BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7786
(252 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 73/129 (56%), Gaps = 5/129 (3%)
Query: 124 DIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRD 183
+ RR+ I V G + P +F P +++ + + +PT IQ QG P ALSG D
Sbjct: 23 ETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLD 82
Query: 184 IIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQY 242
++G+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q +
Sbjct: 83 MVGVAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQVAAE 138
Query: 243 YCAALPIGS 251
YC A + S
Sbjct: 139 YCRACRLKS 147
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 7/93 (7%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQ 67
D++G+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q +
Sbjct: 82 DMVGVAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQVAA 137
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
YC A L++ GG P + +++G++
Sbjct: 138 EYCRA--CRLKSTCIYGGAPKGPQIRDLERGVE 168
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/132 (37%), Positives = 74/132 (56%), Gaps = 5/132 (3%)
Query: 121 QVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 180
Q + RR+ I V G + P +F P +++ + + +PT IQ QG P ALS
Sbjct: 6 QEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALS 65
Query: 181 GRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDI 239
G D++G+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q +
Sbjct: 66 GLDMVGVAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQV 121
Query: 240 IQYYCAALPIGS 251
YC A + S
Sbjct: 122 AAEYCRACRLKS 133
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 7/93 (7%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQ 67
D++G+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q +
Sbjct: 68 DMVGVAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQVAA 123
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
YC A L++ GG P + +++G++
Sbjct: 124 EYCRA--CRLKSTCIYGGAPKGPQIRDLERGVE 154
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 68/118 (57%), Gaps = 11/118 (9%)
Query: 124 DIIRRNLRILVEGDDVPPACCSFRLM----KLPESLVRALEAKGIKKPTPIQVQGIPAAL 179
+ +R +I V+G D+P +F+ + K+ L++ + G + PTPIQ+Q IP L
Sbjct: 5 NFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVML 64
Query: 180 SGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
GR+++ A TGSGKTL F +PILM + K P +G LII P+RELA Q H
Sbjct: 65 HGRELLASAPTGSGKTLAFSIPILM-----QLKQP--ANKGFRALIISPTRELASQIH 115
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 7/58 (12%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 63
+ R+++ A TGSGKTL F +PILM + K P +G LII P+RELA Q H
Sbjct: 65 HGRELLASAPTGSGKTLAFSIPILM-----QLKQP--ANKGFRALIISPTRELASQIH 115
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 62/107 (57%), Gaps = 8/107 (7%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+F+ + + + L A + G KPT IQ++ IP AL GRDIIG+A TGSGKT F LPIL
Sbjct: 44 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 103
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIGS 251
LE +L + L++ P+RELA Q + + +++ + S
Sbjct: 104 ALLETPQRL--------FALVLTPTRELAFQISEQFEALGSSIGVQS 142
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 11/91 (12%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RDIIG+A TGSGKT F LPIL LE +L + L++ P+RELA Q + Q
Sbjct: 81 RDIIGLAETGSGKTGAFALPILNALLETPQRL--------FALVLTPTRELAFQISE--Q 130
Query: 68 YYCAALPIPLRTCLAIGGV-PMNQSLDVIKK 97
+ I +++ + +GG+ M+QSL + KK
Sbjct: 131 FEALGSSIGVQSAVIVGGIDSMSQSLALAKK 161
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 144 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPIL 203
F+ L ++ AL +G+ PTPIQ +P AL G+D+IG A TG+GKTL F LPI
Sbjct: 1 MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 204 MFCLEQETKLPFLPGEGPYGLIICPSRELARQ 235
+ + G P L++ P+RELA Q
Sbjct: 61 ERLAPSQER-----GRKPRALVLTPTRELALQ 87
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 14/134 (10%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+D+IG A TG+GKTL F LPI + + G P L++ P+RELA Q
Sbjct: 37 EGKDLIGQARTGTGKTLAFALPIAERLAPSQER-----GRKPRALVLTPTRELALQ---- 87
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDI 125
+ A+ L+ GG + + + +G + + T RA + L V D+
Sbjct: 88 VASELTAVAPHLKVVAVYGGTGYGKQKEALLRGA--DAVVATPGRA---LDYLRQGVLDL 142
Query: 126 IRRNLRILVEGDDV 139
R + +L E D++
Sbjct: 143 SRVEVAVLDEADEM 156
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 122 VHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSG 181
+H N+ + V G DVP F L + ++ + G K PTPIQ IP SG
Sbjct: 34 IHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSG 93
Query: 182 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQ 235
RD++ A TGSGKT F+LPIL LE +L P +I+ P+RELA Q
Sbjct: 94 RDLMACAQTGSGKTAAFLLPILSKLLEDPHELEL---GRPQVVIVSPTRELAIQ 144
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 18/125 (14%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD++ A TGSGKT F+LPIL LE +L P +I+ P+RELA
Sbjct: 92 SGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELEL---GRPQVVIVSPTRELA------ 142
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDI 125
IQ + A + L IG ++ G + + R +++ P ++ D
Sbjct: 143 IQIFNEARKFAFESYLKIG---------IVYGGTSFRHQNECITRGCHVVIATPGRLLDF 193
Query: 126 IRRNL 130
+ R
Sbjct: 194 VDRTF 198
