Query psy7786
Match_columns 252
No_of_seqs 219 out of 2318
Neff 9.9
Searched_HMMs 46136
Date Fri Aug 16 18:49:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7786.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7786hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0331|consensus 100.0 3.1E-37 6.7E-42 264.1 11.9 221 1-250 122-372 (519)
2 KOG0330|consensus 100.0 1.4E-34 3E-39 235.2 6.6 205 1-244 92-324 (476)
3 COG0513 SrmB Superfamily II DN 100.0 3.6E-33 7.9E-38 246.4 10.1 217 1-244 60-297 (513)
4 KOG0342|consensus 100.0 1.6E-31 3.4E-36 223.1 11.6 210 1-241 113-351 (543)
5 KOG0335|consensus 100.0 6.2E-31 1.3E-35 222.1 14.9 230 1-244 105-361 (482)
6 KOG0348|consensus 100.0 8.2E-31 1.8E-35 220.8 14.4 166 1-180 168-342 (708)
7 KOG0338|consensus 100.0 6E-32 1.3E-36 226.5 6.1 157 1-179 212-368 (691)
8 KOG0345|consensus 100.0 1.3E-30 2.8E-35 216.6 11.5 224 1-247 37-282 (567)
9 KOG0328|consensus 100.0 4.1E-32 8.8E-37 212.7 1.7 203 1-242 58-288 (400)
10 KOG0343|consensus 100.0 1.3E-30 2.7E-35 220.4 6.8 217 1-251 100-344 (758)
11 KOG0341|consensus 100.0 3.8E-30 8.3E-35 209.6 8.5 225 1-240 201-441 (610)
12 KOG0346|consensus 100.0 2.7E-29 5.9E-34 207.3 11.7 214 1-244 50-292 (569)
13 KOG0333|consensus 100.0 3.3E-30 7.2E-35 216.7 5.0 151 1-165 276-427 (673)
14 KOG0340|consensus 100.0 3.1E-29 6.8E-34 202.0 8.9 209 1-245 38-279 (442)
15 KOG0326|consensus 100.0 1E-29 2.2E-34 202.4 4.7 205 1-244 116-346 (459)
16 PTZ00110 helicase; Provisional 100.0 4.5E-28 9.8E-33 215.9 14.2 145 1-162 161-305 (545)
17 PRK04837 ATP-dependent RNA hel 100.0 2.2E-28 4.7E-33 212.9 10.3 147 1-162 39-185 (423)
18 KOG0339|consensus 99.9 4E-28 8.7E-33 203.6 7.6 144 1-161 254-397 (731)
19 PRK04537 ATP-dependent RNA hel 99.9 1.1E-27 2.3E-32 214.3 10.2 147 1-162 40-187 (572)
20 PRK11776 ATP-dependent RNA hel 99.9 1.3E-27 2.8E-32 210.2 10.3 206 1-244 35-266 (460)
21 KOG0336|consensus 99.9 1.6E-27 3.5E-32 195.5 7.8 211 1-240 251-485 (629)
22 KOG0334|consensus 99.9 3.9E-27 8.5E-32 212.3 10.5 214 1-244 396-637 (997)
23 PRK10590 ATP-dependent RNA hel 99.9 3.1E-27 6.8E-32 207.2 9.6 146 1-162 32-177 (456)
24 COG1201 Lhr Lhr-like helicases 99.9 6.1E-27 1.3E-31 211.2 10.1 229 1-251 31-285 (814)
25 PRK11634 ATP-dependent RNA hel 99.9 7.2E-27 1.6E-31 210.3 10.5 141 1-162 37-177 (629)
26 PRK11192 ATP-dependent RNA hel 99.9 8.9E-27 1.9E-31 203.5 9.9 213 1-243 32-268 (434)
27 PLN00206 DEAD-box ATP-dependen 99.9 8.3E-27 1.8E-31 207.0 9.8 147 1-162 152-298 (518)
28 PRK01297 ATP-dependent RNA hel 99.9 2E-26 4.4E-31 203.2 11.0 147 1-162 118-265 (475)
29 KOG0337|consensus 99.9 2E-26 4.2E-31 189.5 7.7 207 1-244 52-285 (529)
30 KOG0347|consensus 99.9 4.9E-26 1.1E-30 192.7 7.5 150 1-163 212-369 (731)
31 TIGR03817 DECH_helic helicase/ 99.9 4.4E-25 9.6E-30 202.3 13.9 130 1-155 45-177 (742)
32 KOG0350|consensus 99.9 1.4E-25 3E-30 188.1 8.9 123 2-138 178-304 (620)
33 KOG0341|consensus 99.9 9.3E-24 2E-28 172.5 9.5 158 90-247 116-273 (610)
34 KOG0327|consensus 99.9 5.3E-24 1.2E-28 173.6 6.7 209 1-245 57-288 (397)
35 PRK13767 ATP-dependent helicas 99.9 6.5E-23 1.4E-27 191.4 12.9 129 1-138 41-181 (876)
36 PTZ00424 helicase 45; Provisio 99.9 8.5E-23 1.9E-27 176.9 9.1 139 1-161 59-197 (401)
37 KOG0332|consensus 99.9 5.5E-23 1.2E-27 167.0 6.8 206 7-249 129-359 (477)
38 PRK09751 putative ATP-dependen 99.9 9.5E-22 2.1E-26 187.8 12.6 120 12-138 1-133 (1490)
39 KOG4284|consensus 99.9 2.3E-23 5E-28 179.6 1.4 208 1-242 56-294 (980)
40 KOG0329|consensus 99.9 5E-23 1.1E-27 159.8 1.6 208 1-233 73-296 (387)
41 COG1205 Distinct helicase fami 99.9 7E-21 1.5E-25 175.8 14.6 121 3-138 81-204 (851)
42 TIGR02621 cas3_GSU0051 CRISPR- 99.8 2.6E-21 5.6E-26 175.8 9.9 212 1-243 24-295 (844)
43 PRK09401 reverse gyrase; Revie 99.8 8.2E-20 1.8E-24 173.5 12.7 132 1-160 89-239 (1176)
44 PRK02362 ski2-like helicase; P 99.8 1.7E-19 3.6E-24 166.8 11.2 128 4-160 36-163 (737)
45 PRK14701 reverse gyrase; Provi 99.8 1.6E-19 3.5E-24 175.2 11.1 132 1-157 88-234 (1638)
46 KOG0344|consensus 99.8 1.8E-19 3.9E-24 154.4 9.9 215 1-241 167-408 (593)
47 PRK00254 ski2-like helicase; P 99.8 1.1E-18 2.3E-23 161.1 14.6 131 4-162 36-166 (720)
48 TIGR01054 rgy reverse gyrase. 99.8 5.2E-19 1.1E-23 168.3 12.8 129 1-155 87-231 (1171)
49 TIGR00614 recQ_fam ATP-depende 99.8 2.4E-18 5.1E-23 151.7 13.8 119 1-150 20-143 (470)
50 PRK12899 secA preprotein trans 99.8 5.3E-19 1.1E-23 160.8 6.4 117 1-138 101-224 (970)
51 PRK01172 ski2-like helicase; P 99.8 4.2E-18 9E-23 156.3 12.0 129 2-159 32-160 (674)
52 PTZ00110 helicase; Provisional 99.8 1.2E-17 2.7E-22 149.2 14.6 136 112-250 97-233 (545)
53 PLN03137 ATP-dependent DNA hel 99.7 1.3E-17 2.8E-22 154.7 12.4 124 1-155 469-604 (1195)
54 PLN00206 DEAD-box ATP-dependen 99.7 3E-17 6.4E-22 146.2 14.0 136 114-250 91-226 (518)
55 KOG0330|consensus 99.7 1.5E-17 3.3E-22 136.3 9.1 99 144-250 61-159 (476)
56 cd00268 DEADc DEAD-box helicas 99.7 6.8E-18 1.5E-22 132.9 6.9 139 2-160 31-169 (203)
57 TIGR00580 mfd transcription-re 99.7 1.1E-16 2.3E-21 149.2 14.5 107 7-138 472-582 (926)
58 KOG0333|consensus 99.7 1.5E-17 3.2E-22 141.0 8.0 138 113-250 214-352 (673)
59 KOG0349|consensus 99.7 5.4E-18 1.2E-22 140.8 4.6 96 48-155 288-384 (725)
60 COG1204 Superfamily II helicas 99.7 9.3E-17 2E-21 146.9 12.8 113 3-138 43-155 (766)
61 PRK10917 ATP-dependent DNA hel 99.7 2.8E-17 6.1E-22 150.3 8.1 106 8-138 283-392 (681)
62 KOG0346|consensus 99.7 6.5E-17 1.4E-21 134.5 9.4 103 144-248 19-121 (569)
63 KOG0331|consensus 99.7 7.8E-17 1.7E-21 139.1 9.8 105 145-251 92-196 (519)
64 KOG0339|consensus 99.7 7.4E-17 1.6E-21 136.3 8.7 139 110-251 189-327 (731)
65 KOG0334|consensus 99.7 9.1E-17 2E-21 145.9 9.8 134 114-250 334-468 (997)
66 PRK10689 transcription-repair 99.7 2.1E-16 4.5E-21 150.3 12.0 106 8-138 622-731 (1147)
67 PRK11057 ATP-dependent DNA hel 99.7 8E-16 1.7E-20 139.3 14.8 123 1-155 34-162 (607)
68 KOG0340|consensus 99.7 1.1E-16 2.3E-21 129.9 7.9 100 143-250 6-105 (442)
69 TIGR01389 recQ ATP-dependent D 99.7 9.5E-16 2.1E-20 138.9 14.7 111 1-138 22-136 (591)
70 PF00270 DEAD: DEAD/DEAH box h 99.7 1.5E-17 3.2E-22 127.0 2.0 137 2-161 9-146 (169)
71 TIGR00643 recG ATP-dependent D 99.7 1.4E-15 2.9E-20 138.4 14.4 105 9-138 258-366 (630)
72 KOG0338|consensus 99.7 2.1E-16 4.4E-21 133.7 7.5 101 144-249 181-281 (691)
73 PHA02653 RNA helicase NPH-II; 99.7 6.2E-16 1.4E-20 139.7 11.0 118 1-138 173-300 (675)
74 COG1202 Superfamily II helicas 99.6 7.4E-16 1.6E-20 132.2 9.8 207 4-242 229-462 (830)
75 PRK11664 ATP-dependent RNA hel 99.6 6.9E-16 1.5E-20 142.6 8.2 109 3-138 16-125 (812)
76 PRK04837 ATP-dependent RNA hel 99.6 5.1E-15 1.1E-19 129.1 12.1 106 144-250 8-113 (423)
77 COG0513 SrmB Superfamily II DN 99.6 5.4E-15 1.2E-19 131.2 11.7 101 144-250 29-130 (513)
78 TIGR01587 cas3_core CRISPR-ass 99.6 1.6E-14 3.5E-19 123.4 12.9 52 9-69 1-52 (358)
79 KOG0348|consensus 99.6 6.3E-15 1.4E-19 125.5 10.1 103 144-248 136-239 (708)
80 TIGR01970 DEAH_box_HrpB ATP-de 99.6 8.2E-15 1.8E-19 135.4 11.1 109 3-138 13-122 (819)
81 TIGR03158 cas3_cyano CRISPR-as 99.6 5.2E-14 1.1E-18 119.8 14.0 69 3-85 8-80 (357)
82 KOG0335|consensus 99.6 5.7E-15 1.2E-19 125.8 7.7 120 132-251 62-183 (482)
83 PRK04537 ATP-dependent RNA hel 99.6 2.5E-14 5.4E-19 128.5 12.1 105 145-250 10-114 (572)
84 KOG0952|consensus 99.6 3.8E-14 8.2E-19 128.8 12.8 124 3-138 122-247 (1230)
85 PRK10590 ATP-dependent RNA hel 99.6 2.2E-14 4.9E-19 126.1 11.1 104 145-250 2-105 (456)
86 PRK12898 secA preprotein trans 99.6 8.4E-15 1.8E-19 130.9 7.6 84 1-101 112-195 (656)
87 PRK09200 preprotein translocas 99.5 1.4E-14 3E-19 132.1 9.0 115 2-138 88-208 (790)
88 PRK11776 ATP-dependent RNA hel 99.5 6E-14 1.3E-18 123.7 11.9 96 144-247 4-99 (460)
89 KOG0347|consensus 99.5 6.8E-15 1.5E-19 125.7 5.0 109 142-250 179-293 (731)
90 TIGR00963 secA preprotein tran 99.5 1.1E-14 2.4E-19 131.1 6.6 112 3-138 67-185 (745)
91 PRK11192 ATP-dependent RNA hel 99.5 1.3E-13 2.7E-18 120.8 12.0 102 145-250 2-103 (434)
92 KOG0345|consensus 99.5 1.3E-13 2.7E-18 116.0 11.2 100 145-247 5-106 (567)
93 PRK11634 ATP-dependent RNA hel 99.5 1.2E-13 2.5E-18 125.2 11.9 96 144-247 6-101 (629)
94 PRK13104 secA preprotein trans 99.5 1.2E-14 2.7E-19 132.6 5.4 107 11-138 99-211 (896)
95 KOG0328|consensus 99.5 9.8E-15 2.1E-19 115.4 4.0 102 141-250 24-125 (400)
96 KOG0342|consensus 99.5 1.2E-13 2.6E-18 116.7 9.2 101 143-247 81-181 (543)
97 PRK01297 ATP-dependent RNA hel 99.5 3E-13 6.5E-18 119.7 12.1 106 143-249 86-191 (475)
98 TIGR03714 secA2 accessory Sec 99.5 7.8E-14 1.7E-18 126.3 7.5 113 7-138 83-204 (762)
99 KOG0343|consensus 99.4 2.5E-13 5.3E-18 116.3 7.9 101 144-248 69-169 (758)
100 KOG0344|consensus 99.4 5.4E-13 1.2E-17 115.0 9.6 117 125-244 113-233 (593)
101 KOG0326|consensus 99.4 6.1E-14 1.3E-18 112.7 2.3 99 144-250 85-183 (459)
102 PTZ00424 helicase 45; Provisio 99.4 1.5E-12 3.3E-17 112.9 11.2 98 144-249 28-125 (401)
103 KOG0337|consensus 99.4 5.6E-13 1.2E-17 110.8 7.6 100 144-250 21-120 (529)
104 KOG0336|consensus 99.4 1.2E-12 2.6E-17 108.6 6.6 103 139-243 214-317 (629)
105 TIGR03117 cas_csf4 CRISPR-asso 99.4 2.9E-12 6.4E-17 114.9 9.1 80 3-91 12-92 (636)
106 TIGR03817 DECH_helic helicase/ 99.3 8.8E-12 1.9E-16 115.2 11.8 86 150-244 20-105 (742)
107 cd00268 DEADc DEAD-box helicas 99.3 2.5E-11 5.4E-16 95.4 12.0 98 146-249 1-98 (203)
108 KOG0329|consensus 99.3 4.7E-12 1E-16 99.1 6.0 97 144-248 42-138 (387)
109 KOG0332|consensus 99.3 4E-12 8.8E-17 104.3 5.2 101 142-250 88-190 (477)
110 PRK07246 bifunctional ATP-depe 99.3 1.1E-11 2.4E-16 115.5 8.6 74 4-91 261-335 (820)
111 PRK12904 preprotein translocas 99.3 5.6E-12 1.2E-16 115.2 6.0 111 5-138 94-210 (830)
112 PRK05580 primosome assembly pr 99.3 1.9E-11 4E-16 112.1 8.9 106 7-138 162-267 (679)
113 KOG0327|consensus 99.2 5.1E-12 1.1E-16 104.0 4.1 99 144-250 26-124 (397)
114 PRK13107 preprotein translocas 99.2 3.6E-11 7.9E-16 110.1 7.3 107 11-138 99-211 (908)
115 COG0514 RecQ Superfamily II DN 99.2 1.7E-10 3.8E-15 101.9 11.0 127 1-155 26-154 (590)
116 TIGR01407 dinG_rel DnaQ family 99.2 7.4E-11 1.6E-15 111.1 8.3 75 3-88 260-335 (850)
117 PHA02558 uvsW UvsW helicase; P 99.2 4.9E-11 1.1E-15 106.1 6.7 108 2-138 124-231 (501)
118 COG1111 MPH1 ERCC4-like helica 99.1 3.1E-10 6.8E-15 96.9 9.8 112 7-138 29-140 (542)
119 KOG0951|consensus 99.1 1.1E-09 2.4E-14 101.9 12.1 82 5-88 323-404 (1674)
120 PRK02362 ski2-like helicase; P 99.1 5.3E-10 1.1E-14 104.0 10.4 90 145-245 2-92 (737)
121 PRK13766 Hef nuclease; Provisi 99.1 3.8E-10 8.2E-15 105.8 8.0 111 8-138 30-140 (773)
122 COG1110 Reverse gyrase [DNA re 99.0 1.6E-09 3.4E-14 99.4 10.8 80 4-95 94-174 (1187)
123 PRK00254 ski2-like helicase; P 99.0 1.4E-09 3E-14 101.0 10.7 90 145-244 2-92 (720)
124 KOG0352|consensus 99.0 1.1E-09 2.3E-14 91.9 7.9 115 4-138 33-150 (641)
125 cd00046 DEXDc DEAD-like helica 99.0 3.3E-09 7.2E-14 77.5 9.8 106 8-138 1-112 (144)
126 COG1201 Lhr Lhr-like helicases 99.0 3.7E-09 7.9E-14 96.9 11.7 97 150-250 7-103 (814)
127 KOG0350|consensus 99.0 6.5E-10 1.4E-14 94.6 6.4 92 151-249 144-244 (620)
128 smart00487 DEXDc DEAD-like hel 99.0 6.5E-10 1.4E-14 86.2 5.4 117 4-138 20-138 (201)
129 PRK13767 ATP-dependent helicas 99.0 5.1E-09 1.1E-13 98.8 11.4 88 151-241 18-105 (876)
130 TIGR00595 priA primosomal prot 98.9 1.9E-09 4E-14 95.7 7.3 102 11-138 1-102 (505)
131 KOG4284|consensus 98.9 4.3E-10 9.3E-15 98.5 2.8 97 143-247 24-120 (980)
132 PRK09694 helicase Cas3; Provis 98.9 1.1E-07 2.3E-12 89.1 18.6 74 6-88 300-373 (878)
133 PRK11131 ATP-dependent RNA hel 98.9 3.4E-09 7.3E-14 101.4 8.3 114 3-153 85-206 (1294)
134 PRK01172 ski2-like helicase; P 98.9 9.8E-09 2.1E-13 94.8 10.5 88 145-244 2-89 (674)
135 TIGR01054 rgy reverse gyrase. 98.9 1.1E-08 2.4E-13 98.6 11.0 88 152-250 64-151 (1171)
136 KOG0354|consensus 98.9 2.5E-09 5.3E-14 96.2 5.3 116 3-138 73-188 (746)
137 PRK12899 secA preprotein trans 98.9 1.5E-08 3.3E-13 93.5 10.1 93 147-250 65-165 (970)
138 KOG0351|consensus 98.9 5.8E-09 1.3E-13 97.4 7.4 204 3-244 275-509 (941)
139 PRK08074 bifunctional ATP-depe 98.8 8.4E-09 1.8E-13 97.9 8.2 76 4-89 273-349 (928)
140 PRK09401 reverse gyrase; Revie 98.8 2.7E-08 5.8E-13 95.9 10.9 84 155-250 69-153 (1176)
141 PF00270 DEAD: DEAD/DEAH box h 98.8 2.9E-08 6.3E-13 75.4 8.7 72 168-248 1-72 (169)
142 PRK11747 dinG ATP-dependent DN 98.8 2.5E-08 5.4E-13 92.0 8.5 75 7-91 49-124 (697)
143 PRK14701 reverse gyrase; Provi 98.8 5.1E-08 1.1E-12 96.3 10.8 84 153-248 66-150 (1638)
144 TIGR00614 recQ_fam ATP-depende 98.8 2.4E-08 5.2E-13 88.4 7.8 69 161-243 6-74 (470)
145 PRK12898 secA preprotein trans 98.7 6.8E-08 1.5E-12 87.1 9.8 75 163-250 100-174 (656)
146 COG1205 Distinct helicase fami 98.7 9.9E-08 2.1E-12 89.3 10.0 86 154-248 58-143 (851)
147 TIGR00580 mfd transcription-re 98.7 1.3E-07 2.7E-12 89.3 10.7 86 152-249 437-529 (926)
148 TIGR02621 cas3_GSU0051 CRISPR- 98.7 7E-08 1.5E-12 89.1 8.1 76 163-248 13-90 (844)
149 smart00488 DEXDc2 DEAD-like he 98.7 6.3E-08 1.4E-12 80.2 6.7 62 3-69 23-84 (289)
150 smart00489 DEXDc3 DEAD-like he 98.7 6.3E-08 1.4E-12 80.2 6.7 62 3-69 23-84 (289)
151 PRK10917 ATP-dependent DNA hel 98.6 1.9E-07 4E-12 86.2 10.4 86 153-250 248-340 (681)
152 TIGR00643 recG ATP-dependent D 98.6 1.9E-07 4.1E-12 85.5 9.6 84 154-249 224-313 (630)
153 PRK11057 ATP-dependent DNA hel 98.6 3E-07 6.6E-12 83.8 9.1 74 156-243 14-88 (607)
154 COG1200 RecG RecG-like helicas 98.5 3.9E-06 8.4E-11 75.0 13.1 103 11-138 287-393 (677)
155 PRK10689 transcription-repair 98.4 1.3E-06 2.8E-11 84.4 10.4 78 160-249 595-678 (1147)
156 PLN03137 ATP-dependent DNA hel 98.4 9.6E-07 2.1E-11 83.6 9.0 83 145-241 436-521 (1195)
157 TIGR01389 recQ ATP-dependent D 98.4 9.3E-07 2E-11 80.6 7.9 70 161-244 8-77 (591)
158 TIGR01967 DEAH_box_HrpA ATP-de 98.4 1.8E-06 4E-11 83.3 9.9 109 4-138 79-188 (1283)
159 KOG0353|consensus 98.4 9.6E-07 2.1E-11 73.4 6.3 68 2-89 104-171 (695)
160 PF04851 ResIII: Type III rest 98.3 2E-06 4.4E-11 66.0 7.0 52 6-71 24-75 (184)
161 PRK09200 preprotein translocas 98.3 3.5E-06 7.5E-11 77.9 9.4 73 165-250 77-149 (790)
162 PRK13103 secA preprotein trans 98.3 1.6E-06 3.4E-11 80.3 7.1 107 11-138 99-211 (913)
163 TIGR00603 rad25 DNA repair hel 98.3 5.2E-06 1.1E-10 76.1 9.7 62 8-85 274-335 (732)
164 COG4098 comFA Superfamily II D 98.3 2.6E-05 5.7E-10 64.3 12.7 98 4-137 113-210 (441)
165 TIGR00963 secA preprotein tran 98.3 4.7E-06 1E-10 76.1 8.9 74 164-250 54-127 (745)
166 PRK12906 secA preprotein trans 98.2 4.1E-06 8.8E-11 77.2 8.0 80 5-101 93-172 (796)
167 TIGR03714 secA2 accessory Sec 98.2 9.5E-06 2.1E-10 74.6 9.8 72 166-250 70-141 (762)
168 CHL00122 secA preprotein trans 98.2 5.9E-06 1.3E-10 76.3 8.1 110 8-138 90-205 (870)
169 KOG0948|consensus 98.2 8E-06 1.7E-10 73.4 8.6 155 3-188 140-324 (1041)
170 COG4581 Superfamily II RNA hel 98.2 1.6E-06 3.4E-11 81.4 3.8 107 3-137 130-237 (1041)
171 PRK12326 preprotein translocas 98.1 8.5E-06 1.8E-10 74.0 8.1 107 11-138 95-207 (764)
172 COG1199 DinG Rad3-related DNA 98.1 4.2E-06 9.2E-11 77.3 6.3 56 4-69 31-86 (654)
173 COG1203 CRISPR-associated heli 98.1 3.9E-05 8.4E-10 71.6 11.8 59 9-74 216-274 (733)
174 COG1198 PriA Primosomal protei 98.1 2.2E-05 4.8E-10 71.9 9.7 105 8-138 218-322 (730)
175 KOG0950|consensus 98.0 1.7E-05 3.8E-10 73.0 7.6 78 2-91 235-312 (1008)
176 PHA02558 uvsW UvsW helicase; P 98.0 2.2E-05 4.8E-10 70.2 8.2 71 165-245 113-183 (501)
177 TIGR03117 cas_csf4 CRISPR-asso 98.0 2.9E-05 6.3E-10 70.5 8.8 64 176-248 11-75 (636)
178 TIGR01407 dinG_rel DnaQ family 98.0 4.7E-05 1E-09 72.3 10.6 85 152-248 232-321 (850)
179 TIGR00604 rad3 DNA repair heli 98.0 2.1E-05 4.6E-10 73.2 7.2 60 3-70 25-84 (705)
180 PRK07246 bifunctional ATP-depe 97.9 4.9E-05 1.1E-09 71.6 8.4 73 166-250 245-322 (820)
181 KOG0951|consensus 97.9 4.5E-05 9.8E-10 72.2 7.4 71 6-90 1158-1229(1674)
182 PF13245 AAA_19: Part of AAA d 97.9 0.00011 2.4E-09 48.0 7.3 53 7-66 9-62 (76)
183 PRK12902 secA preprotein trans 97.8 5.8E-05 1.3E-09 70.0 7.9 107 11-138 102-214 (939)
184 smart00487 DEXDc DEAD-like hel 97.8 9.1E-05 2E-09 57.1 8.0 76 162-246 4-80 (201)
185 PHA02653 RNA helicase NPH-II; 97.8 6.8E-05 1.5E-09 68.8 8.0 75 167-246 165-248 (675)
186 COG1204 Superfamily II helicas 97.8 9.9E-05 2.1E-09 68.7 9.0 88 151-249 16-104 (766)
187 PRK13104 secA preprotein trans 97.8 8.8E-05 1.9E-09 69.1 8.4 73 165-250 81-153 (896)
188 TIGR03158 cas3_cyano CRISPR-as 97.8 9.2E-05 2E-09 63.3 7.9 63 171-247 2-66 (357)
189 PRK11448 hsdR type I restricti 97.8 5.8E-05 1.3E-09 73.0 7.0 54 7-69 433-486 (1123)
190 TIGR01587 cas3_core CRISPR-ass 97.8 5.9E-05 1.3E-09 64.6 6.1 52 183-243 1-52 (358)
191 PRK05580 primosome assembly pr 97.7 0.00013 2.8E-09 67.5 8.3 66 166-242 144-212 (679)
192 COG1202 Superfamily II helicas 97.7 0.00022 4.7E-09 62.9 8.5 96 145-250 195-291 (830)
193 KOG0952|consensus 97.7 0.00015 3.3E-09 67.6 7.7 86 163-249 107-193 (1230)
194 COG1110 Reverse gyrase [DNA re 97.7 0.00041 8.9E-09 64.9 10.3 82 156-248 72-153 (1187)
195 COG1061 SSL2 DNA or RNA helica 97.6 0.00016 3.4E-09 63.7 6.5 49 7-69 55-103 (442)
196 COG1197 Mfd Transcription-repa 97.6 0.0009 2E-08 63.7 11.3 198 9-248 617-831 (1139)
197 TIGR00348 hsdR type I site-spe 97.5 0.00018 4E-09 66.4 6.3 55 7-70 263-317 (667)
198 KOG0349|consensus 97.5 6E-05 1.3E-09 64.1 2.8 67 144-210 2-68 (725)
199 KOG0947|consensus 97.4 7.3E-05 1.6E-09 69.1 1.6 102 3-137 308-411 (1248)
200 PRK09751 putative ATP-dependen 97.3 0.00055 1.2E-08 67.7 6.8 57 186-242 1-59 (1490)
201 PRK11664 ATP-dependent RNA hel 97.3 0.00065 1.4E-08 64.0 7.0 62 175-247 14-76 (812)
202 PRK13766 Hef nuclease; Provisi 97.3 0.0011 2.3E-08 62.8 8.5 68 166-244 15-82 (773)
203 KOG0353|consensus 97.3 0.00089 1.9E-08 56.2 6.8 84 147-244 74-158 (695)
204 smart00488 DEXDc2 DEAD-like he 97.2 0.0015 3.3E-08 54.2 7.8 74 166-244 8-85 (289)
205 smart00489 DEXDc3 DEAD-like he 97.2 0.0015 3.3E-08 54.2 7.8 74 166-244 8-85 (289)
206 PF07652 Flavi_DEAD: Flaviviru 97.2 0.00053 1.1E-08 50.1 4.3 53 5-67 2-54 (148)
207 PRK12904 preprotein translocas 97.2 0.0017 3.7E-08 60.6 8.0 74 164-250 79-152 (830)
208 TIGR01970 DEAH_box_HrpB ATP-de 97.2 0.0014 3.1E-08 61.7 7.7 62 175-247 11-73 (819)
209 PRK13107 preprotein translocas 97.2 0.0019 4.1E-08 60.5 8.2 72 166-250 82-153 (908)
210 PF00580 UvrD-helicase: UvrD/R 97.1 0.0018 4E-08 54.0 7.0 61 6-73 12-72 (315)
211 PF07517 SecA_DEAD: SecA DEAD- 97.0 0.0012 2.5E-08 53.9 5.2 73 11-96 94-166 (266)
212 cd00046 DEXDc DEAD-like helica 97.0 0.0037 7.9E-08 45.0 7.0 55 182-245 1-55 (144)
213 PRK14873 primosome assembly pr 96.9 0.0013 2.8E-08 60.5 5.2 101 13-138 166-266 (665)
214 PF04851 ResIII: Type III rest 96.9 0.0043 9.3E-08 47.3 7.2 65 167-245 4-75 (184)
215 PF00176 SNF2_N: SNF2 family N 96.8 0.0072 1.6E-07 50.0 8.4 73 5-86 23-95 (299)
216 COG1643 HrpA HrpA-like helicas 96.7 0.004 8.6E-08 58.5 6.5 23 220-242 259-281 (845)
217 PF13086 AAA_11: AAA domain; P 96.6 0.0059 1.3E-07 48.5 6.2 62 4-68 13-75 (236)
218 PRK08074 bifunctional ATP-depe 96.6 0.012 2.6E-07 56.7 9.2 73 166-248 257-334 (928)
219 COG1061 SSL2 DNA or RNA helica 96.6 0.0086 1.9E-07 52.8 7.5 65 166-244 36-104 (442)
220 PRK09694 helicase Cas3; Provis 96.5 0.014 2.9E-07 55.6 8.7 73 165-246 285-357 (878)
221 KOG0354|consensus 96.5 0.0067 1.4E-07 55.7 6.4 69 166-244 62-130 (746)
222 PF02399 Herpes_ori_bp: Origin 96.4 0.041 8.8E-07 51.2 10.8 49 10-68 52-100 (824)
223 COG0556 UvrB Helicase subunit 96.4 0.0075 1.6E-07 53.1 5.5 48 8-69 33-80 (663)
224 PRK12903 secA preprotein trans 96.2 0.017 3.6E-07 54.1 7.4 76 11-101 95-170 (925)
225 KOG0949|consensus 96.1 0.006 1.3E-07 57.2 3.7 116 4-138 523-641 (1330)
226 PRK13833 conjugal transfer pro 96.0 0.0087 1.9E-07 50.3 4.3 47 4-59 141-187 (323)
227 PRK13894 conjugal transfer ATP 96.0 0.009 1.9E-07 50.2 4.0 47 4-59 145-191 (319)
228 PF13245 AAA_19: Part of AAA d 96.0 0.07 1.5E-06 34.7 7.4 52 182-240 11-62 (76)
229 PRK13851 type IV secretion sys 95.9 0.0057 1.2E-07 51.9 2.5 44 4-59 159-202 (344)
230 COG1200 RecG RecG-like helicas 95.8 0.048 1E-06 49.6 8.3 88 151-250 247-341 (677)
231 KOG0352|consensus 95.8 0.024 5.3E-07 48.6 6.0 63 167-243 21-84 (641)
232 PRK11747 dinG ATP-dependent DN 95.8 0.038 8.3E-07 51.6 7.8 57 182-248 50-107 (697)
233 KOG4150|consensus 95.8 0.012 2.5E-07 52.4 4.1 52 4-64 298-349 (1034)
234 TIGR02782 TrbB_P P-type conjug 95.8 0.016 3.4E-07 48.4 4.8 47 4-59 129-175 (299)
235 PRK15483 type III restriction- 95.7 0.032 7E-07 53.1 7.0 52 7-67 59-110 (986)
236 PF13604 AAA_30: AAA domain; P 95.7 0.051 1.1E-06 42.4 7.0 46 9-65 20-65 (196)
237 PRK13900 type IV secretion sys 95.6 0.0089 1.9E-07 50.6 2.8 44 4-59 157-200 (332)
238 COG1199 DinG Rad3-related DNA 95.6 0.065 1.4E-06 49.8 8.6 71 164-244 13-87 (654)
239 COG0514 RecQ Superfamily II DN 95.5 0.032 6.9E-07 50.4 6.0 68 163-244 14-81 (590)
240 PF07652 Flavi_DEAD: Flaviviru 95.5 0.027 5.8E-07 41.4 4.5 50 183-242 6-55 (148)
241 PRK11448 hsdR type I restricti 95.4 0.064 1.4E-06 52.6 8.0 70 166-244 413-487 (1123)
242 TIGR00604 rad3 DNA repair heli 95.4 0.073 1.6E-06 49.9 8.1 72 165-244 9-84 (705)
243 KOG1803|consensus 95.2 0.029 6.3E-07 50.2 4.7 45 10-65 204-248 (649)
244 PRK12326 preprotein translocas 95.1 0.17 3.6E-06 46.9 9.3 77 161-250 73-149 (764)
245 PF00580 UvrD-helicase: UvrD/R 95.1 0.12 2.5E-06 43.0 7.9 71 168-247 2-72 (315)
246 PF02534 T4SS-DNA_transf: Type 95.1 0.021 4.6E-07 50.8 3.5 48 9-69 46-93 (469)
247 PF00437 T2SE: Type II/IV secr 95.1 0.018 3.9E-07 47.3 2.8 44 5-59 125-168 (270)
248 TIGR00376 DNA helicase, putati 95.1 0.066 1.4E-06 49.5 6.7 50 8-68 174-223 (637)
249 PRK12906 secA preprotein trans 95.0 0.14 3E-06 48.1 8.6 79 159-250 73-151 (796)
250 TIGR00603 rad25 DNA repair hel 95.0 0.086 1.9E-06 49.1 7.2 65 166-244 255-322 (732)
251 cd01126 TraG_VirD4 The TraG/Tr 95.0 0.011 2.5E-07 51.1 1.4 47 9-68 1-47 (384)
252 COG0610 Type I site-specific r 94.9 0.085 1.8E-06 51.0 7.2 60 6-74 272-331 (962)
253 PRK14722 flhF flagellar biosyn 94.8 0.098 2.1E-06 44.9 6.6 22 4-25 134-155 (374)
254 PF01695 IstB_IS21: IstB-like 94.8 0.068 1.5E-06 41.0 5.2 47 4-62 44-90 (178)
255 PRK12900 secA preprotein trans 94.8 0.11 2.3E-06 49.7 7.1 107 11-138 155-267 (1025)
256 PRK13897 type IV secretion sys 94.6 0.025 5.3E-07 51.7 2.7 50 7-69 158-207 (606)
257 TIGR00631 uvrb excinuclease AB 94.6 0.12 2.5E-06 48.0 6.9 48 9-70 31-78 (655)
258 KOG0922|consensus 94.4 0.33 7E-06 44.2 9.1 51 193-248 236-286 (674)
259 CHL00122 secA preprotein trans 94.4 0.23 5E-06 46.9 8.5 72 166-250 76-147 (870)
260 COG1419 FlhF Flagellar GTP-bin 94.4 0.13 2.8E-06 44.3 6.3 82 5-98 201-282 (407)
261 PF07517 SecA_DEAD: SecA DEAD- 94.4 0.54 1.2E-05 38.5 9.6 76 162-250 73-148 (266)
262 PRK11773 uvrD DNA-dependent he 94.3 0.12 2.7E-06 48.6 6.6 58 7-71 22-79 (721)
263 COG4096 HsdR Type I site-speci 94.3 0.055 1.2E-06 50.2 4.1 57 4-69 181-238 (875)
264 PRK11054 helD DNA helicase IV; 94.2 0.1 2.3E-06 48.5 5.9 58 6-70 208-265 (684)
265 COG1111 MPH1 ERCC4-like helica 94.1 0.25 5.5E-06 43.5 7.5 67 167-244 16-82 (542)
266 TIGR01075 uvrD DNA helicase II 94.1 0.12 2.7E-06 48.5 6.2 58 7-71 17-74 (715)
267 PF02562 PhoH: PhoH-like prote 94.1 0.082 1.8E-06 41.4 4.2 45 5-58 17-61 (205)
268 COG4581 Superfamily II RNA hel 94.0 0.22 4.7E-06 48.0 7.5 70 161-242 115-184 (1041)
269 PRK10919 ATP-dependent DNA hel 93.9 0.15 3.3E-06 47.5 6.4 57 7-70 15-71 (672)
270 cd00984 DnaB_C DnaB helicase C 93.9 0.21 4.6E-06 40.1 6.5 49 4-62 10-61 (242)
271 TIGR01074 rep ATP-dependent DN 93.8 0.17 3.8E-06 47.1 6.6 57 7-70 14-70 (664)
272 PF12846 AAA_10: AAA-like doma 93.7 0.14 3.1E-06 42.2 5.3 42 8-60 2-43 (304)
273 PRK13103 secA preprotein trans 93.7 0.33 7.1E-06 46.2 8.0 73 165-250 81-153 (913)
274 PRK08181 transposase; Validate 93.7 0.16 3.4E-06 41.7 5.4 47 5-63 104-150 (269)
275 PRK13850 type IV secretion sys 93.6 0.051 1.1E-06 50.3 2.7 48 8-68 140-187 (670)
276 cd01127 TrwB Bacterial conjuga 93.6 0.11 2.4E-06 45.4 4.6 49 2-61 37-85 (410)
277 COG0630 VirB11 Type IV secreto 93.6 0.067 1.4E-06 44.9 3.1 45 3-59 139-183 (312)
278 COG1219 ClpX ATP-dependent pro 93.5 0.043 9.3E-07 45.6 1.8 18 5-22 95-112 (408)
279 PRK12901 secA preprotein trans 93.4 0.29 6.3E-06 47.0 7.1 61 11-84 186-246 (1112)
280 PF10412 TrwB_AAD_bind: Type I 93.3 0.14 3.1E-06 44.3 4.9 53 1-64 9-61 (386)
281 KOG0953|consensus 93.3 0.13 2.9E-06 45.7 4.5 55 10-85 194-248 (700)
282 COG0556 UvrB Helicase subunit 93.3 0.28 6.2E-06 43.6 6.5 51 181-245 32-82 (663)
283 cd01131 PilT Pilus retraction 93.2 0.12 2.7E-06 40.3 3.9 22 10-32 4-25 (198)
284 PRK13876 conjugal transfer cou 93.1 0.066 1.4E-06 49.5 2.6 48 8-68 145-192 (663)
285 TIGR02788 VirB11 P-type DNA tr 93.1 0.074 1.6E-06 44.6 2.7 20 4-23 141-160 (308)
286 COG2805 PilT Tfp pilus assembl 93.1 0.095 2.1E-06 43.3 3.1 26 10-36 128-153 (353)
287 COG3973 Superfamily I DNA and 93.1 0.26 5.6E-06 44.5 6.0 61 7-72 226-286 (747)
288 TIGR02767 TraG-Ti Ti-type conj 93.0 0.088 1.9E-06 48.3 3.2 49 8-69 212-260 (623)
289 PF04665 Pox_A32: Poxvirus A32 93.0 0.12 2.6E-06 41.6 3.5 22 9-31 15-36 (241)
290 COG1484 DnaC DNA replication p 92.9 0.37 8.1E-06 39.2 6.4 50 6-67 104-153 (254)
291 cd01124 KaiC KaiC is a circadi 92.9 0.21 4.6E-06 38.2 4.8 48 10-69 2-49 (187)
292 COG1198 PriA Primosomal protei 92.9 0.29 6.2E-06 45.7 6.3 69 168-247 200-273 (730)
293 PRK04914 ATP-dependent helicas 92.8 0.42 9.1E-06 46.2 7.5 49 8-66 170-218 (956)
294 smart00382 AAA ATPases associa 92.8 0.083 1.8E-06 37.7 2.2 17 7-23 2-18 (148)
295 PF13086 AAA_11: AAA domain; P 92.7 0.61 1.3E-05 36.7 7.4 72 168-242 3-75 (236)
296 PRK06921 hypothetical protein; 92.7 0.51 1.1E-05 38.7 7.0 49 6-65 116-164 (266)
297 PRK13880 conjugal transfer cou 92.5 0.084 1.8E-06 48.7 2.4 45 8-65 176-220 (636)
298 TIGR02785 addA_Gpos recombinat 92.5 0.31 6.8E-06 48.7 6.4 56 6-69 13-68 (1232)
299 PRK13764 ATPase; Provisional 92.5 0.18 3.8E-06 46.1 4.3 27 6-33 256-282 (602)
300 TIGR00348 hsdR type I site-spe 92.4 0.36 7.7E-06 45.1 6.3 55 182-245 264-318 (667)
301 PRK10536 hypothetical protein; 92.3 0.23 4.9E-06 40.4 4.3 45 4-57 71-115 (262)
302 cd01130 VirB11-like_ATPase Typ 92.2 0.1 2.2E-06 40.3 2.2 21 4-24 22-42 (186)
303 TIGR01420 pilT_fam pilus retra 92.2 0.24 5.2E-06 42.2 4.7 44 6-59 121-164 (343)
304 PRK13822 conjugal transfer cou 92.1 0.11 2.5E-06 47.8 2.8 49 7-68 224-272 (641)
305 PRK12723 flagellar biosynthesi 92.1 0.79 1.7E-05 39.7 7.7 62 6-77 173-236 (388)
306 TIGR03743 SXT_TraD conjugative 92.1 0.43 9.3E-06 44.1 6.4 54 6-70 175-230 (634)
307 KOG0351|consensus 92.1 0.22 4.7E-06 47.9 4.5 72 155-240 253-324 (941)
308 PRK12377 putative replication 92.0 0.49 1.1E-05 38.3 6.0 46 7-64 101-146 (248)
309 TIGR03877 thermo_KaiC_1 KaiC d 92.0 0.35 7.6E-06 38.9 5.1 53 5-69 19-71 (237)
310 TIGR02525 plasmid_TraJ plasmid 91.8 0.35 7.5E-06 41.7 5.1 28 6-34 148-175 (372)
311 COG4962 CpaF Flp pilus assembl 91.8 0.14 2.9E-06 43.1 2.5 46 6-64 172-218 (355)
312 PLN03142 Probable chromatin-re 91.8 0.68 1.5E-05 45.1 7.5 69 5-86 186-254 (1033)
313 PRK06526 transposase; Provisio 91.7 0.26 5.7E-06 40.1 4.2 20 4-23 95-114 (254)
314 PRK05973 replicative DNA helic 91.7 0.35 7.5E-06 38.9 4.8 54 4-69 61-114 (237)
315 PF13481 AAA_25: AAA domain; P 91.7 0.75 1.6E-05 35.4 6.6 63 6-70 31-93 (193)
316 COG3587 Restriction endonuclea 91.7 0.38 8.2E-06 45.1 5.4 55 9-72 76-130 (985)
317 TIGR01073 pcrA ATP-dependent D 91.6 0.45 9.8E-06 44.9 6.2 58 7-71 17-74 (726)
318 COG0467 RAD55 RecA-superfamily 91.6 0.32 7E-06 39.6 4.7 53 5-69 21-73 (260)
319 TIGR03819 heli_sec_ATPase heli 91.4 0.15 3.2E-06 43.4 2.5 44 4-59 175-218 (340)
320 PF09848 DUF2075: Uncharacteri 91.4 0.51 1.1E-05 40.4 5.8 51 10-69 4-54 (352)
321 COG1197 Mfd Transcription-repa 91.3 1.6 3.4E-05 42.6 9.3 87 152-249 580-672 (1139)
322 PF13555 AAA_29: P-loop contai 91.3 0.18 3.9E-06 31.3 2.2 18 6-23 22-39 (62)
323 PF01935 DUF87: Domain of unkn 91.3 0.34 7.4E-06 38.6 4.4 43 7-59 23-65 (229)
324 TIGR03881 KaiC_arch_4 KaiC dom 91.2 0.47 1E-05 37.8 5.1 18 5-22 18-35 (229)
325 PRK08533 flagellar accessory p 91.2 0.62 1.3E-05 37.3 5.8 19 5-23 22-40 (230)
326 PRK06835 DNA replication prote 91.2 0.63 1.4E-05 39.4 6.0 46 6-63 182-227 (329)
327 PRK12902 secA preprotein trans 91.2 1.5 3.2E-05 41.8 8.8 72 166-250 85-156 (939)
328 PF12775 AAA_7: P-loop contain 91.1 0.11 2.3E-06 42.8 1.3 19 4-22 30-48 (272)
