RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7785
(525 letters)
>2fp4_B Succinyl-COA ligase [GDP-forming] beta-chain, mitochondrial; active
site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus
scrofa} SCOP: c.23.4.1 d.142.1.4 PDB: 2fpg_B* 2fpi_B*
2fpp_B* 1euc_B* 1eud_B*
Length = 395
Score = 545 bits (1407), Expect = 0.0
Identities = 202/391 (51%), Positives = 268/391 (68%), Gaps = 33/391 (8%)
Query: 36 ATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT 95
A K LN KE V+KAQILAGGRG G F +G K GVH T + + + + ++MIG+ L T
Sbjct: 31 ALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLAT 90
Query: 96 KQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHL 155
KQTPK G+ VNKVMVA++++I+RETY I+ DR NGPV++ SP GG DIE VAA P L
Sbjct: 91 KQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPEL 150
Query: 156 VKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFR 215
+ ID+ +GI + Q AQ++A+ L F
Sbjct: 151 IFKEQIDIIEGIKD-----------SQ----------------------AQRMAENLGFL 177
Query: 216 GDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKNIF 275
G L+ +AA +++KL+NLFL +DATQ+E+NP ET E +V+ DAKINFDDNAEFRQK+IF
Sbjct: 178 GPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIF 237
Query: 276 SQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVG 335
+ ++ SE++P E +A+KY+L Y+G+DGNI C VNGAGLAMAT DII L+GG+PANFLD+G
Sbjct: 238 AMDDKSENEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLG 297
Query: 336 GGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLE 395
GGV E + QAF+++++D V+ ILVN+FGGIVNCA IA G+ AC+ +L +PLVVRLE
Sbjct: 298 GGVKESQVYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLE 357
Query: 396 GTNVQEGKRILDESKLPLIFASDLDEAASLV 426
GTNV E + IL S LP+ A DL++AA
Sbjct: 358 GTNVHEAQNILTNSGLPITSAVDLEDAAKKA 388
Score = 81.0 bits (201), Expect = 1e-16
Identities = 26/50 (52%), Positives = 34/50 (68%)
Query: 470 AASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 519
A + AC+ +L +PLVVRLEGTNV E + IL S LP+ A DL++AA
Sbjct: 336 ANGITKACRELELKVPLVVRLEGTNVHEAQNILTNSGLPITSAVDLEDAA 385
>2nu8_B SCS-beta, succinyl-COA synthetase beta chain; citric acid cycle,
heterotetramer, ligase, ATP-grAsp fold, R fold; HET:
COA; 2.15A {Escherichia coli} SCOP: c.23.4.1 d.142.1.4
PDB: 1scu_B* 2nu6_B* 1jkj_B* 2nu7_B* 2nu9_B* 2nua_B*
2scu_B* 1jll_B* 1cqj_B* 1cqi_B*
Length = 388
Score = 514 bits (1326), Expect = 0.0
Identities = 153/391 (39%), Positives = 213/391 (54%), Gaps = 40/391 (10%)
Query: 36 ATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT 95
A + +V+K Q+ AGGRG GV N+ +DI E +G +L+T
Sbjct: 31 AEEAASKIGAGPWVVKCQVHAGGRGKA-------GGVKVVNSKEDIRAFAENWLGKRLVT 83
Query: 96 KQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHL 155
QT G VN+++V + +I +E Y V DR V + S GG +IE VA +TPHL
Sbjct: 84 YQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHL 143
Query: 156 VKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFR 215
+ + +D G +Q +++A L
Sbjct: 144 IHKVALDPLTGPMP-----------YQ----------------------GRELAFKLGLE 170
Query: 216 GDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKNIF 275
G L + L +FL D +EINPLV T + ++I +D K+ D NA FRQ ++
Sbjct: 171 GKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLR 230
Query: 276 SQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVG 335
