BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7786
(252 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UJV9|DDX41_HUMAN Probable ATP-dependent RNA helicase DDX41 OS=Homo sapiens GN=DDX41
PE=1 SV=2
Length = 622
Score = 218 bits (554), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 100/157 (63%), Positives = 123/157 (78%)
Query: 91 SLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMK 150
S+ + KGI Y+DPIKTSW PR +LS+ ++ H+ +R+ ILVEGD +PP SF+ MK
Sbjct: 128 SVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMK 187
Query: 151 LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQE 210
P +++R L+ KGI PTPIQ+QGIP LSGRD+IGIAFTGSGKTLVF LP++MFCLEQE
Sbjct: 188 FPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQE 247
Query: 211 TKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
+LPF EGPYGLIICPSRELARQTH I++YYC L
Sbjct: 248 KRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLL 284
Score = 127 bits (320), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 75/102 (73%), Gaps = 4/102 (3%)
Query: 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT 62
T + RD+IGIAFTGSGKTLVF LP++MFCLEQE +LPF EGPYGLIICPSRELARQT
Sbjct: 214 TILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQT 273
Query: 63 HDIIQYYCAALPIP----LRTCLAIGGVPMNQSLDVIKKGIQ 100
H I++YYC L LR L IGG+ + + ++ I+ G+
Sbjct: 274 HGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVH 315
>sp|Q91VN6|DDX41_MOUSE Probable ATP-dependent RNA helicase DDX41 OS=Mus musculus GN=Ddx41
PE=1 SV=2
Length = 622
Score = 216 bits (551), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 100/157 (63%), Positives = 123/157 (78%)
Query: 91 SLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMK 150
S+ + KGI Y+DPIKTSW PR +LS+ ++ H+ +R+ ILVEGD +PP SF+ MK
Sbjct: 128 SVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMK 187
Query: 151 LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQE 210
P +++R L+ KGI PTPIQ+QGIP LSGRD+IGIAFTGSGKTLVF LP++MFCLEQE
Sbjct: 188 FPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQE 247
Query: 211 TKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
+LPF EGPYGLIICPSRELARQTH I++YYC L
Sbjct: 248 KRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLL 284
Score = 127 bits (320), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 61/102 (59%), Positives = 75/102 (73%), Gaps = 4/102 (3%)
Query: 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT 62
T + RD+IGIAFTGSGKTLVF LP++MFCLEQE +LPF EGPYGLIICPSRELARQT
Sbjct: 214 TILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQT 273
Query: 63 HDIIQYYCAALPIP----LRTCLAIGGVPMNQSLDVIKKGIQ 100
H I++YYC L LR L IGG+ + + ++ I+ G+
Sbjct: 274 HGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVH 315
>sp|Q9V3C0|DDX41_DROME ATP-dependent RNA helicase abstrakt OS=Drosophila melanogaster
GN=abs PE=1 SV=1
Length = 619
Score = 205 bits (521), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 96/153 (62%), Positives = 116/153 (75%)
Query: 95 IKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPES 154
+ KGIQY PIKT+W+ PR I + ++ + +R LRILVEG+ P SFR MK P+
Sbjct: 128 LAKGIQYEQPIKTAWKPPRYIREMSEEEREAVRHELRILVEGETPSPPIRSFREMKFPKG 187
Query: 155 LVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLP 214
++ L AKGIK PTPIQVQG+P L+GRD+IGIAFTGSGKTLVFVLP++MF LEQE LP
Sbjct: 188 ILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLP 247
Query: 215 FLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
F EGPYGLIICPSRELA+QTH+IIQ+Y L
Sbjct: 248 FERNEGPYGLIICPSRELAKQTHEIIQHYSKHL 280
Score = 137 bits (344), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 63/97 (64%), Positives = 79/97 (81%), Gaps = 4/97 (4%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD+IGIAFTGSGKTLVFVLP++MF LEQE LPF EGPYGLIICPSRELA+QTH+IIQ
Sbjct: 215 RDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQ 274
Query: 68 YYCAALPI----PLRTCLAIGGVPMNQSLDVIKKGIQ 100
+Y L +R+CLA+GG+P++++LDVI +G+
Sbjct: 275 HYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGVH 311
>sp|Q5Z6G5|RH35B_ORYSJ DEAD-box ATP-dependent RNA helicase 35B OS=Oryza sativa subsp.
japonica GN=Os06g0697200 PE=3 SV=1
Length = 619
Score = 200 bits (508), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 101/196 (51%), Positives = 137/196 (69%), Gaps = 14/196 (7%)
Query: 52 ICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRA 111
+ P+ L +Q ++I++ R L +P+ + I KGI Y++PI T WR
Sbjct: 95 VTPAERLLQQEREMIEHLSD------RKAL----MPVGE----IAKGISYSEPITTGWRP 140
Query: 112 PRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQ 171
P + +P D +RR+ ILV+GDDVPP SF ++LPE ++RAL KGI+KPTPIQ
Sbjct: 141 PLRLRRMPRSRADALRRSWHILVDGDDVPPPSRSFGDLRLPEPILRALRGKGIEKPTPIQ 200
Query: 172 VQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRE 231
VQG+P ALSGRD+IGIAFTGSGKTLVFVLP++M L++E +P +PGEGP+GLI+CPSRE
Sbjct: 201 VQGLPVALSGRDMIGIAFTGSGKTLVFVLPLIMAALQEEILMPIVPGEGPFGLIVCPSRE 260
Query: 232 LARQTHDIIQYYCAAL 247
LARQTH++I+ + A L
Sbjct: 261 LARQTHEVIEMFLAPL 276
Score = 117 bits (294), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 56/99 (56%), Positives = 75/99 (75%), Gaps = 4/99 (4%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIAFTGSGKTLVFVLP++M L++E +P +PGEGP+GLI+CPSRELARQTH++
Sbjct: 209 SGRDMIGIAFTGSGKTLVFVLPLIMAALQEEILMPIVPGEGPFGLIVCPSRELARQTHEV 268
Query: 66 IQYYCAALPI----PLRTCLAIGGVPMNQSLDVIKKGIQ 100
I+ + A L +R L IGGV M ++V+KKG+
Sbjct: 269 IEMFLAPLMEAGYPEIRPLLCIGGVDMRTQMEVVKKGVH 307
>sp|Q0E3X4|RH35A_ORYSJ DEAD-box ATP-dependent RNA helicase 35A OS=Oryza sativa subsp.
japonica GN=Os02g0150100 PE=2 SV=2
Length = 627
Score = 192 bits (488), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 89/162 (54%), Positives = 119/162 (73%)
Query: 91 SLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMK 150
S+ + KGI Y+DP+KT W+ P + +P D +RR ILV+GDDVPP FR ++
Sbjct: 129 SVRELAKGITYSDPLKTGWKPPLRLRRMPRAKADELRRKWHILVDGDDVPPPARDFRDLR 188
Query: 151 LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQE 210
LPE ++R L KGI +PTPIQVQG+P LSGRD+IGIAFTGSGKTLVFVLP++M L++E
Sbjct: 189 LPEPMLRKLREKGIVQPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPLIMVALQEE 248
Query: 211 TKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIGSF 252
+P +PGEGP+G+IICPSRELA+QT+D+I+ + L +
Sbjct: 249 MMMPIVPGEGPFGMIICPSRELAKQTYDVIEQFLVPLKEAGY 290
Score = 118 bits (295), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/99 (56%), Positives = 74/99 (74%), Gaps = 4/99 (4%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIAFTGSGKTLVFVLP++M L++E +P +PGEGP+G+IICPSRELA+QT+D+
Sbjct: 218 SGRDMIGIAFTGSGKTLVFVLPLIMVALQEEMMMPIVPGEGPFGMIICPSRELAKQTYDV 277
Query: 66 IQYYCAALPI----PLRTCLAIGGVPMNQSLDVIKKGIQ 100
I+ + L +R L IGGV M LDV+KKG+
Sbjct: 278 IEQFLVPLKEAGYPEIRPLLCIGGVDMRAQLDVVKKGVH 316
>sp|Q54KG1|DDX41_DICDI Probable ATP-dependent RNA helicase ddx41 OS=Dictyostelium
discoideum GN=ddx41 PE=1 SV=1
Length = 671
Score = 191 bits (485), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 86/151 (56%), Positives = 116/151 (76%)
Query: 97 KGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLV 156
K + Y D IKT+WRAPR IL ++ H +R L I+ +G+D+PP +F+ MK+P+ ++
Sbjct: 175 KDVIYTDSIKTNWRAPRYILERDEKDHQKVRDQLNIITDGEDIPPPITTFKEMKIPKPVI 234
Query: 157 RALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL 216
L KGIKKP+PIQVQG+P LSGRD+IGIA+TGSGKTLVF LP+++F LE+E KLP +
Sbjct: 235 DVLLEKGIKKPSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPMVLFALEEECKLPII 294
Query: 217 PGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
GEGP+GLI+CPSRELARQT+D++ + AL
Sbjct: 295 QGEGPFGLILCPSRELARQTYDLVNSFTNAL 325
Score = 118 bits (295), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 55/98 (56%), Positives = 73/98 (74%), Gaps = 5/98 (5%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD+IGIA+TGSGKTLVF LP+++F LE+E KLP + GEGP+GLI+CPSRELARQT+D++
Sbjct: 260 RDMIGIAYTGSGKTLVFTLPMVLFALEEECKLPIIQGEGPFGLILCPSRELARQTYDLVN 319
Query: 68 YYCAALPI-----PLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ AL LRT LAIGG+ + + + KKG+
Sbjct: 320 SFTNALHKNGGHPQLRTLLAIGGIDLREQEHIFKKGVH 357
>sp|Q9LU46|RH35_ARATH DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana
GN=RH35 PE=2 SV=1
Length = 591
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 81/157 (51%), Positives = 113/157 (71%)
Query: 91 SLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMK 150
S+ + KGI Y +P+ T W+ P I + + D+IR+ I+V GDD+PP +F+ MK
Sbjct: 93 SVRELAKGITYTEPLLTGWKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMK 152
Query: 151 LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQE 210
P ++ L+ KGI +PTPIQVQG+P L+GRD+IGIAFTGSGKTLVFVLP++M L++E
Sbjct: 153 FPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEE 212
Query: 211 TKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
+P GEGP GLI+CPSRELARQT+++++ + A L
Sbjct: 213 MMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPL 249
Score = 115 bits (288), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/97 (55%), Positives = 73/97 (75%), Gaps = 4/97 (4%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD+IGIAFTGSGKTLVFVLP++M L++E +P GEGP GLI+CPSRELARQT+++++
Sbjct: 184 RDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVE 243
Query: 68 YYCAALPI----PLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ A L PLR+ L IGG+ M L+V+K+G+
Sbjct: 244 QFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVH 280
>sp|Q9SZB4|RH43_ARATH Putative DEAD-box ATP-dependent RNA helicase 43 OS=Arabidopsis
thaliana GN=RH43 PE=3 SV=1
Length = 542
Score = 172 bits (436), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 111/157 (70%)
Query: 91 SLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMK 150
S+ + +GI Y +P+ T W+ P + + + D+IR+ I V G+D+PP +F MK
Sbjct: 44 SVGELARGITYTEPLSTWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMK 103
Query: 151 LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQE 210
P L+R L+ KGI PTPIQVQG+P LSGRD+IGIAFTGSGKTLVFVLP+++ L++E
Sbjct: 104 FPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEE 163
Query: 211 TKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
+P GEGP L+ICPSRELA+QT+D+++ + A+L
Sbjct: 164 IMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASL 200
Score = 114 bits (284), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 54/99 (54%), Positives = 73/99 (73%), Gaps = 4/99 (4%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIAFTGSGKTLVFVLP+++ L++E +P GEGP L+ICPSRELA+QT+D+
Sbjct: 133 SGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDV 192
Query: 66 IQYYCAALPIP----LRTCLAIGGVPMNQSLDVIKKGIQ 100
++ + A+L LR+ L IGGV M LDV+KKG+
Sbjct: 193 VEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVH 231
>sp|Q0J7Y8|RH45_ORYSJ DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sativa subsp.