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 5/92 (5%)
Query: 144 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPIL 203
F+ L ++ AL +G+ PTPI+ +P AL G+D+IG A TG+GKTL F LPI
Sbjct: 1 MEFKDFPLKPEILEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 204 MFCLEQETKLPFLPGEGPYGLIICPSRELARQ 235
+ + G P L++ P+RELA Q
Sbjct: 61 ERLAPSQER-----GRKPRALVLTPTRELALQ 87
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 14/134 (10%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+D+IG A TG+GKTL F LPI + + G P L++ P+RELA Q
Sbjct: 37 EGKDLIGQARTGTGKTLAFALPIAERLAPSQER-----GRKPRALVLTPTRELALQ---- 87
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDI 125
+ A+ L+ GG + + + +G + + T RA + L V D+
Sbjct: 88 VASELTAVAPHLKVVAVYGGTGYGKQKEALLRGA--DAVVATPGRA---LDYLRQGVLDL 142
Query: 126 IRRNLRILVEGDDV 139
R + +L E D++
Sbjct: 143 SRVEVAVLDEADEM 156
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 10/106 (9%)
Query: 151 LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQE 210
L + ++ L+ + T IQ Q I AL G+D++G A TGSGKTL F++P+ LE
Sbjct: 32 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPV----LEAL 87
Query: 211 TKLPFLPGEGPYGLIICPSRELARQTHDIIQY------YCAALPIG 250
+L + +G LII P+RELA QT ++++ + A L IG
Sbjct: 88 YRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIG 133
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 4/60 (6%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
+D++G A TGSGKTL F++P+ LE +L + +G LII P+RELA QT ++++
Sbjct: 63 KDVLGAAKTGSGKTLAFLVPV----LEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLR 118
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 53/89 (59%), Gaps = 4/89 (4%)
Query: 153 ESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETK 212
E+ ++A++ G T IQ + I L GRD++ A TGSGKTL F++P +E K
Sbjct: 63 ENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIP----AVELIVK 118
Query: 213 LPFLPGEGPYGLIICPSRELARQTHDIIQ 241
L F+P G LI+ P+RELA QT +++
Sbjct: 119 LRFMPRNGTGVLILSPTRELAMQTFGVLK 147
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD++ A TGSGKTL F++P +E KL F+P G LI+ P+RELA QT +++
Sbjct: 92 RDLLAAAKTGSGKTLAFLIP----AVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLK 147
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 135 EGDDV-PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSG 193
+ DDV +F L L+ + G +KP+PIQ + IP A++GRDI+ A G+G
Sbjct: 11 QTDDVLNTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTG 70
Query: 194 KTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241
KT FV+P L + K+ LI+ P+RELA QT +++
Sbjct: 71 KTAAFVIPTLEKVKPKLNKIQ--------ALIMVPTRELALQTSQVVR 110
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 73/178 (41%), Gaps = 25/178 (14%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RDI+ A G+GKT FV+P L + K+ LI+ P+RELA QT +++
Sbjct: 59 RDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQ--------ALIMVPTRELALQTSQVVR 110
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWR----APR-------CIL 116
I +C+ G N D+++ + + T R A R C L
Sbjct: 111 TLGKHCGI---SCMVTTG-GTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSL 166
Query: 117 SLPDQVHDIIRRNLRILVEG--DDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQV 172
+ D+ ++ R+ + ++E +PP S V+ K + KP I +
Sbjct: 167 FIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINL 224
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 8/96 (8%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
SF M L ESL+R + A G +KP+ IQ + I + G D+I A +G+GKT F + IL
Sbjct: 15 SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISIL- 73
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 240
Q+ +L + L++ P+RELA+Q ++
Sbjct: 74 ----QQIELDL---KATQALVLAPTRELAQQIQKVV 102
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 22/120 (18%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 68
D+I A +G+GKT F + IL Q+ +L + L++ P+RELA+Q ++
Sbjct: 53 DVIAQAQSGTGKTATFAISIL-----QQIELDL---KATQALVLAPTRELAQQIQKVVMA 104
Query: 69 YCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRR 128
+ C IGG ++ +Q K AP I+ P +V D++ R
Sbjct: 105 LGDYMGASCHAC--IGGTN-------VRAEVQ-----KLQMEAPHIIVGTPGRVFDMLNR 150
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 8/96 (8%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
SF M L ESL+R + A G +KP+ IQ + I + G D+I A +G+GKT F + IL
Sbjct: 41 SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISIL- 99
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 240
Q+ +L + L++ P+RELA+Q ++
Sbjct: 100 ----QQIELDL---KATQALVLAPTRELAQQIQKVV 128
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 22/120 (18%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 68
D+I A +G+GKT F + IL Q+ +L + L++ P+RELA+Q ++
Sbjct: 79 DVIAQAQSGTGKTATFAISIL-----QQIELDL---KATQALVLAPTRELAQQIQKVVMA 130
Query: 69 YCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRR 128
+ C IGG ++ +Q K AP I+ P +V D++ R
Sbjct: 131 LGDYMGASCHAC--IGGTN-------VRAEVQ-----KLQMEAPHIIVGTPGRVFDMLNR 176
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 8/96 (8%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+F M L ESL+R + A G +KP+ IQ + I + G D+I A +G+GKT F + IL
Sbjct: 31 NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISIL- 89
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 240
Q+ ++ F + L++ P+RELA+Q +I
Sbjct: 90 ----QQLEIEFKETQ---ALVLAPTRELAQQIQKVI 118