+ S+ DPRE A+++ LNYV +DGNIGC+VNGAGLAM TMDI+KLHGGEPANFLDVG
Sbjct: 231 EMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVG 290
Query: 336 GGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLE 395
GG +E + +AF+II SD VK +LVN+FGGIV C IA G++ A +++P+VVRLE
Sbjct: 291 GGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLE 350
Query: 396 GTNVQEGKRILDESKLPLIFASDLDEAASLV 426
G N + G + L +S L +I A L +AA V
Sbjct: 351 GNNAELGAKKLADSGLNIIAAKGLTDAAQQV 381
Score = 79.8 bits (198), Expect = 3e-16
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 470 AASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 519
A ++ A +++P+VVRLEG N + G + L +S L +I A L +AA
Sbjct: 329 ADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAA 378
>3ufx_B Succinyl-COA synthetase beta subunit; ATP-grAsp fold, ligase; HET:
GDP; 2.35A {Thermus aquaticus}
Length = 397
Score = 444 bits (1145), Expect = e-154
Identities = 129/396 (32%), Positives = 198/396 (50%), Gaps = 54/396 (13%)
Query: 31 EDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIG 90
E+A+ VIKAQ+ GGRG G GV + Q+ + ++G
Sbjct: 29 EEAKRIAEEFGK----RVVIKAQVHVGGRGKA----G---GVKLADTPQEAYEKAQAILG 77
Query: 91 HKLITKQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAA 150
+ G+ V KV+VA++V+I +E Y ++ DR V+++S GG DIE VAA
Sbjct: 78 MNI-------KGLTVKKVLVAEAVDIAKEYYAGLILDRAKKRVVLMLSKEGGVDIEEVAA 130
Query: 151 KTPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIAD 210
+ P + ID H+G A+++ +G+L
Sbjct: 131 ERPEAIHKFWIDPHKGFRPFEAREMVKRAGLEGNLN------------------------ 166
Query: 211 FLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFR 270
K A + L+ + VDA+ EINPLV T + +++ DAKI DDNA FR
Sbjct: 167 ----------KLAQVLVALYRAYEGVDASIAEINPLVVTTDGGIVAADAKIVLDDNALFR 216
Query: 271 QKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPAN 330
++ EV P EV+AS Y YV +DGNIG + NGAGL M T+D++ GG+PAN
Sbjct: 217 HPDLAELREVEAEHPLEVEASNYGFAYVKLDGNIGIIGNGAGLVMYTLDLVNRVGGKPAN 276
Query: 331 FLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPL 390
FLD+GGG + + A +++ D +VK + +N+FGGI +AKG++ A + L+ P+
Sbjct: 277 FLDIGGGAKADVVYNALKVVLKDPDVKGVFINIFGGITRADEVAKGVIRALEEGLLTKPV 336
Query: 391 VVRLEGTNVQEGKRILDESKLPLIFASDLDEAASLV 426
V+R+ GT +E K++L+ P+ EAA +
Sbjct: 337 VMRVAGTAEEEAKKLLEGK--PVYMYPTSIEAAKVT 370
Score = 69.9 bits (172), Expect = 4e-13
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 470 AASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAA 519
A ++ A + L+ P+V+R+ GT +E K++L+ P+ EAA
Sbjct: 320 AKGVIRALEEGLLTKPVVMRVAGTAEEEAKKLLEGK--PVYMYPTSIEAA 367
>3mwd_A ATP-citrate synthase; ATP-grAsp, phosphohistidine, organic acid,
lyase, transferas; HET: CIT; 2.10A {Homo sapiens} PDB:
3mwe_A*
Length = 425
Score = 372 bits (958), Expect = e-125
Identities = 83/413 (20%), Positives = 136/413 (32%), Gaps = 82/413 (19%)
Query: 31 EDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSG-VHFTNNVQDIPPILEKMI 89
D L + V+K L RG K G V + + L+ +
Sbjct: 38 TDWARLLQDHPWLLSQNLVVKPDQLIKRRG--------KLGLVGVNLTLDGVKSWLKPRL 89
Query: 90 GHKLITKQTPKTGINVNKVMVAKSV--NITRETYFCIVQDRLHNGPVVIISPSGGTDIEN 147
G + K + ++ V + E Y CI R G V+ GG D+ +
Sbjct: 90 GQEA---TVGKATGFLKNFLIEPFVPHSQAEEFYVCIYATR--EGDYVLFHHEGGVDVGD 144
