21
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=98.46 E-value=5.9e-07 Score=98.64 Aligned_cols=95 Identities=18% Similarity=0.251 Sum_probs=78.7
Q ss_pred hCCCCCCCccc-----------------------------cCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCc
Q psy7785 19 VSTVHSTDKVC-----------------------------LEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFK 69 (525)
Q Consensus 19 ~~GIpvp~~~~-----------------------------~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~ 69 (525)
++|||+|++.. +++.+++.++++++|| |||||+..-.+ ||
T Consensus 190 ~aGVPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~~a~~iGy-PvVVKp~~GgG--Gk-------- 258 (587)
T 3jrx_A 190 TLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLEAAERIGF-PLMIKASEGGG--GK-------- 258 (587)
T ss_dssp HTTCCBCCBTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHHHHHHHHHHCS-SEEEEETTCCS--SS--------
T ss_pred HcCCCCCCeecccccccccccccccccccccchhhccccccCCHHHHHHHHHhcCC-eEEEEeCCCCC--CC--------
Confidence 79999999987 8899999999999997 99999964433 34
Q ss_pred ceEEEeCCcccHHHHHHHHhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 70 SGVHFTNNVQDIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 70 GGV~l~~~~eea~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
||.+..+.+|+.++++++..... ...++||+|+++.+|+.+.+..|.. |.++.++
T Consensus 259 -Gv~iV~s~eEL~~a~~~a~~~~~-----------~~~vlVEeyI~g~rei~V~vl~D~~--G~vv~l~ 313 (587)
T 3jrx_A 259 -GIRKAESAEDFPILFRQVQSEIP-----------GSPIFLMKLAQHARHLEVQILADQY--GNAVSLF 313 (587)
T ss_dssp -SEEEECSTTTHHHHHHHHHHHST-----------TCCEEEEECCCSCEEEEEEEEECSS--SCEEEEE
T ss_pred -CeEEeCCHHHHHHHHHHHHhhcc-----------CCCEEEEEecCCCcEEEEEEEEcCC--CCEEEEe
Confidence 78899999999999988864311 2569999999977999999999974 5666654
No 22
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=98.42 E-value=6.3e-07 Score=94.20 Aligned_cols=91 Identities=15% Similarity=0.149 Sum_probs=74.9
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||+|++..+++.+++.++++++|| |+|+|+....+| | ||.+..+.+++.+++++++....
T Consensus 112 ~~gip~p~~~~~~~~~~~~~~~~~~~~-P~vvKp~~~~~g--~---------Gv~~v~~~~el~~~~~~~~~~~~----- 174 (422)
T 2xcl_A 112 KYDIPTAEYETFTSFDEAKAYVQEKGA-PIVIKADGLAAG--K---------GVTVAMTEEEAIACLHDFLEDEK----- 174 (422)
T ss_dssp HTTCCBCCEEEESCHHHHHHHHHHHCS-SEEEEESSCGGG--T---------CEEEESSHHHHHHHHHHHHTSCT-----
T ss_pred HcCCCCCCeEEECCHHHHHHHHHhcCC-CEEEEeCCCCCC--C---------cEEEECCHHHHHHHHHHHHhhhh-----
Confidence 899999999999999999999999997 999999755443 3 78888999999999998875321
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
.|.....++||+|++ +.|+.+.+..|..
T Consensus 175 --~g~~~~~~lvEe~i~-g~E~sv~~~~dG~ 202 (422)
T 2xcl_A 175 --FGDASASVVIEEYLS-GEEFSLMAFVKGE 202 (422)
T ss_dssp --TGGGGSSEEEEECCC-SEEEEEEEEEETT
T ss_pred --ccCCCCeEEEEECCc-CcEEEEEEEEcCC
Confidence 121235799999999 7999999998754
No 23
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=98.42 E-value=3.2e-07 Score=103.47 Aligned_cols=104 Identities=13% Similarity=0.185 Sum_probs=80.5
Q ss_pred hCCCCCCCccccCCHHHHHHHH-HhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeC---CcccHHHHHHHHhccccc
Q psy7785 19 VSTVHSTDKVCLEDARTATNIL-KDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTN---NVQDIPPILEKMIGHKLI 94 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a-~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~---~~eea~~a~~~l~~~~~~ 94 (525)
++|||||++.++++.+++.+++ +.+|| |||||+.. ++.|+ ||.+.. +.+++.++++.++..
T Consensus 494 ~~GIPvP~~~~~~~~~ea~~~~~~~~g~-PvVVKP~~--G~~G~---------GV~iv~~~~s~eel~~a~~~~~~~--- 558 (750)
T 3ln6_A 494 EKHFPTPFGDEFTDRKEALNYFSQIQDK-PIVVKPKS--TNFGL---------GISIFKTSANLASYEKAIDIAFTE--- 558 (750)
T ss_dssp HTTCCCCCCCCEETTTTHHHHHHHSSSS-CEEEEETT--CCSSS---------SCEEESSCCCHHHHHHHHHHHHHH---
T ss_pred HCCcCCCCEEEECCHHHHHHHHHHhcCC-cEEEEeCC--CCCCC---------CEEEEeCCCCHHHHHHHHHHHHhh---
Confidence 8999999999999999998877 77897 99999953 33344 788865 889999999887531
Q ss_pred cccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCcc-----EEEecCCCCcccccccc
Q psy7785 95 TKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGP-----VVIISPSGGTDIENVAA 150 (525)
Q Consensus 95 ~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gp-----vi~~g~~GGv~iE~~~~ 150 (525)
...++||+|++ |.|+.+.+..|+.+ +. ..+.| -|+..|+.+-+
T Consensus 559 ----------~~~vlVEefI~-G~E~~v~Vvgg~vv-aa~~r~p~~v~G-dG~~tI~eLI~ 606 (750)
T 3ln6_A 559 ----------DSAILVEEYIE-GTEYRFFVLEGDCI-AVLLRVAANVVG-DGIHTISQLVK 606 (750)
T ss_dssp ----------CSEEEEEECCC-SEEEEEEEETTEEE-EEEEEECCEEEC-CTTCCHHHHHH
T ss_pred ----------CCcEEEEeccC-CCEEEEEEECCEEE-EEEEEecceEec-CCccCHHHHHH
Confidence 25799999998 79999999877654 32 23456 68777776653
No 24
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=98.41 E-value=3.1e-05 Score=82.62 Aligned_cols=212 Identities=14% Similarity=0.220 Sum_probs=134.0
Q ss_pred CcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHH
Q psy7785 302 GNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNAC 381 (525)
Q Consensus 302 ~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~ 381 (525)
|+||+||-||+.+....|.+...|+-....+-++++++. .+.++++.+.+||++++|++..-+ +.+.....+....+.
T Consensus 150 G~v~~vsqSG~~~~~~~~~~~~~g~G~s~~vs~G~~~~~-~~~d~l~~~~~D~~t~~I~l~~E~-i~~~~~f~~~a~~~~ 227 (457)
T 2csu_A 150 GNVAFISQSGALGAGIVYKTIKEDIGFSKFISVGNMADV-DFAELMEYLADTEEDKAIALYIEG-VRNGKKFMEVAKRVT 227 (457)
T ss_dssp CSEEEEESCHHHHHHHHHHHHHTTCEESEEEECTTCCSS-CHHHHHHHHTTCSSCCEEEEEESC-CSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCCcCCC-CHHHHHHHHhcCCCCCEEEEEEec-CCCHHHHHHHHHHhc
Confidence 899999999999999999999999987788888887643 489999999999999998875432 122322222222222
Q ss_pred HhcCCCCcEEEEeCCcc-----------------hHHHHHHHhhCCCCccccCCHHHHHHHHHHhhc-c-----------
Q psy7785 382 KSFKLSIPLVVRLEGTN-----------------VQEGKRILDESKLPLIFASDLDEAASLVNACKS-F----------- 432 (525)
Q Consensus 382 ~~~~~~kPivv~~~g~~-----------------~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~-~----------- 432 (525)
.+|||++...|.. .......|++.|+... +++.+-......+.. .
T Consensus 228 ----~~KPVv~~k~G~~~~g~~aa~~Htgalag~~~~~~AafRqaGv~~v--~~~~El~~~~~~l~~~~~~g~rvaiitn 301 (457)
T 2csu_A 228 ----KKKPIIALKAGKSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVA--NTIDEMLSMARAFSQPLPRGNKVAIMTN 301 (457)
T ss_dssp ----HHSCEEEEECC------------------CHHHHHHHHHHTTCEEE--SSHHHHHHHHTTTTSCCCSSSEEEEEES
T ss_pred ----CCCCEEEEEcCCCccccchhhcccCccCCcHHHHHHHHHhCCCeEE--CCHHHHHHHHHHhcCCCCCCCcEEEEEC
Confidence 3599998766521 1112447888999877 887664443322221 0
Q ss_pred ---------------cCCCCe---------------------EEEeCC-CCHH---HHH-HHHHHCCCCe---EEE----
Q psy7785 433 ---------------KLSIPL---------------------VVRLEG-TNVQ---EGK-RILDESKLPL---IFA---- 464 (525)
Q Consensus 433 ---------------~~~~P~---------------------~~~l~g-~~e~---eak-~LL~ayGIpv---~lA---- 464 (525)
....|. ...+-+ .+.+ ++. .+|+.-++.. .+.
T Consensus 302 gGG~~~laaD~~~~~Gl~l~~l~~~t~~~L~~~lp~~~~~~NPlDl~g~a~~~~~~~al~~~l~dp~vd~vlv~~~~~~~ 381 (457)
T 2csu_A 302 AGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTAKLLLQDPNVDMLIAICVVPTF 381 (457)
T ss_dssp CHHHHHHHHHHHHTTTCEECCCCHHHHHHHHHHSCTTCEESSEEECCTTCCHHHHHHHHHHHHHSTTCSEEEEEEECCCS
T ss_pred CHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhCccccccCCCeeCCCCCCHHHHHHHHHHHhcCCCCCEEEEEcccccc
Confidence 000000 000111 1221 233 4555567776 222
Q ss_pred --cC-hhHHHHHHHHhhhcCCCCcEEE-EEecCChHHHHHhhhhCCCCceeccCHHHHHHHhH
Q psy7785 465 --SD-LDEAASLVNACKSFKLSIPLVV-RLEGTNVQEGKRILDESKLPLIFASDLDEAANWFI 523 (525)
Q Consensus 465 --~s-~deAv~~~~aa~~~~~G~PVVl-Ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (525)
.+ .+.+...+++..++..+-|+|+ -+.|++.++++++|.++|+++ |+++++|+.++.
T Consensus 382 Gg~~~~~~a~~i~~al~~~~~~kPvvv~~~~g~~~~~~~~~L~~~Gip~--~~spe~Av~al~ 442 (457)
T 2csu_A 382 AGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYVSEKAKELLEKNGIPT--YERPEDVASAAY 442 (457)
T ss_dssp TTCCSSHHHHHHHHHHHHHCCCCCEEEEEECTTTTHHHHHHHHTTTCCE--ESSHHHHHHHHH
T ss_pred ccCCchhHHHHHHHHHHHhcCCCCEEEEeCCCcchHHHHHHHHhCCCCc--cCCHHHHHHHHH
Confidence 11 2223333344444212679887 788999999999999999877 899999998764
No 25
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=98.41 E-value=2.6e-06 Score=88.09 Aligned_cols=85 Identities=13% Similarity=0.142 Sum_probs=70.0
Q ss_pred hCCCCCCCccccCCHH----HHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccc
Q psy7785 19 VSTVHSTDKVCLEDAR----TATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLI 94 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~e----ea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~ 94 (525)
++|||+|++.++++.+ ++.++++++|| |||||+....+ + -||.+..+.+++.+++++++..
T Consensus 150 ~~Gip~p~~~~~~~~~~~~~~~~~~~~~lg~-PvvVKP~~ggs--s---------~Gv~~v~~~~el~~a~~~a~~~--- 214 (364)
T 3i12_A 150 DAGLNIAPFITLTRTNRHAFSFAEVESRLGL-PLFVKPANQGS--S---------VGVSKVANEAQYQQAVALAFEF--- 214 (364)
T ss_dssp HTTCCBCCEEEEETTTGGGCCHHHHHHHHCS-SEEEEETTCCT--T---------TTCEEESSHHHHHHHHHHHHHH---
T ss_pred HCCCCCCCEEEEEccccchhhHHHHHHhcCC-CEEEEECCCCC--C---------cCeEEeCCHHHHHHHHHHHHhc---
Confidence 7999999999999887 88888999997 99999973322 1 2778888999999998887531
Q ss_pred cccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 95 TKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 95 ~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
-..++||+|+++ +|+.+++..|..
T Consensus 215 ----------~~~vlVEe~I~G-~E~~v~vl~~~~ 238 (364)
T 3i12_A 215 ----------DHKVVVEQGIKG-REIECAVLGNDN 238 (364)
T ss_dssp ----------CSEEEEEECCCS-EEEEEEEEESSS
T ss_pred ----------CCcEEEEcCcCC-eEEEEEEEeCCC
Confidence 257999999985 999999998864
No 26
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=98.40 E-value=7.6e-07 Score=94.64 Aligned_cols=91 Identities=18% Similarity=0.198 Sum_probs=73.0
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||+|++..+++.+++.+++++++| |+|||+....+| | ||.+..+.+|+.+++++++....
T Consensus 133 ~~gip~p~~~~~~~~~~~~~~~~~~~~-PvVvKp~~~~gg--~---------Gv~~v~~~~el~~~~~~~~~~~~----- 195 (451)
T 2yrx_A 133 KYGIPTADHAAFTSYEEAKAYIEQKGA-PIVIKADGLAAG--K---------GVTVAQTVEEALAAAKAALVDGQ----- 195 (451)
T ss_dssp HTTCCBCCEEEESCHHHHHHHHHHHCS-SEEEEECC------C---------CEEEESSHHHHHHHHHHHHHHSC-----
T ss_pred HcCCCCCCeEEECCHHHHHHHHHhcCC-cEEEEeCCCCCC--C---------cEEEECCHHHHHHHHHHHHhccc-----
Confidence 799999999999999999999999997 999999765543 3 78888999999999988865321
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
.|.....++||||++ +.|+.+.+.+|..
T Consensus 196 --~g~~~~~~lvEe~i~-G~E~sv~~~~dG~ 223 (451)
T 2yrx_A 196 --FGTAGSQVVIEEYLE-GEEFSFMAFVNGE 223 (451)
T ss_dssp --CBTTBCCEEEEECCC-SEEEEEEEEEETT
T ss_pred --cCCCCCeEEEEECCc-CcEEEEEEEEcCC
Confidence 121235799999999 7899999998754
No 27
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=98.39 E-value=8.4e-07 Score=104.18 Aligned_cols=94 Identities=15% Similarity=0.234 Sum_probs=77.3
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||+|++.++++.+|+.++++++|| |||||+....|| + ||.+..|.+|+.+++++++...
T Consensus 138 ~~Gipvp~~~~v~~~~ea~~~~~~ig~-PvVvKp~~~~Gg--~---------Gv~iv~~~eel~~~~~~~~~~~------ 199 (1073)
T 1a9x_A 138 KIGLETARSGIAHTMEEALAVAADVGF-PCIIRPSFTMGG--S---------GGGIAYNREEFEEICARGLDLS------ 199 (1073)
T ss_dssp HTTCCCCSEEEESSHHHHHHHHHHHCS-SEEEEETTCCTT--T---------TCEEESSHHHHHHHHHHHHHHC------
T ss_pred HCCcCCCCEEEECCHHHHHHHHHHcCC-CEEEEECCCCCC--C---------ceEEeCCHHHHHHHHHHHHhhC------
Confidence 799999999999999999999999997 999999755443 3 6778889999999998876431
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEe
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVII 137 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~ 137 (525)
....++||+|+++.+|+.+.+.+|.. |.++.+
T Consensus 200 -----~~~~vlvEe~I~G~~E~~v~v~~d~~--g~~v~~ 231 (1073)
T 1a9x_A 200 -----PTKELLIDESLIGWKEYEMEVVRDKN--DNCIIV 231 (1073)
T ss_dssp -----TTSCEEEEECCTTSEEEEEEEEECTT--CCEEEE
T ss_pred -----CCCcEEEEEccCCCeEEEEEEEEeCC--CCEEEE
Confidence 13579999999988999999999964 444444
No 28
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=98.37 E-value=1e-06 Score=92.71 Aligned_cols=91 Identities=16% Similarity=0.269 Sum_probs=74.5
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||+|++..+++.+++.++++++|| |+|+|+....+| | ||.+..|.+|+.+++++++....
T Consensus 112 ~~gip~p~~~~~~~~~~~~~~~~~~~~-PvvvKp~~g~gg--~---------Gv~~v~~~~el~~~~~~~~~~~~----- 174 (424)
T 2yw2_A 112 KYGIPTARYEVFTDFEKAKEYVEKVGA-PIVVKADGLAAG--K---------GAVVCETVEKAIETLDRFLNKKI----- 174 (424)
T ss_dssp HTTCCBCCEEEESCHHHHHHHHHHHCS-SEEEEESSCCTT--C---------SEEEESSHHHHHHHHHHHHTSCT-----
T ss_pred HcCCCCCCeEEECCHHHHHHHHHHcCC-cEEEEeCCCCCC--C---------CEEEECCHHHHHHHHHHHHhhhh-----
Confidence 799999999999999999999999997 999999755443 3 78888999999999998865321
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
.|.....++||+|++ +.|+.+.+..|..
T Consensus 175 --~g~~~~~~lvEe~i~-g~E~sv~~~~~G~ 202 (424)
T 2yw2_A 175 --FGKSSERVVIEEFLE-GEEASYIVMINGD 202 (424)
T ss_dssp --TGGGGSSEEEEECCC-SEEEEEEEEEETT
T ss_pred --ccCCCCeEEEEECCC-CcEEEEEEEEcCC
Confidence 122235799999999 7899999998753
No 29
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=98.35 E-value=1.2e-06 Score=92.88 Aligned_cols=99 Identities=15% Similarity=0.278 Sum_probs=78.0
Q ss_pred hCCCCCCCcc--ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDKV--CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~--~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
++|||+|++. .+++.+++.++++++|| |+|||+....+| + ||.+..+.+++.++++++......
T Consensus 124 ~~gip~p~~~~~~~~~~~~~~~~~~~~g~-PvvvKp~~g~gg--~---------Gv~~v~~~~el~~~~~~~~~~~~~-- 189 (451)
T 1ulz_A 124 KAGVPVVPGSDGVLKSLEEAKALAREIGY-PVLLKATAGGGG--R---------GIRICRNEEELVKNYEQASREAEK-- 189 (451)
T ss_dssp HTTCCBCCBCSSSCCCHHHHHHHHHHHCS-SEEEEECSSSSC--C---------SCEEESSHHHHHHHHHHHHHHHHH--
T ss_pred HcCCCCCCCcccccCCHHHHHHHHHHcCC-CEEEEECCCCCC--c---------cEEEeCCHHHHHHHHHHHHHHHHH--
Confidence 7999999997 78999999999999997 999999765443 3 788888999999999888653110
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
. .+ -..++||+++++.+|+.+.+..|.. |.++.++
T Consensus 190 ~---~~--~~~~lvEe~i~g~~e~~v~v~~~~~--G~~~~~~ 224 (451)
T 1ulz_A 190 A---FG--RGDLLLEKFIENPKHIEYQVLGDKH--GNVIHLG 224 (451)
T ss_dssp T---TS--CCCEEEEECCCSCEEEEEEEEECTT--SCEEEEE
T ss_pred h---cC--CCeEEEEEcccCCeEEEEEEEEcCC--CCEEEEe
Confidence 0 11 2479999999977999999999864 4555544
No 30
>1a9x_A Carbamoyl phosphate synthetase (large chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: a.92.1.1 c.24.1.1 c.30.1.1 c.30.1.1 d.142.1.2 d.142.1.2 PDB: 1ce8_A* 1m6v_A* 1c30_A* 1bxr_A* 1c3o_A* 1cs0_A* 1jdb_B* 1kee_A* 1t36_A*
Probab=98.35 E-value=1.1e-06 Score=103.13 Aligned_cols=88 Identities=13% Similarity=0.192 Sum_probs=67.0
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||+|++..+++.+|+.++++++|| |||||+....+| + ||.+..+.+++.++++++....
T Consensus 684 ~~GIp~P~~~~~~s~eea~~~~~~ig~-PvvVKP~~~~gG--~---------Gv~iv~~~~el~~~~~~a~~~~------ 745 (1073)
T 1a9x_A 684 RLKLKQPANATVTAIEMAVEKAKEIGY-PLVVRASYVLGG--R---------AMEIVYDEADLRRYFQTAVSVS------ 745 (1073)
T ss_dssp HHTCCCCCEEECCSHHHHHHHHHHHCS-SEEEEC------------------CEEEECSHHHHHHHHHHCC---------
T ss_pred HcCcCCCCceEECCHHHHHHHHHHcCC-CEEEEECCCCCC--C---------CeEEECCHHHHHHHHHHHHhhC------
Confidence 799999999999999999999999997 999999766554 3 7888889999998888764210
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
....++||+|+++.+|+.+.+..|+.
T Consensus 746 -----~~~~vlvEefI~g~~E~~V~~l~d~~ 771 (1073)
T 1a9x_A 746 -----NDAPVLLDHFLDDAVEVDVDAICDGE 771 (1073)
T ss_dssp ----------EEEBCCTTCEEEEEEEEECSS
T ss_pred -----CCCcEEEEEccCCCcEEEEEEEEECC
Confidence 12469999999977799999999874
No 31
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=98.34 E-value=1.3e-06 Score=90.71 Aligned_cols=91 Identities=11% Similarity=0.146 Sum_probs=73.7
Q ss_pred hhCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785 18 PVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ 97 (525)
Q Consensus 18 ~~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~ 97 (525)
+++|||+|++..+++.+++.++++++|| |+|+|+....+| + ||.+..+.+++.++++++.....
T Consensus 122 ~~~gip~p~~~~~~~~~~~~~~~~~~g~-P~vvKp~~g~gg--~---------Gv~~v~~~~el~~~~~~~~~~~~---- 185 (391)
T 1kjq_A 122 EELQLPTSTYRFADSESLFREAVADIGY-PCIVKPVMSSSG--K---------GQTFIRSAEQLAQAWKYAQQGGR---- 185 (391)
T ss_dssp TTSCCCBCCEEEESSHHHHHHHHHHHCS-SEEEEESCC-----C---------CCEEECSGGGHHHHHHHHHHHSG----
T ss_pred HhCCCCCCCeeeeCCHHHHHHHHHhcCC-CEEEEeCCCCCC--C---------CeEEECCHHHHHHHHHHHHhhcc----
Confidence 3689999999999999999999999997 999999754433 3 78888899999999998865321
Q ss_pred CCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
+ ....++||+|++.+.|+.+.+.+|..
T Consensus 186 ----~-~~~~~lvEe~i~~g~E~sv~~~~~~~ 212 (391)
T 1kjq_A 186 ----A-GAGRVIVEGVVKFDFEITLLTVSAVD 212 (391)
T ss_dssp ----G-GCCCEEEEECCCCSEEEEEEEEEETT
T ss_pred ----c-CCCCEEEEEecCCCeEEEEEEEEeCC
Confidence 1 12569999999988999999998854
No 32
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=98.32 E-value=1.8e-06 Score=91.95 Aligned_cols=97 Identities=15% Similarity=0.228 Sum_probs=76.8
Q ss_pred hCCCCCCCcc--ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDKV--CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~--~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
++|||+|++. .+++.+++.++++++|| |+|||+....+| + ||.+..+.+++.++++++......
T Consensus 130 ~~Gip~p~~~~~~~~~~~~~~~~~~~~g~-PvvvKp~~g~gg--~---------Gv~~v~~~~el~~~~~~~~~~~~~-- 195 (461)
T 2dzd_A 130 NAGIPVIPGSDGPVDGLEDVVAFAEAHGY-PIIIKAALGGGG--R---------GMRIVRSKSEVKEAFERAKSEAKA-- 195 (461)
T ss_dssp HTTCCBCCBCSSCCSSHHHHHHHHHHHCS-CEEEEESTTCSS--S---------SEEEECCGGGHHHHHHHHHHHHHH--
T ss_pred HcCCCCCCCcccCcCCHHHHHHHHHhcCC-cEEEEeCCCCCC--C---------CEEEeCCHHHHHHHHHHHHHHHHh--
Confidence 7999999997 78999999999999997 999999765443 3 788889999999999888653110
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEE
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVI 136 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~ 136 (525)
. .+ ...++||+++++.+|+.+.+..|.. |.++.
T Consensus 196 ~---~~--~~~~lvEe~i~g~~e~~v~v~~~~~--G~~~~ 228 (461)
T 2dzd_A 196 A---FG--SDEVYVEKLIENPKHIEVQILGDYE--GNIVH 228 (461)
T ss_dssp H---TS--CCCEEEEECCCSCEEEEEEEEECTT--CCEEE
T ss_pred h---cC--CCcEEEEECCCCCeEEEEEEEEcCC--CCEEE
Confidence 0 01 2569999999987999999999864 45543
No 33
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=98.32 E-value=1.5e-06 Score=92.25 Aligned_cols=91 Identities=15% Similarity=0.227 Sum_probs=71.8
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCc-EEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKE-YVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ 97 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~P-vVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~ 97 (525)
++|||+|++..+++.+++.++++++|| | +|||+....+| | ||.+..+.+|+.+++++++....
T Consensus 138 ~~gip~p~~~~~~~~~~~~~~~~~~g~-P~vvvKp~~~~gg--~---------Gv~~v~~~~el~~~~~~~~~~~~---- 201 (452)
T 2qk4_A 138 RHGIPTAQWKAFTKPEEACSFILSADF-PALVVKASGLAAG--K---------GVIVAKSKEEACKAVQEIMQEKA---- 201 (452)
T ss_dssp HTTCCBCCEEEESSHHHHHHHHHHCSS-CEEEEEESBC-----C---------CEEECSSHHHHHHHHHHHTTC------
T ss_pred HCCCCCCCeEEECCHHHHHHHHHhCCC-CeEEEEeCCCCCC--C---------CEEEeCCHHHHHHHHHHHHhhhh----
Confidence 799999999999999999999999997 9 99999755443 3 78888899999999998865321
Q ss_pred CCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
.|.....++||||++ +.|+.+.+..|+.
T Consensus 202 ---~g~~~~~~lvEe~i~-G~E~sv~~~~dG~ 229 (452)
T 2qk4_A 202 ---FGAAGETIVIEELLD-GEEVSCLCFTDGK 229 (452)
T ss_dssp --------CCEEEEECCC-SEEEEEEEEECSS
T ss_pred ---ccCCCCeEEEEECCC-CCeEEEEEEECCC
Confidence 121135799999999 7999999998754
No 34
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=98.31 E-value=5e-07 Score=93.06 Aligned_cols=91 Identities=18% Similarity=0.218 Sum_probs=42.3
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeecc-ccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILA-GGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ 97 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~-~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~ 97 (525)
++|||+|++..++ .+++.++++++|| |+|+|+.... +| + ||.+..+.+++.++++++++
T Consensus 102 ~~gip~p~~~~~~-~~~~~~~~~~~~~-P~vvKp~~~~~~g--~---------Gv~~v~~~~el~~~~~~~~~------- 161 (365)
T 2z04_A 102 KHGFPVPEFLVIK-RDEIIDALKSFKL-PVVIKAEKLGYDG--K---------GQYRIKKLEDANQVVKNHDK------- 161 (365)
T ss_dssp TTTCCCCCEEEC----------------CEEEECC---------------------------------------------
T ss_pred HcCCCCCCEEEEc-HHHHHHHHHhcCC-CEEEEEcCCCcCC--C---------CeEEECCHHHHHHHHHHhcc-------
Confidence 8999999999999 8999999999997 9999997654 43 3 78787888888888777642
Q ss_pred CCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
-..++||+|++.+.|+.+.+..|+. |.++.++
T Consensus 162 -------~~~~lvEe~i~~g~e~sv~~~~d~~--G~~~~~~ 193 (365)
T 2z04_A 162 -------EESFIIEEFVKFEAEISCIGVRDRE--GKTYFYP 193 (365)
T ss_dssp ----------CEEEECCCCSEEEEEEEEECTT--CCEEECC
T ss_pred -------CCCEEEEccCCCCEEEEEEEEECCC--CCEEEEC
Confidence 1468999999878999999999865 4555555
No 35
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=98.30 E-value=1.7e-06 Score=90.00 Aligned_cols=91 Identities=12% Similarity=0.284 Sum_probs=75.3
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeecc-ccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILA-GGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ 97 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~-~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~ 97 (525)
++|||+|++..+++.+++.++++++|| |+|||+.... + || ||.+..+.+++.++++.+..
T Consensus 120 ~~Gip~p~~~~~~~~~~~~~~~~~~g~-P~vvKp~~gg~~--g~---------Gv~~v~~~~el~~a~~~~~~------- 180 (377)
T 3orq_A 120 SAGTKVVPFISVKESTDIDKAIETLGY-PFIVKTRFGGYD--GK---------GQVLINNEKDLQEGFKLIET------- 180 (377)
T ss_dssp HTTCCBCCEEEECSSTHHHHHHHHTCS-SEEEEESSSCCT--TT---------TEEEECSTTSHHHHHHHHTT-------
T ss_pred HCCCCCCCeEEECCHHHHHHHHHHcCC-CEEEEeCCCCCC--CC---------CeEEECCHHHHHHHHHhcCC-------
Confidence 799999999999999999999999997 9999996432 2 34 78888899999988887631
Q ss_pred CCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
..++||+|+++..|+.+.+.+|.. |.+..++
T Consensus 181 --------~~~ivEe~i~g~~E~sv~~~~~~~--g~~~~~~ 211 (377)
T 3orq_A 181 --------SECVAEKYLNIKKEVSLTVTRGNN--NQITFFP 211 (377)
T ss_dssp --------SCEEEEECCCEEEEEEEEEEECGG--GCEEECC
T ss_pred --------CcEEEEccCCCCEEEEEEEEEeCC--CCEEEEC
Confidence 458999999977999999998864 4556655
No 36
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=98.30 E-value=1.4e-06 Score=92.49 Aligned_cols=99 Identities=19% Similarity=0.266 Sum_probs=77.4
Q ss_pred hCCCCCCCcc--ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDKV--CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~--~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
++|||+|++. .+++.+++.++++++|| |+|||+....+| + ||.+..+.+++.++++++.......
T Consensus 124 ~~gip~p~~~~~~~~~~~~~~~~~~~~g~-PvvvKp~~g~gg--~---------Gv~~v~~~~el~~~~~~~~~~~~~~- 190 (451)
T 2vpq_A 124 KANVPVVPGSDGLMKDVSEAKKIAKKIGY-PVIIKATAGGGG--K---------GIRVARDEKELETGFRMTEQEAQTA- 190 (451)
T ss_dssp HTTCCBCSBCSSCBSCHHHHHHHHHHHCS-SEEEEETTCCTT--C---------SEEEESSHHHHHHHHHHHHHHHHHH-
T ss_pred HcCCCcCCCcccCcCCHHHHHHHHHhcCC-cEEEEECCCCCC--C---------CEEEeCCHHHHHHHHHHHHHHHHhh-
Confidence 7999999977 88999999999999997 999999755443 3 7888889999999998886431100
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
.+ ...++||+|+++.+|+.+.+..|.. |.++.++
T Consensus 191 ----~~--~~~~lvEe~i~g~~e~~v~v~~~~~--G~~~~~~ 224 (451)
T 2vpq_A 191 ----FG--NGGLYMEKFIENFRHIEIQIVGDSY--GNVIHLG 224 (451)
T ss_dssp ----HS--CCCEEEEECCCSEEEEEEEEEECTT--SCEEEEE
T ss_pred ----cC--CCcEEEEEecCCCeEEEEEEEEcCC--CCEEEEe
Confidence 01 2569999999977899999999864 4565554
No 37
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=98.30 E-value=1.2e-06 Score=91.92 Aligned_cols=87 Identities=16% Similarity=0.233 Sum_probs=72.5
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||+|++..+++.+++.++++++|| |+|+|+....+| | ||.+..+.+|+.+++++++....
T Consensus 111 ~~gip~p~~~~~~~~~~~~~~~~~~~~-P~vvKp~~~~gg--~---------Gv~~v~~~~el~~~~~~~~~~~~----- 173 (417)
T 2ip4_A 111 RYGIPTARYRVFREPLEALAYLEEVGV-PVVVKDSGLAAG--K---------GVTVAFDLHQAKQAVANILNRAE----- 173 (417)
T ss_dssp HTCCCBCCEEEESSHHHHHHHHHHHCS-SEEEECTTSCSS--T---------TCEEESCHHHHHHHHHHHTTSSS-----
T ss_pred HcCCCCCCeeeeCCHHHHHHHHHHcCC-CEEEEECCCCCC--C---------CEEEeCCHHHHHHHHHHHHhhcc-----
Confidence 799999999999999999999999997 999999654432 3 78888899999999988863211
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
+ ..++||||++ +.|+.+.+..|..
T Consensus 174 ---~---~~~lvEe~i~-g~E~sv~~~~~G~ 197 (417)
T 2ip4_A 174 ---G---GEVVVEEYLE-GEEATVLALTDGE 197 (417)
T ss_dssp ---C---CCEEEEECCC-SCEEEEEEEESSS
T ss_pred ---C---CeEEEEECcc-CcEEEEEEEEeCC
Confidence 1 5699999999 7899999998754
No 38
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=98.29 E-value=2.2e-06 Score=93.70 Aligned_cols=94 Identities=15% Similarity=0.187 Sum_probs=76.2
Q ss_pred hCCCCCCCcccc--------------------------CCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceE
Q psy7785 19 VSTVHSTDKVCL--------------------------EDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGV 72 (525)
Q Consensus 19 ~~GIpvp~~~~~--------------------------~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV 72 (525)
++|||+|++..+ ++.+++.++++++|| |||||+....+| | ||
T Consensus 183 ~~GIp~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~~~~~~g~-PvVvKp~~g~gg--~---------Gv 250 (554)
T 1w96_A 183 SAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQKAKRIGF-PVMIKASEGGGG--K---------GI 250 (554)
T ss_dssp HTTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHHHHHHHCS-SEEEEETTCCTT--T---------TE
T ss_pred HCCCCcCCccccccccccccccccccccccccccccCCCCHHHHHHHHHHcCC-CEEEEECCCCCC--c---------eE
Confidence 799999998775 789999999999997 999999755443 3 78
Q ss_pred EEeCCcccHHHHHHHHhccccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEe
Q psy7785 73 HFTNNVQDIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVII 137 (525)
Q Consensus 73 ~l~~~~eea~~a~~~l~~~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~ 137 (525)
.+..+.+|+.++++++..... ...++||+++++++|+.+.+..|.. |.++.+
T Consensus 251 ~~v~~~~el~~a~~~~~~~~~-----------~~~vlvEe~i~g~~e~sv~vl~d~~--G~vv~l 302 (554)
T 1w96_A 251 RQVEREEDFIALYHQAANEIP-----------GSPIFIMKLAGRARHLEVQLLADQY--GTNISL 302 (554)
T ss_dssp EEECSHHHHHHHHHHHHHHST-----------TCCEEEEECCCSCEEEEEEEEECTT--SCEEEE
T ss_pred EEECCHHHHHHHHHHHHhhcc-----------CCCEEEEEecCCCcEEEEEEEEcCC--CCEEEE
Confidence 888899999999988864311 2469999999988999999999863 455543
No 39
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=98.23 E-value=6.2e-06 Score=88.44 Aligned_cols=104 Identities=12% Similarity=0.084 Sum_probs=73.8
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||+|++..+++.+++.++++++|| |||||+..-.+| + ||.+..+.+|+.++++++...... ..
T Consensus 149 ~~GIpvp~~~~v~s~ee~~~~~~~lg~-PvVVKP~~g~gg--~---------Gv~iv~~~eel~~a~~~~~~~~~~--~~ 214 (474)
T 3vmm_A 149 KAGVKSIKNKRVTTLEDFRAALEEIGT-PLILKPTYLASS--I---------GVTLITDTETAEDEFNRVNDYLKS--IN 214 (474)
T ss_dssp HTTSCCCCEEEECSHHHHHHHHHHSCS-SEEEEESSCCTT--T---------TCEEECCTTSHHHHHHHHHHHHTT--SC
T ss_pred HcCCCCCCeEEECCHHHHHHHHHHcCC-CEEEEECCCCcC--c---------eEEEECCHHHHHHHHHHHHHHHhh--cc
Confidence 799999999999999999999999997 999999654433 3 677888999999999887653210 00
Q ss_pred CCCC-cccCeEEEEeeeCCce-----------eEEE-EEEEcCCCCccEEEe
Q psy7785 99 PKTG-INVNKVMVAKSVNITR-----------ETYF-CIVQDRLHNGPVVII 137 (525)
Q Consensus 99 ~~~g-~~~~~vlVee~~~~~~-----------E~~v-gv~~D~~f~gpvi~~ 137 (525)
.+.. .....++||+|+++.+ |+.+ ++..|..+ .++.+.
T Consensus 215 ~~~a~~~~~~vlVEe~I~G~e~~~~q~~~~~~e~sv~~v~~dg~~-~~v~i~ 265 (474)
T 3vmm_A 215 VPKAVTFEAPFIAEEFLQGEYGDWYQTEGYSDYISIEGIMADGEY-FPIAIH 265 (474)
T ss_dssp CCTTCCCSCSEEEEECCCBCHHHHCSSSSSCSEEEEEEEEETTEE-EEEEEE
T ss_pred ccccccCCCeEEEEeCCCCceeeeeecccccceeEEEEEEECCeE-EEEEEE
Confidence 0000 0126799999998543 2655 46677765 344443
No 40
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=98.23 E-value=1.6e-06 Score=91.83 Aligned_cols=99 Identities=16% Similarity=0.193 Sum_probs=76.7
Q ss_pred hCCCCCCCcc--ccCCHHHH-HHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccc
Q psy7785 19 VSTVHSTDKV--CLEDARTA-TNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT 95 (525)
Q Consensus 19 ~~GIpvp~~~--~~~~~eea-~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~ 95 (525)
++|||+|++. .+++.+++ .++++++|| |+|||+....+| + ||.+..+.+++.+++++++.....
T Consensus 125 ~~gip~p~~~~~~~~~~~~~~~~~~~~~g~-PvvvKp~~g~gg--~---------Gv~~v~~~~el~~~~~~~~~~~~~- 191 (449)
T 2w70_A 125 KAGVPCVPGSDGPLGDDMDKNRAIAKRIGY-PVIIKASGGGGG--R---------GMRVVRGDAELAQSISMTRAEAKA- 191 (449)
T ss_dssp HHTCCBCSBCSSCCCSCHHHHHHHHHHHCS-SEEEEETTCCTT--T---------TCEEECSHHHHHHHHHHHHHHHHH-
T ss_pred HcCCCcCCCcccccCCHHHHHHHHHHHhCC-cEEEEECCCCCC--C---------CEEEeCCHHHHHHHHHHHHHHHHh-
Confidence 7999999997 88999999 999999997 999999755443 3 788888999999998887642110
Q ss_pred ccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 96 KQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 96 ~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
. .+ ...++||+++++++|+.+.+..|.. |.++.++
T Consensus 192 -~---~~--~~~~lvEe~i~g~~e~~v~~~~~~~--G~~~~~~ 226 (449)
T 2w70_A 192 -A---FS--NDMVYMEKYLENPRHVEIQVLADGQ--GNAIYLA 226 (449)
T ss_dssp -H---HS--CCCEEEEECCSSCEEEEEEEEECTT--SCEEEEE
T ss_pred -h---cC--CCcEEEEeccCCCeEEEEEEEEcCC--CCEEEEe
Confidence 0 01 2469999999977999999999864 4555444
No 41
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=98.22 E-value=7.5e-07 Score=104.82 Aligned_cols=99 Identities=12% Similarity=0.219 Sum_probs=73.1
Q ss_pred hCCCCCCCcc--ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDKV--CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~--~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
++|||+|++. .+++.+++.++++++|| |||||+..-.+| + ||.+..+.+++.++++++.....
T Consensus 128 ~aGIPvpp~~~~~v~s~eea~~~a~~iGy-PvVVKP~~GgGg--~---------Gv~vv~s~eeL~~a~~~a~~~a~--- 192 (1150)
T 3hbl_A 128 KADLPVIPGTDGPIKSYELAKEFAEEAGF-PLMIKATSGGGG--K---------GMRIVREESELEDAFHRAKSEAE--- 192 (1150)
T ss_dssp HTTCCBCCBCSSCBCSSSTTTTTGGGTCS-SEEEECCC------------------CEECCSSSCTHHHHSSSSSCC---
T ss_pred HcCcCCCCccccCCCCHHHHHHHHHHcCC-CEEEEeCCCCCC--C---------CEEEECCHHHHHHHHHHHHHHHH---
Confidence 7999999998 78999999999999997 999999754443 3 78888899999988887754321
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
.......++||+|+++.+|+.+.+..|.. |.++.++
T Consensus 193 ----~~fg~~~vlVEeyI~G~reieV~vl~d~~--G~vv~l~ 228 (1150)
T 3hbl_A 193 ----KSFGNSEVYIERYIDNPKHIEVQVIGDEH--GNIVHLF 228 (1150)
T ss_dssp ----------CBEEECCCSSCEEEEEEEEECSS--SCEEEEE
T ss_pred ----hhcCCCcEEEEEccCCCcEEEEEEEEeCC--CCEEEEE
Confidence 00112579999999987999999999974 5666654
No 42
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=98.21 E-value=6.6e-06 Score=84.33 Aligned_cols=82 Identities=12% Similarity=0.141 Sum_probs=65.5
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||+|++.++++.+ ..+++++|| |||||+....++ + ||.+..+.+++.++++++...
T Consensus 142 ~~Gip~p~~~~~~~~~--~~~~~~lg~-PvvvKP~~~~~s--~---------Gv~~v~~~~el~~a~~~~~~~------- 200 (346)
T 3se7_A 142 SAGIATPNFWTVTADE--KIPTDQLTY-PVFVKPARSGSS--F---------GVSKVAREEDLQGAVEAAREY------- 200 (346)
T ss_dssp HTTCBCCCEEEEETTS--CCCTTTCCS-SEEEEESSCCTT--T---------TCEEECSHHHHHHHHHHHTTT-------
T ss_pred HcCcCcCCEEEEcCcH--HHHHHhcCC-CEEEEeCCCCCC--c---------CEEEECCHHHHHHHHHHHHhC-------
Confidence 7999999999998866 345678897 999999644322 2 677888999999888886431
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcC
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDR 128 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~ 128 (525)
-..++||+|++ ++|+.+++..|.
T Consensus 201 ------~~~vlvEe~I~-G~E~~v~vl~~~ 223 (346)
T 3se7_A 201 ------DSKVLIEEAVI-GTEIGCAVMGNG 223 (346)
T ss_dssp ------CSEEEEEECCC-SEEEEEEEEEET
T ss_pred ------CCcEEEEeCcC-CEEEEEEEEecC
Confidence 25799999999 799999999885
No 43
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=98.19 E-value=2.8e-06 Score=89.54 Aligned_cols=90 Identities=17% Similarity=0.224 Sum_probs=67.2
Q ss_pred hhCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785 18 PVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ 97 (525)
Q Consensus 18 ~~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~ 97 (525)
+++|||+|++..+++.+++.++++++|| |+|+|+....+| + ||.+..+.+++.++++++.....
T Consensus 130 ~~~gip~p~~~~~~~~~~~~~~~~~~g~-P~vvKp~~g~gg--~---------Gv~~v~~~~el~~~~~~~~~~~~---- 193 (433)
T 2dwc_A 130 KEAKVPTSRYMYATTLDELYEACEKIGY-PCHTKAIMSSSG--K---------GSYFVKGPEDIPKAWEEAKTKAR---- 193 (433)
T ss_dssp HTSCCCCCCEEEESSHHHHHHHHHHHCS-SEEEEECCC-----------------EEECSGGGHHHHHHC----------
T ss_pred HhcCCCCCCeeEeCCHHHHHHHHHhcCC-CEEEEECCCcCC--C---------CeEEECCHHHHHHHHHHHHhhcc----
Confidence 3689999999999999999999999997 999999754433 3 78888899999999887754311
Q ss_pred CCCCCcccCeEEEEeeeCCceeEEEEEEEcC
Q psy7785 98 TPKTGINVNKVMVAKSVNITRETYFCIVQDR 128 (525)
Q Consensus 98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~ 128 (525)
+ ....++||+|++.+.|+.+.+.+|.
T Consensus 194 ----~-~~~~~lvEe~i~~g~E~sv~~~~~~ 219 (433)
T 2dwc_A 194 ----G-SAEKIIVEEHIDFDVEVTELAVRHF 219 (433)
T ss_dssp --------CCEEEEECCCCSEEEEECCEEEE
T ss_pred ----c-CCCCEEEEccCCCCeeEEEEEEecc
Confidence 1 1256999999988899999998864
No 44
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=98.19 E-value=3e-05 Score=77.13 Aligned_cols=84 Identities=14% Similarity=0.135 Sum_probs=66.5
Q ss_pred hCCCCCCCccccCCHHHHHH--------HHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhc
Q psy7785 19 VSTVHSTDKVCLEDARTATN--------ILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIG 90 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~--------~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~ 90 (525)
++|||+|++..+++. ++.+ +++++|| |+|+|+....+| + ||.+..+.+++.++++++..
T Consensus 106 ~~gi~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~-p~vvKP~~g~~~--~---------gv~~v~~~~el~~~~~~~~~ 172 (306)
T 1iow_A 106 GAGLPVAPWVALTRA-EFEKGLSDKQLAEISALGL-PVIVKPSREGSS--V---------GMSKVVAENALQDALRLAFQ 172 (306)
T ss_dssp HTTCCBCCEEEEEHH-HHHHCCCTHHHHHHHTTCS-SEEEEETTCCTT--T---------TCEEESSGGGHHHHHHHHTT
T ss_pred HCCCCCCCeEEEchh-hhhccchhhhhhHHhccCC-CEEEEeCCCCCC--C---------CEEEeCCHHHHHHHHHHHHh
Confidence 799999999999887 7766 7788997 999999644332 2 78888899999988887642
Q ss_pred cccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCC
Q psy7785 91 HKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLH 130 (525)
Q Consensus 91 ~~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f 130 (525)
. ...++||++++ +.|+.+.+. +..+
T Consensus 173 ~-------------~~~~lvee~i~-g~e~~v~~~-~g~~ 197 (306)
T 1iow_A 173 H-------------DEEVLIEKWLS-GPEFTVAIL-GEEI 197 (306)
T ss_dssp T-------------CSEEEEEECCC-CCEEEEEEE-TTEE
T ss_pred h-------------CCCEEEEeCcC-CEEEEEEEE-CCCc
Confidence 1 25799999998 799999998 4344
No 45
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=98.17 E-value=4.8e-06 Score=86.02 Aligned_cols=87 Identities=14% Similarity=0.154 Sum_probs=68.7
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeec-cccCCCCCccCCCcceEEEeCC--cccHHHHHHHHhcccccc
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQIL-AGGRGLGHFDNGFKSGVHFTNN--VQDIPPILEKMIGHKLIT 95 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~-~~~rgK~~~~~~~~GGV~l~~~--~eea~~a~~~l~~~~~~~ 95 (525)
++|||+|++..+++.+++.++++++|| |+|||+... .+ || ||.+..+ .+|+.+++ +
T Consensus 89 ~~GIptp~~~~v~~~~e~~~~~~~~G~-P~VvKp~~~G~~--Gk---------Gv~~v~~~~~~el~~a~-------~-- 147 (355)
T 3eth_A 89 KLHLPTAPWQLLAERSEWPAVFDRLGE-LAIVKRRTGGYD--GR---------GQWRLRANETEQLPAEC-------Y-- 147 (355)
T ss_dssp HTTCCBCCEEEECCGGGHHHHHHHHCS-EEEEEESSSCCT--TT---------TEEEEETTCGGGSCGGG-------T--
T ss_pred HCccCCCCEEEECCHHHHHHHHHHcCC-CEEEEecCCCCC--CC---------eEEEEcCCCHHHHHHHh-------h--
Confidence 799999999999999999999999997 999999643 22 34 6777777 87766521 1
Q ss_pred ccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 96 KQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 96 ~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
+ .++||+|++.++|+.+.+.+|.. |-+..+.
T Consensus 148 ------~----~vivEe~I~~~~Eisv~v~~~~~--G~~~~~p 178 (355)
T 3eth_A 148 ------G----ECIVEQGINFSGEVSLVGARGFD--GSTVFYP 178 (355)
T ss_dssp ------T----TEEEEECCCCSEEEEEEEEECTT--SCEEECC
T ss_pred ------C----CEEEEEccCCCcEEEEEEEEcCC--CCEEEEC
Confidence 2 48999999989999999999875 3444443
No 46
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=98.15 E-value=4.5e-06 Score=86.70 Aligned_cols=86 Identities=17% Similarity=0.242 Sum_probs=68.9
Q ss_pred hCCCCCCCccccCCHHH----HHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccc
Q psy7785 19 VSTVHSTDKVCLEDART----ATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLI 94 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~ee----a~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~ 94 (525)
++|||+|++.++++.++ +.++++++|| |||||+....+| + ||.+..+.+++.+++++.+..
T Consensus 145 ~~Gip~p~~~~~~~~~~~~~~~~~~~~~~g~-PvvVKP~~~~~s--~---------Gv~~v~~~~el~~a~~~~~~~--- 209 (377)
T 1ehi_A 145 VNGIRNTKYIVVDPESANNWSWDKIVAELGN-IVFVKAANQGSS--V---------GISRVTNAEEYTEALSDSFQY--- 209 (377)
T ss_dssp TTTCCCCCEEEECTTGGGGCCHHHHHHHHCS-CEEEEESSCCTT--T---------TEEEECSHHHHHHHHHHHTTT---
T ss_pred HcCCCCCCEEEEeccccchHHHHHHHHhcCC-CEEEEeCCCCCC--c---------CEEEeCCHHHHHHHHHHHHhc---
Confidence 79999999999988765 6677888997 999999754332 2 788888999999888876421
Q ss_pred cccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 95 TKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 95 ~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
-..++||+++++.+|+.+++..|..
T Consensus 210 ----------~~~vlvEe~I~G~~E~~v~vl~~~~ 234 (377)
T 1ehi_A 210 ----------DYKVLIEEAVNGARELEVGVIGNDQ 234 (377)
T ss_dssp ----------CSCEEEEECCCCSCEEEEEEEESSS
T ss_pred ----------CCcEEEEcCCCCCceEEEEEEcCCC
Confidence 1469999999855999999998863
No 47
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=98.12 E-value=3.7e-06 Score=87.63 Aligned_cols=85 Identities=13% Similarity=0.151 Sum_probs=68.6
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||+|++..+++.+++.++++++|| |+|+|+....+| + ||.+..+.+++.++++++.....
T Consensus 119 ~~gip~p~~~~~~~~~~~~~~~~~~g~-P~vvKp~~g~gg--~---------Gv~~v~~~~el~~~~~~~~~~~~----- 181 (403)
T 4dim_A 119 KYNVNTARHFVVRNENELKNALENLKL-PVIVKATDLQGS--K---------GIYIAKKEEEAIDGFNETMNLTK----- 181 (403)
T ss_dssp HHTCCCCCEECCCSHHHHHHHHHTSCS-SEEEECSCC----------------CEEESSHHHHHHHHHHHHHHCS-----
T ss_pred HcCCCCCCEEEeCCHHHHHHHHhcCCC-CEEEEECCCCCC--C---------CEEEECCHHHHHHHHHHHHhcCc-----
Confidence 789999999999999999999999997 999999654443 3 78888999999999998865311
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEc
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQD 127 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D 127 (525)
...++||+|++ +.|+.+.+..+
T Consensus 182 ------~~~~lvEe~i~-g~e~sv~~~~~ 203 (403)
T 4dim_A 182 ------RDYCIVEEFIE-GYEFGAQAFVY 203 (403)
T ss_dssp ------SSCCEEEECCC-SEEEEEEEEEE
T ss_pred ------CCcEEEEEccC-CcEEEEEEEEE
Confidence 24689999998 58999988763
No 48
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=98.08 E-value=3e-06 Score=84.85 Aligned_cols=83 Identities=18% Similarity=0.278 Sum_probs=65.5
Q ss_pred hCCCCCCCccccCCHHHHHH-HHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785 19 VSTVHSTDKVCLEDARTATN-ILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ 97 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~-~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~ 97 (525)
++|||+|++.++++.+++.. +++++|| |+|+|+....+| + ||.+..+.+++.+++++++..
T Consensus 107 ~~Gip~p~~~~~~~~~~~~~~~~~~~~~-P~vvKP~~~~~s--~---------Gv~~v~~~~el~~~~~~~~~~------ 168 (307)
T 3r5x_A 107 YEGIETPDWIELTKMEDLNFDELDKLGF-PLVVKPNSGGSS--V---------GVKIVYDKDELISMLETVFEW------ 168 (307)
T ss_dssp HTTCCCCCEEEEESSSCCCHHHHHHHCS-SEEEEECC------C---------CCEEECSHHHHHHHHHHHHHH------
T ss_pred HCCCCCCCEEEEeChhhhhHHHHHhcCC-CEEEEeCCCCCC--C---------CEEEeCCHHHHHHHHHHHHhc------
Confidence 79999999999988777654 7788997 999999755433 2 788888999999998887532
Q ss_pred CCCCCcccCeEEEEeeeCCceeEEEEEEEc
Q psy7785 98 TPKTGINVNKVMVAKSVNITRETYFCIVQD 127 (525)
Q Consensus 98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D 127 (525)
...++||+|++ +.|+.+.+..+
T Consensus 169 -------~~~~lvee~i~-G~e~~v~v~~g 190 (307)
T 3r5x_A 169 -------DSEVVIEKYIK-GEEITCSIFDG 190 (307)
T ss_dssp -------CSEEEEEECCC-SEEEEEEEETT
T ss_pred -------CCCEEEECCcC-CEEEEEEEECC
Confidence 24799999999 69999999644
No 49
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=98.05 E-value=1.9e-06 Score=96.45 Aligned_cols=99 Identities=20% Similarity=0.264 Sum_probs=27.6
Q ss_pred hCCCCCCCcc--ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDKV--CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~--~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
++|||+|++. .+++.+++.++++++|| |||||+..-.+| | ||.+..+.+++.++++++......
T Consensus 125 ~~GVPvpp~~~~~~~s~~e~~~~a~~igy-PvVvKp~~gggg--k---------Gv~iv~~~~el~~a~~~~~~ea~~-- 190 (681)
T 3n6r_A 125 EANVSTVPGYMGLIEDADEAVKISNQIGY-PVMIKASAGGGG--K---------GMRIAWNDQEAREGFQSSKNEAAN-- 190 (681)
T ss_dssp TTTCCCCCC-----------------------------------------------------------------------
T ss_pred HcCcCcCCccccCcCCHHHHHHHHHhcCC-cEEEEECCCCCC--C---------CEEEECCHHHHHHHHHHHHHHHHH--
Confidence 7999999985 78899999999999997 999999754333 3 788888999999998887653220
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
..| ...++||+|+++.+|+.+.+..|.. |.++.++
T Consensus 191 ---~fg--~~~vlvEe~I~g~rei~V~v~~d~~--G~vv~l~ 225 (681)
T 3n6r_A 191 ---SFG--DDRIFIEKFVTQPRHIEIQVLCDSH--GNGIYLG 225 (681)
T ss_dssp -----------------CCSCEEEEEEEECCSS--SCCEEEE
T ss_pred ---hCC--CCcEEEEeccCCCcEEEEEEEEeCC--CCEEEEe
Confidence 011 2579999999987999999999974 5677766
No 50
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=98.04 E-value=9.1e-06 Score=84.77 Aligned_cols=84 Identities=15% Similarity=0.280 Sum_probs=66.3
Q ss_pred hCC-CCCCCccccCCH----HHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccc
Q psy7785 19 VST-VHSTDKVCLEDA----RTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKL 93 (525)
Q Consensus 19 ~~G-Ipvp~~~~~~~~----eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~ 93 (525)
++| ||+|++.++++. +++.++++++|| |||||+....++ + ||.+..+.+|+.+++++.+..
T Consensus 171 ~~G~Ipvp~~~~~~~~~~~~~~~~~~~~~lg~-PvvVKP~~ggss--~---------GV~~v~~~~el~~al~~a~~~-- 236 (383)
T 3k3p_A 171 SATTIPQVAYVALIEGEPLESKLAEVEEKLIY-PVFVKPANMGSS--V---------GISKAENRTDLKQAIALALKY-- 236 (383)
T ss_dssp HHCCCCBCCEEEEETTSCHHHHHHHHHHHCCS-SEEEEECC-----------------CEEESSHHHHHHHHHHHHHH--
T ss_pred hCCCcCCCCEEEEeCccchhHHHHHHHHhcCC-CEEEEeCCCCCC--C---------CEEEECCHHHHHHHHHHHHhC--
Confidence 789 999999999876 577788899997 999999644322 2 788888999999998887531
Q ss_pred ccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcC
Q psy7785 94 ITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDR 128 (525)
Q Consensus 94 ~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~ 128 (525)
-..++||++++ ++|+.+++..|.
T Consensus 237 -----------~~~vlVEe~I~-G~E~~v~vl~d~ 259 (383)
T 3k3p_A 237 -----------DSRVLIEQGVD-AREIEVGILGNT 259 (383)
T ss_dssp -----------CSEEEEEECCC-SEEEEEEEEESS
T ss_pred -----------CCeEEEEcCCC-CeEEEEEEEeCC
Confidence 24799999998 799999999874
No 51
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=98.04 E-value=5.7e-05 Score=77.73 Aligned_cols=85 Identities=15% Similarity=0.200 Sum_probs=65.2
Q ss_pred hCCCCCCCccccCCHHH---HHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccc
Q psy7785 19 VSTVHSTDKVCLEDART---ATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT 95 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~ee---a~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~ 95 (525)
+.|||+|++..+++.++ ..++++++|| |||||+....+ + -||.+..+.+++.+++++....
T Consensus 149 ~~Gip~p~~~~~~~~~~~~~~~~~~~~lg~-PvvVKP~~gg~--s---------~Gv~~v~~~~el~~~~~~a~~~---- 212 (357)
T 4fu0_A 149 LAGISVPKSVTFKRFNEEAAMKEIEANLTY-PLFIKPVRAGS--S---------FGITKVIEKQELDAAIELAFEH---- 212 (357)
T ss_dssp HTTCBCCCEEEEEGGGHHHHHHHHHHHCCS-SEEEEETTCSS--S---------TTCEEESSHHHHHHHHHHHTTT----
T ss_pred HCCCCCCCEEeecCCChHHHHHHHHHhcCC-CEEEEECCCCC--C---------CceEEeccHHhHHHHHHHHhcc----
Confidence 79999999998875443 3567789997 99999953322 2 2788888999999888775321
Q ss_pred ccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 96 KQTPKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 96 ~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
-..++||++++ ++|+.+++..|..
T Consensus 213 ---------~~~vlvE~~i~-G~e~~v~vl~~~~ 236 (357)
T 4fu0_A 213 ---------DTEVIVEETIN-GFEVGCAVLGIDE 236 (357)
T ss_dssp ---------CSEEEEEECCC-SEEEEEEEEESSS
T ss_pred ---------CCeEEEEEecC-CEEEEEEEEecCC
Confidence 25799999997 7999999998754
No 52
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.01 E-value=4.7e-06 Score=98.34 Aligned_cols=98 Identities=18% Similarity=0.235 Sum_probs=26.2
Q ss_pred hCCCCCCCcc--ccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDKV--CLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~--~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
++|||+|++. .+++.+++.++++++|| |||||+....+| + ||.+..+.+|+.++++++......
T Consensus 144 ~~GIPvp~~~~~~v~s~eea~~~a~~igy-PvVVKp~~g~GG--~---------Gv~iv~s~eEL~~a~~~~~~~a~~-- 209 (1165)
T 2qf7_A 144 SVGVPVVPATEPLPDDMAEVAKMAAAIGY-PVMLKASWGGGG--R---------GMRVIRSEADLAKEVTEAKREAMA-- 209 (1165)
T ss_dssp HTTCCBC-------------------------------------------------------------------------
T ss_pred HcCCCCCCeeCcCCCCHHHHHHHHHhcCC-CEEEEeCCCCCC--C---------CEEEECCHHHHHHHHHHHHHHHHh--
Confidence 7999999998 68899999999999997 999999765543 3 788888999999888887643210
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEe
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVII 137 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~ 137 (525)
..+ ...++||+|+++++|+.+.+..|.. |.++.+
T Consensus 210 ---~fg--~~~vlVEefI~gg~EisV~vl~D~~--G~vv~l 243 (1165)
T 2qf7_A 210 ---AFG--KDEVYLEKLVERARHVESQILGDTH--GNVVHL 243 (1165)
T ss_dssp ---------------CCCSSEEEEEEEEEECTT--SCEEEE
T ss_pred ---hcC--CCcEEEEEeccCCcEEEEEEEEcCC--CcEEEE
Confidence 011 2569999999988999999999975 455543
No 53
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=97.98 E-value=6e-06 Score=97.63 Aligned_cols=99 Identities=20% Similarity=0.306 Sum_probs=24.6
Q ss_pred hCCCCCCCc-cccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785 19 VSTVHSTDK-VCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ 97 (525)
Q Consensus 19 ~~GIpvp~~-~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~ 97 (525)
++|||+|++ .++++.+++.++++++|| |||||+....+| | ||.+..+.+|+.++++++......
T Consensus 154 ~aGIPvpp~~~~v~s~eea~~~a~~iGy-PvVVKP~~GgGG--k---------GV~iv~s~eEL~~a~~~~~~~a~~--- 218 (1236)
T 3va7_A 154 RAKVPLVPGSGLIKDAKEAKEVAKKLEY-PVMVKSTAGGGG--I---------GLQKVDSEDDIERVFETVQHQGKS--- 218 (1236)
T ss_dssp HTTCCCCC------------------------------------------------------------------------
T ss_pred HcCCCCCCeeEecCCHHHHHHHHHHcCC-CEEEEeCCCCCC--C---------CEEEECCHHHHHHHHHHHHHHHHh---
Confidence 799999884 788999999999999997 999999755443 3 788888999999998887643210
Q ss_pred CCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
......++||+|+++.+|+.+.+..|.. |.++.++
T Consensus 219 ----~~~~~~vlVEeyI~G~rEisV~vl~Dg~--g~vv~l~ 253 (1236)
T 3va7_A 219 ----YFGDAGVFMERFVNNARHVEIQMMGDGF--GKAIAIG 253 (1236)
T ss_dssp ------------------CCEEEEEEEEEESS--SCEEEEE
T ss_pred ----ccCCCcEEEeeccCCCeEEEEEEEecCC--ceEEEEe
Confidence 0112569999999978999999999975 4677765
No 54
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=97.97 E-value=7.4e-06 Score=92.37 Aligned_cols=85 Identities=22% Similarity=0.201 Sum_probs=68.1
Q ss_pred hCCCCCCCccccCCHHHHHHHH-HhcCCCcEEEEEeeccccCCCCCccCCCcceEEEe----CCcccHHHHHHHHhcccc
Q psy7785 19 VSTVHSTDKVCLEDARTATNIL-KDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFT----NNVQDIPPILEKMIGHKL 93 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a-~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~----~~~eea~~a~~~l~~~~~ 93 (525)
++|||||++.++++.+++.+++ +++|| |||||+....+ || ||.+. .+.+++.++++.....
T Consensus 499 ~~GIPvP~~~~~~~~~ea~~~~~~~~g~-PvVVKP~~g~~--G~---------GV~iv~~~v~~~eel~~al~~a~~~-- 564 (757)
T 3ln7_A 499 KAGFNVPQSVEFTSLEKAVASYALFENR-AVVIKPKSTNY--GL---------GITIFQQGVQNREDFAKALEIAFRE-- 564 (757)
T ss_dssp HHTCCCCCEEEESCHHHHHHGGGGSSSS-CEEEEESSCST--TT---------TCEECSSCCCCHHHHHHHHHHHHHH--
T ss_pred HCCcCCCCEEEECCHHHHHHHHHHhcCC-CEEEEeCCCCC--CC---------CeEEecCCCCCHHHHHHHHHHHHhc--
Confidence 7999999999999999997777 78897 99999975543 34 78777 6888999888876421
Q ss_pred ccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 94 ITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 94 ~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
...++||+|++ ++|+.+.+..|..
T Consensus 565 -----------~~~vlVEefI~-G~Ei~v~Vlggkv 588 (757)
T 3ln7_A 565 -----------DKEVMVEDYLV-GTEYRFFVLGDET 588 (757)
T ss_dssp -----------CSSEEEEECCC-SEEEEEEEETTEE
T ss_pred -----------CCcEEEEEcCC-CcEEEEEEECCEE
Confidence 14599999998 6999999875533
No 55
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=97.96 E-value=1.4e-05 Score=82.92 Aligned_cols=84 Identities=12% Similarity=0.152 Sum_probs=64.8
Q ss_pred hCCCCCCCccccCCHHH----HHHHHHhcCCCc-EEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccc
Q psy7785 19 VSTVHSTDKVCLEDART----ATNILKDLNFKE-YVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKL 93 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~ee----a~~~a~~lg~~P-vVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~ 93 (525)
++|||+|++.++++.++ ...+++++|| | ||||+....++ -||.+..+.+|+.+++++.+..
T Consensus 150 ~~GIp~p~~~~~~~~~~~~~~~~~~~~~lg~-P~vvVKP~~ggss-----------~Gv~~v~~~~eL~~a~~~a~~~-- 215 (372)
T 3tqt_A 150 AGGIPVVDWHTLSPRDATEGVYQRLLDRWGT-SELFVKAVSLGSS-----------VATLPVKTETEFTKAVKEVFRY-- 215 (372)
T ss_dssp HTTCCBCCCEEECTTSCCTTHHHHHHHHC----CEEEEESSCCSG-----------GGEEEECSHHHHHHHHHHHTTT--
T ss_pred HCCcCCCCEEEEechhhhhhHHHHHHHhcCC-CeEEEEECCCCCC-----------CCEEEECCHHHHHHHHHHHHhc--
Confidence 79999999999987764 4567889997 9 99999644221 2788889999999888876421
Q ss_pred ccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcC
Q psy7785 94 ITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDR 128 (525)
Q Consensus 94 ~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~ 128 (525)
-..++||++++ ++|+.+++..|.
T Consensus 216 -----------~~~vlVEe~I~-G~E~~v~vl~~~ 238 (372)
T 3tqt_A 216 -----------DDRLMVEPRIR-GREIECAVLGNG 238 (372)
T ss_dssp -----------CSCEEEEECCC-SEEEEEEEEESS
T ss_pred -----------CCCEEEECCCC-CEEEEEEEEeCC
Confidence 24699999998 799999999886
No 56
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=97.94 E-value=2.7e-06 Score=95.04 Aligned_cols=99 Identities=16% Similarity=0.198 Sum_probs=73.1
Q ss_pred hCCCCCCCccc--cCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDKVC--LEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~~--~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
++|||+|++.. +++.+++.++++++|| |||||+..-.+| | ||.+..+.+++.++++++......
T Consensus 151 ~~GVpvpp~~~~~~~s~~e~~~~a~~igy-PvvvKp~~G~Gg--~---------Gv~iv~~~~el~~a~~~~~~ea~~-- 216 (675)
T 3u9t_A 151 EAGVPLVPGYHGEAQDLETFRREAGRIGY-PVLLKAAAGGGG--K---------GMKVVEREAELAEALSSAQREAKA-- 216 (675)
T ss_dssp HTTCCBCCCCCSCCCCTTHHHHHHHHSCS-SBCCBCCC-----------------CCCBCCTTTHHHHHSCCCC------
T ss_pred HcCcCcCCccccCCCCHHHHHHHHHhCCC-cEEEEECCCCCC--c---------cEEEECCHHHHHHHHHHHHHHHHH--
Confidence 79999999876 7899999999999997 999999644333 3 788888999999888776543210
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
..| ...++||+|+++.+|+.+.+..|.. |.++.++
T Consensus 217 ---~fg--~~~vlvEeyI~g~reiev~v~~d~~--G~vv~l~ 251 (675)
T 3u9t_A 217 ---AFG--DARMLVEKYLLKPRHVEIQVFADRH--GHCLYLN 251 (675)
T ss_dssp ---------CCCBCCBCCSSCBCEEEEEEECSS--SCEEEEE
T ss_pred ---hcC--CCcEEEEeecCCCcEEEEEEEEcCC--CCEEEEe
Confidence 011 2579999999988999999999974 5676665
No 57
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=97.92 E-value=1.4e-05 Score=82.91 Aligned_cols=85 Identities=15% Similarity=0.188 Sum_probs=67.5
Q ss_pred hCCCCCCCccccCCHHH--HHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDKVCLEDART--ATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~ee--a~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
++|||+|++.++++.++ +....+++|| |||||+....++ + ||.+..+.+|+.+++++....
T Consensus 161 ~~GIp~p~~~~~~~~~~~~~~~~~~~lg~-PvvVKP~~ggss--~---------GV~~v~~~~eL~~a~~~a~~~----- 223 (373)
T 3lwb_A 161 ADGLPVGAYAVLRPPRSTLHRQECERLGL-PVFVKPARGGSS--I---------GVSRVSSWDQLPAAVARARRH----- 223 (373)
T ss_dssp HTTCCBCCEEEECTTCCCCCHHHHHHHCS-CEEEEESBCSTT--T---------TCEEECSGGGHHHHHHHHHTT-----
T ss_pred HcCcCCCCEEEEECcccchhHHHHHhcCC-CEEEEeCCCCCC--C---------CEEEeCCHHHHHHHHHHHHhc-----
Confidence 79999999999987765 2345778997 999999644322 2 788888999999998887531
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
-..++||++++ ++|+.+++..|..
T Consensus 224 --------~~~vlVEe~I~-G~E~~v~vl~~~~ 247 (373)
T 3lwb_A 224 --------DPKVIVEAAIS-GRELECGVLEMPD 247 (373)
T ss_dssp --------CSSEEEEECCE-EEEEEEEEEECTT
T ss_pred --------CCCEEEeCCCC-CeEEEEEEEECCC
Confidence 24699999998 7999999998864
No 58
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=97.92 E-value=2e-05 Score=81.24 Aligned_cols=85 Identities=14% Similarity=0.234 Sum_probs=67.8
Q ss_pred hCCCCCCCccccCCHH-------HHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcc
Q psy7785 19 VSTVHSTDKVCLEDAR-------TATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGH 91 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~e-------ea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~ 91 (525)
++|||+|++..+++.+ ++.++++++|| |||||+....+| + ||.+..+.+++.+++++....
T Consensus 139 ~~Gip~p~~~~~~~~~~~~~~~~~~~~~~~~~g~-PvvvKP~~g~~s--~---------Gv~~v~~~~el~~a~~~~~~~ 206 (364)
T 2i87_A 139 HRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNY-PVFVKPANLGSS--V---------GISKCNNEAELKEGIKEAFQF 206 (364)
T ss_dssp HHTCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCS-SEEEEESSCSSC--T---------TCEEESSHHHHHHHHHHHHTT
T ss_pred HCCCCCCCEEEEechhhcccchhHHHHHHHhcCC-CEEEEeCCCCCC--C---------CEEEECCHHHHHHHHHHHHhc
Confidence 7899999999988776 46677788997 999999644332 2 788888999999888876421
Q ss_pred ccccccCCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 92 KLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 92 ~~~~~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
-..++||++++ +.|+.+.+..|..
