RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7785
(525 letters)
>d1eucb1 c.23.4.1 (B:246-393) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 148
Score = 188 bits (478), Expect = 3e-58
Identities = 85/143 (59%), Positives = 110/143 (76%)
Query: 284 DPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESI 343
+P E +A+KY+L Y+G+DGNI C VNGAGLAMAT DII L+GG+PANFLD+GGGV E +
Sbjct: 1 EPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKESQV 60
Query: 344 IQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGK 403
QAF+++++D V+ ILVN+FGGIVNCA IA G+ AC+ +L +PLVVRLEGTNV E +
Sbjct: 61 YQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTNVHEAQ 120
Query: 404 RILDESKLPLIFASDLDEAASLV 426
IL S LP+ A DL++AA
Sbjct: 121 NILTNSGLPITSAVDLEDAAKKA 143
Score = 68.3 bits (167), Expect = 2e-14
Identities = 26/51 (50%), Positives = 34/51 (66%)
Query: 470 AASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAAN 520
A + AC+ +L +PLVVRLEGTNV E + IL S LP+ A DL++AA
Sbjct: 91 ANGITKACRELELKVPLVVRLEGTNVHEAQNILTNSGLPITSAVDLEDAAK 141
>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 150
Score = 187 bits (476), Expect = 7e-58
Identities = 83/143 (58%), Positives = 106/143 (74%)
Query: 284 DPREVDASKYNLNYVGMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVNEESI 343
DPRE A+++ LNYV +DGNIGC+VNGAGLAM TMDI+KLHGGEPANFLDVGGG +E +
Sbjct: 1 DPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERV 60
Query: 344 IQAFRIISSDSNVKCILVNVFGGIVNCATIAKGLVNACKSFKLSIPLVVRLEGTNVQEGK 403
+AF+II SD VK +LVN+FGGIV C IA G++ A +++P+VVRLEG N + G
Sbjct: 61 TEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGA 120
Query: 404 RILDESKLPLIFASDLDEAASLV 426
+ L +S L +I A L +AA V
Sbjct: 121 KKLADSGLNIIAAKGLTDAAQQV 143
Score = 68.3 bits (167), Expect = 3e-14
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 462 IFASDLDEAASLVNACKSFKLSIPLVVRLEGTNVQEGKRILDESKLPLIFASDLDEAAN 520
A ++ A +++P+VVRLEG N + G + L +S L +I A L +AA
Sbjct: 83 GIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQ 141
>d2nu7b2 d.142.1.4 (B:1-238) Succinyl-CoA synthetase, beta-chain,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 238
Score = 114 bits (286), Expect = 1e-29
Identities = 69/247 (27%), Positives = 106/247 (42%), Gaps = 40/247 (16%)
Query: 36 ATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT 95
A + +V+K Q+ AGGRG GV N+ +DI E +G +L+T
Sbjct: 31 AEEAASKIGAGPWVVKCQVHAGGRGKAG-------GVKVVNSKEDIRAFAENWLGKRLVT 83
Query: 96 KQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHL 155
QT G VN+++V + +I +E Y V DR V + S GG +IE VA +TPHL
Sbjct: 84 YQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHL 143
Query: 156 VKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFR 215
+ + +D G +++A L +G L + L +FL
Sbjct: 144 IHKVALDPLTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLER------------ 191
Query: 216 GDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKNIF 275
D +EINPLV T + ++I +D K+ D NA FRQ ++
Sbjct: 192 ---------------------DLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLR 230
Query: 276 SQNEVSE 282
+ S+
Sbjct: 231 EMRDQSQ 237
>d1eucb2 d.142.1.4 (B:0-245) Succinyl-CoA synthetase, beta-chain,
N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 246
Score = 106 bits (265), Expect = 8e-27
Identities = 117/248 (47%), Positives = 156/248 (62%), Gaps = 33/248 (13%)
Query: 36 ATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFKSGVHFTNNVQDIPPILEKMIGHKLIT 95
A K LN KE V+KAQILAGGRG G F +G K GVH T + + + + ++MIG+ L T
Sbjct: 32 ALEAAKRLNAKEIVLKAQILAGGRGKGVFSSGLKGGVHLTKDPEVVGQLAKQMIGYNLAT 91
Query: 96 KQTPKTGINVNKVMVAKSVNITRETYFCIVQDRLHNGPVVIISPSGGTDIENVAAKTPHL 155
KQTPK G+ VNKVMVA++++I+RETY I+ DR NGPV++ SP GG DIE VAA P L
Sbjct: 92 KQTPKEGVKVNKVMVAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPEL 151
Query: 156 VKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAATEVQKLWNLFLSSLAQKIADFLEFR 215
+ ID+ +GI +S AQ +A+ L F G L+ +AA +++KL+NLFL
Sbjct: 152 IFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKI------------ 199
Query: 216 GDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKINFDDNAEFRQKNIF 275
DATQ+E+NP ET E +V+ DAKINFDDNAEFRQK+IF
Sbjct: 200 ---------------------DATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIF 238
Query: 276 SQNEVSES 283
+ ++ SE+
Sbjct: 239 AMDDKSEN 246
>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA,
domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}
Length = 163
Score = 76.3 bits (187), Expect = 5e-17
Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 27/146 (18%)
Query: 303 NIGCLVNGAGLAMATMDIIKLHGGEPA---------------------NFLDVGGGVNEE 341
+ + N G + T D + G + A N +D+ E
Sbjct: 5 KVAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSFLPPMAAVKNPVDMIASARGE 64
Query: 342 SIIQAFRIISSDSNVKCILVNVF---GGIVNCATIAKGLVNACKSFKLSIP-LVVRLEGT 397
+ +++ D NV ++ + A+G++ A K P L + + G
Sbjct: 65 DYYRTAKLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFMAGY 124
Query: 398 NVQEGKRILDESKLPLIFASDLDEAA 423
++ K +L+++ +P ++ A
Sbjct: 125 VSEKAKELLEKNGIPTY--ERPEDVA 148
Score = 34.7 bits (79), Expect = 0.012
Identities = 10/54 (18%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 468 DEAASLVNACKSFKLSIP-LVVRLEGTNVQEGKRILDESKLPLIFASDLDEAAN 520
+ A ++ A K P L + + G ++ K +L+++ +P ++ A+
Sbjct: 98 EHAEGIIRAVKEVNNEKPVLAMFMAGYVSEKAKELLEKNGIPTY--ERPEDVAS 149
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 28.6 bits (63), Expect = 1.6
Identities = 30/182 (16%), Positives = 55/182 (30%), Gaps = 15/182 (8%)
Query: 9 IANFSYLVKPVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGF 68
+A ++ ++ R N KDL F E I R
Sbjct: 40 LAVELEHQLVRDRRVHAYRLDGDNIRFGLN--KDLGFSEADRNENIR---RIAEVAKLFA 94
Query: 69 KSGVHFTNNVQDIPPILEKMIGHKLITKQTP--KTGINVNKVMVAKSVNITRETYFCIVQ 126
S + +L TP +TG+ +V V V + + +
Sbjct: 95 DSNSIAITSFISPYRKDRDTA-RQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLY 153
Query: 127 DRLHNGPVVIISPSGGTDIENVAAKTPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLK 186
+ G + + G A P + + ++ + + I D+L+ +G L
Sbjct: 154 KKAREGVIKEFT---GISAPYEAPANPEVH----VKNYELPVQDAVKQIIDYLDTKGYLP 206
Query: 187 AK 188
AK
Sbjct: 207 AK 208
>d1i8aa_ b.1.9.2 (A:) Xylanase 10A {Thermotoga maritima [TaxId:
2336]}
Length = 189
Score = 27.0 bits (59), Expect = 3.8
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 8/67 (11%)
Query: 203 SLAQKIADFLEFRGDLKAKAATEVQKLWNLFLSVDATQLEINPLVETDEREVISVDAKIN 262
+ ++I G L A +V+ LW D L + L + + ++
Sbjct: 21 NTTEEIETKAVAMGSLDKNATAKVRVLW------DENYLYV--LAIVKDPVLNKDNSNPW 72
Query: 263 FDDNAEF 269
D+ E
Sbjct: 73 EQDSVEI 79
>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermotoga maritima [TaxId:
2336]}
Length = 169
Score = 26.8 bits (59), Expect = 4.2
Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 1/84 (1%)
Query: 281 SESDPREVDASKYNLNYV-GMDGNIGCLVNGAGLAMATMDIIKLHGGEPANFLDVGGGVN 339
+E DP ++ +++V G A + + + V G N
Sbjct: 76 AEPDPSKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAKGEDITVVIGCN 135
Query: 340 EESIIQAFRIISSDSNVKCILVNV 363
E+ + IIS SN V
Sbjct: 136 EDQLKPEHTIISCASNEYGYSNRV 159
>d2gyck1 d.41.4.2 (K:3-133) Ribosomal protein L16p {Escherichia coli
[TaxId: 562]}
Length = 131
Score = 25.9 bits (57), Expect = 7.3
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 336 GGVNEESIIQAFRIISSDSNVKCILV 361
GV EE +AF++ ++ +K V
Sbjct: 104 DGVPEELAREAFKLAAAKLPIKTTFV 129
>d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate
aldolase/transaldolase {Thermus thermophilus [TaxId:
274]}
Length = 211
Score = 26.3 bits (57), Expect = 8.8
Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 11/89 (12%)
Query: 10 ANFSYLVKPVSTVHSTDKVCLEDARTATNILKDLNFKEYVIKAQILAGGRGLGHFDNGFK 69
A SY+ + V E R +++ + VI A I R H
Sbjct: 130 AGASYVSPFLGRVDDISWDGGELLREIVEMIQVQDLPVKVIAASI----RHPRHVTEAAL 185
Query: 70 SGVH-FTNNVQDIPP-ILEKMIGHKLITK 96
G T +P + ++++ H L
Sbjct: 186 LGADIAT-----MPHAVFKQLLKHPLTDI 209
>d1jala2 d.15.10.2 (A:279-363) YchF GTP-binding protein, C-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 85
Score = 24.6 bits (54), Expect = 9.1
Identities = 11/40 (27%), Positives = 16/40 (40%)
Query: 151 KTPHLVKTIPIDVHQGITESLAQDIADFLEFQGDLKAKAA 190
P I D +G + DF++F G+ AK A
Sbjct: 22 TAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKEA 61
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.382
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,821,474
Number of extensions: 84011
Number of successful extensions: 295
Number of sequences better than 10.0: 1
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 21
Length of query: 525
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 436
Effective length of database: 1,185,626
Effective search space: 516932936
Effective search space used: 516932936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.6 bits)