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 22/120 (18%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 68
D+I A +G+GKT F + IL Q+ ++ F + L++ P+RELA+Q +I
Sbjct: 69 DVIAQAQSGTGKTATFAISIL-----QQLEIEFKETQ---ALVLAPTRELAQQIQKVILA 120
Query: 69 YCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRR 128
+ C IGG + N+ K AP ++ P +V D++ R
Sbjct: 121 LGDYMGATCHAC--IGGTNVR------------NEMQKLQAEAPHIVVGTPGRVFDMLNR 166
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+F +KL ++ + ++PTPIQ IPA L RDI+ A TGSGKT F++PI+
Sbjct: 24 NFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIIN 83
Query: 205 FCLEQE-TKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIGS 251
+ Q+ + + P LI+ P+RELA Q Q + P+ S
Sbjct: 84 HLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRS 131
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQE-TKLPFLPGEGPYGLIICPSRELARQTHDII 66
RDI+ A TGSGKT F++PI+ + Q+ + + P LI+ P+RELA Q
Sbjct: 61 RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120
Query: 67 QYYCAALPIPLRTCLAIGGVPMNQSLDVIKKG 98
Q + +L PLR+C+ GG + + ++ G
Sbjct: 121 QKF--SLNTPLRSCVVYGGADTHSQIREVQMG 150
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 136 GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKT 195
G++ PP SF +++ E ++ +E +PTP+Q IP RD++ A TGSGKT
Sbjct: 7 GNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 66
Query: 196 LVFVLPIL--MFCLEQETKLPFLPGEGPYG--------LIICPSRELARQTHD 238
F+LPIL ++ L + G YG L++ P+RELA Q ++
Sbjct: 67 AAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYE 119
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 12/104 (11%)
Query: 5 RNSRDIIGIAFTGSGKTLVFVLPIL--MFCLEQETKLPFLPGEGPYG--------LIICP 54
+ RD++ A TGSGKT F+LPIL ++ L + G YG L++ P
Sbjct: 50 KEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAP 109
Query: 55 SRELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKG 98
+RELA Q ++ + + + R C+ GG + Q + +++G
Sbjct: 110 TRELAVQIYEEARKFSYRSRV--RPCVVYGGADIGQQIRDLERG 151
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 54/98 (55%), Gaps = 11/98 (11%)
Query: 138 DVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLV 197
DV P +F M L E L+R + A G +KP+ IQ + I + GRD+I + +G+GKT
Sbjct: 35 DVTP---TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTAT 91
Query: 198 FVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQ 235
F + +L CL+ + + LI+ P+RELA Q
Sbjct: 92 FSISVLQ-CLDIQVR-------ETQALILAPTRELAVQ 121
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 23/121 (19%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD+I + +G+GKT F + +L CL+ + + LI+ P+RELA Q +
Sbjct: 76 RDVIAQSQSGTGKTATFSISVLQ-CLDIQVR-------ETQALILAPTRELAVQIQKGLL 127
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIR 127
+ + C IGG + + + + G + P +V D+IR
Sbjct: 128 ALGDYMNVQCHAC--IGGTNVGEDIRKLDYG-------------QHVVAGTPGRVFDMIR 172
Query: 128 R 128
R
Sbjct: 173 R 173
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 54/98 (55%), Gaps = 11/98 (11%)
Query: 138 DVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLV 197
DV P +F M L E L+R + A G +KP+ IQ + I + GRD+I + +G+GKT
Sbjct: 35 DVTP---TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTAT 91
Query: 198 FVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQ 235
F + +L CL+ + + LI+ P+RELA Q
Sbjct: 92 FSISVLQ-CLDIQVR-------ETQALILAPTRELAVQ 121
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 23/121 (19%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD+I + +G+GKT F + +L CL+ + + LI+ P+RELA Q +
Sbjct: 76 RDVIAQSQSGTGKTATFSISVLQ-CLDIQVR-------ETQALILAPTRELAVQIQKGLL 127
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIR 127
+ + C IGG + + + + G + P +V D+IR
Sbjct: 128 ALGDYMNVQCHAC--IGGTNVGEDIRKLDYG-------------QHVVAGTPGRVFDMIR 172
Query: 128 R 128
R
Sbjct: 173 R 173
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 54/98 (55%), Gaps = 11/98 (11%)
Query: 138 DVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLV 197
DV P +F M L E L+R + A G +KP+ IQ + I + GRD+I + +G+GKT
Sbjct: 34 DVTP---TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTAT 90
Query: 198 FVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQ 235
F + +L CL+ + + LI+ P+RELA Q
Sbjct: 91 FSISVLQ-CLDIQVR-------ETQALILAPTRELAVQ 120
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 23/121 (19%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD+I + +G+GKT F + +L CL+ + + LI+ P+RELA Q +
Sbjct: 75 RDVIAQSQSGTGKTATFSISVLQ-CLDIQVR-------ETQALILAPTRELAVQIQKGLL 126
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIR 127
+ + C IGG + + + + G + P +V D+IR
Sbjct: 127 ALGDYMNVQCHAC--IGGTNVGEDIRKLDYG-------------QHVVAGTPGRVFDMIR 171
Query: 128 R 128
R
Sbjct: 172 R 172
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 54/98 (55%), Gaps = 11/98 (11%)
Query: 138 DVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLV 197
DV P +F M L E L+R + A G +KP+ IQ + I + GRD+I + +G+GKT
Sbjct: 13 DVTP---TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTAT 69
Query: 198 FVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQ 235
F + +L CL+ + + LI+ P+RELA Q
Sbjct: 70 FSISVLQ-CLDIQVR-------ETQALILAPTRELAVQ 99
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 23/121 (19%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD+I + +G+GKT F + +L CL+ + + LI+ P+RELA Q +