T Consensus 207 -------------~~~~lvEe~I~-G~E~~v~vl~~~~ 230 (364)
T 2i87_A 207 -------------DRKLVIEQGVN-AREIEVAVLGNDY 230 (364)
T ss_dssp -------------CSEEEEEECCC-CEEEEEEEEESSS
T ss_pred -------------CCeEEEEeCcc-CeEEEEEEEcCCC
Confidence 25799999998 6999999998853
No 59
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=97.83 E-value=6.4e-06 Score=80.74 Aligned_cols=86 Identities=12% Similarity=0.137 Sum_probs=60.3
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHH--hccccccc
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKM--IGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l--~~~~~~~~ 96 (525)
++|||+|++.++++.+++.++++++|| |+|+|+....+| + ||.+..+.+++.++++++ +..
T Consensus 98 ~~gi~~p~~~~~~~~~~~~~~~~~~~~-p~vvKp~~g~~~--~---------gv~~v~~~~el~~~~~~~~~~~~----- 160 (280)
T 1uc8_A 98 KAGLPQPKTALATDREEALRLMEAFGY-PVVLKPVIGSWG--R---------LLAXXXXXXXXXXXXXXKEVLGG----- 160 (280)
T ss_dssp HTTCCCCCEEEESSHHHHHHHHHHHCS-SEEEECSBCCBC--S---------HHHHHHHHHC------------C-----
T ss_pred HcCcCCCCeEeeCCHHHHHHHHHHhCC-CEEEEECCCCCc--c---------cceecccccccchhhhhHhhhcc-----
Confidence 799999999999999999999999997 999999654432 2 666666777877776665 211
Q ss_pred cCCCCCcccCeEEEEeeeCC-ceeEEEEEEEc
Q psy7785 97 QTPKTGINVNKVMVAKSVNI-TRETYFCIVQD 127 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~-~~E~~vgv~~D 127 (525)
. ....++||+++++ +.|+.+.+..+
T Consensus 161 ----~--~~~~~lvqe~i~~~~~e~~v~v~~~ 186 (280)
T 1uc8_A 161 ----F--QHQLFYIQEYVEKPGRDIRVFVVGE 186 (280)
T ss_dssp ----T--TTTCEEEEECCCCSSCCEEEEEETT
T ss_pred ----c--CCCcEEEEeccCCCCceEEEEEECC
Confidence 0 1256999999987 78998888744
No 60
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=97.81 E-value=2.3e-05 Score=80.97 Aligned_cols=77 Identities=17% Similarity=0.279 Sum_probs=59.7
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeecc-ccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccccc
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILA-GGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQ 97 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~-~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~ 97 (525)
++|||+|++..+++.++ +++++|| |+|+|+.... +| + ||.+..+.+++.++++
T Consensus 110 ~~gip~p~~~~~~~~~~---~~~~~~~-P~vvKp~~~~y~g--~---------Gv~~v~~~~el~~~~~----------- 163 (380)
T 3ax6_A 110 KNGIPVPEYKLVKDLES---DVREFGF-PVVQKARKGGYDG--R---------GVFIIKNEKDLENAIK----------- 163 (380)
T ss_dssp HTTCCCCCEEECSSHHH---HHHTTCS-SEEEEESCCC----------------EEEECSGGGGGGCCC-----------
T ss_pred HcCCCCCCeEEeCCHHH---HHHhcCC-CEEEEecCCCCCC--C---------CeEEECCHHHHHHHhc-----------
Confidence 79999999999999887 6778997 9999997553 43 3 7888888776542211
Q ss_pred CCCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 98 TPKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 98 ~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
..++||++++.+.|+.+.+..|..
T Consensus 164 --------~~~lvEe~i~~g~e~sv~~~~~~~ 187 (380)
T 3ax6_A 164 --------GETYLEEFVEIEKELAVMVARNEK 187 (380)
T ss_dssp --------SSEEEEECCCEEEEEEEEEEECSS
T ss_pred --------CCEEEEeccCCCeeEEEEEEECCC
Confidence 469999999878999999999854
No 61
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=97.79 E-value=8e-05 Score=79.59 Aligned_cols=117 Identities=24% Similarity=0.270 Sum_probs=88.0
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCC-----CCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHH
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGG-----VNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAK 375 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~-----a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~ 375 (525)
.|+||+||-||+.+....|.+...|+-....+-++++ ...-.+.++++.+.+||++++|++..-+ . .+.+++
T Consensus 112 ~G~vaivSqSGal~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E~-~--~e~~~~ 188 (480)
T 3dmy_A 112 EGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKP-P--AEAVRL 188 (480)
T ss_dssp EEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEESC-C--CHHHHH
T ss_pred CCCEEEEeccHHHHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEec-C--CcHHHH
Confidence 5799999999999999999999999877667777766 2445699999999999999999976533 1 244555
Q ss_pred HHHHHHHhcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHH
Q psy7785 376 GLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNA 428 (525)
Q Consensus 376 ~i~~a~~~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~ 428 (525)
.++++++. .+|||++...|.... + +++.|+... +++++....+..
T Consensus 189 ~f~~~ar~--~~KPVV~~k~Grs~~-g---~r~~Gvirv--~~~~el~~~a~~ 233 (480)
T 3dmy_A 189 KIVNAMKA--TGKPTVALFLGYTPA-V---ARDENVWFA--SSLDEAARLACL 233 (480)
T ss_dssp HHHHHHHH--HCSCEEEEETTCCCS-S---SEETTEEEE--SSHHHHHHHHHH
T ss_pred HHHHHHHh--CCCCEEEEEeCCCCc-c---cccCCEEEE--CCHHHHHHHHHH
Confidence 66666655 579999988775221 1 677887766 777776665543
No 62
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=97.76 E-value=2.8e-05 Score=79.43 Aligned_cols=83 Identities=10% Similarity=0.166 Sum_probs=65.6
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||+|++.++++.+++. .+++|| |||||+....++ + ||.+..+.+++.++++++...
T Consensus 142 ~~Gip~p~~~~~~~~~~~~--~~~~~~-PvvvKP~~~~~s--~---------Gv~~v~~~~el~~a~~~~~~~------- 200 (343)
T 1e4e_A 142 NAGIATPAFWVINKDDRPV--AATFTY-PVFVKPARSGSS--F---------GVKKVNSADELDYAIESARQY------- 200 (343)
T ss_dssp HTTCBCCCEEEECTTCCCC--GGGSCS-CEEEEESSCCTT--T---------TCEEECSGGGHHHHHHHHTTT-------
T ss_pred HCCCCcCCEEEEechhhhh--hhccCC-CEEEEeCCCCCC--C---------CEEEeCCHHHHHHHHHHHHhc-------
Confidence 7999999999998877653 267897 999999654332 2 688888999999888876421
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
-..++||++++ ++|+.+.+..|..
T Consensus 201 ------~~~~lvEe~I~-G~E~~v~vl~~~~ 224 (343)
T 1e4e_A 201 ------DSKILIEQAVS-GCEVGCAVLGNSA 224 (343)
T ss_dssp ------CSSEEEEECCC-SEEEEEEEEEETT
T ss_pred ------CCcEEEEeCcC-CeEEEEEEEeCCC
Confidence 24699999998 7999999998863
No 63
>3mwd_B ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_B*
Probab=97.76 E-value=0.00011 Score=74.97 Aligned_cols=122 Identities=18% Similarity=0.254 Sum_probs=87.2
Q ss_pred cCCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHhcCCCccEEEEEe-cccccChHHHHHHH
Q psy7785 300 MDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEE-SIIQAFRIISSDSNVKCILVNV-FGGIVNCATIAKGL 377 (525)
Q Consensus 300 ~~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~-~~~~al~~ll~dp~vd~vlv~~-~~~~~~~~~ia~~i 377 (525)
..|+||+||-||+++....|.+...|+-..-.+-++++.-.+ .+.++++.+.+||++++|++.. .++..+ +.+
T Consensus 167 ~~G~vgivSqSG~l~~~i~~~~~~~g~G~S~~VsiGn~~~~d~~~~D~l~~~~~Dp~T~~I~l~gEi~g~~e-----~~~ 241 (334)
T 3mwd_B 167 RPGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEE-----YKI 241 (334)
T ss_dssp SCCSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHH-----HHH
T ss_pred CCCCEEEEeCchHHHHHHHHHHHhcCCCeEEEEECCCCccCCCCHHHHHHHHhcCCCCCEEEEEEecCChHH-----HHH
Confidence 357999999999999999999999999877888888873222 3899999999999999988752 233322 334
Q ss_pred HHHHHhcCCCCcEEEEeCCc-ch-----------------H-----HHHHHHhhCCCCccccCCHHHHHHHHHH
Q psy7785 378 VNACKSFKLSIPLVVRLEGT-NV-----------------Q-----EGKRILDESKLPLIFASDLDEAASLVNA 428 (525)
Q Consensus 378 ~~a~~~~~~~kPivv~~~g~-~~-----------------~-----~~~~~L~~~Gvpvf~~~s~~~Av~Al~~ 428 (525)
++++++...+|||++...|. .. . .-...|+++|+.+. +++++-...+.+
T Consensus 242 ~~~~r~~~~~KPVV~~kaGrs~~~~g~~aa~sHtGalag~~~~~a~~~~aa~~~aGv~~v--~~~~el~~~~~~ 313 (334)
T 3mwd_B 242 CRGIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVP--RSFDELGEIIQS 313 (334)
T ss_dssp HHHHHTTSCCSCEEEEEECTTCC----------------CGGGSHHHHHHHHHHTTCBCC--SSGGGHHHHHHH
T ss_pred HHHHHhhcCCCCEEEEEcCCCcccccccccccchhhhccCCCccHHHHHHHHHHcCCeEc--CCHHHHHHHHHH
Confidence 44555433689999875442 11 1 23457899999887 666665555544
No 64
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=97.75 E-value=3.9e-05 Score=79.45 Aligned_cols=77 Identities=18% Similarity=0.313 Sum_probs=60.0
Q ss_pred hCCCCCCCccccCCHH--HHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDKVCLEDAR--TATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~e--ea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
++|||+|++.++++.+ ++.+ ++++|| |||||+....++ + ||.+..+.+++.+++++.+..
T Consensus 159 ~~Gip~p~~~~~~~~~~~~~~~-~~~lg~-PvvVKP~~g~ss--~---------Gv~~v~~~~el~~a~~~~~~~----- 220 (367)
T 2pvp_A 159 DLGIKTLDYVLLNEKNRANALD-LMNFNF-PFIVKPSNAGSS--L---------GVNVVKEEKELIYALDSAFEY----- 220 (367)
T ss_dssp HHTCBCCCCEEECTTTGGGHHH-HCCSCS-CEEEEESSCCTT--T---------TCEEESSTTSHHHHHHHHTTT-----
T ss_pred HCCcCCCCEEEEeCCchHHHHH-HhccCC-CEEEEECCCCCC--C---------CEEEECCHHHHHHHHHHHHhc-----
Confidence 7899999999998877 6766 778997 999999644322 2 677888999999888876421
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEE
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETY 121 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~ 121 (525)
-..++||+++++.+|+.
T Consensus 221 --------~~~vlVEe~I~G~~E~s 237 (367)
T 2pvp_A 221 --------SKEVLIEPFIQGVKEYN 237 (367)
T ss_dssp --------CSCEEEEECCTTCEEEE
T ss_pred --------CCcEEEEeCCCCCceee
Confidence 24699999998559944
No 65
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=97.74 E-value=0.00026 Score=70.92 Aligned_cols=121 Identities=17% Similarity=0.267 Sum_probs=87.3
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHH
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEE-SIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVN 379 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~-~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~ 379 (525)
.|+||+||-||+.+....|.+...|+-..-.+-+++++..+ .+.++++.+.+||++++|++..-+. .+.+..+....+
T Consensus 144 ~G~va~vsqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~t~~I~l~~E~~-~~~~~~~~~~~~ 222 (288)
T 1oi7_A 144 RGRVGIISRSGTLTYEAAAALSQAGLGTTTTVGIGGDPVIGTTFKDLLPLFNEDPETEAVVLIGEIG-GSDEEEAAAWVK 222 (288)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSCCSSCHHHHHHHHHTCTTCCEEEEEECSS-SSHHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeC-CCHHHHHHHHHH
Confidence 47899999999999999999999999888888888887432 4889999999999999998764432 223333333333
Q ss_pred HHHhcCCCCcEEEEeCCcch--------------------HHHHHHHhhCCCCccccCCHHHHHHHHHH
Q psy7785 380 ACKSFKLSIPLVVRLEGTNV--------------------QEGKRILDESKLPLIFASDLDEAASLVNA 428 (525)
Q Consensus 380 a~~~~~~~kPivv~~~g~~~--------------------~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~ 428 (525)
+ . .+|||++...|... ......|+++|+... +++++-...+.+
T Consensus 223 ~--~--~~KPVv~~k~G~~~~~~~~~~Htgal~~~~~g~~~~~~aa~~~aGv~~~--~~~~el~~~~~~ 285 (288)
T 1oi7_A 223 D--H--MKKPVVGFIGGRSAPKGKRMGHAGAIIMGNVGTPESKLRAFAEAGIPVA--DTIDEIVELVKK 285 (288)
T ss_dssp H--H--CCSCEEEEESCC------------------CCSHHHHHHHHHHHTCCBC--SSHHHHHHHHHH
T ss_pred h--c--CCCCEEEEEecCCCCccccCcchhhcccCCCCCHHHHHHHHHHCCCeEe--CCHHHHHHHHHH
Confidence 3 2 57999987655311 112447778888877 777776665544
No 66
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=97.67 E-value=2.5e-05 Score=82.11 Aligned_cols=92 Identities=9% Similarity=0.032 Sum_probs=64.7
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||+|++..+++.+++.+ .++|| |+|||+....+| + ||.+..+.+|+.++++++..........
T Consensus 122 ~~gip~p~~~~~~~~~~~~~--~~~g~-P~vvKp~~g~gs--~---------Gv~~v~~~~el~~a~~~~~~~~~~~~~~ 187 (425)
T 3vot_A 122 QNGLNTPVFHEFHTLADLEN--RKLSY-PLVVKPVNGFSS--Q---------GVVRVDDRKELEEAVRKVEAVNQRDLNR 187 (425)
T ss_dssp HTTCCCCCEEEESSGGGGTT--CCCCS-SEEEEESCC----------------CEEECSHHHHHHHHHHHHHHTTSSHHH
T ss_pred HCCCCCCceeccCcHHHHHH--hhcCC-cEEEEECCCCCC--C---------CceEechHHHHHHHHHHHHhhhhhhhhh
Confidence 79999999999999988753 57897 999999644332 3 7889999999999998876421100000
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEc
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQD 127 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D 127 (525)
.+..-..++||++++ +.|+.+.+..+
T Consensus 188 --~~~~~~~~lvEe~i~-G~e~sv~~~~~ 213 (425)
T 3vot_A 188 --FVHGKTGIVAEQFID-GPEFAIETLSI 213 (425)
T ss_dssp --HHTTCCCEEEEECCC-SCEEEEEEEEE
T ss_pred --hccCCCcEEEEEEec-CcEEEEEEEEe
Confidence 001135799999998 67998877765
No 67
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=97.65 E-value=8.4e-05 Score=74.95 Aligned_cols=85 Identities=12% Similarity=0.149 Sum_probs=48.6
Q ss_pred hCCCCCCCccccCCHHHHHHHH--HhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDKVCLEDARTATNIL--KDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a--~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
++|||+|++.. +.+++.++. ++++| |+|+|+....+| + ||.+..+.+++.+++++
T Consensus 124 ~~gip~p~~~~--~~~~~~~~~~~~~~~~-P~vvKp~~g~g~--~---------gv~~v~~~~el~~~~~~--------- 180 (331)
T 2pn1_A 124 RQGIAHARTYA--TMASFEEALAAGEVQL-PVFVKPRNGSAS--I---------EVRRVETVEEVEQLFSK--------- 180 (331)
T ss_dssp HHTCCCCCEES--SHHHHHHHHHTTSSCS-CEEEEESBC-----------------------------------------
T ss_pred HcCCCCCcEEe--cHHHhhhhhhcccCCC-CEEEEeCCCCCC--C---------CeEEeCCHHHHHHHHHh---------
Confidence 79999999865 567776666 57887 999999654332 2 78777788777655332
Q ss_pred cCCCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEE
Q psy7785 97 QTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVI 136 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~ 136 (525)
...++||+++++ .|+.+.+..|+.. |.++.
T Consensus 181 --------~~~~lvee~i~G-~e~~v~~~~d~~~-G~~~~ 210 (331)
T 2pn1_A 181 --------NTDLIVQELLVG-QELGVDAYVDLIS-GKVTS 210 (331)
T ss_dssp ----------CEEEEECCCS-EEEEEEEEECTTT-CCEEE
T ss_pred --------CCCeEEEecCCC-cEEEEEEEEecCC-CeEEE
Confidence 136999999985 9999999998333 44443
No 68
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET: GDP; 2.35A {Thermus aquaticus}
Probab=97.65 E-value=6.1e-05 Score=78.86 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEec
Q psy7785 445 TNVQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEG 492 (525)
Q Consensus 445 ~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~ 492 (525)
++|+++|++|++||||+ .+++|.+||.+ +++++ |||||+|.++
T Consensus 3 L~E~~aK~lL~~~GIpvp~~~~~~s~eea~~---aa~~l--G~PvVvKa~~ 48 (397)
T 3ufx_B 3 LHEYQAKEILARYGVPVPPGKVAYTPEEAKR---IAEEF--GKRVVIKAQV 48 (397)
T ss_dssp CCHHHHHHHHHHTTCCCCCEEEESSHHHHHH---HHHHH--TSCEEEEECC
T ss_pred CCHHHHHHHHHHCCCCCCCeEEECCHHHHHH---HHHHc--CCCEEEEEcc
Confidence 47999999999999999 89999999998 56775 9999999987
No 69
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=97.62 E-value=0.00012 Score=73.88 Aligned_cols=118 Identities=17% Similarity=0.182 Sum_probs=83.9
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCH-HHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHH
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNE-ESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVN 379 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~-~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~ 379 (525)
.|+||+||-||+.+....|.+...|+-....+-+++++.. -.+.++++.+.+||++++|++..-+. .+.+..++.+.+
T Consensus 152 ~G~va~vSqSG~l~~~~~~~~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~-g~~e~~~~~f~~ 230 (305)
T 2fp4_A 152 KGRIGIVSRSGTLTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIG-GNAEENAAEFLK 230 (305)
T ss_dssp EEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESS-SSHHHHHHHHHH
T ss_pred CCCEEEEecchHHHHHHHHHHHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecC-CchhhHHHHHHH
Confidence 5789999999999999999999999988888888888642 24889999999999999998754332 222334445555
Q ss_pred HHHhcCCCCcEEEEeCCcc--------------------hHHHHHHHhhCCCCccccCCHHH
Q psy7785 380 ACKSFKLSIPLVVRLEGTN--------------------VQEGKRILDESKLPLIFASDLDE 421 (525)
Q Consensus 380 a~~~~~~~kPivv~~~g~~--------------------~~~~~~~L~~~Gvpvf~~~s~~~ 421 (525)
+.+....+|||++...|.. .......|+++|+... +++++
T Consensus 231 ~~~~~~~~KPVv~~k~G~s~~~g~~~~Htgal~~~~~g~~~~~~aa~~~aGv~~v--~~~~e 290 (305)
T 2fp4_A 231 QHNSGPKSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKITALQSAGVVVS--MSPAQ 290 (305)
T ss_dssp HHSCSTTCCCEEEEEECTTCCTTCCCSSTTCCCBTTBCCHHHHHHHHHHTTCEEC--SSTTC
T ss_pred HHHHhcCCCCEEEEEecCCccccccccchhhhhccCCccHHHHHHHHHHCCCeEe--CCHHH
Confidence 4443224799998655421 1112457788888766 44443
No 70
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=97.60 E-value=3.9e-05 Score=77.76 Aligned_cols=83 Identities=14% Similarity=0.216 Sum_probs=64.1
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||+|++.++++.++. +. ++|| |+|||+....+| + ||.+..+.+++.+++++.+..
T Consensus 128 ~~Gip~p~~~~~~~~~~~--~~-~~g~-PvvvKP~~g~~s--~---------Gv~~v~~~~el~~a~~~~~~~------- 185 (322)
T 2fb9_A 128 QAGVPVVPWVAVRKGEPP--VV-PFDP-PFFVKPANTGSS--V---------GISRVERFQDLEAALALAFRY------- 185 (322)
T ss_dssp HTTCCCCCEEEEETTSCC--CC-CSCS-CEEEEETTCCTT--T---------TCEEESSHHHHHHHHHHHTTT-------
T ss_pred HCCCCCCCEEEEECchhh--hh-ccCC-CEEEEeCCCCCC--C---------CEEEECCHHHHHHHHHHHHhc-------
Confidence 799999999999877652 22 7887 999999644322 2 788888999999888876421
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
-..++||+++++.+|+.+++..|..
T Consensus 186 ------~~~vlvEe~I~G~~E~~v~vl~~~~ 210 (322)
T 2fb9_A 186 ------DEKAVVEKALSPVRELEVGVLGNVF 210 (322)
T ss_dssp ------CSEEEEEECCSSCEEEEEEEESSSS
T ss_pred ------CCeEEEEeCCCCCeeEEEEEEeCCC
Confidence 2579999999855999999997753
No 71
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=97.58 E-value=9.3e-05 Score=76.54 Aligned_cols=82 Identities=11% Similarity=0.110 Sum_probs=59.1
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||+|++ +++++++ ++ |||||+....+ || ||.+..|.+|+.+++++++....
T Consensus 134 ~~GIptp~~--~~~~~e~-------~~-PvVVK~~~~a~--Gk---------Gv~v~~s~ee~~~a~~~~~~~~~----- 187 (361)
T 2r7k_A 134 EAGLRVPKK--YESPEDI-------DG-TVIVKFPGARG--GR---------GYFIASSTEEFYKKAEDLKKRGI----- 187 (361)
T ss_dssp HTTCCCCCE--ESSGGGC-------CS-CEEEECSCCCC--------------EEEESSHHHHHHHHHHHHHTTS-----
T ss_pred HcCcCCCCE--eCCHHHc-------CC-CEEEeeCCCCC--CC---------CEEEECCHHHHHHHHHHHHhccc-----
Confidence 899999975 6777765 56 99999987765 45 89999999999999999875421
Q ss_pred CCCCcc-cCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 99 PKTGIN-VNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 99 ~~~g~~-~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
.+.. ...++||||++ +.|+++....++.
T Consensus 188 --~~~~~~~~viIEEfl~-G~e~s~~~f~~~~ 216 (361)
T 2r7k_A 188 --LTDEDIANAHIEEYVV-GTNFCIHYFYSPL 216 (361)
T ss_dssp --CCHHHHHHCEEEECCC-SEEEEEEEEEETT
T ss_pred --cccCCCCeEEEEeccc-eEEeeEEEEeccc
Confidence 1111 24699999998 6888754555544
No 72
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=97.48 E-value=0.00035 Score=70.24 Aligned_cols=121 Identities=14% Similarity=0.251 Sum_probs=84.5
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHH
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEE-SIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVN 379 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~-~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~ 379 (525)
.|+||+||-||+.+....|.+...|+-..-.+-+++++..+ .+.++++.+.+||++++|++..-.. .+.+..+..+.+
T Consensus 151 ~G~va~vSqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~~-~~~~~~~~~~~~ 229 (297)
T 2yv2_A 151 EGGVAVVSRSGTLTYEISYMLTRQGIGQSTVIGIGGDPIVGLSFTEALKLFQEDPQTEALVLIGEIG-GDMEERAAEMIK 229 (297)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEECSS-SSHHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCCeeEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeC-CCHHHHHHHHHH
Confidence 57899999999999999999999999888888888887432 4889999999999999998764432 223333333333
Q ss_pred HHHhcCCCCcEEEEeCCcch--------------------HHHHHHHhhCCCCccccCCHHHHHHHHH
Q psy7785 380 ACKSFKLSIPLVVRLEGTNV--------------------QEGKRILDESKLPLIFASDLDEAASLVN 427 (525)
Q Consensus 380 a~~~~~~~kPivv~~~g~~~--------------------~~~~~~L~~~Gvpvf~~~s~~~Av~Al~ 427 (525)
+ ...+|||++...|... ......|+++|+... +++++-...+.
T Consensus 230 ~---~~~~KPVv~~k~G~s~~~~~~~sHtgal~~~~~g~~~~~~aa~~~aGv~~v--~~~~el~~~~~ 292 (297)
T 2yv2_A 230 K---GEFTKPVIAYIAGRTAPPEKRMGHAGAIIMMGTGTYEGKVKALREAGVEVA--ETPFEVPELVR 292 (297)
T ss_dssp T---TSCCSCEEEEESCCC------------------CSHHHHHHHHHTTTCEEE--SSGGGHHHHHH
T ss_pred h---ccCCCCEEEEEeCCCCccccccCCccccccCCCCCHHHHHHHHHHcCCeEe--CCHHHHHHHHH
Confidence 2 1258999987665321 112346677777766 66555444443
No 73
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=97.43 E-value=0.00042 Score=69.61 Aligned_cols=119 Identities=14% Similarity=0.239 Sum_probs=82.4
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHH
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEE-SIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVN 379 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~-~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~ 379 (525)
.|+||+||-||+.+....|.+...|+-....+-+++++..+ .+.++++.+.+||++++|++..-+. .+.+..+ .+
T Consensus 150 ~G~va~vSqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~~~~D~~T~~I~l~~E~~-g~~~~~~---~~ 225 (294)
T 2yv1_A 150 EGSVGMVSRSGTLTYEIAHQIKKAGFGVSTCVGIGGDPIVGLRYKEVLDLFEKDDETEAIVMIGEIG-GGAEEEA---AK 225 (294)
T ss_dssp EEEEEEEESCSHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCSEEEEEEESS-SSHHHHH---HH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCCeEEEEeeCCCCCCCCCHHHHHHHHhcCCCCCEEEEEEeeC-CCHHHHH---HH
Confidence 47899999999999999999999999888888888887432 4889999999999999998764332 2222222 23
Q ss_pred HHHhcCCCCcEEEEeCCcch--------------------HHHHHHHhhCCCCccccCCHHHHHHHHH
Q psy7785 380 ACKSFKLSIPLVVRLEGTNV--------------------QEGKRILDESKLPLIFASDLDEAASLVN 427 (525)
Q Consensus 380 a~~~~~~~kPivv~~~g~~~--------------------~~~~~~L~~~Gvpvf~~~s~~~Av~Al~ 427 (525)
.++. .+|||++...|... ......|+++|+... +++++-...+.
T Consensus 226 ~~~~--~~KPVv~~k~G~~~~~g~~~sHtgal~~~~~g~~~~~~aa~~~aGv~~~--~~~~el~~~~~ 289 (294)
T 2yv1_A 226 FIEK--MKKPVIGYIAGQSAPEGKRMGHAGAIVEKGKGTAESKMKALEEAGAYVA--KNISDIPKLLA 289 (294)
T ss_dssp HHTT--CSSCEEEEEECC-------------------CCHHHHHHHHHHHTCEEC--SSTTHHHHHHH
T ss_pred HHHh--CCCCEEEEEecCCCCccccCCchhhhccCCCCCHHHHHHHHHHCCCeEe--CCHHHHHHHHH
Confidence 3333 57999987555321 112346667777665 55555444443
No 74
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=97.41 E-value=0.00077 Score=67.41 Aligned_cols=120 Identities=14% Similarity=0.236 Sum_probs=85.7
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHH
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEE-SIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVN 379 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~-~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~ 379 (525)
.|+||+||-||+.+....|.+...|+-..-.+-+++++..+ .+.++++.+.+||++++|++..-+. .+.+..++.+.+
T Consensus 144 ~G~i~~vsqSG~l~~~~~~~~~~~g~G~s~~vs~G~~~~~~~~~~d~l~~l~~D~~t~~I~l~~E~~-~~~~~~~~~~~~ 222 (288)
T 2nu8_A 144 PGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIG-GSAEEEAAAYIK 222 (288)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTCCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESS-SSHHHHHHHHHH
T ss_pred CCCEEEEECcHHHHHHHHHHHHhcCCCEEEEEeeCCCcCCCCCHHHHHHHHhcCCCCCEEEEEEeeC-CCHHHHHHHHHH
Confidence 47899999999999999999999999877778788876422 4889999999999999988754332 233444444444
Q ss_pred HHHhcCCCCcEEEEeCCcc--------------------hHHHHHHHhhCCCCccccCCHHHHHHHHH
Q psy7785 380 ACKSFKLSIPLVVRLEGTN--------------------VQEGKRILDESKLPLIFASDLDEAASLVN 427 (525)
Q Consensus 380 a~~~~~~~kPivv~~~g~~--------------------~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~ 427 (525)
+ . .+|||++...|.. .......|+++|+... +++++-...+.
T Consensus 223 ~--~--~~KPVv~~k~G~~~~~g~~~~Htga~~~~~~g~~~~~~aa~~~aGv~~~--~~~~el~~~~~ 284 (288)
T 2nu8_A 223 E--H--VTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTV--RSLADIGEALK 284 (288)
T ss_dssp H--H--CCSCEEEEEECTTCCTTCCCSSTTCCCCTTCCCHHHHHHHHHHTTCEEC--SSGGGHHHHHH
T ss_pred h--c--CCCCEEEEEeCCCCcccccccchhhhhccCCccHHHHHHHHHHCCCeEe--CCHHHHHHHHH
Confidence 4 2 5799998654421 1112447788888776 66666555443
No 75
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=97.24 E-value=0.0012 Score=69.56 Aligned_cols=121 Identities=19% Similarity=0.167 Sum_probs=73.2
Q ss_pred HHHHHhcCCCccEEEEEec-ccc---cC------hHHHHHHHHHHHHhcCCCCcEEEEeCCcc--hHHHHHHHhhCCCCc
Q psy7785 346 AFRIISSDSNVKCILVNVF-GGI---VN------CATIAKGLVNACKSFKLSIPLVVRLEGTN--VQEGKRILDESKLPL 413 (525)
Q Consensus 346 al~~ll~dp~vd~vlv~~~-~~~---~~------~~~ia~~i~~a~~~~~~~kPivv~~~g~~--~~~~~~~L~~~Gvpv 413 (525)
....+.++++++.+++.-. .+. .. .....+.+.+.+++ .+..+++. .... .....+.|++.|+|+
T Consensus 18 la~~l~~s~~v~~v~~~pgn~g~~~~~~~~~~~~~~~d~~~l~~~a~~--~~id~vv~-g~e~~l~~~~~~~l~~~Gi~~ 94 (431)
T 3mjf_A 18 LGWKAAQSPLADKIYVAPGNAGTALEPTLENVDIAATDIAGLLAFAQS--HDIGLTIV-GPEAPLVIGVVDAFRAAGLAI 94 (431)
T ss_dssp HHHHHTTCTTEEEEEEEECCHHHHHCTTCEECCCCTTCHHHHHHHHHH--TTEEEEEE-CSHHHHHTTHHHHHHHTTCCE
T ss_pred HHHHHHhCCCCCEEEEECCCHHHhhhcccceecCCcCCHHHHHHHHHH--hCcCEEEE-CCchHHHHHHHHHHHhcCCCe
Confidence 3445666777776665311 000 00 01123566676666 33334432 2211 123456888999999
Q ss_pred cccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEE
Q psy7785 414 IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRL 490 (525)
Q Consensus 414 f~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi 490 (525)
| ....+++.... +-...+++|+++|||+ ..+++.+++.+ .++++ |||+|+|-
T Consensus 95 ~--Gp~~~a~~~~~------------------dK~~~k~~l~~~GIptp~~~~~~~~~ea~~---~~~~~--g~PvVvKp 149 (431)
T 3mjf_A 95 F--GPTQAAAQLEG------------------SKAFTKDFLARHNIPSAEYQNFTDVEAALA---YVRQK--GAPIVIKA 149 (431)
T ss_dssp E--SCCHHHHHHHH------------------CHHHHHHHHHHTTCSBCCEEEESCHHHHHH---HHHHH--CSSEEEEE
T ss_pred e--CCCHHHHHHhh------------------CHHHHHHHHHHcCCCCCCeEeeCCHHHHHH---HHHHc--CCeEEEEE
Confidence 8 44444433321 2346899999999999 78899999887 45564 99999998
Q ss_pred ecCC
Q psy7785 491 EGTN 494 (525)
Q Consensus 491 ~~~~ 494 (525)
.+..
T Consensus 150 ~~~~ 153 (431)
T 3mjf_A 150 DGLA 153 (431)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 7654
No 76
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp, lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Probab=97.12 E-value=0.0011 Score=75.04 Aligned_cols=123 Identities=18% Similarity=0.210 Sum_probs=86.4
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH-HHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHH
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEE-SIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVN 379 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~-~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~ 379 (525)
.|+||+||-||+++....|.+...|+-..-.+-+++++..+ .+.++++.+.+||++++|++..-.+.......|+
T Consensus 654 ~G~VgiVSqSGal~~~i~~~~~~~g~G~S~~VsiGnd~~~d~~~~D~L~~l~~Dp~T~~Ivly~Ei~g~~f~~aA~---- 729 (829)
T 3pff_A 654 PGSVAYVSRSGGMSNELNNIISRTTDGVYEGVAIGGDRYPGSTFMDHVLRYQDTPGVKMIVVLGEIGGTEEYKICR---- 729 (829)
T ss_dssp CCSEEEEESCHHHHHHHHHHHHHHSSCEEEEEECCSSSSCSSCHHHHHHHHHTCTTCCEEEEEEESSSSHHHHHHH----
T ss_pred CCcEEEEechhHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCCHHHHHHHHhhCCCCCEEEEEEecCchHHHHHHH----
Confidence 57999999999999999999999999777788888874322 4889999999999999999764322222223333
Q ss_pred HHHhcCCCCcEEEEeCCcchH-----------------------HHHHHHhhCCCCccccCCHHHHHHHHHHh
Q psy7785 380 ACKSFKLSIPLVVRLEGTNVQ-----------------------EGKRILDESKLPLIFASDLDEAASLVNAC 429 (525)
Q Consensus 380 a~~~~~~~kPivv~~~g~~~~-----------------------~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l 429 (525)
.+++...+|||++...|.... .-...|+++|+.+. +++++-...+.+.
T Consensus 730 ~~~~~~~~KPVVa~kaGrsa~~~~~~~~~sHtGAlag~~~~ta~~~~aa~r~aGvi~v--~~~~el~~~~~~~ 800 (829)
T 3pff_A 730 GIKEGRLTKPIVCWCIGTCATMFSSEVQFGHAGACANQASETAVAKNQALKEAGVFVP--RSFDELGEIIQSV 800 (829)
T ss_dssp HHHTTSCCSCEEEEEECSSTTC---------------CGGGSHHHHHHHHHHTTCBCC--SSGGGHHHHHHHH
T ss_pred HHHhccCCCCEEEEEecCcCcccccccccccccccccCCcccHHHHHHHHHHcCCeEc--CCHHHHHHHHHHH
Confidence 233112679999875552111 23457899999887 6666655555443
No 77
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B* 2fpp_B* 1euc_B* 1eud_B*
Probab=97.11 E-value=0.00071 Score=70.71 Aligned_cols=42 Identities=17% Similarity=0.351 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCC-cEEEEEe
Q psy7785 445 TNVQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSI-PLVVRLE 491 (525)
Q Consensus 445 ~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~-PVVlKi~ 491 (525)
++|+++|++|++||||+ .++.|.+||.+ +++++ || |||+|.+
T Consensus 3 l~E~~aK~lL~~~GIpvp~~~~~~s~~ea~~---~a~~l--g~~PvVvK~~ 48 (395)
T 2fp4_B 3 LQEYQSKKLMSDNGVKVQRFFVADTANEALE---AAKRL--NAKEIVLKAQ 48 (395)
T ss_dssp CCHHHHHHHHHHTTCCCCCEEEESSHHHHHH---HHHHH--TCSSEEEEEC
T ss_pred CCHHHHHHHHHHCCcCCCCeEEECCHHHHHH---HHHHc--CCCcEEEEEe
Confidence 46899999999999999 89999999998 56675 99 8999994
No 78
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4 PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B* 2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Probab=97.02 E-value=0.00092 Score=69.71 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCc-EEEEEec
Q psy7785 445 TNVQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIP-LVVRLEG 492 (525)
Q Consensus 445 ~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~P-VVlKi~~ 492 (525)
++|+++|++|++||||+ .++.|.+||.+ +++++ ||| ||+|.+.
T Consensus 3 l~E~~aK~lL~~~GIpvp~~~~~~s~eea~~---aa~~l--G~P~vVvK~~~ 49 (388)
T 2nu8_B 3 LHEYQAKQLFARYGLPAPVGYACTTPREAEE---AASKI--GAGPWVVKCQV 49 (388)
T ss_dssp CCHHHHHHHHHHTTCCCCCEEEESSHHHHHH---HHHHH--CSSCEEEEECC
T ss_pred CCHHHHHHHHHHCCcCCCCeeEECCHHHHHH---HHHHh--CCCeEEEEEec
Confidence 46899999999999999 88999999988 56675 999 9999976
No 79
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=97.01 E-value=0.0017 Score=65.02 Aligned_cols=82 Identities=16% Similarity=0.250 Sum_probs=56.8
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||+|++ ++++++ ++| |+|||+....+| + ||.+..+.+++.++++++.....
T Consensus 110 ~~gip~p~~--~~~~~~-------l~~-P~vvKP~~g~~s--~---------Gv~~v~~~~el~~~~~~~~~~~~----- 163 (334)
T 2r85_A 110 KAGIRVPEV--YEDPDD-------IEK-PVIVKPHGAKGG--K---------GYFLAKDPEDFWRKAEKFLGIKR----- 163 (334)
T ss_dssp HTTCCCCCB--CSCGGG-------CCS-CEEEEECC------T---------TCEEESSHHHHHHHHHHHHCCCS-----
T ss_pred HcCCCCCCc--cCChHH-------cCC-CEEEEeCCCCCC--C---------CEEEECCHHHHHHHHHHHHhhcc-----
Confidence 799999998 566653 576 999999755443 3 78888899999988888754210
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcCCC
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDRLH 130 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f 130 (525)
.+ ....++|||+++ +.|+.+.+..++..
T Consensus 164 --~~-~~~~~lvee~i~-G~e~~~~~~~~~~~ 191 (334)
T 2r85_A 164 --KE-DLKNIQIQEYVL-GVPVYPHYFYSKVR 191 (334)
T ss_dssp --GG-GCCSEEEEECCC-CEEEEEEEEEETTT
T ss_pred --cC-CCCcEEEEeccC-CceeEEEEeecCcC
Confidence 00 125699999998 67887766666543
No 80
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=96.93 E-value=0.0058 Score=64.60 Aligned_cols=92 Identities=22% Similarity=0.232 Sum_probs=60.3
Q ss_pred HHHHHHHHhcCCCCcEEEEeCCcchH--HHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHH
Q psy7785 375 KGLVNACKSFKLSIPLVVRLEGTNVQ--EGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKR 452 (525)
Q Consensus 375 ~~i~~a~~~~~~~kPivv~~~g~~~~--~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~ 452 (525)
+.+.+.+++ .+..+++. ...... ...+.|++.|+|+| ....+++.... +-...++
T Consensus 73 ~~l~~~a~~--~~id~vv~-g~E~~l~~~~~~~l~~~Gi~~~--Gp~~~a~~~~~------------------dK~~~k~ 129 (442)
T 3lp8_A 73 IEVIQVCKK--EKIELVVI-GPETPLMNGLSDALTEEGILVF--GPSKAAARLES------------------SKGFTKE 129 (442)
T ss_dssp HHHHHHHHH--TTCCEEEE-CSHHHHHTTHHHHHHHTTCEEE--SCCHHHHHHHH------------------CHHHHHH
T ss_pred HHHHHHHHH--hCCCEEEE-CCcHHHHHHHHHHHHhcCCcEe--cCCHHHHHHhh------------------CHHHHHH
Confidence 566666665 33334443 222111 23567888999998 44444433321 2346899
Q ss_pred HHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785 453 ILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN 494 (525)
Q Consensus 453 LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~ 494 (525)
+|+++|||+ ..+++.+++.+ .++++ |||+|+|-.+..
T Consensus 130 ~l~~~GIp~p~~~~~~~~~ea~~---~~~~~--g~PvVvKp~~~~ 169 (442)
T 3lp8_A 130 LCMRYGIPTAKYGYFVDTNSAYK---FIDKH--KLPLVVKADGLA 169 (442)
T ss_dssp HHHHHTCCBCCEEEESSHHHHHH---HHHHS--CSSEEEEESSCC
T ss_pred HHHHCCCCCCCEEEECCHHHHHH---HHHHc--CCcEEEeECCCC
Confidence 999999999 78899999887 45564 999999986544
No 81
>1wr2_A Hypothetical protein PH1789; structural genomics, NPPSFA, national on protein structural and functional analyses; 2.00A {Pyrococcus horikoshii}
Probab=96.85 E-value=0.0011 Score=64.08 Aligned_cols=44 Identities=32% Similarity=0.446 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecC
Q psy7785 445 TNVQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGT 493 (525)
Q Consensus 445 ~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~ 493 (525)
+++.++|++|++||||+ .++.+.+|+.+ +++++ |||||+|.++.
T Consensus 20 l~k~~~k~ll~~~GIp~p~~~~~~~~~ea~~---~a~~l--g~PvvvKp~~~ 66 (238)
T 1wr2_A 20 MVEYEAKQVLKAYGLPVPEEKLAKTLDEALE---YAKEI--GYPVVLKLMSP 66 (238)
T ss_dssp ECHHHHHHHHHTTTCCCCCCEEESSHHHHHH---HHHHH--CSSEEEEEECT
T ss_pred CCHHHHHHHHHHcCcCCCCeEEeCCHHHHHH---HHHHh--CCCEEEEEccC
Confidence 46889999999999999 88999999887 46675 99999999886
No 82
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=96.64 E-value=0.0026 Score=67.13 Aligned_cols=157 Identities=12% Similarity=0.119 Sum_probs=88.9
Q ss_pred CcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHH
Q psy7785 302 GNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNAC 381 (525)
Q Consensus 302 ~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~ 381 (525)
.+|.| .++|..+...+-++.+.|.++- -+|...+.... ..+ .. |-.+..-+..........+.|.+++
T Consensus 7 ~kiLI-~g~g~~a~~i~~aa~~~G~~~v-~v~~~~~~~~~----~~~--~a----d~~~~i~~~~~~~~~~d~~~l~~~~ 74 (446)
T 3ouz_A 7 KSILI-ANRGEIALRALRTIKEMGKKAI-CVYSEADKDAL----YLK--YA----DASICIGKARSSESYLNIPAIIAAA 74 (446)
T ss_dssp CEEEE-CCCHHHHHHHHHHHHHTTCEEE-EEEEGGGTTCT----HHH--HS----SEEEEEECCTTTTGGGCHHHHHHHH
T ss_pred ceEEE-ECCCHHHHHHHHHHHHcCCEEE-EEEcCcccccc----hHh--hC----CEEEEcCCCCccccccCHHHHHHHH
Confidence 46666 6788899999999999998631 01111111111 111 12 2222211111111111124566665
Q ss_pred HhcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCC
Q psy7785 382 KSFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKL 459 (525)
Q Consensus 382 ~~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGI 459 (525)
++. +...++...|. ......+.+.+.|+|++ ....+++..+. +-...+++|+++||
T Consensus 75 ~~~--~~d~i~p~~g~~~e~~~~~~~~~~~g~~~~--g~~~~~~~~~~------------------dK~~~~~~l~~~Gi 132 (446)
T 3ouz_A 75 EIA--EADAIFPGYGFLSENQNFVEICAKHNIKFI--GPSVEAMNLMS------------------DKSKAKQVMQRAGV 132 (446)
T ss_dssp HHH--TCSEEECCSSTTTTCHHHHHHHHHTTCEES--SCCHHHHHHHH------------------SHHHHHHHHHHTTC
T ss_pred HHh--CcCEEEECCcccccCHHHHHHHHHCCCceE--CcCHHHHHHhC------------------CHHHHHHHHHHcCC
Confidence 552 33344322232 22445677888999987 44444454432 23468999999999
Q ss_pred Ce--E---EEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHH
Q psy7785 460 PL--I---FASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQE 497 (525)
Q Consensus 460 pv--~---lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~ 497 (525)
|+ . .+.+.+++.+ .++++ |||||+|-....-.+
T Consensus 133 p~p~~~~~~~~~~~e~~~---~~~~~--g~PvvvKp~~g~gg~ 170 (446)
T 3ouz_A 133 PVIPGSDGALAGAEAAKK---LAKEI--GYPVILKAAAGGGGR 170 (446)
T ss_dssp CBCSBCSSSCCSHHHHHH---HHHHH--CSSEEEEETTCCTTC
T ss_pred CcCCCcccCCCCHHHHHH---HHHHh--CCCEEEEECCCCCCC
Confidence 99 3 6789999887 45664 999999987655333
No 83
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=96.63 E-value=0.0043 Score=62.13 Aligned_cols=79 Identities=6% Similarity=0.136 Sum_probs=57.9
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhc--CCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccc
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDL--NFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITK 96 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~l--g~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~ 96 (525)
+.|||+|++.++++.+++.+++++. +| |+|+|+..-.+|.+ .-||.+..+.+++. . .
T Consensus 108 ~~gi~~P~~~~~~~~~~~~~~~~~~~~~~-P~vvKP~~g~g~~~--------s~gv~~v~~~~~l~--------~-~--- 166 (324)
T 1z2n_X 108 KNNIPIPNSFSVKSKEEVIQLLQSKQLIL-PFIVKPENAQGTFN--------AHQMKIVLEQEGID--------D-I--- 166 (324)
T ss_dssp HTTCCCSCEEEESSHHHHHHHHHTTCSCS-SEEEEESBCSSSSG--------GGEEEEECSGGGGT--------T-C---
T ss_pred HCCCCCCCEEEeCCHHHHHHHHHHcCCCC-CEEEeeCCCCCCcc--------ceeeEEEeCHHHHh--------h-c---
Confidence 7999999999999999998888874 46 99999965333211 24787877766532 0 1
Q ss_pred cCCCCCcccCeEEEEeeeCC-ceeEEEEEEE
Q psy7785 97 QTPKTGINVNKVMVAKSVNI-TRETYFCIVQ 126 (525)
Q Consensus 97 ~~~~~g~~~~~vlVee~~~~-~~E~~vgv~~ 126 (525)
-..++||+++++ +.|+.+.+..
T Consensus 167 --------~~~~lvqe~i~~~g~~~~v~v~g 189 (324)
T 1z2n_X 167 --------HFPCLCQHYINHNNKIVKVFCIG 189 (324)
T ss_dssp --------CSSEEEEECCCCTTCEEEEEEET
T ss_pred --------CCCEEEEEccCCCCcEEEEEEEC
Confidence 135899999985 6888887763
No 84
>3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A 2yl2_A
Probab=96.53 E-value=0.0029 Score=68.75 Aligned_cols=169 Identities=18% Similarity=0.155 Sum_probs=91.9
Q ss_pred CcEEEEecchhHHHHHHHHHHHcCCCC-CC--eeeecCCCC-HHHHHHHHHHHhcCCCccEEEEEeccc-ccChHHHHHH
Q psy7785 302 GNIGCLVNGAGLAMATMDIIKLHGGEP-AN--FLDVGGGVN-EESIIQAFRIISSDSNVKCILVNVFGG-IVNCATIAKG 376 (525)
Q Consensus 302 ~rIaIitnsGG~gvlaaD~~~~~Gl~~-aN--PlDl~g~a~-~~~~~~al~~ll~dp~vd~vlv~~~~~-~~~~~~ia~~ 376 (525)
.+|. |.|+|-.++-..-+|.+.|.+. +| -+....-.+ .+....+...-+.|. .+ .+.++ ........+.
T Consensus 41 ~kvL-ianrGeia~riira~r~lg~e~~~~e~gi~~Vav~s~~D~~~~a~~~~~ADe---~~--~i~~~~~~~sy~d~~~ 114 (540)
T 3glk_A 41 EKVL-IANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADH---YV--PVPGGPNNNNYANVEL 114 (540)
T ss_dssp CEEE-ECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSE---EE--ECCCSSGGGTTTCHHH
T ss_pred cEEE-EECChHHHHHHHHHHHHhccccccccCCcEEEEEEcCcccCcCChhHHhCCE---EE--EeCCCCcccccccHHH
Confidence 3554 5678889999999998875211 00 011111111 122333344334453 12 22221 1111122356
Q ss_pred HHHHHHhcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHH
Q psy7785 377 LVNACKSFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRIL 454 (525)
Q Consensus 377 i~~a~~~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL 454 (525)
|++++++ .+...+....|. ......+.+++.|+|++ ....+++..+. +-..+|++|
T Consensus 115 ii~~a~~--~~~daI~pg~gflsE~~~~a~~le~~Gi~~i--Gp~~~ai~~~~------------------DK~~~k~ll 172 (540)
T 3glk_A 115 IVDIAKR--IPVQAVWAGWGHASENPKLPELLCKNGVAFL--GPPSEAMWALG------------------DKIASTVVA 172 (540)
T ss_dssp HHHHHHH--TTCSEEECCSSGGGGCTHHHHHHHHTTCEES--SCCHHHHC---------------------CHHHHHHHH
T ss_pred HHHHHHH--hCCCEEEeCCCccccCHHHHHHHHHcCCcee--CCCHHHHHHhC------------------CHHHHHHHH
Confidence 7777776 344444322332 22334567889999987 55555554432 345799999
Q ss_pred HHCCCCe---EE-----------------------------EcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhh
Q psy7785 455 DESKLPL---IF-----------------------------ASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRIL 502 (525)
Q Consensus 455 ~ayGIpv---~l-----------------------------A~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~ 502 (525)
+++|||+ .. +.+.+++.+ .++++ |||||+|-....-.+|-+++
T Consensus 173 ~~~GVPvp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~~ea~~---~a~~i--gyPvVVKp~~ggGG~Gv~iv 247 (540)
T 3glk_A 173 QTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLE---AAERI--GFPLMIKASEGGGGKGIRKA 247 (540)
T ss_dssp HHTTCCBCCBTTTTCCCCCCCTTC----CCCCCHHHHHHTSCCSHHHHHH---HHHHH--CSSEEEEETTCC----EEEE
T ss_pred HHcCCCCCCcccccccccccccccccccccccccccccccCcCCHHHHHH---HHHhc--CCcEEEEECCCCCCCCEEEE
Confidence 9999999 23 677888877 46674 99999999887765555444
Q ss_pred h
Q psy7785 503 D 503 (525)
Q Consensus 503 ~ 503 (525)
+
T Consensus 248 ~ 248 (540)
T 3glk_A 248 E 248 (540)
T ss_dssp C
T ss_pred C
Confidence 3
No 85
>3jrx_A Acetyl-COA carboxylase 2; BC domain, soraphen A, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis; HET: S1A; 2.50A {Homo sapiens} PDB: 3jrw_A*
Probab=96.44 E-value=0.0035 Score=68.70 Aligned_cols=165 Identities=19% Similarity=0.163 Sum_probs=92.9
Q ss_pred cEEEEecchhHHHHHHHHHHHcCCCC-CC--eeeecCCCC-HHHHHHHHHHHhcCCCccEEEEEecccc-cChHHHHHHH
Q psy7785 303 NIGCLVNGAGLAMATMDIIKLHGGEP-AN--FLDVGGGVN-EESIIQAFRIISSDSNVKCILVNVFGGI-VNCATIAKGL 377 (525)
Q Consensus 303 rIaIitnsGG~gvlaaD~~~~~Gl~~-aN--PlDl~g~a~-~~~~~~al~~ll~dp~vd~vlv~~~~~~-~~~~~ia~~i 377 (525)
+|. |.|.|-.++-..-+|.+.|.+. +| =+....-.+ .+....+...-+.|. . +.+.++. .......+.|
T Consensus 58 kvL-IanrGeiA~riira~r~lG~e~f~~e~Gi~tVav~s~~D~~~~a~~~~~ADe----~-v~i~~~~~~~syld~~~I 131 (587)
T 3jrx_A 58 KVL-IANNGIAAVKCMRSIRRWAYEMFRNERAIRFVVMVTPEDLKANAEYIKMADH----Y-VPVPGGPNNNNYANVELI 131 (587)
T ss_dssp EEE-ECCCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTCHHHHHSSE----E-EECCCSSGGGTTTCHHHH
T ss_pred EEE-EECChHHHHHHHHHHHHhhhccccccCCceEEEEecccccCcCChhhHhCCE----E-EEeCCCCccccccCHHHH
Confidence 454 5688889999999998775221 00 011111111 122333333334442 1 2222221 1111223567
Q ss_pred HHHHHhcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHH
Q psy7785 378 VNACKSFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILD 455 (525)
Q Consensus 378 ~~a~~~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ 455 (525)
++++++ .+...+....|. ......+.+++.|+|++ ....+++..+. +-..++++|+
T Consensus 132 l~~a~~--~~vdaV~pG~GflsEn~~~a~~le~~Gi~~i--Gp~~~ai~~~~------------------DK~~ak~ll~ 189 (587)
T 3jrx_A 132 VDIAKR--IPVQAVWAGWGHASENPKLPELLCKNGVAFL--GPPSEAMWALG------------------DKIASTVVAQ 189 (587)
T ss_dssp HHHHHH--TTCSEEECCSSTTTTCTHHHHHHHTTTCEES--SCCHHHHHHHC------------------SHHHHHHHHH
T ss_pred HHHHHH--hCCCEEEeCCCccccCHHHHHHHHHCCCCee--CCCHHHHHHhC------------------CHHHHHHHHH
Confidence 777776 344333222232 22334578889999988 55556665542 2457899999
Q ss_pred HCCCCe---EE-----------------------------EcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHH
Q psy7785 456 ESKLPL---IF-----------------------------ASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKR 500 (525)
Q Consensus 456 ayGIpv---~l-----------------------------A~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~ 500 (525)
++|||+ .. +.+.+++.+ .++++ |||||+|-....-.+|.+
T Consensus 190 ~aGVPvpp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~s~eea~~---~a~~i--GyPvVVKp~~GgGGkGv~ 261 (587)
T 3jrx_A 190 TLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPEDVYDKGCVKDVDEGLE---AAERI--GFPLMIKASEGGGGKGIR 261 (587)
T ss_dssp HTTCCBCCBTTTTCCCCC------CCCCCCCCHHHHHTTSCCSHHHHHH---HHHHH--CSSEEEEETTCCSSSSEE
T ss_pred HcCCCCCCeecccccccccccccccccccccchhhccccccCCHHHHHH---HHHhc--CCeEEEEeCCCCCCCCeE
Confidence 999999 22 667888877 46674 999999997766444433
No 86
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=96.42 E-value=0.0087 Score=59.09 Aligned_cols=82 Identities=12% Similarity=0.180 Sum_probs=61.1
Q ss_pred CCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeC-CcccHHHHHHHHhccccccccCCCC
Q psy7785 23 HSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTN-NVQDIPPILEKMIGHKLITKQTPKT 101 (525)
Q Consensus 23 pvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~-~~eea~~a~~~l~~~~~~~~~~~~~ 101 (525)
|+|++.++++.+++.++++++| |+|+|+..-.+| + ||.+.. +.+++.++++.+...
T Consensus 134 ~~P~t~~~~~~~~~~~~~~~~~--p~vvKP~~g~~g--~---------Gv~~v~~~~~~l~~~~~~~~~~---------- 190 (316)
T 1gsa_A 134 LTPETLVTRNKAQLKAFWEKHS--DIILKPLDGMGG--A---------SIFRVKEGDPNLGVIAETLTEH---------- 190 (316)
T ss_dssp TSCCEEEESCHHHHHHHHHHHS--SEEEECSSCCTT--T---------TCEEECTTCTTHHHHHHHHTTT----------
T ss_pred cCCCeEEeCCHHHHHHHHHHcC--CEEEEECCCCCc--c---------cEEEecCChHHHHHHHHHHHhc----------
Confidence 9999999999999999888886 899999654332 3 677776 788888776664211
Q ss_pred CcccCeEEEEeeeCC--ceeEEEEEEEcCCC
Q psy7785 102 GINVNKVMVAKSVNI--TRETYFCIVQDRLH 130 (525)
Q Consensus 102 g~~~~~vlVee~~~~--~~E~~vgv~~D~~f 130 (525)
+ ...++||+++++ +.|+.+.+. +...
T Consensus 191 ~--~~~~lvqe~i~~~~~~~~~v~~~-~g~~ 218 (316)
T 1gsa_A 191 G--TRYCMAQNYLPAIKDGDKRVLVV-DGEP 218 (316)
T ss_dssp T--TSCEEEEECCGGGGGCEEEEEEE-TTEE
T ss_pred C--CceEEEecccCCCCCCCEEEEEE-CCEE
Confidence 1 146999999986 688888775 4444
No 87
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=96.23 E-value=0.019 Score=61.33 Aligned_cols=101 Identities=8% Similarity=0.113 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHhcCCCCcEEEEeCCc-chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHH
Q psy7785 370 CATIAKGLVNACKSFKLSIPLVVRLEGT-NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQ 448 (525)
Q Consensus 370 ~~~ia~~i~~a~~~~~~~kPivv~~~g~-~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~ 448 (525)
.....+.|.+++++ .+...++. ... ......+.+++.|+| . .+++. +..+ .+-.
T Consensus 87 ~~~~i~~I~~~a~~--~~id~Vip-~sE~~l~~~a~~~e~~Gi~-g--~~~~a-i~~~------------------~DK~ 141 (474)
T 3vmm_A 87 EEEVVEQIVKVAEM--FGADAITT-NNELFIAPMAKACERLGLR-G--AGVQA-AENA------------------RDKN 141 (474)
T ss_dssp HHHHHHHHHHHHHH--TTCSEEEE-SCGGGHHHHHHHHHHTTCC-C--SCHHH-HHHT------------------TCHH
T ss_pred hHHHHHHHHHHHHH--cCCCEEEE-CCcccHHHHHHHHHHcCCC-C--CCHHH-HHHh------------------hCHH
Confidence 34566788887776 34444443 222 224456677888998 5 55442 2211 2345
Q ss_pred HHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHH
Q psy7785 449 EGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKR 500 (525)
Q Consensus 449 eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~ 500 (525)
..+++|+++|||+ ..+.+.+++.+ .++++ |||||+|-....-..|-.
T Consensus 142 ~~k~~l~~~GIpvp~~~~v~s~ee~~~---~~~~l--g~PvVVKP~~g~gg~Gv~ 191 (474)
T 3vmm_A 142 KMRDAFNKAGVKSIKNKRVTTLEDFRA---ALEEI--GTPLILKPTYLASSIGVT 191 (474)
T ss_dssp HHHHHHHHTTSCCCCEEEECSHHHHHH---HHHHS--CSSEEEEESSCCTTTTCE
T ss_pred HHHHHHHHcCCCCCCeEEECCHHHHHH---HHHHc--CCCEEEEECCCCcCceEE
Confidence 7899999999999 78899999887 46674 999999987765444433
No 88
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=96.20 E-value=0.0064 Score=72.05 Aligned_cols=164 Identities=15% Similarity=0.165 Sum_probs=67.2
Q ss_pred CcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHH
Q psy7785 302 GNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNAC 381 (525)
Q Consensus 302 ~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~ 381 (525)
++|. |.|+|-.+...+-+|.+.|.++ +=+..+. +......+ ..| -.+..-...........+.|++++
T Consensus 32 kkIL-I~grGeia~~iiraar~lGi~v---VaV~s~~--d~~a~~~~--~AD----e~~~i~p~~~~~syld~~~Il~~a 99 (1236)
T 3va7_A 32 ETVL-IANRGEIAVRIMKTLKRMGIKS---VAVYSDP--DKYSQHVT--DAD----FSVALHGRTAAETYLDIDKIINAA 99 (1236)
T ss_dssp SEEE-ECCCHHHHHHHHHHHHHHTCEE---EEEECSG--GGGCHHHH--HSS----EEEECCCSSTTTTTTCHHHHHHHH
T ss_pred CEEE-EEcCCHHHHHHHHHHHHCCCEE---EEEEcCC--CcCchhhh--hCC----EEEEeCCCcccccccCHHHHHHHH
Confidence 3555 4678899999999999999862 1111111 11111111 222 222211111111111234666666
Q ss_pred HhcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCC
Q psy7785 382 KSFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKL 459 (525)
Q Consensus 382 ~~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGI 459 (525)
++ .+...++...|. +.....+.+++.|+|++ ....+++..+.. -..++++|+++||
T Consensus 100 ~~--~~iDaI~pg~g~lsEn~~~a~~le~~Gi~~i--Gps~eai~~~~D------------------K~~ak~ll~~aGI 157 (1236)
T 3va7_A 100 KK--TGAQAIIPGYGFLSENADFSDRCSQENIVFV--GPSGDAIRKLGL------------------KHSAREIAERAKV 157 (1236)
T ss_dssp HH--TTCSEEECCSSGGGGCHHHHHHHHTTTCEES--SCCHHHHHHHHS------------------TTHHHHHHHHTTC
T ss_pred HH--hCCCEEEECCccccccHHHHHHHHHCCCCee--CCCHHHHHHhcC------------------HHHHHHHHHHcCC
Confidence 66 333344332232 12334577888999987 555555555432 1268999999999
Q ss_pred Ce----EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhhh
Q psy7785 460 PL----IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDE 504 (525)
Q Consensus 460 pv----~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~ 504 (525)
|+ .++.+.+++.+ .++++ |||||+|-.+..-.+|-+++..
T Consensus 158 Pvpp~~~~v~s~eea~~---~a~~i--GyPvVVKP~~GgGGkGV~iv~s 201 (1236)
T 3va7_A 158 PLVPGSGLIKDAKEAKE---VAKKL--EYPVMVKSTAGGGGIGLQKVDS 201 (1236)
T ss_dssp CCCC---------------------------------------------
T ss_pred CCCCeeEecCCHHHHHH---HHHHc--CCCEEEEeCCCCCCCCEEEECC
Confidence 98 46788888887 46674 9999999988776666665543
No 89
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=96.09 E-value=0.0055 Score=68.38 Aligned_cols=161 Identities=14% Similarity=0.206 Sum_probs=89.3
Q ss_pred CcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc-cChHHHHHHHHHH
Q psy7785 302 GNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI-VNCATIAKGLVNA 380 (525)
Q Consensus 302 ~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~-~~~~~ia~~i~~a 380 (525)
.+|. |.|+|-.+...+-+|.+.|...- =+..+.+.. +...-+.| -.+ .+.+.. .......+.|+++
T Consensus 29 ~kIL-I~g~Geia~~iiraar~lGi~~v---av~s~~d~~----a~~~~~AD----~~~-~i~~~~~~~syld~~~i~~~ 95 (675)
T 3u9t_A 29 QRLL-VANRGEIACRVMRSARALGIGSV---AVHSDIDRH----ARHVAEAD----IAV-DLGGAKPADSYLRGDRIIAA 95 (675)
T ss_dssp SEEE-ECCCHHHHHHHHHHHHHHTCEEE---EEECSGGGG----CHHHHTCS----EEE-ECCCSSGGGTTTCHHHHHHH
T ss_pred CEEE-EECCCHHHHHHHHHHHHCCCEEE---EEECCCCCC----chhHhhCC----EEE-EcCCCccccCccCHHHHHHH
Confidence 3555 46788899999999999998631 011111111 11111222 222 122111 1111123466677
Q ss_pred HHhcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCC
Q psy7785 381 CKSFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESK 458 (525)
Q Consensus 381 ~~~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayG 458 (525)
+++ .+...+....|. ......+.+.+.|++++ ..+.+++..+. +-..++++|+++|
T Consensus 96 a~~--~~~daI~pg~gflsE~~~~a~~le~~Gi~~i--Gp~~~ai~~~~------------------DK~~~k~~l~~~G 153 (675)
T 3u9t_A 96 ALA--SGAQAIHPGYGFLSENADFARACEEAGLLFL--GPPAAAIDAMG------------------SKSAAKALMEEAG 153 (675)
T ss_dssp HHH--TTCSEEECCSSTTTTCHHHHHHHHTTTCEES--SCCHHHHHHHT------------------SHHHHHHHHHHTT
T ss_pred HHH--hCcCEEEeCCcccccCHHHHHHHHHcCCcee--CCCHHHHHHhc------------------hHHHHHHHHHHcC
Confidence 666 333334322232 22445678888999987 55555555442 2346899999999
Q ss_pred CCe---EE--EcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhh
Q psy7785 459 LPL---IF--ASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRIL 502 (525)
Q Consensus 459 Ipv---~l--A~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~ 502 (525)
||+ .. +.+.+++.+ .++++ |||||+|-....-.+|-+++
T Consensus 154 Vpvpp~~~~~~~s~~e~~~---~a~~i--gyPvvvKp~~G~Gg~Gv~iv 197 (675)
T 3u9t_A 154 VPLVPGYHGEAQDLETFRR---EAGRI--GYPVLLKAAAGGGGKGMKVV 197 (675)
T ss_dssp CCBCCCCCSCCCCTTHHHH---HHHHS--CSSBCCBCCC------CCCB
T ss_pred cCcCCccccCCCCHHHHHH---HHHhC--CCcEEEEECCCCCCccEEEE
Confidence 999 22 678888887 46674 99999999877655554443
No 90
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=96.08 E-value=0.007 Score=67.59 Aligned_cols=159 Identities=13% Similarity=0.125 Sum_probs=65.4
Q ss_pred EecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc-ccChHHHHHHHHHHHHhcC
Q psy7785 307 LVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG-IVNCATIAKGLVNACKSFK 385 (525)
Q Consensus 307 itnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~-~~~~~~ia~~i~~a~~~~~ 385 (525)
|.|+|-.+...+.+|.+.|.+.-= ++-..+...... -+.|.. +. +.+. ........+.|++++++.
T Consensus 7 IanrGeia~riiraar~lGi~~va-v~sd~d~~a~~~------~~aD~~---~~--i~p~~~~~syld~~~i~~~a~~~- 73 (681)
T 3n6r_A 7 IANRGEIACRVIKTARKMGISTVA-IYSDADKQALHV------QMADEA---VH--IGPPPANQSYIVIDKVMAAIRAT- 73 (681)
T ss_dssp BSCCHHHHHHHHHHHGGGSCCBCC-EECSTTSSCHHH------HHSSCC---EE--CSSSSGGGTTSCHHHHHHHHHHT-
T ss_pred EECCcHHHHHHHHHHHHcCCEEEE-EEcCCCCCChhH------HhCCEE---EE--cCCCCcccCccCHHHHHHHHHHh-
Confidence 468999999999999999986321 111122221111 123321 12 1111 111111234666666652
Q ss_pred CCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe--
Q psy7785 386 LSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL-- 461 (525)
Q Consensus 386 ~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv-- 461 (525)
+...+....|. ......+.+++.|+|++ ....+++..+ .+-..++++|+++|||+
T Consensus 74 -~~daI~pg~gflsE~~~~a~~le~~Gi~~i--Gp~~~ai~~~------------------~dK~~~k~~l~~~GVPvpp 132 (681)
T 3n6r_A 74 -GAQAVHPGYGFLSENSKFAEALEAEGVIFV--GPPKGAIEAM------------------GDKITSKKIAQEANVSTVP 132 (681)
T ss_dssp -CCSCCBCCSSSSTTCHHHHHHHHTTTCCCS--SSCHHHHHHT------------------TSHHHHHHHHHTTTCCCCC
T ss_pred -CcCEEEECCCccccCHHHHHHHHHcCCceE--CCCHHHHHHh------------------CCHHHHHHHHHHcCcCcCC
Confidence 22233221221 22345678889999987 5444555433 23457899999999998
Q ss_pred ---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhhh
Q psy7785 462 ---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDE 504 (525)
Q Consensus 462 ---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~ 504 (525)
..+.+.+++.+ .++++ |||||+|-....-.+|-+++..
T Consensus 133 ~~~~~~~s~~e~~~---~a~~i--gyPvVvKp~~ggggkGv~iv~~ 173 (681)
T 3n6r_A 133 GYMGLIEDADEAVK---ISNQI--GYPVMIKASAGGGGKGMRIAWN 173 (681)
T ss_dssp C---------------------------------------------
T ss_pred ccccCcCCHHHHHH---HHHhc--CCcEEEEECCCCCCCCEEEECC
Confidence 26788888887 46674 9999999988877777766654
No 91
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=95.98 E-value=0.055 Score=56.82 Aligned_cols=151 Identities=11% Similarity=0.152 Sum_probs=84.7
Q ss_pred CcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHH--HHHHHH
Q psy7785 302 GNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATI--AKGLVN 379 (525)
Q Consensus 302 ~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~i--a~~i~~ 379 (525)
.+|.|+ ++|..+...+.++.+.|.++- -+|-..+... .. .+. . |..++ +... ..... .+.|.+
T Consensus 3 k~ilI~-g~g~~~~~~~~a~~~~G~~vv-~v~~~~~~~~-~~---~~~--a----d~~~~-~~p~--~~~~~~d~~~l~~ 67 (451)
T 1ulz_A 3 NKVLVA-NRGEIAVRIIRACKELGIPTV-AIYNEVESTA-RH---VKL--A----DEAYM-IGTD--PLDTYLNKQRIIN 67 (451)
T ss_dssp SSEEEC-CCHHHHHHHHHHHHHHTCCEE-EEECGGGTTC-HH---HHH--S----SEEEE-CCSS--TTHHHHCHHHHHH
T ss_pred ceEEEE-CCcHHHHHHHHHHHHcCCeEE-EEechhhccc-ch---hhh--C----cEEEE-cCCC--cccccCCHHHHHH
Confidence 356665 577889999999999998631 0111111111 11 111 1 22222 1111 11111 256677
Q ss_pred HHHhcCCCCcEEEEeCC--cchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHC
Q psy7785 380 ACKSFKLSIPLVVRLEG--TNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDES 457 (525)
Q Consensus 380 a~~~~~~~kPivv~~~g--~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ay 457 (525)
.+++. +.-.++...| .......+.+++.|+|++ ....+++.... +-...+++|+++
T Consensus 68 ~~~~~--~~d~v~~~~g~~~e~~~~~~~~~~~gi~~~--g~~~~~~~~~~------------------dK~~~k~~l~~~ 125 (451)
T 1ulz_A 68 LALEV--GADAIHPGYGFLAENAEFAKMCEEAGITFI--GPHWKVIELMG------------------DKARSKEVMKKA 125 (451)
T ss_dssp HHHHT--TCCEEECCSSTTTTCHHHHHHHHHTTCEES--SSCHHHHHHHH------------------SHHHHHHHHHHT
T ss_pred HHHHc--CCCEEEECCCccccCHHHHHHHHHCCCeEE--CcCHHHHHHhc------------------CHHHHHHHHHHc
Confidence 66652 2223332222 112233567788999977 44344444332 123689999999
Q ss_pred CCCe---E--EEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785 458 KLPL---I--FASDLDEAASLVNACKSFKLSIPLVVRLEGTN 494 (525)
Q Consensus 458 GIpv---~--lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~ 494 (525)
|||+ . .+.+.+++.+ .++++ |||||+|-.+..