329 PF06745 KaiC: KaiC; InterPro 91.1 0.44 9.6E-06 37.9 4.8 51 5-67 17-68 (226)
330 TIGR03499 FlhF flagellar biosy 91.0 0.49 1.1E-05 39.2 5.2 19 6-24 193-211 (282)
331 COG1074 RecB ATP-dependent exo 91.0 0.49 1.1E-05 46.9 5.9 55 6-67 15-70 (1139)
332 cd01122 GP4d_helicase GP4d_hel 91.0 0.45 9.7E-06 39.0 4.9 40 4-53 27-66 (271)
333 PRK11889 flhF flagellar biosyn 91.0 1.1 2.3E-05 39.0 7.2 19 7-25 241-259 (436)
334 PF12340 DUF3638: Protein of u 90.9 1.4 3E-05 35.2 7.3 73 5-88 39-112 (229)
335 PRK09183 transposase/IS protei 90.8 0.65 1.4E-05 37.9 5.7 19 4-22 99-117 (259)
336 PRK04328 hypothetical protein; 90.8 0.58 1.3E-05 37.9 5.3 51 6-69 22-73 (249)
337 PF13401 AAA_22: AAA domain; P 90.8 0.16 3.4E-06 36.4 1.8 19 5-23 2-20 (131)
338 COG2804 PulE Type II secretory 90.7 0.15 3.3E-06 45.0 1.9 23 10-33 261-283 (500)
339 TIGR03754 conj_TOL_TraD conjug 90.4 0.74 1.6E-05 42.4 6.1 54 7-71 180-235 (643)
340 PRK10875 recD exonuclease V su 90.4 1.3 2.9E-05 40.8 7.8 58 4-68 164-221 (615)
341 PRK05703 flhF flagellar biosyn 90.3 1.2 2.7E-05 39.1 7.2 20 5-24 219-238 (424)
342 PRK08116 hypothetical protein; 90.0 1 2.2E-05 37.0 6.1 44 8-63 115-158 (268)
343 TIGR03878 thermo_KaiC_2 KaiC d 89.9 1.1 2.3E-05 36.7 6.2 17 6-22 35-51 (259)
344 PRK14721 flhF flagellar biosyn 89.9 1.2 2.6E-05 39.0 6.8 62 5-76 189-250 (420)
345 PRK08727 hypothetical protein; 89.9 0.92 2E-05 36.4 5.7 49 9-69 43-91 (233)
346 TIGR00150 HI0065_YjeE ATPase, 89.9 0.21 4.5E-06 36.3 1.8 44 5-62 20-63 (133)
347 cd00009 AAA The AAA+ (ATPases 89.7 0.26 5.7E-06 35.4 2.3 17 6-22 18-34 (151)
348 COG1224 TIP49 DNA helicase TIP 89.5 0.4 8.8E-06 40.6 3.4 27 5-32 63-89 (450)
349 TIGR02640 gas_vesic_GvpN gas v 89.5 0.23 5E-06 40.6 2.0 20 4-23 18-37 (262)
350 TIGR02784 addA_alphas double-s 89.3 1.4 3E-05 43.9 7.6 55 7-69 10-64 (1141)
351 PF06068 TIP49: TIP49 C-termin 89.3 0.32 6.9E-06 41.5 2.7 26 6-32 49-74 (398)
352 PF09439 SRPRB: Signal recogni 89.2 0.3 6.5E-06 37.5 2.3 20 7-26 3-22 (181)
353 TIGR01447 recD exodeoxyribonuc 89.2 1.4 3E-05 40.5 6.9 59 4-68 157-215 (586)
354 TIGR00376 DNA helicase, putati 89.1 2.1 4.6E-05 39.8 8.1 66 166-242 157-223 (637)
355 cd01129 PulE-GspE PulE/GspE Th 89.1 0.46 1E-05 38.9 3.5 25 7-32 80-104 (264)
356 PF03796 DnaB_C: DnaB-like hel 89.0 1.7 3.7E-05 35.3 6.8 48 5-62 17-67 (259)
357 KOG1802|consensus 89.0 0.78 1.7E-05 42.0 5.0 56 4-69 422-477 (935)
358 PRK05298 excinuclease ABC subu 89.0 1.4 3.1E-05 41.0 6.9 48 9-70 34-81 (652)
359 PF13604 AAA_30: AAA domain; P 88.9 2.8 6.1E-05 32.6 7.7 62 168-240 3-66 (196)
360 COG3973 Superfamily I DNA and 88.7 1.2 2.5E-05 40.5 5.8 61 181-246 226-286 (747)
361 TIGR01547 phage_term_2 phage t 88.7 2 4.3E-05 37.4 7.3 58 9-74 3-61 (396)
362 TIGR02759 TraD_Ftype type IV c 88.6 0.68 1.5E-05 42.3 4.5 19 4-22 173-191 (566)
363 KOG1133|consensus 88.3 0.45 9.7E-06 43.6 3.1 32 4-35 31-62 (821)
364 PF01580 FtsK_SpoIIIE: FtsK/Sp 88.3 1 2.2E-05 35.2 4.8 27 6-33 37-63 (205)
365 KOG1942|consensus 88.2 0.53 1.1E-05 38.9 3.2 27 5-32 62-88 (456)
366 PTZ00301 uridine kinase; Provi 88.2 0.97 2.1E-05 35.7 4.7 22 10-32 6-27 (210)
367 TIGR03880 KaiC_arch_3 KaiC dom 88.2 1.2 2.6E-05 35.3 5.3 52 6-69 15-66 (224)
368 PF02500 DNA_pack_N: Probable 88.2 0.64 1.4E-05 38.0 3.6 48 14-70 195-242 (284)
369 PRK07952 DNA replication prote 88.1 1.7 3.7E-05 35.1 6.1 44 8-63 100-143 (244)
370 PF13191 AAA_16: AAA ATPase do 87.9 0.64 1.4E-05 35.3 3.4 29 5-34 22-50 (185)
371 PRK12727 flagellar biosynthesi 87.8 1.6 3.5E-05 39.4 6.2 22 3-24 346-367 (559)
372 COG0324 MiaA tRNA delta(2)-iso 87.6 0.45 9.9E-06 39.7 2.5 12 10-21 6-17 (308)
373 TIGR02524 dot_icm_DotB Dot/Icm 87.5 0.4 8.6E-06 41.1 2.2 27 6-33 133-159 (358)
374 PF07088 GvpD: GvpD gas vesicl 87.4 0.37 8E-06 41.4 1.9 29 5-34 8-36 (484)
375 TIGR00665 DnaB replicative DNA 87.4 1.9 4E-05 38.1 6.4 28 5-33 193-220 (434)
376 TIGR02538 type_IV_pilB type IV 87.3 0.53 1.2E-05 43.0 3.1 24 8-32 317-340 (564)
377 KOG0745|consensus 87.1 0.37 8E-06 41.9 1.8 19 4-22 223-241 (564)
378 PF13207 AAA_17: AAA domain; P 87.1 0.44 9.5E-06 33.6 1.9 13 10-22 2-14 (121)
379 PF00004 AAA: ATPase family as 87.0 0.46 9.9E-06 33.8 2.0 13 10-22 1-13 (132)
380 KOG2340|consensus 86.9 2.9 6.3E-05 37.5 7.0 80 166-245 216-318 (698)
381 PF07728 AAA_5: AAA domain (dy 86.8 0.44 9.5E-06 34.6 1.9 14 9-22 1-14 (139)
382 PF00448 SRP54: SRP54-type pro 86.8 0.44 9.4E-06 37.2 1.9 15 10-24 4-18 (196)
383 TIGR02880 cbbX_cfxQ probable R 86.8 0.55 1.2E-05 38.9 2.7 19 6-24 57-75 (284)
384 KOG1132|consensus 86.8 0.72 1.6E-05 43.4 3.5 69 4-72 37-136 (945)
385 PRK10436 hypothetical protein; 86.6 0.42 9.1E-06 42.4 1.9 25 7-32 218-242 (462)
386 cd01394 radB RadB. The archaea 86.6 1.2 2.7E-05 35.0 4.5 23 6-29 18-40 (218)
387 PRK12726 flagellar biosynthesi 86.5 2.1 4.4E-05 37.1 5.9 21 5-25 204-224 (407)
388 TIGR03600 phage_DnaB phage rep 86.5 2.2 4.9E-05 37.4 6.4 28 4-32 191-218 (421)
389 COG1203 CRISPR-associated heli 86.3 2.4 5.3E-05 40.1 6.9 74 168-248 197-274 (733)
390 PF01078 Mg_chelatase: Magnesi 86.2 0.44 9.5E-06 37.3 1.6 20 4-23 19-38 (206)
391 KOG0060|consensus 86.2 0.54 1.2E-05 42.3 2.3 21 4-24 458-478 (659)
392 PF14617 CMS1: U3-containing 9 86.1 0.22 4.8E-06 40.3 -0.0 85 43-137 123-209 (252)
393 TIGR03744 traC_PFL_4706 conjug 86.1 2.4 5.2E-05 41.1 6.8 41 7-57 475-515 (893)
394 TIGR02688 conserved hypothetic 86.1 0.44 9.4E-06 41.6 1.7 24 2-25 204-227 (449)
395 KOG0389|consensus 85.8 3.4 7.4E-05 38.7 7.2 113 7-138 418-533 (941)
396 KOG1533|consensus 85.8 0.96 2.1E-05 36.2 3.3 26 10-36 5-30 (290)
397 COG1136 SalX ABC-type antimicr 85.6 0.59 1.3E-05 37.2 2.1 58 170-236 148-209 (226)
398 PRK14729 miaA tRNA delta(2)-is 85.4 0.56 1.2E-05 39.1 1.9 16 6-21 3-18 (300)
399 COG1126 GlnQ ABC-type polar am 85.4 0.61 1.3E-05 36.8 2.0 19 4-22 25-43 (240)
400 TIGR02237 recomb_radB DNA repa 85.3 1.6 3.5E-05 34.1 4.5 17 6-22 11-27 (209)
401 PF05496 RuvB_N: Holliday junc 85.3 0.75 1.6E-05 36.6 2.5 14 9-22 52-65 (233)
402 PRK04296 thymidine kinase; Pro 85.2 2.2 4.7E-05 33.0 5.1 35 9-54 4-38 (190)
403 PRK13700 conjugal transfer pro 85.2 1.2 2.6E-05 41.5 4.2 51 1-62 179-229 (732)
404 PRK05595 replicative DNA helic 85.2 3 6.4E-05 37.0 6.6 26 6-32 200-225 (444)
405 PF00308 Bac_DnaA: Bacterial d 85.1 3.1 6.8E-05 33.0 6.1 46 9-64 36-81 (219)
406 PHA00729 NTP-binding motif con 85.1 0.7 1.5E-05 36.8 2.3 18 9-26 19-37 (226)
407 KOG0385|consensus 85.0 5.4 0.00012 37.5 8.0 70 4-86 183-252 (971)
408 PRK07004 replicative DNA helic 84.9 2.5 5.3E-05 37.7 5.9 28 5-33 211-238 (460)
409 PRK05748 replicative DNA helic 84.9 1.8 3.9E-05 38.4 5.0 28 5-33 201-228 (448)
410 PF13671 AAA_33: AAA domain; P 84.9 0.6 1.3E-05 33.9 1.8 13 10-22 2-14 (143)
411 PF00625 Guanylate_kin: Guanyl 84.7 1.6 3.5E-05 33.4 4.2 17 6-22 1-17 (183)
412 PF02367 UPF0079: Uncharacteri 84.6 0.37 8.1E-06 34.5 0.5 41 6-60 14-54 (123)
413 PRK08939 primosomal protein Dn 84.5 2.8 6E-05 35.2 5.8 18 6-23 155-172 (306)
414 PF03205 MobB: Molybdopterin g 84.5 2.3 5E-05 31.1 4.7 24 10-34 3-26 (140)
415 PRK11823 DNA repair protein Ra 84.4 2.1 4.6E-05 38.0 5.3 53 6-70 79-131 (446)
416 PRK08506 replicative DNA helic 84.4 3 6.4E-05 37.3 6.2 28 5-33 190-217 (472)
417 TIGR00176 mobB molybdopterin-g 84.3 2.5 5.3E-05 31.6 4.9 22 10-32 2-23 (155)
418 PF05729 NACHT: NACHT domain 84.1 1.3 2.7E-05 32.8 3.3 24 10-34 3-26 (166)
419 COG4889 Predicted helicase [Ge 84.1 2.4 5.2E-05 40.4 5.5 61 17-93 190-250 (1518)
420 PF13238 AAA_18: AAA domain; P 84.1 0.74 1.6E-05 32.6 1.9 13 10-22 1-13 (129)
421 PLN02165 adenylate isopentenyl 84.1 0.89 1.9E-05 38.4 2.6 19 6-24 42-60 (334)
422 cd00820 PEPCK_HprK Phosphoenol 84.0 0.95 2.1E-05 31.5 2.3 21 5-25 13-33 (107)
423 KOG1802|consensus 84.0 3.5 7.6E-05 38.0 6.3 76 159-244 403-478 (935)
424 PF05970 PIF1: PIF1-like helic 84.0 2.2 4.7E-05 36.8 5.0 47 5-62 20-66 (364)
425 COG0606 Predicted ATPase with 83.9 0.68 1.5E-05 40.7 1.9 20 4-23 195-214 (490)
426 PRK09361 radB DNA repair and r 83.9 2 4.4E-05 34.0 4.6 18 5-22 21-38 (225)
427 cd01918 HprK_C HprK/P, the bif 83.7 0.9 1.9E-05 33.7 2.3 18 5-22 12-29 (149)
428 PRK11054 helD DNA helicase IV; 83.7 5.8 0.00013 37.3 8.0 70 166-244 196-265 (684)
429 cd00544 CobU Adenosylcobinamid 83.7 3.9 8.4E-05 31.0 5.8 45 10-68 2-46 (169)
430 TIGR02881 spore_V_K stage V sp 83.6 0.96 2.1E-05 36.9 2.6 18 6-23 41-58 (261)
431 KOG0924|consensus 83.5 2.9 6.4E-05 38.7 5.7 58 4-74 368-425 (1042)
432 TIGR02655 circ_KaiC circadian 83.4 2.7 5.8E-05 37.7 5.5 53 5-69 261-313 (484)
433 TIGR01425 SRP54_euk signal rec 83.4 5.2 0.00011 35.2 7.1 15 9-23 102-116 (429)
434 PRK06067 flagellar accessory p 83.4 2.5 5.4E-05 33.7 4.9 16 6-21 24-39 (234)
435 TIGR02012 tigrfam_recA protein 83.3 3.5 7.7E-05 34.8 5.9 40 6-56 54-93 (321)
436 PRK06995 flhF flagellar biosyn 83.2 5.3 0.00011 35.8 7.1 20 6-25 255-274 (484)
437 PRK05642 DNA replication initi 83.1 4 8.7E-05 32.7 6.0 50 8-69 46-95 (234)
438 PRK11131 ATP-dependent RNA hel 83.0 2.8 6.2E-05 41.9 5.9 60 177-248 85-151 (1294)
439 PF07724 AAA_2: AAA domain (Cd 83.0 0.83 1.8E-05 34.8 1.9 14 9-22 5-18 (171)
440 PF03029 ATP_bind_1: Conserved 82.8 1.5 3.2E-05 35.4 3.3 22 12-34 1-22 (238)
441 PRK10078 ribose 1,5-bisphospho 82.7 0.97 2.1E-05 34.8 2.2 17 7-23 2-18 (186)
442 TIGR03420 DnaA_homol_Hda DnaA 82.7 0.96 2.1E-05 35.8 2.3 17 6-22 37-53 (226)
443 CHL00181 cbbX CbbX; Provisiona 82.4 1.1 2.5E-05 37.1 2.7 18 6-23 58-75 (287)
444 PHA02244 ATPase-like protein 82.4 0.9 1.9E-05 39.0 2.0 18 4-21 116-133 (383)
445 TIGR02533 type_II_gspE general 82.4 0.83 1.8E-05 40.9 1.9 22 10-32 245-266 (486)
446 PHA02542 41 41 helicase; Provi 82.4 4.5 9.8E-05 36.2 6.5 26 7-33 190-215 (473)
447 PRK06904 replicative DNA helic 82.4 4.9 0.00011 35.9 6.8 27 6-33 220-246 (472)
448 cd01125 repA Hexameric Replica 82.1 6.1 0.00013 31.6 6.7 13 10-22 4-16 (239)
449 PRK05342 clpX ATP-dependent pr 82.0 1.1 2.4E-05 39.3 2.5 18 6-23 107-124 (412)
450 PRK14530 adenylate kinase; Pro 81.9 1 2.2E-05 35.5 2.1 17 6-22 2-18 (215)
451 cd00227 CPT Chloramphenicol (C 81.8 1.1 2.4E-05 34.0 2.2 18 6-23 1-18 (175)
452 PRK10919 ATP-dependent DNA hel 81.8 6.2 0.00013 37.0 7.4 69 167-244 3-71 (672)
453 cd00071 GMPK Guanosine monopho 81.7 0.91 2E-05 33.1 1.6 13 10-22 2-14 (137)
454 PRK08840 replicative DNA helic 81.7 5.2 0.00011 35.7 6.6 28 5-33 215-242 (464)
455 PRK09302 circadian clock prote 81.7 4.3 9.4E-05 36.6 6.3 16 6-21 30-45 (509)
456 PRK13531 regulatory ATPase Rav 81.5 1 2.2E-05 40.1 2.1 21 3-23 35-55 (498)
457 PRK00771 signal recognition pa 81.5 6.7 0.00014 34.7 7.1 18 7-24 95-112 (437)
458 PRK00149 dnaA chromosomal repl 81.4 6 0.00013 35.1 7.0 47 8-64 149-195 (450)
459 PRK11331 5-methylcytosine-spec 81.4 0.99 2.1E-05 39.8 2.0 22 3-24 190-211 (459)
460 TIGR00631 uvrb excinuclease AB 81.4 6.1 0.00013 36.9 7.2 66 166-245 9-79 (655)
461 PRK14087 dnaA chromosomal repl 81.4 6 0.00013 35.2 6.9 48 8-65 142-189 (450)
462 PF00005 ABC_tran: ABC transpo 81.3 1.4 2.9E-05 31.8 2.5 19 4-22 8-26 (137)
463 PF00485 PRK: Phosphoribulokin 81.3 1.8 3.8E-05 33.5 3.2 12 10-21 2-13 (194)
464 TIGR01650 PD_CobS cobaltochela 81.3 1.1 2.4E-05 37.7 2.2 19 4-22 61-79 (327)
465 PRK08903 DnaA regulatory inact 81.3 1 2.2E-05 35.8 1.9 16 6-21 41-56 (227)
466 KOG1002|consensus 81.2 5.2 0.00011 35.6 6.2 61 11-87 208-268 (791)
467 TIGR00382 clpX endopeptidase C 81.1 1.1 2.5E-05 39.1 2.3 18 6-23 115-132 (413)
468 COG3451 VirB4 Type IV secretor 81.0 2.6 5.6E-05 40.2 4.7 15 8-22 437-451 (796)
469 TIGR02655 circ_KaiC circadian 81.0 3.5 7.5E-05 37.0 5.3 54 5-69 19-72 (484)
470 TIGR01075 uvrD DNA helicase II 80.9 5.9 0.00013 37.5 7.1 71 166-245 4-74 (715)
471 cd01363 Motor_domain Myosin an 80.9 0.52 1.1E-05 36.3 0.1 21 3-23 18-40 (186)
472 PRK08006 replicative DNA helic 80.9 6.1 0.00013 35.3 6.8 27 6-33 223-249 (471)
473 PRK00300 gmk guanylate kinase; 80.8 1.1 2.3E-05 34.9 1.9 18 5-22 3-20 (205)
474 TIGR00362 DnaA chromosomal rep 80.7 6.3 0.00014 34.4 6.8 46 8-63 137-182 (405)
475 PRK00131 aroK shikimate kinase 80.6 1.4 3E-05 33.1 2.4 18 5-22 2-19 (175)
476 KOG1131|consensus 80.6 8.2 0.00018 34.7 7.2 57 6-69 34-90 (755)
477 COG1474 CDC6 Cdc6-related prot 80.4 1.1 2.4E-05 38.6 1.9 15 9-23 44-58 (366)
478 PRK08084 DNA replication initi 80.2 1.2 2.5E-05 35.8 1.9 17 6-22 44-60 (235)
479 KOG1803|consensus 80.2 6.4 0.00014 35.9 6.5 64 167-241 186-250 (649)
480 PRK07261 topology modulation p 80.1 1.2 2.5E-05 33.9 1.8 15 9-23 2-16 (171)
481 PF02456 Adeno_IVa2: Adenoviru 80.1 1.3 2.8E-05 36.9 2.1 51 10-69 90-140 (369)
482 PF00735 Septin: Septin; Inte 80.0 1.2 2.5E-05 36.9 1.9 21 9-30 6-26 (281)
483 PRK00091 miaA tRNA delta(2)-is 80.0 1 2.2E-05 37.7 1.6 15 8-22 5-19 (307)
484 PRK09302 circadian clock prote 80.0 3.6 7.8E-05 37.2 5.1 53 5-69 271-323 (509)
485 cd01120 RecA-like_NTPases RecA 79.5 1.2 2.6E-05 32.8 1.7 14 10-23 2-15 (165)
486 cd02025 PanK Pantothenate kina 79.3 3.5 7.7E-05 32.7 4.4 14 10-23 2-15 (220)
487 PRK05636 replicative DNA helic 79.3 6.7 0.00015 35.4 6.6 25 7-32 265-289 (505)
488 PRK08760 replicative DNA helic 79.3 3.7 8E-05 36.8 4.9 27 6-33 228-254 (476)
489 COG0653 SecA Preprotein transl 79.2 7.6 0.00017 36.9 7.0 74 11-97 97-170 (822)
490 PRK06321 replicative DNA helic 79.1 6.3 0.00014 35.3 6.3 26 7-33 226-251 (472)
491 PRK14723 flhF flagellar biosyn 79.0 4.6 9.9E-05 38.2 5.6 21 6-26 184-204 (767)
492 COG1223 Predicted ATPase (AAA+ 79.0 1.3 2.8E-05 36.1 1.8 16 7-22 151-166 (368)
493 TIGR02746 TraC-F-type type-IV 79.0 3.2 6.9E-05 39.7 4.7 40 7-57 430-469 (797)
494 PLN03025 replication factor C 79.0 1.9 4.1E-05 36.3 2.9 15 8-22 35-49 (319)
495 KOG0926|consensus 78.8 7.6 0.00017 36.8 6.7 23 221-243 482-504 (1172)
496 PRK15483 type III restriction- 78.7 6.7 0.00014 38.1 6.6 52 181-241 59-110 (986)
497 PRK06749 replicative DNA helic 78.7 6.1 0.00013 34.9 6.0 27 6-33 185-211 (428)
498 cd00983 recA RecA is a bacter 78.7 6.2 0.00013 33.4 5.8 42 6-58 54-95 (325)
499 PF14532 Sigma54_activ_2: Sigm 78.6 1.8 3.8E-05 31.5 2.3 19 5-23 19-37 (138)
500 PRK08118 topology modulation p 78.6 1.4 3E-05 33.3 1.8 14 9-22 3-16 (167)
No 1
>KOG0331|consensus
Probab=100.00 E-value=3.1e-37 Score=264.07 Aligned_cols=221 Identities=23% Similarity=0.287 Sum_probs=168.6
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.+++|||++.+|.||||||+||+||+++++.... ......++|++||++||||||+||.+++.++++.++ +++.
T Consensus 122 wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~--~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~--~~~~ 197 (519)
T KOG0331|consen 122 WPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQ--GKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLR--LRST 197 (519)
T ss_pred cceeccCCceEEEeccCCcchhhhhhHHHHHHHhcc--ccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCC--ccEE
Confidence 799999999999999999999999999999998731 122344689999999999999999999999999887 8999
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
+++||.++..|...+++++||+ |+| |||+.++.++....+++ +.++|+||+ |+|.+|||.+++.+++.
T Consensus 198 cvyGG~~~~~Q~~~l~~gvdiv--iaT----PGRl~d~le~g~~~l~~-v~ylVLDEA-----DrMldmGFe~qI~~Il~ 265 (519)
T KOG0331|consen 198 CVYGGAPKGPQLRDLERGVDVV--IAT----PGRLIDLLEEGSLNLSR-VTYLVLDEA-----DRMLDMGFEPQIRKILS 265 (519)
T ss_pred EEeCCCCccHHHHHHhcCCcEE--EeC----ChHHHHHHHcCCccccc-eeEEEeccH-----HhhhccccHHHHHHHHH
Confidence 9999999999999999999984 555 99999999999999998 999999998 99999999999999998
Q ss_pred HCCCCCChHHHHhhhhhhhcC-----------C--cEEEEccC----------------CCchhHHhHHHHHHHHHhhhc
Q psy7786 161 AKGIKKPTPIQVQGIPAALSG-----------R--DIIGIAFT----------------GSGKTLVFVLPILMFCLEQET 211 (252)
Q Consensus 161 ~~~~~~p~~iQ~~~~p~~~~~-----------~--~~~~~~~~----------------g~gKt~~~~~~~l~~i~~~~~ 211 (252)
+..-. ..|..+++++.++ . .+.+.... ...| ..-+.++|..++
T Consensus 266 ~i~~~---~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K-~~~l~~lL~~~~---- 337 (519)
T KOG0331|consen 266 QIPRP---DRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAK-LRKLGKLLEDIS---- 337 (519)
T ss_pred hcCCC---cccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHH-HHHHHHHHHHHh----
Confidence 86311 1133333333221 1 11111100 1111 111122222222
Q ss_pred cCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH-hhCCCC
Q psy7786 212 KLPFLPGEGPYGLIICPSRELARQTHDIIQYYC-AALPIG 250 (252)
Q Consensus 212 ~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~-~~~~i~ 250 (252)
.+...++||||+|+..|++++..+++.+ +...+|
T Consensus 338 -----~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iH 372 (519)
T KOG0331|consen 338 -----SDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIH 372 (519)
T ss_pred -----ccCCCcEEEEecchhhHHHHHHHHHhcCcceeeec
Confidence 2346789999999999999999998853 444443
No 2
>KOG0330|consensus
Probab=100.00 E-value=1.4e-34 Score=235.18 Aligned_cols=205 Identities=23% Similarity=0.311 Sum_probs=154.3
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||+++.|+|+|+.|+||||||.||+||++++++.+++ .++|||++||||||.||.+.++.|+..+| +++.
T Consensus 92 iP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~--------~~~~lVLtPtRELA~QI~e~fe~Lg~~ig--lr~~ 161 (476)
T KOG0330|consen 92 IPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK--------LFFALVLTPTRELAQQIAEQFEALGSGIG--LRVA 161 (476)
T ss_pred cchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC--------CceEEEecCcHHHHHHHHHHHHHhccccC--eEEE
Confidence 7999999999999999999999999999999998663 58999999999999999999999999998 8999
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCCh-hHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPD-QVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRAL 159 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~-~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l 159 (252)
+++||.++..|...+.+.+||. |+| ||+|.++.+ .....+++ ++++|.||+ +++.++.|.+.+-.++
T Consensus 162 ~lvGG~~m~~q~~~L~kkPhil--VaT----PGrL~dhl~~Tkgf~le~-lk~LVlDEA-----DrlLd~dF~~~ld~IL 229 (476)
T KOG0330|consen 162 VLVGGMDMMLQANQLSKKPHIL--VAT----PGRLWDHLENTKGFSLEQ-LKFLVLDEA-----DRLLDMDFEEELDYIL 229 (476)
T ss_pred EEecCchHHHHHHHhhcCCCEE--EeC----cHHHHHHHHhccCccHHH-hHHHhhchH-----HhhhhhhhHHHHHHHH
Confidence 9999999999988888887773 444 777777766 34555555 999999998 8999999999987777
Q ss_pred HHCCCCCChHHHHhhhhhhhcCC----------cEEEEc-----------------cCCCchhHHhHHHHHHHHHhhhcc
Q psy7786 160 EAKGIKKPTPIQVQGIPAALSGR----------DIIGIA-----------------FTGSGKTLVFVLPILMFCLEQETK 212 (252)
Q Consensus 160 ~~~~~~~p~~iQ~~~~p~~~~~~----------~~~~~~-----------------~~g~gKt~~~~~~~l~~i~~~~~~ 212 (252)
...- ..-|...+++++..+ +..-++ .++..| .+|++.++..
T Consensus 230 k~ip----~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K-~~yLV~ll~e------- 297 (476)
T KOG0330|consen 230 KVIP----RERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDK-DTYLVYLLNE------- 297 (476)
T ss_pred HhcC----ccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEecccccc-chhHHHHHHh-------
Confidence 6642 222222222222210 111011 111222 2333433332
Q ss_pred CCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 213 LPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 213 ~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
..+..+||||+|...+++++-.|+.++
T Consensus 298 -----~~g~s~iVF~~t~~tt~~la~~L~~lg 324 (476)
T KOG0330|consen 298 -----LAGNSVIVFCNTCNTTRFLALLLRNLG 324 (476)
T ss_pred -----hcCCcEEEEEeccchHHHHHHHHHhcC
Confidence 124569999999999999999988765
No 3
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-33 Score=246.41 Aligned_cols=217 Identities=22% Similarity=0.273 Sum_probs=159.4
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.++.|+|++++|+||||||+||++|+++.+...... ....+||++||||||.|+++.+++++++++ ++++.
T Consensus 60 IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~------~~~~aLil~PTRELA~Qi~~~~~~~~~~~~-~~~~~ 132 (513)
T COG0513 60 IPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVER------KYVSALILAPTRELAVQIAEELRKLGKNLG-GLRVA 132 (513)
T ss_pred HHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccccc------CCCceEEECCCHHHHHHHHHHHHHHHhhcC-CccEE
Confidence 78999999999999999999999999999997643110 112299999999999999999999999983 38999
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
+++||.++..|.+.+++++||+ |+| |||++++.++....+.+ ++++|.||+ +.|.++||.+++...+.
T Consensus 133 ~i~GG~~~~~q~~~l~~~~~iv--VaT----PGRllD~i~~~~l~l~~-v~~lVlDEA-----DrmLd~Gf~~~i~~I~~ 200 (513)
T COG0513 133 VVYGGVSIRKQIEALKRGVDIV--VAT----PGRLLDLIKRGKLDLSG-VETLVLDEA-----DRMLDMGFIDDIEKILK 200 (513)
T ss_pred EEECCCCHHHHHHHHhcCCCEE--EEC----ccHHHHHHHcCCcchhh-cCEEEeccH-----hhhhcCCCHHHHHHHHH
Confidence 9999999999999999988884 555 99999999999777777 999999998 99999999999988887
Q ss_pred HCCC---------CCChHHHHhhhhhhhcCCcEEEEccCC--C-chh---------HHhHHHHHHHHHhhhccCCCCCCC
Q psy7786 161 AKGI---------KKPTPIQVQGIPAALSGRDIIGIAFTG--S-GKT---------LVFVLPILMFCLEQETKLPFLPGE 219 (252)
Q Consensus 161 ~~~~---------~~p~~iQ~~~~p~~~~~~~~~~~~~~g--~-gKt---------~~~~~~~l~~i~~~~~~~~~~~~~ 219 (252)
.... ..|..+.......+.+...+.+..... . .+. ...-...+..++... .
T Consensus 201 ~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~--------~ 272 (513)
T COG0513 201 ALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDE--------D 272 (513)
T ss_pred hCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcC--------C
Confidence 7531 112222222221111111122211110 0 000 001144555555432 2
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 220 GPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 220 ~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
..++||||+|+..|+.++..|++.+
T Consensus 273 ~~~~IVF~~tk~~~~~l~~~l~~~g 297 (513)
T COG0513 273 EGRVIVFVRTKRLVEELAESLRKRG 297 (513)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHCC
Confidence 3379999999999999999998775
No 4
>KOG0342|consensus
Probab=99.97 E-value=1.6e-31 Score=223.11 Aligned_cols=210 Identities=22% Similarity=0.293 Sum_probs=161.9
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||+++.|+|++++|.||||||+||++|.++.+..... .+.++..++|++||||||.|++.+++.+.++.. .+.+.
T Consensus 113 i~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~----~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~-~~~v~ 187 (543)
T KOG0342|consen 113 IPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKF----KPRNGTGVLIICPTRELAMQIFAEAKELLKYHE-SITVG 187 (543)
T ss_pred cCccCCCccceeeeccCCCceeeehhHHHHHHHhccc----CCCCCeeEEEecccHHHHHHHHHHHHHHHhhCC-CcceE
Confidence 6899999999999999999999999999999876543 334789999999999999999999999999984 38999
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
.+.||++.....+.+.+++.|. |+| ||||+++.++....+.+.++++|+||+ ++..++||..++.+++.
T Consensus 188 ~viGG~~~~~e~~kl~k~~nil--iAT----PGRLlDHlqNt~~f~~r~~k~lvlDEA-----DrlLd~GF~~di~~Ii~ 256 (543)
T KOG0342|consen 188 IVIGGNNFSVEADKLVKGCNIL--IAT----PGRLLDHLQNTSGFLFRNLKCLVLDEA-----DRLLDIGFEEDVEQIIK 256 (543)
T ss_pred EEeCCccchHHHHHhhccccEE--EeC----CchHHhHhhcCCcchhhccceeEeecc-----hhhhhcccHHHHHHHHH
Confidence 9999999998889999998885 666 999999999988877777999999998 99999999999988887
Q ss_pred HCCCCCChHHHHhhhhhhhcC-----------CcEEEEccC--C----------------CchhHHhHHHHHHHHHhhhc
Q psy7786 161 AKGIKKPTPIQVQGIPAALSG-----------RDIIGIAFT--G----------------SGKTLVFVLPILMFCLEQET 211 (252)
Q Consensus 161 ~~~~~~p~~iQ~~~~p~~~~~-----------~~~~~~~~~--g----------------~gKt~~~~~~~l~~i~~~~~ 211 (252)
-.. ...|...++++... +|....... + +.+.+..++.++. ++.
T Consensus 257 ~lp----k~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LK---k~~- 328 (543)
T KOG0342|consen 257 ILP----KQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLK---KNI- 328 (543)
T ss_pred hcc----ccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHH---Hhc-
Confidence 643 33333333333211 122222211 1 1121233333332 221
Q ss_pred cCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 212 KLPFLPGEGPYGLIICPSRELARQTHDIIQ 241 (252)
Q Consensus 212 ~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~ 241 (252)
...+++|||+|-..+..+++.|+
T Consensus 329 -------~~~KiiVF~sT~~~vk~~~~lL~ 351 (543)
T KOG0342|consen 329 -------KRYKIIVFFSTCMSVKFHAELLN 351 (543)
T ss_pred -------CCceEEEEechhhHHHHHHHHHh
Confidence 12579999999999999998887
No 5
>KOG0335|consensus
Probab=99.97 E-value=6.2e-31 Score=222.10 Aligned_cols=230 Identities=20% Similarity=0.263 Sum_probs=171.8
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCC--CCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcc
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPG--EGPYGLIICPSRELARQTHDIIQYYCAALPIPLR 78 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~--~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~ 78 (252)
||.+..|+|++++|+||||||.||++|++.+++........... .+|++||++||||||.|++++++++.-..+ ++
T Consensus 105 ip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~--~~ 182 (482)
T KOG0335|consen 105 IPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSG--MK 182 (482)
T ss_pred cceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhccccc--ce
Confidence 78999999999999999999999999999999987654333333 369999999999999999999999987776 89
Q ss_pred eeeeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCccccccc-CCCCHHHHH
Q psy7786 79 TCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRL-MKLPESLVR 157 (252)
Q Consensus 79 ~~~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~-~~l~~~l~~ 157 (252)
+..+|||.+...+.+...+++||. ++| ||+|.++.++....+.+ ++++|+||+ ++|.+ |+|.+++.+
T Consensus 183 ~~~~ygg~~~~~q~~~~~~gcdIl--vaT----pGrL~d~~e~g~i~l~~-~k~~vLDEA-----DrMlD~mgF~p~Ir~ 250 (482)
T KOG0335|consen 183 SVVVYGGTDLGAQLRFIKRGCDIL--VAT----PGRLKDLIERGKISLDN-CKFLVLDEA-----DRMLDEMGFEPQIRK 250 (482)
T ss_pred eeeeeCCcchhhhhhhhccCccEE--Eec----Cchhhhhhhcceeehhh-CcEEEecch-----HHhhhhccccccHHH
Confidence 999999999999999999999995 555 99999999999999998 999999998 89998 999999988
Q ss_pred HHHHCCC-------------CCChHHHHhhhhhhhcCCcEEEEccCCCch-----hHHh-----HHHHHHHHHhhhccC-
Q psy7786 158 ALEAKGI-------------KKPTPIQVQGIPAALSGRDIIGIAFTGSGK-----TLVF-----VLPILMFCLEQETKL- 213 (252)
Q Consensus 158 ~l~~~~~-------------~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gK-----t~~~-----~~~~l~~i~~~~~~~- 213 (252)
++...+. ..|..+|........+....+.....|+.. ...| ..+.+..++.....-
T Consensus 251 iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~ 330 (482)
T KOG0335|consen 251 IVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPP 330 (482)
T ss_pred HhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCc
Confidence 8877754 235566664333333333344333333221 0111 122233222211100
Q ss_pred CCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 214 PFLPGEGPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 214 ~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
.......-.++|||.|++.|.+++..+...+
T Consensus 331 ~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~ 361 (482)
T KOG0335|consen 331 SDGEPKWEKTLVFVETKRGADELAAFLSSNG 361 (482)
T ss_pred ccCCcccceEEEEeeccchhhHHHHHHhcCC
Confidence 0011112379999999999999999987543
No 6
>KOG0348|consensus
Probab=99.97 E-value=8.2e-31 Score=220.79 Aligned_cols=166 Identities=28% Similarity=0.389 Sum_probs=138.1
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.+++|||++|.|+||||||+||++|+++.+..-..+.. ..+|+.||||+||||||.|+|+.+.+|.+...+ |-..
T Consensus 168 IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~--Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hW-IVPg 244 (708)
T KOG0348|consen 168 IPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQ--RSDGPYALVIVPTRELALQIYETVQKLLKPFHW-IVPG 244 (708)
T ss_pred hhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcccc--ccCCceEEEEechHHHHHHHHHHHHHHhcCceE-Eeec
Confidence 7999999999999999999999999999999976543322 446999999999999999999999999988775 5556
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
.+.||...+...+.+++|++|. |.| ||||+++...-...-...++++|.||+ +++.++||..++-.++.
T Consensus 245 ~lmGGEkkKSEKARLRKGiNIL--IgT----PGRLvDHLknT~~i~~s~LRwlVlDEa-----DrlleLGfekdit~Il~ 313 (708)
T KOG0348|consen 245 VLMGGEKKKSEKARLRKGINIL--IGT----PGRLVDHLKNTKSIKFSRLRWLVLDEA-----DRLLELGFEKDITQILK 313 (708)
T ss_pred eeecccccccHHHHHhcCceEE--EcC----chHHHHHHhccchheeeeeeEEEecch-----hHHHhccchhhHHHHHH
Confidence 7899999999999999999984 554 999999998865554455999999998 99999999999966664
Q ss_pred HC---------CCCCChHHHHhhhhhhhc
Q psy7786 161 AK---------GIKKPTPIQVQGIPAALS 180 (252)
Q Consensus 161 ~~---------~~~~p~~iQ~~~~p~~~~ 180 (252)
.. ..+.|...|...+++++.