japonica GN=Os08g0154200 PE=3 SV=2
Length = 947
Score = 109 bits (272), Expect = 2e-23, Method: Composition-based stats.
Identities = 56/123 (45%), Positives = 75/123 (60%), Gaps = 3/123 (2%)
Query: 127 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIG 186
R+NL + V G DVP ++ L L+ ++ G +KP PIQ Q +P +SGRD IG
Sbjct: 268 RKNLELKVHGKDVPKPIKTWVQSGLTSKLLDTIKKLGFEKPMPIQAQALPIIMSGRDCIG 327
Query: 187 IAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAA 246
IA TGSGKTL FVLP+L +Q P +PG+GP GLI+ P+REL Q H I+ + +
Sbjct: 328 IAKTGSGKTLAFVLPMLRHVKDQP---PVVPGDGPIGLIMAPTRELVVQIHSDIKKFAKS 384
Query: 247 LPI 249
L I
Sbjct: 385 LGI 387
Score = 79.0 bits (193), Expect = 3e-14, Method: Composition-based stats.
Identities = 44/96 (45%), Positives = 60/96 (62%), Gaps = 7/96 (7%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD IGIA TGSGKTL FVLP+L +Q P +PG+GP GLI+ P+REL Q H
Sbjct: 321 SGRDCIGIAKTGSGKTLAFVLPMLRHVKDQP---PVVPGDGPIGLIMAPTRELVVQIHSD 377
Query: 66 IQYYCAALPIPLRTCLAI-GGVPMNQSLDVIKKGIQ 100
I+ + +L I C+AI GG + Q + +K+G +
Sbjct: 378 IKKFAKSLGI---NCVAIYGGSGVAQQISELKRGAE 410
>sp|Q7ZY47|DDX42_XENLA ATP-dependent RNA helicase DDX42 OS=Xenopus laevis GN=ddx42 PE=2
SV=1
Length = 947
Score = 107 bits (267), Expect = 8e-23, Method: Composition-based stats.
Identities = 53/119 (44%), Positives = 71/119 (59%), Gaps = 4/119 (3%)
Query: 119 PDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAA 178
P Q+ ++ R L + V G P C SF E L+ + +PTPIQ QGIP A
Sbjct: 226 PQQITEL-RHKLNLRVSGAAPPRLCSSFAHFGFDEQLLHQIRKSEYTQPTPIQCQGIPVA 284
Query: 179 LSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
LSGRD+IGIA TGSGKT F+ PIL+ ++Q+ P +GP +I+CP+REL +Q H
Sbjct: 285 LSGRDMIGIAKTGSGKTAAFIWPILVHIMDQKE---LQPADGPIAVIVCPTRELCQQIH 340
Score = 67.4 bits (163), Expect = 9e-11, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT F+ PIL+ ++Q+ P +GP +I+CP+REL +Q H
Sbjct: 286 SGRDMIGIAKTGSGKTAAFIWPILVHIMDQKE---LQPADGPIAVIVCPTRELCQQIHSE 342
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + A LR+ GG M + +++G +
Sbjct: 343 CKRFGKAY--NLRSVAVYGGGSMWEQAKALQEGAE 375
>sp|Q5R7D1|DDX42_PONAB ATP-dependent RNA helicase DDX42 OS=Pongo abelii GN=DDX42 PE=2 SV=1
Length = 942
Score = 103 bits (257), Expect = 1e-21, Method: Composition-based stats.
Identities = 52/119 (43%), Positives = 71/119 (59%), Gaps = 4/119 (3%)
Query: 119 PDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAA 178
P Q+ D+ R L + V G P SF E L+ + +PTPIQ QG+P A
Sbjct: 229 PQQLIDL-RHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVA 287
Query: 179 LSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
LSGRD+IGIA TGSGKT F+ P+L+ ++Q+ PG+GP +I+CP+REL +Q H
Sbjct: 288 LSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE---LEPGDGPIAVIVCPTRELCQQIH 343
Score = 66.6 bits (161), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT F+ P+L+ ++Q+ PG+GP +I+CP+REL +Q H
Sbjct: 289 SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE---LEPGDGPIAVIVCPTRELCQQIHAE 345
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + A LR+ GG M + +++G +
Sbjct: 346 GKRFGKAY--NLRSVAVYGGGSMWEQAKALQEGAE 378
>sp|Q810A7|DDX42_MOUSE ATP-dependent RNA helicase DDX42 OS=Mus musculus GN=Ddx42 PE=1 SV=3
Length = 929
Score = 103 bits (257), Expect = 1e-21, Method: Composition-based stats.
Identities = 52/119 (43%), Positives = 71/119 (59%), Gaps = 4/119 (3%)
Query: 119 PDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAA 178
P Q+ D+ R L + V G P SF E L+ + +PTPIQ QG+P A
Sbjct: 229 PQQLIDL-RHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVA 287
Query: 179 LSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
LSGRD+IGIA TGSGKT F+ P+L+ ++Q+ PG+GP +I+CP+REL +Q H
Sbjct: 288 LSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE---LEPGDGPIAVIVCPTRELCQQIH 343
Score = 67.8 bits (164), Expect = 8e-11, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT F+ P+L+ ++Q+ PG+GP +I+CP+REL +Q H
Sbjct: 289 SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE---LEPGDGPIAVIVCPTRELCQQIHAE 345
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + A LR+ GG M + +++G +
Sbjct: 346 CKRFGKAY--NLRSVAVYGGGSMWEQAKALQEGAE 378
>sp|Q86XP3|DDX42_HUMAN ATP-dependent RNA helicase DDX42 OS=Homo sapiens GN=DDX42 PE=1 SV=1
Length = 938
Score = 103 bits (257), Expect = 1e-21, Method: Composition-based stats.
Identities = 52/119 (43%), Positives = 71/119 (59%), Gaps = 4/119 (3%)
Query: 119 PDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAA 178
P Q+ D+ R L + V G P SF E L+ + +PTPIQ QG+P A
Sbjct: 229 PQQLIDL-RHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVA 287
Query: 179 LSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
LSGRD+IGIA TGSGKT F+ P+L+ ++Q+ PG+GP +I+CP+REL +Q H
Sbjct: 288 LSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE---LEPGDGPIAVIVCPTRELCQQIH 343
Score = 67.8 bits (164), Expect = 8e-11, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT F+ P+L+ ++Q+ PG+GP +I+CP+REL +Q H
Sbjct: 289 SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE---LEPGDGPIAVIVCPTRELCQQIHAE 345
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + A LR+ GG M + +++G +
Sbjct: 346 CKRFGKAY--NLRSVAVYGGGSMWEQAKALQEGAE 378
>sp|Q5F485|DDX42_CHICK ATP-dependent RNA helicase DDX42 OS=Gallus gallus GN=DDX42 PE=2
SV=1
Length = 944
Score = 102 bits (255), Expect = 2e-21, Method: Composition-based stats.