Sbjct: 54 RDVIAQSQSGTGKTATFSISVLQ-CLDIQVR-------ETQALILAPTRELAVQIQKGLL 105
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIR 127
+ + C IGG + + + + G + P +V D+IR
Sbjct: 106 ALGDYMNVQCHAC--IGGTNVGEDIRKLDYG-------------QHVVAGTPGRVFDMIR 150
Query: 128 R 128
R
Sbjct: 151 R 151
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 8/93 (8%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+F M L E L+R + A G +KP+ IQ + I + GRD+I + +G+GKT F + +L
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
CL+ + + LI+ P+RELA Q
Sbjct: 62 -CLDIQVR-------ETQALILAPTRELAVQVQ 86
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 23/121 (19%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD+I + +G+GKT F + +L CL+ + + LI+ P+RELA Q +
Sbjct: 39 RDVIAQSQSGTGKTATFSVSVLQ-CLDIQVR-------ETQALILAPTRELAVQVQKGLL 90
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIR 127
+ + C IGG + + + + G + P +V D+IR
Sbjct: 91 ALGDYMNVQCHAC--IGGTNVGEDIRKLDYG-------------QHVVAGTPGRVFDMIR 135
Query: 128 R 128
R
Sbjct: 136 R 136
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 8/93 (8%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+F M L E L+R + A G +KP+ IQ + I + GRD+I + +G+GKT F + +L
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
CL+ + + LI+ P+RELA Q
Sbjct: 62 -CLDIQVR-------ETQALILAPTRELAVQVQ 86
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 23/121 (19%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD+I + +G+GKT F + +L CL+ + + LI+ P+RELA Q +
Sbjct: 39 RDVIAQSQSGTGKTATFSVSVLQ-CLDIQVR-------ETQALILAPTRELAVQVQKGLL 90
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIR 127
+ + C IGG + + + + G + P +V D+IR
Sbjct: 91 ALGDYMNVQSHAC--IGGTNVGEDIRKLDYG-------------QHVVAGTPGRVFDMIR 135
Query: 128 R 128
R
Sbjct: 136 R 136
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 10/98 (10%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGR-DIIGIAFTGSGKTLVFVLPIL 203
+F + L ++++ A+ KG +KPT IQ + IP L+ +I+ A TGSGKT F +P++
Sbjct: 7 NFNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66
Query: 204 MFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241
E G +I+ P+RELA Q D I+
Sbjct: 67 ELVNEN---------NGIEAIILTPTRELAIQVADEIE 95
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
+I+ A TGSGKT F +P++ E G +I+ P+RELA Q D I+
Sbjct: 46 NIVAQARTGSGKTASFAIPLIELVNEN---------NGIEAIILTPTRELAIQVADEIE 95
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
SF M L ESL+R + A G + P+ IQ + I + G D+I A +G+G T F + IL
Sbjct: 16 SFDDMNLSESLLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXTATFAISIL- 74
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 240
Q+ +L + L++ P+RELA+Q ++
Sbjct: 75 ----QQIELDLXATQ---ALVLAPTRELAQQIQXVV 103
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 22/120 (18%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 68
D+I A +G+G T F + IL Q+ +L + L++ P+RELA+Q ++
Sbjct: 54 DVIAQAQSGTGXTATFAISIL-----QQIELDLXATQA---LVLAPTRELAQQIQXVVMA 105
Query: 69 YCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRR 128
+ C IGG + + ++ AP I+ P +V D++ R
Sbjct: 106 LGDYMGASCHAC--IGGTNVRAEVQXLQ------------MEAPHIIVGTPGRVFDMLNR 151
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Query: 139 VPPACCSFR--LMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTL 196
+P C F+ + P+ L++++ GI KPTPIQ Q P L G D+I +A TG+GKTL
Sbjct: 14 IPKPTCRFKDAFQQYPD-LLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTL 72
Query: 197 VFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELA 233
+++P + Q + GP L++ P+RELA
Sbjct: 73 SYLMPGFIHLDSQP--ISREQRNGPGMLVLTPTRELA 107
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 68
D+I +A TG+GKTL +++P + Q + GP L++ P+RELA ++
Sbjct: 59 DLIVVAQTGTGKTLSYLMPGFIHLDSQP--ISREQRNGPGMLVLTPTRELALH----VEA 112
Query: 69 YCAALPIP-LRTCLAIGGVPMNQSLDVIKKGI 99
C+ L++ GG N ++ I KG+
Sbjct: 113 ECSKYSYKGLKSICIYGGRNRNGQIEDISKGV 144
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
Query: 151 LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQE 210
L L+ + G +KP+PIQ + IP ALSGRDI+ A G+GK+ +++P+L
Sbjct: 10 LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL------- 62
Query: 211 TKLPFLPGEGPYGLIICPSRELARQTHDI 239
+L L + ++I P+RELA Q I
Sbjct: 63 ERLD-LKKDNIQAMVIVPTRELALQVSQI 90
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RDI+ A G+GK+ +++P+L +L L + ++I P+RELA Q I
Sbjct: 39 SGRDILARAKNGTGKSGAYLIPLL-------ERLD-LKKDNIQAMVIVPTRELALQVSQI 90
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 14/85 (16%)
Query: 151 LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQE 210
+ E + +A+ G K T +Q + IP L G++++ A TGSGKT + +PIL
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----- 55
Query: 211 TKLPFLPGEGPYGLIICPSRELARQ 235
G L++ P+REL RQ
Sbjct: 56 ---------GMKSLVVTPTRELTRQ 71
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 24/95 (25%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT----H 63
++++ A TGSGKT + +PIL G L++ P+REL RQ
Sbjct: 32 KNVVVRAKTGSGKTAAYAIPILEL--------------GMKSLVVTPTRELTRQVASHIR 77
Query: 64 DIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKG 98
DI +Y + + GG+P ++ ++
Sbjct: 78 DIGRY------MDTKVAEVYGGMPYKAQINRVRNA 106
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 134 VEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSG 193