T Consensus 314 ~v~~~~~~e~~~~~lp~q~q~mLlSATLt 342 (708)
T KOG0348|consen 314 AVHSIQNAECKDPKLPHQLQNMLLSATLT 342 (708)
T ss_pred HHhhccchhcccccccHHHHhHhhhhhhH
Confidence 43 133455677777787764
No 7
>KOG0338|consensus
Probab=99.97 E-value=6e-32 Score=226.51 Aligned_cols=157 Identities=24% Similarity=0.290 Sum_probs=130.8
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||..+-|||+++||-||||||.||.+|++.+++..+++ ....++||++||||||.|++++.++++.++. +.++
T Consensus 212 IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~-----~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~--I~~~ 284 (691)
T KOG0338|consen 212 IPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK-----VAATRVLVLVPTRELAIQVHSVTKQLAQFTD--ITVG 284 (691)
T ss_pred ccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc-----CcceeEEEEeccHHHHHHHHHHHHHHHhhcc--ceee
Confidence 79999999999999999999999999999999987653 2457899999999999999999999999998 9999
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
.++||-+.+.|-+.|+..|||+ |+| |||++++...-...-..++.++|.||+ ++|.+-+|..++-+++.
T Consensus 285 L~vGGL~lk~QE~~LRs~PDIV--IAT----PGRlIDHlrNs~sf~ldsiEVLvlDEA-----DRMLeegFademnEii~ 353 (691)
T KOG0338|consen 285 LAVGGLDLKAQEAVLRSRPDIV--IAT----PGRLIDHLRNSPSFNLDSIEVLVLDEA-----DRMLEEGFADEMNEIIR 353 (691)
T ss_pred eeecCccHHHHHHHHhhCCCEE--Eec----chhHHHHhccCCCccccceeEEEechH-----HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999995 666 999999887754443444999999998 77777777777655554
Q ss_pred HCCCCCChHHHHhhhhhhh
Q psy7786 161 AKGIKKPTPIQVQGIPAAL 179 (252)
Q Consensus 161 ~~~~~~p~~iQ~~~~p~~~ 179 (252)
- .|..-|...+++++
T Consensus 354 l----cpk~RQTmLFSATM 368 (691)
T KOG0338|consen 354 L----CPKNRQTMLFSATM 368 (691)
T ss_pred h----ccccccceeehhhh
Confidence 4 35555555555544
No 8
>KOG0345|consensus
Probab=99.97 E-value=1.3e-30 Score=216.63 Aligned_cols=224 Identities=25% Similarity=0.367 Sum_probs=156.6
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.+++++|+++.|+||||||+||++|++..+.....+.+. ..+.||||+||||||.||.+++..|.+++. ++.+.
T Consensus 37 IPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~---~~vgalIIsPTRELa~QI~~V~~~F~~~l~-~l~~~ 112 (567)
T KOG0345|consen 37 IPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPP---GQVGALIISPTRELARQIREVAQPFLEHLP-NLNCE 112 (567)
T ss_pred hHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCc---cceeEEEecCcHHHHHHHHHHHHHHHHhhh-ccceE
Confidence 79999999999999999999999999999998665443222 268899999999999999999999999875 49999
Q ss_pred eeeCCcccCcchhhhhh-cccccCCccccccCCccccCCChhHHHHHh-hhhceeeccCCCCCcccccccCCCCHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKK-GIQYNDPIKTSWRAPRCILSLPDQVHDIIR-RNLRILVEGDDVPPACCSFRLMKLPESLVRA 158 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~-~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~-~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~ 158 (252)
+++||.+.++....+++ ++.|. |+| ||||.++..+....+. +.+.++|+||+ +++.+|||...+..+
T Consensus 113 l~vGG~~v~~Di~~fkee~~nIl--VgT----PGRL~di~~~~~~~l~~rsLe~LVLDEA-----DrLldmgFe~~~n~I 181 (567)
T KOG0345|consen 113 LLVGGRSVEEDIKTFKEEGPNIL--VGT----PGRLLDILQREAEKLSFRSLEILVLDEA-----DRLLDMGFEASVNTI 181 (567)
T ss_pred EEecCccHHHHHHHHHHhCCcEE--EeC----chhHHHHHhchhhhccccccceEEecch-----HhHhcccHHHHHHHH
Confidence 99999999988888865 56663 444 9999998887544443 34999999998 999999999999888
Q ss_pred HHHCCCCCCh----HHHHhhhhhh-hcC-CcEEEEccCC-------CchhHHhH-------HHHHHHHHhhhccCCCCCC
Q psy7786 159 LEAKGIKKPT----PIQVQGIPAA-LSG-RDIIGIAFTG-------SGKTLVFV-------LPILMFCLEQETKLPFLPG 218 (252)
Q Consensus 159 l~~~~~~~p~----~iQ~~~~p~~-~~~-~~~~~~~~~g-------~gKt~~~~-------~~~l~~i~~~~~~~~~~~~ 218 (252)
+....=..-| .-|.....-+ ..| +|-+-+.... ++-...|+ ...+.+++.+.
T Consensus 182 Ls~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~-------- 253 (567)
T KOG0345|consen 182 LSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNN-------- 253 (567)
T ss_pred HHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhcc--------
Confidence 7765211111 1111111111 011 2222111111 11111111 22333333332
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHHHHhhC
Q psy7786 219 EGPYGLIICPSRELARQTHDIIQYYCAAL 247 (252)
Q Consensus 219 ~~~~~LIf~~tr~~a~~i~~~l~~l~~~~ 247 (252)
...++|||.||..-++.-...+..+....
T Consensus 254 ~~kK~iVFF~TCasVeYf~~~~~~~l~~~ 282 (567)
T KOG0345|consen 254 KDKKCIVFFPTCASVEYFGKLFSRLLKKR 282 (567)
T ss_pred ccccEEEEecCcchHHHHHHHHHHHhCCC
Confidence 23579999999999999998888774443
No 9
>KOG0328|consensus
Probab=99.97 E-value=4.1e-32 Score=212.70 Aligned_cols=203 Identities=19% Similarity=0.221 Sum_probs=160.1
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||++++|||++++|++|+|||.+|.+.+++.+.... +..+|||++||||||.|+.+++..++.+++ +.+.
T Consensus 58 i~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~--------r~tQ~lilsPTRELa~Qi~~vi~alg~~mn--vq~h 127 (400)
T KOG0328|consen 58 IPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISV--------RETQALILSPTRELAVQIQKVILALGDYMN--VQCH 127 (400)
T ss_pred hhhhhcccceEEEecCCCCceEEEEeeeeeeccccc--------ceeeEEEecChHHHHHHHHHHHHHhccccc--ceEE
Confidence 689999999999999999999999999999887655 368999999999999999999999999999 8999
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
.+.||.+..+.++.+..|+++ +.++||++.++.++.....+. ++.+|+||+ +.|.+-||..++.+.+.
T Consensus 128 acigg~n~gedikkld~G~hv------VsGtPGrv~dmikr~~L~tr~-vkmlVLDEa-----DemL~kgfk~Qiydiyr 195 (400)
T KOG0328|consen 128 ACIGGKNLGEDIKKLDYGQHV------VSGTPGRVLDMIKRRSLRTRA-VKMLVLDEA-----DEMLNKGFKEQIYDIYR 195 (400)
T ss_pred EEecCCccchhhhhhcccceE------eeCCCchHHHHHHhccccccc-eeEEEeccH-----HHHHHhhHHHHHHHHHH
Confidence 999999999999999988887 336699999999999988888 999999998 77777788888877776
Q ss_pred HCCCCCChHHHHhhhhhhhcC----------------------------CcEEEEccCCCchhHHhHHHHHHHHHhhhcc
Q psy7786 161 AKGIKKPTPIQVQGIPAALSG----------------------------RDIIGIAFTGSGKTLVFVLPILMFCLEQETK 212 (252)
Q Consensus 161 ~~~~~~p~~iQ~~~~p~~~~~----------------------------~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~ 212 (252)
.. |...|...++++++. +.+++......+| ...+..+++..
T Consensus 196 ~l----p~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewK-----fdtLcdLYd~L-- 264 (400)
T KOG0328|consen 196 YL----PPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWK-----FDTLCDLYDTL-- 264 (400)
T ss_pred hC----CCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhh-----HhHHHHHhhhh--
Confidence 53 434444444443321 1222222222333 44444444432
Q ss_pred CCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 213 LPFLPGEGPYGLIICPSRELARQTHDIIQY 242 (252)
Q Consensus 213 ~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~ 242 (252)
.-.|++||||||..++++.+.++.
T Consensus 265 ------tItQavIFcnTk~kVdwLtekm~~ 288 (400)
T KOG0328|consen 265 ------TITQAVIFCNTKRKVDWLTEKMRE 288 (400)
T ss_pred ------ehheEEEEecccchhhHHHHHHHh
Confidence 235899999999999999999875
No 10
>KOG0343|consensus
Probab=99.96 E-value=1.3e-30 Score=220.44 Aligned_cols=217 Identities=22% Similarity=0.281 Sum_probs=163.3
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||..|.|+|++..|.||||||+||++|+++++.+... .+.+|..||||+||||||.|+++++.+.+++.+ +.+.
T Consensus 100 Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kW----s~~DGlGalIISPTRELA~QtFevL~kvgk~h~--fSaG 173 (758)
T KOG0343|consen 100 IPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKW----SPTDGLGALIISPTRELALQTFEVLNKVGKHHD--FSAG 173 (758)
T ss_pred cchhccCcccccccccCCCceeeehHHHHHHHHHcCC----CCCCCceeEEecchHHHHHHHHHHHHHHhhccc--cccc
Confidence 7999999999999999999999999999999987654 345799999999999999999999999999988 8999
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
.+.||.+.+.....+.+ ++|. |+| ||||+.+.++...+-..++.++|+||+ +++.+|||..++-.++.
T Consensus 174 LiiGG~~~k~E~eRi~~-mNIL--VCT----PGRLLQHmde~~~f~t~~lQmLvLDEA-----DR~LDMGFk~tL~~Ii~ 241 (758)
T KOG0343|consen 174 LIIGGKDVKFELERISQ-MNIL--VCT----PGRLLQHMDENPNFSTSNLQMLVLDEA-----DRMLDMGFKKTLNAIIE 241 (758)
T ss_pred eeecCchhHHHHHhhhc-CCeE--Eec----hHHHHHHhhhcCCCCCCcceEEEeccH-----HHHHHHhHHHHHHHHHH
Confidence 99999888777666654 3442 444 999999988877666667999999998 99999999999877776
Q ss_pred HCCCCCChHHHHhhhhhhhc------------CCcEEEEccC---C-------------CchhHHhHHHHHHHHHhhhcc
Q psy7786 161 AKGIKKPTPIQVQGIPAALS------------GRDIIGIAFT---G-------------SGKTLVFVLPILMFCLEQETK 212 (252)
Q Consensus 161 ~~~~~~p~~iQ~~~~p~~~~------------~~~~~~~~~~---g-------------~gKt~~~~~~~l~~i~~~~~~ 212 (252)
.. |..-|...++++.. ....+-.... + .+.-+.+++..+ ...
T Consensus 242 ~l----P~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI----~sh-- 311 (758)
T KOG0343|consen 242 NL----PKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFI----KSH-- 311 (758)
T ss_pred hC----ChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHH----Hhc--
Confidence 63 44444444433321 1111111111 1 112233333333 222
Q ss_pred CCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHhhCCCCC
Q psy7786 213 LPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIGS 251 (252)
Q Consensus 213 ~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~~~~i~~ 251 (252)
...+.|||..|...+..+++.++++-+.+++-+
T Consensus 312 ------lk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~ 344 (758)
T KOG0343|consen 312 ------LKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLA 344 (758)
T ss_pred ------cccceEEEEehhhHHHHHHHHHHhcCCCCceee
Confidence 134689999999999999999999988877644
No 11
>KOG0341|consensus
Probab=99.96 E-value=3.8e-30 Score=209.63 Aligned_cols=225 Identities=37% Similarity=0.576 Sum_probs=176.7
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCC----CC
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALP----IP 76 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~----~~ 76 (252)
||.+++|||.+.+|-||||||+.|+||++-..+......|+....||.+|||||+||||.|+++.+..+...+. ..
T Consensus 201 lPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~ 280 (610)
T KOG0341|consen 201 LPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPE 280 (610)
T ss_pred cceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 68999999999999999999999999999999999999999999999999999999999999999998877653 24
Q ss_pred cceeeeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHH
Q psy7786 77 LRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLV 156 (252)
Q Consensus 77 ~~~~~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~ 156 (252)
+|+..+.||.+..+|.+.+++|++|. ++| ||||.++..+....+.- +++++.||+ ++|.+|||..++.
T Consensus 281 lRs~LciGG~~v~eql~~v~~GvHiv--VAT----PGRL~DmL~KK~~sLd~-CRyL~lDEA-----DRmiDmGFEddir 348 (610)
T KOG0341|consen 281 LRSLLCIGGVPVREQLDVVRRGVHIV--VAT----PGRLMDMLAKKIMSLDA-CRYLTLDEA-----DRMIDMGFEDDIR 348 (610)
T ss_pred hhhhhhhcCccHHHHHHHHhcCeeEE--EcC----cchHHHHHHHhhccHHH-HHHhhhhhH-----HHHhhccchhhHH
Confidence 89999999999999999999999984 555 99999999998888887 899999998 9999999999998
Q ss_pred HHHHHCC---------CCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccC---CCCCCCCcEEE
Q psy7786 157 RALEAKG---------IKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKL---PFLPGEGPYGL 224 (252)
Q Consensus 157 ~~l~~~~---------~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~---~~~~~~~~~~L 224 (252)
..+.... ...|..+|.-+-+++....-+ .....|-..--.+.-+..+....+.. .+.....|.+|
T Consensus 349 ~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtv---NVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT~PpVL 425 (610)
T KOG0341|consen 349 TIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTV---NVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKTSPPVL 425 (610)
T ss_pred HHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEE---ecccccccchhHHHHHHHHHhhhhhhhHHHHhccCCCceE
Confidence 7776553 346777877666655543211 11112221122222232222221111 12334568899
Q ss_pred EEcCcHHHHHHHHHHH
Q psy7786 225 IICPSRELARQTHDII 240 (252)
Q Consensus 225 If~~tr~~a~~i~~~l 240 (252)
|||..+..++.|+++|
T Consensus 426 IFaEkK~DVD~IhEYL 441 (610)
T KOG0341|consen 426 IFAEKKADVDDIHEYL 441 (610)
T ss_pred EEeccccChHHHHHHH
Confidence 9999999999999987
No 12
>KOG0346|consensus
Probab=99.96 E-value=2.7e-29 Score=207.28 Aligned_cols=214 Identities=19% Similarity=0.188 Sum_probs=153.8
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.+++|||+++.|.||||||+||++|++|.++...... ....++.|+|++||||||.|+++++.+|..+.+..+++.
T Consensus 50 IplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~--~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~ 127 (569)
T KOG0346|consen 50 IPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN--DGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAI 127 (569)
T ss_pred cchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc--cccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 799999999999999999999999999999999876543 345689999999999999999999999999988668888
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
-+..+.+.......+...+||+ +. ||++++.+...........++++|.||+ +-+...|..+++.....
T Consensus 128 nl~s~~sdsv~~~~L~d~pdIv--V~----TP~~ll~~~~~~~~~~~~~l~~LVvDEA-----DLllsfGYeedlk~l~~ 196 (569)
T KOG0346|consen 128 NLASSMSDSVNSVALMDLPDIV--VA----TPAKLLRHLAAGVLEYLDSLSFLVVDEA-----DLLLSFGYEEDLKKLRS 196 (569)
T ss_pred hhhcccchHHHHHHHccCCCeE--Ee----ChHHHHHHHhhccchhhhheeeEEechh-----hhhhhcccHHHHHHHHH
Confidence 7777766666667777778873 33 4888888877776555556999999997 66777777777654444
Q ss_pred HCCCCCChHHHHhhhhhhhcC-------------------------Cc----EEEEccCCCchhHHhHHHHHHHHHhhhc
Q psy7786 161 AKGIKKPTPIQVQGIPAALSG-------------------------RD----IIGIAFTGSGKTLVFVLPILMFCLEQET 211 (252)
Q Consensus 161 ~~~~~~p~~iQ~~~~p~~~~~-------------------------~~----~~~~~~~g~gKt~~~~~~~l~~i~~~~~ 211 (252)
. .|...|.-.+++++.. .| ..+. .....| +..+..++..-+-
T Consensus 197 ~----LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~-cse~DK-flllyallKL~LI--- 267 (569)
T KOG0346|consen 197 H----LPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVK-CSEEDK-FLLLYALLKLRLI--- 267 (569)
T ss_pred h----CCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEE-eccchh-HHHHHHHHHHHHh---
Confidence 3 3555555555555432 01 1111 112333 2222333322111
Q ss_pred cCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 212 KLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 212 ~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
..+.|||+||.+.|..+.-.|+.||
T Consensus 268 --------~gKsliFVNtIdr~YrLkLfLeqFG 292 (569)
T KOG0346|consen 268 --------RGKSLIFVNTIDRCYRLKLFLEQFG 292 (569)
T ss_pred --------cCceEEEEechhhhHHHHHHHHHhC
Confidence 3468999999999998877765543
No 13
>KOG0333|consensus
Probab=99.96 E-value=3.3e-30 Score=216.68 Aligned_cols=151 Identities=26% Similarity=0.357 Sum_probs=134.1
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCC-CCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcce
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLP-FLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRT 79 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~-~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~ 79 (252)
||..++.+|+|..|.||||||+||++|++..+...+.-.. ..+-.+|+|+|++||||||+||.++-.+|++.++ +++
T Consensus 276 ipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg--~r~ 353 (673)
T KOG0333|consen 276 IPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLG--IRT 353 (673)
T ss_pred ccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhccccc--ceE
Confidence 7889999999999999999999999999988876553222 1334699999999999999999999999999998 899
Q ss_pred eeeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHH
Q psy7786 80 CLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRAL 159 (252)
Q Consensus 80 ~~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l 159 (252)
+.++||.+.++|--++..+|+|+ |+| ||+|++-.++....+.. +.++|+||+ ++|.+|||.+++.+.|
T Consensus 354 vsvigg~s~EEq~fqls~gceiv--iat----PgrLid~Lenr~lvl~q-ctyvvldea-----drmiDmgfE~dv~~iL 421 (673)
T KOG0333|consen 354 VSVIGGLSFEEQGFQLSMGCEIV--IAT----PGRLIDSLENRYLVLNQ-CTYVVLDEA-----DRMIDMGFEPDVQKIL 421 (673)
T ss_pred EEEecccchhhhhhhhhccceee--ecC----chHHHHHHHHHHHHhcc-CceEeccch-----hhhhcccccHHHHHHH
Confidence 99999999999988999999985 666 99999999998888887 999999998 9999999999999999
Q ss_pred HHCCCC
Q psy7786 160 EAKGIK 165 (252)
Q Consensus 160 ~~~~~~ 165 (252)
..+...
T Consensus 422 ~~mPss 427 (673)
T KOG0333|consen 422 EQMPSS 427 (673)
T ss_pred HhCCcc
Confidence 887533
No 14
>KOG0340|consensus
Probab=99.96 E-value=3.1e-29 Score=201.96 Aligned_cols=209 Identities=23% Similarity=0.255 Sum_probs=154.5
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.+|+|+|++.+|+||||||.||.+|+++++..++. +..++|++||||||.|+.+.+..+++.++ +++.
T Consensus 38 IpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~--------giFalvlTPTrELA~QiaEQF~alGk~l~--lK~~ 107 (442)
T KOG0340|consen 38 IPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPY--------GIFALVLTPTRELALQIAEQFIALGKLLN--LKVS 107 (442)
T ss_pred hHHHhcccccccccccCCCcchhhhHHHHHhhccCCC--------cceEEEecchHHHHHHHHHHHHHhccccc--ceEE
Confidence 7999999999999999999999999999999988774 88999999999999999999999999998 8999
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhH----HHHHhhhhceeeccCCCCCcccccccCCCCHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQV----HDIIRRNLRILVEGDDVPPACCSFRLMKLPESLV 156 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~----~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~ 156 (252)
+++||++.-.+...|.+.+|++ ++| ||++-++.... ...+++ ++++|.||+ +++++-.|.+.+.
T Consensus 108 vivGG~d~i~qa~~L~~rPHvV--vat----PGRlad~l~sn~~~~~~~~~r-lkflVlDEA-----DrvL~~~f~d~L~ 175 (442)
T KOG0340|consen 108 VIVGGTDMIMQAAILSDRPHVV--VAT----PGRLADHLSSNLGVCSWIFQR-LKFLVLDEA-----DRVLAGCFPDILE 175 (442)
T ss_pred EEEccHHHhhhhhhcccCCCeE--ecC----ccccccccccCCccchhhhhc-eeeEEecch-----hhhhccchhhHHh
Confidence 9999999999999999988873 444 99998887665 334454 999999998 7788777877764
Q ss_pred HHHHHCCCCCChHHHHhhhhhhhcC-----------C--cEEEEccCCC----------------chhHHhHHHHHHHHH
Q psy7786 157 RALEAKGIKKPTPIQVQGIPAALSG-----------R--DIIGIAFTGS----------------GKTLVFVLPILMFCL 207 (252)
Q Consensus 157 ~~l~~~~~~~p~~iQ~~~~p~~~~~-----------~--~~~~~~~~g~----------------gKt~~~~~~~l~~i~ 207 (252)
..+.. .|.+-|...+++++.. + -.......+. +| .+|+...+....
T Consensus 176 ~i~e~----lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vk-daYLv~~Lr~~~ 250 (442)
T KOG0340|consen 176 GIEEC----LPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVK-DAYLVHLLRDFE 250 (442)
T ss_pred hhhcc----CCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhh-HHHHHHHHhhhh
Confidence 44433 3444444444444321 1 1111111111 11 223333332211
Q ss_pred hhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHh
Q psy7786 208 EQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCA 245 (252)
Q Consensus 208 ~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~ 245 (252)
++....++||++|...|+.++..|+.+.-
T Consensus 251 ---------~~~~~simIFvnttr~cQ~l~~~l~~le~ 279 (442)
T KOG0340|consen 251 ---------NKENGSIMIFVNTTRECQLLSMTLKNLEV 279 (442)
T ss_pred ---------hccCceEEEEeehhHHHHHHHHHHhhhce
Confidence 12345699999999999999999887653
No 15
>KOG0326|consensus
Probab=99.96 E-value=1e-29 Score=202.40 Aligned_cols=205 Identities=19% Similarity=0.223 Sum_probs=156.7
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.++.|+|+++.|+.|+|||.||++|+++.+.... ...+++|++||||||.|+...++.++++++ +++.
T Consensus 116 IPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~--------~~IQ~~ilVPtrelALQtSqvc~~lskh~~--i~vm 185 (459)
T KOG0326|consen 116 IPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK--------NVIQAIILVPTRELALQTSQVCKELSKHLG--IKVM 185 (459)
T ss_pred cceeecchhhhhhccCCCCCccceechhhhhcCccc--------cceeEEEEeecchhhHHHHHHHHHHhcccC--eEEE
Confidence 799999999999999999999999999999987655 578999999999999999999999999998 8999
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
+.+||++..+.+-.+.+++++. ++| |||++++.++....++. ..++|.||+ +.+.+..|.+.+.+.+.
T Consensus 186 vttGGT~lrDDI~Rl~~~VH~~--vgT----PGRIlDL~~KgVa~ls~-c~~lV~DEA-----DKlLs~~F~~~~e~li~ 253 (459)
T KOG0326|consen 186 VTTGGTSLRDDIMRLNQTVHLV--VGT----PGRILDLAKKGVADLSD-CVILVMDEA-----DKLLSVDFQPIVEKLIS 253 (459)
T ss_pred EecCCcccccceeeecCceEEE--EcC----ChhHHHHHhcccccchh-ceEEEechh-----hhhhchhhhhHHHHHHH
Confidence 9999999999999999998873 444 99999999999999988 899999997 66665555555544443
Q ss_pred HCCCCCChHHHHhhhhhhhc--------------------------CCcEEEEccCCCchhHHhHHHHHHHHHhhhccCC
Q psy7786 161 AKGIKKPTPIQVQGIPAALS--------------------------GRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLP 214 (252)
Q Consensus 161 ~~~~~~p~~iQ~~~~p~~~~--------------------------~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~ 214 (252)
. .|..-|....+++++ |.-........+-| +..+..++.
T Consensus 254 ~----lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qK-----vhCLntLfs------ 318 (459)
T KOG0326|consen 254 F----LPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQK-----VHCLNTLFS------ 318 (459)
T ss_pred h----CCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhh-----hhhHHHHHH------
Confidence 3 344444444433332 21222222233333 222222222
Q ss_pred CCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 215 FLPGEGPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 215 ~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
+.+-.|++||||+...++.+++.+.++|
T Consensus 319 --kLqINQsIIFCNS~~rVELLAkKITelG 346 (459)
T KOG0326|consen 319 --KLQINQSIIFCNSTNRVELLAKKITELG 346 (459)
T ss_pred --HhcccceEEEeccchHhHHHHHHHHhcc
Confidence 2345689999999999999999887665
No 16
>PTZ00110 helicase; Provisional
Probab=99.95 E-value=4.5e-28 Score=215.87 Aligned_cols=145 Identities=29% Similarity=0.454 Sum_probs=122.5
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.+++|+|++++||||||||++|++|++.+++..... ....++++|||+||||||.|+.+.+++++...+ +++.
T Consensus 161 ip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~---~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~--i~~~ 235 (545)
T PTZ00110 161 WPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLL---RYGDGPIVLVLAPTRELAEQIREQCNKFGASSK--IRNT 235 (545)
T ss_pred HHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccc---cCCCCcEEEEECChHHHHHHHHHHHHHHhcccC--ccEE
Confidence 58899999999999999999999999999988754321 123578999999999999999999999988776 8899
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
+++||.+...+...+.++++|. |. ||+++.++..+....+++ +.++|.||+ +.+.+++|.+++.+.+.
T Consensus 236 ~~~gg~~~~~q~~~l~~~~~Il--Va----TPgrL~d~l~~~~~~l~~-v~~lViDEA-----d~mld~gf~~~i~~il~ 303 (545)
T PTZ00110 236 VAYGGVPKRGQIYALRRGVEIL--IA----CPGRLIDFLESNVTNLRR-VTYLVLDEA-----DRMLDMGFEPQIRKIVS 303 (545)
T ss_pred EEeCCCCHHHHHHHHHcCCCEE--EE----CHHHHHHHHHcCCCChhh-CcEEEeehH-----HhhhhcchHHHHHHHHH
Confidence 9999999888888888888873 44 499998887766666666 899999998 88999999998877776
Q ss_pred HC
Q psy7786 161 AK 162 (252)
Q Consensus 161 ~~ 162 (252)
..
T Consensus 304 ~~ 305 (545)
T PTZ00110 304 QI 305 (545)
T ss_pred hC
Confidence 54
No 17
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=2.2e-28 Score=212.88 Aligned_cols=147 Identities=23% Similarity=0.312 Sum_probs=119.0
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.+++|+|++++||||||||++|++|+++.++..... ......++++|||+||||||.|+++.++.+++..+ +++.
T Consensus 39 ip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~-~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~--~~v~ 115 (423)
T PRK04837 39 LPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAP-EDRKVNQPRALIMAPTRELAVQIHADAEPLAQATG--LKLG 115 (423)
T ss_pred HHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccc-cccccCCceEEEECCcHHHHHHHHHHHHHHhccCC--ceEE
Confidence 57899999999999999999999999999999765421 11112468999999999999999999999999887 8899
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
.++||.+...+.+.++++++|. |. ||+++.++..+....+.+ ++++|.||+ +.+.+.+|..++...+.
T Consensus 116 ~~~gg~~~~~~~~~l~~~~~Il--V~----TP~~l~~~l~~~~~~l~~-v~~lViDEa-----d~l~~~~f~~~i~~i~~ 183 (423)
T PRK04837 116 LAYGGDGYDKQLKVLESGVDIL--IG----TTGRLIDYAKQNHINLGA-IQVVVLDEA-----DRMFDLGFIKDIRWLFR 183 (423)
T ss_pred EEECCCCHHHHHHHhcCCCCEE--EE----CHHHHHHHHHcCCccccc-ccEEEEecH-----HHHhhcccHHHHHHHHH
Confidence 9999998888888888877773 33 488887776655555555 899999997 77888888888766665
Q ss_pred HC
Q psy7786 161 AK 162 (252)
Q Consensus 161 ~~ 162 (252)
..
T Consensus 184 ~~ 185 (423)
T PRK04837 184 RM 185 (423)
T ss_pred hC
Confidence 43
No 18
>KOG0339|consensus
Probab=99.95 E-value=4e-28 Score=203.59 Aligned_cols=144 Identities=29% Similarity=0.438 Sum_probs=130.0
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
+|..++|+|++-+|.||||||.||+.|++.+++.++.- .++++|.+||++||||||.||+.++++|++..| ++++
T Consensus 254 lptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL---~~g~gPi~vilvPTrela~Qi~~eaKkf~K~yg--l~~v 328 (731)
T KOG0339|consen 254 LPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPEL---KPGEGPIGVILVPTRELASQIFSEAKKFGKAYG--LRVV 328 (731)
T ss_pred cccccccccchheeeccCcchhHHHHHHHHHhcchhhh---cCCCCCeEEEEeccHHHHHHHHHHHHHhhhhcc--ceEE
Confidence 58899999999999999999999999999999876642 345799999999999999999999999999888 9999
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
++|||.+.-+|...|+.++.|+ ++| |+||+++.......+.+ +.++|.||+ ++|.++||.+++..+..
T Consensus 329 ~~ygGgsk~eQ~k~Lk~g~Eiv--VaT----PgRlid~VkmKatn~~r-vS~LV~DEa-----drmfdmGfe~qVrSI~~ 396 (731)
T KOG0339|consen 329 AVYGGGSKWEQSKELKEGAEIV--VAT----PGRLIDMVKMKATNLSR-VSYLVLDEA-----DRMFDMGFEPQVRSIKQ 396 (731)
T ss_pred EeecCCcHHHHHHhhhcCCeEE--Eec----hHHHHHHHHhhccccee-eeEEEEech-----hhhhccccHHHHHHHHh
Confidence 9999999999999999999884 565 99999999999999998 999999998 99999999999855444
Q ss_pred H
Q psy7786 161 A 161 (252)
Q Consensus 161 ~ 161 (252)
.
T Consensus 397 h 397 (731)
T KOG0339|consen 397 H 397 (731)
T ss_pred h
Confidence 3
No 19
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=1.1e-27 Score=214.28 Aligned_cols=147 Identities=25% Similarity=0.329 Sum_probs=117.1
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.+++|+|++++||||||||++|++|++++++..... .......+++|||+||||||.|+++.+++++..++ +++.
T Consensus 40 ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~-~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~--i~v~ 116 (572)
T PRK04537 40 LPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPAL-ADRKPEDPRALILAPTRELAIQIHKDAVKFGADLG--LRFA 116 (572)
T ss_pred HHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc-cccccCCceEEEEeCcHHHHHHHHHHHHHHhccCC--ceEE
Confidence 68899999999999999999999999999998764311 11122368999999999999999999999998877 8999
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHH-HHHhhhhceeeccCCCCCcccccccCCCCHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVH-DIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRAL 159 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~-~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l 159 (252)
.++||.++..+.+.++++++|. |. ||+++.++..+.. ..+. .++++|.||+ +.+.+.+|..++...+
T Consensus 117 ~l~Gg~~~~~q~~~l~~~~dIi--V~----TP~rL~~~l~~~~~~~l~-~v~~lViDEA-----h~lld~gf~~~i~~il 184 (572)
T PRK04537 117 LVYGGVDYDKQRELLQQGVDVI--IA----TPGRLIDYVKQHKVVSLH-ACEICVLDEA-----DRMFDLGFIKDIRFLL 184 (572)
T ss_pred EEECCCCHHHHHHHHhCCCCEE--EE----CHHHHHHHHHhccccchh-heeeeEecCH-----HHHhhcchHHHHHHHH
Confidence 9999999988888888877773 33 4888877665533 2344 4889999997 7788888888876666
Q ss_pred HHC
Q psy7786 160 EAK 162 (252)
Q Consensus 160 ~~~ 162 (252)
...
T Consensus 185 ~~l 187 (572)
T PRK04537 185 RRM 187 (572)
T ss_pred Hhc
Confidence 543
No 20
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.95 E-value=1.3e-27 Score=210.17 Aligned_cols=206 Identities=21% Similarity=0.273 Sum_probs=148.8
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.+++|+|++++||||||||++|.+|+++.+.... ..+++||++||||||.|+.+.++.+++... ++++.
T Consensus 35 i~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~--------~~~~~lil~PtreLa~Q~~~~~~~~~~~~~-~~~v~ 105 (460)
T PRK11776 35 LPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR--------FRVQALVLCPTRELADQVAKEIRRLARFIP-NIKVL 105 (460)
T ss_pred HHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc--------CCceEEEEeCCHHHHHHHHHHHHHHHhhCC-CcEEE
Confidence 577899999999999999999999999999885432 357899999999999999999999988764 38899
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
.++||.+...+.+.+.++++|. |. ||+++.++..+....+.+ ++++|.||+ +.+.+++|..++...+.
T Consensus 106 ~~~Gg~~~~~~~~~l~~~~~Iv--V~----Tp~rl~~~l~~~~~~l~~-l~~lViDEa-----d~~l~~g~~~~l~~i~~ 173 (460)
T PRK11776 106 TLCGGVPMGPQIDSLEHGAHII--VG----TPGRILDHLRKGTLDLDA-LNTLVLDEA-----DRMLDMGFQDAIDAIIR 173 (460)
T ss_pred EEECCCChHHHHHHhcCCCCEE--EE----ChHHHHHHHHcCCccHHH-CCEEEEECH-----HHHhCcCcHHHHHHHHH
Confidence 9999999988888888888773 33 488888877665555665 899999997 78889999888877776
Q ss_pred HCCCCCChHHHHhhhhhhhc-----------CCcEEEEc---------------cCCCchhHHhHHHHHHHHHhhhccCC
Q psy7786 161 AKGIKKPTPIQVQGIPAALS-----------GRDIIGIA---------------FTGSGKTLVFVLPILMFCLEQETKLP 214 (252)
Q Consensus 161 ~~~~~~p~~iQ~~~~p~~~~-----------~~~~~~~~---------------~~g~gKt~~~~~~~l~~i~~~~~~~~ 214 (252)
... ...|...+++++. .....+.. .....| ...+..++...
T Consensus 174 ~~~----~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k-----~~~l~~ll~~~---- 240 (460)
T PRK11776 174 QAP----ARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDER-----LPALQRLLLHH---- 240 (460)
T ss_pred hCC----cccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHH-----HHHHHHHHHhc----
Confidence 542 2222211221111 11111111 111112 33344444322
Q ss_pred CCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 215 FLPGEGPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 215 ~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
...++||||||++.|+.+++.|++.+
T Consensus 241 ----~~~~~lVF~~t~~~~~~l~~~L~~~~ 266 (460)
T PRK11776 241 ----QPESCVVFCNTKKECQEVADALNAQG 266 (460)
T ss_pred ----CCCceEEEECCHHHHHHHHHHHHhCC
Confidence 23469999999999999999997654
No 21
>KOG0336|consensus
Probab=99.94 E-value=1.6e-27 Score=195.51 Aligned_cols=211 Identities=24% Similarity=0.313 Sum_probs=160.6
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.+|+|+|++..|+||+|||++|++|-+.++...+.... +..++.+|+++||||||.|+..++++++ +-| .+..
T Consensus 251 WPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~--qr~~p~~lvl~ptreLalqie~e~~kys-yng--~ksv 325 (629)
T KOG0336|consen 251 WPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRRE--QRNGPGVLVLTPTRELALQIEGEVKKYS-YNG--LKSV 325 (629)
T ss_pred cceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhh--ccCCCceEEEeccHHHHHHHHhHHhHhh-hcC--cceE
Confidence 7999999999999999999999999999988877665433 4568999999999999999999998875 334 7889
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
+++||.+..+|.+.++++.+|. ++| |+++.++.-.....++. +.++|+||+ ++|.+|+|.+++.++|-
T Consensus 326 c~ygggnR~eqie~lkrgveii--iat----PgrlndL~~~n~i~l~s-iTYlVlDEA-----DrMLDMgFEpqIrkill 393 (629)
T KOG0336|consen 326 CVYGGGNRNEQIEDLKRGVEII--IAT----PGRLNDLQMDNVINLAS-ITYLVLDEA-----DRMLDMGFEPQIRKILL 393 (629)
T ss_pred EEecCCCchhHHHHHhcCceEE--eeC----CchHhhhhhcCeeeeee-eEEEEecch-----hhhhcccccHHHHHHhh
Confidence 9999999999999999999874 555 99999998888888888 999999998 99999999999998887
Q ss_pred HCCCCCChHHHHhhhhhhhc---------------C-CcEE--------EEccCCCchhHHhHHHHHHHHHhhhccCCCC
Q psy7786 161 AKGIKKPTPIQVQGIPAALS---------------G-RDII--------GIAFTGSGKTLVFVLPILMFCLEQETKLPFL 216 (252)
Q Consensus 161 ~~~~~~p~~iQ~~~~p~~~~---------------~-~~~~--------~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~ 216 (252)
..--...+..-+.+||.... | -|+. +...+.+.| +..+.....+.
T Consensus 394 diRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k-----~~~~~~f~~~m------ 462 (629)
T KOG0336|consen 394 DIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEK-----LEIVQFFVANM------ 462 (629)
T ss_pred hcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHH-----HHHHHHHHHhc------
Confidence 65433222222233332221 1 1111 122334444 33343333332
Q ss_pred CCCCcEEEEEcCcHHHHHHHHHHH
Q psy7786 217 PGEGPYGLIICPSRELARQTHDII 240 (252)
Q Consensus 217 ~~~~~~~LIf~~tr~~a~~i~~~l 240 (252)
....++||||..+..|+.+...+
T Consensus 463 -s~ndKvIiFv~~K~~AD~LSSd~ 485 (629)
T KOG0336|consen 463 -SSNDKVIIFVSRKVMADHLSSDF 485 (629)
T ss_pred -CCCceEEEEEechhhhhhccchh
Confidence 23568999999999999888765
No 22
>KOG0334|consensus
Probab=99.94 E-value=3.9e-27 Score=212.26 Aligned_cols=214 Identities=27% Similarity=0.378 Sum_probs=156.9
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||++++|||+|.+|.||||||++|+||++-+++.++ +....+||-++|++||||||.|+++.+++|++.++ ++++
T Consensus 396 iP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr---~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~--ir~v 470 (997)
T KOG0334|consen 396 IPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQR---PLEEGDGPIALILAPTRELAMQIHREVRKFLKLLG--IRVV 470 (997)
T ss_pred cchhccCcceEEeeccCCccchhhhcchhhhhhcCC---ChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcC--ceEE
Confidence 799999999999999999999999999995554433 34455799999999999999999999999999987 9999
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHH---HHHhhhhceeeccCCCCCcccccccCCCCHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVH---DIIRRNLRILVEGDDVPPACCSFRLMKLPESLVR 157 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~---~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~ 157 (252)
++|||+...++++.++++..|. |.| ||+.++..-... -++++ ..++|.||+ ++|.+++|.+++..
T Consensus 471 ~vygg~~~~~qiaelkRg~eIv--V~t----pGRmiD~l~~n~grvtnlrR-~t~lv~dea-----DrmfdmgfePq~~~ 538 (997)
T KOG0334|consen 471 CVYGGSGISQQIAELKRGAEIV--VCT----PGRMIDILCANSGRVTNLRR-VTYLVLDEA-----DRMFDMGFEPQITR 538 (997)
T ss_pred EecCCccHHHHHHHHhcCCceE--Eec----cchhhhhHhhcCCccccccc-cceeeechh-----hhhheeccCcccch
Confidence 9999999999999999998874 565 999887765433 34444 669999998 88889999999988
Q ss_pred HHHHCCCCCChHHHHhhhhhhh----------------cCC---------cEEEEccCCCchhHHhHHHHHHHHHhhhcc
Q psy7786 158 ALEAKGIKKPTPIQVQGIPAAL----------------SGR---------DIIGIAFTGSGKTLVFVLPILMFCLEQETK 212 (252)
Q Consensus 158 ~l~~~~~~~p~~iQ~~~~p~~~----------------~~~---------~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~ 212 (252)
++....-...+..-+.++|..+ .++ ++.++ .....| +.-+..+|.....
T Consensus 539 Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~-~~e~eK-f~kL~eLl~e~~e---- 612 (997)
T KOG0334|consen 539 ILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVC-AIENEK-FLKLLELLGERYE---- 612 (997)
T ss_pred HHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEe-cCchHH-HHHHHHHHHHHhh----
Confidence 7777643222222222222221 111 11111 112222 3334444433222
Q ss_pred CCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 213 LPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 213 ~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
..++||||...+.|+.+.+.|.+-+
T Consensus 613 -------~~~tiiFv~~qe~~d~l~~~L~~ag 637 (997)
T KOG0334|consen 613 -------DGKTIIFVDKQEKADALLRDLQKAG 637 (997)
T ss_pred -------cCCEEEEEcCchHHHHHHHHHHhcC
Confidence 4579999999999999999987543
No 23
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.94 E-value=3.1e-27 Score=207.16 Aligned_cols=146 Identities=26% Similarity=0.388 Sum_probs=117.6
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.+++|+|++++||||||||++|++|+++.+...... ......+++|||+||||||.|+.+.++.+.++++ +++.