Query: 148 VAAKTPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQK 207
V AK + +D + +
Sbjct: 145 VDAKAQK--LLVGVDEKLNPEDIKKHLLVHAP---------------------------- 174
Query: 208 IADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNA 267
D K A+ + L+N + + T LEINPLV T + V +D D A
Sbjct: 175 --------EDKKEILASFISGLFNFYEDLYFTYLEINPLVVTKD-GVYVLDLAAKVDATA 225
Query: 268 EFRQKNIF-------------SQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGLA 314
++ K + E +D + L + G I +V G G +
Sbjct: 226 DYICKVKWGDIEFPPPFGREAYPEEAYIADLDAKSGASLKLTLLNPKGRIWTMVAGGGAS 285
Query: 315 MATMDIIKLHGG--EPANFLDVGGGVNEESIIQAFRIISS----DSNVKCILVNVFGGIV 368
+ D I GG E AN+ + G +E+ + I S + + ++ + G I
Sbjct: 286 VVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGKILIIGGSIA 345
Query: 369 NCATIA---KGLVNACKSFK-----LSIPLVVRLEGTNVQEGKRILDESKLPL 413
N +A KG+V A + ++ + + VR G N QEG R++ E
Sbjct: 346 NFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTT 398
Score = 51.9 bits (125), Expect = 3e-07
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 473 LVNACKSFK-----LSIPLVVRLEGTNVQEGKRILDESKLPL 509
+V A + ++ + + VR G N QEG R++ E
Sbjct: 357 IVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTT 398
>3pff_A ATP-citrate synthase; phosphohistidine, organic acid, ATP-grAsp,
lyase, transferas; HET: TLA ADP; 2.30A {Homo sapiens}
Length = 829
Score = 142 bits (360), Expect = 3e-36
Identities = 88/457 (19%), Positives = 152/457 (33%), Gaps = 91/457 (19%)
Query: 5 FNQQIANFSYLVKPVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHF 64
+ I S + T L N V+K L RG
Sbjct: 15 LYKFICTTSAIQNRFKYARVTPDTDWARLLQDHPWLLSQNL---VVKPDQLIKRRG---- 67
Query: 65 DNGFKSG-VHFTNNVQDIPPILEKMIGHKL-ITKQTPKTGINVNKVMVAKSV--NITRET 120
K G V + + L+ +G + + K T + ++ V + E
Sbjct: 68 ----KLGLVGVNLTLDGVKSWLKPRLGQEATVGKATGF----LKNFLIEPFVPHSQAEEF 119
Query: 121 YFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGITESLAQDIADFLE 180
Y CI R G V+ GG D+ +V AK + + + V + +
Sbjct: 120 YVCIYATR--EGDYVLFHHEGGVDVGDVDAK----AQKLLVGVDEKLNPE---------- 163
Query: 181 FQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQ 240
D+K + D K A+ + L+N + + T
Sbjct: 164 ---DIKKHLLVHAPE---------------------DKKEILASFISGLFNFYEDLYFTY 199
Query: 241 LEINPLVETDEREVISVDAKINFDDNAEFRQKN-------------IFSQNEVSESDPRE 287
LEINPLV T + V +D D A++ K E +D
Sbjct: 200 LEINPLVVTKD-GVYVLDLAAKVDATADYICKVKWGDIEFPPPFGREAYPEEAYIADLDA 258
Query: 288 VDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGG--EPANFLDVGGGVNEESIIQ 345
+ L + G I +V G G ++ D I GG E AN+ + G +E+
Sbjct: 259 KSGASLKLTLLNPKGRIWTMVAGGGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYD 318
Query: 346 ----AFRIISSDSNVKCILVNVFGGIVNCATIA---KGLVNACKSFKLS-----IPLVVR 393
+++ + + ++ + G I N +A KG+V A + ++ + + VR
Sbjct: 319 YAKTILSLMTREKHPDGKILIIGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVR 378
Query: 394 LEGTNVQEGKRIL----DESKLPLIFASDLDEAASLV 426
G N QEG R++ + +P+ ++V
Sbjct: 379 RGGPNYQEGLRVMGEVGKTTGIPIHVFGTETHMTAIV 415
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 73.9 bits (181), Expect = 8e-14
Identities = 85/491 (17%), Positives = 154/491 (31%), Gaps = 165/491 (33%)
Query: 157 KTIPIDVHQGITESLAQD---------IADFLEFQGDL----KAKAATEV-QKLWNLFLS 202
K +P TE A D + FL + L K +V F +