V+G V FR L L+RA+ G + P+ +Q + IP A+ G D++ A +G G
Sbjct: 4 VKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMG 63
Query: 194 KTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALP 248
KT VFVL L +L + G+ L++C +RELA Q + + +P
Sbjct: 64 KTAVFVLATL-------QQLEPVTGQVSV-LVMCHTRELAFQISKEYERFSKYMP 110
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 68
D++ A +G GKT VFVL L +L + G+ L++C +RELA Q +
Sbjct: 53 DVLCQAKSGMGKTAVFVLATL-------QQLEPVTGQVSV-LVMCHTRELAFQISKEYER 104
Query: 69 YCAALPIPLRTCLAIGGVPMNQSLDVIKKG 98
+ +P ++ + GG+ + + +V+KK
Sbjct: 105 FSKYMP-NVKVAVFFGGLSIKKDEEVLKKN 133
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 10/102 (9%)
Query: 142 ACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSG--RDIIGIAFTGSGKTLVFV 199
+ SF + L L++ + A +KP+ IQ + +P L R++I + +G+GKT F
Sbjct: 20 SAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFS 79
Query: 200 LPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241
L +L ++ P + + PSRELARQT +++Q
Sbjct: 80 LTMLTRVNPEDA--------SPQAICLAPSRELARQTLEVVQ 113
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 27/123 (21%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
R++I + +G+GKT F L +L ++ P + + PSRELARQT +++Q
Sbjct: 62 RNMIAQSQSGTGKTAAFSLTMLTRVNPEDA--------SPQAICLAPSRELARQTLEVVQ 113
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIR 127
I + VP D +K Q N + I+ P V D++R
Sbjct: 114 EMGKFTKITSQLI-----VP-----DSFEKNKQIN---------AQVIVGTPGTVLDLMR 154
Query: 128 RNL 130
R L
Sbjct: 155 RKL 157
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 12/107 (11%)
Query: 136 GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKT 195
GD + F + L ++ L A G ++P+P+Q++ IP G D+I A +G+GKT
Sbjct: 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKT 75
Query: 196 LVF-VLPILMFCLEQ-ETKLPFLPGEGPYGLIICPSRELARQTHDII 240
VF + + LE T++ LI+ P+RE+A Q H +I
Sbjct: 76 CVFSTIALDSLVLENLSTQI----------LILAPTREIAVQIHSVI 112
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 13/91 (14%)
Query: 9 DIIGIAFTGSGKTLVF-VLPILMFCLEQ-ETKLPFLPGEGPYGLIICPSRELARQTHDII 66
D+I A +G+GKT VF + + LE T++ LI+ P+RE+A Q H +I
Sbjct: 63 DLIVQAKSGTGKTCVFSTIALDSLVLENLSTQI----------LILAPTREIAVQIHSVI 112
Query: 67 QYYCAALPIPLRTCLAIGGVPMNQSLDVIKK 97
+ L + IGG P++Q +KK
Sbjct: 113 TAIGIKME-GLECHVFIGGTPLSQDKTRLKK 142
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSG--RDIIGIAFTGSGKTLVFVLPI 202
SF + L L++ + A +KP+ IQ + +P L R++I + +G+GKT F L +
Sbjct: 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65
Query: 203 LMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241
L ++ P + + PSRELARQT +++Q
Sbjct: 66 LTRVNPEDA--------SPQAICLAPSRELARQTLEVVQ 96
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 27/123 (21%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
R++I + +G+GKT F L +L ++ P + + PSRELARQT +++Q
Sbjct: 45 RNMIAQSQSGTGKTAAFSLTMLTRVNPEDA--------SPQAICLAPSRELARQTLEVVQ 96
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIR 127
I + VP D +K Q N + I+ P V D++R
Sbjct: 97 EMGKFTKITSQLI-----VP-----DSFEKNKQIN---------AQVIVGTPGTVLDLMR 137
Query: 128 RNL 130
R L
Sbjct: 138 RKL 140
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSG--RDIIGIAFTGSGKTLVFVLPI 202
SF + L L++ + A +KP+ IQ + +P L R++I + +G+GKT F L +
Sbjct: 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65
Query: 203 LMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241
L ++ P + + PSRELARQT +++Q
Sbjct: 66 LTRVNPEDA--------SPQAICLAPSRELARQTLEVVQ 96
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 27/123 (21%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
R++I + +G+GKT F L +L ++ P + + PSRELARQT +++Q
Sbjct: 45 RNMIAQSQSGTGKTAAFSLTMLTRVNPEDA--------SPQAICLAPSRELARQTLEVVQ 96
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIR 127
I + VP D +K Q N + I+ P V D++R
Sbjct: 97 EMGKFTKITSQLI-----VP-----DSFEKNKQIN---------AQVIVGTPGTVLDLMR 137
Query: 128 RNL 130
R L
Sbjct: 138 RKL 140
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
F M+L E+L+R + G ++P+ IQ + I + G D++ A +G+GKT F + L
Sbjct: 24 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 83
Query: 206 CLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 240
+T + + P L++ P+RELA Q ++
Sbjct: 84 I---DTSV-----KAPQALMLAPTRELALQIQKVV 110
Score = 33.9 bits (76), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 32/140 (22%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
D++ A +G+GKT F + L +T + + P L++ P+RELA Q ++
Sbjct: 60 HDVLAQAQSGTGKTGTFSIAALQRI---DTSV-----KAPQALMLAPTRELALQIQKVVM 111
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDII- 126
+ I + C IGG + + R + ++ P +V D I
Sbjct: 112 ALAFHMDIKVHAC--IGGTSFVEDAE--------------GLRDAQIVVGTPGRVFDNIQ 155
Query: 127 RRNLR-------ILVEGDDV 139
RR R IL E D++
Sbjct: 156 RRRFRTDKIKMFILDEADEM 175
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 140 PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFV 199
P FR L L+RA+ G + P+ +Q + IP A+ G D++ A +G GKT VFV
Sbjct: 3 PGHMSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 62
Query: 200 LPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALP 248
L L +L + G+ L++C +RELA Q + + +P
Sbjct: 63 LATL-------QQLEPVTGQVSV-LVMCHTRELAFQISKEYERFSKYMP 103
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 68
D++ A +G GKT VFVL L +L + G+ L++C +RELA Q +