T Consensus 126 gip~p~~~~~~~~~~~~~~~---~~~~~--g~PvvvKp~~g~ 162 (451)
T 1ulz_A 126 GVPVVPGSDGVLKSLEEAKA---LAREI--GYPVLLKATAGG 162 (451)
T ss_dssp TCCBCCBCSSSCCCHHHHHH---HHHHH--CSSEEEEECSSS
T ss_pred CCCCCCCcccccCCHHHHHH---HHHHc--CCCEEEEECCCC
Confidence 9998 3 5778888887 45564 999999987654
No 92
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=95.88 E-value=0.0095 Score=60.08 Aligned_cols=81 Identities=12% Similarity=0.076 Sum_probs=56.3
Q ss_pred hCCC---CCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccc
Q psy7785 19 VSTV---HSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT 95 (525)
Q Consensus 19 ~~GI---pvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~ 95 (525)
+.|+ |.++.....+..+ +.+.+|| |+|+|+-. |+.|+ ||.+..+.++++..++.+...
T Consensus 127 ~~gi~~~P~~~~~~~~~~~~---~~~~~g~-PvVvK~~~--Gs~G~---------GV~lv~~~~~~~~~~~~~~~~---- 187 (309)
T 1i7n_A 127 TLGGEKFPLIEQTYYPNHRE---MLTLPTF-PVVVKIGH--AHSGM---------GKVKVENHYDFQDIASVVALT---- 187 (309)
T ss_dssp HHCTTTSCBCCCEEESSGGG---GSSCCCS-SEEEEESS--CSTTT---------TEEEECSHHHHHHHHHHHHHH----
T ss_pred hCCCCCCCCCCEEeeCChhh---hhhccCC-CEEEEeCC--CCcee---------CeEEECCHHHHHHHHHHHhcc----
Confidence 4666 8666555555544 4567887 99999843 33344 788999988888777655321
Q ss_pred ccCCCCCcccCeEEEEeeeCCceeEEEEEEEc
Q psy7785 96 KQTPKTGINVNKVMVAKSVNITRETYFCIVQD 127 (525)
Q Consensus 96 ~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D 127 (525)
-.-+++|||++.++.+.+.+.-+
T Consensus 188 ---------~~~~~vQefI~~g~DiRv~VvGg 210 (309)
T 1i7n_A 188 ---------QTYATAEPFIDAKYDIRVQKIGN 210 (309)
T ss_dssp ---------TCCEEEEECCCEEEEEEEEEETT
T ss_pred ---------CCeEEEEeecCCCceEEEEEECC
Confidence 13488999999888888888733
No 93
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=95.68 E-value=0.15 Score=53.33 Aligned_cols=152 Identities=11% Similarity=0.068 Sum_probs=83.9
Q ss_pred cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc-ccChHHHHHHHHHHH
Q psy7785 303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG-IVNCATIAKGLVNAC 381 (525)
Q Consensus 303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~-~~~~~~ia~~i~~a~ 381 (525)
+|.| .++|..+...+.++.+.|.++- -+|-..+.... ..+. . |-.++.-+.. ..+.. -.+.|.+.+
T Consensus 3 ~ilI-~g~g~~~~~i~~a~~~~G~~vv-~v~~~~~~~~~----~~~~--a----d~~~~i~~~~~~~~~~-d~~~l~~~~ 69 (451)
T 2vpq_A 3 KVLI-ANRGEIAVRIIRACRDLGIQTV-AIYSEGDKDAL----HTQI--A----DEAYCVGPTLSKDSYL-NIPNILSIA 69 (451)
T ss_dssp EEEE-CCCHHHHHHHHHHHHHTTCEEE-EEEEGGGTTCH----HHHH--S----SEEEEEECSSGGGTTT-CHHHHHHHH
T ss_pred eEEE-eCCCHHHHHHHHHHHHcCCEEE-EEecccccccc----hhhh--C----CEEEEcCCCCcccccc-CHHHHHHHH
Confidence 4554 5688899999999999998531 11211111111 1111 1 2222211110 01111 124566666
Q ss_pred HhcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCC
Q psy7785 382 KSFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKL 459 (525)
Q Consensus 382 ~~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGI 459 (525)
++. +.-+++...|. ......+.+++.|+|++ ....+++.... +-...+++|+++||
T Consensus 70 ~~~--~~d~v~~~~g~~~e~~~~~~~~~~~gi~~~--g~~~~~~~~~~------------------dK~~~k~~l~~~gi 127 (451)
T 2vpq_A 70 TST--GCDGVHPGYGFLAENADFAELCEACQLKFI--GPSYQSIQKMG------------------IKDVAKAEMIKANV 127 (451)
T ss_dssp HHT--TCSEEECCSSTTTTCHHHHHHHHTTTCEES--SSCHHHHHHHH------------------SHHHHHHHHHHTTC
T ss_pred HHc--CCCEEEECCCccccCHHHHHHHHHcCCeEE--CCCHHHHHHhc------------------CHHHHHHHHHHcCC
Confidence 552 22234332231 12234567788999977 43334443332 23468999999999
Q ss_pred Ce---E--EEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785 460 PL---I--FASDLDEAASLVNACKSFKLSIPLVVRLEGTN 494 (525)
Q Consensus 460 pv---~--lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~ 494 (525)
|+ . .+.+.+++.+ .++++ |||||+|-.+..
T Consensus 128 p~p~~~~~~~~~~~~~~~---~~~~~--g~PvvvKp~~g~ 162 (451)
T 2vpq_A 128 PVVPGSDGLMKDVSEAKK---IAKKI--GYPVIIKATAGG 162 (451)
T ss_dssp CBCSBCSSCBSCHHHHHH---HHHHH--CSSEEEEETTCC
T ss_pred CcCCCcccCcCCHHHHHH---HHHhc--CCcEEEEECCCC
Confidence 99 4 6788888877 45564 999999987654
No 94
>2q7d_A Inositol-tetrakisphosphate 1-kinase; inositol kinase, ITPK1, inositol 1,3,4-5/6 phosphate, inositol phosphate, inositolphosphate; HET: ANP; 1.60A {Homo sapiens} PDB: 2qb5_A* 2odt_X
Probab=95.52 E-value=0.011 Score=60.53 Aligned_cols=78 Identities=14% Similarity=0.228 Sum_probs=53.9
Q ss_pred CCCCCCCccccCC--HHHHHHHHH--hcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccc
Q psy7785 20 STVHSTDKVCLED--ARTATNILK--DLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT 95 (525)
Q Consensus 20 ~GIpvp~~~~~~~--~eea~~~a~--~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~ 95 (525)
.|||+|++.++.+ ++++.+..+ .+|| |+|+|+..-.|+. .-||.+..+.+++.. +
T Consensus 134 ~gIp~P~t~~~~~~~~~~~~~~~~~~~lg~-P~VvKP~~g~Gs~---------s~~v~~v~~~~~l~~---------~-- 192 (346)
T 2q7d_A 134 DRICSPPFMELTSLCGDDTMRLLEKNGLTF-PFICKTRVAHGTN---------SHEMAIVFNQEGLNA---------I-- 192 (346)
T ss_dssp TTEECCCEEEECSCCCTTHHHHHHHTTCCS-SEEEECSBCSSTT---------CCEEEEECSGGGTTC------------
T ss_pred CCCCCCCEEEEeCCCHHHHHHHHHhcCCCC-CEEEEecCCCcce---------eeeeEEecCHHHHHh---------c--
Confidence 4999999999986 356666554 5786 9999995333221 237778777666442 1
Q ss_pred ccCCCCCcccCeEEEEeeeCC-ceeEEEEEEEc
Q psy7785 96 KQTPKTGINVNKVMVAKSVNI-TRETYFCIVQD 127 (525)
Q Consensus 96 ~~~~~~g~~~~~vlVee~~~~-~~E~~vgv~~D 127 (525)
-..++||||+++ +.++-+.+.-|
T Consensus 193 ---------~~~~lvQefI~~~G~dirv~VvG~ 216 (346)
T 2q7d_A 193 ---------QPPCVVQNFINHNAVLYKVFVVGE 216 (346)
T ss_dssp ----------CCEEEEECCCCTTEEEEEEEETT
T ss_pred ---------CCCEEEEEeeCCCCeEEEEEEECC
Confidence 124899999974 78999988744
No 95
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=95.13 E-value=0.05 Score=55.74 Aligned_cols=144 Identities=15% Similarity=0.092 Sum_probs=81.7
Q ss_pred CcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHH
Q psy7785 302 GNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNAC 381 (525)
Q Consensus 302 ~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~ 381 (525)
.+|.|+ ++|..|...+.++.+.|..+ --+|...+... .. . .|..+. . ...+. +.+.+.+
T Consensus 12 ~~ili~-g~g~~~~~~~~a~~~~G~~v-~~~~~~~~~~~------~~--~----~d~~~~-~--~~~d~----~~l~~~~ 70 (391)
T 1kjq_A 12 TRVMLL-GSGELGKEVAIECQRLGVEV-IAVDRYADAPA------MH--V----AHRSHV-I--NMLDG----DALRRVV 70 (391)
T ss_dssp CEEEEE-SCSHHHHHHHHHHHTTTCEE-EEEESSTTCGG------GG--G----SSEEEE-C--CTTCH----HHHHHHH
T ss_pred CEEEEE-CCCHHHHHHHHHHHHcCCEE-EEEECCCCCch------hh--h----ccceEE-C--CCCCH----HHHHHHH
Confidence 478887 55667888889999988742 22333222110 00 1 122222 1 11222 3455555
Q ss_pred HhcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHH-HHCCCC
Q psy7785 382 KSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRIL-DESKLP 460 (525)
Q Consensus 382 ~~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL-~ayGIp 460 (525)
++. +.-+++...+.......+.+++.|++++ ++++. +.... +-...+++| +++|||
T Consensus 71 ~~~--~~d~v~~~~e~~~~~~~~~l~~~gi~~~--~~~~~-~~~~~------------------dK~~~~~~l~~~~gip 127 (391)
T 1kjq_A 71 ELE--KPHYIVPEIEAIATDMLIQLEEEGLNVV--PCARA-TKLTM------------------NREGIRRLAAEELQLP 127 (391)
T ss_dssp HHH--CCSEEEECSSCSCHHHHHHHHHTTCEES--SCHHH-HHHHH------------------SHHHHHHHHHTTSCCC
T ss_pred HHc--CCCEEEECCCcCCHHHHHHHHhCCCCcC--CCHHH-HHHhh------------------CHHHHHHHHHHhCCCC
Confidence 442 2233433333222334566788899766 66543 32221 123578898 899999
Q ss_pred e---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785 461 L---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN 494 (525)
Q Consensus 461 v---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~ 494 (525)
+ ..+.+.+++.+ .++++ |||+|+|-.+..
T Consensus 128 ~p~~~~~~~~~~~~~---~~~~~--g~P~vvKp~~g~ 159 (391)
T 1kjq_A 128 TSTYRFADSESLFRE---AVADI--GYPCIVKPVMSS 159 (391)
T ss_dssp BCCEEEESSHHHHHH---HHHHH--CSSEEEEESCC-
T ss_pred CCCeeeeCCHHHHHH---HHHhc--CCCEEEEeCCCC
Confidence 9 77889988877 45564 999999987643
No 96
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=95.11 E-value=0.018 Score=58.89 Aligned_cols=81 Identities=10% Similarity=0.081 Sum_probs=55.3
Q ss_pred hCCC---CCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccc
Q psy7785 19 VSTV---HSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT 95 (525)
Q Consensus 19 ~~GI---pvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~ 95 (525)
+.|+ |.++.....+..+ +.+.+|| |+|+|+-. |+.|+ ||.+..+.++++..++.+...
T Consensus 144 ~~gi~~~P~~~~t~~~~~~~---~~~~~g~-PvVvK~~~--Gs~G~---------GV~lve~~~~~~~~~~~~~~~---- 204 (344)
T 2p0a_A 144 SLGPEKFPLVEQTFFPNHKP---MVTAPHF-PVVVKLGH--AHAGM---------GKIKVENQLDFQDITSVVAMA---- 204 (344)
T ss_dssp HHCTTTSCBCCCEEESSSTT---CCCCSSS-SEEEEESS--CCTTT---------TEEEECSHHHHHHHHHHHHHH----
T ss_pred HCCCCCCCCCCEEecCchhh---hhhccCC-CEEEEeCC--CCcee---------CeEEECCHHHHHHHHHHHhcc----
Confidence 4566 8655555555443 4557887 99999853 33344 788888988888776654321
Q ss_pred ccCCCCCcccCeEEEEeeeCCceeEEEEEEEc
Q psy7785 96 KQTPKTGINVNKVMVAKSVNITRETYFCIVQD 127 (525)
Q Consensus 96 ~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D 127 (525)
-.-+++|||++.++.+.+.+.-+
T Consensus 205 ---------~~~~~vQefI~~g~DiRv~VVGg 227 (344)
T 2p0a_A 205 ---------KTYATTEAFIDSKYDIRIQKIGS 227 (344)
T ss_dssp ---------TCCEEEEECCCEEEEEEEEEETT
T ss_pred ---------CCeEEEEeccCCCccEEEEEECC
Confidence 13478999999888888888733
No 97
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=95.03 E-value=0.084 Score=55.04 Aligned_cols=149 Identities=15% Similarity=0.146 Sum_probs=82.0
Q ss_pred CcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHH
Q psy7785 302 GNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNAC 381 (525)
Q Consensus 302 ~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~ 381 (525)
.+|.|+ ++|..|...+.++.+.|..+ -.+|...+. + .... . |-.++ ....+. +.+.+.+
T Consensus 20 ~~ili~-g~g~~g~~~~~a~~~~G~~v-~~v~~~~~~-~-----~~~~--a----d~~~~---~~~~d~----~~l~~~~ 78 (433)
T 2dwc_A 20 QKILLL-GSGELGKEIAIEAQRLGVEV-VAVDRYANA-P-----AMQV--A----HRSYV---GNMMDK----DFLWSVV 78 (433)
T ss_dssp CEEEEE-SCSHHHHHHHHHHHHTTCEE-EEEESSTTC-H-----HHHH--S----SEEEE---SCTTCH----HHHHHHH
T ss_pred CEEEEE-CCCHHHHHHHHHHHHCCCEE-EEEECCCCC-h-----hhhh--c----ceEEE---CCCCCH----HHHHHHH
Confidence 478887 45667888889999988753 122322221 1 1111 1 22222 112232 3445555
Q ss_pred HhcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHH-HHCCCC
Q psy7785 382 KSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRIL-DESKLP 460 (525)
Q Consensus 382 ~~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL-~ayGIp 460 (525)
++. +.-+++...+.......+.+++.|+++. ++++. +.... +-...+++| +++|||
T Consensus 79 ~~~--~~d~V~~~~e~~~~~~~~~l~~~gi~~~--~~~~~-~~~~~------------------dK~~~k~~l~~~~gip 135 (433)
T 2dwc_A 79 ERE--KPDAIIPEIEAINLDALFEFEKDGYFVV--PNARA-TWIAM------------------HRERLRETLVKEAKVP 135 (433)
T ss_dssp HHH--CCSEEEECSSCSCHHHHHHHHHTTCCBS--SCHHH-HHHHH------------------CHHHHHHHHHHTSCCC
T ss_pred HHc--CCCEEEECcccCCHHHHHHHHhcCCeeC--CCHHH-HHHhh------------------CHHHHHHHHHHhcCCC
Confidence 432 2223433333222344567888899766 66442 22221 123578898 899999
Q ss_pred e---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHH
Q psy7785 461 L---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGK 499 (525)
Q Consensus 461 v---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~ 499 (525)
+ ..+.+.+++.+ .++++ |||+|+|-.+..-.+|-
T Consensus 136 ~p~~~~~~~~~~~~~---~~~~~--g~P~vvKp~~g~gg~Gv 172 (433)
T 2dwc_A 136 TSRYMYATTLDELYE---ACEKI--GYPCHTKAIMSSSGKGS 172 (433)
T ss_dssp CCCEEEESSHHHHHH---HHHHH--CSSEEEEECCC------
T ss_pred CCCeeEeCCHHHHHH---HHHhc--CCCEEEEECCCcCCCCe
Confidence 9 77889888877 45564 99999999875544443
No 98
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=94.97 E-value=0.024 Score=59.28 Aligned_cols=81 Identities=11% Similarity=0.112 Sum_probs=55.6
Q ss_pred hCCC---CCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhcccccc
Q psy7785 19 VSTV---HSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT 95 (525)
Q Consensus 19 ~~GI---pvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~ 95 (525)
+.|+ |.++.....+..+ +.+.+|| |+|+|+-. |+.|+ ||.+..+.++++..++.+...
T Consensus 239 ~~gi~~iP~t~~t~~~~~~~---~i~~~g~-PvVvKp~~--GS~G~---------GV~lve~~~~l~~ii~~~~~~---- 299 (422)
T 1pk8_A 239 KLGTEEFPLIDQTFYPNHKE---MLSSTTY-PVVVKMGH--AHSGM---------GKVKVDNQHDFQDIASVVALT---- 299 (422)
T ss_dssp HHCTTTSCBCCCEEESSGGG---CCCCSSS-SEEEEESS--CCTTT---------TEEEECSHHHHHHHHHHHHHH----
T ss_pred hCCCCCCCCCceEecCchhh---hhhccCC-CEEEEeCC--CCcee---------CeEEeCCHHHHHHHHHHHhcc----
Confidence 4566 8555555555443 4566787 99999853 33344 788998988888777655321
Q ss_pred ccCCCCCcccCeEEEEeeeCCceeEEEEEEEc
Q psy7785 96 KQTPKTGINVNKVMVAKSVNITRETYFCIVQD 127 (525)
Q Consensus 96 ~~~~~~g~~~~~vlVee~~~~~~E~~vgv~~D 127 (525)
-.-++||||++.++.+.+.+.-+
T Consensus 300 ---------~~~~~vQEfI~~g~DIRv~VVGg 322 (422)
T 1pk8_A 300 ---------KTYATAEPFIDAKYDVRVQKIGQ 322 (422)
T ss_dssp ---------TSCEEEEECCCEEEEEEEEEETT
T ss_pred ---------CceEEEEeecCCCceEEEEEECC
Confidence 13479999999888888888733
No 99
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=94.92 E-value=0.023 Score=58.23 Aligned_cols=67 Identities=18% Similarity=0.284 Sum_probs=46.7
Q ss_pred HHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChh----HHHHHHHH
Q psy7785 404 RILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLD----EAASLVNA 476 (525)
Q Consensus 404 ~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~d----eAv~~~~a 476 (525)
..|+..|+|++ .+...++.... +-...|++|+++|||+ ..+.+.+ ++.+ .
T Consensus 118 ~~le~~gip~~--G~~~~a~~~~~------------------DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~---~ 174 (364)
T 3i12_A 118 GMLRVANLPFV--GSDVLSSAACM------------------DKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAE---V 174 (364)
T ss_dssp HHHHHTTCCBS--SCCHHHHHHHH------------------CHHHHHHHHHHTTCCBCCEEEEETTTGGGCCHHH---H
T ss_pred HHHHHcCCCcc--CCCHHHHHHHH------------------CHHHHHHHHHHCCCCCCCEEEEEccccchhhHHH---H
Confidence 46778899988 54444443321 2346899999999999 6666665 5555 3
Q ss_pred hhhcCCCCcEEEEEecCCh
Q psy7785 477 CKSFKLSIPLVVRLEGTNV 495 (525)
Q Consensus 477 a~~~~~G~PVVlKi~~~~~ 495 (525)
++++ |||||+|-....-
T Consensus 175 ~~~l--g~PvvVKP~~ggs 191 (364)
T 3i12_A 175 ESRL--GLPLFVKPANQGS 191 (364)
T ss_dssp HHHH--CSSEEEEETTCCT
T ss_pred HHhc--CCCEEEEECCCCC
Confidence 4564 9999999876653
No 100
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=94.80 E-value=0.074 Score=55.92 Aligned_cols=67 Identities=15% Similarity=0.193 Sum_probs=48.3
Q ss_pred HHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhh
Q psy7785 402 GKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACK 478 (525)
Q Consensus 402 ~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~ 478 (525)
..+.|++.|+|++ ....+++.... +-...+++|+++|||+ ..+.+.+++.+ .++
T Consensus 99 ~~~~l~~~gi~~~--g~~~~~~~~~~------------------dK~~~k~~l~~~gip~p~~~~~~~~~~~~~---~~~ 155 (451)
T 2yrx_A 99 IVDRFMAEGLRIF--GPSQRAALIEG------------------SKAFAKELMKKYGIPTADHAAFTSYEEAKA---YIE 155 (451)
T ss_dssp HHHHHHHTTCCEE--SCCHHHHHHHH------------------CHHHHHHHHHHTTCCBCCEEEESCHHHHHH---HHH
T ss_pred HHHHHHHCCCCEe--CccHHHHHHhh------------------CHHHHHHHHHHcCCCCCCeEEECCHHHHHH---HHH
Confidence 3556788999988 44444443332 2336789999999999 77889998877 345
Q ss_pred hcCCCCcEEEEEecC
Q psy7785 479 SFKLSIPLVVRLEGT 493 (525)
Q Consensus 479 ~~~~G~PVVlKi~~~ 493 (525)
++ |||+|+|-...
T Consensus 156 ~~--~~PvVvKp~~~ 168 (451)
T 2yrx_A 156 QK--GAPIVIKADGL 168 (451)
T ss_dssp HH--CSSEEEEECC-
T ss_pred hc--CCcEEEEeCCC
Confidence 64 99999998765
No 101
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=94.77 E-value=0.067 Score=55.51 Aligned_cols=67 Identities=18% Similarity=0.197 Sum_probs=49.0
Q ss_pred HHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhh
Q psy7785 402 GKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACK 478 (525)
Q Consensus 402 ~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~ 478 (525)
..+.+++.|+|++ ....+++.... +-...+++|+++|||+ ..+.+.+++.+ .++
T Consensus 77 ~~~~l~~~gi~~~--g~~~~~~~~~~------------------dK~~~~~~l~~~gip~p~~~~~~~~~~~~~---~~~ 133 (417)
T 2ip4_A 77 IADAFQARGLLLF--GPTQKAAMIEG------------------SKAFAKGLMERYGIPTARYRVFREPLEALA---YLE 133 (417)
T ss_dssp HHHHHHHHTCCEE--SCCHHHHHHHH------------------CHHHHHHHHHHTCCCBCCEEEESSHHHHHH---HHH
T ss_pred HHHHHHHCCCCEE--CccHHHHHHHc------------------CHHHHHHHHHHcCCCCCCeeeeCCHHHHHH---HHH
Confidence 4566778899988 55455554332 2346889999999999 67889998887 345
Q ss_pred hcCCCCcEEEEEecC
Q psy7785 479 SFKLSIPLVVRLEGT 493 (525)
Q Consensus 479 ~~~~G~PVVlKi~~~ 493 (525)
++ |||+|+|-.+.
T Consensus 134 ~~--~~P~vvKp~~~ 146 (417)
T 2ip4_A 134 EV--GVPVVVKDSGL 146 (417)
T ss_dssp HH--CSSEEEECTTS
T ss_pred Hc--CCCEEEEECCC
Confidence 64 99999998654
No 102
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=94.71 E-value=0.0059 Score=61.91 Aligned_cols=81 Identities=11% Similarity=0.154 Sum_probs=46.7
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
+.|||+|++.- ++++ +++| ||+||+....+ || |+.+..| +|+..+++++
T Consensus 108 ~~Gip~P~~~~---~ee~-----~i~~-PviVKp~~g~g--gk---------G~~~v~~-eel~~~~~~~---------- 156 (320)
T 2pbz_A 108 GAGIPRVEVVE---PEDA-----KPDE-LYFVRIEGPRG--GS---------GHFIVEG-SELEERLSTL---------- 156 (320)
T ss_dssp HHTCCBCCBCC---SCCC-----CSSC-CEEEECC-----------------------C-EECSCCCC------------
T ss_pred HCCcCCCCeeC---HhHc-----CcCC-cEEEEECCCCC--CC---------CEEEECh-HHHHHHHHhc----------
Confidence 79999999872 4443 5787 99999964434 34 6777778 8765432221
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcCCCCccEEEec
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIIS 138 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~f~gpvi~~g 138 (525)
+ ..++||||++ +.+.+..+..++.. |-+.+++
T Consensus 157 ---~---~~~IiEEfI~-g~~~~~~~f~~~~~-g~~e~~~ 188 (320)
T 2pbz_A 157 ---E---EPYRVERFIP-GVYLYVHFFYSPIL-ERLELLG 188 (320)
T ss_dssp --------CCEEEECCC-SCEEEEEEEEETTT-TEEEEEE
T ss_pred ---C---CCEEEEeeec-eEecceeEEecccc-CceeEEE
Confidence 1 3589999998 57777666777665 4455555
No 103
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=94.59 E-value=0.036 Score=57.47 Aligned_cols=70 Identities=16% Similarity=0.324 Sum_probs=46.9
Q ss_pred HHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChh----HHHHHHHH
Q psy7785 404 RILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLD----EAASLVNA 476 (525)
Q Consensus 404 ~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~d----eAv~~~~a 476 (525)
..|+..|+|++ .+...++.... +-...|++|+++|||+ .++.+.+ ++.+ .
T Consensus 137 ~lle~~gipy~--G~~~~a~~~~~------------------DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~---~ 193 (386)
T 3e5n_A 137 GLLRMANLPFV--GSGVLGSAVAM------------------DKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDT---L 193 (386)
T ss_dssp HHHHHTTCCBS--SCCHHHHHHHH------------------BHHHHHHHHHHTTCCBCCEEEEEHHHHTTCCHHH---H
T ss_pred HHHHHcCCCcc--CCCHHHHHHHh------------------CHHHHHHHHHHCCCCCCCEEEEeCcccchhhHHH---H
Confidence 46778899987 54433333321 1336899999999999 5666665 5555 3
Q ss_pred hhhcCCCCcEEEEEecCChHHH
Q psy7785 477 CKSFKLSIPLVVRLEGTNVQEG 498 (525)
Q Consensus 477 a~~~~~G~PVVlKi~~~~~~~~ 498 (525)
++++ |||||+|-....-..|
T Consensus 194 ~~~l--g~PvvVKP~~ggss~G 213 (386)
T 3e5n_A 194 IAQL--GLPLFVKPANQGSSVG 213 (386)
T ss_dssp HHHH--CSSEEEEESBSCSSTT
T ss_pred HHhc--CCCEEEEECCCCcCCC
Confidence 4564 9999999876654333
No 104
>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*
Probab=94.54 E-value=0.089 Score=54.64 Aligned_cols=141 Identities=14% Similarity=0.128 Sum_probs=83.3
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHH
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNA 380 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a 380 (525)
+.+|+|+. ||..|.+.+.++.+.|.++ --+| ..+.....+ .|. .. .+ .....+. +.+.+.
T Consensus 24 ~~~I~ilG-gG~lg~~l~~aa~~lG~~v-~~~d-~~~~p~~~~--------ad~-~~-~~---~~~~~d~----~~l~~~ 83 (403)
T 3k5i_A 24 SRKVGVLG-GGQLGRMLVESANRLNIQV-NVLD-ADNSPAKQI--------SAH-DG-HV---TGSFKER----EAVRQL 83 (403)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHHTCEE-EEEE-STTCTTGGG--------CCS-SC-CE---ESCTTCH----HHHHHH
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCEE-EEEE-CCCCcHHHh--------ccc-cc-ee---ecCCCCH----HHHHHH
Confidence 45787775 5679999999999999863 2334 333322211 121 01 11 1122232 244444
Q ss_pred HHhcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCC
Q psy7785 381 CKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLP 460 (525)
Q Consensus 381 ~~~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIp 460 (525)
++. .+ +++.-...-..+..+.|++ |+|++ ++++. +... .+-...|++|+++|||
T Consensus 84 a~~--~d--~i~~e~e~~~~~~l~~l~~-g~~v~--p~~~a-~~~~------------------~dK~~~k~~l~~~Gip 137 (403)
T 3k5i_A 84 AKT--CD--VVTAEIEHVDTYALEEVAS-EVKIE--PSWQA-IRTI------------------QNKFNQKEHLRKYGIP 137 (403)
T ss_dssp HTT--CS--EEEESSSCSCHHHHHHHTT-TSEES--SCHHH-HHHH------------------TSHHHHHHHHHTTTCC
T ss_pred HHh--CC--EEEECCCCCCHHHHHHHHc-CCccC--cCHHH-HHHh------------------cCHHHHHHHHHHCCcC
Confidence 443 22 3332212223455677888 99977 66543 2221 1234688999999999
Q ss_pred e---EEEc--ChhHHHHHHHHhhhcCCCCcEEEEEec
Q psy7785 461 L---IFAS--DLDEAASLVNACKSFKLSIPLVVRLEG 492 (525)
Q Consensus 461 v---~lA~--s~deAv~~~~aa~~~~~G~PVVlKi~~ 492 (525)
+ ..+. +.+++.+ +++++ |||+|+|-..
T Consensus 138 ~p~~~~~~~~~~~~~~~---~~~~~--g~P~VvKp~~ 169 (403)
T 3k5i_A 138 MAEHRELVENTPAELAK---VGEQL--GYPLMLKSKT 169 (403)
T ss_dssp BCCEEEESSCCHHHHHH---HHHHH--CSSEEEEESS
T ss_pred CCCEEEEcCCCHHHHHH---HHHHh--CCCEEEEeCC
Confidence 9 6777 8888877 45564 9999999953
No 105
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=94.45 E-value=0.033 Score=55.69 Aligned_cols=70 Identities=14% Similarity=0.110 Sum_probs=45.9
Q ss_pred HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHH-hh
Q psy7785 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNA-CK 478 (525)
Q Consensus 403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~a-a~ 478 (525)
...|+..|+|++ .+...++.... +-...+++|+++|||+ .++.+.+++.+.++. .+
T Consensus 84 ~~~le~~gip~~--g~~~~~~~~~~------------------dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~ 143 (317)
T 4eg0_A 84 QGALDFYGIRYT--GSGVLGSALGL------------------DKFRTKLVWQQTGVPTPPFETVMRGDDYAARATDIVA 143 (317)
T ss_dssp HHHHHHHTCEES--SCCHHHHHHHH------------------CHHHHHHHHHHTTCCCCCEEEEETTSCHHHHHHHHHH
T ss_pred HHHHHHcCCCee--CcCHHHHHHHh------------------CHHHHHHHHHHCCcCCCCEEEEECchhHHHHHHHHHH
Confidence 356777899987 54444443321 2346899999999999 677777776653210 14
Q ss_pred hcCCCCcEEEEEecCC
Q psy7785 479 SFKLSIPLVVRLEGTN 494 (525)
Q Consensus 479 ~~~~G~PVVlKi~~~~ 494 (525)
++ |||||+|-....
T Consensus 144 ~~--g~PvvvKP~~~~ 157 (317)
T 4eg0_A 144 KL--GLPLFVKPASEG 157 (317)
T ss_dssp HH--CSCEEEEECC--
T ss_pred hc--CCCEEEEeCCCC
Confidence 54 999999986654
No 106
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=94.44 E-value=0.028 Score=57.23 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=43.4
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
++|||+|++. .+|| |+|||+....+| + ||.+..|.+++.. .
T Consensus 113 ~~gip~~~~~-------------~ig~-P~vvKp~~g~g~--~---------gv~~v~~~~~~~~---------~----- 153 (363)
T 4ffl_A 113 SIGVPTPQDR-------------PSKP-PYFVKPPCESSS--V---------GARIIYDDKDLEG---------L----- 153 (363)
T ss_dssp HTTCCCCCBS-------------CSSS-CEEEECSSCCTT--T---------TCEEEC------C---------C-----
T ss_pred hcCCCCCCce-------------ecCC-CEEEEECCCCCC--c---------CeEEeccHHHhhh---------h-----
Confidence 7899998764 3587 999998644332 2 6777777654320 1
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcCC
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDRL 129 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~~ 129 (525)
...+++|++++ +.|+.+.+..|..
T Consensus 154 ------~~~~~~ee~i~-g~e~sv~~~~d~~ 177 (363)
T 4ffl_A 154 ------EPDTLVEEYVE-GEVVSLEVVGDGS 177 (363)
T ss_dssp ------CTTCEEEECCC-SEEEEEEEEEESS
T ss_pred ------ccchhhhhhcc-CcEEEEEEEEECC
Confidence 24579999997 7899999999864
No 107
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=94.31 E-value=0.059 Score=56.80 Aligned_cols=155 Identities=10% Similarity=0.091 Sum_probs=82.4
Q ss_pred CcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHH
Q psy7785 302 GNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNAC 381 (525)
Q Consensus 302 ~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~ 381 (525)
.+|.|+ ++|..+...+.++.+.|.++- -+|...+... ... + ..|. .+.+...........-.+.|.+.+
T Consensus 7 k~ILI~-g~g~~~~~i~~a~~~~G~~vv-~v~~~~~~~~-~~~---~--~ad~---~~~i~~~~~~~~~y~d~~~l~~~~ 75 (461)
T 2dzd_A 7 RKVLVA-NRGEIAIRVFRACTELGIRTV-AIYSKEDVGS-YHR---Y--KADE---AYLVGEGKKPIEAYLDIEGIIEIA 75 (461)
T ss_dssp SEEEEC-SCHHHHHHHHHHHHHHTCEEE-EEECGGGTTC-THH---H--HSSS---EEECSTTSCTTGGGTCHHHHHHHH
T ss_pred cEEEEE-CCcHHHHHHHHHHHHcCCEEE-EEECCccccc-chh---h--hCCE---EEEcCCCCCccccccCHHHHHHHH
Confidence 467665 667788888999999998531 0111111110 011 1 1221 112110000000001124566666
Q ss_pred HhcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCC
Q psy7785 382 KSFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKL 459 (525)
Q Consensus 382 ~~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGI 459 (525)
++ .+.-.++...|. +.....+.+++.|+|++ ....+++... .+-...+++|+++||
T Consensus 76 ~~--~~id~v~~~~g~~~E~~~~~~~~~~~gi~~~--g~~~~~~~~~------------------~dK~~~k~~l~~~Gi 133 (461)
T 2dzd_A 76 KA--HDVDAIHPGYGFLSENIQFAKRCREEGIIFI--GPNENHLDMF------------------GDKVKARHAAVNAGI 133 (461)
T ss_dssp HH--TTCCEEECCSSSSTTCHHHHHHHHHTTCEES--SCCHHHHHHT------------------TSHHHHHHHHHHTTC
T ss_pred HH--hCCCEEEECCCccccCHHHHHHHHHcCCEEE--CCCHHHHHHh------------------hCHHHHHHHHHHcCC
Confidence 55 222233322221 12234567788999976 3333333322 123468999999999
Q ss_pred Ce---E--EEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785 460 PL---I--FASDLDEAASLVNACKSFKLSIPLVVRLEGTN 494 (525)
Q Consensus 460 pv---~--lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~ 494 (525)
|+ . .+.+.+++.+ .++++ |||||+|-.+..
T Consensus 134 p~p~~~~~~~~~~~~~~~---~~~~~--g~PvvvKp~~g~ 168 (461)
T 2dzd_A 134 PVIPGSDGPVDGLEDVVA---FAEAH--GYPIIIKAALGG 168 (461)
T ss_dssp CBCCBCSSCCSSHHHHHH---HHHHH--CSCEEEEESTTC
T ss_pred CCCCCcccCcCCHHHHHH---HHHhc--CCcEEEEeCCCC
Confidence 99 3 5788898887 35564 999999997665
No 108
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid, lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB: 3mwe_A*
Probab=94.18 E-value=0.039 Score=57.95 Aligned_cols=42 Identities=17% Similarity=0.074 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHCCC---Ce------EEEcCh---hHHHHHHHHhhhcCCC-CcEEEEEec
Q psy7785 446 NVQEGKRILDESKL---PL------IFASDL---DEAASLVNACKSFKLS-IPLVVRLEG 492 (525)
Q Consensus 446 ~e~eak~LL~ayGI---pv------~lA~s~---deAv~~~~aa~~~~~G-~PVVlKi~~ 492 (525)
.|+++|+||+.||+ |. ..+++. +||++ +++++ | ||||||.+.
T Consensus 7 ~Ey~~K~ll~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~---~a~~l--g~~pvVvKaqv 61 (425)
T 3mwd_A 7 SEQTGKELLYKFICTTSAIQNRFKYARVTPDTDWARLLQ---DHPWL--LSQNLVVKPDQ 61 (425)
T ss_dssp CHHHHHHHHHHHCCCSSCBCSTTCCEEECTTCCHHHHHH---HCGGG--GTSCEEEEECS
T ss_pred hHHHHHHHHHHhccccCCccCCcceEEeCCCCCHHHHHH---HHHHh--CCCCEEEEecc
Confidence 58999999999999 62 566666 55555 78886 6 999999855
No 109
>2cqy_A Propionyl-COA carboxylase alpha chain, mitochondrial; PCCA, B domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.15 E-value=0.01 Score=49.22 Aligned_cols=40 Identities=15% Similarity=0.352 Sum_probs=32.6
Q ss_pred HHHHHHHHCCCCe---E--EEcChhHHHHHHHHhhhcCCCCcEEEEEecC
Q psy7785 449 EGKRILDESKLPL---I--FASDLDEAASLVNACKSFKLSIPLVVRLEGT 493 (525)
Q Consensus 449 eak~LL~ayGIpv---~--lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~ 493 (525)
..+++|+++|||+ . .+.+.+++.+ +++++ |||||+|-...
T Consensus 11 ~~~~~l~~~gip~p~~~~~~~~~~~~~~~---~~~~~--~~P~vvKp~~~ 55 (108)
T 2cqy_A 11 ESKLLAKKAEVNTIPGFDGVVKDAEEAVR---IAREI--GYPVMIKASAG 55 (108)
T ss_dssp CSTTCCCSSCCCCCSCCCSCBSSHHHHHH---HHHHH--CSSEEEEETTS
T ss_pred HHHHHHHHcCCCCCCCcccccCCHHHHHH---HHHhc--CCCEEEEECCC
Confidence 4678999999998 4 7889998877 45564 99999999764
No 110
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=94.02 E-value=0.045 Score=55.86 Aligned_cols=71 Identities=10% Similarity=0.253 Sum_probs=46.9
Q ss_pred HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS 479 (525)
Q Consensus 403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~ 479 (525)
...|+..|||+. .+...++.... +-...|++|+++|||+ ....+.+++....+.+++
T Consensus 116 q~~le~~gip~~--G~~~~a~~~~~------------------DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~ 175 (357)
T 4fu0_A 116 QGIFELAGIPVV--GCDTLSSALCM------------------DKDRAHKLVSLAGISVPKSVTFKRFNEEAAMKEIEAN 175 (357)
T ss_dssp HHHHHHTTCCBS--SCCHHHHHHHH------------------CHHHHHHHHHHTTCBCCCEEEEEGGGHHHHHHHHHHH
T ss_pred HHHHHHCCCcEE--CcCHHHHHHHh------------------CHHHHHHHHHHCCCCCCCEEeecCCChHHHHHHHHHh
Confidence 457889999987 54444333321 1236899999999999 555555554433345667
Q ss_pred cCCCCcEEEEEecCCh
Q psy7785 480 FKLSIPLVVRLEGTNV 495 (525)
Q Consensus 480 ~~~G~PVVlKi~~~~~ 495 (525)
+ |||||+|=....-
T Consensus 176 l--g~PvvVKP~~gg~ 189 (357)
T 4fu0_A 176 L--TYPLFIKPVRAGS 189 (357)
T ss_dssp C--CSSEEEEETTCSS
T ss_pred c--CCCEEEEECCCCC
Confidence 4 9999999765443
No 111
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=93.97 E-value=0.048 Score=57.22 Aligned_cols=149 Identities=11% Similarity=0.097 Sum_probs=81.4
Q ss_pred cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecc----cccChHHHHHHHH
Q psy7785 303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFG----GIVNCATIAKGLV 378 (525)
Q Consensus 303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~----~~~~~~~ia~~i~ 378 (525)
+|.|+ ++|..+...+.++.+.|.++- -+|-..+... + ..+ .. |-.++.-+. ...+ .+.|.
T Consensus 4 ~ilI~-g~g~~~~~~~~a~~~~G~~vv-~v~~~~~~~~-~---~~~--~a----d~~~~~~p~~~~~~~~d----~~~l~ 67 (449)
T 2w70_A 4 KIVIA-NRGEIALRILRACKELGIKTV-AVHSSADRDL-K---HVL--LA----DETVCIGPAPSVKSYLN----IPAII 67 (449)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHTCEEE-EEEEGGGTTC-H---HHH--HS----SEEEEEECSSGGGTTTC----HHHHH
T ss_pred eEEEe-CCcHHHHHHHHHHHHcCCeEE-EEeccccccC-c---hhh--hC----CEEEEcCCCCccccccC----HHHHH
Confidence 55554 567889999999999998631 0111111110 1 111 12 222221111 1122 24555
Q ss_pred HHHHhcCCCCcEEEEeCC--cchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHH
Q psy7785 379 NACKSFKLSIPLVVRLEG--TNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDE 456 (525)
Q Consensus 379 ~a~~~~~~~kPivv~~~g--~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~a 456 (525)
+.+++. +.-.++...| .......+.+++.|+|++ ....+++.... +-...+++|++
T Consensus 68 ~~~~~~--~~d~v~~~~g~~~e~~~~~~~~e~~gi~~~--g~~~~~~~~~~------------------dK~~~k~~l~~ 125 (449)
T 2w70_A 68 SAAEIT--GAVAIHPGYGFLSENANFAEQVERSGFIFI--GPKAETIRLMG------------------DKVSAIAAMKK 125 (449)
T ss_dssp HHHHHH--TCCEEECCSSTTTTCHHHHHHHHHTTCEES--SSCHHHHHHHH------------------SHHHHHHHHHH
T ss_pred HHHHHc--CCCEEEECCCCcccCHHHHHHHHHcCCceE--CCCHHHHHHhc------------------CHHHHHHHHHH
Confidence 555542 2223332222 122334567888999976 43333443332 13368999999
Q ss_pred CCCCe---E--EEcChhHH-HHHHHHhhhcCCCCcEEEEEecCC
Q psy7785 457 SKLPL---I--FASDLDEA-ASLVNACKSFKLSIPLVVRLEGTN 494 (525)
Q Consensus 457 yGIpv---~--lA~s~deA-v~~~~aa~~~~~G~PVVlKi~~~~ 494 (525)
+|||+ . .+.+.+++ .+ .++++ |||||+|-.+..
T Consensus 126 ~gip~p~~~~~~~~~~~~~~~~---~~~~~--g~PvvvKp~~g~ 164 (449)
T 2w70_A 126 AGVPCVPGSDGPLGDDMDKNRA---IAKRI--GYPVIIKASGGG 164 (449)
T ss_dssp HTCCBCSBCSSCCCSCHHHHHH---HHHHH--CSSEEEEETTCC
T ss_pred cCCCcCCCcccccCCHHHHHHH---HHHHh--CCcEEEEECCCC
Confidence 99998 3 67888888 66 34564 999999987654
No 112
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=93.86 E-value=0.073 Score=55.26 Aligned_cols=67 Identities=18% Similarity=0.259 Sum_probs=47.4
Q ss_pred HHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhh
Q psy7785 402 GKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACK 478 (525)
Q Consensus 402 ~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~ 478 (525)
..+.|++.|+|++ ....+++.... +-...+++|+++|||+ ..+.+.+++.+ .++
T Consensus 78 ~~~~l~~~gi~~~--g~~~~~~~~~~------------------dK~~~k~~l~~~gip~p~~~~~~~~~~~~~---~~~ 134 (422)
T 2xcl_A 78 LVDEFEKAGLHVF--GPSKAAAIIEG------------------SKQFAKDLMKKYDIPTAEYETFTSFDEAKA---YVQ 134 (422)
T ss_dssp HHHHHHHTTCCEE--SCCTTTTHHHH------------------CHHHHHHHHHHTTCCBCCEEEESCHHHHHH---HHH
T ss_pred HHHHHHHCCCCEE--CcCHHHHHHhc------------------CHHHHHHHHHHcCCCCCCeEEECCHHHHHH---HHH
Confidence 3456778899987 33333332221 2346889999999999 77889998877 345
Q ss_pred hcCCCCcEEEEEecC
Q psy7785 479 SFKLSIPLVVRLEGT 493 (525)
Q Consensus 479 ~~~~G~PVVlKi~~~ 493 (525)
++ |||+|+|-.+.
T Consensus 135 ~~--~~P~vvKp~~~ 147 (422)
T 2xcl_A 135 EK--GAPIVIKADGL 147 (422)
T ss_dssp HH--CSSEEEEESSC
T ss_pred hc--CCCEEEEeCCC
Confidence 64 99999998765
No 113
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=93.84 E-value=0.091 Score=54.37 Aligned_cols=70 Identities=14% Similarity=0.243 Sum_probs=42.7
Q ss_pred HHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCC-CCe---EEEcChh----HHHHHHH
Q psy7785 404 RILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESK-LPL---IFASDLD----EAASLVN 475 (525)
Q Consensus 404 ~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayG-Ipv---~lA~s~d----eAv~~~~ 475 (525)
..|+..|+|++ .+...++.... +-...|++|+++| ||+ .++.+.+ ++.+
T Consensus 139 ~lle~~gipy~--G~~~~a~~~~~------------------DK~~~k~~l~~~G~Ipvp~~~~~~~~~~~~~~~~~--- 195 (383)
T 3k3p_A 139 GFLEVLKMPYV--GTNILSSSVAM------------------DKITTNQVLESATTIPQVAYVALIEGEPLESKLAE--- 195 (383)
T ss_dssp HHHHHTTCCBS--SCCHHHHHHHH------------------CHHHHHHHHHHHCCCCBCCEEEEETTSCHHHHHHH---
T ss_pred HHHHHcCCCcc--CCCHHHHHHHh------------------CHHHHHHHHHhCCCcCCCCEEEEeCccchhHHHHH---
Confidence 46777899987 44333333221 2346899999999 999 5555553 3333
Q ss_pred HhhhcCCCCcEEEEEecCChHHH
Q psy7785 476 ACKSFKLSIPLVVRLEGTNVQEG 498 (525)
Q Consensus 476 aa~~~~~G~PVVlKi~~~~~~~~ 498 (525)
.++++ |||||+|-....-..|
T Consensus 196 ~~~~l--g~PvvVKP~~ggss~G 216 (383)
T 3k3p_A 196 VEEKL--IYPVFVKPANMGSSVG 216 (383)
T ss_dssp HHHHC--CSSEEEEECC------
T ss_pred HHHhc--CCCEEEEeCCCCCCCC
Confidence 45564 9999999876654443
No 114
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=93.52 E-value=0.052 Score=63.99 Aligned_cols=161 Identities=11% Similarity=0.076 Sum_probs=88.1
Q ss_pred cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccC--hHHHHHHHHHH
Q psy7785 303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVN--CATIAKGLVNA 380 (525)
Q Consensus 303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~--~~~ia~~i~~a 380 (525)
+|.| .|+|..++..+-+|.+.|..+- -+|...+.... ..- -.|-.+. +..+... .....+.|+++
T Consensus 6 kVLI-agrGeia~riiraa~elGi~vV-av~s~~d~~s~------~~~----~ADe~~~-ig~~~~~~~syld~~~Ii~~ 72 (1150)
T 3hbl_A 6 KLLV-ANRGEIAIRIFRAAAELDISTV-AIYSNEDKSSL------HRY----KADESYL-VGSDLGPAESYLNIERIIDV 72 (1150)
T ss_dssp EEEE-CCCHHHHHHHHHHHHHTTCEEE-EEECGGGTTCG------GGG----TSSEEEE-CCTTSCTTGGGTCHHHHHHH
T ss_pred EEEE-ECCCHHHHHHHHHHHHCCCEEE-EEEcCCcccch------hhh----hcceeee-cCCCCCccccccCHHHHHHH
Confidence 4555 7888899999999999998520 01111111100 000 1222221 2211111 11113466666
Q ss_pred HHhcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCC
Q psy7785 381 CKSFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESK 458 (525)
Q Consensus 381 ~~~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayG 458 (525)
+++ .+.-.+....|. ......+.+++.|+|++ ....+++..+. +-..++++|+++|
T Consensus 73 a~~--~~~DaI~pg~gflsE~~~~a~~le~~Gi~~i--Gp~~eai~~~~------------------DK~~~r~ll~~aG 130 (1150)
T 3hbl_A 73 AKQ--ANVDAIHPGYGFLSENEQFARRCAEEGIKFI--GPHLEHLDMFG------------------DKVKARTTAIKAD 130 (1150)
T ss_dssp HHH--TTCSEEECTTTTSTTCHHHHHHHHHTTCEES--SSCHHHHHHHH------------------SHHHHHHHHHHTT
T ss_pred HHH--hCCCEEEECCCcccccHHHHHHHHHCCCCee--CCCHHHHHHhC------------------CHHHHHHHHHHcC
Confidence 666 333333322231 22344667888999987 54445555442 2346899999999
Q ss_pred CCe---E--EEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhh
Q psy7785 459 LPL---I--FASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILD 503 (525)
Q Consensus 459 Ipv---~--lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~ 503 (525)
||+ . .+.+.+++.+ .++++ |||||+|-....-..|-+++.
T Consensus 131 IPvpp~~~~~v~s~eea~~---~a~~i--GyPvVVKP~~GgGg~Gv~vv~ 175 (1150)
T 3hbl_A 131 LPVIPGTDGPIKSYELAKE---FAEEA--GFPLMIKATSGGGGKGMRIVR 175 (1150)
T ss_dssp CCBCCBCSSCBCSSSTTTT---TGGGT--CSSEEEECCC-------CEEC
T ss_pred cCCCCccccCCCCHHHHHH---HHHHc--CCCEEEEeCCCCCCCCEEEEC
Confidence 999 3 6788888876 56674 999999998777666655544
No 115
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=93.41 E-value=0.075 Score=62.78 Aligned_cols=162 Identities=11% Similarity=0.112 Sum_probs=66.6
Q ss_pred cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc------ccChHHH--H
Q psy7785 303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG------IVNCATI--A 374 (525)
Q Consensus 303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~------~~~~~~i--a 374 (525)
+--+|.|-|-.++-.+-+|.+.|.+.- -+|-..+... ...-..|.. +.+ ... ....... .
T Consensus 15 ~~~lianrGeia~riiraa~elGi~vv-av~s~~d~~a------~~~~~ADe~---~~i--~~~~~~~~~~~~~~~yld~ 82 (1165)
T 2qf7_A 15 SKILVANRSEIAIRVFRAANELGIKTV-AIWAEEDKLA------LHRFKADES---YQV--GRGPHLARDLGPIESYLSI 82 (1165)
T ss_dssp CEEEECCCHHHHHHHHHHHHHTTCEEE-EEECGGGTTC------HHHHSSSSE---EEC--SCSTTSSSCCCTTHHHHCH
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEE-EEECCCcccc------hhHHhCCEE---EEc--CCcccccccCCccccccCH
Confidence 456788999899999999999998520 0111111110 111122321 121 111 1111222 4
Q ss_pred HHHHHHHHhcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHH
Q psy7785 375 KGLVNACKSFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKR 452 (525)
Q Consensus 375 ~~i~~a~~~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~ 452 (525)
+.|.+++++. +.-.++...|. ......+.+++.|+|++ ....+++..+. +-..+++
T Consensus 83 ~~I~~~a~~~--~iD~V~pg~g~lsE~~~~a~~le~~Gi~~i--Gp~~~ai~~~~------------------DK~~~k~ 140 (1165)
T 2qf7_A 83 DEVIRVAKLS--GADAIHPGYGLLSESPEFVDACNKAGIIFI--GPKADTMRQLG------------------NKVAARN 140 (1165)
T ss_dssp HHHHHHHHHH--TCSEEECCSSTTTTCHHHHHHHHHTTCEES--SCCHHHHHHHH------------------SHHHHHH
T ss_pred HHHHHHHHHh--CCCEEEECCCchhcCHHHHHHHHHcCCceE--CCCHHHHHHHC------------------CHHHHHH
Confidence 5666766652 22233322231 12334567888999987 44444554442 2346899
Q ss_pred HHHHCCCCe---E--EEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhh
Q psy7785 453 ILDESKLPL---I--FASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILD 503 (525)
Q Consensus 453 LL~ayGIpv---~--lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~ 503 (525)
+|+++|||+ . .+.+.+++.+ .++++ |||||+|-.+..-.+|-+++.
T Consensus 141 ~l~~~GIPvp~~~~~~v~s~eea~~---~a~~i--gyPvVVKp~~g~GG~Gv~iv~ 191 (1165)
T 2qf7_A 141 LAISVGVPVVPATEPLPDDMAEVAK---MAAAI--GYPVMLKASWGGGGRGMRVIR 191 (1165)
T ss_dssp HHHHTTCCBC----------------------------------------------
T ss_pred HHHHcCCCCCCeeCcCCCCHHHHHH---HHHhc--CCCEEEEeCCCCCCCCEEEEC
Confidence 999999999 3 5778888877 45564 999999998776666655554
No 116
>1uc8_A LYSX, lysine biosynthesis enzyme; alpha-aminoadipate pathway, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.30.1.6 d.142.1.7 PDB: 1uc9_A*
Probab=93.36 E-value=0.18 Score=48.60 Aligned_cols=76 Identities=17% Similarity=0.211 Sum_probs=53.8
Q ss_pred HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS 479 (525)
Q Consensus 403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~ 479 (525)
...++..|+|++ .+++ ++.... +-...+++|+++|||+ ..+.+.+++.+ .+++
T Consensus 66 ~~~l~~~g~~~~--~~~~-~~~~~~------------------dK~~~~~~l~~~gi~~p~~~~~~~~~~~~~---~~~~ 121 (280)
T 1uc8_A 66 ARYLTALGIPVV--NRPE-VIEACG------------------DKWATSVALAKAGLPQPKTALATDREEALR---LMEA 121 (280)
T ss_dssp HHHHHHTTCCEE--SCHH-HHHHHH------------------BHHHHHHHHHHTTCCCCCEEEESSHHHHHH---HHHH
T ss_pred HHHHHHCCCcee--CCHH-HHHHhC------------------CHHHHHHHHHHcCcCCCCeEeeCCHHHHHH---HHHH
Confidence 346677899988 6643 333221 1235789999999999 77888888776 3455
Q ss_pred cCCCCcEEEEEecCChHHHHHhhhh
Q psy7785 480 FKLSIPLVVRLEGTNVQEGKRILDE 504 (525)
Q Consensus 480 ~~~G~PVVlKi~~~~~~~~~~~~~~ 504 (525)
+ |||+|+|-....-..|..+++.
T Consensus 122 ~--~~p~vvKp~~g~~~~gv~~v~~ 144 (280)
T 1uc8_A 122 F--GYPVVLKPVIGSWGRLLAXXXX 144 (280)
T ss_dssp H--CSSEEEECSBCCBCSHHHHHHH
T ss_pred h--CCCEEEEECCCCCcccceeccc
Confidence 4 9999999987776667666653
No 117
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=93.20 E-value=0.23 Score=52.11 Aligned_cols=67 Identities=25% Similarity=0.241 Sum_probs=47.4
Q ss_pred HHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhh
Q psy7785 402 GKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACK 478 (525)
Q Consensus 402 ~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~ 478 (525)
..+.+++.|+|++ ....+++.... +-...+++|+++|||+ ..+.+.+++.+ .++
T Consensus 104 ~~~~l~~~gi~~~--g~~~~~~~~~~------------------dK~~~k~~l~~~gip~p~~~~~~~~~~~~~---~~~ 160 (452)
T 2qk4_A 104 IVGNLRSAGVQCF--GPTAEAAQLES------------------SKRFAKEFMDRHGIPTAQWKAFTKPEEACS---FIL 160 (452)
T ss_dssp HHHHHHHTTCCEE--SCCTTTTHHHH------------------BHHHHHHHHHHTTCCBCCEEEESSHHHHHH---HHH
T ss_pred HHHHHHhcCCcEe--CcCHHHHHHhc------------------CHHHHHHHHHHCCCCCCCeEEECCHHHHHH---HHH
Confidence 3567788899987 33222332221 1236889999999999 67889998877 455
Q ss_pred hcCCCCc-EEEEEecC
Q psy7785 479 SFKLSIP-LVVRLEGT 493 (525)
Q Consensus 479 ~~~~G~P-VVlKi~~~ 493 (525)
++ ||| ||+|-.+.
T Consensus 161 ~~--g~P~vvvKp~~~ 174 (452)
T 2qk4_A 161 SA--DFPALVVKASGL 174 (452)
T ss_dssp HC--SSCEEEEEESBC
T ss_pred hC--CCCeEEEEeCCC
Confidence 64 999 99999765
No 118
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=93.20 E-value=0.16 Score=52.70 Aligned_cols=66 Identities=20% Similarity=0.307 Sum_probs=46.6
Q ss_pred HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS 479 (525)
Q Consensus 403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~ 479 (525)
.+.+++.|+|++ ....+++.... +-...+++|+++|||+ ..+.+.+++.+ .+++
T Consensus 79 ~~~l~~~gi~~~--g~~~~~~~~~~------------------dK~~~k~~l~~~gip~p~~~~~~~~~~~~~---~~~~ 135 (424)
T 2yw2_A 79 VDEFEKRGLKIF--GPNKEAAKLEG------------------SKAFAKTFMKKYGIPTARYEVFTDFEKAKE---YVEK 135 (424)
T ss_dssp HHHHHHTTCCEE--SCCTTTTHHHH------------------CHHHHHHHHHHTTCCBCCEEEESCHHHHHH---HHHH
T ss_pred HHHHHHCCCcEE--CcCHHHHHHHh------------------CHHHHHHHHHHcCCCCCCeEEECCHHHHHH---HHHH
Confidence 456778899987 32222332221 2336889999999999 67889998877 3556
Q ss_pred cCCCCcEEEEEecC
Q psy7785 480 FKLSIPLVVRLEGT 493 (525)
Q Consensus 480 ~~~G~PVVlKi~~~ 493 (525)
+ |||||+|-.+.
T Consensus 136 ~--~~PvvvKp~~g 147 (424)
T 2yw2_A 136 V--GAPIVVKADGL 147 (424)
T ss_dssp H--CSSEEEEESSC
T ss_pred c--CCcEEEEeCCC
Confidence 4 99999998765
No 119
>3df7_A Putative ATP-grAsp superfamily protein; putative protein, PSI-II, nysgrc., structural genomics, protein structure initiative; 1.87A {Archaeoglobus fulgidus}
Probab=93.06 E-value=0.1 Score=52.13 Aligned_cols=59 Identities=12% Similarity=0.271 Sum_probs=41.5
Q ss_pred hCCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeCCcccHHHHHHHHhccccccccC
Q psy7785 19 VSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQT 98 (525)
Q Consensus 19 ~~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~~~eea~~a~~~l~~~~~~~~~~ 98 (525)
+ |||+|++.+ .+++| |+|+|+..-.+| + ||.+..+ .
T Consensus 120 ~-Gip~p~~~~-----------~~~~~-P~vvKP~~g~gs--~---------Gv~~v~~---------------~----- 155 (305)
T 3df7_A 120 G-EVQVPQTSL-----------RPLDC-KFIIKPRTACAG--E---------GIGFSDE---------------V----- 155 (305)
T ss_dssp T-TSCCCCEES-----------SCCSS-SEEEEESSCC---------------CBCCSS---------------C-----
T ss_pred h-CCCCCCEec-----------ccCCC-CEEEEeCCCCCC--C---------CEEEEec---------------C-----
Confidence 7 999999875 25786 999999643332 2 4544444 1
Q ss_pred CCCCcccCeEEEEeeeCCceeEEEEEEEcC
Q psy7785 99 PKTGINVNKVMVAKSVNITRETYFCIVQDR 128 (525)
Q Consensus 99 ~~~g~~~~~vlVee~~~~~~E~~vgv~~D~ 128 (525)
...++||+|++ +.|+.+.+..+.
T Consensus 156 ------~~~~lvEe~I~-G~e~sv~v~~g~ 178 (305)
T 3df7_A 156 ------PDGHIAQEFIE-GINLSVSLAVGE 178 (305)
T ss_dssp ------CTTEEEEECCC-SEEEEEEEEESS
T ss_pred ------CCCEEEEeccC-CcEEEEEEEeCC
Confidence 13589999999 799999998754
No 120
>3eth_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; ATP-grAsp, purine biosynthesis, antimicrobial, ATP-binding, decarboxylase, lyase; HET: ATP; 1.60A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1b6r_A* 3etj_A* 1b6s_A*
Probab=92.40 E-value=0.2 Score=51.30 Aligned_cols=118 Identities=13% Similarity=0.056 Sum_probs=73.8
Q ss_pred cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHH
Q psy7785 303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACK 382 (525)
Q Consensus 303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~ 382 (525)
+|+|+. ||=+|-|.+-++...|.++ +|...++... .+. + ++|+|.
T Consensus 3 ~igilG-gGqlg~m~~~aa~~lG~~v---~~~~~~a~~~----~~~--l---~~d~it---------------------- 47 (355)
T 3eth_A 3 QVCVLG-NGQLGRMLRQAGEPLGIAV---WPVGLDAEPA----AVP--F---QQSVIT---------------------- 47 (355)
T ss_dssp EEEEES-CSHHHHHHHHHHGGGTCEE---EEECTTCCGG----GCC--C---TTSEEE----------------------
T ss_pred EEEEEC-CCHHHHHHHHHHHHCCCEE---ECCCCCCCce----EEc--c---cCCEEE----------------------
Confidence 477764 5568999999999999987 6665543320 000 0 233222
Q ss_pred hcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe-
Q psy7785 383 SFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL- 461 (525)
Q Consensus 383 ~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv- 461 (525)
.-.+.-..+..+.+.+.| +++ ++++. +.... +-...|++|+++|||+
T Consensus 48 ----------~e~e~v~~~~l~~l~~~~-~v~--p~~~a-~~~~~------------------DK~~~k~~l~~~GIptp 95 (355)
T 3eth_A 48 ----------AEIERWPETALTRQLARH-PAF--VNRDV-FPIIA------------------DRLTQKQLFDKLHLPTA 95 (355)
T ss_dssp ----------ESCSCCCCCHHHHHHHTC-TTB--TTTTH-HHHHH------------------SHHHHHHHHHHTTCCBC
T ss_pred ----------ECcCCcCHHHHHHHHhcC-CcC--CCHHH-HHHhc------------------CHHHHHHHHHHCccCCC
Confidence 111111123455666666 666 55432 22221 1235799999999999
Q ss_pred --EEEcChhHHHHHHHHhhhcCCCCcEEEEEec
Q psy7785 462 --IFASDLDEAASLVNACKSFKLSIPLVVRLEG 492 (525)
Q Consensus 462 --~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~ 492 (525)
..+.+.+++.+ +++++ |||+|+|-..
T Consensus 96 ~~~~v~~~~e~~~---~~~~~--G~P~VvKp~~ 123 (355)
T 3eth_A 96 PWQLLAERSEWPA---VFDRL--GELAIVKRRT 123 (355)
T ss_dssp CEEEECCGGGHHH---HHHHH--CSEEEEEESS
T ss_pred CEEEECCHHHHHH---HHHHc--CCCEEEEecC
Confidence 78899999887 45564 9999999974
No 121
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=92.20 E-value=0.23 Score=50.97 Aligned_cols=145 Identities=14% Similarity=0.118 Sum_probs=78.4
Q ss_pred CcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHH
Q psy7785 302 GNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNAC 381 (525)
Q Consensus 302 ~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~ 381 (525)
.+|.|+ ++|+.+...+-++.+.|..+-= +|..+ .....+ + ..| -.+. . ...+. +.+.+++
T Consensus 8 ~~ilI~-g~g~~~~~~~~a~~~~G~~~v~-v~~~~-~~~~~~----~--~ad----~~~~-~--~~~d~----~~l~~~~ 67 (403)
T 4dim_A 8 KRLLIL-GAGRGQLGLYKAAKELGIHTIA-GTMPN-AHKPCL----N--LAD----EISY-M--DISNP----DEVEQKV 67 (403)
T ss_dssp CEEEEE-CCCGGGHHHHHHHHHHTCEEEE-EECSS-CCHHHH----H--HCS----EEEE-C--CTTCH----HHHHHHT
T ss_pred CEEEEE-CCcHhHHHHHHHHHHCCCEEEE-EcCCC-CCCcch----h--hCC----eEEE-e--cCCCH----HHHHHHH
Confidence 466555 5555677888999999985311 12211 111111 1 122 2221 1 11222 4566666
Q ss_pred HhcCCCCcEEEEeCCc--chHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCC
Q psy7785 382 KSFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKL 459 (525)
Q Consensus 382 ~~~~~~kPivv~~~g~--~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGI 459 (525)
++ .+.-.++.. |. ......+..++.|+| . .+++ ++..+. +-...+++|+++||
T Consensus 68 ~~--~~~d~v~~~-~~~~~~~~~a~~~~~~gl~-g--~~~~-~~~~~~------------------dK~~~~~~l~~~gi 122 (403)
T 4dim_A 68 KD--LNLDGAATC-CLDTGIVSLARICDKENLV-G--LNEE-AAIMCG------------------DKYKMKEAFKKYNV 122 (403)
T ss_dssp TT--SCCSEEECC-SCSTTHHHHHHHHHHHTCS-S--CCHH-HHHHHH------------------CHHHHHHHHHHHTC
T ss_pred HH--cCCCEEEeC-CcchhHHHHHHHHHHcCcC-C--CCHH-HHHHHh------------------CHHHHHHHHHHcCC
Confidence 55 222233322 32 222334455677885 3 4543 333221 23368899999999
Q ss_pred Ce---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChH
Q psy7785 460 PL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQ 496 (525)
Q Consensus 460 pv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~ 496 (525)
|+ ..+.+.+++.+ .++++ |||+|+|-....-.
T Consensus 123 p~p~~~~~~~~~~~~~---~~~~~--g~P~vvKp~~g~gg 157 (403)
T 4dim_A 123 NTARHFVVRNENELKN---ALENL--KLPVIVKATDLQGS 157 (403)
T ss_dssp CCCCEECCCSHHHHHH---HHHTS--CSSEEEECSCC---
T ss_pred CCCCEEEeCCHHHHHH---HHhcC--CCCEEEEECCCCCC
Confidence 99 67788888887 45664 99999998765433
No 122
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=92.07 E-value=0.19 Score=51.66 Aligned_cols=67 Identities=7% Similarity=0.041 Sum_probs=45.0
Q ss_pred HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhH----HHHHHH
Q psy7785 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDE----AASLVN 475 (525)
Q Consensus 403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~de----Av~~~~ 475 (525)
...|+..|+|++ .+...++.... +-...+++|+++|||+ .++.+.++ +.+
T Consensus 112 ~~lle~~gip~~--G~~~~a~~~~~------------------DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~--- 168 (377)
T 1ehi_A 112 QGLFKLLDKPYV--GAPLRGHAVSF------------------DKALTKELLTVNGIRNTKYIVVDPESANNWSWDK--- 168 (377)
T ss_dssp HHHHHHTTCCBS--SCCHHHHHHHH------------------SHHHHHHHHHTTTCCCCCEEEECTTGGGGCCHHH---
T ss_pred HHHHHHcCCCEe--CcCHHHHHHHc------------------CHHHHHHHHHHcCCCCCCEEEEeccccchHHHHH---
Confidence 456788999987 44444443322 2346899999999999 56666554 433
Q ss_pred HhhhcCCCCcEEEEEecCC
Q psy7785 476 ACKSFKLSIPLVVRLEGTN 494 (525)
Q Consensus 476 aa~~~~~G~PVVlKi~~~~ 494 (525)
.++++ |||||+|-....
T Consensus 169 ~~~~~--g~PvvVKP~~~~ 185 (377)
T 1ehi_A 169 IVAEL--GNIVFVKAANQG 185 (377)
T ss_dssp HHHHH--CSCEEEEESSCC
T ss_pred HHHhc--CCCEEEEeCCCC
Confidence 34454 999999987654
No 123
>2pvp_A D-alanine-D-alanine ligase; 2.40A {Helicobacter pylori}
Probab=91.75 E-value=0.23 Score=50.98 Aligned_cols=70 Identities=16% Similarity=0.221 Sum_probs=47.0
Q ss_pred HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChh--HHHHHHHHh
Q psy7785 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLD--EAASLVNAC 477 (525)
Q Consensus 403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~d--eAv~~~~aa 477 (525)
...|+..|+|++ .+...++.... +-...+++|+++|||+ ..+.+.+ ++.+ +
T Consensus 126 ~~~le~~gip~~--G~~~~a~~~~~------------------DK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~----~ 181 (367)
T 2pvp_A 126 ASLLEFYRIAFI--GPRIEASVLSY------------------NKYLTKLYAKDLGIKTLDYVLLNEKNRANALD----L 181 (367)
T ss_dssp HHHHHHTTCCEE--SCCHHHHHHHH------------------SHHHHHHHHHHHTCBCCCCEEECTTTGGGHHH----H
T ss_pred HHHHHHcCCCcc--CCCHHHHHHHc------------------CHHHHHHHHHHCCcCCCCEEEEeCCchHHHHH----H
Confidence 456788899987 44333333322 1236899999999999 6666666 5543 3
Q ss_pred hhcCCCCcEEEEEecCChHHH
Q psy7785 478 KSFKLSIPLVVRLEGTNVQEG 498 (525)
Q Consensus 478 ~~~~~G~PVVlKi~~~~~~~~ 498 (525)
++ .|||||+|-....-..|
T Consensus 182 ~~--lg~PvvVKP~~g~ss~G 200 (367)
T 2pvp_A 182 MN--FNFPFIVKPSNAGSSLG 200 (367)
T ss_dssp CC--SCSCEEEEESSCCTTTT
T ss_pred hc--cCCCEEEEECCCCCCCC
Confidence 45 39999999877654444
No 124
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A
Probab=91.70 E-value=0.51 Score=51.02 Aligned_cols=152 Identities=15% Similarity=0.130 Sum_probs=82.7
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCCC------------CCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccccc
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGGEP------------ANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIV 368 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~------------aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~ 368 (525)
-.+|.|+ ++|..++..+.++.+.|..+ ..+.|....+ ...+ .. |-.+. ++.+.