Sbjct: 39 KILPEP-----TEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN 93
Query: 203 SLAQKIADFLEFRG-DLKAKAA-------TEVQKLWNLFLS-VDATQLEINPLVETDE-- 251
+L G D+ A AA T + K L + + A + P +
Sbjct: 94 -------CYL--EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 252 --REVISVDAKI--------N----FDDNAEFRQKNIF-------------SQNEVSESD 284
R V +A++ N F+ E R +++ S +SE
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFE---ELR--DLYQTYHVLVGDLIKFSAETLSELI 199
Query: 285 PREVDASKYNLNYV-GMDGNIGCLVNGAG-------LAMA--TMDII------------K 322
+DA K + G++ I + L + +I K
Sbjct: 200 RTTLDAEKV---FTQGLN--ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAK 254
Query: 323 LHGGEPANFLDVGGGV--NEESIIQAFRIISSDS------NVKCILVNVF--GGIVNC-- 370
L G P G + + ++ A I +DS +V+ + +F G V C
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIG--VRCYE 312
Query: 371 ----ATIAKGLVNACKSFKLSIP---LVVRLEGTNVQEGKRILDE--SKLPLIFASDLDE 421
++ ++ +P L + ++ + +++ S LP +
Sbjct: 313 AYPNTSLPPSILEDSLENNEGVPSPMLSIS--NLTQEQVQDYVNKTNSHLPA--GKQV-- 366
Query: 422 AASLVNACKSFKLSIP------LVVRLEGTNVQEGKRILDESKLPL-------------I 462
SLVN K+ +S P L + L G LD+S++P +
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG---LDQSRIPFSERKLKFSNRFLPV 423
Query: 463 FA---SD-LDEAASLVN--------ACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLI 510
+ S L A+ L+N + + + IP+ +G++++ L S I
Sbjct: 424 ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV----LSGSISERI 479
Query: 511 FASDLDEAANW 521
+ W
Sbjct: 480 VDCIIRLPVKW 490
Score = 65.5 bits (159), Expect = 3e-11
Identities = 102/613 (16%), Positives = 193/613 (31%), Gaps = 199/613 (32%)
Query: 4 AFNQQIANF-SYLVKPVSTVHSTDKVCLEDARTATNIL--KDLNFKEYVIKA-------Q 53
+Q F L +P T+ +D T L K L + +++ Q
Sbjct: 29 IASQLQEQFNKILPEP------TEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ 82
Query: 54 ILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQTPKTGINVNKVMVAKS 113
+L L F+N + G N++ H L K + N + K+
Sbjct: 83 VLN--LCLTEFENCYLEG----NDI------------HALAAKLLQE-----NDTTLVKT 119
Query: 114 VNITRETYF--CIVQDRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPI---DVHQGIT 168
+ + Y I+ R P S S A + + + I QG T
Sbjct: 120 KELIK-NYITARIMAKR----PFDKKSNSALFR----AVGEGN-AQLVAIFGG---QGNT 166
Query: 169 ESLAQDIADFLEFQGDLKAKAATEVQKLWNL---FLSSLAQKIADFLEFRGDLKAKAATE 225
+ D+ E E++ L+ + L + A+ L +L + +
Sbjct: 167 D-------DYFE-----------ELRDLYQTYHVLVGDLIKFSAETLS---EL-IRTTLD 204
Query: 226 VQKLWNLFLSVDATQ-LEINPLVETDEREVIS-----------------VDAKINFDDNA 267
+K++ ++ + LE NP D+ ++S V AK+
Sbjct: 205 AEKVFTQ--GLNILEWLE-NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG 261
Query: 268 EFRQ---------KNIFSQNEVSESDPRE--VDASKYNLNYVGMDGNIGCLVNGA----G 312
E R + + + ++E+D E + + + + IG A
Sbjct: 262 ELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF---IGVRCYEAYPNTS 318
Query: 313 LAMATMDIIKLHG-GEPANFLDVGGGVNE--ESIIQAFR-IISSDSNVKCILVNVFGGIV 368
L + ++ + G P+ L + E + + + + V
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV------------ 366
Query: 369 NCATIAKGLVNACKSFKLSIP------LVVRLEGTNVQEGKRILDESKLPL--------- 413
I+ LVN K+ +S P L + L G LD+S++P
Sbjct: 367 ---EIS--LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG---LDQSRIPFSERKLKFSN 418
Query: 414 ----IFA---SD-LDEAASLVN--------ACKSFKLSIPLVVRLEGTNVQEGKRILDES 457