Sbjct: 46 DVLCQAKSGMGKTAVFVLATL-------QQLEPVTGQVSV-LVMCHTRELAFQISKEYER 97
Query: 69 YCAALPIPLRTCLAIGGVPMNQSLDVIKKG 98
+ +P ++ + GG+ + + +V+KK
Sbjct: 98 FSKYMP-NVKVAVFFGGLSIKKDEEVLKKN 126
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
F M+L E+L+R + G ++P+ IQ + I + G D++ A +G+GKT F + L
Sbjct: 15 KFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 74
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 240
+T + + P L++ P+RELA Q ++
Sbjct: 75 RI---DTSV-----KAPQALMLAPTRELALQIQKVV 102
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 32/140 (22%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
D++ A +G+GKT F + L +T + + P L++ P+RELA Q ++
Sbjct: 52 HDVLAQAQSGTGKTGTFSIAALQRI---DTSV-----KAPQALMLAPTRELALQIQKVVM 103
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDII- 126
+ I + C IGG + + R + ++ P +V D I
Sbjct: 104 ALAFHMDIKVHAC--IGGTSFVEDAE--------------GLRDAQIVVGTPGRVFDNIQ 147
Query: 127 RRNLR-------ILVEGDDV 139
RR R IL E D++
Sbjct: 148 RRRFRTDKIKMFILDEADEM 167
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
F M+L E L+R + G ++P+ IQ + I + G D++ A +G+GKT F + L
Sbjct: 23 FDDMELDEQLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 82
Query: 206 CLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 240
+T + + P L++ P+RELA Q ++
Sbjct: 83 I---DTSV-----KAPQALMLAPTRELALQIQKVV 109
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 57/140 (40%), Gaps = 32/140 (22%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
D++ A +G+GKT F + L +T + + P L++ P+RELA Q ++
Sbjct: 59 HDVLAQAQSGTGKTGTFSIAALQRI---DTSV-----KAPQALMLAPTRELALQIQKVVM 110
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDII- 126
+ I + C IGG + + R + ++ P +V D I
Sbjct: 111 ALAFHMDIKVHAC--IGGTSFVEDAE--------------GLRDAQIVVGTPGRVFDNIQ 154
Query: 127 RRNLR-------ILVEGDDV 139
RR R IL E D++
Sbjct: 155 RRRFRTDKIKMFILDEADEM 174
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
FR L L+RA+ G + P+ +Q + IP A+ G D++ A +G GKT VFVL L
Sbjct: 10 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL-- 67
Query: 206 CLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALP 248
+L + G+ L++C +RELA Q + + +P
Sbjct: 68 -----QQLEPVTGQVSV-LVMCHTRELAFQISKEYERFSKYMP 104
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 68
D++ A +G GKT VFVL L +L + G+ L++C +RELA Q +
Sbjct: 47 DVLCQAKSGMGKTAVFVLATL-------QQLEPVTGQVSV-LVMCHTRELAFQISKEYER 98
Query: 69 YCAALPIPLRTCLAIGGVPMNQSLDVIKKG 98
+ +P ++ + GG+ + + +V+KK
Sbjct: 99 FSKYMP-NVKVAVFFGGLSIKKDEEVLKKN 127
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
FR L L+RA+ G + P+ +Q + IP A+ G D++ A +G GKT VFVL L
Sbjct: 10 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL-- 67
Query: 206 CLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALP 248
+L + G+ L++C +RELA Q + + +P
Sbjct: 68 -----QQLEPVTGQVSV-LVMCHTRELAFQISKEYERFSKYMP 104
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 9/90 (10%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 68
D++ A +G GKT VFVL L +L + G+ L++C +RELA Q +
Sbjct: 47 DVLCQAKSGMGKTAVFVLATL-------QQLEPVTGQVSV-LVMCHTRELAFQISKEYER 98
Query: 69 YCAALPIPLRTCLAIGGVPMNQSLDVIKKG 98
+ +P ++ + GG+ + + +V+KK
Sbjct: 99 FSKYMP-NVKVAVFFGGLSIKKDEEVLKKN 127
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
F +L E+L+R + G ++P+ IQ + I + G D++ A +G+GKT F + L
Sbjct: 23 FDDXELDENLLRGVFGYGFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTFSIAALQR 82
Query: 206 CLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 240
+T + + P L + P+RELA Q ++
Sbjct: 83 I---DTSV-----KAPQALXLAPTRELALQIQKVV 109
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 24/121 (19%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
D++ A +G+GKT F + L +T + + P L + P+RELA Q ++
Sbjct: 59 HDVLAQAQSGTGKTGTFSIAALQRI---DTSV-----KAPQALXLAPTRELALQIQKVVX 110
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIR 127
I + C IGG + + R + ++ P +V D I+
Sbjct: 111 ALAFHXDIKVHAC--IGGTSFVEDAE--------------GLRDAQIVVGTPGRVFDNIQ 154
Query: 128 R 128
R
Sbjct: 155 R 155
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 155 LVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLP 214
++ A++ KPT IQ + IP AL G +G + TG+GKT ++LPI + ++
Sbjct: 15 IIEAIKTLRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLPIXEKIKPERAEV- 73
Query: 215 FLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIGSF 252
+I P+RELA Q Y L I F
Sbjct: 74 -------QAVITAPTRELA------TQIYHETLKITKF 98
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 25/122 (20%)
Query: 11 IGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT-HDI--IQ 67
+G + TG+GKT ++LPI + ++ +I P+RELA Q H+ I
Sbjct: 45 VGQSQTGTGKTHAYLLPIXEKIKPERAEV--------QAVITAPTRELATQIYHETLKIT 96
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIR 127
+C + CL IGG ++L+ K +Q P ++ P +++D IR
Sbjct: 97 KFCPKDRXIVARCL-IGGTDKQKALE--KLNVQ-----------PHIVIGTPGRINDFIR 142
Query: 128 RN 129
Sbjct: 143 EQ 144
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSG--RDIIGIAFTGSGKTLVFVLPI 202
SF ++L L++ + A G +P+ IQ +P L+ +++I + +G+GKT FVL +
Sbjct: 26 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 85
Query: 203 LMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241
L +E K P L + P+ ELA QT +I+
Sbjct: 86 LS-QVEPANKY-------PQCLCLSPTYELALQTGKVIE 116
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 17/97 (17%)