T Consensus 47 ~kkILI~-g~g~~a~~iira~~~~G~~vi~~d~gi~~v~v~s~~D~~~~~------~~~~--~a----D~~~~-ip~~~- 111 (554)
T 1w96_A 47 ISKILIA-NNGIAAVKEIRSVRKWAYETFGDDRTVQFVAMATPEDLEANA------EYIR--MA----DQYIE-VPGGT- 111 (554)
T ss_dssp CCEEEEC-CCHHHHHHHHHHHHHHHHHHHSCTTSSEEEEEECHHHHHTTC------HHHH--HS----SEEEE-CCCSS-
T ss_pred ccEEEEE-CCCHHHHHHHHHHHHcCCcceecccCceEEEEecccccccCC------hhhh--hC----CEEEE-cCCCC-
Confidence 3466665 77888888999999887542 1111211111 1111 12 22222 22211
Q ss_pred ChHHH--HHHHHHHHHhcCCCCcEEEEeCCc--chHHHHHHHhhCC--CCccccCCHHHHHHHHHHhhcccCCCCeEEEe
Q psy7785 369 NCATI--AKGLVNACKSFKLSIPLVVRLEGT--NVQEGKRILDESK--LPLIFASDLDEAASLVNACKSFKLSIPLVVRL 442 (525)
Q Consensus 369 ~~~~i--a~~i~~a~~~~~~~kPivv~~~g~--~~~~~~~~L~~~G--vpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l 442 (525)
+.... .+.|.+++++ .+.-.++...|. ........+++.| ++++ ....+++..+
T Consensus 112 ~~~~y~d~~~l~~~a~~--~~id~Vi~g~G~~sE~~~~~~~l~~~g~~i~~~--gp~~~a~~~~---------------- 171 (554)
T 1w96_A 112 NNNNYANVDLIVDIAER--ADVDAVWAGWGHASENPLLPEKLSQSKRKVIFI--GPPGNAMRSL---------------- 171 (554)
T ss_dssp GGGTTTCHHHHHHHHHH--TTCSEEECCSSTTTTCTHHHHHHHHSTTCCEES--SCCHHHHHHS----------------
T ss_pred ccccccCHHHHHHHHHH--hCCCEEEECCCccccCHHHHHHHHHcCCeEEEe--CCCHHHHHHH----------------
Confidence 11111 3566777766 333344332232 1122334678888 8877 4333333322
Q ss_pred CCCCHHHHHHHHHHCCCCe---EE--------------------------EcChhHHHHHHHHhhhcCCCCcEEEEEecC
Q psy7785 443 EGTNVQEGKRILDESKLPL---IF--------------------------ASDLDEAASLVNACKSFKLSIPLVVRLEGT 493 (525)
Q Consensus 443 ~g~~e~eak~LL~ayGIpv---~l--------------------------A~s~deAv~~~~aa~~~~~G~PVVlKi~~~ 493 (525)
.+-..++++|+++|||+ .. +.+.+++.+ .++++ |||||+|-.+.
T Consensus 172 --~dK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~~l~~ip~~~~~~~~~~~~~e~~~---~~~~~--g~PvVvKp~~g 244 (554)
T 1w96_A 172 --GDKISSTIVAQSAKVPCIPWSGTGVDTVHVDEKTGLVSVDDDIYQKGCCTSPEDGLQ---KAKRI--GFPVMIKASEG 244 (554)
T ss_dssp --CSHHHHHHHHHHTTCCBCCBTTTTCCCCEECTTTCCEECCHHHHGGGSCSSHHHHHH---HHHHH--CSSEEEEETTC
T ss_pred --hCHHHHHHHHHHCCCCcCCccccccccccccccccccccccccccccCCCCHHHHHH---HHHHc--CCCEEEEECCC
Confidence 23456899999999998 21 367788876 45564 99999998765
Q ss_pred C
Q psy7785 494 N 494 (525)
Q Consensus 494 ~ 494 (525)
.
T Consensus 245 ~ 245 (554)
T 1w96_A 245 G 245 (554)
T ss_dssp C
T ss_pred C
Confidence 4
No 125
>3lwb_A D-alanine--D-alanine ligase; DDL, D-alanyl--D-alanine ligase RV2981C, structural genomics, TB structural GENO consortium, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=90.91 E-value=0.15 Score=52.46 Aligned_cols=70 Identities=16% Similarity=0.282 Sum_probs=44.7
Q ss_pred HHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHH--HHHHHHhh
Q psy7785 404 RILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEA--ASLVNACK 478 (525)
Q Consensus 404 ~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deA--v~~~~aa~ 478 (525)
..|+..|+|++ .+...++.... +-...|++|+++|||+ ..+.+.+++ .. .++
T Consensus 129 ~lle~~gip~v--G~~~~a~~~~~------------------DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~---~~~ 185 (373)
T 3lwb_A 129 GLLELAGVPYV--GAGVLASAVGM------------------DKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQ---ECE 185 (373)
T ss_dssp HHHHHHTCCBS--SSCHHHHHHHH------------------BHHHHHHHHHHTTCCBCCEEEECTTCCCCCHH---HHH
T ss_pred HHHHHcCCCcc--CCcHHHHHHHc------------------CHHHHHHHHHHcCcCCCCEEEEECcccchhHH---HHH
Confidence 45677899988 54333333221 1236899999999999 566665541 22 244
Q ss_pred hcCCCCcEEEEEecCChHHH
Q psy7785 479 SFKLSIPLVVRLEGTNVQEG 498 (525)
Q Consensus 479 ~~~~G~PVVlKi~~~~~~~~ 498 (525)
++ |||||+|-....-..|
T Consensus 186 ~l--g~PvvVKP~~ggss~G 203 (373)
T 3lwb_A 186 RL--GLPVFVKPARGGSSIG 203 (373)
T ss_dssp HH--CSCEEEEESBCSTTTT
T ss_pred hc--CCCEEEEeCCCCCCCC
Confidence 54 9999999876554444
No 126
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=90.84 E-value=0.63 Score=48.19 Aligned_cols=44 Identities=25% Similarity=0.319 Sum_probs=30.7
Q ss_pred HHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHH
Q psy7785 448 QEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEG 498 (525)
Q Consensus 448 ~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~ 498 (525)
...+++|+++|||+ ..+.+.+++.+ .+ .|||+|+|-....-.+|
T Consensus 114 ~~~k~~l~~~gip~p~~~~~~~~~~~~~-----~~--~g~P~vvKp~~g~gs~G 160 (425)
T 3vot_A 114 NKTRSILQQNGLNTPVFHEFHTLADLEN-----RK--LSYPLVVKPVNGFSSQG 160 (425)
T ss_dssp HHHHHHHHHTTCCCCCEEEESSGGGGTT-----CC--CCSSEEEEESCC-----
T ss_pred HHHHHHHHHCCCCCCceeccCcHHHHHH-----hh--cCCcEEEEECCCCCCCC
Confidence 36899999999999 77888887642 34 49999999765443333
No 127
>1vkz_A Phosphoribosylamine--glycine ligase; TM1250, structural GENO JCSG, protein structure initiative, PSI, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=90.76 E-value=0.12 Score=53.75 Aligned_cols=43 Identities=23% Similarity=0.309 Sum_probs=35.1
Q ss_pred HHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785 447 VQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN 494 (525)
Q Consensus 447 e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~ 494 (525)
-...+++|+++|||+ ..+.+.+++.+ .++++ |||||+|-.+..
T Consensus 107 K~~~k~~l~~~gip~p~~~~~~~~~e~~~---~~~~~--g~PvvvKp~~~~ 152 (412)
T 1vkz_A 107 KVYAKRFMKKYGIRTARFEVAETPEELRE---KIKKF--SPPYVIKADGLA 152 (412)
T ss_dssp HHHHHHHHHHTTCCCCCEEEESSHHHHHH---HHTTS--CSSEEEEESSCC
T ss_pred HHHHHHHHHHcCCCCCCEEEECCHHHHHH---HHHhc--CCCEEEEeCCCC
Confidence 346899999999999 67899999887 45564 999999987653
No 128
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=90.68 E-value=0.12 Score=58.36 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=38.4
Q ss_pred HHHHHHHHCCCCe---EEEcChhHHHHHHHHh-hhcCCCCcEEEEEecCChHHHHHhh
Q psy7785 449 EGKRILDESKLPL---IFASDLDEAASLVNAC-KSFKLSIPLVVRLEGTNVQEGKRIL 502 (525)
Q Consensus 449 eak~LL~ayGIpv---~lA~s~deAv~~~~aa-~~~~~G~PVVlKi~~~~~~~~~~~~ 502 (525)
.+|++|+++|||+ ..+.+.+++.+ .+ +. .|||||+|-.+.+-.+|-.+.
T Consensus 492 ~tk~lL~~~GIPvP~~~~~~~~~ea~~---~~~~~--~g~PvVVKP~~g~~G~GV~iv 544 (757)
T 3ln7_A 492 VTKKVLQKAGFNVPQSVEFTSLEKAVA---SYALF--ENRAVVIKPKSTNYGLGITIF 544 (757)
T ss_dssp HHHHHHHHHTCCCCCEEEESCHHHHHH---GGGGS--SSSCEEEEESSCSTTTTCEEC
T ss_pred HHHHHHHHCCcCCCCEEEECCHHHHHH---HHHHh--cCCCEEEEeCCCCCCCCeEEe
Confidence 4899999999999 77889998876 34 55 499999999887665554443
No 129
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=90.55 E-value=0.11 Score=52.53 Aligned_cols=66 Identities=11% Similarity=0.144 Sum_probs=43.9
Q ss_pred HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS 479 (525)
Q Consensus 403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~ 479 (525)
...|+..|+|++ .+...++.... +-...+++|+++|||+ .++.+.++ . .+.+
T Consensus 109 q~~le~~gip~~--g~~~~a~~~~~------------------dK~~~k~~l~~~Gip~p~~~~~~~~~~--~---~~~~ 163 (346)
T 3se7_A 109 QGLLELSGIPYV--GCDIQSSALCM------------------DKSLTYLVARSAGIATPNFWTVTADEK--I---PTDQ 163 (346)
T ss_dssp HHHHHHHCCCBS--SCCHHHHHHHH------------------SHHHHHHHHHHTTCBCCCEEEEETTSC--C---CTTT
T ss_pred HHHHHHcCCCee--CcCHHHHHHHh------------------CHHHHHHHHHHcCcCcCCEEEEcCcHH--H---HHHh
Confidence 357778899988 54334333321 2346899999999999 55666551 1 2445
Q ss_pred cCCCCcEEEEEecCCh
Q psy7785 480 FKLSIPLVVRLEGTNV 495 (525)
Q Consensus 480 ~~~G~PVVlKi~~~~~ 495 (525)
.|||||+|-....-
T Consensus 164 --lg~PvvvKP~~~~~ 177 (346)
T 3se7_A 164 --LTYPVFVKPARSGS 177 (346)
T ss_dssp --CCSSEEEEESSCCT
T ss_pred --cCCCEEEEeCCCCC
Confidence 49999999876653
No 130
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=90.30 E-value=0.22 Score=51.02 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=34.4
Q ss_pred HHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785 448 QEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN 494 (525)
Q Consensus 448 ~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~ 494 (525)
...+++|+++|||+ ..+.+.+++.+ +++++ |||+|+|-....
T Consensus 112 ~~~k~~l~~~Gip~p~~~~~~~~~~~~~---~~~~~--g~P~vvKp~~gg 156 (377)
T 3orq_A 112 LTEKETLKSAGTKVVPFISVKESTDIDK---AIETL--GYPFIVKTRFGG 156 (377)
T ss_dssp HHHHHHHHHTTCCBCCEEEECSSTHHHH---HHHHT--CSSEEEEESSSC
T ss_pred HHHHHHHHHCCCCCCCeEEECCHHHHHH---HHHHc--CCCEEEEeCCCC
Confidence 36789999999999 77888888877 45564 999999997543
No 131
>3aw8_A PURK, phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp; HET: AMP; 2.60A {Thermus thermophilus}
Probab=90.22 E-value=0.32 Score=49.37 Aligned_cols=43 Identities=9% Similarity=0.151 Sum_probs=35.4
Q ss_pred HHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC
Q psy7785 447 VQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN 494 (525)
Q Consensus 447 e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~ 494 (525)
-...+++|+++|||+ ..+.+.+++.+ .++++ |||+|+|-.+..
T Consensus 97 K~~~k~~l~~~gip~p~~~~~~~~~~~~~---~~~~~--g~P~vvKp~~~~ 142 (369)
T 3aw8_A 97 RLREKTFFQGLGVPTPPFHPVDGPEDLEE---GLKRV--GLPALLKTRRGG 142 (369)
T ss_dssp HHHHHHHHHHHTCCCCCEEEESSHHHHHH---HHTTT--CSSEEEEECCC-
T ss_pred HHHHHHHHHHCCCCCCCceeeCCHHHHHH---HHHHc--CCCEEEEEcCCC
Confidence 457899999999999 77889998877 45564 999999998765
No 132
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=90.06 E-value=0.32 Score=50.04 Aligned_cols=72 Identities=14% Similarity=0.187 Sum_probs=43.5
Q ss_pred HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHH---HHHHHH
Q psy7785 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEA---ASLVNA 476 (525)
Q Consensus 403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deA---v~~~~a 476 (525)
...|+..|+|+. .+...++.... +-...|++|+++|||+ ..+.+.+++ .. +.
T Consensus 117 q~lle~~gipy~--G~~~~a~~~~~------------------DK~~~k~~l~~~GIp~p~~~~~~~~~~~~~~~~--~~ 174 (372)
T 3tqt_A 117 QGLLELLNLPYV--GANVQSSAVCM------------------EKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQ--RL 174 (372)
T ss_dssp HHHHHHTTCCBS--SCCHHHHHHHH------------------SHHHHHHHHHHTTCCBCCCEEECTTSCCTTHHH--HH
T ss_pred HHHHHHcCCCee--CcCHHHHHHHh------------------CHHHHHHHHHHCCcCCCCEEEEechhhhhhHHH--HH
Confidence 357788999987 54433333321 1236899999999999 666666541 21 13
Q ss_pred hhhcCCCCc-EEEEEecCChHHH
Q psy7785 477 CKSFKLSIP-LVVRLEGTNVQEG 498 (525)
Q Consensus 477 a~~~~~G~P-VVlKi~~~~~~~~ 498 (525)
++++ ||| ||+|-....-..|
T Consensus 175 ~~~l--g~P~vvVKP~~ggss~G 195 (372)
T 3tqt_A 175 LDRW--GTSELFVKAVSLGSSVA 195 (372)
T ss_dssp HHHC-----CEEEEESSCCSGGG
T ss_pred HHhc--CCCeEEEEECCCCCCCC
Confidence 4564 999 9999876554433
No 133
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=89.92 E-value=0.095 Score=59.02 Aligned_cols=46 Identities=33% Similarity=0.371 Sum_probs=36.2
Q ss_pred HHHHHHHHHCCCCe---EEEcChhHHHHHHHHh-hhcCCCCcEEEEEecCChHHH
Q psy7785 448 QEGKRILDESKLPL---IFASDLDEAASLVNAC-KSFKLSIPLVVRLEGTNVQEG 498 (525)
Q Consensus 448 ~eak~LL~ayGIpv---~lA~s~deAv~~~~aa-~~~~~G~PVVlKi~~~~~~~~ 498 (525)
..+|++|+++|||+ .++.+.+++.+. + +. .|||||+|-.+.+-.+|
T Consensus 486 ~~tk~lL~~~GIPvP~~~~~~~~~ea~~~---~~~~--~g~PvVVKP~~G~~G~G 535 (750)
T 3ln6_A 486 VVTKKILDEKHFPTPFGDEFTDRKEALNY---FSQI--QDKPIVVKPKSTNFGLG 535 (750)
T ss_dssp HHHHHHHHHTTCCCCCCCCEETTTTHHHH---HHHS--SSSCEEEEETTCCSSSS
T ss_pred HHHHHHHHHCCcCCCCEEEECCHHHHHHH---HHHh--cCCcEEEEeCCCCCCCC
Confidence 46899999999999 778888888763 3 45 49999999977664443
No 134
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=89.86 E-value=0.72 Score=45.74 Aligned_cols=78 Identities=8% Similarity=0.035 Sum_probs=44.2
Q ss_pred HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe-EEEcChhHHHHHHHHhhhcC
Q psy7785 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL-IFASDLDEAASLVNACKSFK 481 (525)
Q Consensus 403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv-~lA~s~deAv~~~~aa~~~~ 481 (525)
.+.|...|+|++ ....+++.... +-...+++|+++|||+ ....+.+++.+... +++
T Consensus 91 ~~~l~~~g~~~~--~~~~~~~~~~~------------------dK~~~~~~l~~~gip~p~~~~~~~~~~~~~~-~~~-- 147 (331)
T 2pn1_A 91 TERFQAIGVTVI--VSPYAACELCF------------------DKYTMYEYCLRQGIAHARTYATMASFEEALA-AGE-- 147 (331)
T ss_dssp HHHHHTTTCEEC--CCCHHHHHHHH------------------BHHHHHHHHHHHTCCCCCEESSHHHHHHHHH-TTS--
T ss_pred HHHHHhCCcEEe--cCCHHHHHHhh------------------CHHHHHHHHHHcCCCCCcEEecHHHhhhhhh-ccc--
Confidence 456777899876 43333343332 1346889999999999 44446676655221 135
Q ss_pred CCCcEEEEEecCChHHHHHhhh
Q psy7785 482 LSIPLVVRLEGTNVQEGKRILD 503 (525)
Q Consensus 482 ~G~PVVlKi~~~~~~~~~~~~~ 503 (525)
.|||+|+|-....-..|-.++.
T Consensus 148 ~~~P~vvKp~~g~g~~gv~~v~ 169 (331)
T 2pn1_A 148 VQLPVFVKPRNGSASIEVRRVE 169 (331)
T ss_dssp SCSCEEEEESBC----------
T ss_pred CCCCEEEEeCCCCCCCCeEEeC
Confidence 3999999997766555554443
No 135
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=89.66 E-value=0.23 Score=48.89 Aligned_cols=67 Identities=15% Similarity=0.194 Sum_probs=43.8
Q ss_pred HHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhc
Q psy7785 404 RILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKSF 480 (525)
Q Consensus 404 ~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~ 480 (525)
..|+..|+|++ .....++.... +-...+++|+++|||+ .++.+.+++... .++++
T Consensus 75 ~~le~~gi~~~--g~~~~~~~~~~------------------dK~~~~~~l~~~Gip~p~~~~~~~~~~~~~~--~~~~~ 132 (307)
T 3r5x_A 75 GTLESLGIPYS--GSNMLSSGICM------------------DKNISKKILRYEGIETPDWIELTKMEDLNFD--ELDKL 132 (307)
T ss_dssp HHHHHHTCCBS--SSCHHHHHHHH------------------CHHHHHHHHHHTTCCCCCEEEEESSSCCCHH--HHHHH
T ss_pred HHHHHcCCCee--CcCHHHHHHHc------------------CHHHHHHHHHHCCCCCCCEEEEeChhhhhHH--HHHhc
Confidence 46778899988 55344443332 2346899999999999 666676655431 23453
Q ss_pred CCCCcEEEEEecCC
Q psy7785 481 KLSIPLVVRLEGTN 494 (525)
Q Consensus 481 ~~G~PVVlKi~~~~ 494 (525)
|||||+|-....
T Consensus 133 --~~P~vvKP~~~~ 144 (307)
T 3r5x_A 133 --GFPLVVKPNSGG 144 (307)
T ss_dssp --CSSEEEEECC--
T ss_pred --CCCEEEEeCCCC
Confidence 999999986543
No 136
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=89.65 E-value=1.5 Score=44.55 Aligned_cols=71 Identities=13% Similarity=0.226 Sum_probs=46.5
Q ss_pred HHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHH
Q psy7785 400 QEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNA 476 (525)
Q Consensus 400 ~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~a 476 (525)
....+.|++.|+|++ .+++.+. ... +-...+++|+++|||+ ..+.+.+++
T Consensus 75 ~~~~~~l~~~gi~~~--~~~~~~~-~~~------------------dK~~~~~~l~~~gip~p~~~~~~~~~~~------ 127 (380)
T 3ax6_A 75 VQTLKKLYNEGYKIH--PSPYTLE-IIQ------------------DKFVQKEFLKKNGIPVPEYKLVKDLESD------ 127 (380)
T ss_dssp HHHHHHHHHTTCEES--SCHHHHH-HHH------------------SHHHHHHHHHHTTCCCCCEEECSSHHHH------
T ss_pred HHHHHHHHHCCCeEC--CCHHHHH-Hhc------------------CHHHHHHHHHHcCCCCCCeEEeCCHHHH------
Confidence 344567888999987 6765322 211 1235789999999999 667787761
Q ss_pred hhhcCCCCcEEEEEecCC-hHHHH
Q psy7785 477 CKSFKLSIPLVVRLEGTN-VQEGK 499 (525)
Q Consensus 477 a~~~~~G~PVVlKi~~~~-~~~~~ 499 (525)
+++ .|||+|+|-.... -.+|-
T Consensus 128 ~~~--~~~P~vvKp~~~~y~g~Gv 149 (380)
T 3ax6_A 128 VRE--FGFPVVQKARKGGYDGRGV 149 (380)
T ss_dssp HHT--TCSSEEEEESCCC-----E
T ss_pred HHh--cCCCEEEEecCCCCCCCCe
Confidence 335 3999999998765 44443
No 137
>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A
Probab=88.34 E-value=4.4 Score=42.03 Aligned_cols=143 Identities=14% Similarity=0.079 Sum_probs=78.7
Q ss_pred eccCCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHH
Q psy7785 298 VGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGL 377 (525)
Q Consensus 298 ~~~~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i 377 (525)
..++.+|+|+ +||-.|.+.+-++.+.|.++. -+|-..+.. +.+ ..| -.++ ....+.+ .+
T Consensus 32 ~~~~~~IlIl-G~G~lg~~~~~aa~~lG~~v~-v~d~~~~~p------~~~--~ad----~~~~---~~~~d~~----~l 90 (419)
T 4e4t_A 32 ILPGAWLGMV-GGGQLGRMFCFAAQSMGYRVA-VLDPDPASP------AGA--VAD----RHLR---AAYDDEA----AL 90 (419)
T ss_dssp CCTTCEEEEE-CCSHHHHHHHHHHHHTTCEEE-EECSCTTCH------HHH--HSS----EEEC---CCTTCHH----HH
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHCCCEEE-EECCCCcCc------hhh--hCC----EEEE---CCcCCHH----HH
Confidence 4456789887 567789999999999998631 122211111 111 122 1221 2223333 33
Q ss_pred HHHHHhcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHC
Q psy7785 378 VNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDES 457 (525)
Q Consensus 378 ~~a~~~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ay 457 (525)
.+.++. .+ +++.-......+..+.+.+. .+++ ++++ ++... .+-...|++|+++
T Consensus 91 ~~~a~~--~D--~V~~~~e~~~~~~~~~l~~~-~~vg--p~~~-a~~~~------------------~dK~~~k~~l~~~ 144 (419)
T 4e4t_A 91 AELAGL--CE--AVSTEFENVPAASLDFLART-TFVA--PAGR-CVAVA------------------QDRIAEKRFIEAS 144 (419)
T ss_dssp HHHHHH--CS--EEEECCTTCCHHHHHHHHTT-SEES--SCHH-HHHHH------------------TCHHHHHHHHHHT
T ss_pred HHHHhc--CC--EEEEccCcCCHHHHHHHHcc-CCcC--CCHH-HHHHh------------------cCHHHHHHHHHHc
Confidence 444433 22 23321111223445666666 3444 5543 23222 1234689999999
Q ss_pred CCCe---EEEcChhHHHHHHHHhhhc--CCCCcEEEEEe
Q psy7785 458 KLPL---IFASDLDEAASLVNACKSF--KLSIPLVVRLE 491 (525)
Q Consensus 458 GIpv---~lA~s~deAv~~~~aa~~~--~~G~PVVlKi~ 491 (525)
|||+ ..+.+.+++.+ ++++. .. ||+|+|-.
T Consensus 145 Gip~p~~~~v~~~~e~~~---~~~~~~~~~-~P~VvKp~ 179 (419)
T 4e4t_A 145 GVPVAPHVVIESAAALAA---LDDAALDAV-LPGILKTA 179 (419)
T ss_dssp TCCBCCEEEECSHHHHHT---SCHHHHHTT-CSEEEEES
T ss_pred CcCCCCeEEECCHHHHHH---HHHhhcccc-CCEEEEec
Confidence 9999 77889888776 33330 02 99999997
No 138
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=88.14 E-value=0.84 Score=46.29 Aligned_cols=67 Identities=12% Similarity=0.142 Sum_probs=42.9
Q ss_pred HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChh-------HHHH
Q psy7785 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLD-------EAAS 472 (525)
Q Consensus 403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~d-------eAv~ 472 (525)
...++..|+|++ .+...++.... +-...+++|+++|||+ ..+.+.+ ++.+
T Consensus 106 ~~~le~~gip~~--g~~~~~~~~~~------------------dK~~~k~~l~~~Gip~p~~~~~~~~~~~~~~~~~~~~ 165 (364)
T 2i87_A 106 QGLFEVLDVPYV--GNGVLSAASSM------------------DKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKL 165 (364)
T ss_dssp HHHHHHHTCCBS--SCCHHHHHHHH------------------SHHHHHHHHHHHTCCCCCEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcc--CCCHHHHHHHc------------------CHHHHHHHHHHCCCCCCCEEEEechhhcccchhHHHH
Confidence 356777899987 54333333322 1236789999999998 5555554 2332
Q ss_pred HHHHhhhcCCCCcEEEEEecCC
Q psy7785 473 LVNACKSFKLSIPLVVRLEGTN 494 (525)
Q Consensus 473 ~~~aa~~~~~G~PVVlKi~~~~ 494 (525)
.++++ |||||+|-....
T Consensus 166 ---~~~~~--g~PvvvKP~~g~ 182 (364)
T 2i87_A 166 ---VNDKL--NYPVFVKPANLG 182 (364)
T ss_dssp ---HHHHC--CSSEEEEESSCS
T ss_pred ---HHHhc--CCCEEEEeCCCC
Confidence 34564 999999986554
No 139
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=87.98 E-value=0.46 Score=48.70 Aligned_cols=141 Identities=16% Similarity=0.110 Sum_probs=79.0
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHH
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNA 380 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a 380 (525)
+.+|+|+ .+|..|.+.+.++.+.|.++- -+|...+.... .-.|..++ ....+.+ .+.+.
T Consensus 14 ~k~IlIl-G~G~~g~~la~aa~~~G~~vi-~~d~~~~~~~~------------~~ad~~~~---~~~~d~~----~l~~~ 72 (389)
T 3q2o_A 14 GKTIGII-GGGQLGRMMALAAKEMGYKIA-VLDPTKNSPCA------------QVADIEIV---ASYDDLK----AIQHL 72 (389)
T ss_dssp TSEEEEE-CCSHHHHHHHHHHHHTTCEEE-EEESSTTCTTT------------TTCSEEEE---CCTTCHH----HHHHH
T ss_pred CCEEEEE-CCCHHHHHHHHHHHHcCCEEE-EEeCCCCCchH------------HhCCceEe---cCcCCHH----HHHHH
Confidence 5578876 466699999999999998531 11221111110 01122222 1122222 34444
Q ss_pred HHhcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCC
Q psy7785 381 CKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLP 460 (525)
Q Consensus 381 ~~~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIp 460 (525)
.+. .+ +++.-.........+.|.+.|+ +. .+++ ++... .+-...+++|+++|||
T Consensus 73 ~~~--~d--vI~~~~e~~~~~~~~~l~~~g~-~~--~~~~-~~~~~------------------~dK~~~k~~l~~~Gip 126 (389)
T 3q2o_A 73 AEI--SD--VVTYEFENIDYRCLQWLEKHAY-LP--QGSQ-LLSKT------------------QNRFTEKNAIEKAGLP 126 (389)
T ss_dssp HHT--CS--EEEESCCCCCHHHHHHHHHHSC-CT--TCSH-HHHHT------------------TSHHHHHHHHHHTTCC
T ss_pred HHh--CC--EeeeccccccHHHHHHHHhhCc-cC--CCHH-HHHHh------------------cCHHHHHHHHHHCCCC
Confidence 443 22 3322222223344566777776 33 3332 22211 1344689999999999
Q ss_pred e---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecC
Q psy7785 461 L---IFASDLDEAASLVNACKSFKLSIPLVVRLEGT 493 (525)
Q Consensus 461 v---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~ 493 (525)
+ ..+.+.+++.+ +++++ |||||+|-...
T Consensus 127 ~p~~~~~~~~~~~~~---~~~~~--g~P~vvKp~~~ 157 (389)
T 3q2o_A 127 VATYRLVQNQEQLTE---AIAEL--SYPSVLKTTTG 157 (389)
T ss_dssp CCCEEEESSHHHHHH---HHHHH--CSSEEEEESSC
T ss_pred CCCeEEECCHHHHHH---HHHhc--CCCEEEEeCCC
Confidence 9 78899999887 45564 99999998654
No 140
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=86.35 E-value=0.38 Score=48.64 Aligned_cols=51 Identities=25% Similarity=0.396 Sum_probs=21.6
Q ss_pred HHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCC-hHHHHHhhh
Q psy7785 447 VQEGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEGTN-VQEGKRILD 503 (525)
Q Consensus 447 e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~-~~~~~~~~~ 503 (525)
-...+++|+++|||+ ..++ .+++.+ .++++ |||+|+|-.+.. -.+|-.+++
T Consensus 93 K~~~~~~l~~~gip~p~~~~~~-~~~~~~---~~~~~--~~P~vvKp~~~~~~g~Gv~~v~ 147 (365)
T 2z04_A 93 RIREKLFLKKHGFPVPEFLVIK-RDEIID---ALKSF--KLPVVIKAEKLGYDGKGQYRIK 147 (365)
T ss_dssp HHHHHHHHHTTTCCCCCEEEC--------------------CEEEECC-------------
T ss_pred HHHHHHHHHHcCCCCCCEEEEc-HHHHHH---HHHhc--CCCEEEEEcCCCcCCCCeEEEC
Confidence 457899999999999 4555 667665 34553 999999998776 555554443
No 141
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=85.51 E-value=0.52 Score=47.39 Aligned_cols=69 Identities=9% Similarity=0.172 Sum_probs=45.1
Q ss_pred HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS 479 (525)
Q Consensus 403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~ 479 (525)
...++..|+|++ .+...++.... +-...+++|+++|||+ ..+.+.+++. +++
T Consensus 109 ~~~le~~gip~~--g~~~~~~~~~~------------------dK~~~k~~l~~~Gip~p~~~~~~~~~~~~-----~~~ 163 (343)
T 1e4e_A 109 QGLFELSGIPFV--GCDIQSSAICM------------------DKSLTYIVAKNAGIATPAFWVINKDDRPV-----AAT 163 (343)
T ss_dssp HHHHHHHTCCBS--SCCHHHHHHHH------------------SHHHHHHHHHHTTCBCCCEEEECTTCCCC-----GGG
T ss_pred HHHHHHcCCCcc--CCCHHHHHHHh------------------CHHHHHHHHHHCCCCcCCEEEEechhhhh-----hhc
Confidence 346677899987 54444333321 2336899999999998 6666666532 135
Q ss_pred cCCCCcEEEEEecCChHHH
Q psy7785 480 FKLSIPLVVRLEGTNVQEG 498 (525)
Q Consensus 480 ~~~G~PVVlKi~~~~~~~~ 498 (525)
.|||||+|-....-..|
T Consensus 164 --~~~PvvvKP~~~~~s~G 180 (343)
T 1e4e_A 164 --FTYPVFVKPARSGSSFG 180 (343)
T ss_dssp --SCSCEEEEESSCCTTTT
T ss_pred --cCCCEEEEeCCCCCCCC
Confidence 39999999876654333
No 142
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=85.47 E-value=0.98 Score=44.00 Aligned_cols=69 Identities=17% Similarity=0.244 Sum_probs=42.1
Q ss_pred HHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHH-----HHH
Q psy7785 404 RILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAAS-----LVN 475 (525)
Q Consensus 404 ~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~-----~~~ 475 (525)
..++..|+|++ ....+++.... +-...+++|+++|||+ ..+.+. ++.+ ..+
T Consensus 74 ~~~e~~g~~~~--g~~~~~~~~~~------------------dK~~~~~~l~~~gi~~p~~~~~~~~-~~~~~~~~~~~~ 132 (306)
T 1iow_A 74 GMLELMGLPYT--GSGVMASALSM------------------DKLRSKLLWQGAGLPVAPWVALTRA-EFEKGLSDKQLA 132 (306)
T ss_dssp HHHHHHTCCBS--SCCHHHHHHHH------------------CHHHHHHHHHHTTCCBCCEEEEEHH-HHHHCCCTHHHH
T ss_pred HHHHHcCCCcc--CCCHHHHHHHc------------------CHHHHHHHHHHCCCCCCCeEEEchh-hhhccchhhhhh
Confidence 35566799976 44333333321 2336789999999999 455555 4433 000
Q ss_pred HhhhcCCCCcEEEEEecCCh
Q psy7785 476 ACKSFKLSIPLVVRLEGTNV 495 (525)
Q Consensus 476 aa~~~~~G~PVVlKi~~~~~ 495 (525)
.+++ .|||+|+|-....-
T Consensus 133 ~~~~--~~~p~vvKP~~g~~ 150 (306)
T 1iow_A 133 EISA--LGLPVIVKPSREGS 150 (306)
T ss_dssp HHHT--TCSSEEEEETTCCT
T ss_pred HHhc--cCCCEEEEeCCCCC
Confidence 2345 39999999876543
No 143
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=82.27 E-value=26 Score=34.31 Aligned_cols=163 Identities=12% Similarity=0.114 Sum_probs=88.0
Q ss_pred CCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHHH
Q psy7785 329 ANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQEG 402 (525)
Q Consensus 329 aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~ 402 (525)
--|.| -|..+.+.+.+.++.+.+ .++|+++++-..|. ... ..+.+..++... .+.||++..++++..++
T Consensus 10 vTPf~-dg~iD~~~l~~lv~~li~-~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~---grvpviaGvg~~~t~~a 84 (294)
T 2ehh_A 10 ITPFK-EGEVDYEALGNLIEFHVD-NGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAA---GRIKVIAGTGGNATHEA 84 (294)
T ss_dssp CCCEE-TTEECHHHHHHHHHHHHT-TTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT---TSSEEEEECCCSCHHHH
T ss_pred ecCcC-CCCcCHHHHHHHHHHHHH-CCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC---CCCcEEEecCCCCHHHH
Confidence 34777 788898989999999886 48999998644432 122 234444444433 36888887766555555
Q ss_pred HH---HHhhCCC-------CccccCCHHHHHHHHHHhhcccCCCCeEE-EeCCCCHHHHHHHHHHCCCCeEEEcChhHHH
Q psy7785 403 KR---ILDESKL-------PLIFASDLDEAASLVNACKSFKLSIPLVV-RLEGTNVQEGKRILDESKLPLIFASDLDEAA 471 (525)
Q Consensus 403 ~~---~L~~~Gv-------pvf~~~s~~~Av~Al~~l~~~~~~~P~~~-~l~g~~e~eak~LL~ayGIpv~lA~s~deAv 471 (525)
.+ ...+.|. |.|...+.+..++.+.+..+. ...|+.. ..|+. .|+.+ +.+...
T Consensus 85 i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a-~~lPiilYn~P~~-----------tg~~l----~~~~~~ 148 (294)
T 2ehh_A 85 VHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQE-VDIPIIIYNIPSR-----------TCVEI----SVDTMF 148 (294)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHH-CCSCEEEEECHHH-----------HSCCC----CHHHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEeCCcc-----------cCcCC----CHHHHH
Confidence 43 3345665 555444555555555444331 2344432 12110 02211 334334
Q ss_pred HHHHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHH
Q psy7785 472 SLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDE 517 (525)
Q Consensus 472 ~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (525)
+ .+++. .-=+-+|-.+.+...-.+++...+..+.++.-.|+
T Consensus 149 ~---La~~~--pnivgiKds~gd~~~~~~~~~~~~~~f~v~~G~d~ 189 (294)
T 2ehh_A 149 K---LASEC--ENIVASKESTPNMDRISEIVKRLGESFSVLSGDDS 189 (294)
T ss_dssp H---HHHHC--TTEEEEEECCSCHHHHHHHHHHHCTTSEEEESSGG
T ss_pred H---HHhhC--CCEEEEEeCCCCHHHHHHHHHhcCCCeEEEECcHH
Confidence 3 23231 22245788888888777777652223444544343
No 144
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=82.21 E-value=0.79 Score=45.76 Aligned_cols=64 Identities=17% Similarity=0.278 Sum_probs=42.4
Q ss_pred HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe---EEEcChhHHHHHHHHhhh
Q psy7785 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL---IFASDLDEAASLVNACKS 479 (525)
Q Consensus 403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~ 479 (525)
...|+..|+|++ .+...++.... +-...+++|+++|||+ ..+.+.+++ +. +
T Consensus 95 ~~~le~~gip~~--g~~~~~~~~~~------------------dK~~~k~~l~~~Gip~p~~~~~~~~~~~-----~~-~ 148 (322)
T 2fb9_A 95 QGFLELLGKPYV--GAGVAASALCM------------------DKDLSKRVLAQAGVPVVPWVAVRKGEPP-----VV-P 148 (322)
T ss_dssp HHHHHHHTCCBS--SCCHHHHHHHH------------------CHHHHHHHHHHTTCCCCCEEEEETTSCC-----CC-C
T ss_pred HHHHHHcCCCee--CcCHHHHHHHc------------------CHHHHHHHHHHCCCCCCCEEEEECchhh-----hh-c
Confidence 456777899987 44333333221 1336899999999999 566666541 12 4
Q ss_pred cCCCCcEEEEEecCC
Q psy7785 480 FKLSIPLVVRLEGTN 494 (525)
Q Consensus 480 ~~~G~PVVlKi~~~~ 494 (525)
.|||||+|-....
T Consensus 149 --~g~PvvvKP~~g~ 161 (322)
T 2fb9_A 149 --FDPPFFVKPANTG 161 (322)
T ss_dssp --SCSCEEEEETTCC
T ss_pred --cCCCEEEEeCCCC
Confidence 4999999986654
No 145
>1z2n_X Inositol 1,3,4-trisphosphate 5/6-kinase; inositol phosphate kinase, ATP-grAsp, transferase; HET: ADP; 1.20A {Entamoeba histolytica} PDB: 1z2o_X* 1z2p_X*
Probab=82.05 E-value=2.7 Score=41.34 Aligned_cols=41 Identities=24% Similarity=0.415 Sum_probs=30.4
Q ss_pred HHHHHHHHCCCCe---EEEcChhHHHHHHHHhhhcCCCCcEEEEEec
Q psy7785 449 EGKRILDESKLPL---IFASDLDEAASLVNACKSFKLSIPLVVRLEG 492 (525)
Q Consensus 449 eak~LL~ayGIpv---~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~ 492 (525)
..+++|++.|||+ .+..+.+++.+. +++...|||+|+|-..
T Consensus 101 ~~~~~l~~~gi~~P~~~~~~~~~~~~~~---~~~~~~~~P~vvKP~~ 144 (324)
T 1z2n_X 101 EINALLIKNNIPIPNSFSVKSKEEVIQL---LQSKQLILPFIVKPEN 144 (324)
T ss_dssp HHHHHHHHTTCCCSCEEEESSHHHHHHH---HHTTCSCSSEEEEESB
T ss_pred HHHHHHHHCCCCCCCEEEeCCHHHHHHH---HHHcCCCCCEEEeeCC
Confidence 5788999999999 667788877663 3342125999999865
No 146
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=80.37 E-value=12 Score=35.37 Aligned_cols=123 Identities=10% Similarity=-0.005 Sum_probs=65.7
Q ss_pred CcEEEEecchhHHHH--HHHHHHHcCCC--------------CCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecc
Q psy7785 302 GNIGCLVNGAGLAMA--TMDIIKLHGGE--------------PANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFG 365 (525)
Q Consensus 302 ~rIaIitnsGG~gvl--aaD~~~~~Gl~--------------~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~ 365 (525)
.++.+||.||+.|+| +++.+.+.|+. +.|++.-.--...=..++.+-.-.+ |++ |..++
T Consensus 40 ~g~~lV~GGg~~GlM~aa~~gA~~~GG~~iGv~p~~l~~~e~~~~~~~~~~~~~~~~~Rk~~~~~~s----da~-I~lpG 114 (216)
T 1ydh_A 40 RKIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIEISGETVGDVRVVADMHERKAAMAQEA----EAF-IALPG 114 (216)
T ss_dssp TTCEEEECCCSSHHHHHHHHHHHHTTCCEEEEEEGGGHHHHCCSSCCSEEEEESSHHHHHHHHHHHC----SEE-EECSC
T ss_pred CCCEEEECCCcccHhHHHHHHHHHcCCcEEEEechhcCccccccCCCCcccccCCHHHHHHHHHHhC----CEE-EEeCC
Confidence 468888887766777 55888888873 2333211000011112333323233 444 44567
Q ss_pred cccChHHHHHHHHHHHHhcCCCCcEEEEeC-Cc--chHHHHHHHhhCCCC-------ccccCCHHHHHHHHHHhh
Q psy7785 366 GIVNCATIAKGLVNACKSFKLSIPLVVRLE-GT--NVQEGKRILDESKLP-------LIFASDLDEAASLVNACK 430 (525)
Q Consensus 366 ~~~~~~~ia~~i~~a~~~~~~~kPivv~~~-g~--~~~~~~~~L~~~Gvp-------vf~~~s~~~Av~Al~~l~ 430 (525)
|.-..+++++.+.-..-.. ++|||++.-. |- .-..-.+.+.+.|+- ++.++++++++..+..+.
T Consensus 115 G~GTLdElfE~lt~~qlg~-~~kPvvll~~~gfw~~l~~~l~~~~~~Gfi~~~~~~~~~~~d~~ee~~~~l~~~~ 188 (216)
T 1ydh_A 115 GYGTMEELLEMITWSQLGI-HKKTVGLLNVDGYYNNLLALFDTGVEEGFIKPGARNIVVSAPTAKELMEKMEEYT 188 (216)
T ss_dssp SHHHHHHHHHHHHHHHHTS-CCCEEEEECGGGTTHHHHHHHHHHHHTTSSCHHHHTTEEEESSHHHHHHHHHHCC
T ss_pred CccHHHHHHHHHHHHHhcc-cCCCEEEecCCccchHHHHHHHHHHHCCCCChHHcCeEEEeCCHHHHHHHHHHhc
Confidence 7655677887765443222 6899986532 21 111122344455541 222599999999987643
No 147
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=79.65 E-value=44 Score=32.71 Aligned_cols=164 Identities=12% Similarity=0.174 Sum_probs=89.0
Q ss_pred CeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHH
Q psy7785 330 NFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGK 403 (525)
Q Consensus 330 NPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~ 403 (525)
-|.|=-|..+.+.+.+.++.+.+ .++|+++++-..|. ... ..+.+..++... .+.||++..+++...++.
T Consensus 17 TPf~~dg~iD~~~l~~lv~~li~-~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~---grvpviaGvg~~~t~~ai 92 (297)
T 3flu_A 17 TPMNQDGSIHYEQLRDLIDWHIE-NGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVA---KRVPVIAGTGANNTVEAI 92 (297)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-TTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT---TSSCEEEECCCSSHHHHH
T ss_pred ccCCCCCCcCHHHHHHHHHHHHH-cCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhC---CCCcEEEeCCCcCHHHHH
Confidence 35555678888889999999886 58999998644442 122 234444444443 368999876665555554
Q ss_pred H---HHhhCCC-------CccccCCHHHHHHHHHHhhcccCCCCeEE-EeCCCCHHHHHHHHHHCCCCeEEEcChhHHHH
Q psy7785 404 R---ILDESKL-------PLIFASDLDEAASLVNACKSFKLSIPLVV-RLEGTNVQEGKRILDESKLPLIFASDLDEAAS 472 (525)
Q Consensus 404 ~---~L~~~Gv-------pvf~~~s~~~Av~Al~~l~~~~~~~P~~~-~l~g~~e~eak~LL~ayGIpv~lA~s~deAv~ 472 (525)
+ ...+.|. |.|...+.+..++.+.+..+. ...|+.. ..|+. .|+++ +.+...+
T Consensus 93 ~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a-~~lPiilYn~P~~-----------tg~~l----~~~~~~~ 156 (297)
T 3flu_A 93 ALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEA-TSIPMIIYNVPGR-----------TVVSM----TNDTILR 156 (297)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHH-CCSCEEEEECHHH-----------HSSCC----CHHHHHH
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh-CCCCEEEEECCch-----------hccCC----CHHHHHH
Confidence 3 4445665 555444555544444443321 2344432 12110 02221 3333332
Q ss_pred HHHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHHHH
Q psy7785 473 LVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 519 (525)
Q Consensus 473 ~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (525)
.+ +. .-=+-+|-.+.+.+.-.++++..+..+.++.-.|+..
T Consensus 157 ---La-~~--pnivgiKdssgd~~~~~~~~~~~~~~f~v~~G~d~~~ 197 (297)
T 3flu_A 157 ---LA-EI--PNIVGVKEASGNIGSNIELINRAPEGFVVLSGDDHTA 197 (297)
T ss_dssp ---HT-TS--TTEEEEEECSCCHHHHHHHHHHSCTTCEEEECCGGGH
T ss_pred ---HH-cC--CCEEEEEeCCCCHHHHHHHHHhcCCCeEEEECcHHHH
Confidence 23 31 2226688888888888887776434455565555443
No 148
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=79.50 E-value=27 Score=34.63 Aligned_cols=166 Identities=12% Similarity=0.171 Sum_probs=91.7
Q ss_pred CCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHHH
Q psy7785 329 ANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQEG 402 (525)
Q Consensus 329 aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~ 402 (525)
--|.|=-|..+.+.+.+.++-+.+ .++|+++++-..|. ... ..+.+..++... .+.||++..+++...++
T Consensus 31 vTPf~~dg~iD~~~l~~li~~li~-~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~---grvpViaGvg~~st~~a 106 (315)
T 3si9_A 31 ITPFDDNGAIDEKAFCNFVEWQIT-QGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVA---KRVPVVAGAGSNSTSEA 106 (315)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHH-TTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHT---TSSCBEEECCCSSHHHH
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHH-cCCCEEEeCccccCccccCHHHHHHHHHHHHHHhC---CCCcEEEeCCCCCHHHH
Confidence 345555678888889999999886 58999997644442 112 234444444433 36899887666555555
Q ss_pred HH---HHhhCCC-------CccccCCHHHHHHHHHHhhcccCCCCeEE-EeCCCCHHHHHHHHHHCCCCeEEEcChhHHH
Q psy7785 403 KR---ILDESKL-------PLIFASDLDEAASLVNACKSFKLSIPLVV-RLEGTNVQEGKRILDESKLPLIFASDLDEAA 471 (525)
Q Consensus 403 ~~---~L~~~Gv-------pvf~~~s~~~Av~Al~~l~~~~~~~P~~~-~l~g~~e~eak~LL~ayGIpv~lA~s~deAv 471 (525)
.+ ...+.|. |.|...+.+..++.+.+..+. ...|+.. ..|+. .|+.+ +.+...
T Consensus 107 i~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a-~~lPiilYn~P~~-----------tg~~l----~~~~~~ 170 (315)
T 3si9_A 107 VELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKA-ISIPIIIYNIPSR-----------SVIDM----AVETMR 170 (315)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHH-CSSCEEEEECHHH-----------HSCCC----CHHHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHc-CCCCEEEEeCchh-----------hCCCC----CHHHHH
Confidence 43 4455665 555444555544444444321 2344433 12110 02221 334333
Q ss_pred HHHHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHHHH
Q psy7785 472 SLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 519 (525)
Q Consensus 472 ~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (525)
+ .+++. .-=+-+|-.+.+...-.+++...+..+.++.-.|+..
T Consensus 171 ~---La~~~--pnIvgiKdssgd~~~~~~l~~~~~~~f~v~~G~d~~~ 213 (315)
T 3si9_A 171 D---LCRDF--KNIIGVKDATGKIERASEQREKCGKDFVQLSGDDCTA 213 (315)
T ss_dssp H---HHHHC--TTEEEEEECSCCTHHHHHHHHHHCSSSEEEESCGGGH
T ss_pred H---HHhhC--CCEEEEEeCCCCHHHHHHHHHHcCCCeEEEecCHHHH
Confidence 3 34332 2226688888888888888876333454565544443
No 149
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=77.92 E-value=25 Score=34.67 Aligned_cols=151 Identities=13% Similarity=0.124 Sum_probs=84.5
Q ss_pred CCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHH
Q psy7785 328 PANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQE 401 (525)
Q Consensus 328 ~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~ 401 (525)
+--|.| -|..+.+.+.+.++-+.+. ++|+++++-..|. ... ..+.+..++... .+.||++..+++...+
T Consensus 21 ~vTPf~-dg~iD~~~l~~lv~~li~~-Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~---grvpViaGvg~~st~~ 95 (306)
T 1o5k_A 21 IVTPFK-NGELDLESYERLVRYQLEN-GVNALIVLGTTGESPTVNEDEREKLVSRTLEIVD---GKIPVIVGAGTNSTEK 95 (306)
T ss_dssp CCCCEE-TTEECHHHHHHHHHHHHHT-TCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHT---TSSCEEEECCCSCHHH
T ss_pred eecCcC-CCCcCHHHHHHHHHHHHHc-CCCEEEeCccccchhhCCHHHHHHHHHHHHHHhC---CCCeEEEcCCCccHHH
Confidence 356788 8889999999999998875 8999998644432 122 234444444433 3689988776655555
Q ss_pred HHH---HHhhCCC-------CccccCCHHHHHHHHHHhhcccCCCCeEE-EeCCCCHHHHHHHHHHCCCCeEEEcChhHH
Q psy7785 402 GKR---ILDESKL-------PLIFASDLDEAASLVNACKSFKLSIPLVV-RLEGTNVQEGKRILDESKLPLIFASDLDEA 470 (525)
Q Consensus 402 ~~~---~L~~~Gv-------pvf~~~s~~~Av~Al~~l~~~~~~~P~~~-~l~g~~e~eak~LL~ayGIpv~lA~s~deA 470 (525)
+.+ ...+.|. |.|...+.+..++.+.+.++. ...|+.. ..|+. .|+.+ +.+..
T Consensus 96 ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a-~~lPiilYn~P~~-----------tg~~l----~~~~~ 159 (306)
T 1o5k_A 96 TLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISER-TDLGIVVYNVPGR-----------TGVNV----LPETA 159 (306)
T ss_dssp HHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTT-CSSCEEEEECHHH-----------HSCCC----CHHHH
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh-CCCCEEEEeCccc-----------cCcCC----CHHHH
Confidence 544 3344554 555444555555555444431 2345443 22210 02221 33433
Q ss_pred HHHHHHhhhcCCCCcEEEEEecCChHHHHHhhhh
Q psy7785 471 ASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDE 504 (525)
Q Consensus 471 v~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~ 504 (525)
.+ .+++. .-=+-+|-.+.+...-.+++..
T Consensus 160 ~~---La~~~--pnIvgiKdssgd~~~~~~~~~~ 188 (306)
T 1o5k_A 160 AR---IAADL--KNVVGIXEANPDIDQIDRTVSL 188 (306)
T ss_dssp HH---HHHHC--TTEEEEEECCCCHHHHHHHHHH
T ss_pred HH---HHHhC--CCEEEEeCCCCCHHHHHHHHHh
Confidence 33 23231 2235678888887777777764
No 150
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=77.41 E-value=44 Score=33.05 Aligned_cols=164 Identities=11% Similarity=0.162 Sum_probs=89.1
Q ss_pred CCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHHH
Q psy7785 329 ANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQEG 402 (525)
Q Consensus 329 aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~ 402 (525)
--|.|=-|..+.+.+.+.++.+.+ .++|+++++-..|. ... ..+.+..++... .+.||++..+++...++
T Consensus 32 vTPf~~dg~iD~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~---grvpViaGvg~~st~ea 107 (314)
T 3qze_A 32 VTPFDAQGRLDWDSLAKLVDFHLQ-EGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVK---GRIPVIAGTGANSTREA 107 (314)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHH-HTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHT---TSSCEEEECCCSSHHHH
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC---CCCcEEEeCCCcCHHHH
Confidence 345655678888889999998876 47999998644432 112 234444444443 35899887666555555
Q ss_pred HH---HHhhCCC-------CccccCCHHHHHHHHHHhhcccCCCCeEE-EeCCCCHHHHHHHHHHCCCCeEEEcChhHHH
Q psy7785 403 KR---ILDESKL-------PLIFASDLDEAASLVNACKSFKLSIPLVV-RLEGTNVQEGKRILDESKLPLIFASDLDEAA 471 (525)
Q Consensus 403 ~~---~L~~~Gv-------pvf~~~s~~~Av~Al~~l~~~~~~~P~~~-~l~g~~e~eak~LL~ayGIpv~lA~s~deAv 471 (525)
.+ ...+.|. |.|...+.+..++.+.+..+. ...|+.. ..|+. .|+.+ +++...
T Consensus 108 i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a-~~lPiilYn~P~~-----------tg~~l----~~~~~~ 171 (314)
T 3qze_A 108 VALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEA-VAIPQILYNVPGR-----------TSCDM----LPETVE 171 (314)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHH-SCSCEEEEECHHH-----------HSCCC----CHHHHH
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEeCccc-----------cCCCC----CHHHHH
Confidence 43 4445666 555444555544444444321 2344432 12110 02221 333333
Q ss_pred HHHHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHHH
Q psy7785 472 SLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEA 518 (525)
Q Consensus 472 ~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (525)
+ .+ +. .-=+-+|-.+.+.+.-.+++...+..+.++.-.|+.
T Consensus 172 ~---La-~~--pnIvgiKdssgd~~~~~~~~~~~~~~f~v~~G~d~~ 212 (314)
T 3qze_A 172 R---LS-KV--PNIIGIKEATGDLQRAKEVIERVGKDFLVYSGDDAT 212 (314)
T ss_dssp H---HH-TS--TTEEEEEECSCCHHHHHHHHHHSCTTSEEEESCGGG
T ss_pred H---Hh-cC--CCEEEEEcCCCCHHHHHHHHHHcCCCeEEEecChHH
Confidence 3 23 21 222668888888888777776643344455544443
No 151
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=76.39 E-value=55 Score=31.89 Aligned_cols=166 Identities=16% Similarity=0.186 Sum_probs=90.8
Q ss_pred eeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHH
Q psy7785 331 FLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKR 404 (525)
Q Consensus 331 PlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~ 404 (525)
|.|=-|..+.+.+.+.++.+.+ .++|+++++-..|. ... ..+.+..++... .+.||++..+++...++.+
T Consensus 12 Pf~~dg~iD~~~l~~lv~~li~-~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~---gr~pviaGvg~~~t~~ai~ 87 (291)
T 3tak_A 12 PMLKDGGVDWKSLEKLVEWHIE-QGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVAN---KRIPIIAGTGANSTREAIE 87 (291)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHH-HTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT---TSSCEEEECCCSSHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHHH-CCCCEEEECccccccccCCHHHHHHHHHHHHHHhC---CCCeEEEeCCCCCHHHHHH
Confidence 5555578888889999998886 58999998644442 122 234444444433 3589988766655555543
Q ss_pred ---HHhhCCC-------CccccCCHHHHHHHHHHhhcccCCCCeEE-EeCCCCHHHHHHHHHHCCCCeEEEcChhHHHHH
Q psy7785 405 ---ILDESKL-------PLIFASDLDEAASLVNACKSFKLSIPLVV-RLEGTNVQEGKRILDESKLPLIFASDLDEAASL 473 (525)
Q Consensus 405 ---~L~~~Gv-------pvf~~~s~~~Av~Al~~l~~~~~~~P~~~-~l~g~~e~eak~LL~ayGIpv~lA~s~deAv~~ 473 (525)
...+.|. |.|...+.+..++.+.+..+. ...|+.. ..|+. .|+++ +.+...+
T Consensus 88 la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a-~~lPiilYn~P~~-----------tg~~l----~~~~~~~- 150 (291)
T 3tak_A 88 LTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEA-VELPLILYNVPGR-----------TGVDL----SNDTAVR- 150 (291)
T ss_dssp HHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHH-CCSCEEEEECHHH-----------HSCCC----CHHHHHH-
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEecccc-----------cCCCC----CHHHHHH-
Confidence 3445555 555434555544444333321 1344332 11110 02211 3333333
Q ss_pred HHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHHHHHHh
Q psy7785 474 VNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAANWF 522 (525)
Q Consensus 474 ~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 522 (525)
.+ +. .-=+-+|-.+.+...-.++++..+..+.++.-.|+....+
T Consensus 151 --La-~~--pnivgiK~ssgd~~~~~~~~~~~~~~f~v~~G~d~~~~~~ 194 (291)
T 3tak_A 151 --LA-EI--PNIVGIKDATGDVPRGKALIDALNGKMAVYSGDDETAWEL 194 (291)
T ss_dssp --HT-TS--TTEEEEEECSCCHHHHHHHHHHHTTSSEEEECCHHHHHHH
T ss_pred --HH-cC--CCEEEEEeCCCCHHHHHHHHHHcCCCeEEEECcHHHHHHH
Confidence 33 31 2226689888888888888876334455676666655443
No 152
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=74.74 E-value=3.3 Score=33.48 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=32.6
Q ss_pred EcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhh
Q psy7785 464 ASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILD 503 (525)
Q Consensus 464 A~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~ 503 (525)
=++.+||.+.++..++ |.|||+-+.+.+.++|+||++
T Consensus 12 P~sy~Da~~I~d~Lr~---~~~VvvNL~~ld~~~AqRivD 48 (87)
T 3p04_A 12 LHSFEDAQVIGGAFRD---GDAVVFDMSLLSREEARRIVD 48 (87)
T ss_dssp CSSGGGHHHHHHHHHT---TCCEEEECTTSCHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHC---CCEEEEECCCCCHHHHHHHHH
Confidence 3577888888777766 999999999999999999997
No 153
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=74.07 E-value=53 Score=32.50 Aligned_cols=166 Identities=11% Similarity=0.118 Sum_probs=91.2
Q ss_pred CCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHHH
Q psy7785 329 ANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQEG 402 (525)
Q Consensus 329 aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~ 402 (525)
--|.|=-|..+.+.+.+.++-+.+ .++|+++++-..|. ... ..+.+..++... .+.||++..+++...++
T Consensus 33 vTPf~~dg~iD~~~l~~lv~~li~-~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~---grvpViaGvg~~~t~~a 108 (315)
T 3na8_A 33 ITPFAADGGLDLPALGRSIERLID-GGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVA---HRVPTIVSVSDLTTAKT 108 (315)
T ss_dssp CCCBCTTSSBCHHHHHHHHHHHHH-TTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHT---TSSCBEEECCCSSHHHH
T ss_pred eCcCCCCCCcCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHHHHHHHHHHHHhC---CCCcEEEecCCCCHHHH
Confidence 445665678888889999999886 58999998644432 112 234444444433 36899887666555555
Q ss_pred HH---HHhhCCC-------CccccCCHHHHHHHHHHhhcccCCCCeEE-EeCCCCHHHHHHHHHHCCCCeEEEcChhHHH
Q psy7785 403 KR---ILDESKL-------PLIFASDLDEAASLVNACKSFKLSIPLVV-RLEGTNVQEGKRILDESKLPLIFASDLDEAA 471 (525)
Q Consensus 403 ~~---~L~~~Gv-------pvf~~~s~~~Av~Al~~l~~~~~~~P~~~-~l~g~~e~eak~LL~ayGIpv~lA~s~deAv 471 (525)
.+ ...+.|. |.|...+.+..++.+.+..+. ...|+.. ..|+. .|+++ +.+...
T Consensus 109 i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a-~~lPiilYn~P~~-----------tg~~l----~~~~~~ 172 (315)
T 3na8_A 109 VRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEA-IGVPVMLYNNPGT-----------SGIDM----SVELIL 172 (315)
T ss_dssp HHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHH-CSSCEEEEECHHH-----------HSCCC----CHHHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh-CCCcEEEEeCcch-----------hCcCC----CHHHHH
Confidence 43 4455665 555444555555444444321 2344432 11110 12221 333333
Q ss_pred HHHHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHHHH
Q psy7785 472 SLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 519 (525)
Q Consensus 472 ~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (525)
+ .+.+. .-=+-+|-.+.+...-.++++..+..+.++.-.|+..
T Consensus 173 ~---L~a~~--pnIvgiKdssgd~~~~~~~~~~~~~~f~v~~G~D~~~ 215 (315)
T 3na8_A 173 R---IVREV--DNVTMVKESTGDIQRMHKLRLLGEGRVPFYNGCNPLA 215 (315)
T ss_dssp H---HHHHS--TTEEEEEECSSCHHHHHHHHHHTTTCSCEEECCGGGH
T ss_pred H---HHhcC--CCEEEEECCCCCHHHHHHHHHHcCCCEEEEeCchHHH
Confidence 3 21232 2236689888888888888876333454565544433
No 154
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=73.30 E-value=72 Score=31.22 Aligned_cols=162 Identities=12% Similarity=0.204 Sum_probs=86.6
Q ss_pred CeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHH
Q psy7785 330 NFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGK 403 (525)
Q Consensus 330 NPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~ 403 (525)
-|.|=-|..+.+.+.+.++-+.+. ++|+++++-..|. ... ..+.+..++... .+.||++..+++...++.
T Consensus 22 TPf~~dg~iD~~~l~~lv~~li~~-Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~---grvpViaGvg~~~t~~ai 97 (301)
T 1xky_A 22 TPFDINGNIDFAKTTKLVNYLIDN-GTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVD---KRVPVIAGTGSNNTHASI 97 (301)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHHT-TCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT---TSSCEEEECCCSCHHHHH
T ss_pred CcCCCCCCcCHHHHHHHHHHHHHc-CCCEEEECccccChhhCCHHHHHHHHHHHHHHhC---CCceEEeCCCCCCHHHHH
Confidence 344445778888899999998875 8999998644432 122 234444444433 368999877665555554
Q ss_pred H---HHhhCCC-------CccccCCHHHHHHHHHHhhcccCCCCeEE-EeCCCCHHHHHHHHHHCCCCeEEEcChhHHHH
Q psy7785 404 R---ILDESKL-------PLIFASDLDEAASLVNACKSFKLSIPLVV-RLEGTNVQEGKRILDESKLPLIFASDLDEAAS 472 (525)
Q Consensus 404 ~---~L~~~Gv-------pvf~~~s~~~Av~Al~~l~~~~~~~P~~~-~l~g~~e~eak~LL~ayGIpv~lA~s~deAv~ 472 (525)
+ ...+.|. |.|...+.+..++.+.+.++. ...|+.. ..|+. .|+.+ +.+...+
T Consensus 98 ~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a-~~lPiilYn~P~~-----------tg~~l----~~~~~~~ 161 (301)
T 1xky_A 98 DLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAES-TPLPVMLYNVPGR-----------SIVQI----SVDTVVR 161 (301)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHT-CSSCEEEEECHHH-----------HSSCC----CHHHHHH
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEeCccc-----------cCCCC----CHHHHHH
Confidence 3 3445665 555444555555554444331 2345443 12210 02211 3333333
Q ss_pred HHHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHH
Q psy7785 473 LVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDE 517 (525)
Q Consensus 473 ~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (525)
.+ +. .-=+-+|-.+.+...-.+++...+..+.++.-.|+
T Consensus 162 ---La-~~--pnIvgiKdssgd~~~~~~~~~~~~~~f~v~~G~d~ 200 (301)
T 1xky_A 162 ---LS-EI--ENIVAIKDAGGDVLTMTEIIEKTADDFAVYSGDDG 200 (301)
T ss_dssp ---HH-TS--TTEEEEEECSSCHHHHHHHHHHSCTTCEEEESSGG
T ss_pred ---HH-cC--CCEEEEEcCCCCHHHHHHHHHhcCCCeEEEECcHH
Confidence 22 21 22355788888887777777653223444544343
No 155
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=72.89 E-value=65 Score=31.36 Aligned_cols=163 Identities=14% Similarity=0.151 Sum_probs=88.2
Q ss_pred eeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHH
Q psy7785 331 FLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKR 404 (525)
Q Consensus 331 PlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~ 404 (525)
|.|=-|..+.+.+.+.++.+.++.++|+++++-..|. ... ..+.+..++... .+.||++..+++...++.+
T Consensus 14 Pf~~dg~iD~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~---grvpviaGvg~~~t~~ai~ 90 (293)
T 1f6k_A 14 SFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAK---DQIALIAQVGSVNLKEAVE 90 (293)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHT---TSSEEEEECCCSCHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhC---CCCeEEEecCCCCHHHHHH
Confidence 4444578888889999999988568999998644432 122 233444444433 3688988776655555543
Q ss_pred ---HHhhCCC-------CccccCCHHHHHHHHHHhhcccCCCCeEE-EeCCCCHHHHHHHHHHCCCCeEEEcChhHHHHH
Q psy7785 405 ---ILDESKL-------PLIFASDLDEAASLVNACKSFKLSIPLVV-RLEGTNVQEGKRILDESKLPLIFASDLDEAASL 473 (525)
Q Consensus 405 ---~L~~~Gv-------pvf~~~s~~~Av~Al~~l~~~~~~~P~~~-~l~g~~e~eak~LL~ayGIpv~lA~s~deAv~~ 473 (525)
...+.|. |.|...+.+...+.+.+..+. ...|+.. ..|+. .|+.+ +.+...+
T Consensus 91 la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a-~~lPiilYn~P~~-----------tg~~l----~~~~~~~- 153 (293)
T 1f6k_A 91 LGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAE-TGSNMIVYSIPFL-----------TGVNM----GIEQFGE- 153 (293)
T ss_dssp HHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHH-HCCCEEEEECHHH-----------HCCCC----CHHHHHH-
T ss_pred HHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh-CCCCEEEEECccc-----------cCcCC----CHHHHHH-
Confidence 3344554 555444555544444443321 1234332 11110 02211 3343333
Q ss_pred HHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHHHH
Q psy7785 474 VNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 519 (525)
Q Consensus 474 ~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (525)
.+ +. .-=+-+|-.+.+...-.+++... ..+.++.-.|+..
T Consensus 154 --La-~~--pnIvgiK~s~gd~~~~~~~~~~~-~~f~v~~G~d~~~ 193 (293)
T 1f6k_A 154 --LY-KN--PKVLGVKFTAGDFYLLERLKKAY-PNHLIWAGFDEMM 193 (293)
T ss_dssp --HH-TS--TTEEEEEECSCCHHHHHHHHHHC-TTSEEEECCGGGH
T ss_pred --Hh-cC--CCEEEEEECCCCHHHHHHHHHhC-CCeEEEECcHHHH
Confidence 23 21 22366888888888888877652 2355565545433
No 156
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=72.14 E-value=68 Score=31.18 Aligned_cols=161 Identities=10% Similarity=0.172 Sum_probs=85.9
Q ss_pred CCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHHH
Q psy7785 329 ANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQEG 402 (525)
Q Consensus 329 aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~ 402 (525)
--|.| -|..+.+.+.+.++.+.+. ++|+++++-..|. ... ..+.+..++... .+.||++..++++..++
T Consensus 10 vTPf~-dg~iD~~~l~~lv~~li~~-Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~---gr~pviaGvg~~~t~~a 84 (289)
T 2yxg_A 10 ITPFK-NKEVDFDGLEENINFLIEN-GVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVN---GRVQVIAGAGSNCTEEA 84 (289)
T ss_dssp CCCEE-TTEECHHHHHHHHHHHHHT-TCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT---TSSEEEEECCCSSHHHH
T ss_pred ecCcC-CCCcCHHHHHHHHHHHHHC-CCCEEEECccccChhhCCHHHHHHHHHHHHHHhC---CCCcEEEeCCCCCHHHH
Confidence 35778 8889999999999998874 8999998644442 122 234444444433 36888887766555555
Q ss_pred HH---HHhhCCC-------CccccCCHHHHHHHHHHhhcccCCCCeEE-EeCCCCHHHHHHHHHHCCCCeEEEcChhHHH
Q psy7785 403 KR---ILDESKL-------PLIFASDLDEAASLVNACKSFKLSIPLVV-RLEGTNVQEGKRILDESKLPLIFASDLDEAA 471 (525)
Q Consensus 403 ~~---~L~~~Gv-------pvf~~~s~~~Av~Al~~l~~~~~~~P~~~-~l~g~~e~eak~LL~ayGIpv~lA~s~deAv 471 (525)
.+ ...+.|. |.|...+.+...+.+.+..+. ...|+.. ..|+. .|+.+ +.+...
T Consensus 85 i~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a-~~lPiilYn~P~~-----------tg~~l----~~~~~~ 148 (289)
T 2yxg_A 85 IELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAES-INLPIVLYNVPSR-----------TAVNL----EPKTVK 148 (289)
T ss_dssp HHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHH-CSSCEEEEECHHH-----------HSCCC----CHHHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEeCccc-----------cCcCC----CHHHHH
Confidence 43 3344554 555434555555444444321 2344432 12110 02111 333333
Q ss_pred HHHHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHH
Q psy7785 472 SLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDE 517 (525)
Q Consensus 472 ~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (525)
+ .+++. .-=+-+|-.+.+...-.+++... .+.++.-.|+
T Consensus 149 ~---La~~~--pnivgiK~s~gd~~~~~~~~~~~--~f~v~~G~d~ 187 (289)
T 2yxg_A 149 L---LAEEY--SNISAVKEANPNLSQVSELIHDA--KITVLSGNDE 187 (289)
T ss_dssp H---HHHHC--TTEEEEEECCSCTHHHHHHHHHT--CSEEEESCGG
T ss_pred H---HHHhC--CCEEEEEeCCCCHHHHHHHHHhC--CeEEEECcHH
Confidence 3 23231 22244787777777777766543 3444543333
No 157
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=72.12 E-value=71 Score=31.35 Aligned_cols=97 Identities=7% Similarity=0.063 Sum_probs=58.4
Q ss_pred CeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHH
Q psy7785 330 NFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGK 403 (525)
Q Consensus 330 NPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~ 403 (525)
-|.|=-|..+.+.+.+.++.+.+. ++|+++++-..|. ... ..+.+..++... .+.||++..+++...++.
T Consensus 26 TPf~~dg~iD~~~l~~lv~~li~~-Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~---grvpviaGvg~~st~~ai 101 (304)
T 3cpr_A 26 TPFTESGDIDIAAGREVAAYLVDK-GLDSLVLAGTTGESPTTTAAEKLELLKAVREEVG---DRAKLIAGVGTNNTRTSV 101 (304)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHHT-TCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHT---TTSEEEEECCCSCHHHHH
T ss_pred ccCCCCCCcCHHHHHHHHHHHHHc-CCCEEEECccccChhhCCHHHHHHHHHHHHHHhC---CCCcEEecCCCCCHHHHH
Confidence 455545788888899999998875 8999998644442 122 234444444433 368998877665555554
Q ss_pred H---HHhhCCC-------CccccCCHHHHHHHHHHhh
Q psy7785 404 R---ILDESKL-------PLIFASDLDEAASLVNACK 430 (525)
Q Consensus 404 ~---~L~~~Gv-------pvf~~~s~~~Av~Al~~l~ 430 (525)
+ ...+.|. |.|...+.+..++.+.+..
T Consensus 102 ~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia 138 (304)
T 3cpr_A 102 ELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIA 138 (304)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHH
Confidence 3 3445665 5554445555554444443
No 158
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=70.04 E-value=37 Score=33.34 Aligned_cols=162 Identities=15% Similarity=0.151 Sum_probs=89.0
Q ss_pred CeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHH
Q psy7785 330 NFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGK 403 (525)
Q Consensus 330 NPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~ 403 (525)
-|.|=-|..+.+.+.+.++-+.+ .++|+++++-..|. ... ..+.+..++... .+.||++..++++..++.