Identities = 51/119 (42%), Positives = 71/119 (59%), Gaps = 4/119 (3%)
Query: 119 PDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAA 178
P QV ++ R L + V G P SF E L+ + +PTPIQ QG+P A
Sbjct: 229 PQQVVEL-RHKLNLRVSGAAPPRPGSSFARFGFDEQLMHQIRKSEYTQPTPIQCQGVPVA 287
Query: 179 LSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
+SGRD+IGIA TGSGKT F+ P+L+ ++Q+ PG+GP +I+CP+REL +Q H
Sbjct: 288 MSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE---LEPGDGPIAVIVCPTRELCQQIH 343
Score = 68.2 bits (165), Expect = 5e-11, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT F+ P+L+ ++Q+ PG+GP +I+CP+REL +Q H
Sbjct: 289 SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKE---LEPGDGPIAVIVCPTRELCQQIHSE 345
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + A LR+ GG M + +++G +
Sbjct: 346 CKRFGKAY--NLRSVAVYGGGSMWEQAKALQEGAE 378
>sp|Q6BML1|PRP5_DEBHA Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=PRP5 PE=3 SV=2
Length = 913
Score = 102 bits (254), Expect = 2e-21, Method: Composition-based stats.
Identities = 64/165 (38%), Positives = 91/165 (55%), Gaps = 13/165 (7%)
Query: 93 DVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMK-- 150
DV IQY+ K + P I LP++ NLR+ ++G V C+ +++
Sbjct: 264 DVDHNQIQYHPFRKDFYTEPTEISKLPEEE----VANLRLKLDGIKVRGVNCTRPIIRWS 319
Query: 151 ---LPESLVRALEAK-GIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFC 206
LP +++ +E + P+ IQ Q IPA +SGRDIIG+A TGSGKTL FVLP+L
Sbjct: 320 QLGLPSTIMSIIEGRLNYSSPSSIQAQAIPAIMSGRDIIGVAKTGSGKTLSFVLPLLRHI 379
Query: 207 LEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIGS 251
+Q P G+GP GLI+ P+RELA Q H + ++ L I S
Sbjct: 380 QDQP---PLKKGDGPIGLIMTPTRELALQIHKELNHFTKKLNISS 421
Score = 77.8 bits (190), Expect = 7e-14, Method: Composition-based stats.
Identities = 42/95 (44%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RDIIG+A TGSGKTL FVLP+L +Q P G+GP GLI+ P+RELA Q H
Sbjct: 353 SGRDIIGVAKTGSGKTLSFVLPLLRHIQDQP---PLKKGDGPIGLIMTPTRELALQIHKE 409
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ ++ L I +C GG + + +KKG Q
Sbjct: 410 LNHFTKKLNI--SSCCCFGGSSIESQIAELKKGAQ 442
>sp|Q84UQ1|RH42_ORYSJ DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa subsp.
japonica GN=Os08g0159900 PE=2 SV=1
Length = 1049
Score = 101 bits (252), Expect = 5e-21, Method: Composition-based stats.
Identities = 54/123 (43%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Query: 127 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIG 186
R+ L + V G DVP ++ L L+ ++ G +KP IQ Q +P +SGRD IG
Sbjct: 407 RKQLELKVHGKDVPKPIKTWVQSGLTSKLLDTIKKLGFEKPMSIQAQALPIIMSGRDCIG 466
Query: 187 IAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAA 246
IA TGSGKTL FVLP+L +Q +PG+GP GLI+ P+REL Q H I+ + A
Sbjct: 467 IAKTGSGKTLAFVLPMLRHVKDQPA---VVPGDGPIGLIMAPTRELVVQIHSDIKKFSKA 523
Query: 247 LPI 249
L I
Sbjct: 524 LGI 526
Score = 76.6 bits (187), Expect = 1e-13, Method: Composition-based stats.
Identities = 44/96 (45%), Positives = 59/96 (61%), Gaps = 7/96 (7%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD IGIA TGSGKTL FVLP+L +Q +PG+GP GLI+ P+REL Q H
Sbjct: 460 SGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPA---VVPGDGPIGLIMAPTRELVVQIHSD 516
Query: 66 IQYYCAALPIPLRTCLAI-GGVPMNQSLDVIKKGIQ 100
I+ + AL I C+AI GG + Q + +K+G +
Sbjct: 517 IKKFSKALGI---NCVAIYGGSGVAQQISELKRGAE 549
>sp|A5E058|PRP5_LODEL Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=PRP5 PE=3 SV=1
Length = 994
Score = 100 bits (249), Expect = 9e-21, Method: Composition-based stats.
Identities = 57/153 (37%), Positives = 91/153 (59%), Gaps = 5/153 (3%)
Query: 99 IQYNDPIKTSWRAPRCILSLPDQVHDIIRRNL-RILVEGDDVPPACCSFRLMKLPESLVR 157
I+Y K ++ P + ++ ++ D++R L + G +VPP ++ + +PES++
Sbjct: 341 IEYPKFRKHFYQVPFEMSTMDNRELDMLRLELDNVRARGKNVPPPFLTWGQLLMPESVMS 400
Query: 158 ALEAK-GIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL 216
++ G KP+PIQ Q IP LSGRD+IG+A TGSGKTL +VLP++ Q+ P
Sbjct: 401 VIQNDLGFAKPSPIQCQAIPIVLSGRDMIGVAKTGSGKTLSYVLPMVRHI--QDQLFP-K 457
Query: 217 PGEGPYGLIICPSRELARQTHDIIQYYCAALPI 249
PGEGP GL++ P+RELA Q I + + + +
Sbjct: 458 PGEGPIGLVLSPTRELALQIEKEILKFSSTMDL 490
Score = 68.6 bits (166), Expect = 4e-11, Method: Composition-based stats.
Identities = 37/94 (39%), Positives = 56/94 (59%), Gaps = 5/94 (5%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IG+A TGSGKTL +VLP++ Q+ P PGEGP GL++ P+RELA Q
Sbjct: 424 SGRDMIGVAKTGSGKTLSYVLPMVRHI--QDQLFP-KPGEGPIGLVLSPTRELALQIEKE 480
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGI 99
I + + + L+ C GG + + +K+G+
Sbjct: 481 ILKFSSTM--DLKVCCCYGGSNIENQISELKRGV 512
>sp|Q5QMN3|RH20_ORYSJ DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp.
japonica GN=Os01g0197200 PE=3 SV=2
Length = 494
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 79/139 (56%), Gaps = 5/139 (3%)
Query: 114 CILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQ 173
+ + ++ + RR I VEG DVP FR + PE +++ + G +PTPIQ Q
Sbjct: 61 SVAGMTEEEVEAYRRRREITVEGRDVPKPVREFRDVGFPEYVLQEITKAGFVEPTPIQSQ 120
Query: 174 GIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGLIICPSREL 232
G P AL GRD+IGIA TGSGKTL ++LP ++ Q P L PG+GP L++ P+REL
Sbjct: 121 GWPMALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQ----PILAPGDGPIVLVLAPTREL 176
Query: 233 ARQTHDIIQYYCAALPIGS 251
A Q + A+ I S
Sbjct: 177 AVQIQQEATKFGASSKIKS 195
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 56/94 (59%), Gaps = 7/94 (7%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGLIICPSRELARQTHDII 66
RD+IGIA TGSGKTL ++LP ++ Q P L PG+GP L++ P+RELA Q
Sbjct: 129 RDLIGIAETGSGKTLAYLLPAIVHVNAQ----PILAPGDGPIVLVLAPTRELAVQIQQEA 184
Query: 67 QYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ A+ I TC+ GGVP + ++KG++
Sbjct: 185 TKFGASSKIK-STCI-YGGVPKGPQVRDLQKGVE 216
>sp|Q4PFD9|PRP5_USTMA Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PRP5 PE=3 SV=1
Length = 1156
Score = 99.4 bits (246), Expect = 2e-20, Method: Composition-based stats.
Identities = 57/151 (37%), Positives = 82/151 (54%), Gaps = 4/151 (2%)
Query: 98 GIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNL-RILVEGDDVPPACCSFRLMKLPESLV 156
I Y K + P I + +++ + IR + I V G D P + LP S +
Sbjct: 429 AIDYEPFNKAFYHPPAEIQDMSEELANQIRLEMDAITVRGRDCPKPLTKWSHCGLPASCL 488
Query: 157 RALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL 216
++ G PTPIQ Q +PA +SGRDIIG+A TGSGKT+ F+LP+ +Q P
Sbjct: 489 DVIKRLGYSAPTPIQSQAMPAIMSGRDIIGVAKTGSGKTMAFLLPMFRHIKDQR---PVE 545
Query: 217 PGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
P EGP G+I+ P+RELA Q + ++ + AL
Sbjct: 546 PSEGPVGIIMTPTRELAVQIYREMRPFIKAL 576
Score = 71.2 bits (173), Expect = 6e-12, Method: Composition-based stats.
Identities = 39/97 (40%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELAR 60
M + RDIIG+A TGSGKT+ F+LP+ +Q P P EGP G+I+ P+RELA
Sbjct: 507 MPAIMSGRDIIGVAKTGSGKTMAFLLPMFRHIKDQR---PVEPSEGPVGIIMTPTRELAV 563
Query: 61 QTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKK 97
Q + ++ + AL LR GG P+++ + +KK
Sbjct: 564 QIYREMRPFIKAL--GLRAACVYGGAPISEQIAEMKK 598
>sp|A3LQ55|PRP5_PICST Pre-mRNA-processing ATP-dependent RNA helicase PRP5
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PRP5 PE=3 SV=2
Length = 875
Score = 97.4 bits (241), Expect = 8e-20, Method: Composition-based stats.