T Consensus 32 i~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~--~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~--~~~~ 107 (456)
T PRK10590 32 IPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH--AKGRRPVRALILTPTRELAAQIGENVRDYSKYLN--IRSL 107 (456)
T ss_pred HHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc--cccCCCceEEEEeCcHHHHHHHHHHHHHHhccCC--CEEE
Confidence 57889999999999999999999999999998764321 1112356899999999999999999999998887 8888
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
.++||.+.+.+...+..+++|. |. ||+++.++.......+.+ +.++|.||+ +.+.+.++..++...+.
T Consensus 108 ~~~gg~~~~~~~~~l~~~~~Ii--V~----TP~rL~~~~~~~~~~l~~-v~~lViDEa-----h~ll~~~~~~~i~~il~ 175 (456)
T PRK10590 108 VVFGGVSINPQMMKLRGGVDVL--VA----TPGRLLDLEHQNAVKLDQ-VEILVLDEA-----DRMLDMGFIHDIRRVLA 175 (456)
T ss_pred EEECCcCHHHHHHHHcCCCcEE--EE----ChHHHHHHHHcCCccccc-ceEEEeecH-----HHHhccccHHHHHHHHH
Confidence 9999999888877887777773 33 488887776655555555 899999997 77888888777766665
Q ss_pred HC
Q psy7786 161 AK 162 (252)
Q Consensus 161 ~~ 162 (252)
..
T Consensus 176 ~l 177 (456)
T PRK10590 176 KL 177 (456)
T ss_pred hC
Confidence 54
No 24
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.94 E-value=6.1e-27 Score=211.17 Aligned_cols=229 Identities=15% Similarity=0.147 Sum_probs=155.2
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.+.+|+|++++||||||||+|.+||+++.+.... +....+++++|||+|.|+|++++..+++.+++.+| +.+.
T Consensus 31 ~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~---~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G--~~v~ 105 (814)
T COG1201 31 IPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG---KGKLEDGIYALYISPLKALNNDIRRRLEEPLRELG--IEVA 105 (814)
T ss_pred HHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc---CCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcC--Cccc
Confidence 578899999999999999999999999999998874 12234689999999999999999999999999999 6778
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCC--hhHHHHHhhhhceeeccCC------------------CC
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLP--DQVHDIIRRNLRILVEGDD------------------VP 140 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~--~~~~~~l~~~~~~~V~de~------------------~~ 140 (252)
+.+|+++..++.+..++++|| +. |||+.+.-+. .+....|++ ++++|.||- +.
T Consensus 106 vRhGDT~~~er~r~~~~PPdI---Li---TTPEsL~lll~~~~~r~~l~~-vr~VIVDEiHel~~sKRG~~Lsl~LeRL~ 178 (814)
T COG1201 106 VRHGDTPQSEKQKMLKNPPHI---LI---TTPESLAILLNSPKFRELLRD-VRYVIVDEIHALAESKRGVQLALSLERLR 178 (814)
T ss_pred eecCCCChHHhhhccCCCCcE---EE---eChhHHHHHhcCHHHHHHhcC-CcEEEeehhhhhhccccchhhhhhHHHHH
Confidence 999999999998988988887 33 3466543332 234444555 899998884 11
Q ss_pred CcccccccCCCCHHHHHHHHHCCCCCChH-HHHhhhhhhhcCCcEEEEccCCC----chhHHhHHHHHHHHHhhhccCCC
Q psy7786 141 PACCSFRLMKLPESLVRALEAKGIKKPTP-IQVQGIPAALSGRDIIGIAFTGS----GKTLVFVLPILMFCLEQETKLPF 215 (252)
Q Consensus 141 ~~~~~~~~~~l~~~l~~~l~~~~~~~p~~-iQ~~~~p~~~~~~~~~~~~~~g~----gKt~~~~~~~l~~i~~~~~~~~~ 215 (252)
.....|+.+|+|+++-..-.-..|..+.. .....-.......++-+..+... |.....++..+..+.++.
T Consensus 179 ~l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~----- 253 (814)
T COG1201 179 ELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKKH----- 253 (814)
T ss_pred hhCcccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhhc-----
Confidence 11125666666666521111000001110 00000011111223444443333 556677777777776654
Q ss_pred CCCCCcEEEEEcCcHHHHHHHHHHHHHHH-hhCCCCC
Q psy7786 216 LPGEGPYGLIICPSRELARQTHDIIQYYC-AALPIGS 251 (252)
Q Consensus 216 ~~~~~~~~LIf~~tr~~a~~i~~~l~~l~-~~~~i~~ 251 (252)
..+|||+|||..|+.++..|+++. ..+.+||
T Consensus 254 -----~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HH 285 (814)
T COG1201 254 -----RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHH 285 (814)
T ss_pred -----CcEEEEEeChHHHHHHHHHHHHhcCCceeeec
Confidence 259999999999999999999887 4444443
No 25
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.94 E-value=7.2e-27 Score=210.33 Aligned_cols=141 Identities=25% Similarity=0.339 Sum_probs=118.2
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.+++|+|++++||||||||+||.+|+++.+.... .++++||++||||||.|+.+.++++.+.+. ++++.
T Consensus 37 i~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~--------~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~-~i~v~ 107 (629)
T PRK11634 37 IPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPEL--------KAPQILVLAPTRELAVQVAEAMTDFSKHMR-GVNVV 107 (629)
T ss_pred HHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhcc--------CCCeEEEEeCcHHHHHHHHHHHHHHHhhcC-CceEE
Confidence 578899999999999999999999999999886533 367899999999999999999999988774 48889
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
.++||.+++.+.+.++++++|+ | +||+++.++..+....+.+ ++++|.||+ +.|.+++|..++...+.
T Consensus 108 ~~~gG~~~~~q~~~l~~~~~IV--V----gTPgrl~d~l~r~~l~l~~-l~~lVlDEA-----d~ml~~gf~~di~~Il~ 175 (629)
T PRK11634 108 ALYGGQRYDVQLRALRQGPQIV--V----GTPGRLLDHLKRGTLDLSK-LSGLVLDEA-----DEMLRMGFIEDVETIMA 175 (629)
T ss_pred EEECCcCHHHHHHHhcCCCCEE--E----ECHHHHHHHHHcCCcchhh-ceEEEeccH-----HHHhhcccHHHHHHHHH
Confidence 9999999988888888887772 3 3488888776665555555 899999997 78889999888877776
Q ss_pred HC
Q psy7786 161 AK 162 (252)
Q Consensus 161 ~~ 162 (252)
..
T Consensus 176 ~l 177 (629)
T PRK11634 176 QI 177 (629)
T ss_pred hC
Confidence 54
No 26
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.94 E-value=8.9e-27 Score=203.53 Aligned_cols=213 Identities=21% Similarity=0.231 Sum_probs=148.1
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.+++|+|++++||||||||++|++|+++.+..... .....+++||++||+|||.|+++.+..+++..+ +++.
T Consensus 32 i~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~----~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~--~~v~ 105 (434)
T PRK11192 32 IPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR----RKSGPPRILILTPTRELAMQVADQARELAKHTH--LDIA 105 (434)
T ss_pred HHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc----cCCCCceEEEECCcHHHHHHHHHHHHHHHccCC--cEEE
Confidence 4678999999999999999999999999999875322 112357899999999999999999999999887 8899
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
.++||.+...+...+..+++|. |. ||+++.++..+....+++ +.++|.||+ +.+.+++|...+.....
T Consensus 106 ~~~gg~~~~~~~~~l~~~~~Il--V~----Tp~rl~~~~~~~~~~~~~-v~~lViDEa-----h~~l~~~~~~~~~~i~~ 173 (434)
T PRK11192 106 TITGGVAYMNHAEVFSENQDIV--VA----TPGRLLQYIKEENFDCRA-VETLILDEA-----DRMLDMGFAQDIETIAA 173 (434)
T ss_pred EEECCCCHHHHHHHhcCCCCEE--EE----ChHHHHHHHHcCCcCccc-CCEEEEECH-----HHHhCCCcHHHHHHHHH
Confidence 9999999888877777777763 33 488887776655555555 889999997 78888999888866655
Q ss_pred HCCCCCChHHHHhhhhhhhcC------------CcEEEE-ccCCCch-----------hHHhHHHHHHHHHhhhccCCCC
Q psy7786 161 AKGIKKPTPIQVQGIPAALSG------------RDIIGI-AFTGSGK-----------TLVFVLPILMFCLEQETKLPFL 216 (252)
Q Consensus 161 ~~~~~~p~~iQ~~~~p~~~~~------------~~~~~~-~~~g~gK-----------t~~~~~~~l~~i~~~~~~~~~~ 216 (252)
.... ..|...+++++.+ ....+. .+..... ........+..+...
T Consensus 174 ~~~~----~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~------- 242 (434)
T PRK11192 174 ETRW----RKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLKQ------- 242 (434)
T ss_pred hCcc----ccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHhc-------
Confidence 4322 1122222222110 111111 1111000 011123344444432
Q ss_pred CCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 217 PGEGPYGLIICPSRELARQTHDIIQYY 243 (252)
Q Consensus 217 ~~~~~~~LIf~~tr~~a~~i~~~l~~l 243 (252)
....++||||+|++.|+.+++.|+..
T Consensus 243 -~~~~~~lVF~~s~~~~~~l~~~L~~~ 268 (434)
T PRK11192 243 -PEVTRSIVFVRTRERVHELAGWLRKA 268 (434)
T ss_pred -CCCCeEEEEeCChHHHHHHHHHHHhC
Confidence 13468999999999999999999763
No 27
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.94 E-value=8.3e-27 Score=207.05 Aligned_cols=147 Identities=24% Similarity=0.378 Sum_probs=119.9
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.+++|+|++++||||||||++|++|+++++...... ......++++||++||||||.|+++.++.+++.++ +++.
T Consensus 152 ip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~-~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~--~~~~ 228 (518)
T PLN00206 152 IPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSG-HPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLP--FKTA 228 (518)
T ss_pred HHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccc-cccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCC--ceEE
Confidence 57889999999999999999999999999988753221 11223578999999999999999999999988876 7888
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
.++||.....+...+.++++|. |. ||+++.++..+....+.+ +.++|.||+ +.+.+.+|.+.+.+.+.
T Consensus 229 ~~~gG~~~~~q~~~l~~~~~Ii--V~----TPgrL~~~l~~~~~~l~~-v~~lViDEa-----d~ml~~gf~~~i~~i~~ 296 (518)
T PLN00206 229 LVVGGDAMPQQLYRIQQGVELI--VG----TPGRLIDLLSKHDIELDN-VSVLVLDEV-----DCMLERGFRDQVMQIFQ 296 (518)
T ss_pred EEECCcchHHHHHHhcCCCCEE--EE----CHHHHHHHHHcCCccchh-eeEEEeecH-----HHHhhcchHHHHHHHHH
Confidence 8999998888888888888773 33 488888877666555555 899999997 78888899888877665
Q ss_pred HC
Q psy7786 161 AK 162 (252)
Q Consensus 161 ~~ 162 (252)
..
T Consensus 297 ~l 298 (518)
T PLN00206 297 AL 298 (518)
T ss_pred hC
Confidence 54
No 28
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=2e-26 Score=203.19 Aligned_cols=147 Identities=20% Similarity=0.223 Sum_probs=114.5
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.+++|+|++++||||||||++|++|+++.+...... .....+.+++|||+||||||.|+++.++.+.+.++ +++.
T Consensus 118 i~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~-~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~--~~v~ 194 (475)
T PRK01297 118 LGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPP-KERYMGEPRALIIAPTRELVVQIAKDAAALTKYTG--LNVM 194 (475)
T ss_pred HHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcc-cccccCCceEEEEeCcHHHHHHHHHHHHHhhccCC--CEEE
Confidence 46789999999999999999999999999998765321 11112357999999999999999999999998887 7888
Q ss_pred eeeCCcccCcchhhhhh-cccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKK-GIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRAL 159 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~-~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l 159 (252)
.++||.+...+.+.+.+ .++|. | ++|+++.++..+....+++ ++++|.||. +.+.+.++...+.+.+
T Consensus 195 ~~~gg~~~~~~~~~~~~~~~~Ii--v----~TP~~Ll~~~~~~~~~l~~-l~~lViDEa-----h~l~~~~~~~~l~~i~ 262 (475)
T PRK01297 195 TFVGGMDFDKQLKQLEARFCDIL--V----ATPGRLLDFNQRGEVHLDM-VEVMVLDEA-----DRMLDMGFIPQVRQII 262 (475)
T ss_pred EEEccCChHHHHHHHhCCCCCEE--E----ECHHHHHHHHHcCCccccc-CceEEechH-----HHHHhcccHHHHHHHH
Confidence 89999888877777654 46662 2 3588887665554444554 899999997 6777778877776666
Q ss_pred HHC
Q psy7786 160 EAK 162 (252)
Q Consensus 160 ~~~ 162 (252)
...
T Consensus 263 ~~~ 265 (475)
T PRK01297 263 RQT 265 (475)
T ss_pred HhC
Confidence 554
No 29
>KOG0337|consensus
Probab=99.93 E-value=2e-26 Score=189.55 Aligned_cols=207 Identities=22% Similarity=0.296 Sum_probs=162.8
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.+++|+|++..|.||||||.||++|+++++..... .+.++++++||||||.|+.++++.+++.++ +++.
T Consensus 52 ipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~-------~g~RalilsptreLa~qtlkvvkdlgrgt~--lr~s 122 (529)
T KOG0337|consen 52 IPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQ-------TGLRALILSPTRELALQTLKVVKDLGRGTK--LRQS 122 (529)
T ss_pred ccceeeccccceeeecCCcchhhHHHHHHHHHhhccc-------cccceeeccCcHHHHHHHHHHHHHhccccc--hhhh
Confidence 7999999999999999999999999999999976543 588999999999999999999999999998 8999
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
+.+||.+.++|...+..++|++ ++| ||++..+.-+....++. ++|+|-||+ +++.+|||-+++.+.+.
T Consensus 123 ~~~ggD~~eeqf~~l~~npDii--~AT----pgr~~h~~vem~l~l~s-veyVVfdEa-----drlfemgfqeql~e~l~ 190 (529)
T KOG0337|consen 123 LLVGGDSIEEQFILLNENPDII--IAT----PGRLLHLGVEMTLTLSS-VEYVVFDEA-----DRLFEMGFQEQLHEILS 190 (529)
T ss_pred hhcccchHHHHHHHhccCCCEE--Eec----Cceeeeeehheeccccc-eeeeeehhh-----hHHHhhhhHHHHHHHHH
Confidence 9999999999999999889884 555 99999888777767777 999999997 89999999999999998
Q ss_pred HCCCCCChHHHHhhhhhhhcC-----------CcEEEEcc--C--------------CCchhHHhHHHHHHHHHhhhccC
Q psy7786 161 AKGIKKPTPIQVQGIPAALSG-----------RDIIGIAF--T--------------GSGKTLVFVLPILMFCLEQETKL 213 (252)
Q Consensus 161 ~~~~~~p~~iQ~~~~p~~~~~-----------~~~~~~~~--~--------------g~gKt~~~~~~~l~~i~~~~~~~ 213 (252)
+. |...|...+++++.. ..+++.-. + ...| .++++..+.....
T Consensus 191 rl----~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K-~aaLl~il~~~~~----- 260 (529)
T KOG0337|consen 191 RL----PESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEK-EAALLSILGGRIK----- 260 (529)
T ss_pred hC----CCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHH-HHHHHHHHhcccc-----
Confidence 84 444465555555431 22333211 1 1112 2333333332211
Q ss_pred CCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 214 PFLPGEGPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 214 ~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
..++++||+|+..++.+...++..+
T Consensus 261 ------~~~t~vf~~tk~hve~~~~ll~~~g 285 (529)
T KOG0337|consen 261 ------DKQTIVFVATKHHVEYVRGLLRDFG 285 (529)
T ss_pred ------ccceeEEecccchHHHHHHHHHhcC
Confidence 3469999999999999988887654
No 30
>KOG0347|consensus
Probab=99.93 E-value=4.9e-26 Score=192.70 Aligned_cols=150 Identities=23% Similarity=0.292 Sum_probs=120.0
Q ss_pred CCcccCC-CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCC---CCCCCcE--EEEEcCcHHHHHHHHHHHHHHHHhCC
Q psy7786 1 MVTYRNS-RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPF---LPGEGPY--GLIICPSRELARQTHDIIQYYCAALP 74 (252)
Q Consensus 1 i~~~~~g-~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~---~~~~~~~--~lil~ptreLa~q~~~~~~~l~~~~~ 74 (252)
||++..| .|++..|.||||||+||-+|++.++......... ....+++ +||++||||||.||.+.+..++.+.+
T Consensus 212 lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~ 291 (731)
T KOG0347|consen 212 LPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQ 291 (731)
T ss_pred ccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccC
Confidence 5788888 7999999999999999999999976643221110 1123455 99999999999999999999999988
Q ss_pred CCcceeeeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhh--hhceeeccCCCCCcccccccCCCC
Q psy7786 75 IPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRR--NLRILVEGDDVPPACCSFRLMKLP 152 (252)
Q Consensus 75 ~~~~~~~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~--~~~~~V~de~~~~~~~~~~~~~l~ 152 (252)
+++..++||.+...|.+.+++.++|+ |+| |||+..++.+...++.+ .++++|.||+ ++|.+-|-=
T Consensus 292 --i~v~si~GGLavqKQqRlL~~~p~IV--VAT----PGRlweli~e~n~~l~~~k~vkcLVlDEa-----DRmvekghF 358 (731)
T KOG0347|consen 292 --IRVASITGGLAVQKQQRLLNQRPDIV--VAT----PGRLWELIEEDNTHLGNFKKVKCLVLDEA-----DRMVEKGHF 358 (731)
T ss_pred --eEEEEeechhHHHHHHHHHhcCCCEE--Eec----chHHHHHHHhhhhhhhhhhhceEEEEccH-----HHHhhhccH
Confidence 99999999999999999999988884 565 89988888887765543 4889999998 788877766
Q ss_pred HHHHHHHHHCC
Q psy7786 153 ESLVRALEAKG 163 (252)
Q Consensus 153 ~~l~~~l~~~~ 163 (252)
+++...|...+
T Consensus 359 ~Els~lL~~L~ 369 (731)
T KOG0347|consen 359 EELSKLLKHLN 369 (731)
T ss_pred HHHHHHHHHhh
Confidence 66655555554
No 31
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.92 E-value=4.4e-25 Score=202.30 Aligned_cols=130 Identities=18% Similarity=0.239 Sum_probs=98.7
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.+++|+|++++||||||||+||.+|+++.+..+ .++++|||+||||||+|+.+.+++++ ..+ +++.
T Consensus 45 i~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~---------~~~~aL~l~PtraLa~q~~~~l~~l~-~~~--i~v~ 112 (742)
T TIGR03817 45 AELAHAGRHVVVATGTASGKSLAYQLPVLSALADD---------PRATALYLAPTKALAADQLRAVRELT-LRG--VRPA 112 (742)
T ss_pred HHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC---------CCcEEEEEcChHHHHHHHHHHHHHhc-cCC--eEEE
Confidence 57889999999999999999999999999998753 26789999999999999999999997 334 7888
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCC---ChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSL---PDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESL 155 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~---~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l 155 (252)
.+.|+++. ++.+.++++++| +. ++|+++... ....|..+.++++++|.||+ +.+.+ .|...+
T Consensus 113 ~~~Gdt~~-~~r~~i~~~~~I---iv---tTPd~L~~~~L~~~~~~~~~l~~l~~vViDEa-----h~~~g-~fg~~~ 177 (742)
T TIGR03817 113 TYDGDTPT-EERRWAREHARY---VL---TNPDMLHRGILPSHARWARFLRRLRYVVIDEC-----HSYRG-VFGSHV 177 (742)
T ss_pred EEeCCCCH-HHHHHHhcCCCE---EE---EChHHHHHhhccchhHHHHHHhcCCEEEEeCh-----hhccC-ccHHHH
Confidence 88888764 444566667776 22 458887521 12234444456999999997 66655 355554
No 32
>KOG0350|consensus
Probab=99.92 E-value=1.4e-25 Score=188.06 Aligned_cols=123 Identities=24% Similarity=0.319 Sum_probs=102.3
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCL 81 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~ 81 (252)
|....++|+++.||||||||+||++|++|.+..... +..||+||+|||+|+.||++++++++.+.| +.++.
T Consensus 178 p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v-------~~LRavVivPtr~L~~QV~~~f~~~~~~tg--L~V~~ 248 (620)
T KOG0350|consen 178 PPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPV-------KRLRAVVIVPTRELALQVYDTFKRLNSGTG--LAVCS 248 (620)
T ss_pred CCCCCCCceEEecCCCCCceeeehhHHHHHHccCCc-------cceEEEEEeeHHHHHHHHHHHHHHhccCCc--eEEEe
Confidence 556679999999999999999999999999876543 478999999999999999999999999988 78999
Q ss_pred eeCCcccCcchhhhhhc-c--cccCCccccccCCccccCCChh-HHHHHhhhhceeeccCC
Q psy7786 82 AIGGVPMNQSLDVIKKG-I--QYNDPIKTSWRAPRCILSLPDQ-VHDIIRRNLRILVEGDD 138 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~~~-~--~i~~~i~t~~~~p~~l~~~~~~-~~~~l~~~~~~~V~de~ 138 (252)
+.|..+.+....+|... + .++..| +|||||+++... ....+++ ++|+|.||+
T Consensus 249 ~sgq~sl~~E~~qL~~~~~~~~~DIlV----aTPGRLVDHl~~~k~f~Lk~-LrfLVIDEA 304 (620)
T KOG0350|consen 249 LSGQNSLEDEARQLASDPPECRIDILV----ATPGRLVDHLNNTKSFDLKH-LRFLVIDEA 304 (620)
T ss_pred cccccchHHHHHHHhcCCCccccceEE----cCchHHHHhccCCCCcchhh-ceEEEechH
Confidence 99999998887777653 2 222113 459999999985 4555665 999999997
No 33
>KOG0341|consensus
Probab=99.90 E-value=9.3e-24 Score=172.51 Aligned_cols=158 Identities=65% Similarity=1.126 Sum_probs=150.6
Q ss_pred cchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChH
Q psy7786 90 QSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTP 169 (252)
Q Consensus 90 ~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~ 169 (252)
...+.+.+|..+..+|.|.|.||.-+..+..+..+..++.++++|+++++|.|+.+|.+|-|+..+++.+++.|+..||+
T Consensus 116 msV~ElakGi~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTp 195 (610)
T KOG0341|consen 116 MSVAELAKGITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTP 195 (610)
T ss_pred eeHHHHhCCCcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCc
Confidence 34677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHhhC
Q psy7786 170 IQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247 (252)
Q Consensus 170 iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~~~ 247 (252)
+|.+.+|..++|+|++.++.||||||+.|.+|++...++++.+.++....+|..||.||+|++|.|.++.+..+...+
T Consensus 196 IQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L 273 (610)
T KOG0341|consen 196 IQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAAL 273 (610)
T ss_pred eeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988777654
No 34
>KOG0327|consensus
Probab=99.90 E-value=5.3e-24 Score=173.63 Aligned_cols=209 Identities=18% Similarity=0.275 Sum_probs=155.8
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
|+++..|+|+.+++++|||||.||++++++.+..+.+ ..+|++++||||||.|+.++.+.++..++ +++.
T Consensus 57 I~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~k--------e~qalilaPtreLa~qi~~v~~~lg~~~~--~~v~ 126 (397)
T KOG0327|consen 57 ILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVK--------ETQALILAPTRELAQQIQKVVRALGDHMD--VSVH 126 (397)
T ss_pred ccccccCCceeEeeeccccchhhhHHHHHhhcCcchH--------HHHHHHhcchHHHHHHHHHHHHhhhcccc--eeee
Confidence 6789999999999999999999999999999866543 67899999999999999999999999988 8899
Q ss_pred eeeCCcccCcchhhhhh-cccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKK-GIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRAL 159 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~-~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l 159 (252)
.+.||.+...+-+.+.. ++++. + ++||++.++.++. ....+.++++|.||+ +.|...||.+.+...+
T Consensus 127 ~~igg~~~~~~~~~i~~~~~hiv--v----GTpgrV~dml~~~-~l~~~~iKmfvlDEa-----DEmLs~gfkdqI~~if 194 (397)
T KOG0327|consen 127 ACIGGTNVRREDQALLKDKPHIV--V----GTPGRVFDMLNRG-SLSTDGIKMFVLDEA-----DEMLSRGFKDQIYDIF 194 (397)
T ss_pred eecCcccchhhhhhhhccCceee--c----CCchhHHHhhccc-cccccceeEEeecch-----HhhhccchHHHHHHHH
Confidence 99999988755555544 46662 2 5599999999888 444445999999997 7899999999998887
Q ss_pred HHCCCCCChHHHHhhhhhhhcC----------CcEEEEccCCCchhHHhH------------HHHHHHHHhhhccCCCCC
Q psy7786 160 EAKGIKKPTPIQVQGIPAALSG----------RDIIGIAFTGSGKTLVFV------------LPILMFCLEQETKLPFLP 217 (252)
Q Consensus 160 ~~~~~~~p~~iQ~~~~p~~~~~----------~~~~~~~~~g~gKt~~~~------------~~~l~~i~~~~~~~~~~~ 217 (252)
.. .|..+|...++++... ++.........++|..+. ++.+..+.+ +
T Consensus 195 ~~----lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~-~------- 262 (397)
T KOG0327|consen 195 QE----LPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYR-R------- 262 (397)
T ss_pred HH----cCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHH-h-------
Confidence 77 4566666655555421 222222222223333221 233333333 1
Q ss_pred CCCcEEEEEcCcHHHHHHHHHHHHHHHh
Q psy7786 218 GEGPYGLIICPSRELARQTHDIIQYYCA 245 (252)
Q Consensus 218 ~~~~~~LIf~~tr~~a~~i~~~l~~l~~ 245 (252)
-.+++||||||+-+.++...|.+.+.
T Consensus 263 --~~q~~if~nt~r~v~~l~~~L~~~~~ 288 (397)
T KOG0327|consen 263 --VTQAVIFCNTRRKVDNLTDKLRAHGF 288 (397)
T ss_pred --hhcceEEecchhhHHHHHHHHhhCCc
Confidence 34799999999999999999965543
No 35
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.89 E-value=6.5e-23 Score=191.43 Aligned_cols=129 Identities=17% Similarity=0.237 Sum_probs=95.5
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHH-------HHHhC
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY-------YCAAL 73 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~-------l~~~~ 73 (252)
||.+++|+|++++||||||||+||.+|+++.+...... ....+++++||++||||||+|+++.+.. +++..
T Consensus 41 i~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~--~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~ 118 (876)
T PRK13767 41 IPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGRE--GELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKER 118 (876)
T ss_pred HHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccc--cCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999998764321 1113478999999999999999886653 23222
Q ss_pred CC---CcceeeeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHH--HHHhhhhceeeccCC
Q psy7786 74 PI---PLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVH--DIIRRNLRILVEGDD 138 (252)
Q Consensus 74 ~~---~~~~~~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~--~~l~~~~~~~V~de~ 138 (252)
|. ++++..++|+++..++.+.++++++| +. +||+++..+..... ..++ +++++|.||.
T Consensus 119 g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~I---lV---tTPE~L~~ll~~~~~~~~l~-~l~~VVIDE~ 181 (876)
T PRK13767 119 GEELPEIRVAIRTGDTSSYEKQKMLKKPPHI---LI---TTPESLAILLNSPKFREKLR-TVKWVIVDEI 181 (876)
T ss_pred CCCcCCeeEEEEcCCCCHHHHHHHHhCCCCE---EE---ecHHHHHHHhcChhHHHHHh-cCCEEEEech
Confidence 21 47888999999888887777877777 22 35887755543322 2344 4899999996
No 36
>PTZ00424 helicase 45; Provisional
Probab=99.88 E-value=8.5e-23 Score=176.87 Aligned_cols=139 Identities=21% Similarity=0.352 Sum_probs=106.3
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
|+.+++|+|++++||||||||++|++|+++.+.... .+.++||++||||||.|+.+.++.++...+ +.+.
T Consensus 59 i~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~--------~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~--~~~~ 128 (401)
T PTZ00424 59 IKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDL--------NACQALILAPTRELAQQIQKVVLALGDYLK--VRCH 128 (401)
T ss_pred HHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCC--------CCceEEEECCCHHHHHHHHHHHHHHhhhcC--ceEE
Confidence 467899999999999999999999999998774322 367899999999999999999999988766 7788
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
.++|+....++...+.++++|. |. +|+++.++..+.+..+.+ +.++|.||+ +.+.+.++...+.+.+.
T Consensus 129 ~~~g~~~~~~~~~~~~~~~~Iv--v~----Tp~~l~~~l~~~~~~l~~-i~lvViDEa-----h~~~~~~~~~~~~~i~~ 196 (401)
T PTZ00424 129 ACVGGTVVRDDINKLKAGVHMV--VG----TPGRVYDMIDKRHLRVDD-LKLFILDEA-----DEMLSRGFKGQIYDVFK 196 (401)
T ss_pred EEECCcCHHHHHHHHcCCCCEE--EE----CcHHHHHHHHhCCccccc-ccEEEEecH-----HHHHhcchHHHHHHHHh
Confidence 8899988777777777766662 33 377776665554444554 899999996 55555555555555554
Q ss_pred H
Q psy7786 161 A 161 (252)
Q Consensus 161 ~ 161 (252)
.
T Consensus 197 ~ 197 (401)
T PTZ00424 197 K 197 (401)
T ss_pred h
Confidence 4
No 37
>KOG0332|consensus
Probab=99.88 E-value=5.5e-23 Score=167.05 Aligned_cols=206 Identities=19% Similarity=0.255 Sum_probs=139.5
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCc
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGV 86 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~ 86 (252)
.+|+|++|++|||||.||+|.++.++.... ..|++++|+||||||.|+.+++.+++++.+ +++.....|.
T Consensus 129 p~nlIaQsqsGtGKTaaFvL~MLsrvd~~~--------~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~--ita~yair~s 198 (477)
T KOG0332|consen 129 PQNLIAQSQSGTGKTAAFVLTMLSRVDPDV--------VVPQCICLAPTRELAPQTGEVVEEMGKFTE--LTASYAIRGS 198 (477)
T ss_pred chhhhhhhcCCCchhHHHHHHHHHhcCccc--------cCCCceeeCchHHHHHHHHHHHHHhcCcee--eeEEEEecCc
Confidence 368999999999999999999999997766 378999999999999999999999999987 7777766664
Q ss_pred ccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCccccc--------------------
Q psy7786 87 PMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSF-------------------- 146 (252)
Q Consensus 87 ~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~-------------------- 146 (252)
...+|..+..+|+. ++||.+.++..+.....-+.++++|.||+ +.|
T Consensus 199 -------k~~rG~~i~eqIvi--GTPGtv~Dlm~klk~id~~kikvfVlDEA-----D~Mi~tqG~~D~S~rI~~~lP~~ 264 (477)
T KOG0332|consen 199 -------KAKRGNKLTEQIVI--GTPGTVLDLMLKLKCIDLEKIKVFVLDEA-----DVMIDTQGFQDQSIRIMRSLPRN 264 (477)
T ss_pred -------ccccCCcchhheee--CCCccHHHHHHHHHhhChhhceEEEecch-----hhhhhcccccccchhhhhhcCCc
Confidence 22334333333443 56999999999977777777999999997 222
Q ss_pred -ccCCCCHHHHHH---HHHCCCCCChHHHHhhhhhhhcC-CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCc
Q psy7786 147 -RLMKLPESLVRA---LEAKGIKKPTPIQVQGIPAALSG-RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGP 221 (252)
Q Consensus 147 -~~~~l~~~l~~~---l~~~~~~~p~~iQ~~~~p~~~~~-~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~ 221 (252)
+-+.||++..+. +......+|..+-...-...+.+ +...+.......| +..+..++.-. .-.
T Consensus 265 ~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K-----~~~l~~lyg~~--------tig 331 (477)
T KOG0332|consen 265 QQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDK-----YQALVNLYGLL--------TIG 331 (477)
T ss_pred ceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhH-----HHHHHHHHhhh--------hhh
Confidence 222333333222 22222333332222111122222 3444444445555 44444443321 135
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHHhhCCC
Q psy7786 222 YGLIICPSRELARQTHDIIQYYCAALPI 249 (252)
Q Consensus 222 ~~LIf~~tr~~a~~i~~~l~~l~~~~~i 249 (252)
+++|||.||..|.+++..+++-|+.+.+
T Consensus 332 qsiIFc~tk~ta~~l~~~m~~~Gh~V~~ 359 (477)
T KOG0332|consen 332 QSIIFCHTKATAMWLYEEMRAEGHQVSL 359 (477)
T ss_pred heEEEEeehhhHHHHHHHHHhcCceeEE
Confidence 7999999999999999999998887653
No 38
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.87 E-value=9.5e-22 Score=187.81 Aligned_cols=120 Identities=18% Similarity=0.201 Sum_probs=89.0
Q ss_pred EEcCCCchHHHHhHHHHHHHHHHhhcCC--CCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHh----------CCCCcce
Q psy7786 12 GIAFTGSGKTLVFVLPILMFCLEQETKL--PFLPGEGPYGLIICPSRELARQTHDIIQYYCAA----------LPIPLRT 79 (252)
Q Consensus 12 ~~a~tgsGKT~a~~lp~~~~~~~~~~~~--~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~----------~~~~~~~ 79 (252)
++||||||||+||.||++++++.+.... ......++++|||+|||||++|+++.++..... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 4799999999999999999998653110 011124689999999999999999998753221 1124899
Q ss_pred eeeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHH-HHHhhhhceeeccCC
Q psy7786 80 CLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVH-DIIRRNLRILVEGDD 138 (252)
Q Consensus 80 ~~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~-~~l~~~~~~~V~de~ 138 (252)
..++|+++.+++.+.+++++|| +. +||+++..+..+.. ..+++ ++++|.||.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdI---LV---TTPEsL~~LLtsk~r~~L~~-Vr~VIVDE~ 133 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDI---LI---TTPESLYLMLTSRARETLRG-VETVIIDEV 133 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCE---EE---ecHHHHHHHHhhhhhhhhcc-CCEEEEecH
Confidence 9999999998888888888887 33 35888876654433 34444 999999995
No 39
>KOG4284|consensus
Probab=99.87 E-value=2.3e-23 Score=179.55 Aligned_cols=208 Identities=19% Similarity=0.206 Sum_probs=155.2
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.++.|.|+|++|++|||||+.|.+-+++.+.... ..++++|++||||+|.||.+.+.+++..+. +.+|.
T Consensus 56 IP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~--------~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~-g~~cs 126 (980)
T KOG4284|consen 56 IPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRS--------SHIQKVIVTPTREIAVQIKETVRKVAPSFT-GARCS 126 (980)
T ss_pred hhhhhcccceEEEecCCCCceEEEEeeeehhcCccc--------CcceeEEEecchhhhhHHHHHHHHhccccc-CcceE
Confidence 799999999999999999999999999998886654 488999999999999999999999988654 49999
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCccccccc-CCCCHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRL-MKLPESLVRAL 159 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~-~~l~~~l~~~l 159 (252)
+++||++....+..+++.. |. | ++||||.-+.+-+..+... ++++|+||+ +.+.+ -.|-.++-.++
T Consensus 127 vfIGGT~~~~d~~rlk~~r-Iv--I----GtPGRi~qL~el~~~n~s~-vrlfVLDEA-----DkL~~t~sfq~~In~ii 193 (980)
T KOG4284|consen 127 VFIGGTAHKLDLIRLKQTR-IV--I----GTPGRIAQLVELGAMNMSH-VRLFVLDEA-----DKLMDTESFQDDINIII 193 (980)
T ss_pred EEecCchhhhhhhhhhhce-EE--e----cCchHHHHHHHhcCCCccc-eeEEEeccH-----HhhhchhhHHHHHHHHH
Confidence 9999999988888877643 31 3 4599999888888878777 999999997 55444 44666665555
Q ss_pred HHCCCCCChHHHHhhhhhhhcC--------------------Cc----------EEEEccCCCchhHHhHHHHHHHHHhh
Q psy7786 160 EAKGIKKPTPIQVQGIPAALSG--------------------RD----------IIGIAFTGSGKTLVFVLPILMFCLEQ 209 (252)
Q Consensus 160 ~~~~~~~p~~iQ~~~~p~~~~~--------------------~~----------~~~~~~~g~gKt~~~~~~~l~~i~~~ 209 (252)
.. .|..-|..+.+++-+. .| ..++.+.-+-+.....+..|.+++..
T Consensus 194 ~s----lP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ 269 (980)
T KOG4284|consen 194 NS----LPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKS 269 (980)
T ss_pred Hh----cchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhh
Confidence 44 3555555444433211 11 11122223444445556667666654
Q ss_pred hccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 210 ETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 242 (252)
Q Consensus 210 ~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~ 242 (252)
- ...|+||||+....|+-++..|..
T Consensus 270 i--------py~QAlVF~~~~sra~~~a~~L~s 294 (980)
T KOG4284|consen 270 I--------PYVQALVFCDQISRAEPIATHLKS 294 (980)
T ss_pred C--------chHHHHhhhhhhhhhhHHHHHhhc
Confidence 3 245799999999999999998864
No 40
>KOG0329|consensus
Probab=99.86 E-value=5e-23 Score=159.80 Aligned_cols=208 Identities=20% Similarity=0.194 Sum_probs=148.0
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||...-|.|++++|++|.|||..|++..+|.+-+.. +.+.+|++|.|||||.|+.++..+|++|++ ++++.
T Consensus 73 ipqailgmdvlcqaksgmgktavfvl~tlqqiepv~--------g~vsvlvmchtrelafqi~~ey~rfskymP-~vkva 143 (387)
T KOG0329|consen 73 IPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVD--------GQVSVLVMCHTRELAFQISKEYERFSKYMP-SVKVS 143 (387)
T ss_pred hhHHhhcchhheecccCCCceeeeehhhhhhcCCCC--------CeEEEEEEeccHHHHHHHHHHHHHHHhhCC-CceEE
Confidence 678888999999999999999999999999885543 478899999999999999999999999998 69999
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccc-cCCCCHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFR-LMKLPESLVRAL 159 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~-~~~l~~~l~~~l 159 (252)
+++||.+.++..+.+++.++|. + ++|||++++.......+++ ++.+|+||. +.|. ++....++++.+
T Consensus 144 VFfGG~~Ikkdee~lk~~Phiv--V----gTPGrilALvr~k~l~lk~-vkhFvlDEc-----dkmle~lDMrRDvQEif 211 (387)
T KOG0329|consen 144 VFFGGLFIKKDEELLKNCPHIV--V----GTPGRILALVRNRSLNLKN-VKHFVLDEC-----DKMLEQLDMRRDVQEIF 211 (387)
T ss_pred EEEcceeccccHHHHhCCCeEE--E----cCcHHHHHHHHhccCchhh-cceeehhhH-----HHHHHHHHHHHHHHHHh
Confidence 9999999999999999988873 3 4599999999999999998 888888885 4333 344555555444
Q ss_pred HHCCCCCChHHHHhhhhhhhcCC----------cEEEEccCCC-chhHHhHHHHHHHHHhhhccCCC----CCCCCcEEE
Q psy7786 160 EAKGIKKPTPIQVQGIPAALSGR----------DIIGIAFTGS-GKTLVFVLPILMFCLEQETKLPF----LPGEGPYGL 224 (252)
Q Consensus 160 ~~~~~~~p~~iQ~~~~p~~~~~~----------~~~~~~~~g~-gKt~~~~~~~l~~i~~~~~~~~~----~~~~~~~~L 224 (252)
.. .|..-|..+++++++.. |-+-+..... .-|+.-+.....++.++++..+. ......|++
T Consensus 212 r~----tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVv 287 (387)
T KOG0329|consen 212 RM----TPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVV 287 (387)
T ss_pred hc----CcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhccee
Confidence 32 45555555556555431 1111111111 22333333333344444333222 122346899
Q ss_pred EEcCcHHHH
Q psy7786 225 IICPSRELA 233 (252)
Q Consensus 225 If~~tr~~a 233 (252)
||+.+....
T Consensus 288 IFvKsv~Rl 296 (387)
T KOG0329|consen 288 IFVKSVQRL 296 (387)
T ss_pred Eeeehhhhh
Confidence 999886653
No 41
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.86 E-value=7e-21 Score=175.80 Aligned_cols=121 Identities=25% Similarity=0.335 Sum_probs=102.1
Q ss_pred cccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeee
Q psy7786 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLA 82 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~ 82 (252)
.+.+|||++++++||||||++|.+|+++.++.+.. -+||+|+||++||+++.+.++++...++.++++...
T Consensus 81 ~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~---------a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y 151 (851)
T COG1205 81 LIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPS---------ARALLLYPTNALANDQAERLRELISDLPGKVTFGRY 151 (851)
T ss_pred HHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcC---------ccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeee
Confidence 46799999999999999999999999999998764 289999999999999999999999998867888899
Q ss_pred eCCcccCcchhhhhhcccccCCccccccCCccccC---CChhHHHHHhhhhceeeccCC
Q psy7786 83 IGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILS---LPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 83 ~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~---~~~~~~~~l~~~~~~~V~de~ 138 (252)
+|++..+++.+..+++++| +.| .|.+|-- .....|..+.++++++|.||.