+ + S L A+ L+N + + + IP+ +G++++ + E
Sbjct: 419 RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER 478
Query: 458 KLPLIFASDLD-EAASLVNAC--------KSFKLSIPLVVR-LEGTNVQEGKRILDESKL 507
+ I + E + A + L L R +GT G R+
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHILDFGPGGASGLG-VLTHRNKDGT----GVRV------ 527
Query: 508 PLIFASDLDEAAN 520
I A LD +
Sbjct: 528 --IVAGTLDINPD 538
Score = 52.7 bits (126), Expect = 3e-07
Identities = 64/333 (19%), Positives = 104/333 (31%), Gaps = 114/333 (34%)
Query: 110 VAKSV-----NITRETY-FCIVQDRLHNGPVVIISPSG--GTDI-ENVAA---KTPHLVK 157
A+ V N ++TY F I+ ++N + I G G I EN +A +T K
Sbjct: 1641 AAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGK 1700
Query: 158 TIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWN----LFLSSLAQKIADFLE 213
+ + I E F+ + +AT+ L L A
Sbjct: 1701 LKTEKIFKEINEHSTSYT-----FRSEKGLLSATQ-----FTQPALTLMEKAA------- 1743
Query: 214 FRGDLKAKAATEVQKLWNLF--LSVDATQL-EINPLVETDEREVISVDAKINFDDNAE-- 268
F DLK+K + F S L E L +V+S + E
Sbjct: 1744 FE-DLKSKG---LIPADATFAGHS-----LGEYAALASL--ADVMS------IESLVEVV 1786
Query: 269 -FRQKNIFSQNEVSESDPR-EVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGG 326
+R Q V PR E+ S Y GM +N
Sbjct: 1787 FYRGM--TMQVAV----PRDELGRSNY-----GM-----IAIN----------------- 1813
Query: 327 EPANFLDVGGGVNEESIIQAFRIISSDSNVKCILVNVFGGIVNCAT----IAKG------ 376
P V ++E++ + + +VN + N A G
Sbjct: 1814 -PGR---VAASFSQEALQYVVERVGKRTGWLVEIVN-Y----NVENQQYVAA-GDLRALD 1863
Query: 377 -LVNACKSFKL-SIPLVVRLEGT-NVQEGKRIL 406
+ N KL I + + L+ + +++E + L
Sbjct: 1864 TVTNVLNFIKLQKIDI-IELQKSLSLEEVEGHL 1895
Score = 34.6 bits (79), Expect = 0.10
Identities = 51/266 (19%), Positives = 87/266 (32%), Gaps = 87/266 (32%)
Query: 12 FSYL--VK--PVS-TVHST-----------DKVCLE---DARTAT-NILKDLNFKEYVIK 51
FS L V PV+ T+H + E D + T I K++N
Sbjct: 1659 FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEH---ST 1715
Query: 52 AQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPIL--EKMIGHKLITKQTPKTGINVNKVM 109
+ +GL + T Q P + EK + + K I +
Sbjct: 1716 SYTFRSEKGL----------LSATQFTQ--PALTLMEKAA-FEDLKS---KGLIPADATF 1759
Query: 110 -------------VAKSVNITRETYFCIVQDRLHNGPVV-IISPSGGTDIENV--AAKTP 153
+A ++I E+ +V R G + + P N A P
Sbjct: 1760 AGHSLGEYAALASLADVMSI--ESLVEVVFYR---GMTMQVAVPRDELGRSNYGMIAINP 1814
Query: 154 HLV-KTIPIDVHQGITESLAQDIADFLE---F-----Q----GDLKAKAATEVQKLWNLF 200
V + + Q + E + + +E + Q GDL+A + + N+
Sbjct: 1815 GRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRA-----LDTVTNV- 1868
Query: 201 LSSL-AQKIADFLEFRGDLKAKAATE 225
L+ + QKI D +E L+ + E
Sbjct: 1869 LNFIKLQKI-DIIE----LQKSLSLE 1889
Score = 31.2 bits (70), Expect = 1.0
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 7/48 (14%)
Query: 8 QIANFSYLVKPVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQIL 55
+I N Y V+ V + D L+ T TN+L + ++ I L
Sbjct: 1842 EIVN--YNVENQQYVAAGDLRALD---TVTNVLNFIKLQK--IDIIEL 1882
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 2e-04
Identities = 63/472 (13%), Positives = 130/472 (27%), Gaps = 140/472 (29%)
Query: 27 KVCLEDARTATNILKD-------------LNFKEYVIKAQILAGGRGLGH-FDNGFKSGV 72
K + A ++ LN K +L + L + D + S
Sbjct: 163 KTWV-----ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 73 HFTNNVQDIPPILEKMIGHKLITKQTPKTGI---NVNKVMVAKSVNI-------TRETYF 122