Query: 168 TPIQVQGIPAALSG--RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLI 225
TP+Q + I LS D+I A TG+GKT F++PI + + ++ +I
Sbjct: 45 TPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVK----AVI 100
Query: 226 ICPSRELA-------RQTHD----IIQYYCAALPIGS 251
+ P+R+LA ++ HD + +Y C +L G+
Sbjct: 101 VAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGT 137
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 24/100 (24%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELA-------RQ 61
D+I A TG+GKT F++PI + + ++ +I+ P+R+LA ++
Sbjct: 62 DVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVK----AVIVAPTRDLALQIEAEVKK 117
Query: 62 THD----IIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKK 97
HD + +Y C +L +GG +++ + K
Sbjct: 118 IHDMNYGLKKYACVSL---------VGGTDFRAAMNKMNK 148
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSG--RDIIGIAFTGSGKTLVFVLPI 202
SF ++L L++ + A G +P+ IQ +P L+ +++I + +G+GKT FVL +
Sbjct: 93 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 152
Query: 203 LMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241
L +E K P L + P+ ELA QT +I+
Sbjct: 153 LS-QVEPANKY-------PQCLCLSPTYELALQTGKVIE 183
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSG--RDIIGIAFTGSGKTLVFVLPI 202
SF ++L L++ + A G +P+ IQ +P L+ +++I + +G+GKT FVL +
Sbjct: 26 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 85
Query: 203 LMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241
L +E K P L + P+ ELA QT +I+
Sbjct: 86 LS-QVEPANKY-------PQCLCLSPTYELALQTGKVIE 116
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSG--RDIIGIAFTGSGKTLVFVLPI 202
SF ++L L++ + A G +P+ IQ +P L+ +++I + +G+GKT FVL +
Sbjct: 63 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 122
Query: 203 LMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241
L +E K P L + P+ ELA QT +I+
Sbjct: 123 LS-QVEPANKY-------PQCLCLSPTYELALQTGKVIE 153
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSG--RDIIGIAFTGSGKTLVFVLPI 202
SF ++L L++ + A G +P+ IQ +P L+ +++I + +G+GKT FVL +
Sbjct: 42 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 101
Query: 203 LMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241
L +E K P L + P+ ELA QT +I+
Sbjct: 102 LS-QVEPANKY-------PQCLCLSPTYELALQTGKVIE 132
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSG--RDIIGIAFTGSGKTLVFVLPI 202
SF ++L L++ + A G +P+ IQ +P L+ +++I + +G+GKT FVL +
Sbjct: 93 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 152
Query: 203 LMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241
L +E K P L + P+ ELA QT +I+
Sbjct: 153 LS-QVEPANKY-------PQCLCLSPTYELALQTGKVIE 183
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 17/97 (17%)
Query: 168 TPIQVQGIPAALSG--RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLI 225
TP+Q + I LS D+I A TG+GKT F++PI + + ++ +I
Sbjct: 96 TPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVK----AVI 151
Query: 226 ICPSRELA-------RQTHD----IIQYYCAALPIGS 251
+ P+R+LA ++ HD + +Y C +L G+
Sbjct: 152 VAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGT 188
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 24/102 (23%)
Query: 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELA------- 59
D+I A TG+GKT F++PI + + ++ +I+ P+R+LA
Sbjct: 111 DHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVK----AVIVAPTRDLALQIEAEV 166
Query: 60 RQTHD----IIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKK 97
++ HD + +Y C +L +GG +++ + K
Sbjct: 167 KKIHDMNYGLKKYACVSL---------VGGTDFRAAMNKMNK 199
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 17/97 (17%)
Query: 168 TPIQVQGIPAALSG--RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLI 225
TP+Q + I LS D+I A TG+GKT F++PI + + ++ +I
Sbjct: 45 TPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVK----AVI 100
Query: 226 ICPSRELA-------RQTHD----IIQYYCAALPIGS 251
+ P+R+LA ++ HD + +Y C +L G+
Sbjct: 101 VAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGT 137
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 24/102 (23%)
Query: 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELA------- 59
D+I A TG+GKT F++PI + + ++ +I+ P+R+LA
Sbjct: 60 DHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVK----AVIVAPTRDLALQIEAEV 115
Query: 60 RQTHD----IIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKK 97
++ HD + +Y C +L +GG +++ + K
Sbjct: 116 KKIHDMNYGLKKYACVSL---------VGGTDFRAAMNKMNK 148
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 10/73 (13%)
Query: 170 IQVQGIPAALSG--RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIIC 227
IQ + +P LS R++IG + +G+GKT F L +L + +P P + +
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRV---DASVP-----KPQAICLA 196
Query: 228 PSRELARQTHDII 240
PSRELARQ D++
Sbjct: 197 PSRELARQIMDVV 209
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 66
R++IG + +G+GKT F L +L + +P P + + PSRELARQ D++
Sbjct: 159 RNMIGQSQSGTGKTAAFALTMLSRV---DASVP-----KPQAICLAPSRELARQIMDVV 209
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 149 MKLPESLVRALEAKGIKKPTPIQVQGIPAA-LSGRDIIGIAFTGSGKTLVFVLPILMFCL 207
+KLP +++ ++ +GIKK P Q + + L G ++ + TGSGKTL+ + I+ F L
Sbjct: 13 LKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLL 72
Query: 208 EQETKLPFLPGEGPYGLIICPSRELARQTH 237
+ G + + P R L + +
Sbjct: 73 KN----------GGKAIYVTPLRALTNEKY 92