T Consensus 14 TPf~~dg~iD~~~l~~lv~~li~-~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~---grvpviaGvg~~~t~~ai 89 (300)
T 3eb2_A 14 SPVDAEGRVRADVMGRLCDDLIQ-AGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQ---RRVPVVAGVASTSVADAV 89 (300)
T ss_dssp CCBCTTSCBCHHHHHHHHHHHHH-TTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHT---TSSCBEEEEEESSHHHHH
T ss_pred ccCCCCCCcCHHHHHHHHHHHHH-cCCCEEEECccccCccccCHHHHHHHHHHHHHHhC---CCCcEEEeCCCCCHHHHH
Confidence 45555678888889999999886 58999987544332 122 234444444433 368998866655455554
Q ss_pred H---HHhhCCC-------CccccCCHHHHHHHHHHhhcccCCCCeEE-EeCCCCHHHHHHHHHHCCCCeEEEcChhHHHH
Q psy7785 404 R---ILDESKL-------PLIFASDLDEAASLVNACKSFKLSIPLVV-RLEGTNVQEGKRILDESKLPLIFASDLDEAAS 472 (525)
Q Consensus 404 ~---~L~~~Gv-------pvf~~~s~~~Av~Al~~l~~~~~~~P~~~-~l~g~~e~eak~LL~ayGIpv~lA~s~deAv~ 472 (525)
+ ...+.|. |.|...+.+..++.+.+..+. ...|+.. ..|+.+ |+.+ +.+...+
T Consensus 90 ~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a-~~lPiilYn~P~~t-----------g~~l----~~~~~~~ 153 (300)
T 3eb2_A 90 AQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADA-VEIPVVIYTNPQFQ-----------RSDL----TLDVIAR 153 (300)
T ss_dssp HHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHH-CSSCEEEEECTTTC-----------SSCC----CHHHHHH
T ss_pred HHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECcccc-----------CCCC----CHHHHHH
Confidence 3 3445565 555445666655555444431 2355543 234322 3322 3333333
Q ss_pred HHHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHH
Q psy7785 473 LVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDE 517 (525)
Q Consensus 473 ~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (525)
.+ +. .-=+-+|-.+.+...-.+++...+-.+.++.-.|+
T Consensus 154 ---La-~~--pnIvgiKdssgd~~~~~~~~~~~~~~f~v~~G~d~ 192 (300)
T 3eb2_A 154 ---LA-EH--PRIRYIKDASTNTGRLLSIINRCGDALQVFSASAH 192 (300)
T ss_dssp ---HH-TS--TTEEEEEECSSBHHHHHHHHHHHGGGSEEEECTTS
T ss_pred ---HH-cC--CCEEEEEcCCCCHHHHHHHHHHcCCCeEEEeCcHH
Confidence 22 31 22266888888888777777652223444544443
No 159
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=69.13 E-value=86 Score=30.64 Aligned_cols=157 Identities=15% Similarity=0.196 Sum_probs=84.6
Q ss_pred cCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHH---H
Q psy7785 335 GGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKR---I 405 (525)
Q Consensus 335 ~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~---~ 405 (525)
-|..+.+.+.+.++.+.+ .++|+++++-..|. ... ..+.+..++.... .+.||++..+++...++.+ .
T Consensus 22 dg~iD~~~l~~lv~~li~-~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g--~rvpviaGvg~~~t~~ai~la~~ 98 (301)
T 3m5v_A 22 NGKVDEQSYARLIKRQIE-NGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKG--TKVKVLAGAGSNATHEAVGLAKF 98 (301)
T ss_dssp TTEECHHHHHHHHHHHHH-TTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTT--SSCEEEEECCCSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC--CCCeEEEeCCCCCHHHHHHHHHH
Confidence 567778889999998886 58999998644442 122 2334444443332 2689988766655555543 4
Q ss_pred HhhCCC-------CccccCCHHHHHHHHHHhhcccCCCCeEE-EeCCCCHHHHHHHHHHCCCCeEEEcChhHHHHHHHHh
Q psy7785 406 LDESKL-------PLIFASDLDEAASLVNACKSFKLSIPLVV-RLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNAC 477 (525)
Q Consensus 406 L~~~Gv-------pvf~~~s~~~Av~Al~~l~~~~~~~P~~~-~l~g~~e~eak~LL~ayGIpv~lA~s~deAv~~~~aa 477 (525)
..+.|. |.|...+.+..++.+.+..+. ...|+.. ..|+. .|+.+ +++...+. +
T Consensus 99 a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a-~~lPiilYn~P~~-----------tg~~l----~~~~~~~L---a 159 (301)
T 3m5v_A 99 AKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQS-VDIPVLLYNVPGR-----------TGCEI----STDTIIKL---F 159 (301)
T ss_dssp HHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHH-CSSCEEEEECHHH-----------HSCCC----CHHHHHHH---H
T ss_pred HHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh-CCCCEEEEeCchh-----------hCcCC----CHHHHHHH---H
Confidence 445666 555444555555554444331 2345443 12110 02221 33443332 2
Q ss_pred hhcCCCCc--EEEEEecCChHHHHHhhhhCCCCceeccCHHHH
Q psy7785 478 KSFKLSIP--LVVRLEGTNVQEGKRILDESKLPLIFASDLDEA 518 (525)
Q Consensus 478 ~~~~~G~P--VVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (525)
+. +| +-+|-.+.+...-.++++.. ..+.++.-.|+.
T Consensus 160 ~~----~pnivgiKdssgd~~~~~~~~~~~-~~f~v~~G~d~~ 197 (301)
T 3m5v_A 160 RD----CENIYGVKEASGNIDKCVDLLAHE-PRMMLISGEDAI 197 (301)
T ss_dssp HH----CTTEEEEEECSSCHHHHHHHHHHC-TTSEEEECCGGG
T ss_pred hc----CCCEEEEEeCCCCHHHHHHHHHhC-CCeEEEEccHHH
Confidence 22 23 56888888888877777653 234445444443
No 160
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=68.42 E-value=34 Score=30.57 Aligned_cols=121 Identities=13% Similarity=0.062 Sum_probs=72.4
Q ss_pred CcEEEEecc------hhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEe--c-cccc----
Q psy7785 302 GNIGCLVNG------AGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNV--F-GGIV---- 368 (525)
Q Consensus 302 ~rIaIitns------GG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~--~-~~~~---- 368 (525)
-||||+... ..+---+.|.+.++|.+ .| +|+.--+-.-.+.-+.+.+.+..++|+++..- . |+..
T Consensus 14 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~Gv~-~~-i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~ 91 (156)
T 1c2y_A 14 FRFAIVVARFNEFVTRRLMEGALDTFKKYSVN-ED-IDVVWVPGAYELGVTAQALGKSGKYHAIVCLGAVVKGDTSHYDA 91 (156)
T ss_dssp CCEEEEEESTTHHHHHHHHHHHHHHHHHTTCC-SC-CEEEEESSHHHHHHHHHHHHHTTCCSEEEEEEECCCCSSTHHHH
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCC-Cc-eEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccccCCchHHHH
Confidence 478887654 23444567999999987 44 34332222334667778888888999999742 2 3332
Q ss_pred ChHHHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhc
Q psy7785 369 NCATIAKGLVNACKSFKLSIPLVVRLEG-TNVQEGKRILDESKLPLIFASDLDEAASLVNACKS 431 (525)
Q Consensus 369 ~~~~ia~~i~~a~~~~~~~kPivv~~~g-~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~ 431 (525)
.|..++++|.+..-+ +++||...... .+.+++.. +.|...- .--.+|+.+..++.+
T Consensus 92 Va~~v~~gl~~v~L~--~~vPV~~GVLT~~~~eQA~~---Rag~~~~--nKG~eaA~aAlem~~ 148 (156)
T 1c2y_A 92 VVNSASSGVLSAGLN--SGVPCVFGVLTCDNMDQAIN---RAGGKAG--NKGAESALTAIEMAS 148 (156)
T ss_dssp HHHHHHHHHHHHHHH--HTSCEEEEEECCSSHHHHHH---HEEETTE--EHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh--cCCCEEEEEeCCCCHHHHHH---HcCCccc--chHHHHHHHHHHHHH
Confidence 245667788777665 68999865443 34444433 3342222 334556666655543
No 161
>1i7n_A Synapsin II; synapse, phosphorylation, neuropeptide; 1.90A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1i7l_A 1auv_A 1aux_A*
Probab=68.40 E-value=2.8 Score=41.90 Aligned_cols=68 Identities=16% Similarity=0.163 Sum_probs=40.4
Q ss_pred HHHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCC---Ce---EEEcChhHHHHHH
Q psy7785 401 EGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKL---PL---IFASDLDEAASLV 474 (525)
Q Consensus 401 ~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGI---pv---~lA~s~deAv~~~ 474 (525)
...+.|+..|+|++ ++++....+--+.+- -....++|+..|+ |+ ....+..++
T Consensus 89 ~vl~~le~~Gvpvi--N~~~sI~~~~DK~~~---------------~~~~~~~l~~~gi~~~P~~~~~~~~~~~~~---- 147 (309)
T 1i7n_A 89 HLVIGMQYAGLPSI--NSLESIYNFCDKPWV---------------FAQMVAIFKTLGGEKFPLIEQTYYPNHREM---- 147 (309)
T ss_dssp HHHHHHHHTTCCEE--SCHHHHHHTSSHHHH---------------HHHHHHHHHHHCTTTSCBCCCEEESSGGGG----
T ss_pred HHHHHHHHCCcccc--CCHHHHHHhCCccHH---------------HHHHHHHHHhCCCCCCCCCCEEeeCChhhh----
Confidence 33556888999999 775432221111000 0245677888888 85 445555543
Q ss_pred HHhhhcCCCCcEEEEEecC
Q psy7785 475 NACKSFKLSIPLVVRLEGT 493 (525)
Q Consensus 475 ~aa~~~~~G~PVVlKi~~~ 493 (525)
.+. .|||||+|....
T Consensus 148 --~~~--~g~PvVvK~~~G 162 (309)
T 1i7n_A 148 --LTL--PTFPVVVKIGHA 162 (309)
T ss_dssp --SSC--CCSSEEEEESSC
T ss_pred --hhc--cCCCEEEEeCCC
Confidence 334 499999998653
No 162
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=67.28 E-value=1e+02 Score=30.60 Aligned_cols=167 Identities=11% Similarity=0.027 Sum_probs=90.4
Q ss_pred CCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHHH
Q psy7785 329 ANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQEG 402 (525)
Q Consensus 329 aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~ 402 (525)
--|.|=-|..+.+.+.+.++-+.+. ++|+++++-..|. ... ..+.+..++... .+.||++..+++...++
T Consensus 43 vTPF~~dg~iD~~~l~~lv~~li~~-Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~---grvpViaGvg~~st~ea 118 (332)
T 2r8w_A 43 ITPADEAGRVDIEAFSALIARLDAA-EVDSVGILGSTGIYMYLTREERRRAIEAAATILR---GRRTLMAGIGALRTDEA 118 (332)
T ss_dssp CCCBCTTCCBCHHHHHHHHHHHHHH-TCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT---TSSEEEEEECCSSHHHH
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHHc-CCCEEEECccccChhhCCHHHHHHHHHHHHHHhC---CCCcEEEecCCCCHHHH
Confidence 4555556788888899999988874 8999998644442 122 234444444433 36899887776555555
Q ss_pred HH---HHhhCCC-------CccccCCHHHHHHHHHHhhcccCCCCeEEE-eCCCCHHHHHHHHHHCCCCeEEEcChhHHH
Q psy7785 403 KR---ILDESKL-------PLIFASDLDEAASLVNACKSFKLSIPLVVR-LEGTNVQEGKRILDESKLPLIFASDLDEAA 471 (525)
Q Consensus 403 ~~---~L~~~Gv-------pvf~~~s~~~Av~Al~~l~~~~~~~P~~~~-l~g~~e~eak~LL~ayGIpv~lA~s~deAv 471 (525)
.+ ...+.|. |.|...+.+..++.+.+.++. ...|+..- .|+. .|+.+ +.+...
T Consensus 119 i~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a-~~lPiilYn~P~~-----------tg~~l----~~e~~~ 182 (332)
T 2r8w_A 119 VALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGA-TALPLAIYNNPTT-----------TRFTF----SDELLV 182 (332)
T ss_dssp HHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHH-CSSCEEEECCHHH-----------HCCCC----CHHHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEeCccc-----------cCcCC----CHHHHH
Confidence 43 3344554 555444555544444443321 23443321 1110 02211 333333
Q ss_pred HHHHHhhhcCCCCcEEEEEecCC----hHHHHHhhhhCCCCceeccCHHHHHHH
Q psy7785 472 SLVNACKSFKLSIPLVVRLEGTN----VQEGKRILDESKLPLIFASDLDEAANW 521 (525)
Q Consensus 472 ~~~~aa~~~~~G~PVVlKi~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (525)
+ .+ +. .-=+-+|-.+.+ ...-.+++...+-.+.++.--|+....
T Consensus 183 ~---La-~~--pnIvgiKdssgd~~~~~~~~~~l~~~~~~~f~v~~G~D~~~l~ 230 (332)
T 2r8w_A 183 R---LA-YI--PNIRAIKMPLPADADYAGELARLRPKLSDDFAIGYSGDWGCTD 230 (332)
T ss_dssp H---HH-TS--TTEEEEEECCCTTCCHHHHHHHHTTTSCTTCEEEECCHHHHHH
T ss_pred H---HH-cC--CCEEEEEeCCCCchhHHHHHHHHHHhcCCCEEEEeCchHHHHH
Confidence 3 23 21 222458888888 888888776533345556665655443
No 163
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=66.01 E-value=75 Score=30.89 Aligned_cols=161 Identities=12% Similarity=0.124 Sum_probs=85.3
Q ss_pred eeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHH
Q psy7785 331 FLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKR 404 (525)
Q Consensus 331 PlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~ 404 (525)
|.|=-|..+.+.+.+.++.+.+. ++|+++++-..|. ... ..+.+..++... .+.||++..+++...++.+
T Consensus 12 Pf~~dg~iD~~~l~~lv~~li~~-Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~---gr~pviaGvg~~~t~~ai~ 87 (292)
T 2ojp_A 12 PMDEKGNVCRASLKKLIDYHVAS-GTSAIVSVGTTGESATLNHDEHADVVMMTLDLAD---GRIPVIAGTGANATAEAIS 87 (292)
T ss_dssp CBCTTSCBCHHHHHHHHHHHHHH-TCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT---TSSCEEEECCCSSHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHc-CCCEEEECccccchhhCCHHHHHHHHHHHHHHhC---CCCcEEEecCCccHHHHHH
Confidence 44445778888899999988875 8999998644442 122 234444444433 3689988776655556544
Q ss_pred H---HhhCCC-------CccccCCHHHHHHHHHHhhcccCCCCeEEE-eCCCCHHHHHHHHHHCCCCeEEEcChhHHHHH
Q psy7785 405 I---LDESKL-------PLIFASDLDEAASLVNACKSFKLSIPLVVR-LEGTNVQEGKRILDESKLPLIFASDLDEAASL 473 (525)
Q Consensus 405 ~---L~~~Gv-------pvf~~~s~~~Av~Al~~l~~~~~~~P~~~~-l~g~~e~eak~LL~ayGIpv~lA~s~deAv~~ 473 (525)
. ..+.|. |.|...+.+..++.+.+..+. ...|+..- .|+. .|+.+ +.+...+
T Consensus 88 la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a-~~lPiilYn~P~~-----------tg~~l----~~~~~~~- 150 (292)
T 2ojp_A 88 LTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH-TDLPQILYNVPSR-----------TGCDL----LPETVGR- 150 (292)
T ss_dssp HHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTT-CSSCEEEECCHHH-----------HSCCC----CHHHHHH-
T ss_pred HHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEeCcch-----------hccCC----CHHHHHH-
Confidence 3 344565 555444666655555554431 23454431 1110 02211 3333333
Q ss_pred HHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHH
Q psy7785 474 VNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDE 517 (525)
Q Consensus 474 ~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (525)
.+ +. .-=+-+|-.+.+...-.+++...+..+.++.-.|+
T Consensus 151 --La-~~--pnivgiK~s~gd~~~~~~~~~~~~~~f~v~~G~d~ 189 (292)
T 2ojp_A 151 --LA-KV--KNIIGIXEATGNLTRVNQIKELVSDDFVLLSGDDA 189 (292)
T ss_dssp --HH-TS--TTEEEC-CCSCCTHHHHHHHTTSCTTSBCEESCGG
T ss_pred --HH-cC--CCEEEEeCCCCCHHHHHHHHHhcCCCEEEEECcHH
Confidence 22 21 22255777777877777777653223444544333
No 164
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=65.60 E-value=80 Score=31.61 Aligned_cols=150 Identities=11% Similarity=0.176 Sum_probs=80.8
Q ss_pred CeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHH
Q psy7785 330 NFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGK 403 (525)
Q Consensus 330 NPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~ 403 (525)
-|.|=-|..+.+.+.+.++-+.+. ++|+++++-..|. ... ..+.+..++... .+.||++..++.+..++.
T Consensus 41 TPF~~dg~ID~~~l~~lv~~li~~-Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~---grvpViaGvg~~st~eai 116 (343)
T 2v9d_A 41 TIFTADGQLDKPGTAALIDDLIKA-GVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVD---RRVPVLIGTGGTNARETI 116 (343)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHHT-TCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHT---TSSCEEEECCSSCHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHc-CCCEEEeCccccChhhCCHHHHHHHHHHHHHHhC---CCCcEEEecCCCCHHHHH
Confidence 344445788888899999998874 8999998644432 122 244444444433 368998877665555554
Q ss_pred H---HHhhCCC-------CccccCCHHHHHHHHHHhhcccCCCCeEE-EeCCCCHHHHHHHHHHCCCCeEEEcChhHHHH
Q psy7785 404 R---ILDESKL-------PLIFASDLDEAASLVNACKSFKLSIPLVV-RLEGTNVQEGKRILDESKLPLIFASDLDEAAS 472 (525)
Q Consensus 404 ~---~L~~~Gv-------pvf~~~s~~~Av~Al~~l~~~~~~~P~~~-~l~g~~e~eak~LL~ayGIpv~lA~s~deAv~ 472 (525)
+ ...+.|. |.|...+.+..++.+.+..+ ....|+.. ..++. .|+.+ +.+...+
T Consensus 117 ~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~-a~~lPiilYn~P~~-----------tg~~l----~~e~~~~ 180 (343)
T 2v9d_A 117 ELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVAD-SVTLPVMLYNFPAL-----------TGQDL----TPALVKT 180 (343)
T ss_dssp HHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHH-TCSSCEEEEECHHH-----------HSSCC----CHHHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHH-hcCCCEEEEeCchh-----------cCcCC----CHHHHHH
Confidence 4 3344554 55543455555555544443 12345443 12210 02211 3333333
Q ss_pred HHHHhhhcCCCCcEEEEEecCChHHHHHhhhh
Q psy7785 473 LVNACKSFKLSIPLVVRLEGTNVQEGKRILDE 504 (525)
Q Consensus 473 ~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~ 504 (525)
.+++. .-=|-+|-.+.+...-.+++..
T Consensus 181 ---La~~~--pnIvgiKdssgd~~~~~~l~~~ 207 (343)
T 2v9d_A 181 ---LADSR--SNIIGIKDTIDSVAHLRSMIHT 207 (343)
T ss_dssp ---HHHHC--TTEEEEEECCSCHHHHHHHHHH
T ss_pred ---HHHhC--CCEEEEEeCCCCHHHHHHHHHh
Confidence 22231 2235577777777777777654
No 165
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=65.49 E-value=1.1e+02 Score=30.16 Aligned_cols=162 Identities=9% Similarity=0.118 Sum_probs=85.8
Q ss_pred CCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cChH---HHHHHHHHHHHhcCCCCcEEEEeCCcchHHH
Q psy7785 329 ANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNCA---TIAKGLVNACKSFKLSIPLVVRLEGTNVQEG 402 (525)
Q Consensus 329 aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~~---~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~ 402 (525)
--|.|=-|..+.+.+.+.++.+.+ .++|+++++-..|. ...+ .+.+..++.. +.+.||++..++++..++
T Consensus 16 vTPf~~dg~iD~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~---~grvpViaGvg~~~t~~a 91 (311)
T 3h5d_A 16 ITPFHEDGSINFDAIPALIEHLLA-HHTDGILLAGTTAESPTLTHDEELELFAAVQKVV---NGRVPLIAGVGTNDTRDS 91 (311)
T ss_dssp CCCBCTTSSBCTTHHHHHHHHHHH-TTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHS---CSSSCEEEECCCSSHHHH
T ss_pred ecCCCCCCCcCHHHHHHHHHHHHH-cCCCEEEECccccChhhCCHHHHHHHHHHHHHHh---CCCCcEEEeCCCcCHHHH
Confidence 345555677888889999998885 58999998654442 1222 3333333332 246899987666555555
Q ss_pred HH---HHhhCCC--------CccccCCHHHHHHHHHHhhcccCCCCeEE-EeCCCCHHHHHHHHHHCCCCeEEEcChhHH
Q psy7785 403 KR---ILDESKL--------PLIFASDLDEAASLVNACKSFKLSIPLVV-RLEGTNVQEGKRILDESKLPLIFASDLDEA 470 (525)
Q Consensus 403 ~~---~L~~~Gv--------pvf~~~s~~~Av~Al~~l~~~~~~~P~~~-~l~g~~e~eak~LL~ayGIpv~lA~s~deA 470 (525)
.+ ...+.|. |.|...+.+..++.+.+..+. ...|+.. ..|+. .|+.+ +.+..
T Consensus 92 i~la~~A~~~Ga~davlv~~P~y~~~s~~~l~~~f~~va~a-~~lPiilYn~P~~-----------tg~~l----~~~~~ 155 (311)
T 3h5d_A 92 IEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIADA-SDLPIIIYNIPGR-----------VVVEL----TPETM 155 (311)
T ss_dssp HHHHHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHHHHHS-CSSCEEEEECHHH-----------HSSCC----CHHHH
T ss_pred HHHHHHHHhcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHh-CCCCEEEEecccc-----------cCCCC----CHHHH
Confidence 43 4445553 555445666555555444431 2345443 22210 02221 33333
Q ss_pred HHHHHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHH
Q psy7785 471 ASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDE 517 (525)
Q Consensus 471 v~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (525)
.+ .+ +. .-=+-+|-.+ +...-.+++...+-.+.++.-.|+
T Consensus 156 ~~---La-~~--pnIvgiKdss-d~~~~~~~~~~~~~~f~v~~G~d~ 195 (311)
T 3h5d_A 156 LR---LA-DH--PNIIGVKECT-SLANMAYLIEHKPEEFLIYTGEDG 195 (311)
T ss_dssp HH---HH-TS--TTEEEEEECS-CHHHHHHHHHHCCSSCEEEECCGG
T ss_pred HH---Hh-cC--CCEEEEEeCC-CHHHHHHHHHHcCCCEEEEECcHH
Confidence 33 22 21 2235578777 777777777653323444544444
No 166
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=65.43 E-value=15 Score=37.49 Aligned_cols=62 Identities=13% Similarity=0.178 Sum_probs=39.0
Q ss_pred cCCcEEEEecchhHHH-------HHHHHHHHcCCCCC---Cee---eecCCCCHHHHHHHHHHHhcCCCccEEEEE
Q psy7785 300 MDGNIGCLVNGAGLAM-------ATMDIIKLHGGEPA---NFL---DVGGGVNEESIIQAFRIISSDSNVKCILVN 362 (525)
Q Consensus 300 ~~~rIaIitnsGG~gv-------laaD~~~~~Gl~~a---NPl---Dl~g~a~~~~~~~al~~ll~dp~vd~vlv~ 362 (525)
.|.+|+||+.|+|... .+...++..|+++. |-. .... .+.+.=.+-|..+..||+||+|+..
T Consensus 42 ~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~a-gtd~~Ra~dL~~af~Dp~i~aI~~~ 116 (371)
T 3tla_A 42 VGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRS-GTIKERAQEFNELVYNPDITCIMST 116 (371)
T ss_dssp TTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBS-SCHHHHHHHHHHHHTCTTEEEEEES
T ss_pred CcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccC-CCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 3679999999998642 45677888998541 111 1112 2333334445556689999998864
No 167
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=64.84 E-value=1.1e+02 Score=30.00 Aligned_cols=151 Identities=11% Similarity=0.160 Sum_probs=83.7
Q ss_pred CCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHHH
Q psy7785 329 ANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQEG 402 (525)
Q Consensus 329 aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~ 402 (525)
--|.|=-|..+.+.+.+.++.+.+. ++|+++++-..|. ... ..+.+..++... .+.||++..++....++
T Consensus 24 vTPf~~dg~iD~~~l~~lv~~li~~-Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~---grvpviaGvg~~~t~~a 99 (304)
T 3l21_A 24 VTPFSGDGSLDTATAARLANHLVDQ-GCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVG---DRARVIAGAGTYDTAHS 99 (304)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHHHT-TCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT---TTSEEEEECCCSCHHHH
T ss_pred ECCCCCCCCcCHHHHHHHHHHHHHc-CCCEEEeCccccchhhCCHHHHHHHHHHHHHHhC---CCCeEEEeCCCCCHHHH
Confidence 4556656788888899999998875 8999998644442 122 234444444433 36899887666555555
Q ss_pred HH---HHhhCCC-------CccccCCHHHHHHHHHHhhcccCCCCeEE-EeCCCCHHHHHHHHHHCCCCeEEEcChhHHH
Q psy7785 403 KR---ILDESKL-------PLIFASDLDEAASLVNACKSFKLSIPLVV-RLEGTNVQEGKRILDESKLPLIFASDLDEAA 471 (525)
Q Consensus 403 ~~---~L~~~Gv-------pvf~~~s~~~Av~Al~~l~~~~~~~P~~~-~l~g~~e~eak~LL~ayGIpv~lA~s~deAv 471 (525)
.+ ...+.|. |.|...+.+..++.+.+..+. ...|+.. ..|+. .|+++ +.+...
T Consensus 100 i~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a-~~lPiilYn~P~~-----------tg~~l----~~~~~~ 163 (304)
T 3l21_A 100 IRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADA-TELPMLLYDIPGR-----------SAVPI----EPDTIR 163 (304)
T ss_dssp HHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTS-CSSCEEEEECHHH-----------HSSCC----CHHHHH
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEeCccc-----------cCCCC----CHHHHH
Confidence 43 3445565 565445666655555554431 2345443 22210 02221 333333
Q ss_pred HHHHHhhhcCCCCcEEEEEecCChHHHHHhhhhC
Q psy7785 472 SLVNACKSFKLSIPLVVRLEGTNVQEGKRILDES 505 (525)
Q Consensus 472 ~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~ 505 (525)
+ .+ +. .-=+-+|-.+.+...-++++...
T Consensus 164 ~---La-~~--pnIvgiKdssgd~~~~~~~~~~~ 191 (304)
T 3l21_A 164 A---LA-SH--PNIVGVXDAKADLHSGAQIMADT 191 (304)
T ss_dssp H---HH-TS--TTEEEEEECSCCHHHHHHHHHHH
T ss_pred H---Hh-cC--CCEEEEECCCCCHHHHHHHhcCC
Confidence 3 23 21 22356788777887777776433
No 168
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=63.76 E-value=1e+02 Score=29.95 Aligned_cols=162 Identities=10% Similarity=0.147 Sum_probs=85.6
Q ss_pred eeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccccc---Ch---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHH
Q psy7785 331 FLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIV---NC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKR 404 (525)
Q Consensus 331 PlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~---~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~ 404 (525)
|.|=- ..+.+.+.+.++.+.+ .++|+++++-..|.. .. ..+.+..++... .+.||++..+++...++.+
T Consensus 14 Pf~~d-~iD~~~l~~lv~~li~-~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~---grvpviaGvg~~~t~~ai~ 88 (292)
T 3daq_A 14 PFTNN-KVNLEALKAHVNFLLE-NNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVD---KRVPVIAGTGTNDTEKSIQ 88 (292)
T ss_dssp CEETT-EECHHHHHHHHHHHHH-TTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHT---TSSCEEEECCCSCHHHHHH
T ss_pred CcCCC-CcCHHHHHHHHHHHHH-cCCCEEEECccccccccCCHHHHHHHHHHHHHHhC---CCCcEEEeCCcccHHHHHH
Confidence 44333 5666778888888885 589999986444421 12 234444444433 4689998766655555543
Q ss_pred ---HHhhCCC-------CccccCCHHHHHHHHHHhhcccCCCCeEE-EeCCCCHHHHHHHHHHCCCCeEEEcChhHHHHH
Q psy7785 405 ---ILDESKL-------PLIFASDLDEAASLVNACKSFKLSIPLVV-RLEGTNVQEGKRILDESKLPLIFASDLDEAASL 473 (525)
Q Consensus 405 ---~L~~~Gv-------pvf~~~s~~~Av~Al~~l~~~~~~~P~~~-~l~g~~e~eak~LL~ayGIpv~lA~s~deAv~~ 473 (525)
...+.|. |.|...+.+..++.+.+..+. ...|+.. ..|+. .|+.+ +.+...+
T Consensus 89 la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a-~~lPiilYn~P~~-----------tg~~l----~~~~~~~- 151 (292)
T 3daq_A 89 ASIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIADA-VKLPVVLYNVPSR-----------TNMTI----EPETVEI- 151 (292)
T ss_dssp HHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHH-HCSCEEEEECHHH-----------HSCCC----CHHHHHH-
T ss_pred HHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh-CCCCEEEEecccc-----------cCCCC----CHHHHHH-
Confidence 3444565 555444555544444443321 1344332 11110 02221 3343333
Q ss_pred HHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCC-CceeccCHHHHH
Q psy7785 474 VNACKSFKLSIPLVVRLEGTNVQEGKRILDESKL-PLIFASDLDEAA 519 (525)
Q Consensus 474 ~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 519 (525)
.+ +. .-=+-+|-.+.+...-+++++..+- .+.++.-.|+..
T Consensus 152 --La-~~--pnivgiK~ssgd~~~~~~~~~~~~~~~f~v~~G~d~~~ 193 (292)
T 3daq_A 152 --LS-QH--PYIVALKDATNDFEYLEEVKKRIDTNSFALYSGNDDNV 193 (292)
T ss_dssp --HH-TS--TTEEEEEECCCCHHHHHHHHTTSCTTTSEEEESCGGGH
T ss_pred --Hh-cC--CCEEEEEeCCCCHHHHHHHHHHCCCCCEEEEECCHHHH
Confidence 23 21 2236688888888888888876322 344555555443
No 169
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=63.64 E-value=1.1e+02 Score=29.69 Aligned_cols=168 Identities=13% Similarity=0.077 Sum_probs=91.5
Q ss_pred eeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cChHHHHHHHHHHHHh-cCCCCcEEEEeCCcchHHHHH--
Q psy7785 331 FLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNCATIAKGLVNACKS-FKLSIPLVVRLEGTNVQEGKR-- 404 (525)
Q Consensus 331 PlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~~~ia~~i~~a~~~-~~~~kPivv~~~g~~~~~~~~-- 404 (525)
|.|=-|..+.+.+.+.++.+.+. ++|+++++-..|. ...++-. .+++...+ .+.+.||++..++....++.+
T Consensus 14 Pf~~dg~iD~~~l~~lv~~li~~-Gv~gl~~~GttGE~~~Ls~~Er~-~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la 91 (294)
T 3b4u_A 14 PFKTDGTVDIDAMIAHARRCLSN-GCDSVTLFGTTGEGCSVGSRERQ-AILSSFIAAGIAPSRIVTGVLVDSIEDAADQS 91 (294)
T ss_dssp CBCTTSSBCHHHHHHHHHHHHHT-TCSEEEESSTTTTGGGSCHHHHH-HHHHHHHHTTCCGGGEEEEECCSSHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHHHc-CCCEEEECccccChhhCCHHHHH-HHHHHHHHHhCCCCcEEEeCCCccHHHHHHHH
Confidence 44445788888899999998875 8999998644442 1222222 22333222 123589988777655555543
Q ss_pred -HHhhCCC-------Ccccc-CCHHHHHHHHHHhhcccC--CCCeEE-EeCCCCHHHHHHHHHHCCCCeEEEcChhHHHH
Q psy7785 405 -ILDESKL-------PLIFA-SDLDEAASLVNACKSFKL--SIPLVV-RLEGTNVQEGKRILDESKLPLIFASDLDEAAS 472 (525)
Q Consensus 405 -~L~~~Gv-------pvf~~-~s~~~Av~Al~~l~~~~~--~~P~~~-~l~g~~e~eak~LL~ayGIpv~lA~s~deAv~ 472 (525)
...+.|. |.|.. .+.+..++.+.+..+... ..|+.. ..++. .|+.+ +.+...+
T Consensus 92 ~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiilYn~P~~-----------tg~~l----~~~~~~~ 156 (294)
T 3b4u_A 92 AEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILVYNIPSV-----------TMVTL----SVELVGR 156 (294)
T ss_dssp HHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEEEECHHH-----------HSCCC----CHHHHHH
T ss_pred HHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEEEECcch-----------hCcCC----CHHHHHH
Confidence 3345565 55544 455555555444433111 344433 12110 02221 3444444
Q ss_pred HHHHhhhcCCCC-cEEEEEecCChHHHHHhhhhCCCCceeccCHHHHHHH
Q psy7785 473 LVNACKSFKLSI-PLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAANW 521 (525)
Q Consensus 473 ~~~aa~~~~~G~-PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (525)
.+++. .- =+-+|-.+.+...-.+++...+ .+.++.-.|+....
T Consensus 157 ---La~~~--pn~ivgiKds~gd~~~~~~~~~~~~-~f~v~~G~d~~~l~ 200 (294)
T 3b4u_A 157 ---LKAAF--PGIVTGVKDSSGNWSHTERLLKEHG-DLAILIGDERDLAR 200 (294)
T ss_dssp ---HHHHC--TTTEEEEEECCCCHHHHHHHHHHHT-TSEEEECCHHHHHH
T ss_pred ---HHHhC--CCcEEEEEECCCCHHHHHHHHHhCC-CeEEEEccHHHHHH
Confidence 23231 33 4568988889988888887633 56667666665443
No 170
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=63.40 E-value=55 Score=29.15 Aligned_cols=121 Identities=13% Similarity=0.165 Sum_probs=73.4
Q ss_pred CCcEEEEecc------hhHHHHHHHHHHHcC-CCCCCee--eecCCCCHHHHHHHHHHHhcCCCccEEEEEe--c-cccc
Q psy7785 301 DGNIGCLVNG------AGLAMATMDIIKLHG-GEPANFL--DVGGGVNEESIIQAFRIISSDSNVKCILVNV--F-GGIV 368 (525)
Q Consensus 301 ~~rIaIitns------GG~gvlaaD~~~~~G-l~~aNPl--Dl~g~a~~~~~~~al~~ll~dp~vd~vlv~~--~-~~~~ 368 (525)
+-||+||... ..+---+.|.+.++| .+..|.- .+-|... +.-+.+.+.+...+|+++..- . |+..
T Consensus 12 ~~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGafE---iP~aa~~la~~~~yDavIaLG~VIrG~T~ 88 (156)
T 3nq4_A 12 DARVAITIARFNQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYE---LPLATEALAKSGKYDAVVALGTVIRGGTA 88 (156)
T ss_dssp TCCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCCTTSEEEEEESSTTT---HHHHHHHHHHHCSCSEEEEEEEEECCSST
T ss_pred CCEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCcccceEEEEcCcHHH---HHHHHHHHHhcCCCCEEEEeeeeecCCch
Confidence 3478887643 244555789999999 8766653 3344322 455667777778899999742 2 3332
Q ss_pred ----ChHHHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhc
Q psy7785 369 ----NCATIAKGLVNACKSFKLSIPLVVRLEG-TNVQEGKRILDESKLPLIFASDLDEAASLVNACKS 431 (525)
Q Consensus 369 ----~~~~ia~~i~~a~~~~~~~kPivv~~~g-~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~ 431 (525)
.|..++++|.+..-+ +++||...... .+.+++. .+.|.-.- .--.+|+.+...+.+
T Consensus 89 Hfd~Va~~v~~Gl~~v~L~--~~vPV~~GVLT~~~~eQA~---~Rag~~~~--nKG~eaA~aalem~~ 149 (156)
T 3nq4_A 89 HFEYVAGGASNGLASVAQD--SGVPVAFGVLTTESIEQAI---ERAGTKAG--NKGAEAALTALEMIN 149 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCCCEEEEEEEESCHHHHH---HHBTSTTC--BHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc--cCCCEEEEEeCCCCHHHHH---HHhCCccc--ccHHHHHHHHHHHHH
Confidence 345667788877666 68999865433 3444443 34443222 345666666666554
No 171
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=61.18 E-value=20 Score=36.00 Aligned_cols=64 Identities=11% Similarity=0.089 Sum_probs=39.4
Q ss_pred ccCCcEEEEecchhHHH-------HHHHHHHHcCCCCCCe---eeecC--CCCHHHHHHHHHHHhcCCCccEEEEE
Q psy7785 299 GMDGNIGCLVNGAGLAM-------ATMDIIKLHGGEPANF---LDVGG--GVNEESIIQAFRIISSDSNVKCILVN 362 (525)
Q Consensus 299 ~~~~rIaIitnsGG~gv-------laaD~~~~~Gl~~aNP---lDl~g--~a~~~~~~~al~~ll~dp~vd~vlv~ 362 (525)
+.|.+|+||+.|+|... .+...++..|+++... ..-.+ ..+.+.=.+-|..+..||+||+|+..
T Consensus 11 ~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~ 86 (336)
T 3sr3_A 11 KYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMST 86 (336)
T ss_dssp CTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEES
T ss_pred CCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 34679999999998742 3567788889864211 11101 22333333445556679999998864
No 172
>2r7k_A 5-formaminoimidazole-4-carboxamide-1-(beta)-D- ribofuranosyl 5'-monophosphate synthetase...; ATP-grAsp superfamily, ATP-binding; HET: ACP AMZ; 2.10A {Methanocaldococcus jannaschii} SCOP: c.30.1.8 d.142.1.9 PDB: 2r7l_A* 2r7m_A* 2r7n_A*
Probab=60.57 E-value=7.1 Score=39.74 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=26.9
Q ss_pred HHHHHHHHCCCCe-EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCCh
Q psy7785 449 EGKRILDESKLPL-IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNV 495 (525)
Q Consensus 449 eak~LL~ayGIpv-~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~ 495 (525)
..|++|+.+|||+ ..+.+.+++ +||||+|-.+..-
T Consensus 127 ~~k~~l~~~GIptp~~~~~~~e~------------~~PvVVK~~~~a~ 162 (361)
T 2r7k_A 127 LEGKLLREAGLRVPKKYESPEDI------------DGTVIVKFPGARG 162 (361)
T ss_dssp HHHHHHHHTTCCCCCEESSGGGC------------CSCEEEECSCCCC
T ss_pred HHHHHHHHcCcCCCCEeCCHHHc------------CCCEEEeeCCCCC
Confidence 4678999999999 556665532 6999999987653
No 173
>2p0a_A Synapsin-3, synapsin III; neurotransmitter release, schizophrenia, vesicle T structural genomics, structural genomics consortium, SGC, neuropeptide; HET: ANP; 1.90A {Homo sapiens}
Probab=59.66 E-value=3.8 Score=41.62 Aligned_cols=67 Identities=18% Similarity=0.174 Sum_probs=39.6
Q ss_pred HHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCC---Ce---EEEcChhHHHHHHH
Q psy7785 402 GKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKL---PL---IFASDLDEAASLVN 475 (525)
Q Consensus 402 ~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGI---pv---~lA~s~deAv~~~~ 475 (525)
..+.|+..|+|++ ++++....+--+.+- -....++|...|+ |+ ....+..++
T Consensus 107 vl~~le~~Gvpvi--N~~~sI~~~~DK~~v---------------~~~~l~~l~~~gi~~~P~~~~t~~~~~~~~----- 164 (344)
T 2p0a_A 107 LVIGLQYGGLPAV--NSLYSVYNFCSKPWV---------------FSQLIKIFHSLGPEKFPLVEQTFFPNHKPM----- 164 (344)
T ss_dssp HHHHHHHTTCCEE--SCHHHHHHTTCHHHH---------------HHHHHHHHHHHCTTTSCBCCCEEESSSTTC-----
T ss_pred HHHHHHHCCceec--CCHHHHHhhCCchHH---------------HHHHHHHHHHCCCCCCCCCCEEecCchhhh-----
Confidence 3556888999999 775432222111000 0235667888888 85 445555442
Q ss_pred HhhhcCCCCcEEEEEecC
Q psy7785 476 ACKSFKLSIPLVVRLEGT 493 (525)
Q Consensus 476 aa~~~~~G~PVVlKi~~~ 493 (525)
.+. .|||||+|....
T Consensus 165 -~~~--~g~PvVvK~~~G 179 (344)
T 2p0a_A 165 -VTA--PHFPVVVKLGHA 179 (344)
T ss_dssp -CCC--SSSSEEEEESSC
T ss_pred -hhc--cCCCEEEEeCCC
Confidence 334 499999998653
No 174
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Probab=59.16 E-value=43 Score=41.80 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=77.2
Q ss_pred cCCCCHHHHHHHHHHHhcCCC-ccEEEEEecccccChHHHHHHHHHHHHhcCCCCcE--EEEeCCc-chHHHHHHHhhCC
Q psy7785 335 GGGVNEESIIQAFRIISSDSN-VKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPL--VVRLEGT-NVQEGKRILDESK 410 (525)
Q Consensus 335 ~g~a~~~~~~~al~~ll~dp~-vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPi--vv~~~g~-~~~~~~~~L~~~G 410 (525)
.|..+.+.+.+.++.+.+.-. -..+.+|.+............+++.+.+ .+.|+ +....|. ..++..+.+++.|
T Consensus 615 ~g~~~~e~l~~~i~~vk~~~~~~~p~gvN~~~~~p~~~~~~~~~~~~~~~--~gv~i~gv~~~~G~p~~e~~~~~l~~~g 692 (2060)
T 2uva_G 615 GGYYNAQKMSDAISKIEKAIPPGRGITVNLIYVNPRAMGWQIPLLGRLRA--DGVPIEGLTIGAGVPSIEVANEYIQTLG 692 (2060)
T ss_dssp GGCCSHHHHHHHHHHHGGGSCTTCCEEEEEETTCTTHHHHHHHHHHHHHT--TTCCEEEEEEESSCCCHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHhhcccCCCeEecccccCcccchhHHHHHHHHHH--cCCCcceEeecCCCCCHHHHHHHHHHcC
Confidence 345567888888888766421 1234455432211212112344555555 57888 7666664 4456788999999
Q ss_pred CCccc-cCCHHHHHHHHHHhhcccCCCCeEEEeCC------CC--------HHHHHHHHHHCCCCeEEEc---ChhHHHH
Q psy7785 411 LPLIF-ASDLDEAASLVNACKSFKLSIPLVVRLEG------TN--------VQEGKRILDESKLPLIFAS---DLDEAAS 472 (525)
Q Consensus 411 vpvf~-~~s~~~Av~Al~~l~~~~~~~P~~~~l~g------~~--------e~eak~LL~ayGIpv~lA~---s~deAv~ 472 (525)
++++. +.+..+|..++.++.+......++...+| .+ ...-.++.+..+||+..+. |.+.+.+
T Consensus 693 i~~i~~v~~~~~a~~~v~~l~~aG~D~iV~~q~~G~eaGGH~g~~d~~~~~l~lv~~i~~~~~ipviaaGGI~~g~~i~a 772 (2060)
T 2uva_G 693 IRHISFKPGSVDAIQQVINIAKANPTFPIILQWTGGRGGGHHSFEDFHQPILLMYSRIRKCSNIVLVAGSGFGGSEDTYP 772 (2060)
T ss_dssp CSEEEECCCSHHHHHHHHHHHHHCTTSCEEEEECCTTSSSSCCSCCSHHHHHHHHHHHHTSTTEEEEEESSCCSHHHHHH
T ss_pred CeEEEecCCHHHHHHHHHHHHHcCCCEEEEeeeEcccCCCCCCcccccchHHHHHHHHHHHcCCCEEEeCCCCCHHHHHH
Confidence 99987 67778888776655543333333222221 11 1134566677789985444 4444444
No 175
>2hfv_A Hypothetical protein RPA1041; NESG, GFT-alpha+beta, structural genomics, PSI-2, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: d.58.5.5
Probab=59.12 E-value=8.1 Score=31.81 Aligned_cols=55 Identities=18% Similarity=0.214 Sum_probs=40.0
Q ss_pred HHHHHHHHCCCCeEEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCc
Q psy7785 449 EGKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL 509 (525)
Q Consensus 449 eak~LL~ayGIpv~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~ 509 (525)
-++.+|.+.||++.+.+.-- .. +..++ +-+|+++.+.....++||+||++.++..
T Consensus 37 ~~k~LLe~aGI~~fv~De~m---s~--~~GeI-g~~P~rwlV~eed~~~Ar~LL~~~~~~~ 91 (97)
T 2hfv_A 37 AVGALLDGADIGHLVLDQNM---SI--LEGSL-GVIPRRVLVHEDDLAGARRLLTDAGLAH 91 (97)
T ss_dssp HHHHHHHHTTCCEECCSCCC---CS--SSCCS-SSSCEEEEEEGGGHHHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCCEEEcCCcc---hh--hcCcc-ccCcEEEEEChhhHHHHHHHHHHcCCcc
Confidence 48899999999994443211 10 23343 1369999999999999999999987654
No 176
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=59.10 E-value=10 Score=38.10 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=39.6
Q ss_pred ccCCcEEEEecchhHH-------HHHHHHHHHcCCCCC---CeeeecC--CCCHHHHHHHHHHHhcCCCccEEEEE
Q psy7785 299 GMDGNIGCLVNGAGLA-------MATMDIIKLHGGEPA---NFLDVGG--GVNEESIIQAFRIISSDSNVKCILVN 362 (525)
Q Consensus 299 ~~~~rIaIitnsGG~g-------vlaaD~~~~~Gl~~a---NPlDl~g--~a~~~~~~~al~~ll~dp~vd~vlv~ 362 (525)
+.|.+|+||+.|++.. -.+...++..|+++. |-..-.+ ..+.+.=.+-|..+..||+||+|+..
T Consensus 10 ~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~ 85 (331)
T 4e5s_A 10 KKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTT 85 (331)
T ss_dssp CTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEES
T ss_pred CCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 3467999999999964 135677888998542 1111111 12333334445556689999998864
No 177
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=58.95 E-value=1.3e+02 Score=29.22 Aligned_cols=147 Identities=13% Similarity=0.153 Sum_probs=77.5
Q ss_pred eeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHH
Q psy7785 331 FLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKR 404 (525)
Q Consensus 331 PlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~ 404 (525)
|.|=-| .+.+.+.+.++.+.+. ++|+++++-..|. ... ..+.+..++... .+.||++..++++..++.+
T Consensus 13 Pf~~dg-iD~~~l~~lv~~li~~-Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~---gr~pvi~Gvg~~~t~~ai~ 87 (291)
T 3a5f_A 13 PFTNTG-VDFDKLSELIEWHIKS-KTDAIIVCGTTGEATTMTETERKETIKFVIDKVN---KRIPVIAGTGSNNTAASIA 87 (291)
T ss_dssp CBCSSS-BCHHHHHHHHHHHHHT-TCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHT---TSSCEEEECCCSSHHHHHH
T ss_pred CcCCCC-cCHHHHHHHHHHHHHc-CCCEEEECccccChhhCCHHHHHHHHHHHHHHhC---CCCcEEEeCCcccHHHHHH
Confidence 444346 7888899999988874 8999998644432 122 234444444433 3689988776655555543
Q ss_pred ---HHhhCCC-------CccccCCHHHHHHHHHHhhcccCCCCeEE-EeCCCCHHHHHHHHHHCCCCeEEEcChhHHHHH
Q psy7785 405 ---ILDESKL-------PLIFASDLDEAASLVNACKSFKLSIPLVV-RLEGTNVQEGKRILDESKLPLIFASDLDEAASL 473 (525)
Q Consensus 405 ---~L~~~Gv-------pvf~~~s~~~Av~Al~~l~~~~~~~P~~~-~l~g~~e~eak~LL~ayGIpv~lA~s~deAv~~ 473 (525)
...+.|. |.|...+.+...+.+.+..+ ....|+.. ..|+. .|+.+ +.+...+
T Consensus 88 la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~-a~~lPiilYn~P~~-----------tg~~l----~~~~~~~- 150 (291)
T 3a5f_A 88 MSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSD-AVSTPIIIYNVPGR-----------TGLNI----TPGTLKE- 150 (291)
T ss_dssp HHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGG-GCCSCEEEEECHHH-----------HSCCC----CHHHHHH-
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHH-hcCCCEEEEeCccc-----------cCCCC----CHHHHHH-
Confidence 3445665 55543455554444433332 12345443 22210 02211 3333333
Q ss_pred HHHhhhcCCCCcEEEEEecCChHHHHHhhhh
Q psy7785 474 VNACKSFKLSIPLVVRLEGTNVQEGKRILDE 504 (525)
Q Consensus 474 ~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~ 504 (525)
.+ +. .-=+-+|-.+.+...-.+++..
T Consensus 151 --La-~~--pnivgiK~s~gd~~~~~~~~~~ 176 (291)
T 3a5f_A 151 --LC-ED--KNIVAVXEASGNISQIAQIKAL 176 (291)
T ss_dssp --HT-TS--TTEEEEEECSCCHHHHHHHHHH
T ss_pred --HH-cC--CCEEEEeCCCCCHHHHHHHHHh
Confidence 22 21 2224578777777777777664
No 178
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=58.87 E-value=42 Score=31.80 Aligned_cols=61 Identities=8% Similarity=0.086 Sum_probs=42.6
Q ss_pred CcEEEEecchhH-HHHHHHHHHHcCCCCCCeeeec-------CCCCHHHHHHHHHH-HhcCCCccEEEEE
Q psy7785 302 GNIGCLVNGAGL-AMATMDIIKLHGGEPANFLDVG-------GGVNEESIIQAFRI-ISSDSNVKCILVN 362 (525)
Q Consensus 302 ~rIaIitnsGG~-gvlaaD~~~~~Gl~~aNPlDl~-------g~a~~~~~~~al~~-ll~dp~vd~vlv~ 362 (525)
+|||++|.-.-. .-...+.+++.|+++-.|.... |..+++.+.+.++. +..++++|+|++.
T Consensus 118 ~rvglltpy~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adaivL~ 187 (240)
T 3ixl_A 118 RRVALATAYIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGILLS 187 (240)
T ss_dssp SEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEEEE
T ss_pred CEEEEEeCChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEEEEe
Confidence 689999985543 2345578889998654443221 34566778888888 4378899999985
No 179
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=57.60 E-value=16 Score=34.77 Aligned_cols=58 Identities=28% Similarity=0.374 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHhcCCCccEEEEEe--cccc-cChHHHHHHHHHHHHhcCCCCcEEEEeCC
Q psy7785 337 GVNEESIIQAFRIISSDSNVKCILVNV--FGGI-VNCATIAKGLVNACKSFKLSIPLVVRLEG 396 (525)
Q Consensus 337 ~a~~~~~~~al~~ll~dp~vd~vlv~~--~~~~-~~~~~ia~~i~~a~~~~~~~kPivv~~~g 396 (525)
..+.+.+.++++.+.+|+++.+|++.+ +++. .....+.+.+.+..+. .+||+++...|
T Consensus 28 ~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~i~~~l~~~~~~--~~kPVia~v~g 88 (240)
T 3rst_A 28 GYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIHKKLEEIKKE--TKKPIYVSMGS 88 (240)
T ss_dssp CCCHHHHHHHHHHHHHCTTEEEEEEEEEECCBCHHHHHHHHHHHHHHHHH--HCCCEEEEEEE
T ss_pred CcCHHHHHHHHHHHHhCCCcEEEEEEecCCCCCHHHHHHHHHHHHHHHHh--CCCeEEEEECC
Confidence 345677999999999999999999843 3332 2234444444443331 37999876544
No 180
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=56.97 E-value=1.5e+02 Score=28.95 Aligned_cols=162 Identities=14% Similarity=0.185 Sum_probs=86.7
Q ss_pred CeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHH
Q psy7785 330 NFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGK 403 (525)
Q Consensus 330 NPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~ 403 (525)
-|.|=-|..+.+.+.+.++-+.+. ++|+++++-..|. ... ..+.+..++... .+.||++..++++..++.
T Consensus 21 TPF~~dg~iD~~~l~~lv~~li~~-Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~---grvpViaGvg~~~t~~ai 96 (303)
T 2wkj_A 21 TPFDQQQALDKASLRRLVQFNIQQ-GIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAK---GKIKLIAHVGCVSTAESQ 96 (303)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHHT-TCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT---TTSEEEEECCCSSHHHHH
T ss_pred cCCCCCCCcCHHHHHHHHHHHHHc-CCCEEEECeeccChhhCCHHHHHHHHHHHHHHhC---CCCcEEEecCCCCHHHHH
Confidence 345445788888899999998874 8999998644432 122 234444444433 368898876665555554
Q ss_pred H---HHhhCCC-------CccccCCHHHHHHHHHHhhcccCC-CCeEE-EeCCCCHHHHHHHHHHCCCCeEEEcChhHHH
Q psy7785 404 R---ILDESKL-------PLIFASDLDEAASLVNACKSFKLS-IPLVV-RLEGTNVQEGKRILDESKLPLIFASDLDEAA 471 (525)
Q Consensus 404 ~---~L~~~Gv-------pvf~~~s~~~Av~Al~~l~~~~~~-~P~~~-~l~g~~e~eak~LL~ayGIpv~lA~s~deAv 471 (525)
+ ...+.|. |.|...+.+..++.+.+..+. .. .|+.. ..|+. .|+.+ +.+...
T Consensus 97 ~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a-~~~lPiilYn~P~~-----------tg~~l----~~~~~~ 160 (303)
T 2wkj_A 97 QLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDS-ADGLPMVVYNIPAL-----------SGVKL----TLDQIN 160 (303)
T ss_dssp HHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHH-HTTCCEEEEECHHH-----------HCCCC----CHHHHH
T ss_pred HHHHHHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHHHh-CCCCCEEEEeCccc-----------cCCCC----CHHHHH
Confidence 3 3344554 555434555544444443321 12 44332 11110 02211 333333
Q ss_pred HHHHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHHH
Q psy7785 472 SLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEA 518 (525)
Q Consensus 472 ~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (525)
+ .+ +. .-=+-+|-.+.+...-.+++.. +..+.++.-.|+.
T Consensus 161 ~---La-~~--pnIvgiK~s~gd~~~~~~~~~~-~~~f~v~~G~d~~ 200 (303)
T 2wkj_A 161 T---LV-TL--PGVGALXQTSGDLYQMEQIRRE-HPDLVLYNGYDNI 200 (303)
T ss_dssp H---HH-TS--TTEEEEEECCCCHHHHHHHHHH-CTTCEEEECCGGG
T ss_pred H---Hh-cC--CCEEEEeCCCCCHHHHHHHHHh-CCCeEEEeCcHHH
Confidence 3 23 21 2236688888888888887765 2245556544443
No 181
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=54.19 E-value=62 Score=28.74 Aligned_cols=119 Identities=18% Similarity=0.186 Sum_probs=71.8
Q ss_pred CcEEEEecc------hhHHHHHHHHHHHcCCCCCCee--eecCCCCHHHHHHHHHHHhcCCCccEEEEEe--c-cccc--
Q psy7785 302 GNIGCLVNG------AGLAMATMDIIKLHGGEPANFL--DVGGGVNEESIIQAFRIISSDSNVKCILVNV--F-GGIV-- 368 (525)
Q Consensus 302 ~rIaIitns------GG~gvlaaD~~~~~Gl~~aNPl--Dl~g~a~~~~~~~al~~ll~dp~vd~vlv~~--~-~~~~-- 368 (525)
-||||+... ..+---+.|.+.++|.+..|.- .+-|. -.+.-+.+.|.+..++|+++..- . |+..
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGa---fEiP~aa~~la~~~~yDavIalG~VIrG~T~Hf 89 (154)
T 1hqk_A 13 LRFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGS---WEIPVAAGELARKEDIDAVIAIGVLIRGATPHF 89 (154)
T ss_dssp CCEEEEEECTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSG---GGHHHHHHHHHTCTTCCEEEEEEEEECCSSTHH
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcH---HHHHHHHHHHHhcCCCCEEEEeeeeecCCchHH
Confidence 478887653 2455557799999998766543 23332 22556778888888999999742 2 3332
Q ss_pred --ChHHHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHhhCCCCccccCCHHHHHHHHHHhh
Q psy7785 369 --NCATIAKGLVNACKSFKLSIPLVVRLEG-TNVQEGKRILDESKLPLIFASDLDEAASLVNACK 430 (525)
Q Consensus 369 --~~~~ia~~i~~a~~~~~~~kPivv~~~g-~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~ 430 (525)
.|..++++|.++.-+ +++||...... .+.+++.. +.|...- +--.+|+.++..+.
T Consensus 90 d~Va~~vs~gl~~v~l~--~~vPV~~GVLT~~~~eQA~~---Rag~~~~--nkG~eaA~aalem~ 147 (154)
T 1hqk_A 90 DYIASEVSKGLANLSLE--LRKPITFGVITADTLEQAIE---RAGTKHG--NKGWEAALSAIEMA 147 (154)
T ss_dssp HHHHHHHHHHHHHHHHH--HTSCEEEEEEEESSHHHHHH---HEEETTE--EHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh--cCCCEEEEEeCCCCHHHHHH---Hhccccc--chHHHHHHHHHHHH
Confidence 245667788877665 68999865333 34455543 3343222 33455666655554
No 182
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=54.04 E-value=1.6e+02 Score=28.47 Aligned_cols=92 Identities=7% Similarity=0.048 Sum_probs=54.4
Q ss_pred cCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHH---H
Q psy7785 335 GGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKR---I 405 (525)
Q Consensus 335 ~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~---~ 405 (525)
-|..+.+.+.+.++.+.+. ++|+++++-..|. ... ..+.+..++... .+.||++..+++...++.+ .
T Consensus 15 dg~iD~~~l~~lv~~li~~-Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~---gr~pviaGvg~~~t~~ai~la~~ 90 (292)
T 2vc6_A 15 DDRIDEVALHDLVEWQIEE-GSFGLVPCGTTGESPTLSKSEHEQVVEITIKTAN---GRVPVIAGAGSNSTAEAIAFVRH 90 (292)
T ss_dssp TTEECHHHHHHHHHHHHHT-TCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHT---TSSCBEEECCCSSHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHc-CCCEEEECccccChhhCCHHHHHHHHHHHHHHhC---CCCcEEEecCCccHHHHHHHHHH
Confidence 4677788899999988875 8999997543332 122 234444444433 3689988776655555543 3
Q ss_pred HhhCCC-------CccccCCHHHHHHHHHHhh
Q psy7785 406 LDESKL-------PLIFASDLDEAASLVNACK 430 (525)
Q Consensus 406 L~~~Gv-------pvf~~~s~~~Av~Al~~l~ 430 (525)
..+.|. |.|...+.+..++.+.+..
T Consensus 91 A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia 122 (292)
T 2vc6_A 91 AQNAGADGVLIVSPYYNKPTQEGIYQHFKAID 122 (292)
T ss_dssp HHHTTCSEEEEECCCSSCCCHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHH
Confidence 445565 5553345555555444443
No 183
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=52.58 E-value=60 Score=28.82 Aligned_cols=119 Identities=18% Similarity=0.208 Sum_probs=71.8
Q ss_pred CcEEEEecc------hhHHHHHHHHHHHcCCCCCCee--eecCCCCHHHHHHHHHHHhcCCCccEEEEEe--c-cccc--
Q psy7785 302 GNIGCLVNG------AGLAMATMDIIKLHGGEPANFL--DVGGGVNEESIIQAFRIISSDSNVKCILVNV--F-GGIV-- 368 (525)
Q Consensus 302 ~rIaIitns------GG~gvlaaD~~~~~Gl~~aNPl--Dl~g~a~~~~~~~al~~ll~dp~vd~vlv~~--~-~~~~-- 368 (525)
-||||+... ..+---+.|.+.++|.+..|.- .+-|. -.+.-+.+.+.+..++|+++..- . |+..
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGa---fEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hf 89 (154)
T 1rvv_A 13 LKIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGA---FEIPFAAKKMAETKKYDAIITLGTVIRGATTHY 89 (154)
T ss_dssp CCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSG---GGHHHHHHHHHHTSCCSEEEEEEEEECCSSSHH
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcH---HHHHHHHHHHHhcCCCCEEEEeeeeecCCchHH
Confidence 478887653 2455557799999998766543 23332 22556778888888999999742 2 3332
Q ss_pred --ChHHHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHhhCCCCccccCCHHHHHHHHHHhh
Q psy7785 369 --NCATIAKGLVNACKSFKLSIPLVVRLEG-TNVQEGKRILDESKLPLIFASDLDEAASLVNACK 430 (525)
Q Consensus 369 --~~~~ia~~i~~a~~~~~~~kPivv~~~g-~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~ 430 (525)
.|..++++|.++.-+ +++||...... .+.+++.. +.|...- +--.+|+.++..+.
T Consensus 90 d~V~~~vs~Gl~~v~l~--~~vPV~~GVLT~~~~eQA~~---Rag~~~~--nkG~eaA~aalem~ 147 (154)
T 1rvv_A 90 DYVCNEAAKGIAQAANT--TGVPVIFGIVTTENIEQAIE---RAGTKAG--NKGVDCAVSAIEMA 147 (154)
T ss_dssp HHHHHHHHHHHHHHHHH--HCSCEEEEEEEESSHHHHHH---TEEETTE--EHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh--hCCCEEEEecCCCCHHHHHH---Hhccccc--chHHHHHHHHHHHH
Confidence 245667788887666 68999865333 34455433 3343222 33455666665554
No 184
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=51.90 E-value=15 Score=35.92 Aligned_cols=59 Identities=14% Similarity=0.305 Sum_probs=37.2
Q ss_pred HHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe-EEEcChhHHHHHHHHhhhcC
Q psy7785 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL-IFASDLDEAASLVNACKSFK 481 (525)
Q Consensus 403 ~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv-~lA~s~deAv~~~~aa~~~~ 481 (525)
...|+..|+|++ .++ +++.... +-...+++|+++|||+ ..+.+.+ ++
T Consensus 78 ~~~le~~g~~~~--~~~-~~~~~~~------------------dK~~~~~~l~~~gip~p~~~~~~~----------~l- 125 (334)
T 2r85_A 78 IELVENMKVPYF--GNK-RVLRWES------------------DRNLERKWLKKAGIRVPEVYEDPD----------DI- 125 (334)
T ss_dssp HHHHHTCCSCBB--SCT-THHHHHH------------------SHHHHHHHHHHTTCCCCCBCSCGG----------GC-
T ss_pred HHHHHHcCCCcc--CCH-HHHHHHH------------------hHHHHHHHHHHcCCCCCCccCChH----------Hc-
Confidence 445678899988 554 3332221 1235789999999998 3244433 33
Q ss_pred CCCcEEEEEecCC
Q psy7785 482 LSIPLVVRLEGTN 494 (525)
Q Consensus 482 ~G~PVVlKi~~~~ 494 (525)
+||+|+|-....
T Consensus 126 -~~P~vvKP~~g~ 137 (334)
T 2r85_A 126 -EKPVIVKPHGAK 137 (334)
T ss_dssp -CSCEEEEECC--
T ss_pred -CCCEEEEeCCCC
Confidence 799999986644
No 185
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=51.72 E-value=48 Score=30.60 Aligned_cols=112 Identities=15% Similarity=0.112 Sum_probs=56.3
Q ss_pred CcEEEEecchhHHHHH--HHHHHHcCCC---------CCCee-ee---cCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 302 GNIGCLVNGAGLAMAT--MDIIKLHGGE---------PANFL-DV---GGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 302 ~rIaIitnsGG~gvla--aD~~~~~Gl~---------~aNPl-Dl---~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
..+.||| ||+.|+|. ++.+.+.|+. ..|+- |+ ++.-. .-++.+ +.+ .-|++++ .+++
T Consensus 57 ~G~~vVs-Gg~~GiM~aa~~gAl~~GG~~iGVlP~e~~~~~~~~~~~~~~~~f--~~Rk~~--m~~--~sda~Iv-lpGG 128 (195)
T 1rcu_A 57 KGYLVFN-GGRDGVMELVSQGVREAGGTVVGILPDEEAGNPYLSVAVKTGLDF--QMRSFV--LLR--NADVVVS-IGGE 128 (195)
T ss_dssp TTCEEEE-CCSSHHHHHHHHHHHHTTCCEEEEESTTCCCCTTCSEEEECCCCH--HHHHHH--HHT--TCSEEEE-ESCC
T ss_pred CCCEEEe-CCHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCcceeeecCCCH--HHHHHH--HHH--hCCEEEE-ecCC
Confidence 4688998 78999885 4788887763 12331 21 11111 112322 222 2455554 4555
Q ss_pred ccChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHH-HHHHHhhCC-C------C-ccccCCHHHHHHHHHHh
Q psy7785 367 IVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQE-GKRILDESK-L------P-LIFASDLDEAASLVNAC 429 (525)
Q Consensus 367 ~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~-~~~~L~~~G-v------p-vf~~~s~~~Av~Al~~l 429 (525)
.-..+++.+. .. .+|||++.- ++.... ..+.+.+.| + - +..++++++++..+.++
T Consensus 129 ~GTL~E~~ea----l~---~~kPV~lln-~~g~w~~~l~~~~~~G~fi~~~~~~~i~~~~~~ee~~~~l~~~ 192 (195)
T 1rcu_A 129 IGTAIEILGA----YA---LGKPVILLR-GTGGWTDRISQVLIDGKYLDNRRIVEIHQAWTVEEAVQIIEQI 192 (195)
T ss_dssp HHHHHHHHHH----HH---TTCCEEEET-TSCHHHHHGGGGCBTTTBSSTTCCSCEEEESSHHHHHHHHHTC
T ss_pred CcHHHHHHHH----Hh---cCCCEEEEC-CCCccHHHHHHHHHcCCcCCHHHcCeEEEeCCHHHHHHHHHHH
Confidence 3323444433 22 479998752 221222 223333344 1 1 22258999999887643
No 186
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=51.44 E-value=97 Score=28.34 Aligned_cols=119 Identities=14% Similarity=0.105 Sum_probs=59.7
Q ss_pred CcEEEEecchhHHHH--HHHHHHHcCCC-------------CCCe-eeecCCCCHHHHHHHHHHHhcCCCccEEEEEecc
Q psy7785 302 GNIGCLVNGAGLAMA--TMDIIKLHGGE-------------PANF-LDVGGGVNEESIIQAFRIISSDSNVKCILVNVFG 365 (525)
Q Consensus 302 ~rIaIitnsGG~gvl--aaD~~~~~Gl~-------------~aNP-lDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~ 365 (525)
.++.+||-||..|+| ++|.+.+.|+. ..|| +|..=....-.-++.+-.-.+ |+ +|..++
T Consensus 43 ~g~~lv~GGG~~GlM~a~~~ga~~~GG~viGv~p~~l~~~e~~~~~~~~~i~~~~~~~Rk~~m~~~s----da-~IalPG 117 (189)
T 3sbx_A 43 RGWTLVWGGGHVSAMGAVSSAARAHGGWTVGVIPKMLVHRELADHDADELVVTETMWERKQVMEDRA----NA-FITLPG 117 (189)
T ss_dssp TTCEEEECCBCSHHHHHHHHHHHTTTCCEEEEEETTTTTTTTBCTTCSEEEEESSHHHHHHHHHHHC----SE-EEECSC
T ss_pred CCCEEEECCCccCHHHHHHHHHHHcCCcEEEEcCchhhhcccCCCCCCeeEEcCCHHHHHHHHHHHC----CE-EEEeCC
Confidence 357788876544665 55888888863 2232 111000001112333322222 44 444677
Q ss_pred cccChHHHHHHHHHHHHhcCCCCcEEEEeC-Cc--chHHHHHHHhhCCCC-------ccccCCHHHHHHHH
Q psy7785 366 GIVNCATIAKGLVNACKSFKLSIPLVVRLE-GT--NVQEGKRILDESKLP-------LIFASDLDEAASLV 426 (525)
Q Consensus 366 ~~~~~~~ia~~i~~a~~~~~~~kPivv~~~-g~--~~~~~~~~L~~~Gvp-------vf~~~s~~~Av~Al 426 (525)
|.-..+++.+.+.-..-.. ++|||++.-. |- .-.+-.+.+.+.|.- +..++++++++..+
T Consensus 118 G~GTLdElfe~lt~~qlg~-~~kPvvlln~~gfw~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~~ee~~~~l 187 (189)
T 3sbx_A 118 GVGTLDELLDVWTEGYLGM-HDKSIVVLDPWGHFDGLRAWLSELADTGYVSRTAMERLIVVDNLDDALQAC 187 (189)
T ss_dssp CHHHHHHHHHHHHHHHTTS-CCCCEEEECTTCTTHHHHHHHHHHHHTTSSCHHHHHHEEEESSHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhcc-cCCCEEEecCCccchHHHHHHHHHHHCCCCCHHHcCeEEEeCCHHHHHHHh
Confidence 7655677777765443222 5799987532 32 111112344455542 11248898888765
No 187
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=51.43 E-value=25 Score=35.13 Aligned_cols=64 Identities=14% Similarity=0.149 Sum_probs=39.7
Q ss_pred ccCCcEEEEecchhHHH-------HHHHHHHHcCCCC---CCeeeecC--CCCHHHHHHHHHHHhcCCCccEEEEE
Q psy7785 299 GMDGNIGCLVNGAGLAM-------ATMDIIKLHGGEP---ANFLDVGG--GVNEESIIQAFRIISSDSNVKCILVN 362 (525)
Q Consensus 299 ~~~~rIaIitnsGG~gv-------laaD~~~~~Gl~~---aNPlDl~g--~a~~~~~~~al~~ll~dp~vd~vlv~ 362 (525)
+.|.+||||+.|+|.+. .+...+++.|+++ .|...-.+ ..+++.=.+-|..++.||+||+|+..