Identities = 65/152 (42%), Positives = 85/152 (55%), Gaps = 7/152 (4%)
Query: 99 IQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLR-ILVEGDDVPPACCSFRLMKLPESLVR 157
+ Y+D K ++ P I + + + IR L I V G +VP + + LP S +
Sbjct: 226 MNYSDFRKNFYQEPSEIQNWTAEQVESIRLELDGIKVAGSNVPRPVLKWSHLGLPASYMN 285
Query: 158 ALEAK-GIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL 216
+E K K PT IQ Q +PA +SGRDIIG+A TGSGKTL FVLP+L +Q P L
Sbjct: 286 IIEDKLEYKAPTSIQSQALPAIMSGRDIIGVAKTGSGKTLSFVLPMLRHIQDQ----PDL 341
Query: 217 P-GEGPYGLIICPSRELARQTHDIIQYYCAAL 247
GEGP GLI+ P+RELA Q H I + L
Sbjct: 342 KDGEGPIGLILSPTRELAVQIHKEITNFTKRL 373
Score = 75.5 bits (184), Expect = 3e-13, Method: Composition-based stats.
Identities = 45/96 (46%), Positives = 56/96 (58%), Gaps = 7/96 (7%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHD 64
+ RDIIG+A TGSGKTL FVLP+L +Q P L GEGP GLI+ P+RELA Q H
Sbjct: 309 SGRDIIGVAKTGSGKTLSFVLPMLRHIQDQ----PDLKDGEGPIGLILSPTRELAVQIHK 364
Query: 65 IIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
I + L + C GG P+ + +KKG Q
Sbjct: 365 EITNFTKRL--GMTACCCYGGSPIESQIAELKKGAQ 398
>sp|A7TTT5|DBP2_VANPO ATP-dependent RNA helicase DBP2 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=DBP2 PE=3 SV=1
Length = 441
Score = 97.4 bits (241), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 82/147 (55%), Gaps = 9/147 (6%)
Query: 106 KTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIK 165
K ++ + + DQ + RR + + G D+P SF P+ ++ ++A+G +
Sbjct: 75 KNFYQEAESVKARSDQEINEFRREHEMTITGHDIPKPITSFDEAGFPDYVLEEVKAEGFE 134
Query: 166 KPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGL 224
KPT IQ QG P ALSGRD+IG+A TGSGKTL + LP ++ Q P L PG+GP L
Sbjct: 135 KPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQ----PLLSPGDGPIVL 190
Query: 225 IICPSRELARQTHDIIQYYCAALPIGS 251
++ P+RELA Q IQ C+ S
Sbjct: 191 VLAPTRELAVQ----IQKECSKFGSSS 213
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 11/96 (11%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGLIICPSRELARQTHDII 66
RD+IG+A TGSGKTL + LP ++ Q P L PG+GP L++ P+RELA Q I
Sbjct: 151 RDMIGVAATGSGKTLSYCLPGIVHINAQ----PLLSPGDGPIVLVLAPTRELAVQ----I 202
Query: 67 QYYCAAL--PIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
Q C+ +R GGVP Q + + +G +
Sbjct: 203 QKECSKFGSSSRIRNSCVYGGVPRGQQIRELSRGAE 238
>sp|Q8SRB2|DBP2_ENCCU ATP-dependent RNA helicase DBP2 OS=Encephalitozoon cuniculi (strain
GB-M1) GN=DBP2 PE=3 SV=1
Length = 495
Score = 97.1 bits (240), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 72/126 (57%), Gaps = 3/126 (2%)
Query: 126 IRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDII 185
R+ ++V+G +VP F +V +L KG +PT IQ QG P ALSGRD++
Sbjct: 69 FRKTNEMIVKGTNVPHPIQKFEEAGFSSEVVSSLVEKGFSEPTAIQGQGWPMALSGRDMV 128
Query: 186 GIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCA 245
GIA TGSGKTL F+LP L+ +Q+ P G+GP L++ P+REL Q ++ +C
Sbjct: 129 GIAQTGSGKTLSFILPALVHAKDQQ---PLRRGDGPIVLVLAPTRELVMQIKKVVDEFCG 185
Query: 246 ALPIGS 251
+ S
Sbjct: 186 MFNLRS 191
Score = 65.1 bits (157), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 61/118 (51%), Gaps = 11/118 (9%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD++GIA TGSGKTL F+LP L+ +Q+ P G+GP L++ P+REL Q +
Sbjct: 123 SGRDMVGIAQTGSGKTLSFILPALVHAKDQQ---PLRRGDGPIVLVLAPTRELVMQIKKV 179
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVH 123
+ +C LR+ GG + + +G + I T P ++ L DQ H
Sbjct: 180 VDEFCGMF--NLRSTAVYGGASSQPQIRALHEGAEV--VIAT----PGRLIDLHDQGH 229
>sp|A5DDF4|PRP5_PICGU Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PRP5 PE=3 SV=2
Length = 862
Score = 96.7 bits (239), Expect = 1e-19, Method: Composition-based stats.
Identities = 55/139 (39%), Positives = 80/139 (57%), Gaps = 5/139 (3%)
Query: 99 IQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLR-ILVEGDDVPPACCSFRLMKLPESLVR 157
++Y K + P + +P + +R + I V G D P + + LP S++
Sbjct: 220 MEYTSVRKKFYTPPEELKDVPPEKVTALRTAMDGIKVRGSDCPMPIQKWAQLGLPSSIMT 279
Query: 158 ALEAK-GIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL 216
LE K G P+PIQ Q +PA +SGRDIIG+A TGSGKTL FV+P++ ++Q P
Sbjct: 280 VLEEKLGYDTPSPIQSQALPAIMSGRDIIGVANTGSGKTLAFVIPLIRHIMDQP---PLK 336
Query: 217 PGEGPYGLIICPSRELARQ 235
G+GP G+I+ P+RELA Q
Sbjct: 337 SGDGPIGVILTPTRELALQ 355
Score = 71.2 bits (173), Expect = 6e-12, Method: Composition-based stats.
Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RDIIG+A TGSGKTL FV+P++ ++Q P G+GP G+I+ P+RELA Q
Sbjct: 303 SGRDIIGVANTGSGKTLAFVIPLIRHIMDQP---PLKSGDGPIGVILTPTRELALQIQKE 359
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + A + L C GG P+ + +K+G +
Sbjct: 360 LVNFTQA--VELSVCCCYGGSPIESQIADLKRGTE 392
>sp|Q54Y81|DDX23_DICDI ATP-dependent RNA helicase ddx23 OS=Dictyostelium discoideum
GN=helB2 PE=2 SV=1
Length = 834
Score = 96.3 bits (238), Expect = 2e-19, Method: Composition-based stats.
Identities = 51/150 (34%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 98 GIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVR 157
G Q ++ T W + + + S+ + I + + I +G P +++ LP ++
Sbjct: 368 GKQISELPDTHW-SKKPLKSMTKRDWHIFKEDFNISTKGGIAPNPIRTWQESNLPREILE 426
Query: 158 ALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP 217
A+ G +KP+PIQ+Q IP +L+GRDI+GIA TGSGKT FV+P+L++ +Q
Sbjct: 427 AIRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPMLIYISKQPRLTKDTE 486
Query: 218 GEGPYGLIICPSRELARQ----THDIIQYY 243
+GPY L++ P+REL +Q T + Q++
Sbjct: 487 ADGPYALVMAPTRELVQQIEKETRNFAQHF 516
Score = 59.7 bits (143), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 23/130 (17%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQ----TH 63
RDI+GIA TGSGKT FV+P+L++ +Q +GPY L++ P+REL +Q T
Sbjct: 451 RDILGIAETGSGKTCAFVIPMLIYISKQPRLTKDTEADGPYALVMAPTRELVQQIEKETR 510
Query: 64 DIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVH 123
+ Q++ R +GG + + KG + I++ P +++
Sbjct: 511 NFAQHF------GFRVVSLVGGQSIEDQAYQVSKGCE-------------IIIATPGRLN 551
Query: 124 DIIRRNLRIL 133
D + + +L
Sbjct: 552 DCLEKRYLVL 561
>sp|Q9SF41|RH45_ARATH DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana
GN=RH45 PE=2 SV=1
Length = 989
Score = 95.5 bits (236), Expect = 3e-19, Method: Composition-based stats.
Identities = 51/123 (41%), Positives = 71/123 (57%), Gaps = 3/123 (2%)
Query: 127 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIG 186
R+ L + V G DVP + L ++ L+ +KP PIQ Q +P +SGRD IG
Sbjct: 379 RKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIG 438
Query: 187 IAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAA 246
+A TGSGKTL FVLP+L +Q P G+GP GL++ P+REL +Q + I+ + A
Sbjct: 439 VAKTGSGKTLGFVLPMLRHIKDQP---PVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKA 495
Query: 247 LPI 249
L I
Sbjct: 496 LGI 498
Score = 68.6 bits (166), Expect = 4e-11, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 58/96 (60%), Gaps = 7/96 (7%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD IG+A TGSGKTL FVLP+L +Q P G+GP GL++ P+REL +Q +
Sbjct: 432 SGRDCIGVAKTGSGKTLGFVLPMLRHIKDQP---PVEAGDGPIGLVMAPTRELVQQIYSD 488
Query: 66 IQYYCAALPIPLRTCLAI-GGVPMNQSLDVIKKGIQ 100
I+ + AL I C+ + GG + Q + +K+G +
Sbjct: 489 IRKFSKALGI---ICVPVYGGSGVAQQISELKRGTE 521
>sp|Q8H0U8|RH42_ARATH DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana
GN=RH42 PE=1 SV=2
Length = 1166
Score = 95.5 bits (236), Expect = 4e-19, Method: Composition-based stats.