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 160 EAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
E G ++ P Q + I LSGRD + + TG GK+L + +P L+
Sbjct: 19 ETFGYQQFRPGQEEIIDTVLSGRDCLVVXPTGGGKSLCYQIPALLL 64
>pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
Length = 936
Score = 32.3 bits (72), Expect = 0.29, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 11/59 (18%)
Query: 151 LPESLVRALEAKGIKKPTPI---------QVQGIPAALSGRDIIGIAFTGSGKTLVFVL 200
L E+L A A+GI KP P+ Q++ A++G++ + A TGSGKT V +L
Sbjct: 226 LSENLGSA--AEGIGKPPPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSIL 282
>pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
Length = 797
Score = 32.3 bits (72), Expect = 0.29, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 11/59 (18%)
Query: 151 LPESLVRALEAKGIKKPTPI---------QVQGIPAALSGRDIIGIAFTGSGKTLVFVL 200
L E+L A A+GI KP P+ Q++ A++G++ + A TGSGKT V +L
Sbjct: 226 LSENLGSA--AEGIGKPPPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSIL 282
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 160 EAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
E G ++ P Q + I LSGRD + + TG GK+L + +P L+
Sbjct: 19 ETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL 64
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 26/40 (65%)
Query: 164 IKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPIL 203
++K P+Q++ I ++G+++ + TG GK+L + LP L
Sbjct: 42 LEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPAL 81
>pdb|2PHL|A Chain A, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|B Chain B, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|C Chain C, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|1PHS|A Chain A, The Three-Dimensional Structure Of The Seed Storage
Protein Phaseolin At 3 Angstroms Resolution
Length = 397
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 172 VQGIPAALSGRDIIGIAFTGSGKTLV 197
+ I AL G+D++G+ F+GSG ++
Sbjct: 341 ISSIGRALDGKDVLGLTFSGSGDEVM 366
>pdb|2I7T|A Chain A, Structure Of Human Cpsf-73
pdb|2I7V|A Chain A, Structure Of Human Cpsf-73
Length = 459
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 61 QTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPI 105
+ HDI YY ++L + C+A+ +N D I+K I N+P
Sbjct: 262 ELHDIPIYYASSLA---KKCMAVYQTYVNAMNDKIRKQININNPF 303
>pdb|3RR1|A Chain A, Crystal Structure Of Enolase Prk14017 (Target Efi-500653)
From Ralstonia Pickettii 12j
pdb|3RR1|B Chain B, Crystal Structure Of Enolase Prk14017 (Target Efi-500653)
From Ralstonia Pickettii 12j
pdb|3RRA|A Chain A, Crystal Structure Of Enolase Prk14017 (Target Efi-500653)
From Ralstonia Pickettii 12j With Magnesium Bound
pdb|3RRA|B Chain B, Crystal Structure Of Enolase Prk14017 (Target Efi-500653)
From Ralstonia Pickettii 12j With Magnesium Bound
Length = 405
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 17/114 (14%)
Query: 69 YCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRR 128
+C PI L CL + V N +L GI YN ++ D +R
Sbjct: 286 HCPLGPIALAACLHVDFVSWNATLQEQSMGIHYNKGA---------------ELLDYVRN 330
Query: 129 NLRILVEGDDVPPACCSFRLMKLPESLV--RALEAKGIKKPTPIQVQGIPAALS 180
+EG + P + + E+LV R+ EA + P G A +
Sbjct: 331 KADFALEGGYIRPPRLPGLGVDIDEALVIERSKEAPDWRNPVWRHADGSVAEWA 384
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 49/102 (48%), Gaps = 15/102 (14%)
Query: 146 FRLMKLPESL----VRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLP 201
++ +L ES+ V L+ +GI++ P Q + + SG++++ T +GKTL+ +
Sbjct: 1 MKVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMA 60
Query: 202 ILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243
++ + +G L + P R LA + ++ + +
Sbjct: 61 MVREAI-----------KGGKSLYVVPLRALAGEKYESFKKW 91
>pdb|1NKT|A Chain A, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis Complex With Adpbs
pdb|1NKT|B Chain B, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis Complex With Adpbs
pdb|1NL3|A Chain A, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis In Apo Form
pdb|1NL3|B Chain B, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis In Apo Form
Length = 922
Score = 27.7 bits (60), Expect = 5.9, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 151 LPESLVRALEAKGI---KKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCL 207
LPE+ A EA ++P +QV G A G + TG GKTL VLP + L
Sbjct: 93 LPEAFAVAREAAWRVLDQRPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNAL 150
>pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
Length = 556
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 161 AKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVL 200
A KK Q++ A++G++ + A TGSGKT V +L
Sbjct: 2 AMETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSIL 41
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.145 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,781,550
Number of Sequences: 62578
Number of extensions: 328958
Number of successful extensions: 1052
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 901
Number of HSP's gapped (non-prelim): 124
length of query: 252
length of database: 14,973,337
effective HSP length: 97
effective length of query: 155
effective length of database: 8,903,271
effective search space: 1380007005
effective search space used: 1380007005
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)