T Consensus 10 ~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~ 85 (327)
T 4h1h_A 10 KQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTV 85 (327)
T ss_dssp CTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEES
T ss_pred CCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 34679999999988642 3567888899853 11111111 12333333345556789999999864
No 188
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=51.15 E-value=65 Score=31.15 Aligned_cols=81 Identities=15% Similarity=0.187 Sum_probs=51.3
Q ss_pred CcEEEEecchhHHHH------HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHh-cCCCccEEEEEecccccChHHHH
Q psy7785 302 GNIGCLVNGAGLAMA------TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIIS-SDSNVKCILVNVFGGIVNCATIA 374 (525)
Q Consensus 302 ~rIaIitnsGG~gvl------aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll-~dp~vd~vlv~~~~~~~~~~~ia 374 (525)
++|++++..-+.... ..+++.++|++.....-..++.+.+.-.++++.++ ..|.+|+|+.. .+.+|
T Consensus 182 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~-------nd~~A 254 (338)
T 3dbi_A 182 QEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVAS-------NDDMA 254 (338)
T ss_dssp CSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEEES-------SHHHH
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHCCCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeEEEEC-------ChHHH
Confidence 589999765432221 34678888876543333456667666555555554 67889998852 35677
Q ss_pred HHHHHHHHhcCCCCc
Q psy7785 375 KGLVNACKSFKLSIP 389 (525)
Q Consensus 375 ~~i~~a~~~~~~~kP 389 (525)
-++.+++++.+...|
T Consensus 255 ~g~~~al~~~G~~vP 269 (338)
T 3dbi_A 255 IGAMKALHERGVAVP 269 (338)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHcCCCCC
Confidence 788888887654433
No 189
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=50.15 E-value=86 Score=29.27 Aligned_cols=122 Identities=12% Similarity=0.079 Sum_probs=60.1
Q ss_pred CcEEEEecchhHHHH--HHHHHHHcCCC-----C---------CCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecc
Q psy7785 302 GNIGCLVNGAGLAMA--TMDIIKLHGGE-----P---------ANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFG 365 (525)
Q Consensus 302 ~rIaIitnsGG~gvl--aaD~~~~~Gl~-----~---------aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~ 365 (525)
.++.|||.+|..|+| +++.+.+.|+. | .|+++-.-....=.-++.+-. . .-|++++ .++
T Consensus 44 ~G~~vVsGGg~~GiM~aa~~gAl~~GG~tiGVlP~~~~~~e~~~~~~~~~~~~~~f~~Rk~~~~--~--~sda~Vv-lpG 118 (215)
T 2a33_A 44 RNIDLVYGGGSIGLMGLVSQAVHDGGRHVIGIIPKTLMPRELTGETVGEVRAVADMHQRKAEMA--K--HSDAFIA-LPG 118 (215)
T ss_dssp TTCEEEECCCSSHHHHHHHHHHHHTTCCEEEEEESSCC--------CCEEEEESSHHHHHHHHH--H--TCSEEEE-CSC
T ss_pred CCCEEEECCChhhHhHHHHHHHHHcCCcEEEEcchHhcchhhccCCCCceeecCCHHHHHHHHH--H--hCCEEEE-eCC
Confidence 368888766644776 55888888863 1 122110000000011222222 2 2355544 566
Q ss_pred cccChHHHHHHHHHHHHhcCCCCcEEEEeC-Cc--chHHHHHHHhhCCC-------CccccCCHHHHHHHHHHh
Q psy7785 366 GIVNCATIAKGLVNACKSFKLSIPLVVRLE-GT--NVQEGKRILDESKL-------PLIFASDLDEAASLVNAC 429 (525)
Q Consensus 366 ~~~~~~~ia~~i~~a~~~~~~~kPivv~~~-g~--~~~~~~~~L~~~Gv-------pvf~~~s~~~Av~Al~~l 429 (525)
|.-..+++++.+.-..-. .++|||++.-. |- .-....+.+.+.|+ -+..++|+++++..+.++
T Consensus 119 G~GTLdElfE~lt~~qlg-~~~kPvvll~~~g~w~~l~~~l~~~~~~Gfi~~~~~~~~~~~d~~ee~~~~l~~~ 191 (215)
T 2a33_A 119 GYGTLEELLEVITWAQLG-IHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAPTAKELVKKLEEY 191 (215)
T ss_dssp CHHHHHHHHHHHHHHHTT-SCCCCEEEECGGGTTHHHHHHHHHHHHHTSSCHHHHTTEEEESSHHHHHHHHHC-
T ss_pred CCchHHHHHHHHHHHHhC-CCCCCeEEecCcchhHHHHHHHHHHHHcCCCCHHHCCeEEEeCCHHHHHHHHHHh
Confidence 655567777766544222 26899987432 21 11111223333443 122259999999988654
No 190
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=49.46 E-value=1.9e+02 Score=28.03 Aligned_cols=157 Identities=12% Similarity=0.109 Sum_probs=81.2
Q ss_pred cCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHH---H
Q psy7785 335 GGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKR---I 405 (525)
Q Consensus 335 ~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~---~ 405 (525)
-|..+.+.+.+.++-+.+. ++|+++++-..|. ... ..+.+..++... .+.||++..++++..++.+ .
T Consensus 15 dg~iD~~~l~~lv~~li~~-Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~---grvpviaGvg~~~t~~ai~la~~ 90 (297)
T 2rfg_A 15 NGQVDEKALAGLVDWQIKH-GAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQ---GRVPVIAGAGSNNPVEAVRYAQH 90 (297)
T ss_dssp TTEECHHHHHHHHHHHHHT-TCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHT---TSSCBEEECCCSSHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHc-CCCEEEECccccchhhCCHHHHHHHHHHHHHHhC---CCCeEEEccCCCCHHHHHHHHHH
Confidence 4677788899999988874 8999998544332 122 234444444433 3688988776655555543 3
Q ss_pred HhhCCC-------CccccCCHHHHHHHHHHhhcccCCCCeEE-EeCCCCHHHHHHHHHHCCCCeEEEcChhHHHHHHHHh
Q psy7785 406 LDESKL-------PLIFASDLDEAASLVNACKSFKLSIPLVV-RLEGTNVQEGKRILDESKLPLIFASDLDEAASLVNAC 477 (525)
Q Consensus 406 L~~~Gv-------pvf~~~s~~~Av~Al~~l~~~~~~~P~~~-~l~g~~e~eak~LL~ayGIpv~lA~s~deAv~~~~aa 477 (525)
..+.|. |.|...+.+..++.+.+..+. ...|+.. ..|+. .|+.+ +.+...+ .+
T Consensus 91 A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a-~~lPiilYn~P~~-----------tg~~l----~~~~~~~---La 151 (297)
T 2rfg_A 91 AQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDA-IDIPIIVYNIPPR-----------AVVDI----KPETMAR---LA 151 (297)
T ss_dssp HHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHH-CSSCEEEEECHHH-----------HSCCC----CHHHHHH---HH
T ss_pred HHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEeCccc-----------cCCCC----CHHHHHH---HH
Confidence 344454 555434555545444444321 2344432 12110 01111 3333333 22
Q ss_pred hhcCCCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHH
Q psy7785 478 KSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDE 517 (525)
Q Consensus 478 ~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (525)
+. .-=+-+|-.+.+...-.+++...+-.+.++.-.|+
T Consensus 152 -~~--pnIvgiKds~gd~~~~~~~~~~~~~~f~v~~G~d~ 188 (297)
T 2rfg_A 152 -AL--PRIVGVKDATTDLARISRERMLINKPFSFLSGDDM 188 (297)
T ss_dssp -TS--TTEEEEEECSCCTTHHHHHHTTCCSCCEEEESCGG
T ss_pred -cC--CCEEEEEeCCCCHHHHHHHHHhcCCCEEEEeCcHH
Confidence 21 12244787777777777777653223444544343
No 191
>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A*
Probab=49.40 E-value=7.8 Score=40.36 Aligned_cols=77 Identities=18% Similarity=0.204 Sum_probs=44.3
Q ss_pred HHHHHhhCCCCccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCC---Ce---EEEcChhHHHHHHH
Q psy7785 402 GKRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKL---PL---IFASDLDEAASLVN 475 (525)
Q Consensus 402 ~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGI---pv---~lA~s~deAv~~~~ 475 (525)
..+.|+..|+|++ .+++....+--+.+- -....++|...|+ |+ ....+..++
T Consensus 202 vlr~lE~~Gvpvi--Ns~~sI~~~~DK~~v---------------f~~~l~ll~~~gi~~iP~t~~t~~~~~~~~----- 259 (422)
T 1pk8_A 202 LVIGLQYAGIPSV--NSLHSVYNFCDKPWV---------------FAQMVRLHKKLGTEEFPLIDQTFYPNHKEM----- 259 (422)
T ss_dssp HHHHHHHTTCCEE--SCHHHHHHTSSHHHH---------------HHHHHHHHHHHCTTTSCBCCCEEESSGGGC-----
T ss_pred HHHHHHHCCcccc--CCHHHHHHhCCccHH---------------HHHHHHHHHhCCCCCCCCCceEecCchhhh-----
Confidence 3556888999999 765432222111000 0135667778888 85 444554442
Q ss_pred HhhhcCCCCcEEEEEecC----------ChHHHHHhhh
Q psy7785 476 ACKSFKLSIPLVVRLEGT----------NVQEGKRILD 503 (525)
Q Consensus 476 aa~~~~~G~PVVlKi~~~----------~~~~~~~~~~ 503 (525)
.+. .|||||+|.... +.++++.++.
T Consensus 260 -i~~--~g~PvVvKp~~GS~G~GV~lve~~~~l~~ii~ 294 (422)
T 1pk8_A 260 -LSS--TTYPVVVKMGHAHSGMGKVKVDNQHDFQDIAS 294 (422)
T ss_dssp -CCC--SSSSEEEEESSCCTTTTEEEECSHHHHHHHHH
T ss_pred -hhc--cCCCEEEEeCCCCceeCeEEeCCHHHHHHHHH
Confidence 234 499999998653 3456665554
No 192
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=48.89 E-value=56 Score=30.88 Aligned_cols=81 Identities=12% Similarity=0.078 Sum_probs=50.0
Q ss_pred CcEEEEecchhHHHH------HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHh-cCCCccEEEEEecccccChHHHH
Q psy7785 302 GNIGCLVNGAGLAMA------TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIIS-SDSNVKCILVNVFGGIVNCATIA 374 (525)
Q Consensus 302 ~rIaIitnsGG~gvl------aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll-~dp~vd~vlv~~~~~~~~~~~ia 374 (525)
+||++++...+.... ..+++.++|+......-..++.+.+.-.++++.++ ..+.+|+|+.. .+.+|
T Consensus 127 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------nd~~A 199 (294)
T 3qk7_A 127 QRIAFVSTDARISYVDQRLQGYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPPTAIITD-------CNMLG 199 (294)
T ss_dssp CCEEEEEESSCCHHHHHHHHHHHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCCSEEEES-------SHHHH
T ss_pred ceEEEEeCCcccchHHHHHHHHHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHcCCCCCcEEEEC-------CHHHH
Confidence 589999866443221 23677778876543333445666666444454444 56889998852 36777
Q ss_pred HHHHHHHHhcCCCCc
Q psy7785 375 KGLVNACKSFKLSIP 389 (525)
Q Consensus 375 ~~i~~a~~~~~~~kP 389 (525)
-++.+++++.+...|
T Consensus 200 ~g~~~al~~~G~~vP 214 (294)
T 3qk7_A 200 DGVASALDKAGLLGG 214 (294)
T ss_dssp HHHHHHHHHTTCSST
T ss_pred HHHHHHHHHcCCCCC
Confidence 888888887554433
No 193
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=48.74 E-value=1.1e+02 Score=28.21 Aligned_cols=81 Identities=16% Similarity=0.216 Sum_probs=49.0
Q ss_pred CcEEEEecchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhc-CCCccEEEEEecccccChHHHH
Q psy7785 302 GNIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISS-DSNVKCILVNVFGGIVNCATIA 374 (525)
Q Consensus 302 ~rIaIitnsGG~gv------laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~-dp~vd~vlv~~~~~~~~~~~ia 374 (525)
++|++++...+... -..+++.++|++...-.-..++.+.+...++++.+++ .|.+|+|+.. .+.+|
T Consensus 121 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a 193 (275)
T 3d8u_A 121 KNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALVCS-------HEEIA 193 (275)
T ss_dssp CCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCCEEEES-------SHHHH
T ss_pred CeEEEEcCCCCCchHHHHHHHHHHHHHHcCCCCCccEEEeCCCChhHHHHHHHHHHhCCCCCCEEEEc-------CcHHH
Confidence 58999986533211 1236788888765332223455666665555555444 5789988852 35677
Q ss_pred HHHHHHHHhcCCCCc
Q psy7785 375 KGLVNACKSFKLSIP 389 (525)
Q Consensus 375 ~~i~~a~~~~~~~kP 389 (525)
.++++++++.+...|
T Consensus 194 ~g~~~al~~~g~~vP 208 (275)
T 3d8u_A 194 IGALFECHRRVLKVP 208 (275)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHcCCCCC
Confidence 788888877544444
No 194
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=48.64 E-value=2e+02 Score=28.10 Aligned_cols=142 Identities=6% Similarity=0.003 Sum_probs=81.8
Q ss_pred CCCeeee-cCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchH
Q psy7785 328 PANFLDV-GGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQ 400 (525)
Q Consensus 328 ~aNPlDl-~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~ 400 (525)
+--|.|= .|..+.+.+.+.++-+.+ .++|+++++-..|. ... ..+.+..++... .+.||++..+. +..
T Consensus 19 ~vTPf~~~dg~iD~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~---grvpViaGvg~-~t~ 93 (316)
T 3e96_A 19 PITPFRKSDGSIDWHHYKETVDRIVD-NGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVH---GRALVVAGIGY-ATS 93 (316)
T ss_dssp CCCCBCTTTCCBCHHHHHHHHHHHHT-TTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHT---TSSEEEEEECS-SHH
T ss_pred eeCCccCCCCCCCHHHHHHHHHHHHH-cCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhC---CCCcEEEEeCc-CHH
Confidence 3456665 678888889999999886 58999997544332 112 234444444433 36898887654 445
Q ss_pred HHHH---HHhhCCC-------CccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCeEEEc-----
Q psy7785 401 EGKR---ILDESKL-------PLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFAS----- 465 (525)
Q Consensus 401 ~~~~---~L~~~Gv-------pvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv~lA~----- 465 (525)
++.+ ...+.|. |+|...+.+..++.+.+.. ++.++|+.+..
T Consensus 94 ~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va------------------------~a~~lPiilYn~g~~l 149 (316)
T 3e96_A 94 TAIELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDII------------------------EALDFPSLVYFKDPEI 149 (316)
T ss_dssp HHHHHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHH------------------------HHHTSCEEEEECCTTS
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHH------------------------HhCCCCEEEEeCCCCC
Confidence 5443 3344454 5554345555444443333 33344442221
Q ss_pred ChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhhh
Q psy7785 466 DLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDE 504 (525)
Q Consensus 466 s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~ 504 (525)
+.+...+ .+ +. .-=+-+|-.+.+...-.++++.
T Consensus 150 ~~~~~~~---La-~~--pnIvgiKdssgd~~~~~~~~~~ 182 (316)
T 3e96_A 150 SDRVLVD---LA-PL--QNLVGVKYAINDLPRFAKVVRS 182 (316)
T ss_dssp CTHHHHH---HT-TC--TTEEEEEECCCCHHHHHHHHTT
T ss_pred CHHHHHH---HH-cC--CCEEEEEeCCCCHHHHHHHHHh
Confidence 3333333 33 32 2337799999999888888876
No 195
>3bq9_A Predicted rossmann fold nucleotide-binding domain containing protein; structural genomics, PSI-2, protein structure initiative; 1.80A {Idiomarina baltica}
Probab=48.29 E-value=72 Score=33.37 Aligned_cols=119 Identities=13% Similarity=0.094 Sum_probs=60.8
Q ss_pred CcEEEEecchhHHHH---HHHHHHH------cCCC-------------CCCe-ee---ecCCCCHHHHHHHHHHHhcCCC
Q psy7785 302 GNIGCLVNGAGLAMA---TMDIIKL------HGGE-------------PANF-LD---VGGGVNEESIIQAFRIISSDSN 355 (525)
Q Consensus 302 ~rIaIitnsGG~gvl---aaD~~~~------~Gl~-------------~aNP-lD---l~g~a~~~~~~~al~~ll~dp~ 355 (525)
..+.+||.||+ |+| .+++... .|+. ..|| +| ++.+. .-++.+-+-.+
T Consensus 174 ~G~~LVtGGG~-GlMEaa~aGA~~a~s~qr~~GG~vIGIiP~~L~~~E~~N~~vtelIiv~~m---~eRK~~mv~~S--- 246 (460)
T 3bq9_A 174 RGLNICTGCGP-GAMKGPMKGATIGHAKQRVEGGRYLGLTEPGIIAAEPPNPIVNELVILPDI---EKRLEAFVRCA--- 246 (460)
T ss_dssp TTCEEEECCSS-GGGTHHHHHHHHHHHHTTCSSCCEEEEECTTTTTTSCCCTTCSEEEECSSH---HHHHHHHHHHC---
T ss_pred CCCEEEeCCcH-HHhhHHHhhHHhhcccccCCCCEEEEEeChhhhhhhhcCCCCCeEEEECCH---HHHHHHHHHhC---
Confidence 46888887776 887 6688877 4542 3454 22 12211 11233222222
Q ss_pred ccEEEEEecccccChHHHHHHHHHHHHh--cCCCCcEEEEeC-C-cchHHH-HHHHh----hCCCC--ccccCCHHHHHH
Q psy7785 356 VKCILVNVFGGIVNCATIAKGLVNACKS--FKLSIPLVVRLE-G-TNVQEG-KRILD----ESKLP--LIFASDLDEAAS 424 (525)
Q Consensus 356 vd~vlv~~~~~~~~~~~ia~~i~~a~~~--~~~~kPivv~~~-g-~~~~~~-~~~L~----~~Gvp--vf~~~s~~~Av~ 424 (525)
|+ +|..+||....+++++.+.-..-. ...+|||++.-. + ...... ...+. +...- ++.+++|++++.
T Consensus 247 -DA-fIaLPGG~GTLeELfEaLT~~QLg~~k~~~kPVVLlg~~n~~gywd~Ll~~l~~~l~~~~~~~~iiv~ddpeEal~ 324 (460)
T 3bq9_A 247 -HG-IVIFPGGAGTAEELLYLLGILMHPDNQRQSLPVILTGPASSRDYFEALDEFIGATIGDEARQLYKIIIDDPAAVAQ 324 (460)
T ss_dssp -SE-EEECSCSHHHHHHHHHHHHHHTSGGGTTCCCCEEEEECGGGHHHHHHHHHHHHHHTCTTGGGGCEEEESCHHHHHH
T ss_pred -CE-EEEcCCCcchHHHHHHHHHHHhhccccCCCCCEEEEecCCccchhhHHHHHHHHHhcchhhcCcEEEeCCHHHHHH
Confidence 44 444677765567777776543211 125799986531 1 112222 11111 11111 112599999998
Q ss_pred HHHHh
Q psy7785 425 LVNAC 429 (525)
Q Consensus 425 Al~~l 429 (525)
.+...
T Consensus 325 ~l~~~ 329 (460)
T 3bq9_A 325 HMHAG 329 (460)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88653
No 196
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=47.19 E-value=2.1e+02 Score=27.86 Aligned_cols=166 Identities=10% Similarity=0.095 Sum_probs=87.7
Q ss_pred CCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cChHHHHHHHHHHHHh-cCCCCcEEEEeCCcchHHHHH
Q psy7785 329 ANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNCATIAKGLVNACKS-FKLSIPLVVRLEGTNVQEGKR 404 (525)
Q Consensus 329 aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~~~ia~~i~~a~~~-~~~~kPivv~~~g~~~~~~~~ 404 (525)
--|.|=-|..+.+.+.+.++.+.+ .++|+++++-.+|. ...++-. .+++...+ .+.+.||++..+++...++.+
T Consensus 23 vTPf~~dg~iD~~~l~~lv~~li~-~Gv~Gl~v~GtTGE~~~Ls~~Er~-~v~~~~~~~~~gr~pviaGvg~~~t~~ai~ 100 (307)
T 3s5o_A 23 TTPFTATAEVDYGKLEENLHKLGT-FPFRGFVVQGSNGEFPFLTSSERL-EVVSRVRQAMPKNRLLLAGSGCESTQATVE 100 (307)
T ss_dssp CCCBCTTSCBCHHHHHHHHHHHTT-SCCSEEEESSGGGTGGGSCHHHHH-HHHHHHHHTSCTTSEEEEECCCSSHHHHHH
T ss_pred EccCCCCCCcCHHHHHHHHHHHHH-cCCCEEEECccccchhhCCHHHHH-HHHHHHHHHcCCCCcEEEecCCCCHHHHHH
Confidence 456666678888889999998875 57999998654442 1222222 22333222 224688888766655555543
Q ss_pred ---HHhhCCC-------Ccccc--CCHHHHHHHHHHhhcccCCCCeEE-EeCCCCHHHHHHHHHHCCCCeEEEcChhHHH
Q psy7785 405 ---ILDESKL-------PLIFA--SDLDEAASLVNACKSFKLSIPLVV-RLEGTNVQEGKRILDESKLPLIFASDLDEAA 471 (525)
Q Consensus 405 ---~L~~~Gv-------pvf~~--~s~~~Av~Al~~l~~~~~~~P~~~-~l~g~~e~eak~LL~ayGIpv~lA~s~deAv 471 (525)
...+.|. |.|.. .+.+..++.+.+..+. ...|+.. ..++. .|+.+ +.+...
T Consensus 101 la~~A~~~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a-~~lPiilYn~P~~-----------tg~~l----~~~~~~ 164 (307)
T 3s5o_A 101 MTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADL-SPIPVVLYSVPAN-----------TGLDL----PVDAVV 164 (307)
T ss_dssp HHHHHHHTTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHH-CSSCEEEEECHHH-----------HSCCC----CHHHHH
T ss_pred HHHHHHHcCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhh-cCCCEEEEeCCcc-----------cCCCC----CHHHHH
Confidence 4445665 55521 3555555555444331 2345443 12210 12221 333333
Q ss_pred HHHHHhhhcCCCCcEEEEEecCChHHHHHhhhh-CCCCceeccCHHHH
Q psy7785 472 SLVNACKSFKLSIPLVVRLEGTNVQEGKRILDE-SKLPLIFASDLDEA 518 (525)
Q Consensus 472 ~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 518 (525)
+ .+ +. .-=+-+|-.+.+...-.+++.. .+..+.++.-.|+.
T Consensus 165 ~---La-~~--pnIvgiKdssgd~~~~~~~~~~~~~~~f~v~~G~d~~ 206 (307)
T 3s5o_A 165 T---LS-QH--PNIVGMXDSGGDVTRIGLIVHKTRKQDFQVLAGSAGF 206 (307)
T ss_dssp H---HH-TS--TTEEEEEECSCCHHHHHHHHHHTTTSSCEEEESSGGG
T ss_pred H---Hh-cC--CCEEEEEcCCCCHHHHHHHHHhccCCCeEEEeCcHHH
Confidence 3 23 21 2236688888888777777765 23345556544443
No 197
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=46.60 E-value=76 Score=28.33 Aligned_cols=120 Identities=13% Similarity=0.094 Sum_probs=71.3
Q ss_pred CcEEEEecc------hhHHHHHHHHHHH-cCCCCCCe--eeecCCCCHHHHHHHHHHHhcCCCccEEEEEe--c-cccc-
Q psy7785 302 GNIGCLVNG------AGLAMATMDIIKL-HGGEPANF--LDVGGGVNEESIIQAFRIISSDSNVKCILVNV--F-GGIV- 368 (525)
Q Consensus 302 ~rIaIitns------GG~gvlaaD~~~~-~Gl~~aNP--lDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~--~-~~~~- 368 (525)
-||+||... ..+---+.|.+.+ +|.+..|. +.+-|. -.+.-+.+.+.+..++|+++..- . ++..
T Consensus 18 ~riaIV~arfn~~I~~~Ll~ga~~~l~~~~Gv~~~~i~v~~VPGa---fEiP~aa~~la~~~~yDavIaLG~VIrG~T~H 94 (159)
T 1kz1_A 18 LRILIVHARGNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGS---WELPQGIRASIARNTYDAVIGIGVLIKGSTMH 94 (159)
T ss_dssp CCEEEEECCTTHHHHHHHHHHHHHHHHHHHCCCGGGEEEEECSSG---GGHHHHHHHHHHHSCCSEEEEEEEEECCSSSH
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHHHcCCCccceEEEECCcH---HHHHHHHHHHHhcCCCCEEEEecccccCCchH
Confidence 478888754 2344456799999 89886663 333343 22555667777778899999742 2 3332
Q ss_pred ---ChHHHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHhhCCCCccccCCHHHHHHHHHHhh
Q psy7785 369 ---NCATIAKGLVNACKSFKLSIPLVVRLEG-TNVQEGKRILDESKLPLIFASDLDEAASLVNACK 430 (525)
Q Consensus 369 ---~~~~ia~~i~~a~~~~~~~kPivv~~~g-~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~ 430 (525)
.|..++++|.++.-+ +++||...... .+.+++.. +.|..-. .+--.+|+.+..++.
T Consensus 95 fd~Va~~v~~Gl~~v~L~--~~vPV~~GVLT~~~~eQA~~---Rag~~~~-~nKG~eaA~aalem~ 154 (159)
T 1kz1_A 95 FEYISEAVVHGLMRVGLD--SGVPVILGLLTVLNEEQALY---RAGLNGG-HNHGNDWGSAAVEMG 154 (159)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCCCEEEEEEEESSHHHHHH---HBTCTTC-CBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh--cCCCEEEEEeCCCCHHHHHH---HhCCccc-cchHHHHHHHHHHHH
Confidence 245667788777666 68999865433 34455443 3343110 133456666665554
No 198
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=46.25 E-value=59 Score=30.98 Aligned_cols=110 Identities=14% Similarity=0.133 Sum_probs=58.4
Q ss_pred cEEEEecchhHHHHHHHHHHHc-CCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHH
Q psy7785 303 NIGCLVNGAGLAMATMDIIKLH-GGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNAC 381 (525)
Q Consensus 303 rIaIitnsGG~gvlaaD~~~~~-Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~ 381 (525)
||+|+..+|..|-..+..+... |.++.--+|...+ ++.++. .+.|.++- ++.... + ...+..+
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~d---------l~~~~~-~~~DvvID--fT~p~a---~-~~~~~~a 65 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDP---------LSLLTD-GNTEVVID--FTHPDV---V-MGNLEFL 65 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCC---------THHHHH-TTCCEEEE--CSCTTT---H-HHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCC---------HHHHhc-cCCcEEEE--ccChHH---H-HHHHHHH
Confidence 6889888899999999998765 5543222332211 122222 24674442 222111 1 2233333
Q ss_pred HhcCCCCcEEEEeCCcchHH--HHHHHhh-C-CCCccccCCHHHHHHHHHHhh
Q psy7785 382 KSFKLSIPLVVRLEGTNVQE--GKRILDE-S-KLPLIFASDLDEAASLVNACK 430 (525)
Q Consensus 382 ~~~~~~kPivv~~~g~~~~~--~~~~L~~-~-Gvpvf~~~s~~~Av~Al~~l~ 430 (525)
.+ .++|+|+...|-..+. ..+.+.+ . ++|++..++..-.+..+.++.
T Consensus 66 ~~--~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~N~siGv~ll~~l~ 116 (245)
T 1p9l_A 66 ID--NGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNFAIGAVLSMHFA 116 (245)
T ss_dssp HH--TTCEEEECCCCCCHHHHHHHHHHHHTSTTCEEEECSCCCHHHHHHHHHH
T ss_pred HH--cCCCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEECCccHHHHHHHHHH
Confidence 44 5799988766643221 1222222 3 899775555555555555544
No 199
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=45.88 E-value=64 Score=30.20 Aligned_cols=118 Identities=14% Similarity=0.139 Sum_probs=59.7
Q ss_pred cEEEEecchhHHHHHH--HHHHHcCCC------------CCCeeeecCCCCHHHH--HHHHHHHhcCCCccEEEEEeccc
Q psy7785 303 NIGCLVNGAGLAMATM--DIIKLHGGE------------PANFLDVGGGVNEESI--IQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 303 rIaIitnsGG~gvlaa--D~~~~~Gl~------------~aNPlDl~g~a~~~~~--~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
++.+||-+| .|+|.+ +.+.+.|+. ..||. ++-......+ ++.+ +.. .-|++++ .++|
T Consensus 69 g~~lVsGGg-~GiM~aa~~gAl~~gG~~iGV~~~~P~~~~~~~~-~t~~~~~~~f~~Rk~~--m~~--~sda~Iv-lpGG 141 (217)
T 1wek_A 69 GFGVVTGGG-PGVMEAVNRGAYEAGGVSVGLNIELPHEQKPNPY-QTHALSLRYFFVRKVL--FVR--YAVGFVF-LPGG 141 (217)
T ss_dssp TCEEEECSC-SHHHHHHHHHHHHTTCCEEEEEECCTTCCCCCSC-CSEEEEESCHHHHHHH--HHH--TEEEEEE-CSCC
T ss_pred CCEEEeCCh-hhHHHHHHHHHHHcCCCEEEEeeCCcchhhcccc-CCcCcccCCHHHHHHH--HHH--hCCEEEE-eCCC
Confidence 577887655 888854 788777763 23331 1100000112 2222 221 1355554 4666
Q ss_pred ccChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHH----HHHHhhCCCC-------ccccCCHHHHHHHHHHh
Q psy7785 367 IVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEG----KRILDESKLP-------LIFASDLDEAASLVNAC 429 (525)
Q Consensus 367 ~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~----~~~L~~~Gvp-------vf~~~s~~~Av~Al~~l 429 (525)
....+++.+.+.-..-....+|||++.-.+ .... .+.+.+.|.- +..++++++++..+.++
T Consensus 142 ~GTL~El~e~lt~~qlg~~~~kPvvll~~~--~w~~l~~~l~~~~~~Gfi~~~~~~~~~~~~~~~e~~~~l~~~ 213 (217)
T 1wek_A 142 FGTLDELSEVLVLLQTEKVHRFPVFLLDRG--YWEGLVRWLAFLRDQKAVGPEDLQLFRLTDEPEEVVQALKAE 213 (217)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCCCEEEECHH--HHHHHHHHHHHHHHTTSSCTTGGGGSEEESCHHHHHHHHHC-
T ss_pred CcHHHHHHHHHHHHhhCCCCCCCEEEeCcc--cchhHHHHHHHHHHCCCCCHHHcCeEEEeCCHHHHHHHHHHh
Confidence 544567777665432221246999864221 2222 1344445541 12259999999888654
No 200
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=45.26 E-value=1.7e+02 Score=26.93 Aligned_cols=115 Identities=14% Similarity=0.115 Sum_probs=59.5
Q ss_pred CcEEEEecchhHHHH--HHHHHHHcCCC-------------CCCe-ee---ecCCCCHHHHHHHHHHHhcCCCccEEEEE
Q psy7785 302 GNIGCLVNGAGLAMA--TMDIIKLHGGE-------------PANF-LD---VGGGVNEESIIQAFRIISSDSNVKCILVN 362 (525)
Q Consensus 302 ~rIaIitnsGG~gvl--aaD~~~~~Gl~-------------~aNP-lD---l~g~a~~~~~~~al~~ll~dp~vd~vlv~ 362 (525)
.++.+||-||..|+| ++|.+.+.|+. ..|| +| .+.+ -..++.+-.-.+ |+ +|.
T Consensus 52 ~g~~lV~GGG~~GlM~a~~~gA~~~GG~viGv~p~~l~~~e~~~~~~~~~i~~~~---~~~Rk~~m~~~s----da-~Ia 123 (199)
T 3qua_A 52 RGWTLVSGGGNVSAMGAVAQAARAKGGHTVGVIPKALVHRELADVDAAELIVTDT---MRERKREMEHRS----DA-FIA 123 (199)
T ss_dssp TTCEEEECCBCSHHHHHHHHHHHHTTCCEEEEEEGGGTTTTTBCTTSSEEEEESS---HHHHHHHHHHHC----SE-EEE
T ss_pred CCCEEEECCCccCHHHHHHHHHHHcCCcEEEEeCchhhhccccCCCCCeeEEcCC---HHHHHHHHHHhc----Cc-cEE
Confidence 357788766533555 56888888863 1222 11 1111 112333323233 44 455
Q ss_pred ecccccChHHHHHHHHHHHHhcCCCCcEEEEeC-CcchHHH---HHHHhhCCCC-------ccccCCHHHHHHHH
Q psy7785 363 VFGGIVNCATIAKGLVNACKSFKLSIPLVVRLE-GTNVQEG---KRILDESKLP-------LIFASDLDEAASLV 426 (525)
Q Consensus 363 ~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~-g~~~~~~---~~~L~~~Gvp-------vf~~~s~~~Av~Al 426 (525)
.++|.-..+++.+.+.-..-. .++|||++.-. |- ...- .+.+.+.|.- +..++|+++++..+
T Consensus 124 lPGG~GTldEl~e~lt~~qlg-~~~kPvvlln~~gf-w~~l~~~l~~~~~~Gfi~~~~~~~i~~~d~~~e~~~~l 196 (199)
T 3qua_A 124 LPGGIGTLEEFFEAWTAGYLG-MHDKPLILLDPFGH-YDGLLTWLRGLVPTGYVSQRAMDSLVVVDNVEAALEAC 196 (199)
T ss_dssp CSCCHHHHHHHHHHHHHHHTT-SCCCCEEEECTTST-THHHHHHHHHTTTTTSSCHHHHHTSEEESSHHHHHHHH
T ss_pred eCCCccHHHHHHHHHHHHHhc-cCCCCEEEEcCCcc-chHHHHHHHHHHHCCCCCHHHCCeEEEeCCHHHHHHHH
Confidence 677765567777776543222 25799986533 32 1111 2334445531 12258899988776
No 201
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=44.42 E-value=90 Score=30.19 Aligned_cols=81 Identities=19% Similarity=0.169 Sum_probs=49.3
Q ss_pred CcEEEEecchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhc-CCCccEEEEEecccccChHHHH
Q psy7785 302 GNIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISS-DSNVKCILVNVFGGIVNCATIA 374 (525)
Q Consensus 302 ~rIaIitnsGG~gv------laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~-dp~vd~vlv~~~~~~~~~~~ia 374 (525)
+||++++...+... -..+++.++|+......-..++.+.+.-.++++.+++ .+.+|+|+.. .+.+|
T Consensus 178 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~-------nd~~A 250 (340)
T 1qpz_A 178 REIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCG-------GDIMA 250 (340)
T ss_dssp CCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEES-------SHHHH
T ss_pred CEEEEEeCCCccccHHHHHHHHHHHHHHCCCCCChhheEeCCCCHHHHHHHHHHHHcCCCCCcEEEEC-------CHHHH
Confidence 58999976533211 1346788888764322223455566665555555555 5789998852 35677
Q ss_pred HHHHHHHHhcCCCCc
Q psy7785 375 KGLVNACKSFKLSIP 389 (525)
Q Consensus 375 ~~i~~a~~~~~~~kP 389 (525)
-++.+++++.+...|
T Consensus 251 ~g~~~al~~~G~~vP 265 (340)
T 1qpz_A 251 MGALCAADEMGLRVP 265 (340)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHcCCCCC
Confidence 788888887554434
No 202
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=43.99 E-value=1.1e+02 Score=28.55 Aligned_cols=79 Identities=16% Similarity=0.137 Sum_probs=49.0
Q ss_pred CcEEEEecch-hHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhc-CCCccEEEEEecccccChHHH
Q psy7785 302 GNIGCLVNGA-GLAM------ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISS-DSNVKCILVNVFGGIVNCATI 373 (525)
Q Consensus 302 ~rIaIitnsG-G~gv------laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~-dp~vd~vlv~~~~~~~~~~~i 373 (525)
++|++++... +... -..+++.++|++...-.-..++.+.+.-.++++.+++ .|.+|+|+.. .+.+
T Consensus 134 ~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~ 206 (289)
T 2fep_A 134 TDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAILSA-------TDEM 206 (289)
T ss_dssp SSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSEEEES-------SHHH
T ss_pred CeEEEEeCCccccccHHHHHHHHHHHHHHcCCCCChheEeeCCCCHHHHHHHHHHHHcCCCCCCEEEEC-------CHHH
Confidence 5899998764 3222 1346788888764322123455566665556666555 5789998852 3566
Q ss_pred HHHHHHHHHhcCCC
Q psy7785 374 AKGLVNACKSFKLS 387 (525)
Q Consensus 374 a~~i~~a~~~~~~~ 387 (525)
|-++++++++.+..
T Consensus 207 A~g~~~al~~~G~~ 220 (289)
T 2fep_A 207 ALGIIHAAQDQGLS 220 (289)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCC
Confidence 77888888775433
No 203
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=43.97 E-value=1e+02 Score=28.72 Aligned_cols=79 Identities=18% Similarity=0.106 Sum_probs=48.9
Q ss_pred CcEEEEecchhHHHH------HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHH-HhcCCCccEEEEEecccccChHHHH
Q psy7785 302 GNIGCLVNGAGLAMA------TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRI-ISSDSNVKCILVNVFGGIVNCATIA 374 (525)
Q Consensus 302 ~rIaIitnsGG~gvl------aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~-ll~dp~vd~vlv~~~~~~~~~~~ia 374 (525)
++|++++...+.... ..+++.++|+......-..++.+.+...++++. +...|.+|+|+.. .+.+|
T Consensus 132 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a 204 (292)
T 3k4h_A 132 KQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIMAT-------DDLIG 204 (292)
T ss_dssp CCEEEEESCTTBHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEEES-------SHHHH
T ss_pred ceEEEEeCcccchhHHHHHHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEEEc-------ChHHH
Confidence 589999866443221 346788888765332223455566654444444 4456789998852 35677
Q ss_pred HHHHHHHHhcCCC
Q psy7785 375 KGLVNACKSFKLS 387 (525)
Q Consensus 375 ~~i~~a~~~~~~~ 387 (525)
.++++++++.+..
T Consensus 205 ~g~~~al~~~g~~ 217 (292)
T 3k4h_A 205 LGVLSALSKKGFV 217 (292)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCC
Confidence 7888888875543
No 204
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=43.52 E-value=95 Score=29.39 Aligned_cols=81 Identities=15% Similarity=0.181 Sum_probs=50.7
Q ss_pred CcEEEEecchhHHHH------HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHH-----hc-CCCccEEEEEecccccC
Q psy7785 302 GNIGCLVNGAGLAMA------TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRII-----SS-DSNVKCILVNVFGGIVN 369 (525)
Q Consensus 302 ~rIaIitnsGG~gvl------aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~l-----l~-dp~vd~vlv~~~~~~~~ 369 (525)
+||++++...+.... ..+++.++|+......-..++.+.+.-.++++.+ ++ .|.+|+|+..
T Consensus 132 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~~~------- 204 (303)
T 3kke_A 132 SRIAFISGTAIHDTAQRRKEGYLETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAVVVA------- 204 (303)
T ss_dssp CSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCSEEEES-------
T ss_pred CeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHhcchhhhcCCCCCcEEEEC-------
Confidence 589999865442211 2367888888654333345666666655555555 44 6889998852
Q ss_pred hHHHHHHHHHHHHhcCCCCc
Q psy7785 370 CATIAKGLVNACKSFKLSIP 389 (525)
Q Consensus 370 ~~~ia~~i~~a~~~~~~~kP 389 (525)
.+.+|-++.+++++.+...|
T Consensus 205 nd~~A~g~~~al~~~G~~vP 224 (303)
T 3kke_A 205 SVNAAVGALSTALRLGLRVP 224 (303)
T ss_dssp SHHHHHHHHHHHHHTTCCTT
T ss_pred CHHHHHHHHHHHHHcCCCCC
Confidence 35677888888887654433
No 205
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=43.51 E-value=1.6e+02 Score=27.07 Aligned_cols=81 Identities=12% Similarity=0.010 Sum_probs=47.3
Q ss_pred CcEEEEecch-h-----HHH-----HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHh-cCCCccEEEEEecccccC
Q psy7785 302 GNIGCLVNGA-G-----LAM-----ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIIS-SDSNVKCILVNVFGGIVN 369 (525)
Q Consensus 302 ~rIaIitnsG-G-----~gv-----laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll-~dp~vd~vlv~~~~~~~~ 369 (525)
+||++++... + ... -..+.+.++|++...-.-..++.+.+.-.++++.++ +.|.+|+++..
T Consensus 115 ~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~------- 187 (276)
T 2h0a_A 115 PIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYITRHSQEGGRLALRHFLEKASPPLNVFAG------- 187 (276)
T ss_dssp CEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEEECSSHHHHHHHHHHHHTTCCSSEEEECS-------
T ss_pred CeEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCCChHHeeecCCChHHHHHHHHHHHhCCCCCCEEEEC-------
Confidence 4788887654 3 111 134778888876432111234555555445555554 45789988831
Q ss_pred hHHHHHHHHHHHHhcCCCCc
Q psy7785 370 CATIAKGLVNACKSFKLSIP 389 (525)
Q Consensus 370 ~~~ia~~i~~a~~~~~~~kP 389 (525)
.+.+|.++++++++.+...|
T Consensus 188 ~d~~a~g~~~al~~~g~~vP 207 (276)
T 2h0a_A 188 ADQVALGVLEEAVRLGLTPG 207 (276)
T ss_dssp SHHHHHHHHHHHHTTSCTTT
T ss_pred CcHHHHHHHHHHHHcCCCCC
Confidence 35677788888887554434
No 206
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=42.35 E-value=99 Score=28.75 Aligned_cols=81 Identities=19% Similarity=0.169 Sum_probs=46.2
Q ss_pred CcEEEEecchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhc-CCCccEEEEEecccccChHHHH
Q psy7785 302 GNIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISS-DSNVKCILVNVFGGIVNCATIA 374 (525)
Q Consensus 302 ~rIaIitnsGG~gv------laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~-dp~vd~vlv~~~~~~~~~~~ia 374 (525)
++|++++...+... -..+++.++|++.....-..++.+.+.-.++++.+++ .+++|+|+.. .+.+|
T Consensus 127 ~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a 199 (289)
T 1dbq_A 127 REIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCG-------GDIMA 199 (289)
T ss_dssp CSEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEES-------CHHHH
T ss_pred CeEEEEecCCccccHHHHHHHHHHHHHHCCCCCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEEEC-------CcHHH
Confidence 58999876533211 1346778888764322223455555554555555554 5789998852 25667
Q ss_pred HHHHHHHHhcCCCCc
Q psy7785 375 KGLVNACKSFKLSIP 389 (525)
Q Consensus 375 ~~i~~a~~~~~~~kP 389 (525)
.++++++++.+...|
T Consensus 200 ~g~~~al~~~G~~vP 214 (289)
T 1dbq_A 200 MGALCAADEMGLRVP 214 (289)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHcCCCCC
Confidence 788888777544333
No 207
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=42.19 E-value=2.2e+02 Score=26.59 Aligned_cols=104 Identities=15% Similarity=0.142 Sum_probs=58.7
Q ss_pred CCCccc-cCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCe--EEEcChhHHHHHHHHhhhcCCCCcE
Q psy7785 410 KLPLIF-ASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPL--IFASDLDEAASLVNACKSFKLSIPL 486 (525)
Q Consensus 410 Gvpvf~-~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv--~lA~s~deAv~~~~aa~~~~~G~PV 486 (525)
++||.. .-+.-+-++++....++.....+ .-.+.. ....+.+-.-.|+++ ....+.+|+...++.+++ .|+-|
T Consensus 82 ~iPVV~I~vs~~Dil~aL~~a~~~~~kIav-Vg~~~~-~~~~~~i~~ll~~~i~~~~~~~~ee~~~~i~~l~~--~G~~v 157 (225)
T 2pju_A 82 SVPVILIKPSGYDVLQFLAKAGKLTSSIGV-VTYQET-IPALVAFQKTFNLRLDQRSYITEEDARGQINELKA--NGTEA 157 (225)
T ss_dssp SSCEEEECCCHHHHHHHHHHTTCTTSCEEE-EEESSC-CHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHHHH--TTCCE
T ss_pred CCCEEEecCCHHHHHHHHHHHHhhCCcEEE-EeCchh-hhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHH--CCCCE
Confidence 577664 44556666666555432211111 111111 123444444457777 778888888887776766 48888
Q ss_pred EEEEecCChHHHHHhhhhCCCCceeccCHHHHHHHhH
Q psy7785 487 VVRLEGTNVQEGKRILDESKLPLIFASDLDEAANWFI 523 (525)
Q Consensus 487 VlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (525)
|+= ... .-++-.+.|++..++.+ .+++.+|+
T Consensus 158 VVG---~~~--~~~~A~~~Gl~~vlI~s-~eSI~~Ai 188 (225)
T 2pju_A 158 VVG---AGL--ITDLAEEAGMTGIFIYS-AATVRQAF 188 (225)
T ss_dssp EEE---SHH--HHHHHHHTTSEEEESSC-HHHHHHHH
T ss_pred EEC---CHH--HHHHHHHcCCcEEEECC-HHHHHHHH
Confidence 653 322 23444457788777776 67777765
No 208
>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=41.63 E-value=1.1e+02 Score=29.53 Aligned_cols=95 Identities=15% Similarity=0.088 Sum_probs=53.9
Q ss_pred eeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccccc--ChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHH---H
Q psy7785 331 FLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIV--NCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKR---I 405 (525)
Q Consensus 331 PlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~--~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~---~ 405 (525)
|.|=-|..+.+.+.+.++.+.+. +|+++++-..|.. -..+=-..+++...+ +.||++..+++...++.+ .
T Consensus 9 Pf~~dg~iD~~~l~~lv~~li~~--v~gl~v~GttGE~~~Ls~~Er~~v~~~~~~---rvpviaGvg~~~t~~ai~la~~ 83 (283)
T 2pcq_A 9 PFDREGRLDEEAFRELAQALEPL--VDGLLVYGSNGEGVHLTPEERARGLRALRP---RKPFLVGLMEETLPQAEGALLE 83 (283)
T ss_dssp CBCTTCCBCHHHHHHHHHHHGGG--SSCCEETCTTTTGGGSCHHHHHHHHHTCCC---SSCCEEEECCSSHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHHhh--CCEEEECCcCcCchhcCHHHHHHHHHHHHh---CCcEEEeCCCCCHHHHHHHHHH
Confidence 44444778888899999999887 9999986444421 112112233444333 688888777655555543 3
Q ss_pred HhhCCC-------CccccC-CHHHHHHHHHHhh
Q psy7785 406 LDESKL-------PLIFAS-DLDEAASLVNACK 430 (525)
Q Consensus 406 L~~~Gv-------pvf~~~-s~~~Av~Al~~l~ 430 (525)
..+.|. |.|... +.+..++.+.+.+
T Consensus 84 A~~~Gadavlv~~P~y~~~~~~~~l~~~f~~va 116 (283)
T 2pcq_A 84 AKAAGAMALLATPPRYYHGSLGAGLLRYYEALA 116 (283)
T ss_dssp HHHHTCSEEEECCCCTTGGGTTTHHHHHHHHHH
T ss_pred HHhcCCCEEEecCCcCCCCCCHHHHHHHHHHHh
Confidence 344554 555323 4444444444444
No 209
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=41.62 E-value=1.1e+02 Score=28.54 Aligned_cols=79 Identities=13% Similarity=-0.008 Sum_probs=48.0
Q ss_pred CcEEEEecchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhc--CC-CccEEEEEecccccChHH
Q psy7785 302 GNIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISS--DS-NVKCILVNVFGGIVNCAT 372 (525)
Q Consensus 302 ~rIaIitnsGG~gv------laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~--dp-~vd~vlv~~~~~~~~~~~ 372 (525)
+||++++...+... -..+++.++|++.....-..++.+.+.-.++++.+++ .| .+|+|+.. .+.
T Consensus 126 ~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~-------~d~ 198 (287)
T 3bbl_A 126 RRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGYILRGEGTFEVGRAMTLHLLDLSPERRPTAIMTL-------NDT 198 (287)
T ss_dssp CCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSCTTTSCSEEEES-------SHH
T ss_pred CeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHHhhCCCCCCcEEEEC-------CcH
Confidence 58999986543211 1246778888764322113455566655555655554 56 89998852 356
Q ss_pred HHHHHHHHHHhcCCC
Q psy7785 373 IAKGLVNACKSFKLS 387 (525)
Q Consensus 373 ia~~i~~a~~~~~~~ 387 (525)
+|.++++++++.+..
T Consensus 199 ~a~g~~~al~~~G~~ 213 (287)
T 3bbl_A 199 MAIGAMAAARERGLT 213 (287)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCC
Confidence 777888888775443
No 210
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=39.66 E-value=1.1e+02 Score=27.43 Aligned_cols=122 Identities=11% Similarity=0.152 Sum_probs=71.0
Q ss_pred CcEEEEecc------hhHHHHHHHHHHHcCCCCCCee--eecCCCCHHHHHHHHHHHhc-----CCCccEEEEEe--c-c
Q psy7785 302 GNIGCLVNG------AGLAMATMDIIKLHGGEPANFL--DVGGGVNEESIIQAFRIISS-----DSNVKCILVNV--F-G 365 (525)
Q Consensus 302 ~rIaIitns------GG~gvlaaD~~~~~Gl~~aNPl--Dl~g~a~~~~~~~al~~ll~-----dp~vd~vlv~~--~-~ 365 (525)
-||+||... ..+---+.|.+.++|.+..|.. .+-|. .| +.-+.+.|.+ ...+|+++..- . +
T Consensus 17 ~ri~IV~arfn~~I~~~Ll~gA~~~L~~~Gv~~~~i~v~~VPGa--fE-iP~aak~la~~~~~~~~~yDavIaLG~VIrG 93 (168)
T 1ejb_A 17 IRVGIIHARWNRVIIDALVKGAIERMASLGVEENNIIIETVPGS--YE-LPWGTKRFVDRQAKLGKPLDVVIPIGVLIKG 93 (168)
T ss_dssp CCEEEEECCTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEECSSG--GG-HHHHHHHHHHHHHHTTCCCSEEEEEEEEECC
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcH--HH-HHHHHHHHHhhccccCCCcCEEEEecccccC
Confidence 478888753 2455557799999998876654 33343 22 4445566665 67899999742 2 3
Q ss_pred ccc----ChHHHHHHHHHHHHhcCCCCcEEEE-eCCcchHHHHHHHhhCCCCc--cccCCHHHHHHHHHHhhc
Q psy7785 366 GIV----NCATIAKGLVNACKSFKLSIPLVVR-LEGTNVQEGKRILDESKLPL--IFASDLDEAASLVNACKS 431 (525)
Q Consensus 366 ~~~----~~~~ia~~i~~a~~~~~~~kPivv~-~~g~~~~~~~~~L~~~Gvpv--f~~~s~~~Av~Al~~l~~ 431 (525)
+.. .|..++++|.++.-+ +++||... +...+.+++.. ++|..- -..+--.+|+.++.++..
T Consensus 94 ~T~Hfd~Va~~vs~Gl~~vsL~--~~vPV~~GVLT~~~~eQA~~---Rag~~~~~~~~nkG~eaA~aAlem~~ 161 (168)
T 1ejb_A 94 STMHFEYISDSTTHALMNLQEK--VDMPVIFGLLTCMTEEQALA---RAGIDEAHSMHNHGEDWGAAAVEMAV 161 (168)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHH--HTSCBCCEEEEESSHHHHHH---HBTCSTTCCSCBHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHhh--cCCCEEEEEecCCCHHHHHH---hcCccccccccchHHHHHHHHHHHHH
Confidence 332 245667788887665 68999743 33334455543 334422 001335566666666543
No 211
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=39.23 E-value=1.8e+02 Score=28.37 Aligned_cols=97 Identities=8% Similarity=0.058 Sum_probs=59.3
Q ss_pred CeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHH
Q psy7785 330 NFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGK 403 (525)
Q Consensus 330 NPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~ 403 (525)
-|.|=.|..+.+.+.+.++.+.+ .++|+++++-..|. ... ..+.+..++... .+.||++..++++..++.
T Consensus 18 TPf~~dg~iD~~~l~~lv~~li~-~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~---grvpviaGvg~~~t~~ai 93 (309)
T 3fkr_A 18 TTFADTGDLDLASQKRAVDFMID-AGSDGLCILANFSEQFAITDDERDVLTRTILEHVA---GRVPVIVTTSHYSTQVCA 93 (309)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHH-TTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHT---TSSCEEEECCCSSHHHHH
T ss_pred CCCCcCCCcCHHHHHHHHHHHHH-cCCCEEEECccccCcccCCHHHHHHHHHHHHHHhC---CCCcEEEecCCchHHHHH
Confidence 45555678888889999999886 58999998644442 122 234444444433 468999877665555554
Q ss_pred H---HHhhCCC-------Ccc---ccCCHHHHHHHHHHhh
Q psy7785 404 R---ILDESKL-------PLI---FASDLDEAASLVNACK 430 (525)
Q Consensus 404 ~---~L~~~Gv-------pvf---~~~s~~~Av~Al~~l~ 430 (525)
+ ...+.|. |+| ...+.+..++.+.+..
T Consensus 94 ~la~~A~~~Gadavlv~~Pyy~~~~~~s~~~l~~~f~~va 133 (309)
T 3fkr_A 94 ARSLRAQQLGAAMVMAMPPYHGATFRVPEAQIFEFYARVS 133 (309)
T ss_dssp HHHHHHHHTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEcCCCCccCCCCCHHHHHHHHHHHH
Confidence 3 4445565 555 2345666555555544
No 212
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=39.12 E-value=91 Score=29.07 Aligned_cols=81 Identities=12% Similarity=0.153 Sum_probs=49.5
Q ss_pred CcEEEEecchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHh-cCCCccEEEEEecccccChHHHH
Q psy7785 302 GNIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIIS-SDSNVKCILVNVFGGIVNCATIA 374 (525)
Q Consensus 302 ~rIaIitnsGG~gv------laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll-~dp~vd~vlv~~~~~~~~~~~ia 374 (525)
++|++++...+... -..+++.++|+......-..++.+.+...++++.++ ..|.+|+++.. .+.+|
T Consensus 128 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a 200 (289)
T 3g85_A 128 KSAAAILTESLNDAMDNRNKGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALFCN-------SDSIA 200 (289)
T ss_dssp CBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEEES-------SHHHH
T ss_pred CEEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcEEEEc-------CCHHH
Confidence 58999986543321 123677788876433222355666666445555544 46789998852 35677
Q ss_pred HHHHHHHHhcCCCCc
Q psy7785 375 KGLVNACKSFKLSIP 389 (525)
Q Consensus 375 ~~i~~a~~~~~~~kP 389 (525)
.++.+++++.+...|
T Consensus 201 ~g~~~al~~~g~~vP 215 (289)
T 3g85_A 201 LGVISVLNKRQISIP 215 (289)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHcCCCCC
Confidence 788888887654333
No 213
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=39.02 E-value=68 Score=28.54 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=37.6
Q ss_pred cEEEEecchh--------------HHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEE
Q psy7785 303 NIGCLVNGAG--------------LAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVN 362 (525)
Q Consensus 303 rIaIitnsGG--------------~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~ 362 (525)
|+||||.|=- .|-+.+..+.+.|.++....=+ +| +.+.+.+++....+..++|.|+..
T Consensus 17 ~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV-~D-d~~~i~~al~~~~a~~~~DlVitt 88 (178)
T 3iwt_A 17 NFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLV-PD-DKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp EEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEE-CS-CHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred EEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEe-CC-CHHHHHHHHHHHHhcCCCCEEEec
Confidence 8999998731 2446677888888764332222 22 245677888877777788877753
No 214
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=37.93 E-value=1.2e+02 Score=28.25 Aligned_cols=79 Identities=14% Similarity=0.146 Sum_probs=45.6
Q ss_pred CcEEEEecchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhc-CCCccEEEEEecccccChHHHH
Q psy7785 302 GNIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISS-DSNVKCILVNVFGGIVNCATIA 374 (525)
Q Consensus 302 ~rIaIitnsGG~gv------laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~-dp~vd~vlv~~~~~~~~~~~ia 374 (525)
++|++++...+... -..+++.++|++...-.-..++.+.+.-.++++.+++ .+++|+|++. .+.+|
T Consensus 140 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a 212 (296)
T 3brq_A 140 QEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVAS-------NDDMA 212 (296)
T ss_dssp CSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECCCSSHHHHHHHHHHHHTC--CCSEEEES-------SHHHH
T ss_pred ceEEEEcCCCCCccHHHHHHHHHHHHHHcCCCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEEEEC-------ChHHH
Confidence 58999986543211 1246777788764322123455566655555555554 5789998852 25567
Q ss_pred HHHHHHHHhcCCC
Q psy7785 375 KGLVNACKSFKLS 387 (525)
Q Consensus 375 ~~i~~a~~~~~~~ 387 (525)
.++++++++.+..
T Consensus 213 ~g~~~al~~~g~~ 225 (296)
T 3brq_A 213 IGAMKALHERGVA 225 (296)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCC
Confidence 7777877765433
No 215
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=37.74 E-value=1.2e+02 Score=28.08 Aligned_cols=78 Identities=21% Similarity=0.276 Sum_probs=48.7
Q ss_pred CcEEEEecchhHH----HHHHHHHHHcCCCCCCeeeecCCCCHHH-HHHHHHHHhcCCCccEEEEEecccccChHHHHHH
Q psy7785 302 GNIGCLVNGAGLA----MATMDIIKLHGGEPANFLDVGGGVNEES-IIQAFRIISSDSNVKCILVNVFGGIVNCATIAKG 376 (525)
Q Consensus 302 ~rIaIitnsGG~g----vlaaD~~~~~Gl~~aNPlDl~g~a~~~~-~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~ 376 (525)
++|++++...+.. --..+++.++|+.....+ ..++.+.+. +..+.+.+...|.+|+|+.. .+.+|-+
T Consensus 119 ~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a~g 190 (280)
T 3gyb_A 119 THIAHLRVGSGAGLRRFESFEATMRAHGLEPLSND-YLGPAVEHAGYTETLALLKEHPEVTAIFSS-------NDITAIG 190 (280)
T ss_dssp CSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECC-CCSCCCHHHHHHHHHHHHHHCTTCCEEEES-------SHHHHHH
T ss_pred CeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCccc-ccCCCCHHHHHHHHHHHHhCCCCCCEEEEC-------ChHHHHH
Confidence 4799988776650 012356777777654223 556666665 44445555567899998852 2566778
Q ss_pred HHHHHHhcCCC
Q psy7785 377 LVNACKSFKLS 387 (525)
Q Consensus 377 i~~a~~~~~~~ 387 (525)
+.+++++.+..
T Consensus 191 ~~~al~~~g~~ 201 (280)
T 3gyb_A 191 ALGAARELGLR 201 (280)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHcCCC
Confidence 88887775433
No 216
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=37.57 E-value=1.3e+02 Score=29.36 Aligned_cols=104 Identities=13% Similarity=0.012 Sum_probs=53.9
Q ss_pred cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecC----------C----CCHHHHHHHHHHHh-cCCCccEEEEEecccc
Q psy7785 303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGG----------G----VNEESIIQAFRIIS-SDSNVKCILVNVFGGI 367 (525)
Q Consensus 303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g----------~----a~~~~~~~al~~ll-~dp~vd~vlv~~~~~~ 367 (525)
|||||..||-.|-.-+.++...+....--+|... . .+.+.+.+.++.+. +|+++|+|+|..+...
T Consensus 5 rvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~~ 84 (312)
T 3o9z_A 5 RFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNHL 84 (312)
T ss_dssp EEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGGG
T ss_pred EEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCchh
Confidence 7999999876777778888877653211111111 0 11222222223333 7899999997544321
Q ss_pred cChHHHHHHHHHHHHhcCCCCcEEEEe-CCcchHHHHH---HHhhCCCCcc
Q psy7785 368 VNCATIAKGLVNACKSFKLSIPLVVRL-EGTNVQEGKR---ILDESKLPLI 414 (525)
Q Consensus 368 ~~~~~ia~~i~~a~~~~~~~kPivv~~-~g~~~~~~~~---~L~~~Gvpvf 414 (525)
. ++-+..+++ .+|+|++=- ...+..++.+ .-++.|+.++
T Consensus 85 --H---~~~~~~al~---aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 127 (312)
T 3o9z_A 85 --H---YPQIRMALR---LGANALSEKPLVLWPEEIARLKELEARTGRRVY 127 (312)
T ss_dssp --H---HHHHHHHHH---TTCEEEECSSSCSCHHHHHHHHHHHHHHCCCEE
T ss_pred --h---HHHHHHHHH---CCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 1 222333333 367776532 2223444433 3446788765
No 217
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=37.55 E-value=2.2e+02 Score=25.23 Aligned_cols=119 Identities=11% Similarity=-0.035 Sum_probs=67.2
Q ss_pred CcEEEEecc------hhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcC-----CCccEEEEEe--c-ccc
Q psy7785 302 GNIGCLVNG------AGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSD-----SNVKCILVNV--F-GGI 367 (525)
Q Consensus 302 ~rIaIitns------GG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~d-----p~vd~vlv~~--~-~~~ 367 (525)
-||+||... ..+---+.|.+.++| .| +|+.--+-.-.+.-+.+.+.+. .++|+++..- . |+.
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G---~~-i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~VIrG~T 88 (157)
T 2i0f_A 13 PHLLIVEARFYDDLADALLDGAKAALDEAG---AT-YDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGET 88 (157)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHHHTT---CE-EEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEEECCSS
T ss_pred cEEEEEEEeCcHHHHHHHHHHHHHHHHHcC---CC-eEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeeeecCCc
Confidence 367777643 234445678899999 33 3442212222344556666665 7899999742 2 333
Q ss_pred c----ChHHHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHhhCCCCccccCCHHHHHHHHHHhhc
Q psy7785 368 V----NCATIAKGLVNACKSFKLSIPLVVRLEG-TNVQEGKRILDESKLPLIFASDLDEAASLVNACKS 431 (525)
Q Consensus 368 ~----~~~~ia~~i~~a~~~~~~~kPivv~~~g-~~~~~~~~~L~~~Gvpvf~~~s~~~Av~Al~~l~~ 431 (525)
. .|..++++|.+..-+ +++||...... .+.+++..+- |...- +--.+|+.+..++.+
T Consensus 89 ~Hfd~Va~~v~~gl~~vsl~--~~vPV~~GVLT~~~~eQA~~Ra---g~~~~--nkG~eaA~aAlem~~ 150 (157)
T 2i0f_A 89 YHFDIVSNESCRALTDLSVE--ESIAIGNGILTVENEEQAWVHA---RREDK--DKGGFAARAALTMIG 150 (157)
T ss_dssp STTHHHHHHHHHHHHHHHHH--TTCCEEEEEEEESSHHHHHHHH---CTTTT--CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhh--cCCCEEEEEeCCCCHHHHHHHh---Ccccc--ccHHHHHHHHHHHHH
Confidence 3 245667788877666 78999865433 3455554432 32211 335566666655543
No 218
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=37.13 E-value=1.1e+02 Score=28.60 Aligned_cols=81 Identities=14% Similarity=0.010 Sum_probs=49.4
Q ss_pred CcEEEEecchhHHHH------HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhc-CCCccEEEEEecccccChHHHH
Q psy7785 302 GNIGCLVNGAGLAMA------TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISS-DSNVKCILVNVFGGIVNCATIA 374 (525)
Q Consensus 302 ~rIaIitnsGG~gvl------aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~-dp~vd~vlv~~~~~~~~~~~ia 374 (525)
+||++++...+.... ..+++.++|+.........++.+.+...++++.+++ .|.+|+|+.. .+.+|
T Consensus 128 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~A 200 (288)
T 3gv0_A 128 KRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDGIVSI-------SGSST 200 (288)
T ss_dssp CEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEEEES-------CHHHH
T ss_pred CeEEEEcCCcccchHHHHHHHHHHHHHHcCCCcchhheeccccchHHHHHHHHHHHhCCCCCcEEEEc-------CcHHH
Confidence 589999766443221 236777777754322223455566665555555554 5789998852 35677
Q ss_pred HHHHHHHHhcCCCCc
Q psy7785 375 KGLVNACKSFKLSIP 389 (525)
Q Consensus 375 ~~i~~a~~~~~~~kP 389 (525)
-++.+++++.+...|
T Consensus 201 ~g~~~al~~~g~~vP 215 (288)
T 3gv0_A 201 IALVAGFEAAGVKIG 215 (288)
T ss_dssp HHHHHHHHTTTCCTT
T ss_pred HHHHHHHHHcCCCCC
Confidence 788888887654433
No 219
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=36.91 E-value=1.3e+02 Score=28.12 Aligned_cols=81 Identities=12% Similarity=0.120 Sum_probs=46.9
Q ss_pred CcEEEEecchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHH-HhcCCCccEEEEEecccccChHHHH
Q psy7785 302 GNIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRI-ISSDSNVKCILVNVFGGIVNCATIA 374 (525)
Q Consensus 302 ~rIaIitnsGG~gv------laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~-ll~dp~vd~vlv~~~~~~~~~~~ia 374 (525)
+||++++...+... -..+++.++|++...-.-..++.+.+.-.++++. +.+.|.+|+|+.. .+.+|
T Consensus 129 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~A 201 (290)
T 2rgy_A 129 RKLAVISGPFTASDNVERLDGFFDELARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPFTGLFCA-------NDTMA 201 (290)
T ss_dssp CSEEEEESCTTCHHHHHHHHHHHHHHHTTTCCGGGSCEEECCSSHHHHHHHHHHHHHHTCCCSEEEES-------SHHHH
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCCCcccEEecCCChhHHHHHHHHHHhCCCCCcEEEEC-------CcHHH
Confidence 58999986543211 1236677777754221112355555554444444 4456789998852 35667
Q ss_pred HHHHHHHHhcCCCCc
Q psy7785 375 KGLVNACKSFKLSIP 389 (525)
Q Consensus 375 ~~i~~a~~~~~~~kP 389 (525)
.++.+++++.+...|
T Consensus 202 ~g~~~al~~~G~~vP 216 (290)
T 2rgy_A 202 VSALARFQQLGISVP 216 (290)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHcCCCCC
Confidence 788888877544333
No 220
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=36.81 E-value=40 Score=33.42 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=38.4
Q ss_pred CCcEEEEecchhHH----HHHHHHHHHcCCCCCC---eeeecC--CCCHHHHHHHHHHHhcCCCccEEEEE
Q psy7785 301 DGNIGCLVNGAGLA----MATMDIIKLHGGEPAN---FLDVGG--GVNEESIIQAFRIISSDSNVKCILVN 362 (525)
Q Consensus 301 ~~rIaIitnsGG~g----vlaaD~~~~~Gl~~aN---PlDl~g--~a~~~~~~~al~~ll~dp~vd~vlv~ 362 (525)
+.+|+||+.|++.. -.+...++..|+++.. -.+-.+ ..+.+.=.+-|..+..||+||+|+..
T Consensus 17 Gd~I~ivaPSs~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~ 87 (311)
T 1zl0_A 17 DGRVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCL 87 (311)
T ss_dssp CSEEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEES
T ss_pred cCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCCEEEEc
Confidence 57899999999863 2345677888986421 111111 12333333445566789999999864
No 221
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=36.76 E-value=3.1e+02 Score=26.81 Aligned_cols=166 Identities=12% Similarity=0.152 Sum_probs=87.5
Q ss_pred CCeee-ecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHH
Q psy7785 329 ANFLD-VGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQE 401 (525)
Q Consensus 329 aNPlD-l~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~ 401 (525)
--|.| =-|..+.+.+.+.++.+.+. ++|+++++-..|. ... ..+.+..++... .+.||++..++++..+
T Consensus 19 vTPf~~~dg~iD~~~l~~lv~~li~~-Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~---grvpviaGvg~~~t~~ 94 (318)
T 3qfe_A 19 VTFFDSKTDTLDLASQERYYAYLARS-GLTGLVILGTNAEAFLLTREERAQLIATARKAVG---PDFPIMAGVGAHSTRQ 94 (318)
T ss_dssp CCCEETTTTEECHHHHHHHHHHHHTT-TCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHC---TTSCEEEECCCSSHHH
T ss_pred eCCccCCCCCCCHHHHHHHHHHHHHc-CCCEEEeCccccChhhCCHHHHHHHHHHHHHHhC---CCCcEEEeCCCCCHHH
Confidence 34566 56778888899999998864 8999998644442 122 234444444332 4689998776655555
Q ss_pred HHH---HHhhCCC-------Cccc--cCCHHHHHHHHHHhhcccCCCCeEE-EeCCCCHHHHHHHHHHCCCCeEEEcChh
Q psy7785 402 GKR---ILDESKL-------PLIF--ASDLDEAASLVNACKSFKLSIPLVV-RLEGTNVQEGKRILDESKLPLIFASDLD 468 (525)
Q Consensus 402 ~~~---~L~~~Gv-------pvf~--~~s~~~Av~Al~~l~~~~~~~P~~~-~l~g~~e~eak~LL~ayGIpv~lA~s~d 468 (525)
+.+ ...+.|. |.|. +.+.+..++.+.+..+. ...|+.. ..++.+ .|+.+ +.+
T Consensus 95 ai~la~~a~~~Gadavlv~~P~y~~kp~~~~~l~~~f~~ia~a-~~lPiilYn~P~~t----------~g~~l----~~~ 159 (318)
T 3qfe_A 95 VLEHINDASVAGANYVLVLPPAYFGKATTPPVIKSFFDDVSCQ-SPLPVVIYNFPGVC----------NGIDL----DSD 159 (318)
T ss_dssp HHHHHHHHHHHTCSEEEECCCCC---CCCHHHHHHHHHHHHHH-CSSCEEEEECCC--------------CCC----CHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCCCCHHHHHHHHHHHHhh-CCCCEEEEeCCccc----------CCCCC----CHH
Confidence 544 3445565 5332 13455555555444431 2345443 233211 02211 333
Q ss_pred HHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhhh-CCCCceeccCHHHH
Q psy7785 469 EAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDE-SKLPLIFASDLDEA 518 (525)
Q Consensus 469 eAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 518 (525)
...+ .+++. .-=+-+|-.+.+...-.+++.. .+-.+.++.-.|+.