T Consensus 152 ~Gdt~~~~r~~~~~~pp~I---llT---NpdMLh~~llr~~~~~~~~~~~Lk~lVvDEl 204 (851)
T COG1205 152 TGDTPPEERRAIIRNPPDI---LLT---NPDMLHYLLLRNHDAWLWLLRNLKYLVVDEL 204 (851)
T ss_pred cCCCChHHHHHHHhCCCCE---EEe---CHHHHHHHhccCcchHHHHHhcCcEEEEecc
Confidence 9998888887888888898 554 4666544 333456666666999999995
No 42
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.85 E-value=2.6e-21 Score=175.84 Aligned_cols=212 Identities=16% Similarity=0.108 Sum_probs=132.3
Q ss_pred CCcccCCC-cEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEE-EcCcHHHHHHHHHHHHHHHHhCC----
Q psy7786 1 MVTYRNSR-DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLI-ICPSRELARQTHDIIQYYCAALP---- 74 (252)
Q Consensus 1 i~~~~~g~-d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~li-l~ptreLa~q~~~~~~~l~~~~~---- 74 (252)
||.+++|+ +++++||||||||.+|.++.+.. ... ...+++|| ++||||||.|+++.++++++.++
T Consensus 24 i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~--------~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~ 94 (844)
T TIGR02621 24 AERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG--------AKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPE 94 (844)
T ss_pred HHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc--------ccccceEEEeCchHHHHHHHHHHHHHHHHHhcccch
Confidence 46788998 68888999999999776665522 111 13567777 55999999999999999998762
Q ss_pred -----------------CCcceeeeeCCcccCcchhhhhhcccccCCccccccCCccccCCC--------hhH---HHHH
Q psy7786 75 -----------------IPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLP--------DQV---HDII 126 (252)
Q Consensus 75 -----------------~~~~~~~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~--------~~~---~~~l 126 (252)
.++++..++||.+.+.+.+.+.++++|+ |+| ++.+.+-. ... ..-+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~II--VgT----~D~i~sr~L~~gYg~~~~~~pi~ag~ 168 (844)
T TIGR02621 95 VEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVI--VGT----VDMIGSRLLFSGYGCGFKSRPLHAGF 168 (844)
T ss_pred hhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEE--EEC----HHHHcCCccccccccccccccchhhh
Confidence 1388999999999999999999888874 444 43222111 000 0002
Q ss_pred hhhhceeeccCCCCCcccccccCCCCHHHHHHHHHCC-CCCChHHHHhhhhhhhcC-----------CcEEE--------
Q psy7786 127 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKG-IKKPTPIQVQGIPAALSG-----------RDIIG-------- 186 (252)
Q Consensus 127 ~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~p~~iQ~~~~p~~~~~-----------~~~~~-------- 186 (252)
.++++++|.||+ + .+++|.+++...+.... .....+.|...+++++.. .+...
T Consensus 169 L~~v~~LVLDEA-----D--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~ 241 (844)
T TIGR02621 169 LGQDALIVHDEA-----H--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLA 241 (844)
T ss_pred hccceEEEEehh-----h--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccccccc
Confidence 344899999997 4 67889998877777531 110111344444444321 11100
Q ss_pred ------EccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 187 ------IAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243 (252)
Q Consensus 187 ------~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l 243 (252)
.......+....++..+..+.. ..+.++||||||++.|+.+++.|++.
T Consensus 242 a~ki~q~v~v~~e~Kl~~lv~~L~~ll~---------e~g~~vLVF~NTv~~Aq~L~~~L~~~ 295 (844)
T TIGR02621 242 AKKIVKLVPPSDEKFLSTMVKELNLLMK---------DSGGAILVFCRTVKHVRKVFAKLPKE 295 (844)
T ss_pred ccceEEEEecChHHHHHHHHHHHHHHHh---------hCCCcEEEEECCHHHHHHHHHHHHhc
Confidence 0000011111122222222211 23567999999999999999999764
No 43
>PRK09401 reverse gyrase; Reviewed
Probab=99.82 E-value=8.2e-20 Score=173.53 Aligned_cols=132 Identities=17% Similarity=0.221 Sum_probs=92.4
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.+++|+|++++|||||||| +|.+|+...+.. .+.+++||+||||||.|+++.++.++...+ +.+.
T Consensus 89 i~~il~g~dv~i~ApTGsGKT-~f~l~~~~~l~~----------~g~~alIL~PTreLa~Qi~~~l~~l~~~~~--~~~~ 155 (1176)
T PRK09401 89 AKRLLLGESFAIIAPTGVGKT-TFGLVMSLYLAK----------KGKKSYIIFPTRLLVEQVVEKLEKFGEKVG--CGVK 155 (1176)
T ss_pred HHHHHCCCcEEEEcCCCCCHH-HHHHHHHHHHHh----------cCCeEEEEeccHHHHHHHHHHHHHHhhhcC--ceEE
Confidence 467899999999999999999 577777665532 267899999999999999999999999877 6777
Q ss_pred eeeCCccc-Cc----chhhhhh-cccccCCccccccCCccccCCChhHHHHHh-hhhceeeccCCCCCccccccc-----
Q psy7786 81 LAIGGVPM-NQ----SLDVIKK-GIQYNDPIKTSWRAPRCILSLPDQVHDIIR-RNLRILVEGDDVPPACCSFRL----- 148 (252)
Q Consensus 81 ~~~g~~~~-~~----~~~~l~~-~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~-~~~~~~V~de~~~~~~~~~~~----- 148 (252)
.++|+.+. .. +.+.+.+ .++|. | +||+++..+.. .+. ..+.++|.||+ ++|.+
T Consensus 156 ~~~g~~~~~~~ek~~~~~~l~~~~~~Il--V----~Tp~rL~~~~~----~l~~~~~~~lVvDEa-----D~~L~~~k~i 220 (1176)
T PRK09401 156 ILYYHSSLKKKEKEEFLERLKEGDFDIL--V----TTSQFLSKNFD----ELPKKKFDFVFVDDV-----DAVLKSSKNI 220 (1176)
T ss_pred EEEccCCcchhHHHHHHHHHhcCCCCEE--E----ECHHHHHHHHH----hccccccCEEEEECh-----HHhhhcccch
Confidence 77777553 12 2233333 35552 2 34777765433 222 23889999986 55553
Q ss_pred ------CCCCH-HHHHHHH
Q psy7786 149 ------MKLPE-SLVRALE 160 (252)
Q Consensus 149 ------~~l~~-~l~~~l~ 160 (252)
+||+. ++...+.
T Consensus 221 d~~l~~lGF~~~~i~~i~~ 239 (1176)
T PRK09401 221 DKLLYLLGFSEEDIEKAME 239 (1176)
T ss_pred hhHHHhCCCCHHHHHHHHH
Confidence 78974 4544443
No 44
>PRK02362 ski2-like helicase; Provisional
Probab=99.80 E-value=1.7e-19 Score=166.79 Aligned_cols=128 Identities=18% Similarity=0.202 Sum_probs=90.1
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeee
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAI 83 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~ 83 (252)
+++|+|++++||||||||++|.+|+++.+.. +.+++|++||||||.|+++.+++++. .| +++..++
T Consensus 36 ~~~g~nvlv~APTGSGKTlia~lail~~l~~-----------~~kal~i~P~raLa~q~~~~~~~~~~-~g--~~v~~~t 101 (737)
T PRK02362 36 LLDGKNLLAAIPTASGKTLIAELAMLKAIAR-----------GGKALYIVPLRALASEKFEEFERFEE-LG--VRVGIST 101 (737)
T ss_pred HhCCCcEEEECCCcchHHHHHHHHHHHHHhc-----------CCcEEEEeChHHHHHHHHHHHHHhhc-CC--CEEEEEe
Confidence 6789999999999999999999999998842 45799999999999999999998764 35 8888899
Q ss_pred CCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 84 GGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 84 g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
|+.+...+ .+. ..+|. |. ||+++..+.......+. .+.++|.||. +.+.+..+.+.+...+.
T Consensus 102 Gd~~~~~~--~l~-~~~Ii--V~----Tpek~~~llr~~~~~l~-~v~lvViDE~-----H~l~d~~rg~~le~il~ 163 (737)
T PRK02362 102 GDYDSRDE--WLG-DNDII--VA----TSEKVDSLLRNGAPWLD-DITCVVVDEV-----HLIDSANRGPTLEVTLA 163 (737)
T ss_pred CCcCcccc--ccC-CCCEE--EE----CHHHHHHHHhcChhhhh-hcCEEEEECc-----cccCCCcchHHHHHHHH
Confidence 98654332 222 23441 22 36665544433223333 4899999996 45555555555533333
No 45
>PRK14701 reverse gyrase; Provisional
Probab=99.80 E-value=1.6e-19 Score=175.19 Aligned_cols=132 Identities=16% Similarity=0.218 Sum_probs=98.8
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.+++|+|++++||||||||+.+.++.+... . .+.++||++|||||+.|+.+.++.+++.++.++++.
T Consensus 88 i~~il~G~d~li~APTGsGKTl~~~~~al~~~-~----------~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~ 156 (1638)
T PRK14701 88 AKRILRGKSFSIVAPTGMGKSTFGAFIALFLA-L----------KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLV 156 (1638)
T ss_pred HHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH-h----------cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEE
Confidence 47889999999999999999995555544321 1 266899999999999999999999999887668888
Q ss_pred eeeCCcccCcchh---hhhhc-ccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCccccccc--------
Q psy7786 81 LAIGGVPMNQSLD---VIKKG-IQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRL-------- 148 (252)
Q Consensus 81 ~~~g~~~~~~~~~---~l~~~-~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~-------- 148 (252)
.++|+.+..++.+ .+.++ ++|. + +||+++....... ....+.++|.||+ +.|.+
T Consensus 157 ~~~g~~s~~e~~~~~~~l~~g~~dIL--V----~TPgrL~~~~~~l---~~~~i~~iVVDEA-----D~ml~~~knid~~ 222 (1638)
T PRK14701 157 YYHSNLRKKEKEEFLERIENGDFDIL--V----TTAQFLARNFPEM---KHLKFDFIFVDDV-----DAFLKASKNIDRS 222 (1638)
T ss_pred EEeCCCCHHHHHHHHHHHhcCCCCEE--E----ECCchhHHhHHHH---hhCCCCEEEEECc-----eeccccccccchh
Confidence 8999988776643 34444 6662 2 3588887654432 2255889999986 44432
Q ss_pred ---CCCCHHHHH
Q psy7786 149 ---MKLPESLVR 157 (252)
Q Consensus 149 ---~~l~~~l~~ 157 (252)
+||.+++.+
T Consensus 223 L~llGF~~e~~~ 234 (1638)
T PRK14701 223 LQLLGFYEEIIE 234 (1638)
T ss_pred hhcCCChHHHHH
Confidence 799999865
No 46
>KOG0344|consensus
Probab=99.80 E-value=1.8e-19 Score=154.35 Aligned_cols=215 Identities=22% Similarity=0.181 Sum_probs=130.0
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH--HhCCCCcc
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC--AALPIPLR 78 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~--~~~~~~~~ 78 (252)
||.+++++|+++|||||||||+||.+|+++++..... .....+.+++|+.||||||.|++.++.++. +.++ .+
T Consensus 167 ipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~---~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~--~~ 241 (593)
T KOG0344|consen 167 IPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ---EKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTS--LR 241 (593)
T ss_pred hhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc---ccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCc--hh
Confidence 6889999999999999999999999999999876552 122358999999999999999999999998 5555 66
Q ss_pred eeeeeCCcccCcchhhh-hhcccccCCccccccCCccccCCChhHH--HHHhhhhceeeccCCCCCcccccccC-CCCHH
Q psy7786 79 TCLAIGGVPMNQSLDVI-KKGIQYNDPIKTSWRAPRCILSLPDQVH--DIIRRNLRILVEGDDVPPACCSFRLM-KLPES 154 (252)
Q Consensus 79 ~~~~~g~~~~~~~~~~l-~~~~~i~~~i~t~~~~p~~l~~~~~~~~--~~l~~~~~~~V~de~~~~~~~~~~~~-~l~~~ 154 (252)
+..+....-..+..+.+ ....|+. + ++|-+|....+... ..+++ ++.+|.||+ +...+- .|-.+
T Consensus 242 a~~~~~~~~~~qk~a~~~~~k~dil--i----~TP~ri~~~~~~~~~~idl~~-V~~lV~dEa-----D~lfe~~~f~~Q 309 (593)
T KOG0344|consen 242 AAQFSKPAYPSQKPAFLSDEKYDIL--I----STPMRIVGLLGLGKLNIDLSK-VEWLVVDEA-----DLLFEPEFFVEQ 309 (593)
T ss_pred hhhcccccchhhccchhHHHHHHHH--h----cCHHHHHHHhcCCCccchhhe-eeeEeechH-----HhhhChhhHHHH
Confidence 66555443333222222 2223331 2 33666655555433 45555 888888885 332222 33333
Q ss_pred HHHHHHHCC----------CCCChHHHHhhhhhhhcCCcEEEEcc-----------CCCchhHHhHHHHHHHHHhhhccC
Q psy7786 155 LVRALEAKG----------IKKPTPIQVQGIPAALSGRDIIGIAF-----------TGSGKTLVFVLPILMFCLEQETKL 213 (252)
Q Consensus 155 l~~~l~~~~----------~~~p~~iQ~~~~p~~~~~~~~~~~~~-----------~g~gKt~~~~~~~l~~i~~~~~~~ 213 (252)
+-..+..+. ...+..+..++.-.......+++-.. ...|++..-++.+...+ ..
T Consensus 310 la~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v-~~---- 384 (593)
T KOG0344|consen 310 LADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQLV-AS---- 384 (593)
T ss_pred HHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHHH-hc----
Confidence 333332221 33344444433222211122222111 12333333333333322 22
Q ss_pred CCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 214 PFLPGEGPYGLIICPSRELARQTHDIIQ 241 (252)
Q Consensus 214 ~~~~~~~~~~LIf~~tr~~a~~i~~~l~ 241 (252)
+-.|-+|||+-+.+.|.+++..|.
T Consensus 385 ----g~~PP~lIfVQs~eRak~L~~~L~ 408 (593)
T KOG0344|consen 385 ----GFKPPVLIFVQSKERAKQLFEELE 408 (593)
T ss_pred ----cCCCCeEEEEecHHHHHHHHHHhh
Confidence 235779999999999999999985
No 47
>PRK00254 ski2-like helicase; Provisional
Probab=99.80 E-value=1.1e-18 Score=161.09 Aligned_cols=131 Identities=18% Similarity=0.182 Sum_probs=93.4
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeee
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAI 83 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~ 83 (252)
+++|+|++++||||||||++|.+|+++.+... +.++||++|||+||.|+++.++.+.+ .+ +++..++
T Consensus 36 ~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~----------~~~~l~l~P~~aLa~q~~~~~~~~~~-~g--~~v~~~~ 102 (720)
T PRK00254 36 VLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE----------GGKAVYLVPLKALAEEKYREFKDWEK-LG--LRVAMTT 102 (720)
T ss_pred HhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc----------CCeEEEEeChHHHHHHHHHHHHHHhh-cC--CEEEEEe
Confidence 68999999999999999999999999887642 45799999999999999999988753 45 8888999
Q ss_pred CCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHHHC
Q psy7786 84 GGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAK 162 (252)
Q Consensus 84 g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~~~ 162 (252)
|+.+...+ .+ ..++|. |. ||+++..+.......++ ++.++|.||. +.+.+......+...+.+.
T Consensus 103 Gd~~~~~~--~~-~~~~Ii--V~----Tpe~~~~ll~~~~~~l~-~l~lvViDE~-----H~l~~~~rg~~le~il~~l 166 (720)
T PRK00254 103 GDYDSTDE--WL-GKYDII--IA----TAEKFDSLLRHGSSWIK-DVKLVVADEI-----HLIGSYDRGATLEMILTHM 166 (720)
T ss_pred CCCCCchh--hh-ccCCEE--EE----cHHHHHHHHhCCchhhh-cCCEEEEcCc-----CccCCccchHHHHHHHHhc
Confidence 98765322 22 234441 22 36666555443333344 4899999996 4555555556655555543
No 48
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.79 E-value=5.2e-19 Score=168.28 Aligned_cols=129 Identities=19% Similarity=0.201 Sum_probs=94.0
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcc-e
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLR-T 79 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~-~ 79 (252)
||.++.|+|++++||||||||+ |.+|+...+.. .+++++|++||||||.|+++.++.+++.++.... +
T Consensus 87 i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~----------~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i 155 (1171)
T TIGR01054 87 AKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK----------KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNI 155 (1171)
T ss_pred HHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh----------cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeee
Confidence 4678999999999999999996 88888776532 2678999999999999999999999998773221 2
Q ss_pred eeeeCCcccCcchh---hhhhc-ccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCccccccc-------
Q psy7786 80 CLAIGGVPMNQSLD---VIKKG-IQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRL------- 148 (252)
Q Consensus 80 ~~~~g~~~~~~~~~---~l~~~-~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~------- 148 (252)
..++||.+..++.+ .+.++ ++|. | +||+++..+..+ +...++++|.||+ ++|.+
T Consensus 156 ~~~~Gg~~~~e~~~~~~~l~~~~~dIl--V----~Tp~rL~~~~~~----l~~~~~~iVvDEa-----D~~L~~~k~vd~ 220 (1171)
T TIGR01054 156 GAYHSRLPTKEKKEFMERIENGDFDIL--I----TTTMFLSKNYDE----LGPKFDFIFVDDV-----DALLKASKNVDK 220 (1171)
T ss_pred eeecCCCCHHHHHHHHHHHhcCCCCEE--E----ECHHHHHHHHHH----hcCCCCEEEEeCh-----HhhhhccccHHH
Confidence 34678887765433 33333 5652 2 347776554332 2225889999997 67766
Q ss_pred ----CCCCHHH
Q psy7786 149 ----MKLPESL 155 (252)
Q Consensus 149 ----~~l~~~l 155 (252)
+||.++.
T Consensus 221 il~llGF~~e~ 231 (1171)
T TIGR01054 221 LLKLLGFSEEL 231 (1171)
T ss_pred HHHHcCCCHHH
Confidence 8899864
No 49
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.78 E-value=2.4e-18 Score=151.67 Aligned_cols=119 Identities=18% Similarity=0.237 Sum_probs=81.4
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
|+.+++|+|+++++|||||||++|.+|++.. +..+||++|||||+.|+.+.++. .+ +.+.
T Consensus 20 i~~~l~g~dvlv~apTGsGKTl~y~lp~l~~--------------~~~~lVi~P~~~L~~dq~~~l~~----~g--i~~~ 79 (470)
T TIGR00614 20 INAVLLGRDCFVVMPTGGGKSLCYQLPALCS--------------DGITLVISPLISLMEDQVLQLKA----SG--IPAT 79 (470)
T ss_pred HHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc--------------CCcEEEEecHHHHHHHHHHHHHH----cC--CcEE
Confidence 4678999999999999999999999998741 23599999999999998887764 34 6666
Q ss_pred eeeCCcccCcchhhh---hhc-ccccCCccccccCCccccCCChhHHHH-HhhhhceeeccCCCCCcccccccCC
Q psy7786 81 LAIGGVPMNQSLDVI---KKG-IQYNDPIKTSWRAPRCILSLPDQVHDI-IRRNLRILVEGDDVPPACCSFRLMK 150 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l---~~~-~~i~~~i~t~~~~p~~l~~~~~~~~~~-l~~~~~~~V~de~~~~~~~~~~~~~ 150 (252)
.+.|+.+..++...+ .++ .++ ++.+|+++.......... ....+.++|.||+ +.+.+.|
T Consensus 80 ~l~~~~~~~~~~~i~~~~~~~~~~i------l~~TPe~l~~~~~~~~~l~~~~~i~~iViDEa-----H~i~~~g 143 (470)
T TIGR00614 80 FLNSSQSKEQQKNVLTDLKDGKIKL------LYVTPEKCSASNRLLQTLEERKGITLIAVDEA-----HCISQWG 143 (470)
T ss_pred EEeCCCCHHHHHHHHHHHhcCCCCE------EEECHHHHcCchhHHHHHHhcCCcCEEEEeCC-----cccCccc
Confidence 677765544333222 222 333 334588876544222221 3445899999997 5555544
No 50
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.76 E-value=5.3e-19 Score=160.76 Aligned_cols=117 Identities=15% Similarity=0.182 Sum_probs=95.5
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.++.|+|++++++||||||+||++|+++.++.. ..++||+||||||.|+.+++..+.+++| +++.
T Consensus 101 I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g-----------~~v~IVTpTrELA~Qdae~m~~L~k~lG--LsV~ 167 (970)
T PRK12899 101 LGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTG-----------KPVHLVTVNDYLAQRDCEWVGSVLRWLG--LTTG 167 (970)
T ss_pred hhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc-----------CCeEEEeCCHHHHHHHHHHHHHHHhhcC--CeEE
Confidence 57889999999999999999999999999887642 1389999999999999999999999998 8999
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccc-cCCChhHHHHH------hhhhceeeccCC
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCI-LSLPDQVHDII------RRNLRILVEGDD 138 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l-~~~~~~~~~~l------~~~~~~~V~de~ 138 (252)
+++||.+..++.+.+ ++|| +|+||+++ .++.......+ .+.++++|.||+
T Consensus 168 ~i~GG~~~~eq~~~y--~~DI------VygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEA 224 (970)
T PRK12899 168 VLVSGSPLEKRKEIY--QCDV------VYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEV 224 (970)
T ss_pred EEeCCCCHHHHHHHc--CCCE------EEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEech
Confidence 999999988877665 4777 34569999 77665542222 234689998885
No 51
>PRK01172 ski2-like helicase; Provisional
Probab=99.76 E-value=4.2e-18 Score=156.34 Aligned_cols=129 Identities=23% Similarity=0.206 Sum_probs=90.5
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCL 81 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~ 81 (252)
+.+++|+|++++||||||||++|.+++++.+.. +.+++|++|+|+||.|+++.++++. ..| +++..
T Consensus 32 ~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~-----------~~k~v~i~P~raLa~q~~~~~~~l~-~~g--~~v~~ 97 (674)
T PRK01172 32 EQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA-----------GLKSIYIVPLRSLAMEKYEELSRLR-SLG--MRVKI 97 (674)
T ss_pred HHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh-----------CCcEEEEechHHHHHHHHHHHHHHh-hcC--CeEEE
Confidence 456889999999999999999999999987753 3469999999999999999998875 345 78888
Q ss_pred eeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHH
Q psy7786 82 AIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRAL 159 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l 159 (252)
.+|+.+... +.+ +..++. +. ||+++..+..+....+.+ +.++|.||. +.+.+....+.+...+
T Consensus 98 ~~G~~~~~~--~~~-~~~dIi--v~----Tpek~~~l~~~~~~~l~~-v~lvViDEa-----H~l~d~~rg~~le~ll 160 (674)
T PRK01172 98 SIGDYDDPP--DFI-KRYDVV--IL----TSEKADSLIHHDPYIIND-VGLIVADEI-----HIIGDEDRGPTLETVL 160 (674)
T ss_pred EeCCCCCCh--hhh-ccCCEE--EE----CHHHHHHHHhCChhHHhh-cCEEEEecc-----hhccCCCccHHHHHHH
Confidence 888865432 222 334542 33 376655554443334444 899999996 4555445555543333
No 52
>PTZ00110 helicase; Provisional
Probab=99.76 E-value=1.2e-17 Score=149.16 Aligned_cols=136 Identities=40% Similarity=0.664 Sum_probs=116.9
Q ss_pred CccccCCChhHHHHHhhhhceee-ccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccC
Q psy7786 112 PRCILSLPDQVHDIIRRNLRILV-EGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFT 190 (252)
Q Consensus 112 p~~l~~~~~~~~~~l~~~~~~~V-~de~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~ 190 (252)
+..+..+..+....++...++.| .++++|++..+|.+++|++.+++.+.+.++..|+++|.+++|..+.|+|++++++|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApT 176 (545)
T PTZ00110 97 HPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAET 176 (545)
T ss_pred ChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCC
Confidence 34556677777777777666665 68889999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHhhCCCC
Q psy7786 191 GSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 191 g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~~~~i~ 250 (252)
|+|||++|++|.+.++..+.. .....++++||++|||+||.|+.+.+++++...+++
T Consensus 177 GSGKTlaylLP~l~~i~~~~~---~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~ 233 (545)
T PTZ00110 177 GSGKTLAFLLPAIVHINAQPL---LRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIR 233 (545)
T ss_pred CChHHHHHHHHHHHHHHhccc---ccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCcc
Confidence 999999999999988875431 122346899999999999999999999999877654
No 53
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.74 E-value=1.3e-17 Score=154.67 Aligned_cols=124 Identities=15% Similarity=0.207 Sum_probs=86.3
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
|+.+++|+|+++++|||+|||++|.+|++.. ...+|||+|++||+.++...+.. .+ +++.
T Consensus 469 I~aiL~GrDVLVimPTGSGKSLcYQLPAL~~--------------~GiTLVISPLiSLmqDQV~~L~~----~G--I~Aa 528 (1195)
T PLN03137 469 INATMSGYDVFVLMPTGGGKSLTYQLPALIC--------------PGITLVISPLVSLIQDQIMNLLQ----AN--IPAA 528 (1195)
T ss_pred HHHHHcCCCEEEEcCCCccHHHHHHHHHHHc--------------CCcEEEEeCHHHHHHHHHHHHHh----CC--CeEE
Confidence 5678999999999999999999999999842 23599999999999855443332 34 7888
Q ss_pred eeeCCcccCcchhhhhh------cccccCCccccccCCccccCCC--hhHHHHH--hhhhceeeccCCCCCcccccccCC
Q psy7786 81 LAIGGVPMNQSLDVIKK------GIQYNDPIKTSWRAPRCILSLP--DQVHDII--RRNLRILVEGDDVPPACCSFRLMK 150 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~------~~~i~~~i~t~~~~p~~l~~~~--~~~~~~l--~~~~~~~V~de~~~~~~~~~~~~~ 150 (252)
.+.|+.+..++.+.+++ .+++ +|.+|+++.... .+....+ ...+.++|.||+ +.+.+.|
T Consensus 529 ~L~s~~s~~eq~~ilr~l~s~~g~~~I------LyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEA-----HcVSqWG 597 (1195)
T PLN03137 529 SLSAGMEWAEQLEILQELSSEYSKYKL------LYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEA-----HCVSQWG 597 (1195)
T ss_pred EEECCCCHHHHHHHHHHHHhcCCCCCE------EEEChHHhhcchHHHHHHHhhhhccccceeccCcc-----hhhhhcc
Confidence 89999888777666654 2333 345588876432 1111111 234778899997 5566665
Q ss_pred --CCHHH
Q psy7786 151 --LPESL 155 (252)
Q Consensus 151 --l~~~l 155 (252)
|.++.
T Consensus 598 hDFRpdY 604 (1195)
T PLN03137 598 HDFRPDY 604 (1195)
T ss_pred cchHHHH
Confidence 55554
No 54
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.74 E-value=3e-17 Score=146.16 Aligned_cols=136 Identities=38% Similarity=0.595 Sum_probs=118.3
Q ss_pred cccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCc
Q psy7786 114 CILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSG 193 (252)
Q Consensus 114 ~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~g 193 (252)
...++.......+++...+.|.++++|+++.+|.++++++.+++.+.+.|+..|+++|.+++|..+.|+|++++++||+|
T Consensus 91 ~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSG 170 (518)
T PLN00206 91 STSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSG 170 (518)
T ss_pred hhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCC
Confidence 33456777888888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHhhCCCC
Q psy7786 194 KTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 194 Kt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~~~~i~ 250 (252)
||++|++|++.++...... ......++++||++|||+||.|+.+.++.++..++++
T Consensus 171 KTlayllPil~~l~~~~~~-~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~ 226 (518)
T PLN00206 171 KTASFLVPIISRCCTIRSG-HPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFK 226 (518)
T ss_pred ccHHHHHHHHHHHHhhccc-cccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCce
Confidence 9999999999887753211 1122356899999999999999999999998877654
No 55
>KOG0330|consensus
Probab=99.73 E-value=1.5e-17 Score=136.30 Aligned_cols=99 Identities=40% Similarity=0.588 Sum_probs=93.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEE
Q psy7786 144 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG 223 (252)
Q Consensus 144 ~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 223 (252)
.+|.++++.+++++.+.+.+++.|++||+.++|..+.|+|++..+.||+|||.+|++|++++++.+. .-+++
T Consensus 61 ~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p--------~~~~~ 132 (476)
T KOG0330|consen 61 KSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP--------KLFFA 132 (476)
T ss_pred cchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC--------CCceE
Confidence 6899999999999999999999999999999999999999999999999999999999999999753 34789
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhCCCC
Q psy7786 224 LIICPSRELARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 224 LIf~~tr~~a~~i~~~l~~l~~~~~i~ 250 (252)
+|++||||+|.||++.+..++..+|++
T Consensus 133 lVLtPtRELA~QI~e~fe~Lg~~iglr 159 (476)
T KOG0330|consen 133 LVLTPTRELAQQIAEQFEALGSGIGLR 159 (476)
T ss_pred EEecCcHHHHHHHHHHHHHhccccCeE
Confidence 999999999999999999999999875
No 56
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.73 E-value=6.8e-18 Score=132.86 Aligned_cols=139 Identities=27% Similarity=0.420 Sum_probs=103.6
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCL 81 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~ 81 (252)
+.+.+|+|+++.+|||+|||++|++|+++.+..... ..+++++|++||++|+.|+.+.++.+....+ +.+..
T Consensus 31 ~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~------~~~~~viii~p~~~L~~q~~~~~~~~~~~~~--~~~~~ 102 (203)
T cd00268 31 PPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPK------KDGPQALILAPTRELALQIAEVARKLGKHTN--LKVVV 102 (203)
T ss_pred HHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcc------cCCceEEEEcCCHHHHHHHHHHHHHHhccCC--ceEEE
Confidence 456789999999999999999999999998877521 1378999999999999999999999987765 78888
Q ss_pred eeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 82 AIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
.+|+.+..+....+..++++. + ++|+.+.....+....+.. +.++|.||. +.+.+.++...+...+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~ii--v----~T~~~l~~~l~~~~~~~~~-l~~lIvDE~-----h~~~~~~~~~~~~~~~~ 169 (203)
T cd00268 103 IYGGTSIDKQIRKLKRGPHIV--V----ATPGRLLDLLERGKLDLSK-VKYLVLDEA-----DRMLDMGFEDQIREILK 169 (203)
T ss_pred EECCCCHHHHHHHhcCCCCEE--E----EChHHHHHHHHcCCCChhh-CCEEEEeCh-----HHhhccChHHHHHHHHH
Confidence 999987766666665555552 2 3466665554444434444 788998986 55666666666654444
No 57
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.72 E-value=1.1e-16 Score=149.23 Aligned_cols=107 Identities=19% Similarity=0.222 Sum_probs=79.7
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCc
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGV 86 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~ 86 (252)
++|.+++|+||||||++|++|++..+.. +.+++|++||++||.|+++.++++....+ +++..++|+.
T Consensus 472 ~~d~Ll~adTGsGKT~val~a~l~al~~-----------g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~--i~v~~Lsg~~ 538 (926)
T TIGR00580 472 PMDRLVCGDVGFGKTEVAMRAAFKAVLD-----------GKQVAVLVPTTLLAQQHFETFKERFANFP--VTIELLSRFR 538 (926)
T ss_pred cCCEEEECCCCccHHHHHHHHHHHHHHh-----------CCeEEEEeCcHHHHHHHHHHHHHHhccCC--cEEEEEeccc
Confidence 3799999999999999999999987743 46899999999999999999999877666 8888888887
Q ss_pred ccCcchhhh---hhc-ccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 87 PMNQSLDVI---KKG-IQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 87 ~~~~~~~~l---~~~-~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
+..++.+.+ .++ ++|. |. ||..+. ....+++ +.++|.||.
T Consensus 539 ~~~e~~~~~~~l~~g~~dIV--IG----Tp~ll~-----~~v~f~~-L~llVIDEa 582 (926)
T TIGR00580 539 SAKEQNEILKELASGKIDIL--IG----THKLLQ-----KDVKFKD-LGLLIIDEE 582 (926)
T ss_pred cHHHHHHHHHHHHcCCceEE--Ec----hHHHhh-----CCCCccc-CCEEEeecc
Confidence 765544433 333 5552 23 353221 1123444 899999996
No 58
>KOG0333|consensus
Probab=99.72 E-value=1.5e-17 Score=140.99 Aligned_cols=138 Identities=33% Similarity=0.565 Sum_probs=125.1
Q ss_pred ccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCC
Q psy7786 113 RCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGS 192 (252)
Q Consensus 113 ~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~ 192 (252)
..+..|.+++|..|+....+.+.+.++|+|+.+|.+.+|+.++++.+.+.++..|++||..++|..+..+|++..+.||+
T Consensus 214 k~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgs 293 (673)
T KOG0333|consen 214 KVLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGS 293 (673)
T ss_pred hhHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccC
Confidence 45777888889999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHhHHHHHHHHHhhhccCCC-CCCCCcEEEEEcCcHHHHHHHHHHHHHHHhhCCCC
Q psy7786 193 GKTLVFVLPILMFCLEQETKLPF-LPGEGPYGLIICPSRELARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 193 gKt~~~~~~~l~~i~~~~~~~~~-~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~~~~i~ 250 (252)
|||.+|++|++.++........+ ....+|+++|++|||++|+||.++-.+|++.++++
T Consensus 294 Gktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r 352 (673)
T KOG0333|consen 294 GKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIR 352 (673)
T ss_pred CccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccce
Confidence 99999999999998865544333 34568999999999999999999999999998864
No 59
>KOG0349|consensus
Probab=99.71 E-value=5.4e-18 Score=140.85 Aligned_cols=96 Identities=25% Similarity=0.298 Sum_probs=80.7
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHHHhCC-CCcceeeeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHH
Q psy7786 48 YGLIICPSRELARQTHDIIQYYCAALP-IPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDII 126 (252)
Q Consensus 48 ~~lil~ptreLa~q~~~~~~~l~~~~~-~~~~~~~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l 126 (252)
+++|+-|.||||.|+++.+++|-.++. ..+|.....||...+.|..++.++.+|+ + ++|+|+..++......+
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~iv--v----GtpgRl~~~is~g~~~l 361 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIV--V----GTPGRLLQPISKGLVTL 361 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceee--e----cCchhhhhhhhccceee
Confidence 799999999999999999999988874 3478888999999999999999999983 3 45999999999888888
Q ss_pred hhhhceeeccCCCCCcccccccCCCCHHH
Q psy7786 127 RRNLRILVEGDDVPPACCSFRLMKLPESL 155 (252)
Q Consensus 127 ~~~~~~~V~de~~~~~~~~~~~~~l~~~l 155 (252)
.. .+|+|.||+ +.+...+.++.+
T Consensus 362 t~-crFlvlDea-----d~lL~qgy~d~I 384 (725)
T KOG0349|consen 362 TH-CRFLVLDEA-----DLLLGQGYDDKI 384 (725)
T ss_pred ee-eEEEEecch-----hhhhhcccHHHH
Confidence 87 899999997 555555555544
No 60
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.71 E-value=9.3e-17 Score=146.86 Aligned_cols=113 Identities=24% Similarity=0.304 Sum_probs=82.4
Q ss_pred cccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeee
Q psy7786 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLA 82 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~ 82 (252)
.+.+|+|+++++|||||||+...+.+++.+... +-+++|++|+|+||.+.++.++++.. .| +++...
T Consensus 43 ~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~----------~~k~vYivPlkALa~Ek~~~~~~~~~-~G--irV~~~ 109 (766)
T COG1204 43 GLLSDENVLISAPTGSGKTLIALLAILSTLLEG----------GGKVVYIVPLKALAEEKYEEFSRLEE-LG--IRVGIS 109 (766)
T ss_pred cccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc----------CCcEEEEeChHHHHHHHHHHhhhHHh-cC--CEEEEe
Confidence 456689999999999999999999999988764 34699999999999999999996643 45 899999
Q ss_pred eCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 83 IGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 83 ~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
+|+.+... +.+. +.+| ++ +||..+.+.......... .+..+|.||.
T Consensus 110 TgD~~~~~--~~l~-~~~V---iV---tT~EK~Dsl~R~~~~~~~-~V~lvViDEi 155 (766)
T COG1204 110 TGDYDLDD--ERLA-RYDV---IV---TTPEKLDSLTRKRPSWIE-EVDLVVIDEI 155 (766)
T ss_pred cCCcccch--hhhc-cCCE---EE---EchHHhhHhhhcCcchhh-cccEEEEeee
Confidence 99966443 2222 2333 11 235555554444444333 4888888884
No 61
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.70 E-value=2.8e-17 Score=150.33 Aligned_cols=106 Identities=21% Similarity=0.251 Sum_probs=82.4
Q ss_pred CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCcc
Q psy7786 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVP 87 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~~ 87 (252)
+|.+++|+||||||++|++|+++.+. .+.+++|++||++||.|+++.++++...++ +++..++|+.+
T Consensus 283 ~~~Ll~~~TGSGKT~va~~~il~~~~-----------~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~--i~v~ll~G~~~ 349 (681)
T PRK10917 283 MNRLLQGDVGSGKTVVAALAALAAIE-----------AGYQAALMAPTEILAEQHYENLKKLLEPLG--IRVALLTGSLK 349 (681)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHHHH-----------cCCeEEEEeccHHHHHHHHHHHHHHHhhcC--cEEEEEcCCCC
Confidence 48999999999999999999998763 267899999999999999999999998887 89999999988
Q ss_pred cCcchhh---hhhc-ccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 88 MNQSLDV---IKKG-IQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 88 ~~~~~~~---l~~~-~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
..++.+. +.++ +++. | +||+++.+ ...+.+ +.++|.||.
T Consensus 350 ~~~r~~~~~~l~~g~~~Iv--V----gT~~ll~~-----~v~~~~-l~lvVIDE~ 392 (681)
T PRK10917 350 GKERREILEAIASGEADIV--I----GTHALIQD-----DVEFHN-LGLVIIDEQ 392 (681)
T ss_pred HHHHHHHHHHHhCCCCCEE--E----chHHHhcc-----cchhcc-cceEEEech
Confidence 6554443 3333 5552 2 23665543 123444 899999996
No 62
>KOG0346|consensus
Probab=99.70 E-value=6.5e-17 Score=134.49 Aligned_cols=103 Identities=34% Similarity=0.536 Sum_probs=95.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEE
Q psy7786 144 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG 223 (252)
Q Consensus 144 ~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 223 (252)
.+|.++++.+.+++.+.+.||..||.+|+.++|..+.|+|++..+.||||||.+|++|+++.++...... ..+.++.+
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~--~~e~~~sa 96 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTN--DGEQGPSA 96 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcc--ccccccee
Confidence 4799999999999999999999999999999999999999999999999999999999999999765433 55778999
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhCC
Q psy7786 224 LIICPSRELARQTHDIIQYYCAALP 248 (252)
Q Consensus 224 LIf~~tr~~a~~i~~~l~~l~~~~~ 248 (252)
+|++||||+|.|++..+.++..+.+
T Consensus 97 ~iLvPTkEL~qQvy~viekL~~~c~ 121 (569)
T KOG0346|consen 97 VILVPTKELAQQVYKVIEKLVEYCS 121 (569)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887764
No 63
>KOG0331|consensus
Probab=99.70 E-value=7.8e-17 Score=139.05 Aligned_cols=105 Identities=44% Similarity=0.730 Sum_probs=95.4
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEE
Q psy7786 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGL 224 (252)
Q Consensus 145 ~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~L 224 (252)
.|+++++++++...+...++..|++||.+.||..+.|+|++.++.||+|||++|++|.+.++... ........+|++|
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~--~~~~~~~~~P~vL 169 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNE--QGKLSRGDGPIVL 169 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhc--cccccCCCCCeEE
Confidence 79999999999999999999999999999999999999999999999999999999999998863 1123446689999
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhCCCCC
Q psy7786 225 IICPSRELARQTHDIIQYYCAALPIGS 251 (252)
Q Consensus 225 If~~tr~~a~~i~~~l~~l~~~~~i~~ 251 (252)
|++||||||.|+.+.++++++.+++++
T Consensus 170 VL~PTRELA~QV~~~~~~~~~~~~~~~ 196 (519)
T KOG0331|consen 170 VLAPTRELAVQVQAEAREFGKSLRLRS 196 (519)
T ss_pred EEcCcHHHHHHHHHHHHHHcCCCCccE
Confidence 999999999999999999999887643
No 64
>KOG0339|consensus
Probab=99.69 E-value=7.4e-17 Score=136.33 Aligned_cols=139 Identities=37% Similarity=0.588 Sum_probs=124.8
Q ss_pred cCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEcc
Q psy7786 110 RAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAF 189 (252)
Q Consensus 110 ~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~ 189 (252)
..|..+-.+-.+....++..+.+-|.+-..++++.+|...+|...+...+.+.-++.|+++|.+.+|..+.|+|++.++.
T Consensus 189 ~e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAk 268 (731)
T KOG0339|consen 189 EEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAK 268 (731)
T ss_pred cChhhhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheee
Confidence 33555666666666677777889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHhhCCCCC
Q psy7786 190 TGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIGS 251 (252)
Q Consensus 190 ~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~~~~i~~ 251 (252)
+|+|||.+|++|++.+++++... ..+.+|-.+|+||||++|.||+.++++|++..+++.
T Consensus 269 tgSgktaAfi~pm~~himdq~eL---~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~ 327 (731)
T KOG0339|consen 269 TGSGKTAAFIWPMIVHIMDQPEL---KPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRV 327 (731)
T ss_pred ccCcchhHHHHHHHHHhcchhhh---cCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceE
Confidence 99999999999999999987633 346789999999999999999999999999999875
No 65
>KOG0334|consensus
Probab=99.69 E-value=9.1e-17 Score=145.88 Aligned_cols=134 Identities=41% Similarity=0.657 Sum_probs=117.6
Q ss_pred cccCCChhHHHHHhhhhc-eeeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCC
Q psy7786 114 CILSLPDQVHDIIRRNLR-ILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGS 192 (252)
Q Consensus 114 ~l~~~~~~~~~~l~~~~~-~~V~de~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~ 192 (252)
-+..+.......++..+. +.|.+-++|.++.+|.+.|++..+++.+.++++..|++||.++||+++.|+|++.++.||+
T Consensus 334 di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgS 413 (997)
T KOG0334|consen 334 DIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGS 413 (997)
T ss_pred hHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCC
Confidence 344444445555666666 8888889999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHhhCCCC
Q psy7786 193 GKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 193 gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~~~~i~ 250 (252)
|||++|++|++.+++.+. +.....+|-+||+||||++|.||.++++.|+..+++.