++N++ ++ + L +K + NV + N+ TR
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ- 276
Query: 123 CIVQDRLHNGPVVIIS----PSGGTDIENVA--AKT--------PHLVKTI-PIDVHQGI 167
V D L IS T E + K P V T P I
Sbjct: 277 --VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR-RLSII 333
Query: 168 TESLAQDIA---------------------DFLE-------------FQGDLKAKAATEV 193
ES+ +A + LE F +
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL-L 392
Query: 194 QKLWNLFLSSLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDERE 253
+W + S + + L ++ + + +++L + L R
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL----HRS 448
Query: 254 VISVDAKINFDDNAEFRQKNIFSQNEVSESDPREVDASKYNLNYVGMDGNIGCLVNGAGL 313
++ + F +++ P +D +Y +++G
Sbjct: 449 IV-----------DHYNIPKTFDSDDLI---PPYLD--QYFYSHIGHH------------ 480
Query: 314 AMATMDIIKLHGGEPANFLDVGGGVNEESIIQAFRIISSDSNVKCI--LVNVFGG----- 366
+ ++ + FLD ++ +I + ++N
Sbjct: 481 -LKNIEHPERMTLFRMVFLDF-------RFLEQ-KIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 367 --IVNCATIAKGLVNACKSFKLSI-PLVVRLEGTN-VQ-----EGKRILDES 409
I + + LVNA F I ++ + T+ ++ E + I +E+
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
Score = 30.2 bits (67), Expect = 2.3
Identities = 38/242 (15%), Positives = 68/242 (28%), Gaps = 71/242 (29%)
Query: 2 EMAFNQQIANFSYLVK----PVSTVHSTDKVCLEDARTATNILKDLNFK---EYVIKAQI 54
M ++ +S + K ++ S + + L+ Y I
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPS----IYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 55 LAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLITKQTPKTGINVNKVMVAKSV 114
+ + D F S H IGH L + + +
Sbjct: 460 DSDDLIPPYLDQYFYS--H---------------IGHHLKNIEH------------PERM 490
Query: 115 NITRETY--FCIVQDRL-HNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGITESL 171
+ R + F ++ ++ H+ S S ++ + P++ P E L
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY------ERL 544
Query: 172 AQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEF-----RGDLKAKAATEV 226
I DFL K NL S K D L + +A +V
Sbjct: 545 VNAILDFLP-------KIEE------NLICS----KYTDLLRIALMAEDEAIFEEAHKQV 587
Query: 227 QK 228
Q+
Sbjct: 588 QR 589
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken
ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A
{Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Length = 457
Score = 39.5 bits (93), Expect = 0.002
Identities = 22/129 (17%), Positives = 45/129 (34%), Gaps = 25/129 (19%)
Query: 309 NGAGLAMATMDIIKLHGGEPANF---------------------LDVGGGVNEESIIQAF 347
N G + T D + G + A +D+ E +
Sbjct: 301 NAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGEDYYRTA 360
Query: 348 RIISSDSNVKCILV-NVFGGIVN--CATIAKGLVNACKSFKLSIP-LVVRLEGTNVQEGK 403
+++ D NV ++ V A+G++ A K P L + + G ++ K
Sbjct: 361 KLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGYVSEKAK 420
Query: 404 RILDESKLP 412
+L+++ +P
Sbjct: 421 ELLEKNGIP 429
>2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma
subunit; heterodimer, beta-alpha-barrels,
oxidoreductase; HET: B12; 1.90A {Carboxydothermus
hydrogenoformans} PDB: 2ycl_A*
Length = 445
Score = 33.4 bits (76), Expect = 0.21
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 403 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLI 462