T Consensus 160 ~~~~---La~~~--pnIvgiKdssgd~~~~~~~~~~~~~~~f~v~~G~d~~ 205 (318)
T 3qfe_A 160 MITT---IARKN--PNVVGVKLTCASVGKITRLAATLPPAAFSVFGGQSDF 205 (318)
T ss_dssp HHHH---HHHHC--TTEEEEEESSCCHHHHHHHHHHSCGGGCEEEESCGGG
T ss_pred HHHH---HHhhC--CCEEEEEeCCCCHHHHHHHHHhcCCCCEEEEEecHHH
Confidence 3333 34332 2235688888888887777764 22234445444443
No 222
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=36.75 E-value=1.5e+02 Score=27.00 Aligned_cols=122 Identities=16% Similarity=0.079 Sum_probs=59.9
Q ss_pred CcEEEEecchhHHHH--HHHHHHHcCCCC-------------CCe-eeecCCCCHHHHHHHHHHHhcCCCccEEEEEecc
Q psy7785 302 GNIGCLVNGAGLAMA--TMDIIKLHGGEP-------------ANF-LDVGGGVNEESIIQAFRIISSDSNVKCILVNVFG 365 (525)
Q Consensus 302 ~rIaIitnsGG~gvl--aaD~~~~~Gl~~-------------aNP-lDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~ 365 (525)
.++.+||-+|..|+| +++.+.+.|+.. .|+ ++-.-....-..++.+-.-+ -|++++ .++
T Consensus 32 ~g~~lV~GGg~~GiM~aa~~gA~~~gG~~iGv~p~~l~~~e~~~~~~~~~~~~~~~~~Rk~~~~~~----sda~Iv-lPG 106 (191)
T 1t35_A 32 QGIGLVYGGSRVGLMGTIADAIMENGGTAIGVMPSGLFSGEVVHQNLTELIEVNGMHERKAKMSEL----ADGFIS-MPG 106 (191)
T ss_dssp TTCEEEECCCCSHHHHHHHHHHHTTTCCEEEEEETTCCHHHHTTCCCSEEEEESHHHHHHHHHHHH----CSEEEE-CSC
T ss_pred CCCEEEECCCcccHHHHHHHHHHHcCCeEEEEeCchhcccccccCCCCccccCCCHHHHHHHHHHH----CCEEEE-eCC
Confidence 357788876533555 558888888631 222 11100001111233332222 244443 566
Q ss_pred cccChHHHHHHHHHHHHhcCCCCcEEEEeC-Cc--chHHHHHHHhhCCCC-------ccccCCHHHHHHHHHHh
Q psy7785 366 GIVNCATIAKGLVNACKSFKLSIPLVVRLE-GT--NVQEGKRILDESKLP-------LIFASDLDEAASLVNAC 429 (525)
Q Consensus 366 ~~~~~~~ia~~i~~a~~~~~~~kPivv~~~-g~--~~~~~~~~L~~~Gvp-------vf~~~s~~~Av~Al~~l 429 (525)
|.-..+++++.+.-..-. +.+|||++.-. |- .-.+-.+.+.+.|.- +..++++++++..+.++
T Consensus 107 G~GTl~El~e~lt~~q~g-~~~kPvvll~~~g~~~~l~~~l~~~~~~Gfi~~~~~~~~~~~~~~~e~~~~l~~~ 179 (191)
T 1t35_A 107 GFGTYEELFEVLCWAQIG-IHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHSSSRPDELIEQMQNY 179 (191)
T ss_dssp CHHHHHHHHHHHHTTSCS-SCCCCEEEECGGGTTHHHHHHHHHHHHTTSSCTTHHHHEEEESSHHHHHHHHHTC
T ss_pred CccHHHHHHHHHHHHHhC-CCCCCEEEecCCcccchHHHHHHHHHHCCCCCHHHcCeEEEeCCHHHHHHHHHHh
Confidence 654456666665432111 25699987532 21 111122344555531 22258999999888654
No 223
>3uq8_A DNA ligase; adenylated protein, ATP-grAsp, rossman fold, adenylation; HET: DNA NAD AMP; 1.70A {Haemophilus influenzae} PDB: 3pn1_A* 3bac_A*
Probab=36.62 E-value=53 Score=32.82 Aligned_cols=91 Identities=18% Similarity=0.161 Sum_probs=59.5
Q ss_pred HHhhCCCCccccCCHHHHHHHHHHhhccc--CCCCeE-----E-EeCC----CCHHHHHHHHHHCCCCe----EEEcChh
Q psy7785 405 ILDESKLPLIFASDLDEAASLVNACKSFK--LSIPLV-----V-RLEG----TNVQEGKRILDESKLPL----IFASDLD 468 (525)
Q Consensus 405 ~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~--~~~P~~-----~-~l~g----~~e~eak~LL~ayGIpv----~lA~s~d 468 (525)
...+.|-+.| .+|-.|+.-..+..+.. ...|+. . ...+ .+..+..+.|++.|+|+ .++.+.+
T Consensus 186 ~~~~~g~~~f--aNPRNaAAGsLRqld~~ita~R~L~ff~y~~~~~~~~~~~~t~~e~l~~L~~~Gf~v~~~~~~~~~~~ 263 (322)
T 3uq8_A 186 YALEHNEKTF--ANPRNAAAGSLRQLDPNITSKRPLVLNAYGIGIAEGVDLPTTHYARLQWLKSIGIPVNPEIRLCNGAD 263 (322)
T ss_dssp HHHHTTCCCC--SSHHHHHHHHHTCSCHHHHTTSCCEEEEEEEEEEESCCCCSBHHHHHHHHHHTTCCCCTTCEEEESHH
T ss_pred HHHHhCCccc--cchhHHHHHHHhhcChhhhhcCccEEEEEeccccCCCCCCCCHHHHHHHHHHcCCCCCCCcEEeCCHH
Confidence 4456789999 89988776544321111 122321 1 1121 46789999999999998 8899999
Q ss_pred HHHHHHHHhhhcC--CCCc---EEEEEecCChHH
Q psy7785 469 EAASLVNACKSFK--LSIP---LVVRLEGTNVQE 497 (525)
Q Consensus 469 eAv~~~~aa~~~~--~G~P---VVlKi~~~~~~~ 497 (525)
++.+..+...+.+ ..|+ ||+|+..-..++
T Consensus 264 ev~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~ 297 (322)
T 3uq8_A 264 EVLGFYRDIQNKRSSLGYDIDGTVLKINDIALQN 297 (322)
T ss_dssp HHHHHHHHHHHTTTTTSSCEEEEEEEESBHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCeEEEEecCHHHHH
Confidence 9988766554433 3666 999996654443
No 224
>1ta8_A DNA ligase, NAD-dependent; nucleotidyl transferase fold; HET: DNA NMN; 1.80A {Enterococcus faecalis} SCOP: d.142.2.2 PDB: 3ba8_A* 1tae_A* 3ba9_A* 3baa_A* 3bab_A*
Probab=36.03 E-value=54 Score=32.88 Aligned_cols=91 Identities=13% Similarity=0.114 Sum_probs=58.7
Q ss_pred HHhhCCCCccccCCHHHHHHHHHHhhccc--CCCCeE--E-EeC---C---CCHHHHHHHHHHCCCCe----EEEcChhH
Q psy7785 405 ILDESKLPLIFASDLDEAASLVNACKSFK--LSIPLV--V-RLE---G---TNVQEGKRILDESKLPL----IFASDLDE 469 (525)
Q Consensus 405 ~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~--~~~P~~--~-~l~---g---~~e~eak~LL~ayGIpv----~lA~s~de 469 (525)
...+.|-+.| .+|-.|+.-..+..+.. ...|+. + .+. + .+..+..+.|++.|+|+ .++.+.++
T Consensus 189 ~~~~~g~~~f--aNPRNaAAGsLrqld~~ita~R~L~ff~y~i~~~~~~~~~t~~e~l~~L~~~GF~v~~~~~~~~~~~e 266 (332)
T 1ta8_A 189 EREENGQDIF--ANPRNAAAGSLRQLDTKIVAKRNLNTFLYTVADFGPMKAKTQFEALEELSAIGFRTNPERQLCQSIDE 266 (332)
T ss_dssp HHHHTTCCCC--SSHHHHHHHHHTCSBHHHHHTSCCEEEEEEESCCTTCCCSBHHHHHHHHHHTTCCCCTTCEEESSHHH
T ss_pred HHHhcCCccc--cChHHHHHHHHHccChhhHhhCCCEEEEEecccccCCCCCCHHHHHHHHHHcCCCCCCcceEeCCHHH
Confidence 3346788889 89888765543322110 112221 1 111 1 46778999999999999 79999999
Q ss_pred HHHHHHHhhhcC--CCCc---EEEEEecCChHH
Q psy7785 470 AASLVNACKSFK--LSIP---LVVRLEGTNVQE 497 (525)
Q Consensus 470 Av~~~~aa~~~~--~G~P---VVlKi~~~~~~~ 497 (525)
+.+..+...+.+ ..|+ ||+|+.....++
T Consensus 267 v~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~ 299 (332)
T 1ta8_A 267 VWAYIEEYHEKRSTLPYEIDGIVIKVNEFALQD 299 (332)
T ss_dssp HHHHHHHHHHTGGGSSSCEEEEEEEESBHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEecCHHHHH
Confidence 988766554333 4676 999997654443
No 225
>1b04_A Protein (DNA ligase); DNA replication; 2.80A {Geobacillus stearothermophilus} SCOP: d.142.2.2
Probab=35.84 E-value=55 Score=32.61 Aligned_cols=91 Identities=18% Similarity=0.136 Sum_probs=56.4
Q ss_pred HHhhCCCCccccCCHHHHHHHHHHhhccc--CCCCeE--E-EeC---C---CCHHHHHHHHHHCCCCe----EEEcChhH
Q psy7785 405 ILDESKLPLIFASDLDEAASLVNACKSFK--LSIPLV--V-RLE---G---TNVQEGKRILDESKLPL----IFASDLDE 469 (525)
Q Consensus 405 ~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~--~~~P~~--~-~l~---g---~~e~eak~LL~ayGIpv----~lA~s~de 469 (525)
...+.|-+.| .+|-.|+.-..+..+.. ...|+. + .+. + .+..+..+.|++.|+|+ .++.+.++
T Consensus 183 ~~~~~g~~~f--aNpRNaAAGsLrqld~~ita~R~L~ff~y~~~~~~~~~~~t~~e~l~~L~~~Gf~v~~~~~~~~~~~e 260 (318)
T 1b04_A 183 ERKARGEELF--ANPRNAAAGSLRQLDPKVAASRQLDLFVYGLADAEALGIASHSEALDYLQALGFKVNPERRRCANIDE 260 (318)
T ss_dssp HHHHC--CCC--SCHHHHHHHHHHSSCHHHHHHTCCEEEEEEETTTTTTTCCBHHHHHHHHHHTTCCCCTTCEEESSHHH
T ss_pred HHHHcCCCcc--chhhHHHHHHHHccChhhHhhCCCEEEEEecccccCCCCCCHHHHHHHHHHcCCCCCCcceEeCCHHH
Confidence 3346788889 88887665543322110 012221 1 121 1 46778999999999999 79999999
Q ss_pred HHHHHHHhhhcC--CCCc---EEEEEecCChHH
Q psy7785 470 AASLVNACKSFK--LSIP---LVVRLEGTNVQE 497 (525)
Q Consensus 470 Av~~~~aa~~~~--~G~P---VVlKi~~~~~~~ 497 (525)
..+..+...+.+ ..|+ ||+|+.....++
T Consensus 261 v~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~ 293 (318)
T 1b04_A 261 VIAFVSEWHDKRPQLPYEIDGIVIKVDSFAQQR 293 (318)
T ss_dssp HHHHHHHHHHHSTTCSSCEEEEEEEECBHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCCcEEEEecCHHHHH
Confidence 988766554333 3666 999996654443
No 226
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=35.46 E-value=69 Score=28.54 Aligned_cols=87 Identities=15% Similarity=0.246 Sum_probs=56.7
Q ss_pred cEEEEecc------hhHHHHHHHHHHHcCCCCCCee--eecCCCCHHHHHHHHHHHhcCCCccEEEEEec---cccc---
Q psy7785 303 NIGCLVNG------AGLAMATMDIIKLHGGEPANFL--DVGGGVNEESIIQAFRIISSDSNVKCILVNVF---GGIV--- 368 (525)
Q Consensus 303 rIaIitns------GG~gvlaaD~~~~~Gl~~aNPl--Dl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~---~~~~--- 368 (525)
||||+... ..+---+.|.+.++|.+..|.- .+-|. -.+.-+.+.|.+..++|+++..-+ |+..
T Consensus 12 ri~IV~arfn~~I~~~Ll~gA~~~l~~~gv~~~~i~v~~VPGa---fEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd 88 (158)
T 1di0_A 12 KIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGA---YEIPLHAKTLARTGRYAAIVGAAFVIDGGIYDHD 88 (158)
T ss_dssp EEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSG---GGHHHHHHHHHHTSCCSEEEEEEECCCCSSBCCH
T ss_pred EEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcH---HHHHHHHHHHHhcCCCCEEEEeeccccCCCcHHH
Confidence 67777643 2445557799999998755442 23332 225567788888889999997422 3332
Q ss_pred -ChHHHHHHHHHHHHhcCCCCcEEEEe
Q psy7785 369 -NCATIAKGLVNACKSFKLSIPLVVRL 394 (525)
Q Consensus 369 -~~~~ia~~i~~a~~~~~~~kPivv~~ 394 (525)
.|..++++|.++.-+ +++||....
T Consensus 89 ~Va~~vs~Gl~~v~L~--~~vPV~~GV 113 (158)
T 1di0_A 89 FVATAVINGMMQVQLE--TEVPVLSVV 113 (158)
T ss_dssp HHHHHHHHHHHHHHHH--HCCCEEEEE
T ss_pred HHHHHHHHHHHHHHhh--cCCCEEEEe
Confidence 346677888887666 689998653
No 227
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=35.43 E-value=1.5e+02 Score=28.43 Aligned_cols=80 Identities=15% Similarity=0.085 Sum_probs=49.5
Q ss_pred CcEEEEecchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHH
Q psy7785 302 GNIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAK 375 (525)
Q Consensus 302 ~rIaIitnsGG~gv------laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~ 375 (525)
+||++++...+... -..+++.++|++.....-+.++.+.+.-.++++.+++. .+|+|+.. .+.+|-
T Consensus 181 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~ai~~~-------~d~~A~ 252 (332)
T 2o20_A 181 KKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLER-GATSAVVS-------HDTVAV 252 (332)
T ss_dssp SSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEECSCCSHHHHHHHHHHHHHT-TCCEEEES-------CHHHHH
T ss_pred CeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHhcc-CCCEEEEC-------ChHHHH
Confidence 58999986543221 12467888887653222234566666655666666665 78888852 356777
Q ss_pred HHHHHHHhcCCCCc
Q psy7785 376 GLVNACKSFKLSIP 389 (525)
Q Consensus 376 ~i~~a~~~~~~~kP 389 (525)
++.+++++.+...|
T Consensus 253 g~~~al~~~G~~vP 266 (332)
T 2o20_A 253 GLLSAMMDKGVKVP 266 (332)
T ss_dssp HHHHHHHHTTCCTT
T ss_pred HHHHHHHHcCCCCc
Confidence 88888887554334
No 228
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=35.42 E-value=3.2e+02 Score=26.61 Aligned_cols=154 Identities=10% Similarity=0.083 Sum_probs=88.5
Q ss_pred CCee-eecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc-c--cCh---HHHHHHHHHHHHhcCCCCcEEEEeCCcchHH
Q psy7785 329 ANFL-DVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG-I--VNC---ATIAKGLVNACKSFKLSIPLVVRLEGTNVQE 401 (525)
Q Consensus 329 aNPl-Dl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~-~--~~~---~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~ 401 (525)
--|. |=-|..+.+.+.+.++-+.+. ++|+++++-..| . ... ..+.+..++... .+.||++..++ +..+
T Consensus 20 vTPF~~~dg~iD~~~l~~lv~~li~~-Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~---grvpViaGvg~-st~~ 94 (314)
T 3d0c_A 20 IVPFLEGTREIDWKGLDDNVEFLLQN-GIEVIVPNGNTGEFYALTIEEAKQVATRVTELVN---GRATVVAGIGY-SVDT 94 (314)
T ss_dssp CCCBCTTTCCBCHHHHHHHHHHHHHT-TCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHT---TSSEEEEEECS-SHHH
T ss_pred eccccCCCCCCCHHHHHHHHHHHHHc-CCCEEEECcccCChhhCCHHHHHHHHHHHHHHhC---CCCeEEecCCc-CHHH
Confidence 3455 445788888899999998875 799999754333 1 122 234444444433 36899887766 5556
Q ss_pred HHH---HHhhCCC-------CccccCCHHHHHHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHCCCCeEEEc-----C
Q psy7785 402 GKR---ILDESKL-------PLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFAS-----D 466 (525)
Q Consensus 402 ~~~---~L~~~Gv-------pvf~~~s~~~Av~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ayGIpv~lA~-----s 466 (525)
+.+ ...+.|. |.|...+.+..++.+.+ +.++.++|+.+.. +
T Consensus 95 ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~------------------------va~a~~lPiilYn~tg~l~ 150 (314)
T 3d0c_A 95 AIELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRN------------------------IIEALDAPSIIYFKDAHLS 150 (314)
T ss_dssp HHHHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHH------------------------HHHHSSSCEEEEECCTTSC
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHH------------------------HHHhCCCCEEEEeCCCCcC
Confidence 544 3345565 44533444443333332 3334455552221 3
Q ss_pred hhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCC--CceeccCHHH
Q psy7785 467 LDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKL--PLIFASDLDE 517 (525)
Q Consensus 467 ~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 517 (525)
.+...+ .+ +. .-=+-+|-.+.+...-.++++..+. .+.++.-.|+
T Consensus 151 ~~~~~~---La-~~--pnIvgiKdssgd~~~~~~~~~~~~~~~~f~v~~G~d~ 197 (314)
T 3d0c_A 151 DDVIKE---LA-PL--DKLVGIKYAINDIQRVTQVMRAVPKSSNVAFICGTAE 197 (314)
T ss_dssp THHHHH---HT-TC--TTEEEEEECCCCHHHHHHHHHHSCGGGCCEEEETTHH
T ss_pred HHHHHH---HH-cC--CCEEEEEeCCCCHHHHHHHHHhcCCCCCEEEEEeCcH
Confidence 444444 33 31 2236689999999988888876332 4556766666
No 229
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=35.28 E-value=1.2e+02 Score=29.56 Aligned_cols=104 Identities=13% Similarity=0.060 Sum_probs=53.2
Q ss_pred cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecC----------C----CCHHHHHHHHHHHh--cCCCccEEEEEeccc
Q psy7785 303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGG----------G----VNEESIIQAFRIIS--SDSNVKCILVNVFGG 366 (525)
Q Consensus 303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g----------~----a~~~~~~~al~~ll--~dp~vd~vlv~~~~~ 366 (525)
|||||..||-.|-.-+..+...|....--+|... . .+.+.+.+.++.|. +|+++|+|+|..+..
T Consensus 5 rvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~~ 84 (318)
T 3oa2_A 5 NFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSPNY 84 (318)
T ss_dssp EEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCGG
T ss_pred EEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCcH
Confidence 7999998876777777888877653211111110 0 11222333334444 489999999754432
Q ss_pred ccChHHHHHHHHHHHHhcCCCCcEEEEe-CCcchHHHHH---HHhhCCCCcc
Q psy7785 367 IVNCATIAKGLVNACKSFKLSIPLVVRL-EGTNVQEGKR---ILDESKLPLI 414 (525)
Q Consensus 367 ~~~~~~ia~~i~~a~~~~~~~kPivv~~-~g~~~~~~~~---~L~~~Gvpvf 414 (525)
. . ++-+..+++ .+|+|++=- ...+..++.+ .-++.|+.++
T Consensus 85 ~--H---~~~~~~al~---aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 128 (318)
T 3oa2_A 85 L--H---YPHIAAGLR---LGCDVICEKPLVPTPEMLDQLAVIERETDKRLY 128 (318)
T ss_dssp G--H---HHHHHHHHH---TTCEEEECSSCCSCHHHHHHHHHHHHHHTCCEE
T ss_pred H--H---HHHHHHHHH---CCCeEEEECCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 1 1 222233333 356666522 2223344433 3345677654
No 230
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=35.19 E-value=70 Score=29.51 Aligned_cols=60 Identities=17% Similarity=0.272 Sum_probs=37.2
Q ss_pred eeecCCCCHH---HHHHHHHHHhcCCCccEEEE--EecccccChHHHHHHHHHHHHhcCCCCcEEEEeCC
Q psy7785 332 LDVGGGVNEE---SIIQAFRIISSDSNVKCILV--NVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEG 396 (525)
Q Consensus 332 lDl~g~a~~~---~~~~al~~ll~dp~vd~vlv--~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g 396 (525)
+-+.|..+.. .+.+.|..+.++++++.|++ |.+||.. .-+..|.+..+. .++|+++...|
T Consensus 30 i~l~G~I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPGG~v---~a~~~I~~~i~~--~~~pV~~~v~g 94 (208)
T 2cby_A 30 IFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSI---SAGMAIYDTMVL--APCDIATYAMG 94 (208)
T ss_dssp EEECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCH---HHHHHHHHHHHH--CSSCEEEEEEE
T ss_pred EEEcCEECHHHHHHHHHHHHHHHhCCCCCCEEEEEECCCCCH---HHHHHHHHHHHh--cCCCEEEEECc
Confidence 4455555543 46666766677777777665 5566632 234566677776 56898876555
No 231
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=34.81 E-value=2.6e+02 Score=25.28 Aligned_cols=119 Identities=16% Similarity=0.127 Sum_probs=67.8
Q ss_pred EEEEeCCcchHHHHHHHhh-CCCCccc-cCCHHHHHHHHHHhhcccCCCCeEEEeCC-CCHHHHHHHHHHCCCCe--EEE
Q psy7785 390 LVVRLEGTNVQEGKRILDE-SKLPLIF-ASDLDEAASLVNACKSFKLSIPLVVRLEG-TNVQEGKRILDESKLPL--IFA 464 (525)
Q Consensus 390 ivv~~~g~~~~~~~~~L~~-~Gvpvf~-~~s~~~Av~Al~~l~~~~~~~P~~~~l~g-~~e~eak~LL~ayGIpv--~lA 464 (525)
++++.+|+. ..|++ -++||.. .-+.-+-++++....++..+..++ -.+. .. ..+.+=.-.|+++ ...
T Consensus 54 VIISRGgta-----~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~kIavv-g~~~~~~--~~~~~~~ll~~~i~~~~~ 125 (196)
T 2q5c_A 54 AIISRGATS-----DYIKKSVSIPSISIKVTRFDTMRAVYNAKRFGNELALI-AYKHSIV--DKHEIEAMLGVKIKEFLF 125 (196)
T ss_dssp EEEEEHHHH-----HHHHTTCSSCEEEECCCHHHHHHHHHHHGGGCSEEEEE-EESSCSS--CHHHHHHHHTCEEEEEEE
T ss_pred EEEECChHH-----HHHHHhCCCCEEEEcCCHhHHHHHHHHHHhhCCcEEEE-eCcchhh--HHHHHHHHhCCceEEEEe
Confidence 565555541 22332 3678775 456666677776655432211111 1111 11 2233333347777 778
Q ss_pred cChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhhhCCCCceeccCHHHHHHHhH
Q psy7785 465 SDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAANWFI 523 (525)
Q Consensus 465 ~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (525)
.+.+|+...++.+++ .|+-||+= ... .-++-.+.|++..++.+=++++.+|+
T Consensus 126 ~~~~e~~~~i~~l~~--~G~~vvVG---~~~--~~~~A~~~Gl~~vli~sg~eSI~~Ai 177 (196)
T 2q5c_A 126 SSEDEITTLISKVKT--ENIKIVVS---GKT--VTDEAIKQGLYGETINSGEESLRRAI 177 (196)
T ss_dssp CSGGGHHHHHHHHHH--TTCCEEEE---CHH--HHHHHHHTTCEEEECCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--CCCeEEEC---CHH--HHHHHHHcCCcEEEEecCHHHHHHHH
Confidence 888888887777777 49998654 322 23444557888888888677766665
No 232
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=34.53 E-value=36 Score=33.30 Aligned_cols=62 Identities=13% Similarity=0.095 Sum_probs=48.6
Q ss_pred CcEEEEecchhHHHH-----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecc
Q psy7785 302 GNIGCLVNGAGLAMA-----TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFG 365 (525)
Q Consensus 302 ~rIaIitnsGG~gvl-----aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~ 365 (525)
..+++|-.|--++.. -.-+|++.|+ .--.++..+.+.+.+.+.++.+-+||+||+++|..+.
T Consensus 28 P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi--~~~~~lp~~~s~~ell~~I~~lN~D~~v~GIlvqlPL 94 (276)
T 3ngx_A 28 PSLKLIQIGDNEAASIYARAKIRRGKKIGI--AVDLEKYDDISMKDLLKRIDDLAKDPQINGIMIENPL 94 (276)
T ss_dssp CEEEEEEESCCHHHHHHHHHHHHHHHHHTC--EEEEEEESSCCHHHHHHHHHHHHHCTTCCEEEECSCC
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHHHHCCe--EEEEECCCCCCHHHHHHHHHHHcCCCCCcEEEEeCCC
Confidence 467777666554432 3357888899 6677888889999999999999999999999997654
No 233
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=33.99 E-value=55 Score=32.42 Aligned_cols=64 Identities=14% Similarity=0.152 Sum_probs=47.4
Q ss_pred CcEEEEecchhHHHHH-----HHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 302 GNIGCLVNGAGLAMAT-----MDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 302 ~rIaIitnsGG~gvla-----aD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
..+++|-.|--++... .-+|++.|+. ..-.++..+.+.+.+.+.++.+-+||+||+|+|..+..
T Consensus 54 P~LavIlVG~dpaS~~Yv~~K~k~c~~vGi~-s~~~~lp~~~se~ell~~I~~LN~D~~V~GIlVQlPLP 122 (303)
T 4b4u_A 54 PILATILVGDDGASATYVRMKGNACRRVGMD-SLKIELPQETTTEQLLAEIEKLNANPDVHGILLQHPVP 122 (303)
T ss_dssp CEEEEEEESCCHHHHHHHHHHHHHHHHTTCE-EEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCC
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHHHHcCCe-EEEEecCccCCHHHHHHHHHHhcCCCCccEEEEeCCCc
Confidence 3566666555554432 4578888886 34456778888889999999999999999999976543
No 234
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*
Probab=33.86 E-value=2.6e+02 Score=28.10 Aligned_cols=112 Identities=13% Similarity=0.027 Sum_probs=69.0
Q ss_pred HHHHHHHHcCC--CCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cCh---HHHHHHHHHHHHhcCCC
Q psy7785 316 ATMDIIKLHGG--EPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNC---ATIAKGLVNACKSFKLS 387 (525)
Q Consensus 316 laaD~~~~~Gl--~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~---~~ia~~i~~a~~~~~~~ 387 (525)
+++|.....|+ ..--|.|=-|..+.+.+.+.++.+.+ .++|+++++-..|. ... ..+.+..++... .+
T Consensus 53 ~~~~~~~~~Gi~~alvTPF~~dg~ID~~al~~lv~~li~-~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~---gr 128 (360)
T 4dpp_A 53 TNTDDIKALRVITAIKTPYLPDGRFDLEAYDDLVNIQIQ-NGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFG---GS 128 (360)
T ss_dssp -CHHHHHTCCEEEECCCCBCTTSSBCHHHHHHHHHHHHH-TTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHT---TT
T ss_pred cChhhcccCCeEEEEeCcCCCCCCcCHHHHHHHHHHHHH-cCCCEEEecccccChhhCCHHHHHHHHHHHHHHhC---CC
Confidence 45566666665 23556666788888989999998886 58999998644442 122 233444444333 36
Q ss_pred CcEEEEeCCcchHHHHH---HHhhCCC-------CccccCCHHHHHHHHHHhhc
Q psy7785 388 IPLVVRLEGTNVQEGKR---ILDESKL-------PLIFASDLDEAASLVNACKS 431 (525)
Q Consensus 388 kPivv~~~g~~~~~~~~---~L~~~Gv-------pvf~~~s~~~Av~Al~~l~~ 431 (525)
.||++..+++...++.+ ...+.|. |+|...+.+..++.+.+.++
T Consensus 129 vpViaGvg~~st~eai~la~~A~~~Gadavlvv~PyY~k~sq~gl~~hf~~IA~ 182 (360)
T 4dpp_A 129 IKVIGNTGSNSTREAIHATEQGFAVGMHAALHINPYYGKTSIEGLIAHFQSVLH 182 (360)
T ss_dssp SEEEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHTTGG
T ss_pred CeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHH
Confidence 89988766655555543 4455676 66654566666666555543
No 235
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=33.64 E-value=49 Score=32.38 Aligned_cols=64 Identities=8% Similarity=0.073 Sum_probs=47.3
Q ss_pred CcEEEEecchhHHHH-----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 302 GNIGCLVNGAGLAMA-----TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 302 ~rIaIitnsGG~gvl-----aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
..+++|-.|-=++.. -.-+|++.|+.. --.++..+.+.+.+.+.++.+-+||+||+++|..+..
T Consensus 33 P~Lavilvg~dpas~~Yv~~k~k~~~~~Gi~~-~~~~lp~~~s~~ell~~i~~lN~D~~v~GIlvqlPlP 101 (281)
T 2c2x_A 33 PGLGTILVGDDPGSQAYVRGKHADCAKVGITS-IRRDLPADISTATLNETIDELNANPDCTGYIVQLPLP 101 (281)
T ss_dssp CEEEEEEESCCHHHHHHHHHHHHHHHHHTCEE-EEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSCCC
T ss_pred ceEEEEEeCCChhhHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCC
Confidence 457776666444433 335688889863 3456788888888999999999999999999976543
No 236
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=33.60 E-value=1.3e+02 Score=28.75 Aligned_cols=79 Identities=18% Similarity=0.156 Sum_probs=48.5
Q ss_pred CcEEEEecch-hHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHh-cCCCccEEEEEecccccChHHH
Q psy7785 302 GNIGCLVNGA-GLAM------ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIIS-SDSNVKCILVNVFGGIVNCATI 373 (525)
Q Consensus 302 ~rIaIitnsG-G~gv------laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll-~dp~vd~vlv~~~~~~~~~~~i 373 (525)
+||++++... +... -..+++.++|++.....-..++.+.+.-.++++.++ ..|.+|+|+.. .+.+
T Consensus 178 ~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~-------nd~~ 250 (332)
T 2hsg_A 178 KNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVG-------TDEM 250 (332)
T ss_dssp SCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCSEEEES-------SHHH
T ss_pred CEEEEEeCCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHcCCCCCeEEEEC-------ChHH
Confidence 5899998764 3221 134678888876533222345556665445555554 45789998852 3567
Q ss_pred HHHHHHHHHhcCCC
Q psy7785 374 AKGLVNACKSFKLS 387 (525)
Q Consensus 374 a~~i~~a~~~~~~~ 387 (525)
|-++.+++++.+..
T Consensus 251 A~g~~~al~~~G~~ 264 (332)
T 2hsg_A 251 ALGVIHGAQDRGLN 264 (332)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCC
Confidence 77888888875443
No 237
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=32.76 E-value=95 Score=29.00 Aligned_cols=78 Identities=21% Similarity=0.302 Sum_probs=42.8
Q ss_pred CcEEEEecchhHHHH------HHHHHHHcCCCCCCeeeecCCCCHHH-HHHHHHHHhcCCCccEEEEEecccccChHHHH
Q psy7785 302 GNIGCLVNGAGLAMA------TMDIIKLHGGEPANFLDVGGGVNEES-IIQAFRIISSDSNVKCILVNVFGGIVNCATIA 374 (525)
Q Consensus 302 ~rIaIitnsGG~gvl------aaD~~~~~Gl~~aNPlDl~g~a~~~~-~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia 374 (525)
++|++++...+.... ..+++.++|+......-..++.+.+. +..+.+.+.+.|++|+|+.. .+.+|
T Consensus 126 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a 198 (291)
T 3egc_A 126 TRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALLTS-------SHRIT 198 (291)
T ss_dssp CSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEEES-------SHHHH
T ss_pred CEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhCCCCCcEEEEC-------CcHHH
Confidence 589999876543221 23677777876433222234444443 44444455567899998852 35667
Q ss_pred HHHHHHHHhcCC
Q psy7785 375 KGLVNACKSFKL 386 (525)
Q Consensus 375 ~~i~~a~~~~~~ 386 (525)
.++++++++.+.
T Consensus 199 ~g~~~al~~~g~ 210 (291)
T 3egc_A 199 EGAMQALNVLGL 210 (291)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHcCC
Confidence 788888777543
No 238
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=32.10 E-value=2.6e+02 Score=24.42 Aligned_cols=118 Identities=18% Similarity=0.144 Sum_probs=66.9
Q ss_pred CcEEEEecch---hHH-HHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHH
Q psy7785 302 GNIGCLVNGA---GLA-MATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGL 377 (525)
Q Consensus 302 ~rIaIitnsG---G~g-vlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i 377 (525)
++|-+.|.+| -.| .+.+..++..|..+ +|++.+.+++.+.+++.. -+.|.|.+..... ........+
T Consensus 19 ~~vlla~~~gd~HdiG~~~va~~l~~~G~eV---i~lG~~~p~e~lv~aa~~----~~~diV~lS~~~~--~~~~~~~~~ 89 (161)
T 2yxb_A 19 YKVLVAKMGLDGHDRGAKVVARALRDAGFEV---VYTGLRQTPEQVAMAAVQ----EDVDVIGVSILNG--AHLHLMKRL 89 (161)
T ss_dssp CEEEEEEESSSSCCHHHHHHHHHHHHTTCEE---ECCCSBCCHHHHHHHHHH----TTCSEEEEEESSS--CHHHHHHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHCCCEE---EECCCCCCHHHHHHHHHh----cCCCEEEEEeech--hhHHHHHHH
Confidence 4565555444 122 34567888888764 456667777765554433 3567666644322 334455566
Q ss_pred HHHHHhcCC-CCcEEEEeCCcchHHHHHHHhhCCCCc-cccC-CHHHHHHHHHHhh
Q psy7785 378 VNACKSFKL-SIPLVVRLEGTNVQEGKRILDESKLPL-IFAS-DLDEAASLVNACK 430 (525)
Q Consensus 378 ~~a~~~~~~-~kPivv~~~g~~~~~~~~~L~~~Gvpv-f~~~-s~~~Av~Al~~l~ 430 (525)
++.+++... +.||++ +|.-..+....+++.|+-. |... ++.+++..+..+.
T Consensus 90 i~~L~~~g~~~i~v~v--GG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~ 143 (161)
T 2yxb_A 90 MAKLRELGADDIPVVL--GGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLA 143 (161)
T ss_dssp HHHHHHTTCTTSCEEE--EECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCEEEE--eCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHH
Confidence 666665332 455554 4442333345678899984 5333 4567777776654
No 239
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=32.04 E-value=1.5e+02 Score=27.35 Aligned_cols=78 Identities=13% Similarity=0.003 Sum_probs=48.4
Q ss_pred CcEEEEecchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhc--CCCccEEEEEecccccChHHH
Q psy7785 302 GNIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISS--DSNVKCILVNVFGGIVNCATI 373 (525)
Q Consensus 302 ~rIaIitnsGG~gv------laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~--dp~vd~vlv~~~~~~~~~~~i 373 (525)
++|++++...+... -..+++.++|++.. -+.++.+.+.-.++++.+++ .|++|+|+.. .+.+
T Consensus 119 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~-------~d~~ 188 (277)
T 3cs3_A 119 KKVLLLSGPEKGYDSQERLAVSTRELTRFGIPYE---IIQGDFTEPSGYAAAKKILSQPQTEPVDVFAF-------NDEM 188 (277)
T ss_dssp SCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEE---EEECCSSHHHHHHHHHHHTTSCCCSSEEEEES-------SHHH
T ss_pred ceEEEEeCCccCccHHHHHHHHHHHHHHcCCCee---EEeCCCChhHHHHHHHHHHhcCCCCCcEEEEc-------ChHH
Confidence 58999986643221 12366777787543 23455566665566666665 5789988852 3567
Q ss_pred HHHHHHHHHhcCCCCc
Q psy7785 374 AKGLVNACKSFKLSIP 389 (525)
Q Consensus 374 a~~i~~a~~~~~~~kP 389 (525)
|.++++++++.+...|
T Consensus 189 a~g~~~al~~~g~~vP 204 (277)
T 3cs3_A 189 AIGVYKYVAETNYQMG 204 (277)
T ss_dssp HHHHHHHHTTSSCCBT
T ss_pred HHHHHHHHHHcCCCCC
Confidence 7788888887544333
No 240
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=31.67 E-value=69 Score=28.53 Aligned_cols=87 Identities=21% Similarity=0.271 Sum_probs=56.5
Q ss_pred cEEEEecc------hhHHHHHHHHHHHcCCCCCCee--eecCCCCHHHHHHHHHHHhcCCCccEEEEEec---cccc---
Q psy7785 303 NIGCLVNG------AGLAMATMDIIKLHGGEPANFL--DVGGGVNEESIIQAFRIISSDSNVKCILVNVF---GGIV--- 368 (525)
Q Consensus 303 rIaIitns------GG~gvlaaD~~~~~Gl~~aNPl--Dl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~---~~~~--- 368 (525)
|||||... ..+---+.|.+.++|.+..|.- .+-|. -.+.-+.+.|.+..++|+++..-+ |+..
T Consensus 13 ri~IV~arfn~~I~~~Ll~gA~~~l~~~Gv~~~~i~v~~VPGa---fEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd 89 (157)
T 2obx_A 13 RIAVVRARWHADIVDQCVSAFEAEMADIGGDRFAVDVFDVPGA---YEIPLHARTLAETGRYGAVLGTAFVVNGGIYRHE 89 (157)
T ss_dssp EEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSG---GGHHHHHHHHHHHTCCSEEEEEEECCCCSSBCCH
T ss_pred EEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcH---HHHHHHHHHHHhcCCCCEEEEeeccccCCCcHHH
Confidence 78887643 2455557799999998755442 23332 225556677777788999997422 3332
Q ss_pred -ChHHHHHHHHHHHHhcCCCCcEEEEe
Q psy7785 369 -NCATIAKGLVNACKSFKLSIPLVVRL 394 (525)
Q Consensus 369 -~~~~ia~~i~~a~~~~~~~kPivv~~ 394 (525)
.|..++++|.++.-+ +++||....
T Consensus 90 ~Va~~vs~Gl~~v~L~--~~vPV~~GV 114 (157)
T 2obx_A 90 FVASAVIDGMMNVQLS--TGVPVLSAV 114 (157)
T ss_dssp HHHHHHHHHHHHHHHH--HCCCEEEEE
T ss_pred HHHHHHHHHHHHHHhh--cCCCEEEEe
Confidence 346677888887666 689998653
No 241
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=31.59 E-value=85 Score=27.94 Aligned_cols=76 Identities=12% Similarity=0.073 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHHcCCCCCCeee---ecCCCCHHHHHHHHHHHhcCCCccEEEEEeccccc-----ChHHHHHHHHHHHH
Q psy7785 311 AGLAMATMDIIKLHGGEPANFLD---VGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIV-----NCATIAKGLVNACK 382 (525)
Q Consensus 311 GG~gvlaaD~~~~~Gl~~aNPlD---l~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~-----~~~~ia~~i~~a~~ 382 (525)
-.+.--+.|.+.++|.+.. ++ +-|. -.+.-+.+.|.+..++|+|+..-..|.+ .|.+++++|.++.-
T Consensus 15 ~~Ll~gA~~~L~~~G~~~~--i~~~~VPGa---fEiP~aak~la~~~~yDavIaLG~VG~T~Hfd~Va~~vs~Gl~~v~L 89 (156)
T 2b99_A 15 VDMASIAIKKLKELSPNIK--IIRKTVPGI---KDLPVACKKLLEEEGCDIVMALGMPGKAEKDKVCAHEASLGLMLAQL 89 (156)
T ss_dssp SCCHHHHHHHHHHHCTTCE--EEEEEESSG---GGHHHHHHHHHHHSCCSEEEEEECCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCe--EEEEECCcH---HHHHHHHHHHHhcCCCCEEEEecccCCcchhHHHHHHHHHHHHHHHh
Confidence 4455567899999997653 44 3332 2244566777777889999974322432 24566778888766
Q ss_pred hcCCCCcEEEE
Q psy7785 383 SFKLSIPLVVR 393 (525)
Q Consensus 383 ~~~~~kPivv~ 393 (525)
+ +++||...
T Consensus 90 ~--~~vPV~~g 98 (156)
T 2b99_A 90 M--TNKHIIEV 98 (156)
T ss_dssp H--HTCCEEEE
T ss_pred h--hCCCEEEE
Confidence 6 68999866
No 242
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural genomics, NIA national institute of allergy and infectious diseases; HET: AMP; 1.58A {Streptococcus pneumoniae} PDB: 4e94_A*
Probab=31.28 E-value=41 Score=33.87 Aligned_cols=62 Identities=19% Similarity=0.171 Sum_probs=37.8
Q ss_pred CCcEEEEecchhHH---------HHHHHHHHHcCCCCCCeeeecCC-----CCHHHHHHHHHHHhcCCCccEEEEE
Q psy7785 301 DGNIGCLVNGAGLA---------MATMDIIKLHGGEPANFLDVGGG-----VNEESIIQAFRIISSDSNVKCILVN 362 (525)
Q Consensus 301 ~~rIaIitnsGG~g---------vlaaD~~~~~Gl~~aNPlDl~g~-----a~~~~~~~al~~ll~dp~vd~vlv~ 362 (525)
..+|+||+.|+|.. -.+...++..|+++...=.+... .+++.=.+-|..+..||+||+|+..
T Consensus 5 ~D~I~ivaPSs~~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~ 80 (346)
T 4eys_A 5 VSTIGIVSLSSGIIGEDFVKHEVDLGIQRLKDLGLNPIFLPHSLKGLDFIKDHPEARAEDLIHAFSDDSIDMILCA 80 (346)
T ss_dssp CCEEEEECSSCCGGGSGGGHHHHHHHHHHHHHTTCEEEECTTTTSCHHHHHHCHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred CcEEEEEeCCCcccccccCHHHHHHHHHHHHhCCCEEEECCchhccCCccCCCHHHHHHHHHHHhhCCCCCEEEEc
Confidence 46899999999853 34567889999864221011000 1222223345556789999998854
No 243
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=30.63 E-value=4.1e+02 Score=26.34 Aligned_cols=165 Identities=10% Similarity=0.022 Sum_probs=84.9
Q ss_pred CeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHH--
Q psy7785 330 NFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKR-- 404 (525)
Q Consensus 330 NPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~-- 404 (525)
-|.|=-|..+.+.+.+.++.+.+. ++|+++++-..|. ...++-. .+++.... .+.||++..+++...++.+
T Consensus 36 TPF~~dg~ID~~~l~~lv~~li~~-Gv~Gl~v~GtTGE~~~Ls~eEr~-~vi~~~~~--grvpViaGvg~~st~eai~la 111 (344)
T 2hmc_A 36 TPCRQDRTPDFDALVRKGKELIAD-GMSAVVYCGSMGDWPLLTDEQRM-EGVERLVK--AGIPVIVGTGAVNTASAVAHA 111 (344)
T ss_dssp CCBCTTSSBCHHHHHHHHHHHHHT-TCCCEEESSGGGTGGGSCHHHHH-HHHHHHHH--TTCCEEEECCCSSHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHc-CCCEEEeCccCcChhhCCHHHHH-HHHHHHhC--CCCcEEEecCCCCHHHHHHHH
Confidence 345445788888899999998874 8999998644442 1222221 22222222 4689988776655555543
Q ss_pred -HHhhCCC-------Ccccc-CCHHHHHHHHHHhhcccCCCCeEE-EeCCCCHHHHHHHHHHCCCCeEEEcChhHHHHHH
Q psy7785 405 -ILDESKL-------PLIFA-SDLDEAASLVNACKSFKLSIPLVV-RLEGTNVQEGKRILDESKLPLIFASDLDEAASLV 474 (525)
Q Consensus 405 -~L~~~Gv-------pvf~~-~s~~~Av~Al~~l~~~~~~~P~~~-~l~g~~e~eak~LL~ayGIpv~lA~s~deAv~~~ 474 (525)
...+.|. |.|.. .+.+..++.+.+..+.....|+.. ..+ .+ |+.+ +.+...+
T Consensus 112 ~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~IA~aa~~lPiilYn~P-~t-----------g~~l----~~e~~~~-- 173 (344)
T 2hmc_A 112 VHAQKVGAKGLMVIPRVLSRGSVIAAQKAHFKAILSAAPEIPAVIYNSP-YY-----------GFAT----RADLFFA-- 173 (344)
T ss_dssp HHHHHHTCSEEEECCCCSSSTTCHHHHHHHHHHHHHHSTTSCEEEEEBG-GG-----------TBCC----CHHHHHH--
T ss_pred HHHHhcCCCEEEECCCccCCCCCHHHHHHHHHHHHhhCCCCcEEEEecC-cc-----------CCCc----CHHHHHH--
Confidence 3344454 55533 455554444444332012344432 222 11 1111 2333333
Q ss_pred HHhhhcCCCCcEEEEEecC--ChHHHHHhhhhCCCCceeccCHHHHH
Q psy7785 475 NACKSFKLSIPLVVRLEGT--NVQEGKRILDESKLPLIFASDLDEAA 519 (525)
Q Consensus 475 ~aa~~~~~G~PVVlKi~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (525)
.+.+. .-=|-+|-.+. +...-.+++...+..+.++.-.|+..
T Consensus 174 -L~a~~--pnIvGiKdssgp~d~~~~~~~~~~~~~~f~v~~G~D~~~ 217 (344)
T 2hmc_A 174 -LRAEH--KNLVGFKEFGGPADMRYAAENITSRDDEVTLMIGVDTAV 217 (344)
T ss_dssp -HHHHC--TTEEEEEECSCHHHHHHHHHHTSCSSSSCEEEECSGGGH
T ss_pred -HHhcC--CCEEEEEcCCCCCCHHHHHHHHHHcCCCEEEEECcHHHH
Confidence 20121 22356788777 78877777765333455565555443
No 244
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=30.52 E-value=49 Score=32.54 Aligned_cols=63 Identities=14% Similarity=0.177 Sum_probs=47.2
Q ss_pred CcEEEEecchhHHHH-----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecc
Q psy7785 302 GNIGCLVNGAGLAMA-----TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFG 365 (525)
Q Consensus 302 ~rIaIitnsGG~gvl-----aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~ 365 (525)
..+++|-.|-=++.. -.-+|++.|+.. --.++..+.+.+.+.+.++.+-+||+||+|+|..+.
T Consensus 34 P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~~-~~~~lp~~~s~~ell~~I~~lN~D~~V~GIlvqlPL 101 (288)
T 1b0a_A 34 PGLAVVLVGSNPASQIYVASKRKACEEVGFVS-RSYDLPETTSEAELLELIDTLNADNTIDGILVQLPL 101 (288)
T ss_dssp CEEEEEEESCCHHHHHHHHHHHHHHHHHTCEE-CCEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSC
T ss_pred ceEEEEEeCCChhHHHHHHHHHHHHHHcCCEE-EEEECCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCC
Confidence 457777666444433 335688889863 345788888888899999999999999999997654
No 245
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=30.30 E-value=63 Score=31.68 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=47.5
Q ss_pred CcEEEEecchhHHHH-----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 302 GNIGCLVNGAGLAMA-----TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 302 ~rIaIitnsGG~gvl-----aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
..+++|-.|--++.. -.-+|++.|+. .-.+.+..+.+.+.+.+.++.+-+||+||+++|..+..
T Consensus 35 P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~-~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvqlPlp 103 (285)
T 3l07_A 35 PKLVAIIVGNDPASKTYVASKEKACAQVGID-SQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLP 103 (285)
T ss_dssp CEEEEEEESCCHHHHHHHHHHHHHHHHHTCE-EEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCC
T ss_pred ceEEEEEECCCHHHHHHHHHHHHHHHHcCCe-EEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEcCCCC
Confidence 456776666554443 34577888885 34456777888889999999999999999999976643
No 246
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=30.28 E-value=49 Score=32.98 Aligned_cols=91 Identities=14% Similarity=0.147 Sum_probs=57.1
Q ss_pred HHhhCCCCccccCCHHHHHHHHHHhhccc--CCCCeE--E-Ee---CC---CCHHHHHHHHHHCCCCe----EEEcChhH
Q psy7785 405 ILDESKLPLIFASDLDEAASLVNACKSFK--LSIPLV--V-RL---EG---TNVQEGKRILDESKLPL----IFASDLDE 469 (525)
Q Consensus 405 ~L~~~Gvpvf~~~s~~~Av~Al~~l~~~~--~~~P~~--~-~l---~g---~~e~eak~LL~ayGIpv----~lA~s~de 469 (525)
...+.|-+.| .+|-.|+.-..+..+.. ...++. . .+ .+ .+..+..+.|++.|+|+ .++.+.++
T Consensus 181 ~~~~~g~~~f--aNPRNaAAGsLRqld~~ita~R~L~ff~y~~~~~~~~~~~t~~e~l~~L~~~GF~v~~~~~~~~~~~e 258 (318)
T 3jsl_A 181 EKEKNDEQLF--ANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEALDELDKLGFTTNKNRARVNNIDG 258 (318)
T ss_dssp HHBTTBCCCC--SSHHHHHHHHHSCSCHHHHHHSCCEEEEEEESCCTTCCCSBHHHHHHHHHHHTCCCCTTCEEESSHHH
T ss_pred HHHHhCCccc--cChHHHHHHHHHccChhhhhhCcceEEEEecccccCCCCCCHHHHHHHHHHCCCCcCCcceEeCCHHH
Confidence 3445788889 89988765443211100 011211 1 11 11 36678999999999998 88999999
Q ss_pred HHHHHHHhhhcC--CCCc---EEEEEecCChHH
Q psy7785 470 AASLVNACKSFK--LSIP---LVVRLEGTNVQE 497 (525)
Q Consensus 470 Av~~~~aa~~~~--~G~P---VVlKi~~~~~~~ 497 (525)
..+..+...+.+ ..|+ ||+|+..-..++
T Consensus 259 v~~~~~~~~~~R~~l~y~iDGvViKvn~~~~q~ 291 (318)
T 3jsl_A 259 VLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQD 291 (318)
T ss_dssp HHHHHHHHHHHGGGSSSCEEEEEEEESBHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCcEEEEEeCHHHHH
Confidence 988766543322 4676 999996654443
No 247
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=30.25 E-value=56 Score=35.36 Aligned_cols=78 Identities=23% Similarity=0.361 Sum_probs=47.1
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEe--cccc-cChHHHHHHH
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNV--FGGI-VNCATIAKGL 377 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~--~~~~-~~~~~ia~~i 377 (525)
.++|++|+..|-.. .|... .+....+.+.++++.+.+|+++.+|++.+ ++|. .....+.+.+
T Consensus 300 ~~~VavI~l~g~i~--------------~n~~~-~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~spGG~~~~~~~i~~~i 364 (593)
T 3bf0_A 300 GDSIGVVFANGAIM--------------DGEET-QGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAEL 364 (593)
T ss_dssp SCEEEEEEEEEEEE--------------SSSSC-TTSEEHHHHHHHHHHHHHCTTEEEEEEEEEEEEECHHHHHHHHHHH
T ss_pred CCCEEEEEEeeeec--------------CCccc-cchhHHHHHHHHHHHHHhCCCCCEEEEEecCCCCCHHHHHHHHHHH
Confidence 46799999877310 11100 12344677999999999999999999843 4442 2223333333
Q ss_pred HHHHHhcCCCCcEEEEeCC
Q psy7785 378 VNACKSFKLSIPLVVRLEG 396 (525)
Q Consensus 378 ~~a~~~~~~~kPivv~~~g 396 (525)
.+ .+. .+|||++...|
T Consensus 365 ~~-l~~--~~kPVia~v~g 380 (593)
T 3bf0_A 365 AA-ARA--AGKPVVVSMGG 380 (593)
T ss_dssp HH-HHH--TTCCEEEEEEE
T ss_pred HH-HHh--CCCCEEEEECC
Confidence 33 344 57999975443
No 248
>1wsa_A Asparaginase, asparagine amidohydrolase; periplasmic; 2.20A {Wolinella succinogenes} SCOP: c.88.1.1
Probab=30.21 E-value=61 Score=32.38 Aligned_cols=52 Identities=8% Similarity=0.043 Sum_probs=30.7
Q ss_pred CCCHHH---HHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEE
Q psy7785 337 GVNEES---IIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVR 393 (525)
Q Consensus 337 ~a~~~~---~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~ 393 (525)
+.+++. +.+.++..++++++|+++|... .....+.|-.+.-.. + .+||||+.
T Consensus 62 ~mt~~~w~~la~~I~~~~~~~~~dG~VItHG--TDTmeeTA~~Ls~~l-~--~~kPVVlT 116 (330)
T 1wsa_A 62 EMTGKVWLKLAKRVNELLAQKETEAVIITHG--TDTMEETAFFLNLTV-K--SQKPVVLV 116 (330)
T ss_dssp GCCHHHHHHHHHHHHHHHHSTTCCCEEEECC--SSSHHHHHHHHHHHC-C--CSSCEEEE
T ss_pred cCCHHHHHHHHHHHHHHhccCCCCEEEEEcC--cchHHHHHHHHHHHc-C--CCCCEEEe
Confidence 344554 5666666667788999997432 222344555443332 3 68999863
No 249
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=30.19 E-value=51 Score=32.60 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=46.8
Q ss_pred CcEEEEecchhHHHH-----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 302 GNIGCLVNGAGLAMA-----TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 302 ~rIaIitnsGG~gvl-----aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
..+++|-.|-=++.. -.-+|++.|+. .--.++..+.+.+.+.+.++.+-+||+||+|+|..+..
T Consensus 36 P~LavilvG~dpaS~~Yv~~k~k~~~~~Gi~-~~~~~lp~~~s~~ell~~I~~lN~D~~V~GIlvqlPLP 104 (301)
T 1a4i_A 36 PRLAILQVGNRDDSNLYINVKLKAAEEIGIK-ATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLD 104 (301)
T ss_dssp CEEEEEEESCCHHHHHHHHHHHHHHHHHTCE-EEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSSCC
T ss_pred CEEEEEEeCCChhHHHHHHHHHHHHHHcCCE-EEEEECCCCCCHHHHHHHHHHhcCCCCCcEEEEeccCC
Confidence 457776665433332 23568888886 33457788888888999999999999999999976543
No 250
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=30.02 E-value=2.1e+02 Score=26.63 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=45.8
Q ss_pred cEEEEecchhHHHH------HHHHHHHcCCCCCCeee-ecCCCCHHHHHHHHHHHhcC-C--CccEEEEEecccccChHH
Q psy7785 303 NIGCLVNGAGLAMA------TMDIIKLHGGEPANFLD-VGGGVNEESIIQAFRIISSD-S--NVKCILVNVFGGIVNCAT 372 (525)
Q Consensus 303 rIaIitnsGG~gvl------aaD~~~~~Gl~~aNPlD-l~g~a~~~~~~~al~~ll~d-p--~vd~vlv~~~~~~~~~~~ 372 (525)
+|++++...+.... ..+.+.++|+... +.. ..++.+.+.-.++++.+++. | ++|+|+.. .+.
T Consensus 142 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~~-------~d~ 213 (309)
T 2fvy_A 142 QFVLLKGEPGHPDAEARTTYVIKELNDKGIKTE-QLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIAN-------NDA 213 (309)
T ss_dssp EEEEEECSTTCHHHHHHHHHHHHHHHHTTCCEE-EEEEEECTTCHHHHHHHHHHHHTSTTGGGCCEEEES-------SHH
T ss_pred EEEEEEcCCCCccHHHHHHHHHHHHHhcCCceE-EEEEecCCCCHHHHHHHHHHHHHhCCCCCccEEEEC-------Cch
Confidence 68888765332211 2367777776532 222 24556666655666666664 4 79988852 356
Q ss_pred HHHHHHHHHHhcC
Q psy7785 373 IAKGLVNACKSFK 385 (525)
Q Consensus 373 ia~~i~~a~~~~~ 385 (525)
+|.++++++++.+
T Consensus 214 ~a~g~~~al~~~g 226 (309)
T 2fvy_A 214 MAMGAVEALKAHN 226 (309)
T ss_dssp HHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHcC
Confidence 6778888887754
No 251
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=29.79 E-value=2.6e+02 Score=26.67 Aligned_cols=81 Identities=10% Similarity=0.110 Sum_probs=48.5
Q ss_pred CcEEEEecchhHHHH-----HHHHHHHcCCCCCCe-eeecCCCCHHHHHHHH-HHHhcCCCccEEEEEecccccChHHHH
Q psy7785 302 GNIGCLVNGAGLAMA-----TMDIIKLHGGEPANF-LDVGGGVNEESIIQAF-RIISSDSNVKCILVNVFGGIVNCATIA 374 (525)
Q Consensus 302 ~rIaIitnsGG~gvl-----aaD~~~~~Gl~~aNP-lDl~g~a~~~~~~~al-~~ll~dp~vd~vlv~~~~~~~~~~~ia 374 (525)
+||++++........ ..+++.++|+...++ +-..+..+.+.-.+++ +.+...|.+|+|+.. .+.+|
T Consensus 179 ~~I~~i~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~-------nD~~A 251 (339)
T 3h5o_A 179 RRIGFLGAQLDERVMKRLDGYRAALDAADCRDAGLEWLDPQPSSMQMGADMLDRALAERPDCDALFCC-------NDDLA 251 (339)
T ss_dssp CSEEEEEESCCHHHHHHHHHHHHHHHHTTCCCGGGEEEECSCCCHHHHHHHHHHHHHHCTTCCEEEES-------SHHHH
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHHCCCCCCChheEecCCCCHHHHHHHHHHHHcCCCCCcEEEEC-------ChHHH
Confidence 589999765322211 336777788743332 2234556666544444 445556889998852 35678
Q ss_pred HHHHHHHHhcCCCCc
Q psy7785 375 KGLVNACKSFKLSIP 389 (525)
Q Consensus 375 ~~i~~a~~~~~~~kP 389 (525)
-++.+++++.+...|
T Consensus 252 ~g~~~al~~~G~~vP 266 (339)
T 3h5o_A 252 IGALARSQQLGIAVP 266 (339)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHcCCCCC
Confidence 888888887654444
No 252
>3nxk_A Cytoplasmic L-asparaginase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; 2.40A {Campylobacter jejuni subsp}
Probab=29.50 E-value=1.9e+02 Score=28.81 Aligned_cols=95 Identities=14% Similarity=0.017 Sum_probs=54.2
Q ss_pred HHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEe---CCcchHHHHHHHhhCCCCccccCCHHHH
Q psy7785 346 AFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRL---EGTNVQEGKRILDESKLPLIFASDLDEA 422 (525)
Q Consensus 346 al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~---~g~~~~~~~~~L~~~Gvpvf~~~s~~~A 422 (525)
.++.+++ +++++|++-.+|...-+..+.+.|.++.+ .+.|||.+. .|. .. ....+.+.|+-.-..-+|+.|
T Consensus 237 ~l~a~~~-~g~~GiVle~~G~Gn~p~~~~~~l~~a~~---~Gi~VV~~Src~~G~-V~-~~~~l~~~Gvi~~~dlt~ekA 310 (334)
T 3nxk_A 237 AAKALFE-HGTKGIVVAGSGAGSIHKNQKDVLKELLK---KGLKVVVSSRVVAGC-VA-VSDSDEKLGFISAEDLNPQKA 310 (334)
T ss_dssp HHHHHHH-TTCCEEEEEEBTTTBCCHHHHHHHHHHHT---TTCEEEEEESSSBSC-CC-CCHHHHHHTEEECTTCCHHHH
T ss_pred HHHHHHh-CCCCEEEEeeECCCCCcHHHHHHHHHHHH---CCCEEEEeCCCCCCc-cC-cccccccCCEEECCCCCHHHH
Confidence 4444444 67999999777643333566777777654 478998642 232 11 112345667622113578887
Q ss_pred HHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHC
Q psy7785 423 ASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDES 457 (525)
Q Consensus 423 v~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ay 457 (525)
...|+-... .+.+.++-++++..|
T Consensus 311 rikL~~~L~-----------~~~~~~~i~~~f~~~ 334 (334)
T 3nxk_A 311 RVLLMLALT-----------KTSDPKKIQEYFLKY 334 (334)
T ss_dssp HHHHHHHTT-----------TCCCHHHHHHHHHHC
T ss_pred HHHHHHHHh-----------CCCCHHHHHHHHhhC
Confidence 777654321 123556777777654
No 253
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=29.14 E-value=2.2e+02 Score=27.30 Aligned_cols=76 Identities=18% Similarity=0.297 Sum_probs=48.0
Q ss_pred CcEEEEecchhHHHH------HHHHHHHcCCCCCCeeeec-CCCCHHHHHHHHHHHh-cCCCccEEEEEecccccChHHH
Q psy7785 302 GNIGCLVNGAGLAMA------TMDIIKLHGGEPANFLDVG-GGVNEESIIQAFRIIS-SDSNVKCILVNVFGGIVNCATI 373 (525)
Q Consensus 302 ~rIaIitnsGG~gvl------aaD~~~~~Gl~~aNPlDl~-g~a~~~~~~~al~~ll-~dp~vd~vlv~~~~~~~~~~~i 373 (525)
++|++++...+.... ..+++.++|+. ..+. ++.+.+.-.++++.++ ..+ +|+|+.. .+.+
T Consensus 175 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~----~~~~~~~~~~~~~~~~~~~ll~~~~-~~ai~~~-------nd~~ 242 (333)
T 3jvd_A 175 MNIAALVGEESLSTTQERMRGISHAASIYGAE----VTFHFGHYSVESGEEMAQVVFNNGL-PDALIVA-------SPRL 242 (333)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE----EEEEECCSSHHHHHHHHHHHHHTCC-CSEEEEC-------CHHH
T ss_pred CeEEEEeCCCCCccHHHHHHHHHHHHHHCCCC----EEEecCCCCHHHHHHHHHHHhcCCC-CcEEEEC-------CHHH
Confidence 589999876443221 23677788776 3333 6667666445555444 456 9998852 3667
Q ss_pred HHHHHHHHHhcCCCCc
Q psy7785 374 AKGLVNACKSFKLSIP 389 (525)
Q Consensus 374 a~~i~~a~~~~~~~kP 389 (525)
|-++.+++++.+...|
T Consensus 243 A~g~~~al~~~G~~vP 258 (333)
T 3jvd_A 243 MAGVMRAFTRLNVRVP 258 (333)
T ss_dssp HHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHcCCCCC
Confidence 7788888887654433
No 254
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=29.13 E-value=94 Score=28.17 Aligned_cols=53 Identities=15% Similarity=0.251 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhcCCCccEEEE--EecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCc
Q psy7785 340 EESIIQAFRIISSDSNVKCILV--NVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGT 397 (525)
Q Consensus 340 ~~~~~~al~~ll~dp~vd~vlv--~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~ 397 (525)
.+.+...|..+.++++++.|++ |.+||.. .-+..|.+..+. .++|+++...|.
T Consensus 40 a~~i~~~L~~l~~~~~~~~I~l~InSPGG~v---~a~~~I~~~i~~--~~~pV~~~v~g~ 94 (193)
T 1yg6_A 40 ANLIVAQMLFLEAENPEKDIYLYINSPGGVI---TAGMSIYDTMQF--IKPDVSTICMGQ 94 (193)
T ss_dssp HHHHHHHHHHHHHHCSSSCEEEEEEECCBCH---HHHHHHHHHHHH--SSSCEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECcCCCH---HHHHHHHHHHHh--cCCCEEEEEeee
Confidence 3446666776666666666665 5666632 234566666666 568888766553
No 255
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=29.07 E-value=87 Score=30.14 Aligned_cols=64 Identities=11% Similarity=0.129 Sum_probs=42.7
Q ss_pred CcEEEEecchhHHH-HHHHHHHHcCCCCCCeeee-------cCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 302 GNIGCLVNGAGLAM-ATMDIIKLHGGEPANFLDV-------GGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 302 ~rIaIitnsGG~gv-laaD~~~~~Gl~~aNPlDl-------~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
+||||+|...-.-- ...+.++..|+.+..|... -|..+.+.+.++++.+ .+++.|+|++..+++
T Consensus 147 ~rvgvltp~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l-~~~gadaIvLg~CT~ 218 (273)
T 2xed_A 147 QRVALVTPYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSL-DLSEVDALVISCAVQ 218 (273)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHS-CCTTCSEEEEESSSS
T ss_pred CeEEEEcCChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHH-hhCCCCEEEEcCCCC
Confidence 68999997775433 7779999999865433221 1234456677777776 667899888762433
No 256
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=28.88 E-value=63 Score=31.92 Aligned_cols=64 Identities=11% Similarity=0.140 Sum_probs=46.3
Q ss_pred CcEEEEecchhHHHH-----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 302 GNIGCLVNGAGLAMA-----TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 302 ~rIaIitnsGG~gvl-----aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
..+++|-.|--++.. -.-+|++.|+. .-.+++..+.+.+.+.+.++.+-+||+||+++|..+..
T Consensus 38 P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~-~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVqlPLP 106 (300)
T 4a26_A 38 PGLASIIVGQRMDSKKYVQLKHKAAAEVGMA-SFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPLP 106 (300)
T ss_dssp CEEEEEEESCCHHHHHHHHHHHHHHHHTTCE-EEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSCCC
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCe-EEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEcCCCC
Confidence 356666655444332 23577888885 34456777888889999999999999999999976643
No 257
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=28.57 E-value=1.6e+02 Score=28.30 Aligned_cols=81 Identities=14% Similarity=0.120 Sum_probs=50.6
Q ss_pred CcEEEEecch--hHHH-----HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHH-HHHhcCCCccEEEEEecccccChHHH
Q psy7785 302 GNIGCLVNGA--GLAM-----ATMDIIKLHGGEPANFLDVGGGVNEESIIQAF-RIISSDSNVKCILVNVFGGIVNCATI 373 (525)
Q Consensus 302 ~rIaIitnsG--G~gv-----laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al-~~ll~dp~vd~vlv~~~~~~~~~~~i 373 (525)
+||++++... .... -..+++.++|+......-..++.+.+.-.+++ +.+...|.+|+|+.. .+.+
T Consensus 186 ~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~-------nd~~ 258 (344)
T 3kjx_A 186 RRIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEIEDREFYSGGSALAKGREMTQAMLERSPDLDFLYYS-------NDMI 258 (344)
T ss_dssp CSCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSSCCCHHHHHHHHHHHHHHSTTCCEEEES-------SHHH
T ss_pred CeEEEEecCcccCccHHHHHHHHHHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHhcCCCCCEEEEC-------CHHH
Confidence 4799988653 2111 12377888888755433345666666644444 455567889998842 3567
Q ss_pred HHHHHHHHHhcCCCCc
Q psy7785 374 AKGLVNACKSFKLSIP 389 (525)
Q Consensus 374 a~~i~~a~~~~~~~kP 389 (525)
|-++.+++++.+...|
T Consensus 259 A~g~~~al~~~g~~vP 274 (344)
T 3kjx_A 259 AAGGLLYLLEQGIDIP 274 (344)
T ss_dssp HHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHcCCCCC
Confidence 7888888887554444
No 258
>3t7a_A Inositol pyrophosphate kinase; ATP-grAsp fold, transferase; HET: ADP; 1.70A {Homo sapiens} PDB: 3t9a_A* 3t9b_A* 3t9c_A* 3t9d_A* 3t9e_A* 3t9f_A* 4gb4_A* 4hn2_A* 3t54_A* 3t99_A*
Probab=28.49 E-value=7.5 Score=38.90 Aligned_cols=39 Identities=10% Similarity=0.026 Sum_probs=26.7
Q ss_pred HhhhhhCCCCCCCccccCCHH------------HHHH-HHHhcCCCcEEEEEe
Q psy7785 14 YLVKPVSTVHSTDKVCLEDAR------------TATN-ILKDLNFKEYVIKAQ 53 (525)
Q Consensus 14 ~~~k~~~GIpvp~~~~~~~~e------------ea~~-~a~~lg~~PvVlK~~ 53 (525)
|+..++.|||+|++.++.... ++.+ ..+.+++ |+|.|+.
T Consensus 102 ~~iL~~~gIPtP~t~~~~rd~~~~~~~~~~e~~d~i~~~g~~l~k-PfVeKPv 153 (330)
T 3t7a_A 102 YSILQAEGILLPRYAILNRDPNNPKECNLIEGEDHVEVNGEVFQK-PFVEKPV 153 (330)
T ss_dssp HHHHHHTTCCCCCEEEECCBTTBGGGSSEEECSSEEEETTEEEES-SEEEEES
T ss_pred HHHHHHcCCCCCCEEEEeCCCCCccccceeccchhhhhccccccC-CeeEccc
Confidence 455558999999999987522 1111 2355676 9999984
No 259
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1
Probab=28.44 E-value=77 Score=30.43 Aligned_cols=62 Identities=10% Similarity=0.126 Sum_probs=47.7
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCC---------CCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEe
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGGE---------PANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNV 363 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~---------~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~ 363 (525)
.+.+-|+|..--..- ..++|+..|++ |.|++.++..-..+.+.+.++.|.++++|..|.-|+
T Consensus 168 ~~~~~v~t~p~~~~~-V~~aL~~~g~~~~~aei~~~P~~~v~l~~~e~~~~~~klid~Led~DDVq~Vy~N~ 238 (249)
T 1lfp_A 168 EEVHIIYTVPEELYE-VKENLEKLGVPIEKAQITWKPISTVQINDEETAQKVIKLLNALEELDDVQQVIANF 238 (249)
T ss_dssp SSEEEEEECGGGHHH-HHHHHHTTTCCCSEEEEEEEESSCEECCCHHHHHHHHHHHHHHHTSTTEEEEEECE
T ss_pred CceEEEEECHHHHHH-HHHHHHHcCCCeeeeeeEECCCCceecCCHHHHHHHHHHHHHHhcccChhhhhcCC
Confidence 456777777776665 45899999984 789999833334566999999999999999988764
No 260
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=28.32 E-value=66 Score=31.54 Aligned_cols=64 Identities=13% Similarity=0.136 Sum_probs=47.2
Q ss_pred CcEEEEecchhHHH-----HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 302 GNIGCLVNGAGLAM-----ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 302 ~rIaIitnsGG~gv-----laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
..+++|-.|--++. .-.-+|++.|+. .-.+.+..+.+.+.+.+.++.+-+||+||+++|..+..
T Consensus 36 P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~-~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVqlPLP 104 (286)
T 4a5o_A 36 PGLAVILVGTDPASQVYVAHKRKDCEEVGFL-SQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQLPLP 104 (286)
T ss_dssp CEEEEEEESCCHHHHHHHHHHHHHHHHTTCE-EEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCC
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCe-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCC
Confidence 35666666654443 234678888885 34456777888888999999999999999999976643
No 261
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=28.27 E-value=2.2e+02 Score=26.29 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=46.1
Q ss_pred CcEEEEecchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHH--Hh-cCCCccEEEEEecccccChHH
Q psy7785 302 GNIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRI--IS-SDSNVKCILVNVFGGIVNCAT 372 (525)
Q Consensus 302 ~rIaIitnsGG~gv------laaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~--ll-~dp~vd~vlv~~~~~~~~~~~ 372 (525)
+||++++...+... -..+++.++|++.. . +.++.+.+.-.++++. ++ +.|.+|+|+.. .+.
T Consensus 125 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~-~--~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~ 194 (285)
T 3c3k_A 125 KRIALINHDLAYQYAQHRESGYLNRLKFHGLDYS-R--ISYAENLDYMAGKLATFSLLKSAVKPDAIFAI-------SDV 194 (285)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCC-E--EEECSSSSHHHHHHHHHHHHSSSSCCSEEEES-------SHH
T ss_pred CeEEEEeCCCccccHHHHHHHHHHHHHHcCCCce-E--eecCCChHHHHHHHHHHHHHcCCCCCeEEEEC-------CHH
Confidence 58999986543211 12467788887654 2 2334444443444554 44 45789998852 256
Q ss_pred HHHHHHHHHHhcCCCCc
Q psy7785 373 IAKGLVNACKSFKLSIP 389 (525)
Q Consensus 373 ia~~i~~a~~~~~~~kP 389 (525)
+|.++++++++.+...|
T Consensus 195 ~A~g~~~al~~~g~~vP 211 (285)
T 3c3k_A 195 LAAGAIQALTESGLSIP 211 (285)
T ss_dssp HHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHcCCCCC
Confidence 67788888877544433
No 262
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=27.90 E-value=70 Score=31.34 Aligned_cols=64 Identities=13% Similarity=0.186 Sum_probs=47.3
Q ss_pred CcEEEEecchhHHHH-----HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEeccc
Q psy7785 302 GNIGCLVNGAGLAMA-----TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGG 366 (525)
Q Consensus 302 ~rIaIitnsGG~gvl-----aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~ 366 (525)
..+++|-.|--++.. -.-+|++.|+. .-.+.+-.+.+.+.+.+.++.+-+||+||+++|..+..
T Consensus 34 P~Lavilvg~dpaS~~Yv~~k~k~~~~~Gi~-~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvqlPlp 102 (285)
T 3p2o_A 34 SCLAVILVGDNPASQTYVKSKAKACEECGIK-SLVYHLNENITQNELLALINTLNHDDSVHGILVQLPLP 102 (285)
T ss_dssp CEEEEEEESCCHHHHHHHHHHHHHHHHHTCE-EEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSCCC
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHcCCe-EEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEecCCCC
Confidence 457777666544432 33577888885 34456777788888999999999999999999976643
No 263
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=27.59 E-value=1.1e+02 Score=27.48 Aligned_cols=59 Identities=14% Similarity=0.098 Sum_probs=39.8
Q ss_pred CcEEEEecch---------h-----HHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEE
Q psy7785 302 GNIGCLVNGA---------G-----LAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVN 362 (525)
Q Consensus 302 ~rIaIitnsG---------G-----~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~ 362 (525)
-|++|||.|= | -+-+.+..+.+.|..+.... +..| +.+.+.++++..+++.+.|.|++.