T Consensus 414 GKT~af~LPmirhi~dQr---~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir 468 (997)
T KOG0334|consen 414 GKTLAFLLPMIRHIKDQR---PLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIR 468 (997)
T ss_pred ccchhhhcchhhhhhcCC---ChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCce
Confidence 999999999998887764 3345668999999999999999999999999988765
No 66
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.68 E-value=2.1e-16 Score=150.28 Aligned_cols=106 Identities=18% Similarity=0.172 Sum_probs=78.9
Q ss_pred CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCcc
Q psy7786 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVP 87 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~~ 87 (252)
+|++++++||||||.+|+.+++..+. ++.+++|++||++||.|+++.+++.....+ +++.+++|+.+
T Consensus 622 ~d~Ll~a~TGsGKT~val~aa~~~~~-----------~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~--v~i~~l~g~~s 688 (1147)
T PRK10689 622 MDRLVCGDVGFGKTEVAMRAAFLAVE-----------NHKQVAVLVPTTLLAQQHYDNFRDRFANWP--VRIEMLSRFRS 688 (1147)
T ss_pred CCEEEEcCCCcCHHHHHHHHHHHHHH-----------cCCeEEEEeCcHHHHHHHHHHHHHhhccCC--ceEEEEECCCC
Confidence 89999999999999999998876642 267899999999999999999998665555 78888889888
Q ss_pred cCcchhhhhh----cccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 88 MNQSLDVIKK----GIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 88 ~~~~~~~l~~----~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
.+++.+.+.+ .++|. |. ||..+.. ...+. .+.++|.||+
T Consensus 689 ~~e~~~il~~l~~g~~dIV--Vg----Tp~lL~~-----~v~~~-~L~lLVIDEa 731 (1147)
T PRK10689 689 AKEQTQILAEAAEGKIDIL--IG----THKLLQS-----DVKWK-DLGLLIVDEE 731 (1147)
T ss_pred HHHHHHHHHHHHhCCCCEE--EE----CHHHHhC-----CCCHh-hCCEEEEech
Confidence 7777655542 35552 22 3543321 11233 4889999986
No 67
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.68 E-value=8e-16 Score=139.34 Aligned_cols=123 Identities=18% Similarity=0.250 Sum_probs=81.7
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
|+.+++|+|+++.+|||||||++|.+|++.. ...+||++||+||+.|+.+.++.+ + +.+.
T Consensus 34 i~~il~g~dvlv~apTGsGKTl~y~lpal~~--------------~g~tlVisPl~sL~~dqv~~l~~~----g--i~~~ 93 (607)
T PRK11057 34 IDAVLSGRDCLVVMPTGGGKSLCYQIPALVL--------------DGLTLVVSPLISLMKDQVDQLLAN----G--VAAA 93 (607)
T ss_pred HHHHHcCCCEEEEcCCCchHHHHHHHHHHHc--------------CCCEEEEecHHHHHHHHHHHHHHc----C--CcEE
Confidence 4678999999999999999999999998842 225899999999999998877653 4 6666
Q ss_pred eeeCCcccCcchhhhh---hc-ccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCC--CCHH
Q psy7786 81 LAIGGVPMNQSLDVIK---KG-IQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMK--LPES 154 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~---~~-~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~--l~~~ 154 (252)
.+.++.+.+++...+. .+ .++ +|.+|+++....-.. ......+.++|.||+ +.+.+.| |.++
T Consensus 94 ~~~s~~~~~~~~~~~~~~~~g~~~i------l~~tPe~l~~~~~~~-~l~~~~l~~iVIDEa-----H~i~~~G~~fr~~ 161 (607)
T PRK11057 94 CLNSTQTREQQLEVMAGCRTGQIKL------LYIAPERLMMDNFLE-HLAHWNPALLAVDEA-----HCISQWGHDFRPE 161 (607)
T ss_pred EEcCCCCHHHHHHHHHHHhCCCCcE------EEEChHHhcChHHHH-HHhhCCCCEEEEeCc-----cccccccCcccHH
Confidence 6777655554433322 22 222 234577775421111 112235788999997 5555544 5544
Q ss_pred H
Q psy7786 155 L 155 (252)
Q Consensus 155 l 155 (252)
.
T Consensus 162 y 162 (607)
T PRK11057 162 Y 162 (607)
T ss_pred H
Confidence 3
No 68
>KOG0340|consensus
Probab=99.68 E-value=1.1e-16 Score=129.91 Aligned_cols=100 Identities=45% Similarity=0.601 Sum_probs=93.8
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcE
Q psy7786 143 CCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPY 222 (252)
Q Consensus 143 ~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~ 222 (252)
...|..+|+++++.+.+..++++.||++|..++|..+.|+|++.++.||+|||.+|.+|.++++.++ .++..
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed--------P~giF 77 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED--------PYGIF 77 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC--------CCcce
Confidence 3679999999999999999999999999999999999999999999999999999999999988765 35788
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhCCCC
Q psy7786 223 GLIICPSRELARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 223 ~LIf~~tr~~a~~i~~~l~~l~~~~~i~ 250 (252)
++||+|||++|.|+++.+..+++.++++
T Consensus 78 alvlTPTrELA~QiaEQF~alGk~l~lK 105 (442)
T KOG0340|consen 78 ALVLTPTRELALQIAEQFIALGKLLNLK 105 (442)
T ss_pred EEEecchHHHHHHHHHHHHHhcccccce
Confidence 9999999999999999999999988875
No 69
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.67 E-value=9.5e-16 Score=138.87 Aligned_cols=111 Identities=16% Similarity=0.235 Sum_probs=78.1
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
|+.+++|+|+++++|||+|||++|.+|++.. +-.++|++|+++|+.|+.+.++.+ | +.+.
T Consensus 22 i~~il~g~dvlv~~PTG~GKTl~y~lpal~~--------------~g~~lVisPl~sL~~dq~~~l~~~----g--i~~~ 81 (591)
T TIGR01389 22 ISHVLDGRDVLVVMPTGGGKSLCYQVPALLL--------------KGLTVVISPLISLMKDQVDQLRAA----G--VAAA 81 (591)
T ss_pred HHHHHcCCCEEEEcCCCccHhHHHHHHHHHc--------------CCcEEEEcCCHHHHHHHHHHHHHc----C--CcEE
Confidence 4678999999999999999999999998731 224899999999999998877753 4 6777
Q ss_pred eeeCCcccCcchhhhhh----cccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 81 LAIGGVPMNQSLDVIKK----GIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~----~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
.+.|+.+..++.+.+.. ..++ ++.+|+++....-..... ...+.++|.||+
T Consensus 82 ~~~s~~~~~~~~~~~~~l~~~~~~i------l~~tpe~l~~~~~~~~l~-~~~l~~iViDEa 136 (591)
T TIGR01389 82 YLNSTLSAKEQQDIEKALVNGELKL------LYVAPERLEQDYFLNMLQ-RIPIALVAVDEA 136 (591)
T ss_pred EEeCCCCHHHHHHHHHHHhCCCCCE------EEEChhHhcChHHHHHHh-cCCCCEEEEeCC
Confidence 78888776654433322 2333 234588776432222222 235889999996
No 70
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.67 E-value=1.5e-17 Score=126.97 Aligned_cols=137 Identities=25% Similarity=0.339 Sum_probs=98.9
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCL 81 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~ 81 (252)
+.+.+|+|+++.||||||||++|.+|+++.+.... ..++++++|+++|+.|+.+.++.+....+ +++..
T Consensus 9 ~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~---------~~~~lii~P~~~l~~q~~~~~~~~~~~~~--~~~~~ 77 (169)
T PF00270_consen 9 EAIISGKNVLISAPTGSGKTLAYILPALNRLQEGK---------DARVLIIVPTRALAEQQFERLRKFFSNTN--VRVVL 77 (169)
T ss_dssp HHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTS---------SSEEEEEESSHHHHHHHHHHHHHHTTTTT--SSEEE
T ss_pred HHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCC---------CceEEEEeecccccccccccccccccccc--ccccc
Confidence 45668999999999999999999999999887652 23799999999999999999999887755 78888
Q ss_pred eeCCcccC-cchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 82 AIGGVPMN-QSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 82 ~~g~~~~~-~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
++|+.+.. .....+..++++. + ++|+++..........+.+ +.++|.||. +.+....+...+...+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~il--v----~T~~~l~~~~~~~~~~~~~-~~~iViDE~-----h~l~~~~~~~~~~~i~~ 145 (169)
T PF00270_consen 78 LHGGQSISEDQREVLSNQADIL--V----TTPEQLLDLISNGKINISR-LSLIVIDEA-----HHLSDETFRAMLKSILR 145 (169)
T ss_dssp ESTTSCHHHHHHHHHHTTSSEE--E----EEHHHHHHHHHTTSSTGTT-ESEEEEETH-----HHHHHTTHHHHHHHHHH
T ss_pred cccccccccccccccccccccc--c----cCcchhhcccccccccccc-ceeeccCcc-----cccccccHHHHHHHHHH
Confidence 89987644 3334444456652 2 3366666555543224445 889999985 55555555555544444
Q ss_pred H
Q psy7786 161 A 161 (252)
Q Consensus 161 ~ 161 (252)
.
T Consensus 146 ~ 146 (169)
T PF00270_consen 146 R 146 (169)
T ss_dssp H
T ss_pred H
Confidence 4
No 71
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.66 E-value=1.4e-15 Score=138.41 Aligned_cols=105 Identities=22% Similarity=0.296 Sum_probs=79.6
Q ss_pred cEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCccc
Q psy7786 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVPM 88 (252)
Q Consensus 9 d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~~~ 88 (252)
+.+++++||||||++|++|++..+.. +.+++|++||++||.|+++.++++...++ +++..++|+.+.
T Consensus 258 ~~Ll~g~TGSGKT~va~l~il~~~~~-----------g~qvlilaPT~~LA~Q~~~~~~~l~~~~g--i~v~lltg~~~~ 324 (630)
T TIGR00643 258 NRLLQGDVGSGKTLVAALAMLAAIEA-----------GYQVALMAPTEILAEQHYNSLRNLLAPLG--IEVALLTGSLKG 324 (630)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHc-----------CCcEEEECCHHHHHHHHHHHHHHHhcccC--cEEEEEecCCCH
Confidence 68999999999999999999987642 56899999999999999999999988777 899999999877
Q ss_pred Ccchhhhh---hc-ccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 89 NQSLDVIK---KG-IQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 89 ~~~~~~l~---~~-~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
.++...+. ++ +++. | +||+++.+ ...+.+ +.++|.||.
T Consensus 325 ~~r~~~~~~i~~g~~~Ii--V----gT~~ll~~-----~~~~~~-l~lvVIDEa 366 (630)
T TIGR00643 325 KRRKELLETIASGQIHLV--V----GTHALIQE-----KVEFKR-LALVIIDEQ 366 (630)
T ss_pred HHHHHHHHHHhCCCCCEE--E----ecHHHHhc-----cccccc-cceEEEech
Confidence 65444333 22 3431 2 23554432 123444 899999996
No 72
>KOG0338|consensus
Probab=99.66 E-value=2.1e-16 Score=133.74 Aligned_cols=101 Identities=44% Similarity=0.576 Sum_probs=92.4
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEE
Q psy7786 144 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG 223 (252)
Q Consensus 144 ~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 223 (252)
.+|++|.+|..+++.+..+||..|++||..++|..+-|+|+..++.||+|||.+|++|.|.+++.... +-...++
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk-----~~~~TRV 255 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPK-----KVAATRV 255 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcc-----cCcceeE
Confidence 48999999999999999999999999999999999999999999999999999999999998876432 2335689
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhCCC
Q psy7786 224 LIICPSRELARQTHDIIQYYCAALPI 249 (252)
Q Consensus 224 LIf~~tr~~a~~i~~~l~~l~~~~~i 249 (252)
||+||||+||-|++...++++....|
T Consensus 256 LVL~PTRELaiQv~sV~~qlaqFt~I 281 (691)
T KOG0338|consen 256 LVLVPTRELAIQVHSVTKQLAQFTDI 281 (691)
T ss_pred EEEeccHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999988765
No 73
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.65 E-value=6.2e-16 Score=139.71 Aligned_cols=118 Identities=11% Similarity=0.010 Sum_probs=75.9
Q ss_pred CCcccCCCcEEEEcCCCchHHHH---------hHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHH
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLV---------FVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCA 71 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a---------~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~ 71 (252)
+|.+++|+|++++|+||||||.+ |++|.+..+..-. .+..+.+++|+.||||||.|+...+.+...
T Consensus 173 l~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~-----~~~~~~~ilvt~PrreLa~qi~~~i~~~vg 247 (675)
T PHA02653 173 FEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID-----PNFIERPIVLSLPRVALVRLHSITLLKSLG 247 (675)
T ss_pred HHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc-----cccCCcEEEEECcHHHHHHHHHHHHHHHhC
Confidence 35688999999999999999997 6667666553211 011356899999999999999988877654
Q ss_pred hCC-CCcceeeeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 72 ALP-IPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 72 ~~~-~~~~~~~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
+.. .++.+...+||.+. .+.....++.++ ++.++.-....+.+ +.++|.||+
T Consensus 248 ~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~I-------------lv~T~~L~l~~L~~-v~~VVIDEa 300 (675)
T PHA02653 248 FDEIDGSPISLKYGSIPD-ELINTNPKPYGL-------------VFSTHKLTLNKLFD-YGTVIIDEV 300 (675)
T ss_pred ccccCCceEEEEECCcch-HHhhcccCCCCE-------------EEEeCccccccccc-CCEEEcccc
Confidence 421 12667788999662 111111123333 33322211123444 899999997
No 74
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.65 E-value=7.4e-16 Score=132.23 Aligned_cols=207 Identities=16% Similarity=0.126 Sum_probs=133.0
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeee
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAI 83 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~ 83 (252)
+++|+|.++.++|+||||+.--+.-+++++... -+.|+++|..+||||-|+.++.=-..+| +++..-+
T Consensus 229 LLeG~nllVVSaTasGKTLIgElAGi~~~l~~g----------~KmlfLvPLVALANQKy~dF~~rYs~Lg--lkvairV 296 (830)
T COG1202 229 LLEGENLLVVSATASGKTLIGELAGIPRLLSGG----------KKMLFLVPLVALANQKYEDFKERYSKLG--LKVAIRV 296 (830)
T ss_pred cccCCceEEEeccCCCcchHHHhhCcHHHHhCC----------CeEEEEehhHHhhcchHHHHHHHhhccc--ceEEEEe
Confidence 689999999999999999999999999888743 3599999999999999999976656666 7777777
Q ss_pred CCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhh-----hhceeeccCCCCCcccccccCCCCHHHHHH
Q psy7786 84 GGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRR-----NLRILVEGDDVPPACCSFRLMKLPESLVRA 158 (252)
Q Consensus 84 g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~-----~~~~~V~de~~~~~~~~~~~~~l~~~l~~~ 158 (252)
|-...+...+... . .|. .-.++++.+.+.....++. ++.++|.||- +++.+---.+.+--.
T Consensus 297 G~srIk~~~~pv~----~----~t~-~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEi-----HtL~deERG~RLdGL 362 (830)
T COG1202 297 GMSRIKTREEPVV----V----DTS-PDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEI-----HTLEDEERGPRLDGL 362 (830)
T ss_pred chhhhcccCCccc----c----CCC-CCCcEEEeechhHHHHHHcCCcccccceEEeeee-----eeccchhcccchhhH
Confidence 7755544322111 1 110 0146788888888777765 4678888773 333322211211111
Q ss_pred HHHCCCCCChHHHHhhhhhhhcC----------------------CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCC
Q psy7786 159 LEAKGIKKPTPIQVQGIPAALSG----------------------RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL 216 (252)
Q Consensus 159 l~~~~~~~p~~iQ~~~~p~~~~~----------------------~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~ 216 (252)
+.+..+..| ..|...++++..+ ...++.+..++.| ...+..+.+.+.....+
T Consensus 363 I~RLr~l~~-~AQ~i~LSATVgNp~elA~~l~a~lV~y~~RPVplErHlvf~~~e~eK-----~~ii~~L~k~E~~~~ss 436 (830)
T COG1202 363 IGRLRYLFP-GAQFIYLSATVGNPEELAKKLGAKLVLYDERPVPLERHLVFARNESEK-----WDIIARLVKREFSTESS 436 (830)
T ss_pred HHHHHHhCC-CCeEEEEEeecCChHHHHHHhCCeeEeecCCCCChhHeeeeecCchHH-----HHHHHHHHHHHHhhhhc
Confidence 111111011 1222222222211 1245556667777 45555555555555556
Q ss_pred CCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 217 PGEGPYGLIICPSRELARQTHDIIQY 242 (252)
Q Consensus 217 ~~~~~~~LIf~~tr~~a~~i~~~l~~ 242 (252)
.+...|+|||+++|..|+.+++.|..
T Consensus 437 kg~rGQtIVFT~SRrr~h~lA~~L~~ 462 (830)
T COG1202 437 KGYRGQTIVFTYSRRRCHELADALTG 462 (830)
T ss_pred cCcCCceEEEecchhhHHHHHHHhhc
Confidence 67788999999999999999999874
No 75
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.63 E-value=6.9e-16 Score=142.63 Aligned_cols=109 Identities=10% Similarity=0.072 Sum_probs=76.7
Q ss_pred cccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHH-HHHHhCCCCcceee
Q psy7786 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ-YYCAALPIPLRTCL 81 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~-~l~~~~~~~~~~~~ 81 (252)
.+.+++|++++|+||||||.+|.+|+++... ...+++|+.|||++|.|+.+.+. .++...| ..+..
T Consensus 16 ~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~-----------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g--~~VGy 82 (812)
T PRK11664 16 ALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG-----------INGKIIMLEPRRLAARNVAQRLAEQLGEKPG--ETVGY 82 (812)
T ss_pred HHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC-----------cCCeEEEECChHHHHHHHHHHHHHHhCcccC--ceEEE
Confidence 3567899999999999999999999986531 12479999999999999988874 4444444 56666
Q ss_pred eeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 82 AIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
.+++.+...+ ..+|. + .|||++..+..... .+. ++.++|.||.
T Consensus 83 ~vr~~~~~~~------~t~I~--v----~T~G~Llr~l~~d~-~L~-~v~~IIlDEa 125 (812)
T PRK11664 83 RMRAESKVGP------NTRLE--V----VTEGILTRMIQRDP-ELS-GVGLVILDEF 125 (812)
T ss_pred EecCccccCC------CCcEE--E----EChhHHHHHHhhCC-CcC-cCcEEEEcCC
Confidence 6666443221 12231 3 34999877665422 334 4899999996
No 76
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.61 E-value=5.1e-15 Score=129.12 Aligned_cols=106 Identities=35% Similarity=0.483 Sum_probs=93.0
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEE
Q psy7786 144 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG 223 (252)
Q Consensus 144 ~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 223 (252)
.+|.++++++.+++.+...|+..|+++|..++|..+.|+|++++++||+|||++|++|++..+....... .....++++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~-~~~~~~~~~ 86 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPE-DRKVNQPRA 86 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhccccc-ccccCCceE
Confidence 5799999999999999999999999999999999999999999999999999999999999887543210 111345799
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhCCCC
Q psy7786 224 LIICPSRELARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 224 LIf~~tr~~a~~i~~~l~~l~~~~~i~ 250 (252)
||++|||++|.|+++.++.+++..+++
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~ 113 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLK 113 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCce
Confidence 999999999999999999999887653
No 77
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=5.4e-15 Score=131.19 Aligned_cols=101 Identities=38% Similarity=0.584 Sum_probs=89.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEE
Q psy7786 144 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG 223 (252)
Q Consensus 144 ~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 223 (252)
..|.++++++++++.+.+.+|..|++||..++|..+.|+|+++.+.||+|||.+|++|++..+.... . .....+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~-~-----~~~~~a 102 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSV-E-----RKYVSA 102 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhccc-c-----cCCCce
Confidence 5699999999999999999999999999999999999999999999999999999999999866421 0 111129
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhC-CCC
Q psy7786 224 LIICPSRELARQTHDIIQYYCAAL-PIG 250 (252)
Q Consensus 224 LIf~~tr~~a~~i~~~l~~l~~~~-~i~ 250 (252)
||++||||||.|+++.++.++.+. ++.
T Consensus 103 Lil~PTRELA~Qi~~~~~~~~~~~~~~~ 130 (513)
T COG0513 103 LILAPTRELAVQIAEELRKLGKNLGGLR 130 (513)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhcCCcc
Confidence 999999999999999999999987 443
No 78
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.59 E-value=1.6e-14 Score=123.40 Aligned_cols=52 Identities=23% Similarity=0.080 Sum_probs=45.7
Q ss_pred cEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69 (252)
Q Consensus 9 d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l 69 (252)
|+++.||||||||++|.+|++..+... .+.+++|++|||+|+.|+++.++.+
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~---------~~~~ii~v~P~~~L~~q~~~~l~~~ 52 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ---------KADRVIIALPTRATINAMYRRAKEL 52 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC---------CCCeEEEEeehHHHHHHHHHHHHHH
Confidence 689999999999999999999876432 2568999999999999999999886
No 79
>KOG0348|consensus
Probab=99.59 E-value=6.3e-15 Score=125.48 Aligned_cols=103 Identities=40% Similarity=0.594 Sum_probs=92.3
Q ss_pred cccccCCCCHHHHHHHHH-CCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcE
Q psy7786 144 CSFRLMKLPESLVRALEA-KGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPY 222 (252)
Q Consensus 144 ~~~~~~~l~~~l~~~l~~-~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~ 222 (252)
..|..+|+.+.+...+.. +++..||.+|.+++|.++.|+|.++.+.||+|||++|++|+++.+...+.... ...|+.
T Consensus 136 ~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~--Rs~G~~ 213 (708)
T KOG0348|consen 136 AAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQ--RSDGPY 213 (708)
T ss_pred ccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcccc--ccCCce
Confidence 578999999999888854 58999999999999999999999999999999999999999999887665433 566889
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhCC
Q psy7786 223 GLIICPSRELARQTHDIIQYYCAALP 248 (252)
Q Consensus 223 ~LIf~~tr~~a~~i~~~l~~l~~~~~ 248 (252)
+||++||||+|.|+++.++++.+.+.
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~~h 239 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKPFH 239 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcCce
Confidence 99999999999999999999987754
No 80
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.59 E-value=8.2e-15 Score=135.40 Aligned_cols=109 Identities=13% Similarity=0.109 Sum_probs=75.4
Q ss_pred cccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHH-HHHHhCCCCcceee
Q psy7786 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ-YYCAALPIPLRTCL 81 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~-~l~~~~~~~~~~~~ 81 (252)
.+.++.+++++|+||||||.+|.+|+++... .+.+++|+.|||++|.|+.+.+. .++...| ..+..
T Consensus 13 ~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-----------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g--~~VGy 79 (819)
T TIGR01970 13 ALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-----------IGGKIIMLEPRRLAARSAAQRLASQLGEAVG--QTVGY 79 (819)
T ss_pred HHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-----------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcC--cEEEE
Confidence 3567899999999999999999999997652 24589999999999999998774 4444333 44544
Q ss_pred eeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 82 AIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
.+++.+. ..+..+|. + .|||++..+.... ..+. ++.++|.||.
T Consensus 80 ~vr~~~~------~s~~t~I~--v----~T~G~Llr~l~~d-~~L~-~v~~VIiDEa 122 (819)
T TIGR01970 80 RVRGENK------VSRRTRLE--V----VTEGILTRMIQDD-PELD-GVGALIFDEF 122 (819)
T ss_pred EEccccc------cCCCCcEE--E----ECCcHHHHHHhhC-cccc-cCCEEEEecc
Confidence 4444221 12233442 3 3489888665542 2344 4899999996
No 81
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.57 E-value=5.2e-14 Score=119.85 Aligned_cols=69 Identities=19% Similarity=0.290 Sum_probs=53.9
Q ss_pred cccCCCc--EEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCC--CCcc
Q psy7786 3 TYRNSRD--IIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALP--IPLR 78 (252)
Q Consensus 3 ~~~~g~d--~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~--~~~~ 78 (252)
.+.++.+ ++++||||||||++|++|++.. ..++++++||++|++|+++.++.+...++ .++.
T Consensus 8 ~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~--------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~ 73 (357)
T TIGR03158 8 ALQSKDADIIFNTAPTGAGKTLAWLTPLLHG--------------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVN 73 (357)
T ss_pred HHHcCCCCEEEEECCCCCCHHHHHHHHHHHc--------------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCce
Confidence 4566664 7889999999999999999841 23589999999999999999998876542 2356
Q ss_pred eeeeeCC
Q psy7786 79 TCLAIGG 85 (252)
Q Consensus 79 ~~~~~g~ 85 (252)
+....|.
T Consensus 74 v~~~~g~ 80 (357)
T TIGR03158 74 LLHVSKA 80 (357)
T ss_pred EEEecCC
Confidence 6666665
No 82
>KOG0335|consensus
Probab=99.57 E-value=5.7e-15 Score=125.78 Aligned_cols=120 Identities=35% Similarity=0.532 Sum_probs=106.1
Q ss_pred eeeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhc
Q psy7786 132 ILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQET 211 (252)
Q Consensus 132 ~~V~de~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~ 211 (252)
+-+.+.++|.++..|.+..+.+.+...+.+.++..|+++|...+|....|++.+++++||+|||.+|++|++..++++..
T Consensus 62 v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~ 141 (482)
T KOG0335|consen 62 VKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGP 141 (482)
T ss_pred eeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCc
Confidence 33466778888889999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred cCCCCCCC--CcEEEEEcCcHHHHHHHHHHHHHHHhhCCCCC
Q psy7786 212 KLPFLPGE--GPYGLIICPSRELARQTHDIIQYYCAALPIGS 251 (252)
Q Consensus 212 ~~~~~~~~--~~~~LIf~~tr~~a~~i~~~l~~l~~~~~i~~ 251 (252)
..+..... .|+++|++|||++|.|++++.+++.-...+.+
T Consensus 142 ~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~ 183 (482)
T KOG0335|consen 142 EDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKS 183 (482)
T ss_pred ccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhccccccee
Confidence 65554444 59999999999999999999999887665543
No 83
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.57 E-value=2.5e-14 Score=128.55 Aligned_cols=105 Identities=36% Similarity=0.528 Sum_probs=91.9
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEE
Q psy7786 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGL 224 (252)
Q Consensus 145 ~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~L 224 (252)
+|.++++++++++.|.+.++..|+++|..++|..+.|+|++++++||+|||.+|++|++..+...... ......++++|
T Consensus 10 ~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~-~~~~~~~~raL 88 (572)
T PRK04537 10 TFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPAL-ADRKPEDPRAL 88 (572)
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc-cccccCCceEE
Confidence 58999999999999999999999999999999999999999999999999999999999988753211 01122357999
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhCCCC
Q psy7786 225 IICPSRELARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 225 If~~tr~~a~~i~~~l~~l~~~~~i~ 250 (252)
|++|||+||.|+++.+++++..++++
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~ 114 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLR 114 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCce
Confidence 99999999999999999999887754
No 84
>KOG0952|consensus
Probab=99.56 E-value=3.8e-14 Score=128.81 Aligned_cols=124 Identities=21% Similarity=0.209 Sum_probs=86.0
Q ss_pred cccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeee
Q psy7786 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLA 82 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~ 82 (252)
+..+..|.+||||||||||-.|.|.+++.+.... ...-..++..+.+||+|+|+||..+.+.+.+--..+| +++..+
T Consensus 122 aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~-~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~g--i~v~EL 198 (1230)
T KOG0952|consen 122 AYKSNENMLICAPTGSGKTVLAELCILRTIKEHE-EQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPLG--ISVREL 198 (1230)
T ss_pred hhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhc-cccccccCCceEEEEechHHHHHHHHHHHhhhccccc--ceEEEe
Confidence 4567889999999999999999999999887622 2223445688999999999999988776654434444 899999
Q ss_pred eCCcccCcchhhhhhcccccCCccccccCCccccCCChhHH--HHHhhhhceeeccCC
Q psy7786 83 IGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVH--DIIRRNLRILVEGDD 138 (252)
Q Consensus 83 ~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~--~~l~~~~~~~V~de~ 138 (252)
+|++...+.. . ..++| |. |||....-...+.. ..|.+.++.++.||-
T Consensus 199 TGD~ql~~te--i-~~tqi---iV---TTPEKwDvvTRk~~~d~~l~~~V~LviIDEV 247 (1230)
T KOG0952|consen 199 TGDTQLTKTE--I-ADTQI---IV---TTPEKWDVVTRKSVGDSALFSLVRLVIIDEV 247 (1230)
T ss_pred cCcchhhHHH--H-HhcCE---EE---ecccceeeeeeeeccchhhhhheeeEEeeee
Confidence 9996654322 2 23444 33 34655433333322 456666899998883
No 85
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.56 E-value=2.2e-14 Score=126.11 Aligned_cols=104 Identities=38% Similarity=0.596 Sum_probs=90.9
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEE
Q psy7786 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGL 224 (252)
Q Consensus 145 ~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~L 224 (252)
+|.++++++++.+.+.+.++..|+++|..++|..+.++|++++++||+|||.+|++|++..+...... .......++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~--~~~~~~~~aL 79 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPH--AKGRRPVRAL 79 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccc--cccCCCceEE
Confidence 68899999999999999999999999999999999999999999999999999999999987654211 0112235899
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhCCCC
Q psy7786 225 IICPSRELARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 225 If~~tr~~a~~i~~~l~~l~~~~~i~ 250 (252)
|++|||+||.|+.+.++.+.+++++.
T Consensus 80 il~PtreLa~Qi~~~~~~~~~~~~~~ 105 (456)
T PRK10590 80 ILTPTRELAAQIGENVRDYSKYLNIR 105 (456)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCCE
Confidence 99999999999999999998887654
No 86
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=8.4e-15 Score=130.94 Aligned_cols=84 Identities=21% Similarity=0.183 Sum_probs=72.0
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
+|.+++|+ +++++||+|||++|.+|++..... +.+++|++||++||.|.++++..+.+.+| +++.
T Consensus 112 ~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~-----------G~~v~VvTptreLA~qdae~~~~l~~~lG--lsv~ 176 (656)
T PRK12898 112 GLALLSGR--LAEMQTGEGKTLTATLPAGTAALA-----------GLPVHVITVNDYLAERDAELMRPLYEALG--LTVG 176 (656)
T ss_pred HHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc-----------CCeEEEEcCcHHHHHHHHHHHHHHHhhcC--CEEE
Confidence 46788999 999999999999999999976542 66899999999999999999999999988 8999
Q ss_pred eeeCCcccCcchhhhhhcccc
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQY 101 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i 101 (252)
+++||.+. +.+....++||
T Consensus 177 ~i~gg~~~--~~r~~~y~~dI 195 (656)
T PRK12898 177 CVVEDQSP--DERRAAYGADI 195 (656)
T ss_pred EEeCCCCH--HHHHHHcCCCE
Confidence 99999653 34445567777
No 87
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=1.4e-14 Score=132.10 Aligned_cols=115 Identities=18% Similarity=0.188 Sum_probs=86.1
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCL 81 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~ 81 (252)
+.+.+|+ ++.++||+|||++|++|++...+. |.+++|++||++||.|.++.+..+.+.+| +++.+
T Consensus 88 ~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~-----------G~~v~VvTpt~~LA~qd~e~~~~l~~~lG--l~v~~ 152 (790)
T PRK09200 88 LVLHEGN--IAEMQTGEGKTLTATMPLYLNALE-----------GKGVHLITVNDYLAKRDAEEMGQVYEFLG--LTVGL 152 (790)
T ss_pred HHHcCCc--eeeecCCCcchHHHHHHHHHHHHc-----------CCCeEEEeCCHHHHHHHHHHHHHHHhhcC--CeEEE
Confidence 3456776 999999999999999999865553 66799999999999999999999999998 89999
Q ss_pred eeCCcccCcchhhhhhcccccCCccccccCCccc-----cCCC-hhHHHHHhhhhceeeccCC
Q psy7786 82 AIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCI-----LSLP-DQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l-----~~~~-~~~~~~l~~~~~~~V~de~ 138 (252)
.+||.+..++.+. ..++|| +|+||+++ .+.. ........+.++++|.||+
T Consensus 153 i~g~~~~~~~r~~-~y~~dI------vygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEa 208 (790)
T PRK09200 153 NFSDIDDASEKKA-IYEADI------IYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEI 208 (790)
T ss_pred EeCCCCcHHHHHH-hcCCCE------EEECCccccchhHHhccccchhhhcccccceEEEecc
Confidence 9999874333332 345776 45668887 2222 1222233345888888875
No 88
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.54 E-value=6e-14 Score=123.70 Aligned_cols=96 Identities=38% Similarity=0.535 Sum_probs=87.6
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEE
Q psy7786 144 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG 223 (252)
Q Consensus 144 ~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 223 (252)
.+|.++++++++.+.+...|+..|+++|..++|..+.|+|++++++||+|||.+|++|++..+... ...+++
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~--------~~~~~~ 75 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK--------RFRVQA 75 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc--------cCCceE
Confidence 579999999999999999999999999999999999999999999999999999999999876432 125689
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhC
Q psy7786 224 LIICPSRELARQTHDIIQYYCAAL 247 (252)
Q Consensus 224 LIf~~tr~~a~~i~~~l~~l~~~~ 247 (252)
||++|||++|.|+++.+++++...
T Consensus 76 lil~PtreLa~Q~~~~~~~~~~~~ 99 (460)
T PRK11776 76 LVLCPTRELADQVAKEIRRLARFI 99 (460)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999998754
No 89
>KOG0347|consensus
Probab=99.53 E-value=6.8e-15 Score=125.66 Aligned_cols=109 Identities=35% Similarity=0.495 Sum_probs=91.8
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcC-CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCC---CC
Q psy7786 142 ACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSG-RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPF---LP 217 (252)
Q Consensus 142 ~~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~-~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~---~~ 217 (252)
.++.|.++.++.++++.|..+||..|++||..++|+...| .|++..+.||||||++|-+|++..+.......+. ..
T Consensus 179 DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~ 258 (731)
T KOG0347|consen 179 DVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTS 258 (731)
T ss_pred ChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHH
Confidence 3567899999999999999999999999999999999999 8999999999999999999999955532211111 11
Q ss_pred CCCcE--EEEEcCcHHHHHHHHHHHHHHHhhCCCC
Q psy7786 218 GEGPY--GLIICPSRELARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 218 ~~~~~--~LIf~~tr~~a~~i~~~l~~l~~~~~i~ 250 (252)
..+++ +|||+||||+|.|+...+..++++.+++
T Consensus 259 ~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~ 293 (731)
T KOG0347|consen 259 AKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIR 293 (731)
T ss_pred hccCcceeEEecChHHHHHHHHHHHHHhccccCeE
Confidence 23445 9999999999999999999999987764
No 90
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.53 E-value=1.1e-14 Score=131.06 Aligned_cols=112 Identities=16% Similarity=0.224 Sum_probs=84.8
Q ss_pred cccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeee
Q psy7786 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLA 82 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~ 82 (252)
.+.+|+ +++++||+|||++|.+|++...+. +.++.|++||++||.|.++++..+.+.+| +++.++
T Consensus 67 ~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----------G~~V~VvTpt~~LA~qdae~~~~l~~~LG--Lsv~~i 131 (745)
T TIGR00963 67 ALHKGK--IAEMKTGEGKTLTATLPAYLNALT-----------GKGVHVVTVNDYLAQRDAEWMGQVYRFLG--LSVGLI 131 (745)
T ss_pred hhcCCc--eeeecCCCccHHHHHHHHHHHHHh-----------CCCEEEEcCCHHHHHHHHHHHHHHhccCC--CeEEEE
Confidence 455565 999999999999999999644443 33599999999999999999999999998 899999
Q ss_pred eCCcccCcchhhhhhcccccCCccccccCCccc-cCCChhH------HHHHhhhhceeeccCC
Q psy7786 83 IGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCI-LSLPDQV------HDIIRRNLRILVEGDD 138 (252)
Q Consensus 83 ~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l-~~~~~~~------~~~l~~~~~~~V~de~ 138 (252)
+||.+..++.... .+|| +|+||+++ .++.... ...++ .+.++|.||.
T Consensus 132 ~g~~~~~~r~~~y--~~dI------vyGT~~rlgfDyLrd~~~~~~~~~~~r-~l~~aIIDEa 185 (745)
T TIGR00963 132 LSGMSPEERREAY--ACDI------TYGTNNELGFDYLRDNMAHSKEEKVQR-PFHFAIIDEV 185 (745)
T ss_pred eCCCCHHHHHHhc--CCCE------EEECCCchhhHHHhcccccchhhhhcc-ccceeEeecH
Confidence 9997765444333 3566 34668887 5554433 22334 4889998885
No 91
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.52 E-value=1.3e-13 Score=120.84 Aligned_cols=102 Identities=41% Similarity=0.607 Sum_probs=90.9
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEE
Q psy7786 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGL 224 (252)
Q Consensus 145 ~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~L 224 (252)
+|.++++.+.+++.+...|+..|+++|..++|+.+.|+|++++++||+|||.+|++|.+..+..... .....+++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~----~~~~~~~~l 77 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR----RKSGPPRIL 77 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc----cCCCCceEE
Confidence 5889999999999999999999999999999999999999999999999999999999998875321 122356899
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhCCCC
Q psy7786 225 IICPSRELARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 225 If~~tr~~a~~i~~~l~~l~~~~~i~ 250 (252)
|++|||++|.|+++.++.++...+++
T Consensus 78 il~Pt~eLa~Q~~~~~~~l~~~~~~~ 103 (434)
T PRK11192 78 ILTPTRELAMQVADQARELAKHTHLD 103 (434)
T ss_pred EECCcHHHHHHHHHHHHHHHccCCcE
Confidence 99999999999999999999887653
No 92
>KOG0345|consensus
Probab=99.52 E-value=1.3e-13 Score=115.99 Aligned_cols=100 Identities=42% Similarity=0.618 Sum_probs=87.7
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcE
Q psy7786 145 SFRLMK--LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPY 222 (252)
Q Consensus 145 ~~~~~~--l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~ 222 (252)
+|.++. +++++.+.+...||+..|++|..++|..+.++|+.+.++||||||++|++|++..+...+.+.+. ...-
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~---~~vg 81 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPP---GQVG 81 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCc---ccee
Confidence 566655 56999999999999999999999999999999999999999999999999999999776644332 1235
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhC
Q psy7786 223 GLIICPSRELARQTHDIIQYYCAAL 247 (252)
Q Consensus 223 ~LIf~~tr~~a~~i~~~l~~l~~~~ 247 (252)
+||.+||||+|.||.+.+..|.+.+
T Consensus 82 alIIsPTRELa~QI~~V~~~F~~~l 106 (567)
T KOG0345|consen 82 ALIISPTRELARQIREVAQPFLEHL 106 (567)
T ss_pred EEEecCcHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999998874
No 93
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.51 E-value=1.2e-13 Score=125.18 Aligned_cols=96 Identities=38% Similarity=0.615 Sum_probs=88.0
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEE
Q psy7786 144 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG 223 (252)
Q Consensus 144 ~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 223 (252)
.+|.++++++.+++.+.+.|+..|+++|..++|..+.++|++++++||+|||.+|.+|++..+... ...+++
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~--------~~~~~~ 77 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE--------LKAPQI 77 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc--------cCCCeE
Confidence 579999999999999999999999999999999999999999999999999999999999876432 235789
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhC
Q psy7786 224 LIICPSRELARQTHDIIQYYCAAL 247 (252)
Q Consensus 224 LIf~~tr~~a~~i~~~l~~l~~~~ 247 (252)
||+||||++|.|+++.++++...+
T Consensus 78 LIL~PTreLa~Qv~~~l~~~~~~~ 101 (629)
T PRK11634 78 LVLAPTRELAVQVAEAMTDFSKHM 101 (629)
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999998765
No 94
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.51 E-value=1.2e-14 Score=132.65 Aligned_cols=107 Identities=17% Similarity=0.173 Sum_probs=83.3
Q ss_pred EEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCcccCc
Q psy7786 11 IGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQ 90 (252)
Q Consensus 11 ~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~~~~~ 90 (252)
++.++||+|||++|.+|++...+. +..++|++||++||.|.++++..+.+.+| +++.+++||.+...
T Consensus 99 Iaem~TGeGKTL~a~Lpa~~~al~-----------G~~V~VvTpn~yLA~qd~e~m~~l~~~lG--Ltv~~i~gg~~~~~ 165 (896)
T PRK13104 99 IAEMRTGEGKTLVATLPAYLNAIS-----------GRGVHIVTVNDYLAKRDSQWMKPIYEFLG--LTVGVIYPDMSHKE 165 (896)
T ss_pred cccccCCCCchHHHHHHHHHHHhc-----------CCCEEEEcCCHHHHHHHHHHHHHHhcccC--ceEEEEeCCCCHHH
Confidence 789999999999999999977653 33599999999999999999999999998 89999999977766
Q ss_pred chhhhhhcccccCCccccccCCccc-cCCChhH-HH----HHhhhhceeeccCC
Q psy7786 91 SLDVIKKGIQYNDPIKTSWRAPRCI-LSLPDQV-HD----IIRRNLRILVEGDD 138 (252)
Q Consensus 91 ~~~~l~~~~~i~~~i~t~~~~p~~l-~~~~~~~-~~----~l~~~~~~~V~de~ 138 (252)
+.... .+|| +|+||+++ .++.... .. ...+.++++|.||+
T Consensus 166 r~~~y--~~dI------vygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEa 211 (896)
T PRK13104 166 KQEAY--KADI------VYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEV 211 (896)
T ss_pred HHHHh--CCCE------EEECChhhhHHHHhcCCccchHhhhccccceEEeccH
Confidence 54444 4666 35669987 5554433 11 12245889998885
No 95
>KOG0328|consensus
Probab=99.51 E-value=9.8e-15 Score=115.40 Aligned_cols=102 Identities=34% Similarity=0.478 Sum_probs=91.9
Q ss_pred CcccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCC
Q psy7786 141 PACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEG 220 (252)
Q Consensus 141 ~~~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~ 220 (252)
....+|.+||+++++++.+...||+.|+.+|..++|..+.|+|+++++.+|+|||..|.+.++..+.-. ...