+ + LP I ++ A+ + + PL+ N ++ + + +PL
Sbjct: 148 ATAREVTDLPFILIGTPEQLAAALETEGANN---PLLYAATADNYEQMVELAKKYNVPLT 204
Query: 463 -FASDLDEAASLVNACKSF 480
A LD A LV +
Sbjct: 205 VSAKGLDALAELVQKITAL 223
Score = 29.1 bits (65), Expect = 4.3
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Query: 451 KRILDESKLPLIFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLI 510
+ + LP I ++ A+ + + PL+ N ++ + + +PL
Sbjct: 148 ATAREVTDLPFILIGTPEQLAAALETEGANN---PLLYAATADNYEQMVELAKKYNVPLT 204
Query: 511 -FASDLDEAAN 520
A LD A
Sbjct: 205 VSAKGLDALAE 215
>1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics,
JOI for structural genomics, JCSG; HET: GOL; 2.40A
{Thermotoga maritima} SCOP: c.1.10.1
Length = 230
Score = 31.8 bits (73), Expect = 0.40
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 45 FKEYVIKAQILAGG-RGLGHFDNGFKSGVHFTNNVQDIPP-ILEKMIGHKLITK 96
+ Y + +I+A R H GV + +P +LEK+ H +
Sbjct: 163 YNNYGFETEIIAASIRHPMHVVEAALMGVD----IVTMPFAVLEKLFKHPMTDL 212
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A
{Bacillus subtilis}
Length = 212
Score = 31.8 bits (73), Expect = 0.41
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 45 FKEYVIKAQILAGG-RGLGHFDNGFKSGVHFTNNVQDIPP-ILEKMIGHKLITK 96
F + + QI+A R H G H + +P ++ + H L K
Sbjct: 152 FDIHGLDTQIIAASIRHPQHVTEAALRGAH----IGTMPLKVIHALTKHPLTDK 201
>1wx0_A Transaldolase; structural genomics, riken structural
genomics/proteomics initiative, RSGI, transferas; 2.27A
{Thermus thermophilus HB8} SCOP: c.1.10.1
Length = 223
Score = 31.5 bits (72), Expect = 0.49
Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 8/55 (14%)
Query: 45 FKEYVIKAQILAGG-RGLGHFDNGFKSGVH-FTNNVQDIPP-ILEKMIGHKLITK 96
+ + +++A R H G T +P + ++++ H L
Sbjct: 160 IQVQDLPVKVIAASIRHPRHVTEAALLGADIAT-----MPHAVFKQLLKHPLTDI 209
>1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain
swapping, lyase; 1.93A {Escherichia coli} SCOP: c.1.10.1
Length = 220
Score = 31.1 bits (71), Expect = 0.62
Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 45 FKEYVIKAQILAGG-RGLGHFDNGFKSGVH-FTNNVQDIPP-ILEKMIGHKLITK 96
K + +A++LA + + +G T +P + ++MI + +
Sbjct: 153 LKMHAPQAKVLAASFKTPRQALDCLLAGCESIT-----LPLDVAQQMISYPAVDA 202
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational
selection, domain swapping transferase; HET: I22; 1.65A
{Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A*
3s1w_A*
Length = 223
Score = 31.0 bits (71), Expect = 0.63
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 6/54 (11%)
Query: 45 FKEYVIKAQILAGG-RGLGHFDNGFKSGVHFTNNVQDIPP-ILEKMIGHKLITK 96
F Y+IK QIL R H G V +P +L+ ++ H +
Sbjct: 154 FNNYIIKTQILVASIRNPIHVLRSAVIGAD----VVTVPFNVLKSLMKHPKTDE 203
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine
nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A
{Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A*
1nf7_A* 1b3o_A* 1nfb_A*
Length = 514
Score = 29.8 bits (68), Expect = 2.6
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 13/55 (23%)
Query: 389 PLVVRLEGTNVQEGKRILDES---KLP----------LIFASDLDEAASLVNACK 430
LVV G ++E IL S KLP +I +DL + A K
Sbjct: 184 ELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRDYPLASK 238
Score = 29.8 bits (68), Expect = 2.6
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 13/55 (23%)