Identities = 50/123 (40%), Positives = 70/123 (56%), Gaps = 3/123 (2%)
Query: 127 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIG 186
R+ L + V G DVP + L ++ ++ +KP PIQ Q +P +SGRD IG
Sbjct: 512 RKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIG 571
Query: 187 IAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAA 246
+A TGSGKTL FVLP+L +Q P G+GP GL++ P+REL +Q H I+ +
Sbjct: 572 VAKTGSGKTLGFVLPMLRHIKDQP---PVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKP 628
Query: 247 LPI 249
L I
Sbjct: 629 LGI 631
Score = 70.9 bits (172), Expect = 8e-12, Method: Composition-based stats.
Identities = 38/95 (40%), Positives = 57/95 (60%), Gaps = 5/95 (5%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD IG+A TGSGKTL FVLP+L +Q P G+GP GL++ P+REL +Q H
Sbjct: 565 SGRDCIGVAKTGSGKTLGFVLPMLRHIKDQP---PVEAGDGPIGLVMAPTRELVQQIHSD 621
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
I+ + + P+ +R GG + Q + +K+G +
Sbjct: 622 IRKF--SKPLGIRCVPVYGGSGVAQQISELKRGTE 654
>sp|A6RGE3|DBP2_AJECN ATP-dependent RNA helicase DBP2 OS=Ajellomyces capsulata (strain
NAm1 / WU24) GN=DBP2 PE=3 SV=1
Length = 542
Score = 94.7 bits (234), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 70/113 (61%), Gaps = 5/113 (4%)
Query: 124 DIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRD 183
D R+ I V+G +VP +F P+ ++ ++A+G +PT IQ QG P ALSGRD
Sbjct: 105 DAFRKEHEITVQGKNVPRPVETFDEAGFPQYVMSEVKAQGFARPTAIQAQGWPMALSGRD 164
Query: 184 IIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGLIICPSRELARQ 235
++GIA TGSGKTL + LP ++ Q P L PG+GP L++ P+RELA Q
Sbjct: 165 VVGIAETGSGKTLTYCLPAIVHINAQ----PLLAPGDGPIVLVLAPTRELAVQ 213
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGLIICPSRELARQTHDII 66
RD++GIA TGSGKTL + LP ++ Q P L PG+GP L++ P+RELA Q I
Sbjct: 163 RDVVGIAETGSGKTLTYCLPAIVHINAQ----PLLAPGDGPIVLVLAPTRELAVQIQTEI 218
Query: 67 QYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + I R GGVP + + +G++
Sbjct: 219 TKFGKSSRI--RNTCVYGGVPKGPQIRDLTRGVE 250
>sp|Q5B0J9|DBP2_EMENI ATP-dependent RNA helicase dbp2 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=dbp2
PE=3 SV=1
Length = 563
Score = 94.4 bits (233), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 75/127 (59%), Gaps = 5/127 (3%)
Query: 124 DIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRD 183
D R+ + V+G DVP +F P+ ++ ++A+G +KPT IQ QG P ALSGRD
Sbjct: 120 DEFRKKCEMTVQGRDVPRPVETFDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMALSGRD 179
Query: 184 IIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGLIICPSRELARQTHDIIQY 242
++GIA TGSGKTL + LP ++ Q P L PG+GP LI+ P+RELA Q I
Sbjct: 180 VVGIAETGSGKTLSYCLPAIVHINAQ----PLLAPGDGPIVLILAPTRELAVQIQAEISK 235
Query: 243 YCAALPI 249
+ + I
Sbjct: 236 FGKSSRI 242
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGLIICPSRELARQTHD 64
+ RD++GIA TGSGKTL + LP ++ Q P L PG+GP LI+ P+RELA Q
Sbjct: 176 SGRDVVGIAETGSGKTLSYCLPAIVHINAQ----PLLAPGDGPIVLILAPTRELAVQIQA 231
Query: 65 IIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
I + + I R GGVP + + +G++
Sbjct: 232 EISKFGKSSRI--RNTCVYGGVPKGPQIRDLSRGVE 265
>sp|Q53RK8|RH21_ORYSJ DEAD-box ATP-dependent RNA helicase 21 OS=Oryza sativa subsp.
japonica GN=Os03g0708600 PE=2 SV=1
Length = 736
Score = 94.4 bits (233), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 85/165 (51%), Gaps = 9/165 (5%)
Query: 89 NQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRL 148
+ D K ++ + W + + + ++ I R + I +G VP +
Sbjct: 261 KKEADAAAKYDAFDMRVDRHW-TQKSLDEMTERDWRIFREDFNISYKGSKVPRPMRKWSE 319
Query: 149 MKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLE 208
KL L+RA+E G K+P+PIQ+ IP L RD+IGIA TGSGKT FVLP+L +
Sbjct: 320 SKLGTELLRAVEKAGYKEPSPIQMASIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYI-- 377
Query: 209 QETKLPFL----PGEGPYGLIICPSRELARQTHDIIQYYCAALPI 249
T+LP + EGPY +++ P+RELA+Q + + L I
Sbjct: 378 --TRLPPISEENEAEGPYAVVMAPTRELAQQIEEETVKFATYLGI 420
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 10/97 (10%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL----PGEGPYGLIICPSRELARQ 61
RD+IGIA TGSGKT FVLP+L + T+LP + EGPY +++ P+RELA+Q
Sbjct: 351 QQRDVIGIAETGSGKTAAFVLPMLSYI----TRLPPISEENEAEGPYAVVMAPTRELAQQ 406
Query: 62 THDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKG 98
+ + L I + + +GG + + I++G
Sbjct: 407 IEEETVKFATYLGIKVVSI--VGGQSIEEQGFKIRQG 441
>sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana
GN=RH20 PE=1 SV=1
Length = 501
Score = 94.4 bits (233), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 78/137 (56%), Gaps = 5/137 (3%)
Query: 114 CILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQ 173
+ ++ D + R+ I VEG D+P SFR + P+ ++ ++ G +PTPIQ Q
Sbjct: 69 AVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQ 128
Query: 174 GIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSREL 232
G P A+ GRD+IGIA TGSGKTL ++LP ++ Q P L G+GP L++ P+REL
Sbjct: 129 GWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQ----PMLAHGDGPIVLVLAPTREL 184
Query: 233 ARQTHDIIQYYCAALPI 249
A Q + ++ I
Sbjct: 185 AVQIQQEASKFGSSSKI 201
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 7/94 (7%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDII 66
RD+IGIA TGSGKTL ++LP ++ Q P L G+GP L++ P+RELA Q
Sbjct: 137 RDLIGIAETGSGKTLSYLLPAIVHVNAQ----PMLAHGDGPIVLVLAPTRELAVQIQQEA 192
Query: 67 QYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ ++ I TC+ GGVP + ++KG++
Sbjct: 193 SKFGSSSKIKT-TCI-YGGVPKGPQVRDLQKGVE 224
>sp|P93008|RH21_ARATH DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana
GN=RH21 PE=2 SV=1
Length = 733
Score = 94.0 bits (232), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 78/138 (56%), Gaps = 9/138 (6%)
Query: 105 IKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGI 164
+ W R + + ++ I R + I +G +P S+ KL L++A+E G
Sbjct: 275 VDRHWSDKR-LEEMTERDWRIFREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGY 333
Query: 165 KKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL----PGEG 220
KKP+PIQ+ IP L RD+IGIA TGSGKT FVLP+L + ++LP + EG
Sbjct: 334 KKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYI----SRLPPMSEENETEG 389
Query: 221 PYGLIICPSRELARQTHD 238
PY +++ P+RELA+Q +
Sbjct: 390 PYAVVMAPTRELAQQIEE 407
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 10/87 (11%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL----PGEGPYGLIICPSRELARQTH 63
RD+IGIA TGSGKT FVLP+L + ++LP + EGPY +++ P+RELA+Q
Sbjct: 351 RDVIGIAETGSGKTAAFVLPMLAYI----SRLPPMSEENETEGPYAVVMAPTRELAQQIE 406
Query: 64 DIIQYYCAALPIPLRTCLAIGGVPMNQ 90
+ + L R +GG + +
Sbjct: 407 EETVKFAHYL--GFRVTSIVGGQSIEE 431
>sp|Q1DP69|DBP2_COCIM ATP-dependent RNA helicase DBP2 OS=Coccidioides immitis (strain RS)
GN=DBP2 PE=3 SV=2
Length = 545
Score = 93.6 bits (231), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 70/113 (61%), Gaps = 5/113 (4%)
Query: 124 DIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRD 183
+ R+ + V G +VP +F P+ ++ ++A+G KPTPIQ QG P ALSGRD
Sbjct: 108 EAFRKEHEMTVYGKNVPRPVETFDEAGFPQYVISEVKAQGFAKPTPIQSQGWPMALSGRD 167
Query: 184 IIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGLIICPSRELARQ 235
++GIA TGSGKTL + LP ++ Q P L PG+GP L++ P+RELA Q
Sbjct: 168 VVGIAETGSGKTLTYCLPAIVHINAQ----PLLGPGDGPIVLVLAPTRELAVQ 216
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 7/94 (7%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGLIICPSRELARQTHDII 66
RD++GIA TGSGKTL + LP ++ Q P L PG+GP L++ P+RELA Q I
Sbjct: 166 RDVVGIAETGSGKTLTYCLPAIVHINAQ----PLLGPGDGPIVLVLAPTRELAVQIQAEI 221
Query: 67 QYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + I R GGVP + + +G++
Sbjct: 222 TKFGKSSRI--RNTCVYGGVPRGPQIRDLSRGVE 253
>sp|Q10MH8|RH24_ORYSJ DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa subsp.
japonica GN=Os03g0308500 PE=2 SV=1
Length = 770
Score = 93.6 bits (231), Expect = 1e-18, Method: Composition-based stats.