T Consensus 16 ~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~-iv~D-d~~~I~~al~~a~~~~~~DlVitt 88 (178)
T 2pjk_A 16 LNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYS-LVPD-DKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp CEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEE-EECS-CHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred CEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEE-EeCC-CHHHHHHHHHHHHhcCCCCEEEEC
Confidence 4899999883 2 45667788888887643322 2233 356688888888776668977753
No 264
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=27.51 E-value=1e+02 Score=28.59 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCCCccEEEE--EecccccChHHHHHHHHHHHHhcCCCCcEEEEeCCc
Q psy7785 341 ESIIQAFRIISSDSNVKCILV--NVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGT 397 (525)
Q Consensus 341 ~~~~~al~~ll~dp~vd~vlv--~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~ 397 (525)
+.+...|..+.+|++++.|++ |.++|.. .-...|.+..+. .++|+++...|.
T Consensus 60 ~~i~~~L~~l~~~~~~k~I~l~InSPGG~v---~ag~~I~~~i~~--~~~pV~t~v~G~ 113 (218)
T 1y7o_A 60 NSVIAQLLFLDAQDSTKDIYLYVNTPGGSV---SAGLAIVDTMNF--IKADVQTIVMGM 113 (218)
T ss_dssp HHHHHHHHHHHHHCTTSCEEEEEEECCBCH---HHHHHHHHHHHH--SSSCEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECcCCCH---HHHHHHHHHHHh--cCCCEEEEEccE
Confidence 446677777777777777665 4455532 223456666666 578998766553
No 265
>3gh1_A Predicted nucleotide-binding protein; structural genomics, protein structure initiative; 1.90A {Vibrio cholerae o1 biovar el tor str} PDB: 2pmb_A
Probab=27.02 E-value=2e+02 Score=29.97 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=38.2
Q ss_pred cEEEEEecccccChHHHHHHHHHHH-H-hcCCCCcEEEEeC-C-cchHHH-HHHH----hhCCCCcc--ccCCHHHHHHH
Q psy7785 357 KCILVNVFGGIVNCATIAKGLVNAC-K-SFKLSIPLVVRLE-G-TNVQEG-KRIL----DESKLPLI--FASDLDEAASL 425 (525)
Q Consensus 357 d~vlv~~~~~~~~~~~ia~~i~~a~-~-~~~~~kPivv~~~-g-~~~~~~-~~~L----~~~Gvpvf--~~~s~~~Av~A 425 (525)
|+ +|..+||....+++.+.+.-.. . .....|||++.-. + ...... ...+ .+...--+ .++++++++..
T Consensus 249 DA-fIaLPGG~GTLEELfE~LTw~qLgtgk~h~kPIVLln~~~~~gYwd~Ll~fL~~~v~eg~~~~~~iv~DdpeEvl~~ 327 (462)
T 3gh1_A 249 HG-IIIFPGGPGTAEELLYILGIMMHPENADQPMPIVLTGPKQSEAYFRSLDKFITDTLGEAARKHYSIAIDNPAEAARI 327 (462)
T ss_dssp SE-EEECSCSHHHHHHHHHHHHHHTSGGGTTCCCCEEEEECGGGHHHHHHHHHHHHHHHCGGGGGGCEEEESCHHHHHHH
T ss_pred CE-EEEcCCCcchHHHHHHHHHHHhcccCcCCCCCEEEEcCCCcccHHHHHHHHHHHHhhhhhhhccEEEcCCHHHHHHH
Confidence 44 4456777655678887765431 1 1125799987543 1 112222 1111 12111111 25999999999
Q ss_pred HHHh
Q psy7785 426 VNAC 429 (525)
Q Consensus 426 l~~l 429 (525)
+.+.
T Consensus 328 i~~~ 331 (462)
T 3gh1_A 328 MSNA 331 (462)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 266
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=27.01 E-value=65 Score=32.13 Aligned_cols=101 Identities=14% Similarity=0.095 Sum_probs=54.6
Q ss_pred CcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHH------------HHHHHHHHhcCCCccEEEEEecccccC
Q psy7785 302 GNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEES------------IIQAFRIISSDSNVKCILVNVFGGIVN 369 (525)
Q Consensus 302 ~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~------------~~~al~~ll~dp~vd~vlv~~~~~~~~ 369 (525)
=|||||..|..........+...|.+..--+| .+++. .+.-++.+++++++|+|+|..+.
T Consensus 27 irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d----~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~---- 98 (361)
T 3u3x_A 27 LRFAAVGLNHNHIYGQVNCLLRAGARLAGFHE----KDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVS---- 98 (361)
T ss_dssp CEEEEECCCSTTHHHHHHHHHHTTCEEEEEEC----SCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCH----
T ss_pred cEEEEECcCHHHHHHHHHHhhcCCcEEEEEEc----CCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCCh----
Confidence 38999998764433445555554543221122 12221 12335678889999999975332
Q ss_pred hHHHHHHHHHHHHhcCCCCcEEEEeC-CcchHHHH---HHHhhCCCCcc
Q psy7785 370 CATIAKGLVNACKSFKLSIPLVVRLE-GTNVQEGK---RILDESKLPLI 414 (525)
Q Consensus 370 ~~~ia~~i~~a~~~~~~~kPivv~~~-g~~~~~~~---~~L~~~Gvpvf 414 (525)
..-++-+..+++ .+|+|++=-. ..+.+++. +.-++.|+.++
T Consensus 99 -~~H~~~~~~al~---aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~ 143 (361)
T 3u3x_A 99 -SERAELAIRAMQ---HGKDVLVDKPGMTSFDQLAKLRRVQAETGRIFS 143 (361)
T ss_dssp -HHHHHHHHHHHH---TTCEEEEESCSCSSHHHHHHHHHHHHTTCCCEE
T ss_pred -HHHHHHHHHHHH---CCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 222333444444 4688877432 33344443 34456888876
No 267
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=26.97 E-value=1.7e+02 Score=23.09 Aligned_cols=56 Identities=21% Similarity=0.191 Sum_probs=33.9
Q ss_pred HHHHHHHHHCCCCe-EE-EcChhHHHHHHHHhhhcC---CCCcEEEE-----EecCChHHHHHhhhh-CC
Q psy7785 448 QEGKRILDESKLPL-IF-ASDLDEAASLVNACKSFK---LSIPLVVR-----LEGTNVQEGKRILDE-SK 506 (525)
Q Consensus 448 ~eak~LL~ayGIpv-~l-A~s~deAv~~~~aa~~~~---~G~PVVlK-----i~~~~~~~~~~~~~~-~~ 506 (525)
..+|++|...||++ .+ .+.-.++.+.+. ++. .+.|+|.= +.++..+|=++.|.+ .+
T Consensus 18 ~~aK~~L~~~gi~y~~idi~~d~~~~~~~~---~~~~G~~tVP~I~i~Dg~~l~~~~~~el~~~L~el~g 84 (92)
T 2lqo_A 18 LRLKTALTANRIAYDEVDIEHNRAAAEFVG---SVNGGNRTVPTVKFADGSTLTNPSADEVKAKLVKIAG 84 (92)
T ss_dssp HHHHHHHHHTTCCCEEEETTTCHHHHHHHH---HHSSSSSCSCEEEETTSCEEESCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCceEEEEcCCCHHHHHHHH---HHcCCCCEeCEEEEeCCEEEeCCCHHHHHHHHHHhcC
Confidence 47999999999999 33 222223333222 211 25797642 456777787777876 44
No 268
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=26.90 E-value=1.5e+02 Score=27.67 Aligned_cols=79 Identities=16% Similarity=0.100 Sum_probs=47.3
Q ss_pred CcEEEEecchhH--H----HHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHH
Q psy7785 302 GNIGCLVNGAGL--A----MATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAK 375 (525)
Q Consensus 302 ~rIaIitnsGG~--g----vlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~ 375 (525)
++|++++...+. . --..+++.++|++.....-..++.+.+.-.++++.+++.+.+|+|+.. .+.+|.
T Consensus 126 ~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~~~-------~d~~a~ 198 (290)
T 3clk_A 126 RQIGIAGIDQYPYTGRKRLAGYKKALKEANIAINQEWIKPGDYSYTSGEQAMKAFGKNTDLTGIIAA-------SDMTAI 198 (290)
T ss_dssp CSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHCTTCCCSEEEES-------SHHHHH
T ss_pred CEEEEEeCCCCCcchHHHHHHHHHHHHHcCCCCCcceEEcCCCChhhHHHHHHHHhccCCCcEEEEC-------CcHHHH
Confidence 478888654221 1 112467788887653322234555666555556655556789988852 256677
Q ss_pred HHHHHHHhcCCC
Q psy7785 376 GLVNACKSFKLS 387 (525)
Q Consensus 376 ~i~~a~~~~~~~ 387 (525)
++++++++.+..
T Consensus 199 g~~~al~~~g~~ 210 (290)
T 3clk_A 199 GILNQASSFGIE 210 (290)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 888888775443
No 269
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=26.60 E-value=70 Score=31.60 Aligned_cols=24 Identities=17% Similarity=0.065 Sum_probs=20.0
Q ss_pred cEEEEecchhHHHHHHHHHHHcCCC
Q psy7785 303 NIGCLVNGAGLAMATMDIIKLHGGE 327 (525)
Q Consensus 303 rIaIitnsGG~gvlaaD~~~~~Gl~ 327 (525)
+|+|+. ||..|.+++-++.+.|.+
T Consensus 3 ~I~ilG-gg~~g~~~~~~Ak~~G~~ 26 (363)
T 4ffl_A 3 TICLVG-GKLQGFEAAYLSKKAGMK 26 (363)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTTCE
T ss_pred EEEEEC-CCHHHHHHHHHHHHCCCE
Confidence 577774 777999999999999986
No 270
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=25.35 E-value=2.9e+02 Score=26.56 Aligned_cols=79 Identities=15% Similarity=0.114 Sum_probs=48.1
Q ss_pred CcEEEEecchhHHH------HHHHHHHHcCCCCCCeeeecCCCCHHH-HHHHHHHHhcCCCccEEEEEecccccChHHHH
Q psy7785 302 GNIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDVGGGVNEES-IIQAFRIISSDSNVKCILVNVFGGIVNCATIA 374 (525)
Q Consensus 302 ~rIaIitnsGG~gv------laaD~~~~~Gl~~aNPlDl~g~a~~~~-~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia 374 (525)
+||++++...+... -..+++.++|+++. .+ ..++.+.+. +..+.+.+...+.+|+|+.. .+.+|
T Consensus 180 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~gi~~~-~~-~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~-------nD~~A 250 (349)
T 1jye_A 180 QQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPI-AE-REGDWSAMSGFQQTMQMLNEGIVPTAMLVA-------NDQMA 250 (349)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCS-EE-EECCSSHHHHHHHHHHHHHTTCCCSEEEES-------SHHHH
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHcCCCcc-cc-ccCCCChHHHHHHHHHHHhCCCCCCEEEEC-------ChHHH
Confidence 58999986533211 13477888888642 22 345556554 44444555556789998852 35678
Q ss_pred HHHHHHHHhcCCCCc
Q psy7785 375 KGLVNACKSFKLSIP 389 (525)
Q Consensus 375 ~~i~~a~~~~~~~kP 389 (525)
-++++++++.+...|
T Consensus 251 ~g~~~al~~~G~~vP 265 (349)
T 1jye_A 251 LGAMRAITESGLRVG 265 (349)
T ss_dssp HHHHHHHHHTTCCBT
T ss_pred HHHHHHHHHcCCCCC
Confidence 888888887544333
No 271
>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}
Probab=25.33 E-value=2.5e+02 Score=27.18 Aligned_cols=104 Identities=9% Similarity=0.022 Sum_probs=49.8
Q ss_pred cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCH---HH-----HHHHHHHHhcCCCccEEEEEecccccChHHHH
Q psy7785 303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNE---ES-----IIQAFRIISSDSNVKCILVNVFGGIVNCATIA 374 (525)
Q Consensus 303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~---~~-----~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia 374 (525)
|||||..|.......+..+...|.+..--.|....... +. ...-++.+++++++|+|+|..+.. .-+
T Consensus 6 rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~-----~h~ 80 (336)
T 2p2s_A 6 RFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPC-----DRA 80 (336)
T ss_dssp EEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGG-----GHH
T ss_pred EEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChh-----hHH
Confidence 79999876433212344454445432112222211111 11 123356688899999999754422 112
Q ss_pred HHHHHHHHhcCCCCcEEEEe-CCcchHHHHH---HHhhCCCCcc
Q psy7785 375 KGLVNACKSFKLSIPLVVRL-EGTNVQEGKR---ILDESKLPLI 414 (525)
Q Consensus 375 ~~i~~a~~~~~~~kPivv~~-~g~~~~~~~~---~L~~~Gvpvf 414 (525)
+-+..+++ .+|+|++-- ...+..++.+ ..++.|+.++
T Consensus 81 ~~~~~al~---aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 121 (336)
T 2p2s_A 81 ELALRTLD---AGKDFFTAKPPLTTLEQLDAVQRRVAETGRKFA 121 (336)
T ss_dssp HHHHHHHH---TTCEEEECSSCCSCHHHHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHH---CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 23333444 357766532 2223344433 3456787765
No 272
>2r3b_A YJEF-related protein; putative kinase in the ribokinase-like superfamily, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Enterococcus faecalis} PDB: 2r3e_A
Probab=25.16 E-value=39 Score=33.41 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=19.9
Q ss_pred CcEEEEec---chhHHHHHHHHHHHcCC
Q psy7785 302 GNIGCLVN---GAGLAMATMDIIKLHGG 326 (525)
Q Consensus 302 ~rIaIitn---sGG~gvlaaD~~~~~Gl 326 (525)
++|.+|.. +||+|+++.=.+-..|.
T Consensus 45 G~vlvIaGsd~~~GA~ilA~~aal~~Ga 72 (310)
T 2r3b_A 45 GRVVLIGGNRQYGGAIIMSTEACINSGA 72 (310)
T ss_dssp CEEEEECCCSSSHHHHHHHHHHHHHHTC
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHHhCc
Confidence 67888875 58999998877777775
No 273
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=25.16 E-value=3.2e+02 Score=24.95 Aligned_cols=76 Identities=12% Similarity=0.117 Sum_probs=45.2
Q ss_pred CcEEEEecchhHHHH------HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHH-HHhcCCCccEEEEEecccccChHHHH
Q psy7785 302 GNIGCLVNGAGLAMA------TMDIIKLHGGEPANFLDVGGGVNEESIIQAFR-IISSDSNVKCILVNVFGGIVNCATIA 374 (525)
Q Consensus 302 ~rIaIitnsGG~gvl------aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~-~ll~dp~vd~vlv~~~~~~~~~~~ia 374 (525)
+||++++...+.... ..+++.+.|++.. +. ..++.+.+.-+++++ .+...|.+|+|+.. .+.+|
T Consensus 124 ~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~-~~-~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~-------nD~~A 194 (271)
T 2dri_A 124 AKVIELQGIAGTSAARERGEGFQQAVAAHKFNVL-AS-QPADFDRIKGLNVMQNLLTAHPDVQAVFAQ-------NDEMA 194 (271)
T ss_dssp CEEEEEECCTTCHHHHHHHHHHHHHHHHHTCEEE-EE-EECTTCHHHHHHHHHHHHHHCTTCCEEEES-------SHHHH
T ss_pred CeEEEEECCCCCccHhHHHHHHHHHHhcCCCEEE-Ee-cCCCCCHHHHHHHHHHHHHhCCCccEEEEC-------CCcHH
Confidence 589999754332211 2367777776431 11 245556665444444 44456789988852 36778
Q ss_pred HHHHHHHHhcCC
Q psy7785 375 KGLVNACKSFKL 386 (525)
Q Consensus 375 ~~i~~a~~~~~~ 386 (525)
-++++++++.+.
T Consensus 195 ~g~~~al~~~g~ 206 (271)
T 2dri_A 195 LGALRALQTAGK 206 (271)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHcCC
Confidence 888888877544
No 274
>1zau_A DNA ligase; AMP; HET: DNA AMP; 3.15A {Mycobacterium tuberculosis}
Probab=24.80 E-value=57 Score=32.64 Aligned_cols=87 Identities=17% Similarity=0.177 Sum_probs=54.4
Q ss_pred hhCCCCccccCCHHHHHHHHHHhhccc--CCCCeE--E-Ee---CC---CCHHHHHHHHHHCCCCe----EEEcChhHHH
Q psy7785 407 DESKLPLIFASDLDEAASLVNACKSFK--LSIPLV--V-RL---EG---TNVQEGKRILDESKLPL----IFASDLDEAA 471 (525)
Q Consensus 407 ~~~Gvpvf~~~s~~~Av~Al~~l~~~~--~~~P~~--~-~l---~g---~~e~eak~LL~ayGIpv----~lA~s~deAv 471 (525)
.+.|-+.| .+|-.|+.-..+..+.. ...|+. + .+ .+ .+..+..+.|++.|+|+ .++.+.++..
T Consensus 200 ~~~g~~~f--aNPRNaAAGsLrqld~~ita~R~L~f~~y~i~~~~~~~~~t~~e~l~~L~~~Gf~v~~~~~~~~~~~ev~ 277 (328)
T 1zau_A 200 VEEGKAPF--ANPRNSAAGSLRQKDPAVTARRRLRMICHGLGHVEGFRPATLHQAYLALRAWGLPVSEHTTLATDLAGVR 277 (328)
T ss_dssp SSTTSCCC--SSHHHHHHHHHTCSSHHHHHHSCCBCCCCBCCCCSSCCCSBHHHHHHHHHTTTCCCCCCCCCBCHHHHHH
T ss_pred HHcCCccc--cChHHHHHHHHHccChhhhhcCcceEEEEeccccCCCCCCCHHHHHHHHHHcCCCCCCceEEeCCHHHHH
Confidence 35688889 88887665543321100 001111 0 00 11 36779999999999998 6888999988
Q ss_pred HHHHHhhhcC--CCCc---EEEEEecCCh
Q psy7785 472 SLVNACKSFK--LSIP---LVVRLEGTNV 495 (525)
Q Consensus 472 ~~~~aa~~~~--~G~P---VVlKi~~~~~ 495 (525)
+..+...+.+ ..|+ ||+|+.....
T Consensus 278 ~~~~~~~~~R~~l~y~iDGvViKvn~~~~ 306 (328)
T 1zau_A 278 ERIDYWGEHRHEVDHEIDGVVVKVDEVAL 306 (328)
T ss_dssp HHHHHTTTTCSSCSSCEEEEEEEECBHHH
T ss_pred HHHHHHHHHHhcCCCCCceEEEEecCHHH
Confidence 8766554433 4666 9999965433
No 275
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=24.33 E-value=2.6e+02 Score=22.04 Aligned_cols=116 Identities=9% Similarity=0.033 Sum_probs=65.5
Q ss_pred cEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHH
Q psy7785 303 NIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACK 382 (525)
Q Consensus 303 rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~ 382 (525)
+|.|+-..--..-.....++..|... +....+ ..++++.+.....+|.+++-+..+..+..++.+.+.+..
T Consensus 7 ~iLivdd~~~~~~~l~~~L~~~g~~~-----v~~~~~---~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~- 77 (129)
T 3h1g_A 7 KLLVVDDSSTMRRIIKNTLSRLGYED-----VLEAEH---GVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDS- 77 (129)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTCCC-----EEEESS---HHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTST-
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCcE-----EEEeCC---HHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-
Confidence 78999999888888999999887641 221112 335666666666788887754433344444444332211
Q ss_pred hcCCCCcEEEEeCCcchHHHHHHHhhCCCCcc-c-cCCHHHHHHHHHHh
Q psy7785 383 SFKLSIPLVVRLEGTNVQEGKRILDESKLPLI-F-ASDLDEAASLVNAC 429 (525)
Q Consensus 383 ~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf-~-~~s~~~Av~Al~~l 429 (525)
.....|+++...........+. .+.|+--| . +-++++-..++...
T Consensus 78 -~~~~~pii~~s~~~~~~~~~~~-~~~g~~~~l~KP~~~~~L~~~l~~~ 124 (129)
T 3h1g_A 78 -RFKEIPIIMITAEGGKAEVITA-LKAGVNNYIVKPFTPQVLKEKLEVV 124 (129)
T ss_dssp -TCTTCCEEEEESCCSHHHHHHH-HHHTCCEEEESCCCHHHHHHHHHHH
T ss_pred -CCCCCeEEEEeCCCChHHHHHH-HHcCccEEEeCCCCHHHHHHHHHHH
Confidence 1135788765544433333333 34565433 2 55666666665544
No 276
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=23.87 E-value=97 Score=30.22 Aligned_cols=100 Identities=14% Similarity=0.133 Sum_probs=50.3
Q ss_pred cEEEEecchhHHHHHHHHHHHcCC-CC-----CC------eeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccCh
Q psy7785 303 NIGCLVNGAGLAMATMDIIKLHGG-EP-----AN------FLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNC 370 (525)
Q Consensus 303 rIaIitnsGG~gvlaaD~~~~~Gl-~~-----aN------PlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~ 370 (525)
|||||..| ..|-..+..+...+. .. .| ..+-.|.. .....++.+++|+++|+|++..+..
T Consensus 7 rigiiG~G-~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~---~~~~~~~~ll~~~~~D~V~i~tp~~---- 78 (329)
T 3evn_A 7 RYGVVSTA-KVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLP---KAYDKLEDMLADESIDVIYVATINQ---- 78 (329)
T ss_dssp EEEEEBCC-TTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCS---CEESCHHHHHTCTTCCEEEECSCGG----
T ss_pred EEEEEech-HHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCC---cccCCHHHHhcCCCCCEEEECCCcH----
Confidence 79999885 355555566665542 11 01 11111110 1223456677899999988754432
Q ss_pred HHHHHHHHHHHHhcCCCCcEEEEeC-CcchHHHH---HHHhhCCCCcc
Q psy7785 371 ATIAKGLVNACKSFKLSIPLVVRLE-GTNVQEGK---RILDESKLPLI 414 (525)
Q Consensus 371 ~~ia~~i~~a~~~~~~~kPivv~~~-g~~~~~~~---~~L~~~Gvpvf 414 (525)
.-++-+..+++ .+|+|++--. ..+..++. +..++.|+.++
T Consensus 79 -~h~~~~~~al~---aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~ 122 (329)
T 3evn_A 79 -DHYKVAKAALL---AGKHVLVEKPFTLTYDQANELFALAESCNLFLM 122 (329)
T ss_dssp -GHHHHHHHHHH---TTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEE
T ss_pred -HHHHHHHHHHH---CCCeEEEccCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 11222233333 4677776432 22344443 34456788765
No 277
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=23.35 E-value=56 Score=32.19 Aligned_cols=103 Identities=9% Similarity=0.051 Sum_probs=50.6
Q ss_pred cEEEEecchhHHH-HHHHHHHHcC-CCCCCeeeecCCCCHHHHHHHHHHHhcC-CCccEEEEEecccccChHHHHHHHHH
Q psy7785 303 NIGCLVNGAGLAM-ATMDIIKLHG-GEPANFLDVGGGVNEESIIQAFRIISSD-SNVKCILVNVFGGIVNCATIAKGLVN 379 (525)
Q Consensus 303 rIaIitnsGG~gv-laaD~~~~~G-l~~aNPlDl~g~a~~~~~~~al~~ll~d-p~vd~vlv~~~~~~~~~~~ia~~i~~ 379 (525)
|||||..| ..|- ..+..+.... .+..--.|.......-+.+..++.++++ |++|+|+|..+ ...-++-+..
T Consensus 27 rvgiiG~G-~ig~~~~~~~l~~~~~~~lvav~d~~~~~~g~~~~~~~~~ll~~~~~vD~V~i~tp-----~~~H~~~~~~ 100 (330)
T 4ew6_A 27 NLAIVGVG-KIVRDQHLPSIAKNANFKLVATASRHGTVEGVNSYTTIEAMLDAEPSIDAVSLCMP-----PQYRYEAAYK 100 (330)
T ss_dssp EEEEECCS-HHHHHTHHHHHHHCTTEEEEEEECSSCCCTTSEEESSHHHHHHHCTTCCEEEECSC-----HHHHHHHHHH
T ss_pred eEEEEecC-HHHHHHHHHHHHhCCCeEEEEEEeCChhhcCCCccCCHHHHHhCCCCCCEEEEeCC-----cHHHHHHHHH
Confidence 89999874 4554 5666776653 2211111111110000112334556666 99999887533 2222333344
Q ss_pred HHHhcCCCCcEEEEe-CCcchHHHH---HHHhhCCCCcc
Q psy7785 380 ACKSFKLSIPLVVRL-EGTNVQEGK---RILDESKLPLI 414 (525)
Q Consensus 380 a~~~~~~~kPivv~~-~g~~~~~~~---~~L~~~Gvpvf 414 (525)
+++ .+|+|++-- ...+..++. +..++.|+.++
T Consensus 101 al~---aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 136 (330)
T 4ew6_A 101 ALV---AGKHVFLEKPPGATLSEVADLEALANKQGASLF 136 (330)
T ss_dssp HHH---TTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred HHH---cCCcEEEeCCCCCCHHHHHHHHHHHHhcCCeEE
Confidence 444 467777532 222344443 34456788765
No 278
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=23.06 E-value=4.9e+02 Score=24.73 Aligned_cols=102 Identities=15% Similarity=0.120 Sum_probs=57.1
Q ss_pred CcEEEEecchhHHH------HHHHHHHHcCCCCCCeee-ecCCCCHHH-HHHHHHHHhcCCCccEEEEEecccccChHHH
Q psy7785 302 GNIGCLVNGAGLAM------ATMDIIKLHGGEPANFLD-VGGGVNEES-IIQAFRIISSDSNVKCILVNVFGGIVNCATI 373 (525)
Q Consensus 302 ~rIaIitnsGG~gv------laaD~~~~~Gl~~aNPlD-l~g~a~~~~-~~~al~~ll~dp~vd~vlv~~~~~~~~~~~i 373 (525)
++|++++..-+... -..+++.++|. . .... ..++.+.+. +..+.+.|.+.|++|+|+.. .+.+
T Consensus 146 ~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~aI~~~-------~d~~ 216 (350)
T 3h75_A 146 IELLAFSGLKVTPAAQLRERGLRRALAEHPQ-V-HLRQLVYGEWNRERAYRQAQQLLKRYPKTQLVWSA-------NDEM 216 (350)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHCTT-E-EEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEES-------SHHH
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHHCCC-e-EEEEEeeCCCcHHHHHHHHHHHHHhCCCcCEEEEC-------ChHH
Confidence 47888875533221 12366777665 1 2222 356666665 45555556667899988742 3567
Q ss_pred HHHHHHHHHhcCCCCc--E-EEEeCCcchHHHHHHHhhCCCCcc
Q psy7785 374 AKGLVNACKSFKLSIP--L-VVRLEGTNVQEGKRILDESKLPLI 414 (525)
Q Consensus 374 a~~i~~a~~~~~~~kP--i-vv~~~g~~~~~~~~~L~~~Gvpvf 414 (525)
|.++++++++.+...| | ++.+.+. ..+.+.+.+..+-..
T Consensus 217 a~g~~~al~~~G~~vP~di~vvg~d~~--~~~l~~~~~~~lttv 258 (350)
T 3h75_A 217 ALGAMQAARELGRKPGTDLLFSGVNSS--PEALQALIDGKLSVL 258 (350)
T ss_dssp HHHHHHHHHHTTCCBTTTBEEEEESCC--HHHHHHHHHTSSCEE
T ss_pred HHHHHHHHHHcCCCCCCCeEEEecCCC--HHHHHHHHcCCeeEE
Confidence 7788888887543322 3 3344433 444455555555433
No 279
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=22.84 E-value=1.9e+02 Score=27.45 Aligned_cols=32 Identities=13% Similarity=0.271 Sum_probs=26.6
Q ss_pred ceeccCCcEEEEecc-hhHHHHHHHHHHHcCCC
Q psy7785 296 NYVGMDGNIGCLVNG-AGLAMATMDIIKLHGGE 327 (525)
Q Consensus 296 ~~~~~~~rIaIitns-GG~gvlaaD~~~~~Gl~ 327 (525)
+|..|.+++++||-+ +|.|-.++-.+.+.|..
T Consensus 1 Sy~sL~gKvalVTGas~GIG~aiA~~la~~Ga~ 33 (254)
T 4fn4_A 1 SYQSLKNKVVIVTGAGSGIGRAIAKKFALNDSI 33 (254)
T ss_dssp CCGGGTTCEEEEETTTSHHHHHHHHHHHHTTCE
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCE
Confidence 466788999999865 68899999999999974
No 280
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=22.75 E-value=2.6e+02 Score=26.28 Aligned_cols=61 Identities=8% Similarity=0.090 Sum_probs=37.3
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCCC---------CCeeeecCCCC--HHHHHHHHHHHhcCCCccEEEE
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGGEP---------ANFLDVGGGVN--EESIIQAFRIISSDSNVKCILV 361 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~~---------aNPlDl~g~a~--~~~~~~al~~ll~dp~vd~vlv 361 (525)
++||||++..+-..-..-+.+.++|... ...+++.++.. .+.+.+....++++.++|.|++
T Consensus 109 ~~rigVlaT~~t~~~~~~~~l~~~g~~~~~~~v~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~gad~IVL 180 (245)
T 3qvl_A 109 ATRFSIVTTLPRTLIIARHLLHQYGFHQHCAALHAIDLPVLALEDGSGLAQEKVRERCIRALKEDGSGAIVL 180 (245)
T ss_dssp CSCEEEEESCGGGHHHHHHHHHHHTCGGGEEEEEECCSCGGGGGSSSSHHHHHHHHHHHHHHHHSCCSEEEE
T ss_pred CCEEEEEEcchhHHHHHHHHHHHcCCCCeEEEEeCCCCCHHHHcCCcHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 5799999999987767788888888742 12234433321 1224444444444456787775
No 281
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=22.52 E-value=2.4e+02 Score=25.99 Aligned_cols=76 Identities=18% Similarity=0.180 Sum_probs=43.2
Q ss_pred CcEEEEecchhHHHH------HHHHHHHc-CCCCCCeeeecCCCCHHHH-HHHHHHHhcCCCccEEEEEecccccChHHH
Q psy7785 302 GNIGCLVNGAGLAMA------TMDIIKLH-GGEPANFLDVGGGVNEESI-IQAFRIISSDSNVKCILVNVFGGIVNCATI 373 (525)
Q Consensus 302 ~rIaIitnsGG~gvl------aaD~~~~~-Gl~~aNPlDl~g~a~~~~~-~~al~~ll~dp~vd~vlv~~~~~~~~~~~i 373 (525)
++|++++..-+.... ..+++.++ |++... ...++.+.+.- ..+.+.+.+.|++|+|+.. .+.+
T Consensus 136 ~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~ 206 (293)
T 3l6u_A 136 GRIVEITGTANVYTTNERHRGFLKGIENEPTLSIVD--SVSGNYDPVTSERVMRQVIDSGIPFDAVYCH-------NDDI 206 (293)
T ss_dssp EEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEEEE--EEECTTCHHHHHHHHHHHHHTTCCCSEEEES-------SHHH
T ss_pred ceEEEEECCCCCchHHHHHHHHHHHHHhCCCcEEee--eccCCCCHHHHHHHHHHHHHhCCCCCEEEEC-------CchH
Confidence 389999854332211 12455555 443211 13455566654 4444455556899998852 3566
Q ss_pred HHHHHHHHHhcCC
Q psy7785 374 AKGLVNACKSFKL 386 (525)
Q Consensus 374 a~~i~~a~~~~~~ 386 (525)
|-++.+++++.+.
T Consensus 207 a~g~~~al~~~g~ 219 (293)
T 3l6u_A 207 AMGVLEALKKAKI 219 (293)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCC
Confidence 7788888887543
No 282
>3bgk_A SMU.573, putative uncharacterized protein; alpha/beta three layer sandwich, unknown function; 2.50A {Streptococcus mutans}
Probab=22.49 E-value=44 Score=33.05 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=19.9
Q ss_pred CcEEEEec---chhHHHHHHHHHHHcCC
Q psy7785 302 GNIGCLVN---GAGLAMATMDIIKLHGG 326 (525)
Q Consensus 302 ~rIaIitn---sGG~gvlaaD~~~~~Gl 326 (525)
++|.+|.- +||+|+++.=.+-..|.
T Consensus 59 G~vlvIaGsd~~~GAgilA~~aal~~Ga 86 (311)
T 3bgk_A 59 GRVLLIGGNYPYGGAIIMAALACVNSGA 86 (311)
T ss_dssp CEEEEECCCTTCHHHHHHHHHHHHHTTC
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHhCc
Confidence 67888885 68999998877777775
No 283
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*
Probab=22.48 E-value=1.8e+02 Score=32.25 Aligned_cols=81 Identities=19% Similarity=0.288 Sum_probs=49.5
Q ss_pred cCCceeccCCcEEEEecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHH---HHHHHHHHHhcCCCccEEEEEe----c-
Q psy7785 293 YNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEE---SIIQAFRIISSDSNVKCILVNV----F- 364 (525)
Q Consensus 293 ~~l~~~~~~~rIaIitnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~---~~~~al~~ll~dp~vd~vlv~~----~- 364 (525)
++..|.++.++|++||- .|| .+ ...+.+ .+.++++.+.+|+++.+|++.. |
T Consensus 20 ~m~~~~~~~~~Va~itl-------------------nrP-~~-Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~ 78 (742)
T 3zwc_A 20 HMAEYLRLPHSLAMIRL-------------------CNP-PV-NAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFC 78 (742)
T ss_dssp TTEEEEECSTTEEEEEE-------------------CCT-TT-TCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSB
T ss_pred CceeEEEeeCCEEEEEe-------------------CCC-cc-cCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCccc
Confidence 34556778889999995 444 32 222333 4788999999999999988842 1
Q ss_pred ccc--c-----ChHHHHHHHHHHHHhcCCCCcEEEEeCC
Q psy7785 365 GGI--V-----NCATIAKGLVNACKSFKLSIPLVVRLEG 396 (525)
Q Consensus 365 ~~~--~-----~~~~ia~~i~~a~~~~~~~kPivv~~~g 396 (525)
.|. . ....-...+.+.... .+||+++...|
T Consensus 79 aGaDl~~~~~~~~~~~~~~~~~~i~~--~~kPvIAai~G 115 (742)
T 3zwc_A 79 AGADIHGFSAFTPGLALGSLVDEIQR--YQKPVLAAIQG 115 (742)
T ss_dssp CCBCSSSCCSSCSCSHHHHHHHHHHH--CSSCEEEEECS
T ss_pred cCcChHhhhccChhHHHHHHHHHHHh--CCCCEEEEECc
Confidence 111 0 011112344555555 78999975544
No 284
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=22.42 E-value=1.1e+02 Score=30.00 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=34.8
Q ss_pred HHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEe-CCcchHHHHHH------HhhCCCCcc
Q psy7785 347 FRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRL-EGTNVQEGKRI------LDESKLPLI 414 (525)
Q Consensus 347 l~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~-~g~~~~~~~~~------L~~~Gvpvf 414 (525)
++.|++|+++|+|+|..+.. .-++-...+++ .+|+|++=- +..+..++.++ -++.|+.++
T Consensus 67 ~~~ll~~~~iDaV~I~tP~~-----~H~~~~~~al~---aGkhVl~EKPla~t~~ea~~l~~~~~~~~~~g~~~~ 133 (390)
T 4h3v_A 67 WRTLLERDDVQLVDVCTPGD-----SHAEIAIAALE---AGKHVLCEKPLANTVAEAEAMAAAAAKAAAGGIRSM 133 (390)
T ss_dssp HHHHTTCTTCSEEEECSCGG-----GHHHHHHHHHH---TTCEEEEESSSCSSHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHhcCCCCCEEEEeCChH-----HHHHHHHHHHH---cCCCceeecCcccchhHHHHHHHHHHHHHhcCCceE
Confidence 67789999999999854432 11223333444 467777642 33345555444 234687654
No 285
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=21.99 E-value=4.1e+02 Score=23.47 Aligned_cols=119 Identities=14% Similarity=0.168 Sum_probs=67.0
Q ss_pred CcEEEEecc------hhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEe--c-cccc----
Q psy7785 302 GNIGCLVNG------AGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNV--F-GGIV---- 368 (525)
Q Consensus 302 ~rIaIitns------GG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~--~-~~~~---- 368 (525)
-|||||... ..+---+.|.+.++|.+--.-+.+-|.. .+.-+.+.|.+ ++|+++..- . ++..
T Consensus 18 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~~~i~v~~VPGaf---EiP~aak~la~--~yDavIaLG~VIrG~T~Hfd~ 92 (160)
T 2c92_A 18 VRLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLGAI---EIPVVAQELAR--NHDAVVALGVVIRGQTPHFDY 92 (160)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHHHHTTCSCCEEEEESSGG---GHHHHHHHHHT--SCSEEEEEEEEECCSSTHHHH
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCceEEEECCcHH---HHHHHHHHHHh--cCCEEEEEeeeecCCchHHHH
Confidence 478887643 2455557799999997611112233332 23345566665 499999742 2 3332
Q ss_pred ChHHHHHHHHHHHHhcCCCCcEEEEeCC-cchHHHHHHHhhCCCC-ccccCCHHHHHHHHHHhhc
Q psy7785 369 NCATIAKGLVNACKSFKLSIPLVVRLEG-TNVQEGKRILDESKLP-LIFASDLDEAASLVNACKS 431 (525)
Q Consensus 369 ~~~~ia~~i~~a~~~~~~~kPivv~~~g-~~~~~~~~~L~~~Gvp-vf~~~s~~~Av~Al~~l~~ 431 (525)
.|..++++|.++.-+ +++||...... .+.+++. .+.|.+ -+ .+--.+|+.++..+..
T Consensus 93 Va~~vs~Gl~~v~L~--~~vPV~~GVLT~~~~eQA~---~Rag~~~~~-~nKG~eaA~aalem~~ 151 (160)
T 2c92_A 93 VCDAVTQGLTRVSLD--SSTPIANGVLTTNTEEQAL---DRAGLPTSA-EDKGAQATVAALATAL 151 (160)
T ss_dssp HHHHHHHHHHHHHHH--HTCCEEEEEEEESSHHHHH---TTBTCTTCS-CBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh--cCCCEEEEEcCCCCHHHHH---HHhcccccc-chhHHHHHHHHHHHHH
Confidence 345667788877666 68999865333 3344443 344553 22 1335566666666543
No 286
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=21.47 E-value=3.4e+02 Score=24.92 Aligned_cols=77 Identities=16% Similarity=0.086 Sum_probs=44.7
Q ss_pred CcEEEEecchhHHH------HHHHHHHHcCCCCCCeeee--cCCC----CHHHHHHHHHHHhcCCCccEEEEEecccccC
Q psy7785 302 GNIGCLVNGAGLAM------ATMDIIKLHGGEPANFLDV--GGGV----NEESIIQAFRIISSDSNVKCILVNVFGGIVN 369 (525)
Q Consensus 302 ~rIaIitnsGG~gv------laaD~~~~~Gl~~aNPlDl--~g~a----~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~ 369 (525)
++|++++...+... -..+++.++|++...-.=. .++. +.+.-.+.++.+++. ++|+|+..
T Consensus 123 ~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~ai~~~------- 194 (288)
T 2qu7_A 123 KEVGLLLANPNISTTIGRKNGYNKAISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSK-GIKGIVAT------- 194 (288)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSCSHHHHHHHHHHHHHHHHHT-TCCEEEEC-------
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCCCcceEEeccCCccccCCHHHHHHHHHHHHhc-CCCEEEEC-------
Confidence 58999986533211 1236777888764321112 3444 444445556666665 78888852
Q ss_pred hHHHHHHHHHHHHhcCC
Q psy7785 370 CATIAKGLVNACKSFKL 386 (525)
Q Consensus 370 ~~~ia~~i~~a~~~~~~ 386 (525)
.+.+|.++++++++.+.
T Consensus 195 ~d~~a~g~~~al~~~g~ 211 (288)
T 2qu7_A 195 NHLLLLGALQAIKESEK 211 (288)
T ss_dssp SHHHHHHHHHHHHHSSC
T ss_pred CcHHHHHHHHHHHHhCC
Confidence 25667788888877543
No 287
>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
Probab=21.44 E-value=2e+02 Score=28.52 Aligned_cols=96 Identities=13% Similarity=0.069 Sum_probs=53.2
Q ss_pred HHHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEe---CCcchHHHHHHHhhCCCCccccCCHHHH
Q psy7785 346 AFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRL---EGTNVQEGKRILDESKLPLIFASDLDEA 422 (525)
Q Consensus 346 al~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~---~g~~~~~~~~~L~~~Gvpvf~~~s~~~A 422 (525)
.++.+++ .++++|++-.+|...-+..+.+.|.++.+ .+.|||.+. .|.-...+. .|.+.|+-.-..-+|+.|
T Consensus 234 ~l~~~~~-~g~~GiVle~~G~Gn~p~~~~~~l~~a~~---~Gi~VV~~Sr~~~G~v~~~g~-~l~~~Gvi~~~dlt~ekA 308 (332)
T 2wlt_A 234 LFQASLN-SHAKGVVIAGVGNGNVSAGFLKAMQEASQ---MGVVIVRSSRVGSGGVTSGEI-DDKAYGFITSDNLNPQKA 308 (332)
T ss_dssp HHHHHHH-TTCSEEEEEEBTTTBCCHHHHHHHHHHHH---TTCEEEEEESSSSSCCCSSSS-CHHHHTCEECTTCCHHHH
T ss_pred HHHHHHh-CCCCEEEEeeECCCCCCHHHHHHHHHHHH---CCCEEEEECCCCCCCcCcchh-hhhcCCEEECCCCCHHHH
Confidence 3444444 35999998766554334667777777655 378988653 232111122 566667633213578888
Q ss_pred HHHHHHhhcccCCCCeEEEeCCCCHHHHHHHHHHC
Q psy7785 423 ASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDES 457 (525)
Q Consensus 423 v~Al~~l~~~~~~~P~~~~l~g~~e~eak~LL~ay 457 (525)
...|+-.... +.+.++-++++..|
T Consensus 309 r~kL~~~L~~-----------~~~~~~i~~~f~~~ 332 (332)
T 2wlt_A 309 RVLLQLALTK-----------TNDKAKIQEMFEEY 332 (332)
T ss_dssp HHHHHHHHHH-----------CCCHHHHHHHHHHC
T ss_pred HHHHHHHHhC-----------CCCHHHHHHHHhhC
Confidence 7666533211 23455666666543
No 288
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=21.39 E-value=5.4e+02 Score=24.52 Aligned_cols=96 Identities=18% Similarity=0.235 Sum_probs=55.6
Q ss_pred CeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccc---cChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHH--
Q psy7785 330 NFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGI---VNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKR-- 404 (525)
Q Consensus 330 NPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~---~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~-- 404 (525)
-|.| -|..+.+.+.+.++.+.+ .++|+++++-..|. ...++-. .+++...+. .+. |++..++++..++.+
T Consensus 9 TPf~-dg~iD~~~l~~lv~~li~-~Gv~gl~v~GttGE~~~Ls~~Er~-~v~~~~~~~-~~g-vi~Gvg~~~t~~ai~la 83 (286)
T 2r91_A 9 TTFR-GGRLDPELFANHVKNITS-KGVDVVFVAGTTGLGPALSLQEKM-ELTDAATSA-ARR-VIVQVASLNADEAIALA 83 (286)
T ss_dssp CCEE-TTEECHHHHHHHHHHHHH-TTCCEEEETSTTTTGGGSCHHHHH-HHHHHHHHH-CSS-EEEECCCSSHHHHHHHH
T ss_pred cCcC-CCccCHHHHHHHHHHHHH-CCCCEEEECccccChhhCCHHHHH-HHHHHHHHH-hCC-EEEeeCCCCHHHHHHHH
Confidence 4777 788898989999999887 48999998644442 1222222 333333321 223 665555545555543
Q ss_pred -HHhhCCC-------Ccccc-CCHHHHHHHHHHhh
Q psy7785 405 -ILDESKL-------PLIFA-SDLDEAASLVNACK 430 (525)
Q Consensus 405 -~L~~~Gv-------pvf~~-~s~~~Av~Al~~l~ 430 (525)
...+.|. |.|.. .+.+..++.+.+..
T Consensus 84 ~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va 118 (286)
T 2r91_A 84 KYAESRGAEAVASLPPYYFPRLSERQIAKYFRDLC 118 (286)
T ss_dssp HHHHHTTCSEEEECCSCSSTTCCHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHH
Confidence 3445665 55544 56666555555544
No 289
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=21.35 E-value=1.5e+02 Score=26.22 Aligned_cols=59 Identities=14% Similarity=0.086 Sum_probs=38.1
Q ss_pred CcEEEEecch-------hHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEE
Q psy7785 302 GNIGCLVNGA-------GLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVN 362 (525)
Q Consensus 302 ~rIaIitnsG-------G~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~ 362 (525)
-|++|||.|= .-+-+.+..+.+.|..+... .+.++ +.+.+.++++..+++.+.|.|++.
T Consensus 11 ~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~-~iv~D-d~~~i~~~l~~a~~~~~~DlVitt 76 (172)
T 1mkz_A 11 TRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDK-AIVKE-NRYAIRAQVSAWIASDDVQVVLIT 76 (172)
T ss_dssp CEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEE-EEECS-CHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred CEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEE-EEeCC-CHHHHHHHHHHHHhcCCCCEEEeC
Confidence 3788887652 23456778888888764332 22333 356688888888876678877653
No 290
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=21.30 E-value=1.7e+02 Score=28.16 Aligned_cols=65 Identities=9% Similarity=0.314 Sum_probs=41.8
Q ss_pred ccCCcEEEEecc-hhHHHHHHHHHHHcCCCC------------------CCeeeecCCCCH-HHHHHHHHHHhcC-CCcc
Q psy7785 299 GMDGNIGCLVNG-AGLAMATMDIIKLHGGEP------------------ANFLDVGGGVNE-ESIIQAFRIISSD-SNVK 357 (525)
Q Consensus 299 ~~~~rIaIitns-GG~gvlaaD~~~~~Gl~~------------------aNPlDl~g~a~~-~~~~~al~~ll~d-p~vd 357 (525)
++.+++++||-+ +|.|-.++-.+.+.|..+ .+-+-+..+.+. +...++++.+.+. ..+|
T Consensus 26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD 105 (273)
T 4fgs_A 26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRID 105 (273)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCEE
T ss_pred hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 467899999875 689999999999999631 233333344433 3455555555443 5688
Q ss_pred EEEEEe
Q psy7785 358 CILVNV 363 (525)
Q Consensus 358 ~vlv~~ 363 (525)
.++-|.
T Consensus 106 iLVNNA 111 (273)
T 4fgs_A 106 VLFVNA 111 (273)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 666543
No 291
>1wsa_A Asparaginase, asparagine amidohydrolase; periplasmic; 2.20A {Wolinella succinogenes} SCOP: c.88.1.1
Probab=21.30 E-value=1.7e+02 Score=29.02 Aligned_cols=78 Identities=14% Similarity=0.049 Sum_probs=43.8
Q ss_pred HHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEe---CCcchHHHHHHHhhCCCCccccCCHHHHH
Q psy7785 347 FRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRL---EGTNVQEGKRILDESKLPLIFASDLDEAA 423 (525)
Q Consensus 347 l~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~---~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av 423 (525)
++.+++ .++++|++-.++...-+..+.+.|.++.+ .+.|||.+. .|.-....-..|.+.|+-.-..-+|+.|.
T Consensus 232 l~~~~~-~g~~GiVle~~G~Gn~p~~~~~~l~~a~~---~gi~VV~~Sr~~~G~v~~~~g~~l~~~Gvi~~~dlt~ekAr 307 (330)
T 1wsa_A 232 VNAALQ-AGAKGIIHAGMGNGNPFPLTQNALEKAAK---SGVVVARSSRVGSGSTTQEAEVDDKKLGFVATESLNPQKAR 307 (330)
T ss_dssp HHHHHH-TTCSEEEEEEBTTTBCCHHHHHHHHHHHH---TTCEEEEEESSSSSCBCSSSSSCHHHHTEEECBSCCHHHHH
T ss_pred HHHHHh-CCCCEEEEeeECCCCCCHHHHHHHHHHHH---CCCEEEEECCCCCCCcCcchhhHHhcCCEEECCCCCHHHHH
Confidence 333443 35999998766554333566777777655 478988653 23211112234556666322135788887
Q ss_pred HHHHH
Q psy7785 424 SLVNA 428 (525)
Q Consensus 424 ~Al~~ 428 (525)
..|+-
T Consensus 308 ~kL~~ 312 (330)
T 1wsa_A 308 VLLML 312 (330)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66653
No 292
>2pbz_A Hypothetical protein; NYSGXRC, PSI-II, IMP biosynthesis, ATP binding protein, PURP structural genomics, protein structure initiative; HET: ATP; 2.50A {Thermococcus kodakarensis} SCOP: c.30.1.8 d.142.1.9
Probab=21.29 E-value=23 Score=35.37 Aligned_cols=44 Identities=20% Similarity=0.299 Sum_probs=23.1
Q ss_pred HHHHHHHHCCCCe-EEEcChhHHHHHHHHhhhcCCCCcEEEEEecCChHHHHHhhh
Q psy7785 449 EGKRILDESKLPL-IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILD 503 (525)
Q Consensus 449 eak~LL~ayGIpv-~lA~s~deAv~~~~aa~~~~~G~PVVlKi~~~~~~~~~~~~~ 503 (525)
.-+++|++.|||+ .... .+++ + +||||++|-....-.+|-.+++
T Consensus 101 ~~~~~l~~~Gip~P~~~~-~ee~--------~--i~~PviVKp~~g~ggkG~~~v~ 145 (320)
T 2pbz_A 101 LQDKALEGAGIPRVEVVE-PEDA--------K--PDELYFVRIEGPRGGSGHFIVE 145 (320)
T ss_dssp HHHHHHHHHTCCBCCBCC-SCCC--------C--SSCCEEEECC------------
T ss_pred HHHHHHHHCCcCCCCeeC-HhHc--------C--cCCcEEEEECCCCCCCCEEEEC
Confidence 3457999999999 3332 4432 3 3999999998877666666664
No 293
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=21.20 E-value=1.2e+02 Score=28.55 Aligned_cols=81 Identities=20% Similarity=0.153 Sum_probs=47.2
Q ss_pred CcEEEEecchhHHHH------HHHHHHHcCCCCCCeeeecC---CCCHHH-H--HHHHHHHhcCCCccEEEEEecccccC
Q psy7785 302 GNIGCLVNGAGLAMA------TMDIIKLHGGEPANFLDVGG---GVNEES-I--IQAFRIISSDSNVKCILVNVFGGIVN 369 (525)
Q Consensus 302 ~rIaIitnsGG~gvl------aaD~~~~~Gl~~aNPlDl~g---~a~~~~-~--~~al~~ll~dp~vd~vlv~~~~~~~~ 369 (525)
+||++++...+.... ..+++.++|+......-..+ +.+.+. + ..+.+.+...|.+|+|+..
T Consensus 132 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~------- 204 (301)
T 3miz_A 132 RRIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEMLKQDDRPTAIMSG------- 204 (301)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHHHTSTTCCSEEEES-------
T ss_pred CeEEEEecCccchhHHHHHHHHHHHHHHcCCCCCcceEEEcCCCCcCccccHHHHHHHHHHcCCCCCcEEEEC-------
Confidence 489999865443211 23677888876433222233 333332 3 3444445556889998852
Q ss_pred hHHHHHHHHHHHHhcCCCCc
Q psy7785 370 CATIAKGLVNACKSFKLSIP 389 (525)
Q Consensus 370 ~~~ia~~i~~a~~~~~~~kP 389 (525)
.+.+|-++.+++++.+...|
T Consensus 205 ~d~~A~g~~~al~~~g~~vP 224 (301)
T 3miz_A 205 NDEMAIQIYIAAMALGLRIP 224 (301)
T ss_dssp SHHHHHHHHHHHHTTTCCHH
T ss_pred CHHHHHHHHHHHHHcCCCCC
Confidence 35678888888887544433
No 294
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A*
Probab=21.06 E-value=4.7e+02 Score=26.43 Aligned_cols=37 Identities=5% Similarity=-0.130 Sum_probs=23.4
Q ss_pred CCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEE
Q psy7785 354 SNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVV 392 (525)
Q Consensus 354 p~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv 392 (525)
.+.|++||....|.....-.+..+++.+++ ...|++.
T Consensus 110 ~~~d~vfi~ag~GGGTGtGa~pvia~~~ke--~~~~~~~ 146 (389)
T 4ei7_A 110 EDRDFIWITCGLGGGTGTGALLKAIEMLYE--HDYNFGL 146 (389)
T ss_dssp TTCSEEEEEEETTSSHHHHHHHHHHHHHHH--TTCCEEE
T ss_pred CCccEEEEEecCCCCCccccHHHHHHHHHH--cCCCEEE
Confidence 468999986554432234555667777777 5667654
No 295
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=21.04 E-value=1.9e+02 Score=26.75 Aligned_cols=75 Identities=9% Similarity=-0.049 Sum_probs=43.5
Q ss_pred CcEEEEecchhHHHH------HHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHH
Q psy7785 302 GNIGCLVNGAGLAMA------TMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAK 375 (525)
Q Consensus 302 ~rIaIitnsGG~gvl------aaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~ 375 (525)
+||++++...+.... ..+++.++|++.... -..++.+ +..+.+.+.+.|.+|+|+.. .+.+|-
T Consensus 123 ~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~-~~~~~~~---~~~~~~~l~~~~~~~ai~~~-------~d~~A~ 191 (277)
T 3hs3_A 123 EKVLIQHWPLSLPTIRERIEAMTAEASKLKIDYLLE-ETPENNP---YISAQSALNKSNQFDAIITV-------NDLYAA 191 (277)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEE-ECCSSCH---HHHHHHHHHTGGGCSEEECS-------SHHHHH
T ss_pred CEEEEEeCCCcCccHHHHHHHHHHHHHHCCCCCCCC-CccCCch---HHHHHHHHcCCCCCCEEEEC-------CHHHHH
Confidence 589999866433211 236777777653221 1223322 44444444455889988841 366778
Q ss_pred HHHHHHHhcCCC
Q psy7785 376 GLVNACKSFKLS 387 (525)
Q Consensus 376 ~i~~a~~~~~~~ 387 (525)
++.+++++.+..
T Consensus 192 g~~~al~~~g~~ 203 (277)
T 3hs3_A 192 EIIKEAKRRNLK 203 (277)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 888888875543
No 296
>1nns_A L-asparaginase II; amidrohydrolase, crystallographic comparison hydrolase; 1.95A {Escherichia coli} SCOP: c.88.1.1 PDB: 3eca_A 1ho3_A 1jaz_A 1ihd_A 1jja_A 4eca_A*
Probab=20.78 E-value=1.8e+02 Score=28.88 Aligned_cols=79 Identities=13% Similarity=0.055 Sum_probs=44.2
Q ss_pred HHHHhcCCCccEEEEEecccccChHHHHHHHHHHHHhcCCCCcEEEEe---CCcchHHHHHHHhhCCCCccccCCHHHHH
Q psy7785 347 FRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRL---EGTNVQEGKRILDESKLPLIFASDLDEAA 423 (525)
Q Consensus 347 l~~ll~dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~~~kPivv~~---~g~~~~~~~~~L~~~Gvpvf~~~s~~~Av 423 (525)
++.+++ .+++++++-.++...-+..+.+.|.++.+ .+.|||.+. .|.-....-..|.+.|+-.-..-+|+.|.
T Consensus 228 l~~~~~-~g~~GiVl~~~G~Gn~p~~~~~~l~~a~~---~gi~VV~~Sr~~~G~v~~~~g~~l~~~Gvi~~~dlt~ekAr 303 (326)
T 1nns_A 228 AKALVD-AGYDGIVSAGVGNGNLYKSVFDTLATAAK---TGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKAR 303 (326)
T ss_dssp HHHHHH-TTCSEEEEEEBTTTBCCHHHHHHHHHHHH---TTCEEEEEESSSSSCBCSSSSSCHHHHTEEECBTCCHHHHH
T ss_pred HHHHHh-CCCCEEEEeeECCCCCCHHHHHHHHHHHH---CCCEEEEECCCCCCCcCCChhhHHhcCCEEECCCCCHHHHH
Confidence 333443 35999999766654334666777777655 378988653 23211112234555666322135788877
Q ss_pred HHHHHh
Q psy7785 424 SLVNAC 429 (525)
Q Consensus 424 ~Al~~l 429 (525)
..|+-.
T Consensus 304 ~kL~~~ 309 (326)
T 1nns_A 304 VLLQLA 309 (326)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776543
No 297
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=20.68 E-value=3.2e+02 Score=25.31 Aligned_cols=90 Identities=11% Similarity=0.072 Sum_probs=48.4
Q ss_pred ccCCcEEEEecch---hHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEecccccChHHHHH
Q psy7785 299 GMDGNIGCLVNGA---GLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAK 375 (525)
Q Consensus 299 ~~~~rIaIitnsG---G~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia~ 375 (525)
++.+++++||-++ |.|-..+-.+.+.|.++ =+++ -+.+...++.+.+.+-.+.++..+. .-..+.+.+.+
T Consensus 3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~V----vi~~-r~~~~~~~~~~~~~~~~~~~~~~~~--~Dv~~~~~v~~ 75 (256)
T 4fs3_A 3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKL----VFTY-RKERSRKELEKLLEQLNQPEAHLYQ--IDVQSDEEVIN 75 (256)
T ss_dssp CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEE----EEEE-SSGGGHHHHHHHHGGGTCSSCEEEE--CCTTCHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEE----EEEE-CCHHHHHHHHHHHHhcCCCcEEEEE--ccCCCHHHHHH
Confidence 4678999999843 89999999999999753 1221 1223344444444443433433332 12234444444
Q ss_pred HHHHHHHhcCCCCcEEEEeCC
Q psy7785 376 GLVNACKSFKLSIPLVVRLEG 396 (525)
Q Consensus 376 ~i~~a~~~~~~~kPivv~~~g 396 (525)
.+.++.+++ .+.-+++...|
T Consensus 76 ~~~~~~~~~-G~iD~lvnnAg 95 (256)
T 4fs3_A 76 GFEQIGKDV-GNIDGVYHSIA 95 (256)
T ss_dssp HHHHHHHHH-CCCSEEEECCC
T ss_pred HHHHHHHHh-CCCCEEEeccc
Confidence 444444442 23345554433
No 298
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=20.67 E-value=3.6e+02 Score=22.24 Aligned_cols=107 Identities=9% Similarity=0.039 Sum_probs=58.4
Q ss_pred cCCcEEEEecchhHHHHHHHHHHHcCCCC----C-----------CeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEec
Q psy7785 300 MDGNIGCLVNGAGLAMATMDIIKLHGGEP----A-----------NFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVF 364 (525)
Q Consensus 300 ~~~rIaIitnsGG~gvlaaD~~~~~Gl~~----a-----------NPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~~ 364 (525)
+.++|.|+.. |-.|...+..+...|..+ . +.--+.|+++.... ++.. .-.+.|.+++...
T Consensus 6 ~~~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~---l~~a-~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 6 ICNHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEI---MQLA-HLECAKWLILTIP 80 (140)
T ss_dssp CCSCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHH---HHHT-TGGGCSEEEECCS
T ss_pred CCCCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHH---HHhc-CcccCCEEEEECC
Confidence 4567877764 779999999999998741 1 11124466554432 1111 1135676665322
Q ss_pred ccccChHHHHHHHHHHHHhcCCCCcEEEEeCCcchHHHHHHHhhCCCCccccCCHHH
Q psy7785 365 GGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDE 421 (525)
Q Consensus 365 ~~~~~~~~ia~~i~~a~~~~~~~kPivv~~~g~~~~~~~~~L~~~Gvpvf~~~s~~~ 421 (525)
. +.....++..++..+...+++++.... +..+.|++.|+-.. -+|++
T Consensus 81 ~-----~~~n~~~~~~a~~~~~~~~iiar~~~~---~~~~~l~~~G~d~v--i~p~~ 127 (140)
T 3fwz_A 81 N-----GYEAGEIVASARAKNPDIEIIARAHYD---DEVAYITERGANQV--VMGER 127 (140)
T ss_dssp C-----HHHHHHHHHHHHHHCSSSEEEEEESSH---HHHHHHHHTTCSEE--EEHHH
T ss_pred C-----hHHHHHHHHHHHHHCCCCeEEEEECCH---HHHHHHHHCCCCEE--ECchH
Confidence 1 122222333444443456777766443 44568888999754 34443
No 299
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=20.51 E-value=1.1e+02 Score=33.78 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHCCCCe----EEEcChhHHHHHHHHhhhcC--CCCc---EEEEEecCChHH
Q psy7785 445 TNVQEGKRILDESKLPL----IFASDLDEAASLVNACKSFK--LSIP---LVVRLEGTNVQE 497 (525)
Q Consensus 445 ~~e~eak~LL~ayGIpv----~lA~s~deAv~~~~aa~~~~--~G~P---VVlKi~~~~~~~ 497 (525)
.+..+..+.|++.|+|+ .++.+.++..+..+...+.+ ..|+ ||+|+..-..++
T Consensus 235 ~t~~e~l~~L~~~Gf~v~~~~~~~~~~~~v~~~~~~~~~~R~~l~y~iDGvViKv~~~~~q~ 296 (667)
T 1dgs_A 235 KSQYELLLWLKEKGFPVEHCYEKALGAEGVEEVYRRGLAQRHALPFEADGVVLKLDDLTLWG 296 (667)
T ss_dssp CBHHHHHHHHHHTTCCCCSCEEEEEHHHHHHHHHHHHHHTTTTSSSCCCEEEEEESBTHHHH
T ss_pred CCHHHHHHHHHHCCCCCCccceEeCCHHHHHHHHHHHHHHHhcCCCCCCcEEEEecCHHHHH
Confidence 46778999999999999 68999999988777665433 3666 999997755443
No 300
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=20.38 E-value=5.1e+02 Score=23.86 Aligned_cols=99 Identities=11% Similarity=0.093 Sum_probs=54.3
Q ss_pred CcEEEEecchhHHHH-----HHHHHHHcCCCCCCeee-ecCCCCHHH-HHHHHHHHhcCCCccEEEEEecccccChHHHH
Q psy7785 302 GNIGCLVNGAGLAMA-----TMDIIKLHGGEPANFLD-VGGGVNEES-IIQAFRIISSDSNVKCILVNVFGGIVNCATIA 374 (525)
Q Consensus 302 ~rIaIitnsGG~gvl-----aaD~~~~~Gl~~aNPlD-l~g~a~~~~-~~~al~~ll~dp~vd~vlv~~~~~~~~~~~ia 374 (525)
++|++++..+..... ..+++.++|.... ++. ..++.+.+. +..+.+.+.+.|++|+|+.. .+.+|
T Consensus 128 ~~i~~i~~~~~~~~~~R~~gf~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-------~d~~a 199 (305)
T 3g1w_A 128 GEVAVITLPNQLNHQERTTGFKETLEAEFPAIE-VIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIFAT-------EANGG 199 (305)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHHHHCTTEE-EEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEES-------SHHHH
T ss_pred cEEEEEeCCCcccHHHHHHHHHHHHHhhCCCCE-EEEEecCCCCHHHHHHHHHHHHHhCCCceEEEEC-------CCcch
Confidence 489999865432211 2356666665432 222 245566665 44455555567899988852 35667
Q ss_pred HHHHHHHHhcCCC-CcEEEEeCCcchHHHHHHHhhCC
Q psy7785 375 KGLVNACKSFKLS-IPLVVRLEGTNVQEGKRILDESK 410 (525)
Q Consensus 375 ~~i~~a~~~~~~~-kPivv~~~g~~~~~~~~~L~~~G 410 (525)
-++.+++++.+.. .--++.+.+. .+....+....
T Consensus 200 ~g~~~al~~~g~~~di~vig~d~~--~~~~~~~~~~~ 234 (305)
T 3g1w_A 200 VGVGDAVRLESRAGEIQIISFDTD--KGTLDLVDEGI 234 (305)
T ss_dssp HHHHHHHHHTTCTTTSEEEEESCC--HHHHHHHHTTS
T ss_pred hhHHHHHHhcCCCCCeEEEEeCCC--HHHHHHHHcCc
Confidence 7888887775432 2234444443 33344455444
No 301
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G*
Probab=20.26 E-value=2.1e+02 Score=35.72 Aligned_cols=120 Identities=13% Similarity=0.084 Sum_probs=0.0
Q ss_pred EecchhHHHHHHHHHHHcCCCCCCeeeecCCCCHHHHHHHHHHHhc-CCCccEEEEEecccccChHHHHHHHHHHHHhcC
Q psy7785 307 LVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISS-DSNVKCILVNVFGGIVNCATIAKGLVNACKSFK 385 (525)
Q Consensus 307 itnsGG~gvlaaD~~~~~Gl~~aNPlDl~g~a~~~~~~~al~~ll~-dp~vd~vlv~~~~~~~~~~~ia~~i~~a~~~~~ 385 (525)
++|+||.|++++ +|..+++.+.+.++.+.+ -+.-..+=||+..........--.+++.+.+
T Consensus 610 vsnAGglg~l~~----------------~~~~~~e~l~~~I~~~~~~t~~~~~~gvN~~~~~~~~~~~~~~~~~~~~~-- 671 (2051)
T 2uv8_G 610 TTNAGYTIELAG----------------GGYFSAAGMTAAIDSVVSQIEKGSTFGINLIYVNPFMLQWGIPLIKELRS-- 671 (2051)
T ss_dssp HHHTTCEEEEEG----------------GGCCSHHHHHHHHHHHHHHSCTTCCEEEEEETTCTTHHHHHHHHHHHHHH--
T ss_pred HHcCCcEEEEcc----------------CCCCCHHHHHHHHHHHHHhcCCCCceEEEEeecChhhhhhhHHHHHHHHH--
Q ss_pred CCCcE--EEEeCCc-chHHHHHHHhhCCCCccc-cCCHHHHHHHHHHhhcccCCCCeEEEeCC
Q psy7785 386 LSIPL--VVRLEGT-NVQEGKRILDESKLPLIF-ASDLDEAASLVNACKSFKLSIPLVVRLEG 444 (525)
Q Consensus 386 ~~kPi--vv~~~g~-~~~~~~~~L~~~Gvpvf~-~~s~~~Av~Al~~l~~~~~~~P~~~~l~g 444 (525)
.+.|+ ++...|. ..+.....+...|+++.. ..+...+++......+.....|++.-..|
T Consensus 672 ~gv~i~~v~~~ag~p~~~~~~~~i~~lG~~vi~~~~~~~~a~~~~~~~~~~g~d~~ii~~~~G 734 (2051)
T 2uv8_G 672 KGYPIQFLTIGAGVPSLEVASEYIETLGLKYLGLKPGSIDAISQVINIAKAHPNFPIALQWTG 734 (2051)
T ss_dssp TTCSEEEEEEESSCCCHHHHHHHHHHSCCSCEEECCCSHHHHHHHHHHHHHSTTSCEEEEECC
T ss_pred cCCCcceEEecCCCCchhhHHHHHHHcCCEEEEecCchHHHHHHHHHHHHhCCCceeEEEEEc
No 302
>1kon_A Protein YEBC, YEBC; alpha/beta, two-domains, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics; 2.20A {Escherichia coli} SCOP: e.39.1.1
Probab=20.21 E-value=2.2e+02 Score=27.27 Aligned_cols=61 Identities=15% Similarity=0.251 Sum_probs=48.3
Q ss_pred CCcEEEEecchhHHHHHHHHHHHcCCC---------CCCeeeecCCCCHHHHHHHHHHHhcCCCccEEEEEe
Q psy7785 301 DGNIGCLVNGAGLAMATMDIIKLHGGE---------PANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNV 363 (525)
Q Consensus 301 ~~rIaIitnsGG~gvlaaD~~~~~Gl~---------~aNPlDl~g~a~~~~~~~al~~ll~dp~vd~vlv~~ 363 (525)
.+.+-|+|..--..- ..++|+..|++ |.|++.+.+. ..+.+.+.++.|.++++|..|.-|+
T Consensus 170 ~~~~~v~t~p~~~~~-V~~aL~~~g~~~~~aei~~~P~~~v~l~~e-~~~~~~klid~Led~DDVq~Vy~N~ 239 (249)
T 1kon_A 170 DGAIDVYTAWEEMGK-VRDALEAAGLKADSAEVSMIPSTKADMDAE-TAPKLMRLIDMLEDCDDVQEVYHNG 239 (249)
T ss_dssp TSCEEEEEEGGGHHH-HHHHHHHTTCCCSEEEEEEEESSCCCCCTT-TSHHHHHHHHHHHHSSSEEEEEECC
T ss_pred CceEEEEECHHHHHH-HHHHHHHcCCCeeeeeeEECCCCceecCHH-HHHHHHHHHHHHhcccChhhhhcCC
Confidence 456777887776665 45899999984 7899999765 4567999999999999999888764
No 303
>3n6x_A Putative glutathionylspermidine synthase; domain of unknown function (DUF404), structural genomics; 2.35A {Methylobacillus flagellatus}
Probab=20.18 E-value=1.3e+02 Score=31.65 Aligned_cols=72 Identities=15% Similarity=0.295 Sum_probs=46.0
Q ss_pred CCCCCCCccccCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCCccCCCcceEEEeC--CcccHHHHHHHHhcccccccc
Q psy7785 20 STVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTN--NVQDIPPILEKMIGHKLITKQ 97 (525)
Q Consensus 20 ~GIpvp~~~~~~~~eea~~~a~~lg~~PvVlK~~~~~~~rgK~~~~~~~~GGV~l~~--~~eea~~a~~~l~~~~~~~~~ 97 (525)
.=+|..+++.+.++++...+.+.+. .+|+|+-.-++| + ||.++. +.++-.+..+++...
T Consensus 339 ~il~~VpT~~c~~~~~~~~vl~~l~--~lViKp~~g~gg--~---------gv~iG~~~s~~e~~~~~~~i~~~------ 399 (474)
T 3n6x_A 339 PILSNVPTYQLSKADDLKYVLDNLA--ELVVKEVQGSGG--Y---------GMLVGPAASKQELEDFRQRILAN------ 399 (474)
T ss_dssp CSSEECCCEETTSHHHHHHHHHSGG--GEEEEECCCE----------------EEGGGCCHHHHHHHHHHHHHS------
T ss_pred hhccCCCceecCCHHHHHHHHhchh--heEEEecCCCCC--C---------ceEECCcCCHHHHHHHHHHHHhC------
Confidence 3345455667788888888888886 699999644432 2 677763 666666666666432
Q ss_pred CCCCCcccCeEEEEeeeCCc
Q psy7785 98 TPKTGINVNKVMVAKSVNIT 117 (525)
Q Consensus 98 ~~~~g~~~~~vlVee~~~~~ 117 (525)
...++.|++++..
T Consensus 400 -------p~~yIaQe~v~ls 412 (474)
T 3n6x_A 400 -------PANYIAQPTLALS 412 (474)
T ss_dssp -------GGGEEEEECCCCC
T ss_pred -------CCCEEEeeccCCc
Confidence 2468999998643
Done!