Query: 437 PLVVRLEGTNVQEGKRILDES---KLP----------LIFASDLDEAASLVNACK 478
LVV G ++E IL S KLP +I +DL + A K
Sbjct: 184 ELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDLKKNRDYPLASK 238
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET:
ATP; 3.46A {Homo sapiens}
Length = 319
Score = 28.9 bits (65), Expect = 4.5
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 18/63 (28%)
Query: 156 VKTIPIDVHQGITESLAQDIA---DFLEFQG----DLKAKAATEVQKLWNLFLSSLAQKI 208
I +DV++ +AQ+I +L +G DLK+K N+F + I
Sbjct: 122 DAKIVLDVNKTR--QIAQEIVKGMGYLHAKGILHKDLKSK---------NVFYDNGKVVI 170
Query: 209 ADF 211
DF
Sbjct: 171 TDF 173
>2ot3_A RAB5 GDP/GTP exchange factor; rabex-5, VPS9 domain, vesicular
traffic, protein transport; 2.10A {Homo sapiens} SCOP:
a.222.1.1 PDB: 1txu_A
Length = 274
Score = 27.8 bits (61), Expect = 8.3
Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 12/92 (13%)
Query: 164 HQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFRGDLKAKAA 223
H + + +F+EF + ++ FLE + +
Sbjct: 5 HHHHSIETDRVSKEFIEFLKTFHKTG------------QEIYKQTKLFLEGMHYKRDLSI 52
Query: 224 TEVQKLWNLFLSVDATQLEINPLVETDEREVI 255
E + F A +++ V + E I
Sbjct: 53 EEQSECAQDFYHNVAERMQTRGKVPPERVEKI 84
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein,
periplasmic-binding P transport protein; HET: MPO; 1.70A
{Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Length = 324
Score = 27.8 bits (62), Expect = 8.5
Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 2/74 (2%)
Query: 136 IISPSGGTDIENVAAKTPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQK 195
++ G V H + + ++ Q AD Q L +
Sbjct: 252 TLAQVSGLPPAVVERTLAHRPPASVQPLSAQVIKAQ-QATADLFYAQRLLPKRVLVA-PA 309
Query: 196 LWNLFLSSLAQKIA 209
+W + AQ ++
Sbjct: 310 VWRAPDAGTAQAVS 323
>1i82_A Xylanase A, endo-1,4-beta-xylanase A; cellobiose complex,
hydrolase; HET: BGC; 1.90A {Thermotoga maritima} SCOP:
b.1.9.2 PDB: 1i8a_A* 1i8u_A
Length = 189
Score = 27.6 bits (61), Expect = 8.8
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 8/67 (11%)
Query: 203 SLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKIN 262
+ ++I G L A +V+ LW D L + L + + ++
Sbjct: 21 NTTEEIETKAVAMGSLDKNATAKVRVLW------DENYLYV--LAIVKDPVLNKDNSNPW 72
Query: 263 FDDNAEF 269
D+ E
Sbjct: 73 EQDSVEI 79
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha
barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio
vulnificus} PDB: 2plk_A*
Length = 419
Score = 28.0 bits (63), Expect = 9.3
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 290 ASKYNLNYVGMDGNIG--CL-----VNGAGLAMATMDIIKLHGGEPANFLDVGGG 337
A ++N+ G+ ++G V M+ + G + LD+GGG
Sbjct: 201 AKEWNIRIKGLSFHVGSQTTNPNKYVEAIHTCRHVMEQVVERGLPALSTLDIGGG 255
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.382
Gapped
Lambda K H
0.267 0.0827 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,695,440
Number of extensions: 475937
Number of successful extensions: 1243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1215
Number of HSP's successfully gapped: 53
Length of query: 525
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 427
Effective length of database: 3,965,535
Effective search space: 1693283445
Effective search space used: 1693283445
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.7 bits)