Identities = 53/111 (47%), Positives = 69/111 (62%), Gaps = 5/111 (4%)
Query: 128 RNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGI 187
++L I V G DVP SF P L+ A+ +G +KPT IQ Q +P LSGRDIIGI
Sbjct: 203 KSLAIRVSGFDVPRPIKSFADCGFPVQLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGI 262
Query: 188 AFTGSGKTLVFVLPILMFCLEQETKLPFLPG-EGPYGLIICPSRELARQTH 237
A TGSGKT FVLP+++ ++Q P L EGP G++ P+RELA Q +
Sbjct: 263 AKTGSGKTAAFVLPMIVHIMDQ----PELEKEEGPIGVVCAPTRELAHQIY 309
Score = 60.5 bits (145), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPG-EGPYGLIICPSRELARQTHD 64
+ RDIIGIA TGSGKT FVLP+++ ++Q P L EGP G++ P+RELA Q +
Sbjct: 255 SGRDIIGIAKTGSGKTAAFVLPMIVHIMDQ----PELEKEEGPIGVVCAPTRELAHQIY- 309
Query: 65 IIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
++ A P LR GGV +K G +
Sbjct: 310 -LEAKKFAKPYNLRVAAVYGGVSKFDQFKELKAGCE 344
>sp|Q5ADL0|PRP5_CANAL Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PRP5 PE=3
SV=1
Length = 884
Score = 93.6 bits (231), Expect = 1e-18, Method: Composition-based stats.
Identities = 59/148 (39%), Positives = 87/148 (58%), Gaps = 7/148 (4%)
Query: 90 QSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNL-RILVEGDDVPPACCSFRL 148
QS+D ++ Y + K +R + +L D+ ++IR++L I V+G DVP +
Sbjct: 240 QSIDHSQE--NYQEFRKVFYREAYELSALSDEQVELIRQDLDNIKVKGTDVPRPILKWSH 297
Query: 149 MKLPESLVRALEAK-GIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCL 207
+ LP +L + K +KP+ IQ Q +P LSGRD+IGIA TGSGKTL +VLP+L
Sbjct: 298 LALPTNLSSVIHDKLKFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQ 357
Query: 208 EQETKLPFLPGEGPYGLIICPSRELARQ 235
+Q+ +GP GLI+ P+RELA Q
Sbjct: 358 DQQFS---KDNQGPIGLILSPTRELALQ 382
Score = 65.9 bits (159), Expect = 3e-10, Method: Composition-based stats.
Identities = 39/98 (39%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT 62
T + RD+IGIA TGSGKTL +VLP+L +Q+ +GP GLI+ P+RELA Q
Sbjct: 327 TILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQFS---KDNQGPIGLILSPTRELALQI 383
Query: 63 HDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
I + LR C GG + ++ +KKG++
Sbjct: 384 EKEILNF-TKRNNNLRVCCCYGGSSIENQINELKKGVE 420
>sp|Q4TVV3|DDX46_DANRE Probable ATP-dependent RNA helicase DDX46 OS=Danio rerio GN=ddx46
PE=2 SV=1
Length = 1018
Score = 93.6 bits (231), Expect = 1e-18, Method: Composition-based stats.
Identities = 62/182 (34%), Positives = 93/182 (51%), Gaps = 7/182 (3%)
Query: 57 ELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLD-VIKKGIQYNDPIKTSW--RAPR 113
EL D ++Y + L+T L + L+ V + IQY +P + ++ P
Sbjct: 251 ELMENDQDAMEYSSEEEEVDLQTALTGFQTKQRKVLEPVDHQKIQY-EPFRKNFYVEVPE 309
Query: 114 CILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQ 173
P++V + I V+G P ++ + ++ AL+ +KPTPIQ Q
Sbjct: 310 LARMSPEEVSEYRLELEGISVKGKGCPKPIKTWVQCGISMKVLNALKKHNYEKPTPIQAQ 369
Query: 174 GIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELA 233
IPA +SGRD+IGIA TGSGKT+ F+LP+ L+Q P EGP +I+ P+RELA
Sbjct: 370 AIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQR---PVGEAEGPLAVIMTPTRELA 426
Query: 234 RQ 235
Q
Sbjct: 427 LQ 428
Score = 63.5 bits (153), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT+ F+LP+ L+Q P EGP +I+ P+RELA Q
Sbjct: 376 SGRDLIGIAKTGSGKTIAFLLPMFRHILDQR---PVGEAEGPLAVIMTPTRELALQITKE 432
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + +L LR GG +++ + +K+G +
Sbjct: 433 CKKFSKSL--ALRVVCVYGGTGISEQIAELKRGAE 465
>sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegicus
GN=Ddx46 PE=1 SV=1
Length = 1032
Score = 93.6 bits (231), Expect = 1e-18, Method: Composition-based stats.
Identities = 60/183 (32%), Positives = 97/183 (53%), Gaps = 9/183 (4%)
Query: 57 ELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKG-IQYNDPIKTSW--RAPR 113
EL D ++Y + L+T L + L+ + G I+Y +P + ++ P
Sbjct: 283 ELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGKIEY-EPFRKNFYVEVPE 341
Query: 114 CILSLPDQVHDIIRRNLR-ILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQV 172
+ + + ++ R + I V+G P S+ + ++ +L+ G +KPTPIQ
Sbjct: 342 -LAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQT 400
Query: 173 QGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSREL 232
Q IPA +SGRD+IGIA TGSGKT+ F+LP+ ++Q + GEGP +I+ P+REL
Sbjct: 401 QAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS---LEEGEGPIAVIMTPTREL 457
Query: 233 ARQ 235
A Q
Sbjct: 458 ALQ 460
Score = 62.0 bits (149), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT+ F+LP+ ++Q + GEGP +I+ P+RELA Q
Sbjct: 408 SGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS---LEEGEGPIAVIMTPTRELALQITKE 464
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + L LR GG +++ + +K+G +
Sbjct: 465 CKKFSKTL--GLRVVCVYGGTGISEQIAELKRGAE 497
>sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46 OS=Pongo abelii GN=DDX46
PE=2 SV=1
Length = 1032
Score = 93.6 bits (231), Expect = 1e-18, Method: Composition-based stats.
Identities = 60/183 (32%), Positives = 97/183 (53%), Gaps = 9/183 (4%)
Query: 57 ELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKG-IQYNDPIKTSW--RAPR 113
EL D ++Y + L+T L + L+ + G I+Y +P + ++ P
Sbjct: 283 ELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGKIEY-EPFRKNFYVEVPE 341
Query: 114 CILSLPDQVHDIIRRNLR-ILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQV 172
+ + + ++ R + I V+G P S+ + ++ +L+ G +KPTPIQ
Sbjct: 342 -LAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQT 400
Query: 173 QGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSREL 232
Q IPA +SGRD+IGIA TGSGKT+ F+LP+ ++Q + GEGP +I+ P+REL
Sbjct: 401 QAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS---LEEGEGPIAVIMTPTREL 457
Query: 233 ARQ 235
A Q
Sbjct: 458 ALQ 460
Score = 62.0 bits (149), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT+ F+LP+ ++Q + GEGP +I+ P+RELA Q
Sbjct: 408 SGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS---LEEGEGPIAVIMTPTRELALQITKE 464
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + L LR GG +++ + +K+G +
Sbjct: 465 CKKFSKTL--GLRVVCVYGGTGISEQIAELKRGAE 497
>sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46 OS=Mus musculus GN=Ddx46
PE=1 SV=2
Length = 1032
Score = 93.6 bits (231), Expect = 1e-18, Method: Composition-based stats.
Identities = 60/183 (32%), Positives = 97/183 (53%), Gaps = 9/183 (4%)
Query: 57 ELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKG-IQYNDPIKTSW--RAPR 113
EL D ++Y + L+T L + L+ + G I+Y +P + ++ P
Sbjct: 283 ELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGKIEY-EPFRKNFYVEVPE 341
Query: 114 CILSLPDQVHDIIRRNLR-ILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQV 172
+ + + ++ R + I V+G P S+ + ++ +L+ G +KPTPIQ
Sbjct: 342 -LAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQT 400
Query: 173 QGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSREL 232
Q IPA +SGRD+IGIA TGSGKT+ F+LP+ ++Q + GEGP +I+ P+REL
Sbjct: 401 QAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS---LEEGEGPIAVIMTPTREL 457
Query: 233 ARQ 235
A Q
Sbjct: 458 ALQ 460
Score = 62.0 bits (149), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT+ F+LP+ ++Q + GEGP +I+ P+RELA Q
Sbjct: 408 SGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS---LEEGEGPIAVIMTPTRELALQITKE 464
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + L LR GG +++ + +K+G +
Sbjct: 465 CKKFSKTL--GLRVVCVYGGTGISEQIAELKRGAE 497
>sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46 OS=Homo sapiens GN=DDX46
PE=1 SV=2
Length = 1031
Score = 93.6 bits (231), Expect = 1e-18, Method: Composition-based stats.