T Consensus 24 ~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~--------~r~ 95 (400)
T KOG0328|consen 24 KVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS--------VRE 95 (400)
T ss_pred ccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc--------cce
Confidence 345789999999999999999999999999999999999999999999999999999999888654432 234
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHHHhhCCCC
Q psy7786 221 PYGLIICPSRELARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 221 ~~~LIf~~tr~~a~~i~~~l~~l~~~~~i~ 250 (252)
.|+||+.||||+|.|+.+.+..++.++++.
T Consensus 96 tQ~lilsPTRELa~Qi~~vi~alg~~mnvq 125 (400)
T KOG0328|consen 96 TQALILSPTRELAVQIQKVILALGDYMNVQ 125 (400)
T ss_pred eeEEEecChHHHHHHHHHHHHHhcccccce
Confidence 689999999999999999999999999875
No 96
>KOG0342|consensus
Probab=99.49 E-value=1.2e-13 Score=116.69 Aligned_cols=101 Identities=35% Similarity=0.514 Sum_probs=91.6
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcE
Q psy7786 143 CCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPY 222 (252)
Q Consensus 143 ~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~ 222 (252)
...|.+..+++...+.+.++||...|++|...+|+.+.|+|+++.+.||+|||++|++|.++.+.+.... ..++..
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~----~r~~~~ 156 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFK----PRNGTG 156 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccC----CCCCee
Confidence 3567888999999999999999999999999999999999999999999999999999999988875432 235678
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhC
Q psy7786 223 GLIICPSRELARQTHDIIQYYCAAL 247 (252)
Q Consensus 223 ~LIf~~tr~~a~~i~~~l~~l~~~~ 247 (252)
++|+||||++|.|++.+++++..+-
T Consensus 157 vlIi~PTRELA~Q~~~eak~Ll~~h 181 (543)
T KOG0342|consen 157 VLIICPTRELAMQIFAEAKELLKYH 181 (543)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999998876
No 97
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.49 E-value=3e-13 Score=119.69 Aligned_cols=106 Identities=31% Similarity=0.353 Sum_probs=92.1
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcE
Q psy7786 143 CCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPY 222 (252)
Q Consensus 143 ~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~ 222 (252)
..+|.++++++.+.+.+.+.|+..|+++|..+++..+.|+|+++.++||+|||++|++|++..+...... .......++
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~-~~~~~~~~~ 164 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPP-KERYMGEPR 164 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcc-cccccCCce
Confidence 3579999999999999999999999999999999999999999999999999999999999988754211 001122578
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhCCC
Q psy7786 223 GLIICPSRELARQTHDIIQYYCAALPI 249 (252)
Q Consensus 223 ~LIf~~tr~~a~~i~~~l~~l~~~~~i 249 (252)
+||++|||++|.|+++.++.+.+.+++
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~ 191 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGL 191 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCC
Confidence 999999999999999999999887764
No 98
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.47 E-value=7.8e-14 Score=126.32 Aligned_cols=113 Identities=15% Similarity=0.153 Sum_probs=79.9
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCc
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGV 86 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~ 86 (252)
++..+++++||+|||++|++|++...+. +..++|++||++||.|..+++..+.+.+| +++.+++++.
T Consensus 83 ~~G~Iaem~TGeGKTLta~Lpa~l~aL~-----------g~~V~VVTpn~yLA~Rdae~m~~l~~~LG--Lsv~~~~~~s 149 (762)
T TIGR03714 83 HQGNIAEMKTGEGKTLTATMPLYLNALT-----------GKGAMLVTTNDYLAKRDAEEMGPVYEWLG--LTVSLGVVDD 149 (762)
T ss_pred cCCceeEecCCcchHHHHHHHHHHHhhc-----------CCceEEeCCCHHHHHHHHHHHHHHHhhcC--CcEEEEECCC
Confidence 3346999999999999999998766543 34699999999999999999999999998 7777777763
Q ss_pred ccC---cchhhhhhcccccCCccccccCCcccc-CCChh-----HHHHHhhhhceeeccCC
Q psy7786 87 PMN---QSLDVIKKGIQYNDPIKTSWRAPRCIL-SLPDQ-----VHDIIRRNLRILVEGDD 138 (252)
Q Consensus 87 ~~~---~~~~~l~~~~~i~~~i~t~~~~p~~l~-~~~~~-----~~~~l~~~~~~~V~de~ 138 (252)
... ...+....++|| +|+||+++. +.... .+....+.+.++|.||+
T Consensus 150 ~~~~~~~~~rr~~y~~dI------vygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEa 204 (762)
T TIGR03714 150 PDEEYDANEKRKIYNSDI------VYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEV 204 (762)
T ss_pred CccccCHHHHHHhCCCCE------EEECchhhhhhHHHHHhhcchhhcccccCcEEEEecH
Confidence 322 222333346777 345688882 32211 11222334889998885
No 99
>KOG0343|consensus
Probab=99.44 E-value=2.5e-13 Score=116.35 Aligned_cols=101 Identities=37% Similarity=0.529 Sum_probs=91.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEE
Q psy7786 144 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG 223 (252)
Q Consensus 144 ~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 223 (252)
..|.++.++..+.+.|...+|-.++.+|..++|..+.|+|++..+.||+|||++|++|++..++... -....|.-+
T Consensus 69 ~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~k----Ws~~DGlGa 144 (758)
T KOG0343|consen 69 KKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLK----WSPTDGLGA 144 (758)
T ss_pred hhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcC----CCCCCCcee
Confidence 6899999999999999999999999999999999999999999999999999999999999887642 233446679
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhCC
Q psy7786 224 LIICPSRELARQTHDIIQYYCAALP 248 (252)
Q Consensus 224 LIf~~tr~~a~~i~~~l~~l~~~~~ 248 (252)
||..|||++|.|+++.|++.|++-.
T Consensus 145 lIISPTRELA~QtFevL~kvgk~h~ 169 (758)
T KOG0343|consen 145 LIISPTRELALQTFEVLNKVGKHHD 169 (758)
T ss_pred EEecchHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999998754
No 100
>KOG0344|consensus
Probab=99.44 E-value=5.4e-13 Score=114.97 Aligned_cols=117 Identities=39% Similarity=0.548 Sum_probs=104.3
Q ss_pred HHhhhhceeeccCCCCCccccccc----CCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHH
Q psy7786 125 IIRRNLRILVEGDDVPPACCSFRL----MKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVL 200 (252)
Q Consensus 125 ~l~~~~~~~V~de~~~~~~~~~~~----~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~ 200 (252)
..++..++-|.|.+++.++.+|.+ ..+...+++.+...+|..|+++|.+++|..+.+++++.|++||+|||++|.+
T Consensus 113 ~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~ 192 (593)
T KOG0344|consen 113 GIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNL 192 (593)
T ss_pred cchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhh
Confidence 456667899999999999999987 5689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 201 PILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 201 ~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
|++.++..... -....+.+++|+.|||++|.|++.+++++.
T Consensus 193 Pil~~L~~~~~---~~~~~gl~a~Il~ptreLa~Qi~re~~k~~ 233 (593)
T KOG0344|consen 193 PILQHLKDLSQ---EKHKVGLRALILSPTRELAAQIYREMRKYS 233 (593)
T ss_pred HHHHHHHHhhc---ccCccceEEEEecchHHHHHHHHHHHHhcC
Confidence 99998876542 122446799999999999999999999887
No 101
>KOG0326|consensus
Probab=99.42 E-value=6.1e-14 Score=112.73 Aligned_cols=99 Identities=35% Similarity=0.519 Sum_probs=91.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEE
Q psy7786 144 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG 223 (252)
Q Consensus 144 ~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 223 (252)
..|++..+..+++..+.+.||+.|+++|...+|..+.|+|+++.+..|+|||.+|++|+++++.... ..-|+
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~--------~~IQ~ 156 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKK--------NVIQA 156 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccc--------cceeE
Confidence 4699999999999999999999999999999999999999999999999999999999998775432 35689
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhCCCC
Q psy7786 224 LIICPSRELARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 224 LIf~~tr~~a~~i~~~l~~l~~~~~i~ 250 (252)
+|++||||+|-|....++++++.++++
T Consensus 157 ~ilVPtrelALQtSqvc~~lskh~~i~ 183 (459)
T KOG0326|consen 157 IILVPTRELALQTSQVCKELSKHLGIK 183 (459)
T ss_pred EEEeecchhhHHHHHHHHHHhcccCeE
Confidence 999999999999999999999999875
No 102
>PTZ00424 helicase 45; Provisional
Probab=99.42 E-value=1.5e-12 Score=112.88 Aligned_cols=98 Identities=37% Similarity=0.532 Sum_probs=88.2
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEE
Q psy7786 144 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG 223 (252)
Q Consensus 144 ~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 223 (252)
.+|.++++++.+.+.+.+.++..|+++|..+++..+.++|.+++++||+|||.+|+++.+..+... ..+.++
T Consensus 28 ~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~--------~~~~~~ 99 (401)
T PTZ00424 28 DSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD--------LNACQA 99 (401)
T ss_pred CCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC--------CCCceE
Confidence 579999999999999999999999999999999999999999999999999999999998765321 235689
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhCCC
Q psy7786 224 LIICPSRELARQTHDIIQYYCAALPI 249 (252)
Q Consensus 224 LIf~~tr~~a~~i~~~l~~l~~~~~i 249 (252)
||++|||++|.|+.+.+++++..+++
T Consensus 100 lil~Pt~~L~~Q~~~~~~~~~~~~~~ 125 (401)
T PTZ00424 100 LILAPTRELAQQIQKVVLALGDYLKV 125 (401)
T ss_pred EEECCCHHHHHHHHHHHHHHhhhcCc
Confidence 99999999999999999999877654
No 103
>KOG0337|consensus
Probab=99.41 E-value=5.6e-13 Score=110.78 Aligned_cols=100 Identities=38% Similarity=0.606 Sum_probs=93.1
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEE
Q psy7786 144 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG 223 (252)
Q Consensus 144 ~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 223 (252)
.+|+.||++..+.+.+.+.|+..|+++|+.++|..+.++|++..+.+|+|||.+|++|+++++.... ..+.++
T Consensus 21 g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-------~~g~Ra 93 (529)
T KOG0337|consen 21 GGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-------QTGLRA 93 (529)
T ss_pred CCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-------ccccce
Confidence 6899999999999999999999999999999999999999999999999999999999999887754 236799
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhCCCC
Q psy7786 224 LIICPSRELARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 224 LIf~~tr~~a~~i~~~l~~l~~~~~i~ 250 (252)
+|..|||++|.|..+.++.++...++.
T Consensus 94 lilsptreLa~qtlkvvkdlgrgt~lr 120 (529)
T KOG0337|consen 94 LILSPTRELALQTLKVVKDLGRGTKLR 120 (529)
T ss_pred eeccCcHHHHHHHHHHHHHhccccchh
Confidence 999999999999999999999977654
No 104
>KOG0336|consensus
Probab=99.36 E-value=1.2e-12 Score=108.59 Aligned_cols=103 Identities=37% Similarity=0.619 Sum_probs=90.0
Q ss_pred CCCcccccccC-CCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCC
Q psy7786 139 VPPACCSFRLM-KLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP 217 (252)
Q Consensus 139 ~~~~~~~~~~~-~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~ 217 (252)
+|+|..+|.+. ..-+++++.+.+.||..|++||+++||.++.|.|++..+.||+|||++|+.|-+.++..+.... ..
T Consensus 214 IPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~--~q 291 (629)
T KOG0336|consen 214 IPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRR--EQ 291 (629)
T ss_pred CCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhh--hc
Confidence 78888899875 6788999999999999999999999999999999999999999999999999988777654322 34
Q ss_pred CCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 218 GEGPYGLIICPSRELARQTHDIIQYY 243 (252)
Q Consensus 218 ~~~~~~LIf~~tr~~a~~i~~~l~~l 243 (252)
..++.+|+++|||+||.|+.-+..+.
T Consensus 292 r~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 292 RNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred cCCCceEEEeccHHHHHHHHhHHhHh
Confidence 56789999999999999998876543
No 105
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.35 E-value=2.9e-12 Score=114.87 Aligned_cols=80 Identities=23% Similarity=0.222 Sum_probs=68.0
Q ss_pred cccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH-HhCCCCcceee
Q psy7786 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC-AALPIPLRTCL 81 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~-~~~~~~~~~~~ 81 (252)
.+.+++.+++.|+||||||+||++|++..+... .+.++||++||++|+.|+.+.+..+. +.++.++++..
T Consensus 12 al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~---------~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~ 82 (636)
T TIGR03117 12 SLRQKRIGMLEASTGVGKTLAMIMAALTMLKER---------PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGF 82 (636)
T ss_pred HHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc---------cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEE
Confidence 356788999999999999999999999877532 14579999999999999999999998 67766789999
Q ss_pred eeCCcccCcc
Q psy7786 82 AIGGVPMNQS 91 (252)
Q Consensus 82 ~~g~~~~~~~ 91 (252)
+.|+.++-..
T Consensus 83 lkGr~nYlCl 92 (636)
T TIGR03117 83 FPGSQEFVSP 92 (636)
T ss_pred EECCcccccH
Confidence 9999887433
No 106
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.34 E-value=8.8e-12 Score=115.15 Aligned_cols=86 Identities=28% Similarity=0.391 Sum_probs=80.2
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCc
Q psy7786 150 KLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPS 229 (252)
Q Consensus 150 ~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~t 229 (252)
.+++.+.+.+.+.|+..|+++|..++|..+.|+|+++.++||+|||++|.+|++..+... .+.++||++||
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~---------~~~~aL~l~Pt 90 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD---------PRATALYLAPT 90 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC---------CCcEEEEEcCh
Confidence 488999999999999999999999999999999999999999999999999999988653 25689999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy7786 230 RELARQTHDIIQYYC 244 (252)
Q Consensus 230 r~~a~~i~~~l~~l~ 244 (252)
|+||.|+.+.+++++
T Consensus 91 raLa~q~~~~l~~l~ 105 (742)
T TIGR03817 91 KALAADQLRAVRELT 105 (742)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999886
No 107
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.33 E-value=2.5e-11 Score=95.40 Aligned_cols=98 Identities=43% Similarity=0.656 Sum_probs=87.1
Q ss_pred cccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEE
Q psy7786 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLI 225 (252)
Q Consensus 146 ~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LI 225 (252)
|.++++++.+.+.+.+.++..|++.|..+++....++++++.++||+|||..++++++..+.... ...+++++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~------~~~~~~vii 74 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP------KKDGPQALI 74 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc------ccCCceEEE
Confidence 56788999999999999999999999999999999999999999999999999999998877652 124678999
Q ss_pred EcCcHHHHHHHHHHHHHHHhhCCC
Q psy7786 226 ICPSRELARQTHDIIQYYCAALPI 249 (252)
Q Consensus 226 f~~tr~~a~~i~~~l~~l~~~~~i 249 (252)
++||++++.|+...++++....++
T Consensus 75 i~p~~~L~~q~~~~~~~~~~~~~~ 98 (203)
T cd00268 75 LAPTRELALQIAEVARKLGKHTNL 98 (203)
T ss_pred EcCCHHHHHHHHHHHHHHhccCCc
Confidence 999999999999999988765443
No 108
>KOG0329|consensus
Probab=99.29 E-value=4.7e-12 Score=99.11 Aligned_cols=97 Identities=33% Similarity=0.462 Sum_probs=87.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEE
Q psy7786 144 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG 223 (252)
Q Consensus 144 ~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 223 (252)
..|.+..+.+++++++-..||++|+.+|..++|...-|-|+++++.+|.|||..|.+..++.+-.. .+...+
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv--------~g~vsv 113 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV--------DGQVSV 113 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC--------CCeEEE
Confidence 468999999999999999999999999999999999999999999999999999999988754322 123568
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhCC
Q psy7786 224 LIICPSRELARQTHDIIQYYCAALP 248 (252)
Q Consensus 224 LIf~~tr~~a~~i~~~l~~l~~~~~ 248 (252)
+++|+||++|.||.++..+++++++
T Consensus 114 lvmchtrelafqi~~ey~rfskymP 138 (387)
T KOG0329|consen 114 LVMCHTRELAFQISKEYERFSKYMP 138 (387)
T ss_pred EEEeccHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999987
No 109
>KOG0332|consensus
Probab=99.28 E-value=4e-12 Score=104.28 Aligned_cols=101 Identities=29% Similarity=0.422 Sum_probs=91.1
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcC--CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCC
Q psy7786 142 ACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSG--RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGE 219 (252)
Q Consensus 142 ~~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~--~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~ 219 (252)
...+|.++++.+++++.+..++|..|+.||..++|.++.. ++++.++.+|+|||.+|.+.++.++.-. ..
T Consensus 88 S~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~--------~~ 159 (477)
T KOG0332|consen 88 SAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD--------VV 159 (477)
T ss_pred ccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc--------cc
Confidence 4578999999999999999999999999999999998865 7999999999999999999999876543 34
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHHhhCCCC
Q psy7786 220 GPYGLIICPSRELARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 220 ~~~~LIf~~tr~~a~~i~~~l~~l~~~~~i~ 250 (252)
.|+++.++|||++|.|+.+.+.+.|++.++.
T Consensus 160 ~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~it 190 (477)
T KOG0332|consen 160 VPQCICLAPTRELAPQTGEVVEEMGKFTELT 190 (477)
T ss_pred CCCceeeCchHHHHHHHHHHHHHhcCceeee
Confidence 6899999999999999999999999987653
No 110
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.28 E-value=1.1e-11 Score=115.49 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=63.2
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHH-HHHHHHHHHhCCCCcceeee
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT-HDIIQYYCAALPIPLRTCLA 82 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~-~~~~~~l~~~~~~~~~~~~~ 82 (252)
+.+|++++++|+||||||+||++|+++.. .+.+++|++|||+|+.|+ .+.+..+++.++ +++..+
T Consensus 261 l~~~~~~~~eA~tGtGKT~ayllp~l~~~------------~~~~vvI~t~T~~Lq~Ql~~~~i~~l~~~~~--~~~~~~ 326 (820)
T PRK07246 261 FHDGPASFIEAQTGIGKTYGYLLPLLAQS------------DQRQIIVSVPTKILQDQIMAEEVKAIQEVFH--IDCHSL 326 (820)
T ss_pred HhCCCcEEEECCCCCcHHHHHHHHHHHhc------------CCCcEEEEeCcHHHHHHHHHHHHHHHHHhcC--CcEEEE
Confidence 45788999999999999999999988643 246799999999999999 688999999887 777889
Q ss_pred eCCcccCcc
Q psy7786 83 IGGVPMNQS 91 (252)
Q Consensus 83 ~g~~~~~~~ 91 (252)
.|+.++-..
T Consensus 327 kg~~~ylcl 335 (820)
T PRK07246 327 KGPQNYLKL 335 (820)
T ss_pred ECCcccccH
Confidence 999887433
No 111
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.27 E-value=5.6e-12 Score=115.23 Aligned_cols=111 Identities=17% Similarity=0.237 Sum_probs=83.5
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeC
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIG 84 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g 84 (252)
.+|+ ++.++||+|||+++.+|++-..+. +-++-|++||.+||.|.++.+..+.+.+| +++.+++|
T Consensus 94 ~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----------G~~V~IvTpn~yLA~rd~e~~~~l~~~LG--lsv~~i~~ 158 (830)
T PRK12904 94 HEGK--IAEMKTGEGKTLVATLPAYLNALT-----------GKGVHVVTVNDYLAKRDAEWMGPLYEFLG--LSVGVILS 158 (830)
T ss_pred cCCc--hhhhhcCCCcHHHHHHHHHHHHHc-----------CCCEEEEecCHHHHHHHHHHHHHHHhhcC--CeEEEEcC
Confidence 3454 889999999999999999643332 22466999999999999999999999998 89999999
Q ss_pred CcccCcchhhhhhcccccCCccccccCCccc-cCCChhHH-----HHHhhhhceeeccCC
Q psy7786 85 GVPMNQSLDVIKKGIQYNDPIKTSWRAPRCI-LSLPDQVH-----DIIRRNLRILVEGDD 138 (252)
Q Consensus 85 ~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l-~~~~~~~~-----~~l~~~~~~~V~de~ 138 (252)
+.+.+++..... +|| +|+||+++ .++..... ....+.+.++|.||+
T Consensus 159 ~~~~~er~~~y~--~dI------~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEa 210 (830)
T PRK12904 159 GMSPEERREAYA--ADI------TYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEV 210 (830)
T ss_pred CCCHHHHHHhcC--CCe------EEECCcchhhhhhhcccccchhhhcccccceEEEech
Confidence 988877666543 666 45668888 55554332 122344788888875
No 112
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.26 E-value=1.9e-11 Score=112.05 Aligned_cols=106 Identities=17% Similarity=0.250 Sum_probs=73.7
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCc
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGV 86 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~ 86 (252)
++++++.++||||||.+|+.++.+.+.. +.++||++||++|+.|+.+.+++. ++ .++..++|+.
T Consensus 162 ~~~~Ll~~~TGSGKT~v~l~~i~~~l~~-----------g~~vLvLvPt~~L~~Q~~~~l~~~---fg--~~v~~~~s~~ 225 (679)
T PRK05580 162 FSPFLLDGVTGSGKTEVYLQAIAEVLAQ-----------GKQALVLVPEIALTPQMLARFRAR---FG--APVAVLHSGL 225 (679)
T ss_pred CCcEEEECCCCChHHHHHHHHHHHHHHc-----------CCeEEEEeCcHHHHHHHHHHHHHH---hC--CCEEEEECCC
Confidence 5789999999999999999887766532 457999999999999999888753 35 6788899998
Q ss_pred ccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 87 PMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 87 ~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
+..++.+...+-.. +.+..++.++......+.+ +.++|.||+
T Consensus 226 s~~~r~~~~~~~~~---------g~~~IVVgTrsal~~p~~~-l~liVvDEe 267 (679)
T PRK05580 226 SDGERLDEWRKAKR---------GEAKVVIGARSALFLPFKN-LGLIIVDEE 267 (679)
T ss_pred CHHHHHHHHHHHHc---------CCCCEEEeccHHhcccccC-CCEEEEECC
Confidence 77665544332000 1123344444333333444 788887775
No 113
>KOG0327|consensus
Probab=99.25 E-value=5.1e-12 Score=104.00 Aligned_cols=99 Identities=34% Similarity=0.518 Sum_probs=89.8
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEE
Q psy7786 144 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG 223 (252)
Q Consensus 144 ~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 223 (252)
++|.+|++.+.+++.+...||+.|+.||..++.+...|.|+..++.+|+|||.+|.++.++.+--. ....++
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~--------~ke~qa 97 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS--------VKETQA 97 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc--------hHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999876322 224679
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhCCCC
Q psy7786 224 LIICPSRELARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 224 LIf~~tr~~a~~i~~~l~~l~~~~~i~ 250 (252)
|+++|||++|.|+.+..+.++..++++
T Consensus 98 lilaPtreLa~qi~~v~~~lg~~~~~~ 124 (397)
T KOG0327|consen 98 LILAPTRELAQQIQKVVRALGDHMDVS 124 (397)
T ss_pred HHhcchHHHHHHHHHHHHhhhccccee
Confidence 999999999999999999999888654
No 114
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.19 E-value=3.6e-11 Score=110.06 Aligned_cols=107 Identities=19% Similarity=0.209 Sum_probs=80.6
Q ss_pred EEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCcccCc
Q psy7786 11 IGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQ 90 (252)
Q Consensus 11 ~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~~~~~ 90 (252)
++.++||+|||++|.+|++.+.+. +..+.|++|+++||.|..+++..+.+.+| +++.++.|+.+..+
T Consensus 99 IaEm~TGEGKTL~a~lp~~l~al~-----------g~~VhIvT~ndyLA~RD~e~m~~l~~~lG--lsv~~i~~~~~~~~ 165 (908)
T PRK13107 99 IAEMRTGEGKTLTATLPAYLNALT-----------GKGVHVITVNDYLARRDAENNRPLFEFLG--LTVGINVAGLGQQE 165 (908)
T ss_pred cccccCCCCchHHHHHHHHHHHhc-----------CCCEEEEeCCHHHHHHHHHHHHHHHHhcC--CeEEEecCCCCHHH
Confidence 789999999999999999977754 33499999999999999999999999998 89998899876532
Q ss_pred chhhhhhcccccCCccccccCCccc-cCCChhH-----HHHHhhhhceeeccCC
Q psy7786 91 SLDVIKKGIQYNDPIKTSWRAPRCI-LSLPDQV-----HDIIRRNLRILVEGDD 138 (252)
Q Consensus 91 ~~~~l~~~~~i~~~i~t~~~~p~~l-~~~~~~~-----~~~l~~~~~~~V~de~ 138 (252)
+... -.+|| .|+||+.+ .++.... .....+.+.+.|.||.
T Consensus 166 r~~~--Y~~dI------~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEv 211 (908)
T PRK13107 166 KKAA--YNADI------TYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEV 211 (908)
T ss_pred HHhc--CCCCe------EEeCCCcccchhhhccCccchhhhhccccceeeecch
Confidence 2211 14676 46678887 5554332 1222345778887775
No 115
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.19 E-value=1.7e-10 Score=101.87 Aligned_cols=127 Identities=16% Similarity=0.239 Sum_probs=87.7
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
|..+++|+|+++.-|||.||+++|.+|.+-. .| -+|||+|..+|..++.+.++.. | +++.
T Consensus 26 I~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-------------~G-~TLVVSPLiSLM~DQV~~l~~~----G--i~A~ 85 (590)
T COG0514 26 IDALLSGKDTLVVMPTGGGKSLCYQIPALLL-------------EG-LTLVVSPLISLMKDQVDQLEAA----G--IRAA 85 (590)
T ss_pred HHHHHcCCcEEEEccCCCCcchHhhhHHHhc-------------CC-CEEEECchHHHHHHHHHHHHHc----C--ceee
Confidence 3467899999999999999999999998732 13 3899999999999888877654 3 7777
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCC--CCHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMK--LPESL 155 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~--l~~~l 155 (252)
.+.+.-+.+++...+.+-..-. +..+|-.|.++..-.-..... ...+..+|.||+ +=..+.| |.++-
T Consensus 86 ~lnS~l~~~e~~~v~~~l~~g~--~klLyisPErl~~~~f~~~L~-~~~i~l~vIDEA-----HCiSqWGhdFRP~Y 154 (590)
T COG0514 86 YLNSTLSREERQQVLNQLKSGQ--LKLLYISPERLMSPRFLELLK-RLPISLVAIDEA-----HCISQWGHDFRPDY 154 (590)
T ss_pred hhhcccCHHHHHHHHHHHhcCc--eeEEEECchhhcChHHHHHHH-hCCCceEEechH-----HHHhhcCCccCHhH
Confidence 7777777777766655422210 222455688887653222222 445778889987 3344554 66665
No 116
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.17 E-value=7.4e-11 Score=111.07 Aligned_cols=75 Identities=24% Similarity=0.270 Sum_probs=64.1
Q ss_pred cccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHH-HHHHHHHHhCCCCcceee
Q psy7786 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH-DIIQYYCAALPIPLRTCL 81 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~-~~~~~l~~~~~~~~~~~~ 81 (252)
.+.+|+++++.||||+|||+||++|++.... . +.+++|.+||++|+.|+. +.+..+.+.++.++++..
T Consensus 260 ~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~----------~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~~~~~~~~~ 328 (850)
T TIGR01407 260 QLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-T----------EKPVVISTNTKVLQSQLLEKDIPLLNEILNFKINAAL 328 (850)
T ss_pred HhccCCcEEEECCCCCchhHHHHHHHHHHhc-C----------CCeEEEEeCcHHHHHHHHHHHHHHHHHHcCCCceEEE
Confidence 4568999999999999999999999987654 1 336999999999999985 578888888877789999
Q ss_pred eeCCccc
Q psy7786 82 AIGGVPM 88 (252)
Q Consensus 82 ~~g~~~~ 88 (252)
+.|+.++
T Consensus 329 ~kG~~~y 335 (850)
T TIGR01407 329 IKGKSNY 335 (850)
T ss_pred EEcchhh
Confidence 9999877
No 117
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.17 E-value=4.9e-11 Score=106.09 Aligned_cols=108 Identities=16% Similarity=0.122 Sum_probs=70.4
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCL 81 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~ 81 (252)
+.++++++.++++|||||||+.+.. +...+... ...++||++||+||+.|..+.+++++.... ..+..
T Consensus 124 ~~~l~~~~~il~apTGsGKT~i~~~-l~~~~~~~---------~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~--~~~~~ 191 (501)
T PHA02558 124 YEGLKNNRRLLNLPTSAGKSLIQYL-LSRYYLEN---------YEGKVLIIVPTTSLVTQMIDDFVDYRLFPR--EAMHK 191 (501)
T ss_pred HHHHhcCceEEEeCCCCCHHHHHHH-HHHHHHhc---------CCCeEEEEECcHHHHHHHHHHHHHhccccc--cceeE
Confidence 3456788999999999999987643 22222221 134899999999999999999998765432 34445
Q ss_pred eeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 82 AIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
+.||.... .+.+|. |. +|+++...+.. .+. .+.++|.||+
T Consensus 192 i~~g~~~~-------~~~~I~--Va----T~qsl~~~~~~---~~~-~~~~iIvDEa 231 (501)
T PHA02558 192 IYSGTAKD-------TDAPIV--VS----TWQSAVKQPKE---WFD-QFGMVIVDEC 231 (501)
T ss_pred EecCcccC-------CCCCEE--Ee----eHHHHhhchhh---hcc-ccCEEEEEch
Confidence 56664322 123332 33 37777654422 233 4889999996
No 118
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.13 E-value=3.1e-10 Score=96.88 Aligned_cols=112 Identities=15% Similarity=0.139 Sum_probs=79.5
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCc
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGV 86 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~ 86 (252)
.+|.+++.|||-|||...++-+..++.... + ++|+++||+-|+.|....+++....-+ -.++.++|.+
T Consensus 29 ~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~---------~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~--~~i~~ltGev 96 (542)
T COG1111 29 FKNTLVVLPTGLGKTFIAAMVIANRLRWFG---------G-KVLFLAPTKPLVLQHAEFCRKVTGIPE--DEIAALTGEV 96 (542)
T ss_pred hcCeEEEecCCccHHHHHHHHHHHHHHhcC---------C-eEEEecCCchHHHHHHHHHHHHhCCCh--hheeeecCCC
Confidence 359999999999999988888887776543 4 799999999999999999988764322 4677899999
Q ss_pred ccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 87 PMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 87 ~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
+.+++.....++--+ ++| |..+.+=......++.. +..+|-||+
T Consensus 97 ~p~~R~~~w~~~kVf---vaT----PQvveNDl~~Grid~~d-v~~lifDEA 140 (542)
T COG1111 97 RPEEREELWAKKKVF---VAT----PQVVENDLKAGRIDLDD-VSLLIFDEA 140 (542)
T ss_pred ChHHHHHHHhhCCEE---Eec----cHHHHhHHhcCccChHH-ceEEEechh
Confidence 988777666654322 333 55544433333333443 556666665
No 119
>KOG0951|consensus
Probab=99.09 E-value=1.1e-09 Score=101.93 Aligned_cols=82 Identities=22% Similarity=0.130 Sum_probs=62.1
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeC
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIG 84 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g 84 (252)
....++++|||||+|||...++.+++.+-.........+-...+.+|++|.++|+..+-..+.+--...| +++.-.+|
T Consensus 323 ~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~G--I~V~ElTg 400 (1674)
T KOG0951|consen 323 RGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLG--ITVLELTG 400 (1674)
T ss_pred cCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccC--cEEEEecc
Confidence 3455899999999999999999999998765442222333466899999999999887665554444445 89999999
Q ss_pred Cccc
Q psy7786 85 GVPM 88 (252)
Q Consensus 85 ~~~~ 88 (252)
+...
T Consensus 401 D~~l 404 (1674)
T KOG0951|consen 401 DSQL 404 (1674)
T ss_pred cccc
Confidence 8554
No 120
>PRK02362 ski2-like helicase; Provisional
Probab=99.09 E-value=5.3e-10 Score=103.98 Aligned_cols=90 Identities=30% Similarity=0.454 Sum_probs=81.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHhhhhh-hhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEE
Q psy7786 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA-ALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG 223 (252)
Q Consensus 145 ~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~-~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 223 (252)
.|.++++++.+.+.+...|+..++++|..+++. ...|++++++++||+|||.++.++++..+.. +.++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~-----------~~ka 70 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR-----------GGKA 70 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc-----------CCcE
Confidence 477889999999999999999999999999988 6789999999999999999999999987642 4579
Q ss_pred EEEcCcHHHHHHHHHHHHHHHh
Q psy7786 224 LIICPSRELARQTHDIIQYYCA 245 (252)
Q Consensus 224 LIf~~tr~~a~~i~~~l~~l~~ 245 (252)
++++|+|++|.|.++.++++++
T Consensus 71 l~i~P~raLa~q~~~~~~~~~~ 92 (737)
T PRK02362 71 LYIVPLRALASEKFEEFERFEE 92 (737)
T ss_pred EEEeChHHHHHHHHHHHHHhhc
Confidence 9999999999999999998753
No 121
>PRK13766 Hef nuclease; Provisional
Probab=99.06 E-value=3.8e-10 Score=105.76 Aligned_cols=111 Identities=16% Similarity=0.213 Sum_probs=73.7
Q ss_pred CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCcc
Q psy7786 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVP 87 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~~ 87 (252)
+|+++++|||+|||..+++++...+. . .+.++||++||++|+.|..+.++++....+ .++..++|+.+
T Consensus 30 ~n~lv~~ptG~GKT~~a~~~i~~~l~-~---------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~--~~v~~~~g~~~ 97 (773)
T PRK13766 30 KNTLVVLPTGLGKTAIALLVIAERLH-K---------KGGKVLILAPTKPLVEQHAEFFRKFLNIPE--EKIVVFTGEVS 97 (773)
T ss_pred CCeEEEcCCCccHHHHHHHHHHHHHH-h---------CCCeEEEEeCcHHHHHHHHHHHHHHhCCCC--ceEEEEeCCCC
Confidence 39999999999999999999988762 1 245799999999999999999888754322 46777888876
Q ss_pred cCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 88 MNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 88 ~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
..++.+ +....++. + ++|..+..........+. .+.++|.||+
T Consensus 98 ~~~r~~-~~~~~~ii--v----~T~~~l~~~l~~~~~~~~-~~~liVvDEa 140 (773)
T PRK13766 98 PEKRAE-LWEKAKVI--V----ATPQVIENDLIAGRISLE-DVSLLIFDEA 140 (773)
T ss_pred HHHHHH-HHhCCCEE--E----ECHHHHHHHHHcCCCChh-hCcEEEEECC
Confidence 654333 33333431 2 235544322111111222 3778888886
No 122
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.04 E-value=1.6e-09 Score=99.36 Aligned_cols=80 Identities=21% Similarity=0.328 Sum_probs=57.1
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCC-CCcceeee
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALP-IPLRTCLA 82 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~-~~~~~~~~ 82 (252)
+..|+++-+.||||.||| +|.+-+--.+.. .+-+++||+||+-|+.|+++.++++++..+ ..+++. .
T Consensus 94 ~~rg~SFaiiAPTGvGKT-Tfg~~~sl~~a~----------kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-y 161 (1187)
T COG1110 94 LVRGKSFAIIAPTGVGKT-TFGLLMSLYLAK----------KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-Y 161 (1187)
T ss_pred HHcCCceEEEcCCCCchh-HHHHHHHHHHHh----------cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-e
Confidence 578999999999999999 444433322222 245799999999999999999999998777 334443 5
Q ss_pred eCCcccCcchhhh
Q psy7786 83 IGGVPMNQSLDVI 95 (252)
Q Consensus 83 ~g~~~~~~~~~~l 95 (252)
+|..+.++....+
T Consensus 162 h~~l~~~ekee~l 174 (1187)
T COG1110 162 HSALPTKEKEEAL 174 (1187)
T ss_pred ccccchHHHHHHH
Confidence 5654554433333
No 123
>PRK00254 ski2-like helicase; Provisional
Probab=99.04 E-value=1.4e-09 Score=101.02 Aligned_cols=90 Identities=23% Similarity=0.371 Sum_probs=81.3
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHhhhhh-hhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEE
Q psy7786 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA-ALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG 223 (252)
Q Consensus 145 ~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~-~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 223 (252)
+|.++++++.+.+.+.+.|+..|+++|..+++. ...|+|++++++||+|||.++.++++..+... +.++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~----------~~~~ 71 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE----------GGKA 71 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc----------CCeE
Confidence 467888999999999999999999999999986 78999999999999999999999999876542 4589
Q ss_pred EEEcCcHHHHHHHHHHHHHHH
Q psy7786 224 LIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 224 LIf~~tr~~a~~i~~~l~~l~ 244 (252)
|+++|+|++|.|.++.++++.
T Consensus 72 l~l~P~~aLa~q~~~~~~~~~ 92 (720)
T PRK00254 72 VYLVPLKALAEEKYREFKDWE 92 (720)
T ss_pred EEEeChHHHHHHHHHHHHHHh
Confidence 999999999999999998764
No 124
>KOG0352|consensus
Probab=99.02 E-value=1.1e-09 Score=91.88 Aligned_cols=115 Identities=19% Similarity=0.225 Sum_probs=70.5
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeee
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAI 83 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~ 83 (252)
+...+|+.++-|||+||+++|.||.+-. .+ ..++++|..+|..++.+.+.+| ++++..+.
T Consensus 33 VK~k~DVyVsMPTGaGKSLCyQLPaL~~-------------~g-ITIV~SPLiALIkDQiDHL~~L------KVp~~SLN 92 (641)
T KOG0352|consen 33 VKRKCDVYVSMPTGAGKSLCYQLPALVH-------------GG-ITIVISPLIALIKDQIDHLKRL------KVPCESLN 92 (641)
T ss_pred HhccCcEEEeccCCCchhhhhhchHHHh-------------CC-eEEEehHHHHHHHHHHHHHHhc------CCchhHhc
Confidence 4567899999999999999999998732 13 5899999999999888877765 25555556
Q ss_pred CCcccCcchhhhhhcccccCCccccccCCccccCCChh-HHH--HHhhhhceeeccCC
Q psy7786 84 GGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQ-VHD--IIRRNLRILVEGDD 138 (252)
Q Consensus 84 g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~-~~~--~l~~~~~~~V~de~ 138 (252)
...+..++.+.+.+--...+.+...|.+|..--.-.-+ ... .-++.+.++|.||+
T Consensus 93 SKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEA 150 (641)
T KOG0352|consen 93 SKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEA 150 (641)
T ss_pred chhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechh
Confidence 66555555444433111111122233334332211111 111 11345688888886
No 125
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.01 E-value=3.3e-09 Score=77.52 Aligned_cols=106 Identities=28% Similarity=0.461 Sum_probs=71.8
Q ss_pred CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCcc
Q psy7786 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVP 87 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~~ 87 (252)
+++++.++||||||..+...+....... ...+++|++|+++++.|..+.+...... + +.+..+.++..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~---------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~--~~~~~~~~~~~ 68 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL---------KGGQVLVLAPTRELANQVAERLKELFGE-G--IKVGYLIGGTS 68 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc---------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-C--cEEEEEecCcc
Confidence 4789999999999999988888766542 2457999999999999999988887664 3 56666666644
Q ss_pred cCcchhhhhhcccccCCccccccCCccccCCChhHHHHHh------hhhceeeccCC
Q psy7786 88 MNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIR------RNLRILVEGDD 138 (252)
Q Consensus 88 ~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~------~~~~~~V~de~ 138 (252)
...+....... ...++.+++....... ....++|.||.
T Consensus 69 ~~~~~~~~~~~-------------~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~ 112 (144)
T cd00046 69 IKQQEKLLSGK-------------TDIVVGTPGRLLDELERLKLSLKKLDLLILDEA 112 (144)
T ss_pred hhHHHHHhcCC-------------CCEEEECcHHHHHHHHcCCcchhcCCEEEEeCH
Confidence 44333222222 3334444444333332 24778888985
No 126
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.01 E-value=3.7e-09 Score=96.91 Aligned_cols=97 Identities=29% Similarity=0.302 Sum_probs=86.5
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCc
Q psy7786 150 KLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPS 229 (252)
Q Consensus 150 ~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~t 229 (252)
.+++.+.+.+.+. +..|++.|.+++|....|+++++++|||+|||.+.++|.+..+.+.. ......+-.+|..+|-
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~---~~~~~~~i~~lYIsPL 82 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLG---KGKLEDGIYALYISPL 82 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhcc---CCCCCCceEEEEeCcH
Confidence 3788899999888 99999999999999999999999999999999999999999988763 1122446789999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCC
Q psy7786 230 RELARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 230 r~~a~~i~~~l~~l~~~~~i~ 250 (252)
|.|...+.+.|+..++.+|++
T Consensus 83 kALn~Di~~rL~~~~~~~G~~ 103 (814)
T COG1201 83 KALNNDIRRRLEEPLRELGIE 103 (814)
T ss_pred HHHHHHHHHHHHHHHHHcCCc
Confidence 999999999999999999874
No 127
>KOG0350|consensus
Probab=99.00 E-value=6.5e-10 Score=94.63 Aligned_cols=92 Identities=32% Similarity=0.415 Sum_probs=76.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhh---------cCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCc
Q psy7786 151 LPESLVRALEAKGIKKPTPIQVQGIPAAL---------SGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGP 221 (252)
Q Consensus 151 l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~---------~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~ 221 (252)
|++.+...+.++++..-+++|...+|..+ .++|+.+.++||+|||++|.+|+++.+.... -...