Identities = 60/183 (32%), Positives = 97/183 (53%), Gaps = 9/183 (4%)
Query: 57 ELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKG-IQYNDPIKTSW--RAPR 113
EL D ++Y + L+T L + L+ + G I+Y +P + ++ P
Sbjct: 283 ELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGKIEY-EPFRKNFYVEVPE 341
Query: 114 CILSLPDQVHDIIRRNLR-ILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQV 172
+ + + ++ R + I V+G P S+ + ++ +L+ G +KPTPIQ
Sbjct: 342 -LAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQT 400
Query: 173 QGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSREL 232
Q IPA +SGRD+IGIA TGSGKT+ F+LP+ ++Q + GEGP +I+ P+REL
Sbjct: 401 QAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS---LEEGEGPIAVIMTPTREL 457
Query: 233 ARQ 235
A Q
Sbjct: 458 ALQ 460
Score = 62.0 bits (149), Expect = 4e-09, Method: Composition-based stats.
Identities = 34/95 (35%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT+ F+LP+ ++Q + GEGP +I+ P+RELA Q
Sbjct: 408 SGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS---LEEGEGPIAVIMTPTRELALQITKE 464
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + L LR GG +++ + +K+G +
Sbjct: 465 CKKFSKTL--GLRVVCVYGGTGISEQIAELKRGAE 497
>sp|Q54IV3|DDX42_DICDI Probable ATP-dependent RNA helicase ddx42 OS=Dictyostelium
discoideum GN=ddx42 PE=3 SV=1
Length = 986
Score = 93.2 bits (230), Expect = 1e-18, Method: Composition-based stats.
Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 5/113 (4%)
Query: 126 IRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDII 185
IR+NL I + G D+ SF + L++A+ + I+ PTPIQ Q IP ALSGRD+I
Sbjct: 287 IRKNLDIRMTGTDLINPVTSFGHYGFDDILLQAIAKQSIETPTPIQKQAIPIALSGRDLI 346
Query: 186 GIAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGLIICPSRELARQTH 237
IA TGSGKT F+ P + ++Q P+L G+GP L + P+RELA Q +
Sbjct: 347 AIAKTGSGKTATFIWPSISHIMDQ----PYLEKGDGPIALFLAPTRELAHQIY 395
Score = 57.8 bits (138), Expect = 8e-08, Method: Composition-based stats.
Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGLIICPSRELARQTH- 63
+ RD+I IA TGSGKT F+ P + ++Q P+L G+GP L + P+RELA Q +
Sbjct: 341 SGRDLIAIAKTGSGKTATFIWPSISHIMDQ----PYLEKGDGPIALFLAPTRELAHQIYL 396
Query: 64 DIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ ++Y + L+T + GGV Q +K G +
Sbjct: 397 ETLKY---SKYFKLKTTVLYGGVSKQQQCKELKAGCE 430
>sp|Q61656|DDX5_MOUSE Probable ATP-dependent RNA helicase DDX5 OS=Mus musculus GN=Ddx5
PE=1 SV=2
Length = 614
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 73/129 (56%), Gaps = 5/129 (3%)
Query: 124 DIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRD 183
D RR+ I V G + P +F P +++ + + +PT IQ QG P ALSG D
Sbjct: 74 DTYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLD 133
Query: 184 IIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQY 242
++G+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q +
Sbjct: 134 MVGVAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQVAAE 189
Query: 243 YCAALPIGS 251
YC A + S
Sbjct: 190 YCRACRLKS 198
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 7/93 (7%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQ 67
D++G+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q +
Sbjct: 133 DMVGVAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQVAA 188
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
YC A + TC+ GG P + +++G++
Sbjct: 189 EYCRACRLK-STCI-YGGAPKGPQIRDLERGVE 219
>sp|A4QSS5|DBP2_MAGO7 ATP-dependent RNA helicase DBP2 OS=Magnaporthe oryzae (strain 70-15
/ ATCC MYA-4617 / FGSC 8958) GN=DBP2 PE=3 SV=1
Length = 548
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 72/127 (56%), Gaps = 5/127 (3%)
Query: 124 DIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRD 183
D RR + V+G DVP +F P ++ ++A+G PT IQ QG P ALSGRD
Sbjct: 105 DKFRREHSMAVQGSDVPKPVETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRD 164
Query: 184 IIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGLIICPSRELARQTHDIIQY 242
++GIA TGSGKTL + LP ++ Q P L PG+GP LI+ P+RELA Q I
Sbjct: 165 VVGIAETGSGKTLTYCLPAIVHINAQ----PLLAPGDGPIVLILAPTRELAVQIQAEISK 220
Query: 243 YCAALPI 249
+ + I
Sbjct: 221 FGKSSRI 227
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 7/96 (7%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGLIICPSRELARQTHD 64
+ RD++GIA TGSGKTL + LP ++ Q P L PG+GP LI+ P+RELA Q
Sbjct: 161 SGRDVVGIAETGSGKTLTYCLPAIVHINAQ----PLLAPGDGPIVLILAPTRELAVQIQA 216
Query: 65 IIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
I + + I R GGVP + + +G++
Sbjct: 217 EISKFGKSSRI--RNTCVYGGVPKGPQIRDLSRGVE 250
>sp|Q1DMX8|PRP28_COCIM Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Coccidioides
immitis (strain RS) GN=PRP28 PE=3 SV=2
Length = 820
Score = 92.8 bits (229), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/125 (36%), Positives = 73/125 (58%), Gaps = 2/125 (1%)
Query: 125 IIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDI 184
I + + I +G +P S+ LP+ L+ ++ G K P+PIQ IP AL RD+
Sbjct: 361 IFKEDFNISTKGGSIPNPMRSWGESGLPKRLLEIIDKVGYKDPSPIQRAAIPIALQNRDL 420
Query: 185 IGIAFTGSGKTLVFVLPILMFCLE--QETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 242
IG+A TGSGKT F+LP+L++ E + + + +GPY +I+ P+RELA+Q + +
Sbjct: 421 IGVAVTGSGKTAAFLLPLLVYIAELPRLDEFEWRKSDGPYAIILAPTRELAQQIENEARK 480
Query: 243 YCAAL 247
+C L
Sbjct: 481 FCNPL 485
Score = 65.9 bits (159), Expect = 2e-10, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 24/140 (17%)
Query: 7 SRDIIGIAFTGSGKTLVFVLPILMFCLE--QETKLPFLPGEGPYGLIICPSRELARQTHD 64
+RD+IG+A TGSGKT F+LP+L++ E + + + +GPY +I+ P+RELA+Q +
Sbjct: 417 NRDLIGVAVTGSGKTAAFLLPLLVYIAELPRLDEFEWRKSDGPYAIILAPTRELAQQIEN 476
Query: 65 IIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHD 124
+ +C P+ +GG + + ++ G + I++ P ++ D
Sbjct: 477 EARKFCN--PLGFNVVSIVGGHSLEEQSFSLRNGAE-------------IIIATPGRLVD 521
Query: 125 IIRRNLRILVEGDDVPPACC 144
I R + +L + CC
Sbjct: 522 CIERRILVLSQ-------CC 534
>sp|Q6FLF3|DBP2_CANGA ATP-dependent RNA helicase DBP2 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DBP2 PE=3 SV=1
Length = 544
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 9/135 (6%)
Query: 114 CILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQ 173
+ + DQ R+ + + G D+P +F P+ +++ ++A+G KPT IQ Q
Sbjct: 80 VVRNRSDQEVAQFRKESEMTITGHDIPKPITTFDEAGFPDYVLKEVKAEGFDKPTSIQCQ 139
Query: 174 GIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGLIICPSREL 232
G P ALSGRD++GIA TGSGKTL + LP ++ Q P L PG+GP L++ P+REL
Sbjct: 140 GWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQ----PLLSPGDGPIVLVLAPTREL 195
Query: 233 ARQTHDIIQYYCAAL 247
A Q IQ C+
Sbjct: 196 AVQ----IQKECSKF 206
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 53/96 (55%), Gaps = 11/96 (11%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGLIICPSRELARQTHDII 66
RD++GIA TGSGKTL + LP ++ Q P L PG+GP L++ P+RELA Q I
Sbjct: 148 RDMVGIAATGSGKTLSYCLPGIVHINAQ----PLLSPGDGPIVLVLAPTRELAVQ----I 199
Query: 67 QYYCAAL--PIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
Q C+ +R GGVP Q + + +G +
Sbjct: 200 QKECSKFGKSSRIRNTCVYGGVPRGQQIRELIRGAE 235
>sp|Q501J6|DDX17_MOUSE Probable ATP-dependent RNA helicase DDX17 OS=Mus musculus GN=Ddx17
PE=2 SV=1
Length = 650
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 75/128 (58%), Gaps = 8/128 (6%)
Query: 124 DIIRRNLRILVEGDDV-PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGR 182
D +RR I V G DV P +F P+ ++ L + +PTPIQ QG P ALSGR
Sbjct: 71 DELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGR 130
Query: 183 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQ 241
D++GIA TGSGKTL ++LP ++ Q P+L G+GP L++ P+RELA+Q +
Sbjct: 131 DMVGIAQTGSGKTLAYLLPAIVHINHQ----PYLERGDGPICLVLAPTRELAQQVQQVAD 186
Query: 242 YY--CAAL 247
Y C+ L
Sbjct: 187 DYGKCSRL 194
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 58/98 (59%), Gaps = 11/98 (11%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHD 64
+ RD++GIA TGSGKTL ++LP ++ Q P+L G+GP L++ P+RELA+Q
Sbjct: 128 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQ----PYLERGDGPICLVLAPTRELAQQVQQ 183
Query: 65 IIQYY--CAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ Y C+ L TC+ GG P + +++G++
Sbjct: 184 VADDYGKCSRLK---STCI-YGGAPKGPQIRDLERGVE 217
>sp|Q92841|DDX17_HUMAN Probable ATP-dependent RNA helicase DDX17 OS=Homo sapiens GN=DDX17
PE=1 SV=2
Length = 729
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 72/122 (59%), Gaps = 6/122 (4%)
Query: 124 DIIRRNLRILVEGDDV-PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGR 182
D +RR I V G DV P +F P+ ++ L + +PTPIQ QG P ALSGR
Sbjct: 150 DELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGR 209
Query: 183 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQ 241
D++GIA TGSGKTL ++LP ++ Q P+L G+GP L++ P+RELA+Q +
Sbjct: 210 DMVGIAQTGSGKTLAYLLPAIVHINHQ----PYLERGDGPICLVLAPTRELAQQVQQVAD 265
Query: 242 YY 243
Y
Sbjct: 266 DY 267
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 58/98 (59%), Gaps = 11/98 (11%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHD 64
+ RD++GIA TGSGKTL ++LP ++ Q P+L G+GP L++ P+RELA+Q
Sbjct: 207 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQ----PYLERGDGPICLVLAPTRELAQQVQQ 262
Query: 65 IIQYY--CAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ Y C+ L TC+ GG P + +++G++
Sbjct: 263 VADDYGKCSRLK---STCI-YGGAPKGPQIRDLERGVE 296
>sp|Q4IP34|PRP5_GIBZE Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Gibberella
zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL
31084) GN=PRP5 PE=3 SV=2
Length = 1207
Score = 92.0 bits (227), Expect = 3e-18, Method: Composition-based stats.
Identities = 55/137 (40%), Positives = 77/137 (56%), Gaps = 5/137 (3%)
Query: 103 DPI-KTSWRAPRCILSLPD-QVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160
+PI K W P + L + +V D+ I V G DVP + L + ++
Sbjct: 534 EPIRKNFWHEPAELSLLTEAEVADLRLELDGIKVNGKDVPKPVQKWAQCGLTRQTLDVVD 593
Query: 161 AKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEG 220
G +KPTPIQ+Q +PA +SGRD+IG+A TGSGKT+ F+LP+ +Q P +G
Sbjct: 594 NLGYEKPTPIQMQALPALMSGRDVIGVAKTGSGKTVAFLLPMFRHIKDQP---PLKDTDG 650
Query: 221 PYGLIICPSRELARQTH 237
P GLI+ P+RELA Q H
Sbjct: 651 PIGLIMTPTRELAVQIH 667
Score = 67.4 bits (163), Expect = 9e-11, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IG+A TGSGKT+ F+LP+ +Q P +GP GLI+ P+RELA Q H
Sbjct: 613 SGRDVIGVAKTGSGKTVAFLLPMFRHIKDQP---PLKDTDGPIGLIMTPTRELAVQIHKD 669
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + + LR A GG P+ + + +K+G +
Sbjct: 670 CKPFLKMM--GLRAVCAYGGAPIREQIAELKRGAE 702
>sp|P0CQ98|PRP5_CRYNJ Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Cryptococcus
neoformans var. neoformans serotype D (strain JEC21 /
ATCC MYA-565) GN=PRP5 PE=3 SV=1
Length = 1072
Score = 92.0 bits (227), Expect = 3e-18, Method: Composition-based stats.
Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Query: 99 IQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLR-ILVEGDDVPPACCSFRLMKLPESLVR 157
I Y K + P +L + ++ +++R + I + G D P ++ LP+ +
Sbjct: 357 IDYEPFRKAFYVPPVEVLEMDEEEAELVRLEMDGIKIRGQDAPKPVRNWGAFGLPQGCLD 416
Query: 158 ALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP 217
++ +G + PT IQ Q IPA +SGRD+IGIA TGSGKT+ F+LP+L +Q P
Sbjct: 417 VIKHQGWETPTSIQAQAIPAIMSGRDVIGIAKTGSGKTVAFLLPMLRHVRDQR---PVSG 473
Query: 218 GEGPYGLIICPSRELARQTHDIIQYYCAALPI 249
EGP +++ P+RELA Q + Q + L I
Sbjct: 474 SEGPIAVVMSPTRELASQIYKECQPFLKVLNI 505
Score = 65.5 bits (158), Expect = 4e-10, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT+ F+LP+L +Q P EGP +++ P+RELA Q +
Sbjct: 439 SGRDVIGIAKTGSGKTVAFLLPMLRHVRDQR---PVSGSEGPIAVVMSPTRELASQIYKE 495
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
Q + L I C +GG +++ + +KKG +
Sbjct: 496 CQPFLKVLNIRASCC--VGGSSISEDIAAMKKGAE 528
>sp|P0CQ99|PRP5_CRYNB Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Cryptococcus
neoformans var. neoformans serotype D (strain B-3501A)
GN=PRP5 PE=3 SV=1
Length = 1072
Score = 92.0 bits (227), Expect = 3e-18, Method: Composition-based stats.
Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Query: 99 IQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLR-ILVEGDDVPPACCSFRLMKLPESLVR 157
I Y K + P +L + ++ +++R + I + G D P ++ LP+ +
Sbjct: 357 IDYEPFRKAFYVPPVEVLEMDEEEAELVRLEMDGIKIRGQDAPKPVRNWGAFGLPQGCLD 416
Query: 158 ALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP 217
++ +G + PT IQ Q IPA +SGRD+IGIA TGSGKT+ F+LP+L +Q P
Sbjct: 417 VIKHQGWETPTSIQAQAIPAIMSGRDVIGIAKTGSGKTVAFLLPMLRHVRDQR---PVSG 473
Query: 218 GEGPYGLIICPSRELARQTHDIIQYYCAALPI 249
EGP +++ P+RELA Q + Q + L I
Sbjct: 474 SEGPIAVVMSPTRELASQIYKECQPFLKVLNI 505
Score = 65.5 bits (158), Expect = 4e-10, Method: Composition-based stats.
Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT+ F+LP+L +Q P EGP +++ P+RELA Q +
Sbjct: 439 SGRDVIGIAKTGSGKTVAFLLPMLRHVRDQR---PVSGSEGPIAVVMSPTRELASQIYKE 495
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
Q + L I C +GG +++ + +KKG +
Sbjct: 496 CQPFLKVLNIRASCC--VGGSSISEDIAAMKKGAE 528
>sp|Q9P7C7|PRP11_SCHPO Pre-mRNA-processing ATP-dependent RNA helicase prp11
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=prp11 PE=3 SV=1
Length = 1014
Score = 92.0 bits (227), Expect = 3e-18, Method: Composition-based stats.
Identities = 54/138 (39%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
Query: 99 IQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLR-ILVEGDDVPPACCSFRLMKLPESLVR 157
I Y D K + P + +L D +R +L I + G D P S+ L +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 158 ALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP 217
+ + G +KPT IQ Q IPA SGRD+IG+A TGSGKT+ F+LP+ +Q P
Sbjct: 432 VINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQR---PLKT 488
Query: 218 GEGPYGLIICPSRELARQ 235
GEGP +I+ P+RELA Q
Sbjct: 489 GEGPIAIIMTPTRELAVQ 506
Score = 70.5 bits (171), Expect = 1e-11, Method: Composition-based stats.
Identities = 57/185 (30%), Positives = 90/185 (48%), Gaps = 23/185 (12%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IG+A TGSGKT+ F+LP+ +Q P GEGP +I+ P+RELA Q
Sbjct: 454 SGRDVIGVAKTGSGKTIAFLLPMFRHIKDQR---PLKTGEGPIAIIMTPTRELAVQIFRE 510
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDI 125
+ + L I R C A GG P+ + +K+G + + T R + + +V ++
Sbjct: 511 CKPFLKLLNI--RACCAYGGAPIKDQIADLKRGAEI--VVCTPGRMIDVLSANAGRVTNL 566
Query: 126 IRRNLRILVEGDDVPPACCSFRLMKL-----PE--------SLVRALEA---KGIKKPTP 169
R +L E D + ++M++ P+ + RA+EA K +KKP
Sbjct: 567 HRCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVE 626
Query: 170 IQVQG 174
I V G
Sbjct: 627 ITVGG 631
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.145 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,671,544
Number of Sequences: 539616
Number of extensions: 4407442
Number of successful extensions: 17240
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 117
Number of HSP's that attempted gapping in prelim test: 13005
Number of HSP's gapped (non-prelim): 2446
length of query: 252
length of database: 191,569,459
effective HSP length: 115
effective length of query: 137
effective length of database: 129,513,619
effective search space: 17743365803
effective search space used: 17743365803
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)