T Consensus 144 lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~-------v~~L 216 (620)
T KOG0350|consen 144 LEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP-------VKRL 216 (620)
T ss_pred HHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC-------ccce
Confidence 44455666889999999999988887764 3579999999999999999999998765432 1247
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHHhhCCC
Q psy7786 222 YGLIICPSRELARQTHDIIQYYCAALPI 249 (252)
Q Consensus 222 ~~LIf~~tr~~a~~i~~~l~~l~~~~~i 249 (252)
|++|++|||+++.|+++.+.++++..|+
T Consensus 217 RavVivPtr~L~~QV~~~f~~~~~~tgL 244 (620)
T KOG0350|consen 217 RAVVIVPTRELALQVYDTFKRLNSGTGL 244 (620)
T ss_pred EEEEEeeHHHHHHHHHHHHHHhccCCce
Confidence 8999999999999999999999988775
No 128
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=98.99 E-value=6.5e-10 Score=86.24 Aligned_cols=117 Identities=27% Similarity=0.357 Sum_probs=73.6
Q ss_pred ccCC-CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeee
Q psy7786 4 YRNS-RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLA 82 (252)
Q Consensus 4 ~~~g-~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~ 82 (252)
+.++ +++++.++||||||.++..+++..+.... ..++++++||++++.|..+.+..+..... ......
T Consensus 20 ~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~---------~~~~l~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~ 88 (201)
T smart00487 20 LLSGLRDVILAAPTGSGKTLAALLPALEALKRGK---------GKRVLVLVPTRELAEQWAEELKKLGPSLG--LKVVGL 88 (201)
T ss_pred HHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC---------CCcEEEEeCCHHHHHHHHHHHHHHhccCC--eEEEEE
Confidence 4556 89999999999999999999998775532 34699999999999999988888765433 233344
Q ss_pred eCCcccCcchhhhhhcc-cccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 83 IGGVPMNQSLDVIKKGI-QYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 83 ~g~~~~~~~~~~l~~~~-~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
.++.........+..+. ++. + .+++.+.+.......... ...++|.||.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~v~--~----~t~~~l~~~~~~~~~~~~-~~~~iIiDE~ 138 (201)
T smart00487 89 YGGDSKREQLRKLESGKTDIL--V----TTPGRLLDLLENDLLELS-NVDLVILDEA 138 (201)
T ss_pred eCCcchHHHHHHHhcCCCCEE--E----eChHHHHHHHHcCCcCHh-HCCEEEEECH
Confidence 55544333344444432 331 1 224433333222221222 3668888885
No 129
>PRK13767 ATP-dependent helicase; Provisional
Probab=98.96 E-value=5.1e-09 Score=98.79 Aligned_cols=88 Identities=25% Similarity=0.274 Sum_probs=73.3
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcH
Q psy7786 151 LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSR 230 (252)
Q Consensus 151 l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr 230 (252)
+++.+.+.+.. ++..|+++|..++|..+.|+|++++++||+|||.++++|++..+....... ....+.++|+++|||
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~--~~~~~~~~LyIsPtr 94 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREG--ELEDKVYCLYVSPLR 94 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhcccc--CCCCCeEEEEEcCHH
Confidence 67777777665 688999999999999999999999999999999999999999887532110 113467899999999
Q ss_pred HHHHHHHHHHH
Q psy7786 231 ELARQTHDIIQ 241 (252)
Q Consensus 231 ~~a~~i~~~l~ 241 (252)
++|.|+++.+.
T Consensus 95 aLa~di~~~L~ 105 (876)
T PRK13767 95 ALNNDIHRNLE 105 (876)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 130
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.94 E-value=1.9e-09 Score=95.74 Aligned_cols=102 Identities=19% Similarity=0.269 Sum_probs=64.8
Q ss_pred EEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCcccCc
Q psy7786 11 IGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQ 90 (252)
Q Consensus 11 ~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~~~~~ 90 (252)
++.++||||||+.|+..+- ..+.. +-++||++|+++|+.|+++.+++. .+ .++..++|+.+..+
T Consensus 1 LL~g~TGsGKT~v~l~~i~-~~l~~----------g~~vLvlvP~i~L~~Q~~~~l~~~---f~--~~v~vlhs~~~~~e 64 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIE-KVLAL----------GKSVLVLVPEIALTPQMIQRFKYR---FG--SQVAVLHSGLSDSE 64 (505)
T ss_pred CccCCCCCCHHHHHHHHHH-HHHHc----------CCeEEEEeCcHHHHHHHHHHHHHH---hC--CcEEEEECCCCHHH
Confidence 4679999999999965543 33332 457999999999999999888753 34 56778888877665
Q ss_pred chhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 91 SLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 91 ~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
+.+...+-.. +....++.+.......+.+ +.++|.||.
T Consensus 65 r~~~~~~~~~---------g~~~IVVGTrsalf~p~~~-l~lIIVDEe 102 (505)
T TIGR00595 65 KLQAWRKVKN---------GEILVVIGTRSALFLPFKN-LGLIIVDEE 102 (505)
T ss_pred HHHHHHHHHc---------CCCCEEECChHHHcCcccC-CCEEEEECC
Confidence 5444332100 0122233333333333444 788887774
No 131
>KOG4284|consensus
Probab=98.93 E-value=4.3e-10 Score=98.50 Aligned_cols=97 Identities=28% Similarity=0.368 Sum_probs=86.4
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcE
Q psy7786 143 CCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPY 222 (252)
Q Consensus 143 ~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~ 222 (252)
...|.++.+...++..|.+.+|..|+++|..++|..+.+-|+++++.+|+|||+.|.+..+..+... ...++
T Consensus 24 ~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~--------~~~~q 95 (980)
T KOG4284|consen 24 TPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR--------SSHIQ 95 (980)
T ss_pred CCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc--------cCcce
Confidence 3578899999999999999999999999999999999999999999999999999888777654332 34678
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhC
Q psy7786 223 GLIICPSRELARQTHDIIQYYCAAL 247 (252)
Q Consensus 223 ~LIf~~tr~~a~~i~~~l~~l~~~~ 247 (252)
.+|++|||++|.||.+.++++|..+
T Consensus 96 ~~Iv~PTREiaVQI~~tv~~v~~sf 120 (980)
T KOG4284|consen 96 KVIVTPTREIAVQIKETVRKVAPSF 120 (980)
T ss_pred eEEEecchhhhhHHHHHHHHhcccc
Confidence 9999999999999999999998754
No 132
>PRK09694 helicase Cas3; Provisional
Probab=98.93 E-value=1.1e-07 Score=89.05 Aligned_cols=74 Identities=20% Similarity=0.073 Sum_probs=53.7
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCC
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGG 85 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~ 85 (252)
++.-+++.||||+|||.|.+.... ++.... ..-+++|..||+++++|++++++.+.+..-....+...+|+
T Consensus 300 ~pgl~ileApTGsGKTEAAL~~A~-~l~~~~--------~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~L~Hg~ 370 (878)
T PRK09694 300 QPGLTIIEAPTGSGKTEAALAYAW-RLIDQG--------LADSIIFALPTQATANAMLSRLEALASKLFPSPNLILAHGN 370 (878)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHH-HHHHhC--------CCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCceEeecCc
Confidence 355689999999999999766554 443322 23578999999999999999998766543212466777777
Q ss_pred ccc
Q psy7786 86 VPM 88 (252)
Q Consensus 86 ~~~ 88 (252)
...
T Consensus 371 a~l 373 (878)
T PRK09694 371 SRF 373 (878)
T ss_pred chh
Confidence 654
No 133
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.92 E-value=3.4e-09 Score=101.35 Aligned_cols=114 Identities=18% Similarity=0.221 Sum_probs=66.6
Q ss_pred cccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEE--cC----cHHHHHHHHHHHHH-HHHhCCC
Q psy7786 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLII--CP----SRELARQTHDIIQY-YCAALPI 75 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil--~p----treLa~q~~~~~~~-l~~~~~~ 75 (252)
.+.++..++++|+||||||. .+|.+.. .... +..+.|+ -| +++||.|+.+++.. +++..|.
T Consensus 85 ai~~~~VviI~GeTGSGKTT--qlPq~ll--e~g~--------g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY 152 (1294)
T PRK11131 85 AIRDHQVVIVAGETGSGKTT--QLPKICL--ELGR--------GVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGY 152 (1294)
T ss_pred HHHhCCeEEEECCCCCCHHH--HHHHHHH--HcCC--------CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceece
Confidence 34566778888999999998 5884422 2211 2122232 24 67999999887764 4444442
Q ss_pred CcceeeeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCccc-ccccCCCCH
Q psy7786 76 PLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACC-SFRLMKLPE 153 (252)
Q Consensus 76 ~~~~~~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~-~~~~~~l~~ 153 (252)
.+ ..+++. .++.+| .+.|||+++....... .+. .+.++|.||+ + ++.+++|.-
T Consensus 153 ~v---------rf~~~~---s~~t~I------~v~TpG~LL~~l~~d~-~Ls-~~~~IIIDEA-----HERsLn~DfLL 206 (1294)
T PRK11131 153 KV---------RFNDQV---SDNTMV------KLMTDGILLAEIQQDR-LLM-QYDTIIIDEA-----HERSLNIDFIL 206 (1294)
T ss_pred ee---------cCcccc---CCCCCE------EEEChHHHHHHHhcCC-ccc-cCcEEEecCc-----cccccccchHH
Confidence 11 222222 233444 2345999988766432 244 4899999997 4 345555543
No 134
>PRK01172 ski2-like helicase; Provisional
Probab=98.90 E-value=9.8e-09 Score=94.81 Aligned_cols=88 Identities=19% Similarity=0.204 Sum_probs=78.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEE
Q psy7786 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGL 224 (252)
Q Consensus 145 ~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~L 224 (252)
.|.++++++.+.+.+...++. ++++|..+++....+++++++++||+|||..+.++++..+.. +.+++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~-----------~~k~v 69 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA-----------GLKSI 69 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh-----------CCcEE
Confidence 467889999999999999887 999999999999999999999999999999998888876542 35799
Q ss_pred EEcCcHHHHHHHHHHHHHHH
Q psy7786 225 IICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 225 If~~tr~~a~~i~~~l~~l~ 244 (252)
+++|+|++|.|.++.++++.
T Consensus 70 ~i~P~raLa~q~~~~~~~l~ 89 (674)
T PRK01172 70 YIVPLRSLAMEKYEELSRLR 89 (674)
T ss_pred EEechHHHHHHHHHHHHHHh
Confidence 99999999999999998764
No 135
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=98.89 E-value=1.1e-08 Score=98.55 Aligned_cols=88 Identities=26% Similarity=0.267 Sum_probs=71.9
Q ss_pred CHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHH
Q psy7786 152 PESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRE 231 (252)
Q Consensus 152 ~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~ 231 (252)
-.++.+.+.+.....|+++|..++|..+.|++++++++||+|||. |.++++..+.. .+++++|++|||+
T Consensus 64 ~~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~----------~g~~vLIL~PTre 132 (1171)
T TIGR01054 64 LKEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK----------KGKRCYIILPTTL 132 (1171)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh----------cCCeEEEEeCHHH
Confidence 344555566655568999999999999999999999999999997 66666654432 2678999999999
Q ss_pred HHHHHHHHHHHHHhhCCCC
Q psy7786 232 LARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 232 ~a~~i~~~l~~l~~~~~i~ 250 (252)
+|.|+++.++.+++.+++.
T Consensus 133 La~Qi~~~l~~l~~~~~i~ 151 (1171)
T TIGR01054 133 LVIQVAEKISSLAEKAGVG 151 (1171)
T ss_pred HHHHHHHHHHHHHHhcCCc
Confidence 9999999999999887653
No 136
>KOG0354|consensus
Probab=98.87 E-value=2.5e-09 Score=96.17 Aligned_cols=116 Identities=15% Similarity=0.093 Sum_probs=77.7
Q ss_pred cccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeee
Q psy7786 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLA 82 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~ 82 (252)
++| |+|+++++|||+|||.....-+.+++-..+ ..++++++|||-|..|+...++.++.. -+....
T Consensus 73 ~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p---------~~KiVF~aP~~pLv~QQ~a~~~~~~~~----~~~T~~ 138 (746)
T KOG0354|consen 73 PAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP---------KGKVVFLAPTRPLVNQQIACFSIYLIP----YSVTGQ 138 (746)
T ss_pred Hhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC---------cceEEEeeCCchHHHHHHHHHhhccCc----ccceee
Confidence 456 999999999999999998888888875544 358999999999999998777766543 344445
Q ss_pred eCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 83 IGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 83 ~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
.||.........+-...++. +.| |..+.+-.......-.+.+..+|.||+
T Consensus 139 l~~~~~~~~r~~i~~s~~vf--f~T----pQil~ndL~~~~~~~ls~fs~iv~DE~ 188 (746)
T KOG0354|consen 139 LGDTVPRSNRGEIVASKRVF--FRT----PQILENDLKSGLHDELSDFSLIVFDEC 188 (746)
T ss_pred ccCccCCCchhhhhcccceE--EeC----hHhhhhhcccccccccceEEEEEEccc
Confidence 56644444444444444441 333 666655544432222234778888886
No 137
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.86 E-value=1.5e-08 Score=93.51 Aligned_cols=93 Identities=22% Similarity=0.249 Sum_probs=79.7
Q ss_pred ccCCCCHHHHHHHH-----HCCCCCC---hHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCC
Q psy7786 147 RLMKLPESLVRALE-----AKGIKKP---TPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPG 218 (252)
Q Consensus 147 ~~~~l~~~l~~~l~-----~~~~~~p---~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~ 218 (252)
..+++..++.+.+. ..|+..| +++|.+.+|..+.++++++.++||+|||++|++|++..++..
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g--------- 135 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTG--------- 135 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc---------
Confidence 45566777766665 5688888 999999999999999999999999999999999999876532
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHHHHhhCCCC
Q psy7786 219 EGPYGLIICPSRELARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 219 ~~~~~LIf~~tr~~a~~i~~~l~~l~~~~~i~ 250 (252)
..++|++|||+||.|+++++..++++++++
T Consensus 136 --~~v~IVTpTrELA~Qdae~m~~L~k~lGLs 165 (970)
T PRK12899 136 --KPVHLVTVNDYLAQRDCEWVGSVLRWLGLT 165 (970)
T ss_pred --CCeEEEeCCHHHHHHHHHHHHHHHhhcCCe
Confidence 238999999999999999999999998864
No 138
>KOG0351|consensus
Probab=98.85 E-value=5.8e-09 Score=97.36 Aligned_cols=204 Identities=17% Similarity=0.261 Sum_probs=114.9
Q ss_pred cccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeee
Q psy7786 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLA 82 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~ 82 (252)
..+.|+|.++..|||.||.++|.||.+- . +.-.|+|+|..+|..++...+. ..+ |....+
T Consensus 275 ~~l~Gkd~fvlmpTG~GKSLCYQlPA~l---~-----------~gitvVISPL~SLm~DQv~~L~----~~~--I~a~~L 334 (941)
T KOG0351|consen 275 ATLSGKDCFVLMPTGGGKSLCYQLPALL---L-----------GGVTVVISPLISLMQDQVTHLS----KKG--IPACFL 334 (941)
T ss_pred HHHcCCceEEEeecCCceeeEeeccccc---c-----------CCceEEeccHHHHHHHHHHhhh----hcC--cceeec
Confidence 4689999999999999999999999872 1 2258999999999887755442 223 777788
Q ss_pred eCCcccCcchhh---hhhcccccCCccccccCCccccCCChhHHHHH-hh---hhceeeccCC--CCCcccccc------
Q psy7786 83 IGGVPMNQSLDV---IKKGIQYNDPIKTSWRAPRCILSLPDQVHDII-RR---NLRILVEGDD--VPPACCSFR------ 147 (252)
Q Consensus 83 ~g~~~~~~~~~~---l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l-~~---~~~~~V~de~--~~~~~~~~~------ 147 (252)
.++....++... +.++..+ +...|.+|..+..--.-..... .. .+..+|.||+ +..-.+.|.
T Consensus 335 ~s~q~~~~~~~i~q~l~~~~~~---ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l 411 (941)
T KOG0351|consen 335 SSIQTAAERLAILQKLANGNPI---IKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRL 411 (941)
T ss_pred cccccHHHHHHHHHHHhCCCCe---EEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHH
Confidence 888776644433 3444323 3445666877766544332221 22 2567788886 000000010
Q ss_pred -----------cCCCCHH-----HHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhc
Q psy7786 148 -----------LMKLPES-----LVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQET 211 (252)
Q Consensus 148 -----------~~~l~~~-----l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~ 211 (252)
-+++.++ -.+++...++.+|... ...+...++.+.-....++...+.+-. .+...
T Consensus 412 ~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~-----~~sfnR~NL~yeV~~k~~~~~~~~~~~--~~~~~-- 482 (941)
T KOG0351|consen 412 GLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELF-----KSSFNRPNLKYEVSPKTDKDALLDILE--ESKLR-- 482 (941)
T ss_pred HHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCccee-----cccCCCCCceEEEEeccCccchHHHHH--Hhhhc--
Confidence 0111111 1334444455444411 111222233222222222333322211 11111
Q ss_pred cCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 212 KLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 212 ~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
..+...||.|.+|..|+++...|++++
T Consensus 483 ------~~~~s~IIYC~sr~~ce~vs~~L~~~~ 509 (941)
T KOG0351|consen 483 ------HPDQSGIIYCLSRKECEQVSAVLRSLG 509 (941)
T ss_pred ------CCCCCeEEEeCCcchHHHHHHHHHHhc
Confidence 223458999999999999999999877
No 139
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.84 E-value=8.4e-09 Score=97.92 Aligned_cols=76 Identities=25% Similarity=0.308 Sum_probs=62.5
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHH-HHHHHHHHhCCCCcceeee
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH-DIIQYYCAALPIPLRTCLA 82 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~-~~~~~l~~~~~~~~~~~~~ 82 (252)
+-+++++++.|+||+|||+||++|.+.....+ +-+++|.++|+.|..|+. +.+..+.+.++.+++++.+
T Consensus 273 l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~----------~~~vvIsT~T~~LQ~Ql~~kDiP~L~~~~~~~~~~~~l 342 (928)
T PRK08074 273 LRDSEHALIEAGTGTGKSLAYLLPAAYFAKKK----------EEPVVISTYTIQLQQQLLEKDIPLLQKIFPFPVEAALL 342 (928)
T ss_pred HhcCCCEEEECCCCCchhHHHHHHHHHHhhcc----------CCeEEEEcCCHHHHHHHHHhhHHHHHHHcCCCceEEEE
Confidence 45788999999999999999999998654322 446999999999999974 5677777888877899989
Q ss_pred eCCcccC
Q psy7786 83 IGGVPMN 89 (252)
Q Consensus 83 ~g~~~~~ 89 (252)
.|..++-
T Consensus 343 KGr~nYl 349 (928)
T PRK08074 343 KGRSHYL 349 (928)
T ss_pred Ecccccc
Confidence 9887763
No 140
>PRK09401 reverse gyrase; Reviewed
Probab=98.82 E-value=2.7e-08 Score=95.88 Aligned_cols=84 Identities=29% Similarity=0.379 Sum_probs=67.6
Q ss_pred HHHHHHHC-CCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHH
Q psy7786 155 LVRALEAK-GIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELA 233 (252)
Q Consensus 155 l~~~l~~~-~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a 233 (252)
+.+.+.+. |+ .|+++|..++|..+.|+|++++++||+|||. +.++++..+.. .+.+++|++|||+||
T Consensus 69 ~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~----------~g~~alIL~PTreLa 136 (1176)
T PRK09401 69 FEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK----------KGKKSYIIFPTRLLV 136 (1176)
T ss_pred HHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh----------cCCeEEEEeccHHHH
Confidence 34445444 44 8999999999999999999999999999996 44555443321 267899999999999
Q ss_pred HHHHHHHHHHHhhCCCC
Q psy7786 234 RQTHDIIQYYCAALPIG 250 (252)
Q Consensus 234 ~~i~~~l~~l~~~~~i~ 250 (252)
.|+++.+++++...++.
T Consensus 137 ~Qi~~~l~~l~~~~~~~ 153 (1176)
T PRK09401 137 EQVVEKLEKFGEKVGCG 153 (1176)
T ss_pred HHHHHHHHHHhhhcCce
Confidence 99999999999877653
No 141
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=98.80 E-value=2.9e-08 Score=75.42 Aligned_cols=72 Identities=38% Similarity=0.547 Sum_probs=62.9
Q ss_pred hHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHhhC
Q psy7786 168 TPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247 (252)
Q Consensus 168 ~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~~~ 247 (252)
|+.|..+++....++++++.+++|+|||.++..+++..+.+.. ..++++++|++++++++.+.++++....
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~---------~~~~lii~P~~~l~~q~~~~~~~~~~~~ 71 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGK---------DARVLIIVPTRALAEQQFERLRKFFSNT 71 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTS---------SSEEEEEESSHHHHHHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCC---------CceEEEEeeccccccccccccccccccc
Confidence 5789999999999999999999999999999999998776641 3479999999999999999999888764
Q ss_pred C
Q psy7786 248 P 248 (252)
Q Consensus 248 ~ 248 (252)
+
T Consensus 72 ~ 72 (169)
T PF00270_consen 72 N 72 (169)
T ss_dssp T
T ss_pred c
Confidence 3
No 142
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.77 E-value=2.5e-08 Score=91.99 Aligned_cols=75 Identities=20% Similarity=0.124 Sum_probs=62.7
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHH-HHHHHHHHHhCCCCcceeeeeCC
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT-HDIIQYYCAALPIPLRTCLAIGG 85 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~-~~~~~~l~~~~~~~~~~~~~~g~ 85 (252)
++.+++.|+||+|||+||++|.+-..... +-+++|-+.|+.|-.|+ .+.+-.+.+.++.+++++++-|.
T Consensus 49 ~~~lviEAgTGtGKTlaYLlPai~~A~~~----------~k~vVIST~T~~LQeQL~~kDlP~l~~~l~~~~~~~llKGr 118 (697)
T PRK11747 49 GRILVIEAGTGVGKTLSYLLAGIPIARAE----------KKKLVISTATVALQEQLVSKDLPLLLKISGLDFKFTLAKGR 118 (697)
T ss_pred cceEEEECCCCcchhHHHHHHHHHHHHHc----------CCeEEEEcCCHHHHHHHHhhhhhHHHHHcCCCceEEEEcCc
Confidence 57899999999999999999998655433 34699999999999997 57788888888888999988888
Q ss_pred cccCcc
Q psy7786 86 VPMNQS 91 (252)
Q Consensus 86 ~~~~~~ 91 (252)
.++-..
T Consensus 119 ~nYlCl 124 (697)
T PRK11747 119 GRYVCP 124 (697)
T ss_pred cccccH
Confidence 777544
No 143
>PRK14701 reverse gyrase; Provisional
Probab=98.76 E-value=5.1e-08 Score=96.25 Aligned_cols=84 Identities=26% Similarity=0.305 Sum_probs=68.8
Q ss_pred HHHHHHHHH-CCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHH
Q psy7786 153 ESLVRALEA-KGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRE 231 (252)
Q Consensus 153 ~~l~~~l~~-~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~ 231 (252)
.++.+.+.+ .|+ .|+++|..++|..+.|+|++++++||+|||..++++.+... ..+.+++|++|||+
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~-----------~~g~~aLVl~PTre 133 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA-----------LKGKKCYIILPTTL 133 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH-----------hcCCeEEEEECHHH
Confidence 334556665 688 69999999999999999999999999999996555544321 12568999999999
Q ss_pred HHHHHHHHHHHHHhhCC
Q psy7786 232 LARQTHDIIQYYCAALP 248 (252)
Q Consensus 232 ~a~~i~~~l~~l~~~~~ 248 (252)
|+.|+.+.++.+++.++
T Consensus 134 La~Qi~~~l~~l~~~~~ 150 (1638)
T PRK14701 134 LVKQTVEKIESFCEKAN 150 (1638)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 99999999999998764
No 144
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.76 E-value=2.4e-08 Score=88.42 Aligned_cols=69 Identities=30% Similarity=0.399 Sum_probs=61.7
Q ss_pred HCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q psy7786 161 AKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 240 (252)
Q Consensus 161 ~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l 240 (252)
..|+..|+++|..++++.+.|+|+++.++||+|||++|++|.+.. +..+||++|||+|+.+..+.+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~--------------~~~~lVi~P~~~L~~dq~~~l 71 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS--------------DGITLVISPLISLMEDQVLQL 71 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc--------------CCcEEEEecHHHHHHHHHHHH
Confidence 458899999999999999999999999999999999999998741 346999999999999998888
Q ss_pred HHH
Q psy7786 241 QYY 243 (252)
Q Consensus 241 ~~l 243 (252)
+.+
T Consensus 72 ~~~ 74 (470)
T TIGR00614 72 KAS 74 (470)
T ss_pred HHc
Confidence 754
No 145
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=98.73 E-value=6.8e-08 Score=87.13 Aligned_cols=75 Identities=29% Similarity=0.284 Sum_probs=67.4
Q ss_pred CCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 163 GIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 242 (252)
Q Consensus 163 ~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~ 242 (252)
.-..|+++|..++|.++.|+ +..+.||+|||+++.+|++.... .+.+++|++||++||.|.++++..
T Consensus 100 lg~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al-----------~G~~v~VvTptreLA~qdae~~~~ 166 (656)
T PRK12898 100 LGQRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL-----------AGLPVHVITVNDYLAERDAELMRP 166 (656)
T ss_pred hCCCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh-----------cCCeEEEEcCcHHHHHHHHHHHHH
Confidence 34479999999999999999 89999999999999999997543 267899999999999999999999
Q ss_pred HHhhCCCC
Q psy7786 243 YCAALPIG 250 (252)
Q Consensus 243 l~~~~~i~ 250 (252)
+.+.+|++
T Consensus 167 l~~~lGls 174 (656)
T PRK12898 167 LYEALGLT 174 (656)
T ss_pred HHhhcCCE
Confidence 99998875
No 146
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=98.69 E-value=9.9e-08 Score=89.32 Aligned_cols=86 Identities=33% Similarity=0.464 Sum_probs=78.6
Q ss_pred HHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHH
Q psy7786 154 SLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELA 233 (252)
Q Consensus 154 ~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a 233 (252)
.+...+...+...+...|..++.....|+++++.+.||||||.+|++|++..++.+. ..++|++.||+.||
T Consensus 58 ~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~---------~a~AL~lYPtnALa 128 (851)
T COG1205 58 SLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP---------SARALLLYPTNALA 128 (851)
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc---------CccEEEEechhhhH
Confidence 346778888888899999999999999999999999999999999999999988764 34799999999999
Q ss_pred HHHHHHHHHHHhhCC
Q psy7786 234 RQTHDIIQYYCAALP 248 (252)
Q Consensus 234 ~~i~~~l~~l~~~~~ 248 (252)
+...+.|+++.+.++
T Consensus 129 ~DQ~~rl~~~~~~~~ 143 (851)
T COG1205 129 NDQAERLRELISDLP 143 (851)
T ss_pred hhHHHHHHHHHHhCC
Confidence 999999999999887
No 147
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.69 E-value=1.3e-07 Score=89.26 Aligned_cols=86 Identities=22% Similarity=0.256 Sum_probs=70.9
Q ss_pred CHHHHHHHHHC-CCCCChHHHHhhhhhhhcC------CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEE
Q psy7786 152 PESLVRALEAK-GIKKPTPIQVQGIPAALSG------RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGL 224 (252)
Q Consensus 152 ~~~l~~~l~~~-~~~~p~~iQ~~~~p~~~~~------~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~L 224 (252)
.....+.+... ++ .||+.|..+++....+ .|.++++++|+|||.+++.+++..+.. +.+++
T Consensus 437 ~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~-----------g~qvl 504 (926)
T TIGR00580 437 DLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD-----------GKQVA 504 (926)
T ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh-----------CCeEE
Confidence 33445555554 56 5999999999998875 689999999999999999998876542 46899
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhCCC
Q psy7786 225 IICPSRELARQTHDIIQYYCAALPI 249 (252)
Q Consensus 225 If~~tr~~a~~i~~~l~~l~~~~~i 249 (252)
|++||++||.|.++.++++.+.+++
T Consensus 505 vLvPT~~LA~Q~~~~f~~~~~~~~i 529 (926)
T TIGR00580 505 VLVPTTLLAQQHFETFKERFANFPV 529 (926)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCc
Confidence 9999999999999999988777665
No 148
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=98.66 E-value=7e-08 Score=89.10 Aligned_cols=76 Identities=24% Similarity=0.276 Sum_probs=60.9
Q ss_pred CCCCChHHHHhhhhhhhcCC-cEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEc-CcHHHHHHHHHHH
Q psy7786 163 GIKKPTPIQVQGIPAALSGR-DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIIC-PSRELARQTHDII 240 (252)
Q Consensus 163 ~~~~p~~iQ~~~~p~~~~~~-~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~-~tr~~a~~i~~~l 240 (252)
|+. |+++|...+|..+.|+ ++++.++||+|||.++.+..+.. . .....++.|||+ |||++|.|+++.+
T Consensus 13 G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~--~-------~~~~~~~rLv~~vPtReLa~Qi~~~~ 82 (844)
T TIGR02621 13 GYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV--E-------IGAKVPRRLVYVVNRRTVVDQVTEEA 82 (844)
T ss_pred CCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc--c-------ccccccceEEEeCchHHHHHHHHHHH
Confidence 676 9999999999999998 57778999999999765444421 1 112357788866 9999999999999
Q ss_pred HHHHhhCC
Q psy7786 241 QYYCAALP 248 (252)
Q Consensus 241 ~~l~~~~~ 248 (252)
++++++++
T Consensus 83 ~~~~k~l~ 90 (844)
T TIGR02621 83 EKIGERLP 90 (844)
T ss_pred HHHHHHhc
Confidence 99999874
No 149
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.65 E-value=6.3e-08 Score=80.16 Aligned_cols=62 Identities=13% Similarity=0.037 Sum_probs=49.5
Q ss_pred cccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l 69 (252)
.+.+|+++++.||||||||++|++|++..+...... ....+++|.++|..+..|....++++
T Consensus 23 ~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 23 VLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred HHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHHHHHHHhc
Confidence 456899999999999999999999999876543320 02347999999999999987777765
No 150
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.65 E-value=6.3e-08 Score=80.16 Aligned_cols=62 Identities=13% Similarity=0.037 Sum_probs=49.5
Q ss_pred cccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l 69 (252)
.+.+|+++++.||||||||++|++|++..+...... ....+++|.++|..+..|....++++
T Consensus 23 ~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 23 VLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred HHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHHHHHHHhc
Confidence 456899999999999999999999999876543320 02347999999999999987777765
No 151
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.65 E-value=1.9e-07 Score=86.20 Aligned_cols=86 Identities=22% Similarity=0.220 Sum_probs=70.6
Q ss_pred HHHHHHH-HHCCCCCChHHHHhhhhhhhcC------CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEE
Q psy7786 153 ESLVRAL-EAKGIKKPTPIQVQGIPAALSG------RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLI 225 (252)
Q Consensus 153 ~~l~~~l-~~~~~~~p~~iQ~~~~p~~~~~------~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LI 225 (252)
..+.+.+ ....+ .|++.|..+++....+ .+.++++++|+|||.+++++++..+. .+.+++|
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~-----------~g~q~li 315 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE-----------AGYQAAL 315 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-----------cCCeEEE
Confidence 3444444 44455 6999999999988876 37999999999999999999987653 2668999
Q ss_pred EcCcHHHHHHHHHHHHHHHhhCCCC
Q psy7786 226 ICPSRELARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 226 f~~tr~~a~~i~~~l~~l~~~~~i~ 250 (252)
++||+++|.|+++.++++.+.++++
T Consensus 316 laPT~~LA~Q~~~~l~~l~~~~~i~ 340 (681)
T PRK10917 316 MAPTEILAEQHYENLKKLLEPLGIR 340 (681)
T ss_pred EeccHHHHHHHHHHHHHHHhhcCcE
Confidence 9999999999999999999887653
No 152
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.62 E-value=1.9e-07 Score=85.49 Aligned_cols=84 Identities=27% Similarity=0.241 Sum_probs=70.3
Q ss_pred HHHHHHHHCCCCCChHHHHhhhhhhhcC------CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEc
Q psy7786 154 SLVRALEAKGIKKPTPIQVQGIPAALSG------RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIIC 227 (252)
Q Consensus 154 ~l~~~l~~~~~~~p~~iQ~~~~p~~~~~------~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~ 227 (252)
.+.+.+...+| .|++.|..+++..+.+ .+.++++++|+|||.+++++++..+.. +.+++|++
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~-----------g~qvlila 291 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA-----------GYQVALMA 291 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-----------CCcEEEEC
Confidence 34455667777 6999999999988865 257999999999999999998876532 56899999
Q ss_pred CcHHHHHHHHHHHHHHHhhCCC
Q psy7786 228 PSRELARQTHDIIQYYCAALPI 249 (252)
Q Consensus 228 ~tr~~a~~i~~~l~~l~~~~~i 249 (252)
||+++|.|+++.++++.+.+++
T Consensus 292 PT~~LA~Q~~~~~~~l~~~~gi 313 (630)
T TIGR00643 292 PTEILAEQHYNSLRNLLAPLGI 313 (630)
T ss_pred CHHHHHHHHHHHHHHHhcccCc
Confidence 9999999999999999887665
No 153
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=98.56 E-value=3e-07 Score=83.83 Aligned_cols=74 Identities=30% Similarity=0.432 Sum_probs=63.7
Q ss_pred HHHHHH-CCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHH
Q psy7786 156 VRALEA-KGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELAR 234 (252)
Q Consensus 156 ~~~l~~-~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~ 234 (252)
.+.+++ .|+..++++|..+++..+.|+|+++.++||+|||++|.+|.+.. ...+||++|+++++.
T Consensus 14 ~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~--------------~g~tlVisPl~sL~~ 79 (607)
T PRK11057 14 KQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL--------------DGLTLVVSPLISLMK 79 (607)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc--------------CCCEEEEecHHHHHH
Confidence 344433 58999999999999999999999999999999999999998842 235899999999999
Q ss_pred HHHHHHHHH
Q psy7786 235 QTHDIIQYY 243 (252)
Q Consensus 235 ~i~~~l~~l 243 (252)
+..+.++.+
T Consensus 80 dqv~~l~~~ 88 (607)
T PRK11057 80 DQVDQLLAN 88 (607)
T ss_pred HHHHHHHHc
Confidence 998888764
No 154
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=98.46 E-value=3.9e-06 Score=75.03 Aligned_cols=103 Identities=22% Similarity=0.319 Sum_probs=78.0
Q ss_pred EEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCcccCc
Q psy7786 11 IGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQ 90 (252)
Q Consensus 11 ~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~~~~~ 90 (252)
++++-=|||||+..++.+++.+.. |.|+..++||--||.|=++.+.++...+| +++...+|....+.
T Consensus 287 LlQGDVGSGKTvVA~laml~ai~~-----------G~Q~ALMAPTEILA~QH~~~~~~~l~~~~--i~V~lLtG~~kgk~ 353 (677)
T COG1200 287 LLQGDVGSGKTVVALLAMLAAIEA-----------GYQAALMAPTEILAEQHYESLRKWLEPLG--IRVALLTGSLKGKA 353 (677)
T ss_pred HhccCcCCCHHHHHHHHHHHHHHc-----------CCeeEEeccHHHHHHHHHHHHHHHhhhcC--CeEEEeecccchhH
Confidence 567788999999999999987743 66899999999999999999999999888 89999999988776
Q ss_pred chhhhhh---c-ccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 91 SLDVIKK---G-IQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 91 ~~~~l~~---~-~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
+.+.+.+ | .|++ |.| .-.+ ++...|.+ +.++|.||-
T Consensus 354 r~~~l~~l~~G~~~iv--VGT----HALi-----Qd~V~F~~-LgLVIiDEQ 393 (677)
T COG1200 354 RKEILEQLASGEIDIV--VGT----HALI-----QDKVEFHN-LGLVIIDEQ 393 (677)
T ss_pred HHHHHHHHhCCCCCEE--EEc----chhh-----hcceeecc-eeEEEEecc
Confidence 6665554 3 3331 333 2111 22344555 888888884
No 155
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.44 E-value=1.3e-06 Score=84.36 Aligned_cols=78 Identities=27% Similarity=0.247 Sum_probs=64.0
Q ss_pred HHCCCCCChHHHHhhhhhhhcC------CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHH
Q psy7786 160 EAKGIKKPTPIQVQGIPAALSG------RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELA 233 (252)
Q Consensus 160 ~~~~~~~p~~iQ~~~~p~~~~~------~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a 233 (252)
....+ .||++|..+++..+.+ .|.++++++|+|||..++.+....+. .+.+++|++||+++|
T Consensus 595 ~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~-----------~g~qvlvLvPT~eLA 662 (1147)
T PRK10689 595 DSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE-----------NHKQVAVLVPTTLLA 662 (1147)
T ss_pred HhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH-----------cCCeEEEEeCcHHHH
Confidence 44445 7999999999998887 79999999999999988777654432 267899999999999
Q ss_pred HHHHHHHHHHHhhCCC
Q psy7786 234 RQTHDIIQYYCAALPI 249 (252)
Q Consensus 234 ~~i~~~l~~l~~~~~i 249 (252)
.|+++.+++.....++
T Consensus 663 ~Q~~~~f~~~~~~~~v 678 (1147)
T PRK10689 663 QQHYDNFRDRFANWPV 678 (1147)
T ss_pred HHHHHHHHHhhccCCc
Confidence 9999999886665543
No 156
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=98.43 E-value=9.6e-07 Score=83.56 Aligned_cols=83 Identities=25% Similarity=0.301 Sum_probs=65.4
Q ss_pred ccccCCC--CHHHHHHHHH-CCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCc
Q psy7786 145 SFRLMKL--PESLVRALEA-KGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGP 221 (252)
Q Consensus 145 ~~~~~~l--~~~l~~~l~~-~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~ 221 (252)
.|....| ...+...+.+ .|+..+.+.|..++++++.|+|++++++||+|||++|.+|.+.. ..
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~--------------~G 501 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC--------------PG 501 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc--------------CC
Confidence 4554444 4445444443 47899999999999999999999999999999999999999842 34
Q ss_pred EEEEEcCcHHHHHHHHHHHH
Q psy7786 222 YGLIICPSRELARQTHDIIQ 241 (252)
Q Consensus 222 ~~LIf~~tr~~a~~i~~~l~ 241 (252)
.+||++|+++|+++....+.
T Consensus 502 iTLVISPLiSLmqDQV~~L~ 521 (1195)
T PLN03137 502 ITLVISPLVSLIQDQIMNLL 521 (1195)
T ss_pred cEEEEeCHHHHHHHHHHHHH
Confidence 69999999999985444443
No 157
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=98.40 E-value=9.3e-07 Score=80.59 Aligned_cols=70 Identities=27% Similarity=0.413 Sum_probs=62.1
Q ss_pred HCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q psy7786 161 AKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 240 (252)
Q Consensus 161 ~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l 240 (252)
..|+..+.+.|..++++++.|+|++++++||+|||.+|.+|.+.. ...++|++|+++++.+..+.+
T Consensus 8 ~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~--------------~g~~lVisPl~sL~~dq~~~l 73 (591)
T TIGR01389 8 TFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL--------------KGLTVVISPLISLMKDQVDQL 73 (591)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc--------------CCcEEEEcCCHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999998741 235899999999999999888
Q ss_pred HHHH
Q psy7786 241 QYYC 244 (252)
Q Consensus 241 ~~l~ 244 (252)
+.++
T Consensus 74 ~~~g 77 (591)
T TIGR01389 74 RAAG 77 (591)
T ss_pred HHcC
Confidence 8753
No 158
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.39 E-value=1.8e-06 Score=83.31 Aligned_cols=109 Identities=19% Similarity=0.155 Sum_probs=60.2
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeee
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAI 83 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~ 83 (252)
+.++..++++|+||||||. .+|.+. +..... ...+.++.-|-|--|.. ..+.+++.++ ..+...+
T Consensus 79 l~~~~vvii~g~TGSGKTT--qlPq~l--le~~~~------~~~~I~~tQPRRlAA~s---vA~RvA~elg--~~lG~~V 143 (1283)
T TIGR01967 79 IAENQVVIIAGETGSGKTT--QLPKIC--LELGRG------SHGLIGHTQPRRLAART---VAQRIAEELG--TPLGEKV 143 (1283)
T ss_pred HHhCceEEEeCCCCCCcHH--HHHHHH--HHcCCC------CCceEecCCccHHHHHH---HHHHHHHHhC--CCcceEE
Confidence 4456678999999999997 467553 222210 11223333465544433 3445555555 3444445
Q ss_pred CC-cccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 84 GG-VPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 84 g~-~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
|. ...+.+.. ....|. + .|+|+++....... +...+.++|.||.
T Consensus 144 GY~vR~~~~~s---~~T~I~--~----~TdGiLLr~l~~d~--~L~~~~~IIIDEa 188 (1283)
T TIGR01967 144 GYKVRFHDQVS---SNTLVK--L----MTDGILLAETQQDR--FLSRYDTIIIDEA 188 (1283)
T ss_pred eeEEcCCcccC---CCceee--e----ccccHHHHHhhhCc--ccccCcEEEEcCc
Confidence 52 33433332 223331 3 34999987765432 2344899999997
No 159
>KOG0353|consensus
Probab=98.36 E-value=9.6e-07 Score=73.45 Aligned_cols=68 Identities=22% Similarity=0.325 Sum_probs=51.9
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCL 81 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~ 81 (252)
-+.+.|+|+++.-|||-||+++|.||.+. . .-.+|+++|...|..++.-.++.++ +....
T Consensus 104 n~~ma~ed~~lil~tgggkslcyqlpal~---a-----------dg~alvi~plislmedqil~lkqlg------i~as~ 163 (695)
T KOG0353|consen 104 NATMAGEDAFLILPTGGGKSLCYQLPALC---A-----------DGFALVICPLISLMEDQILQLKQLG------IDASM 163 (695)
T ss_pred hhhhccCceEEEEeCCCccchhhhhhHHh---c-----------CCceEeechhHHHHHHHHHHHHHhC------cchhh
Confidence 45678999999999999999999999873 2 2248999999999998887777663 44444
Q ss_pred eeCCcccC
Q psy7786 82 AIGGVPMN 89 (252)
Q Consensus 82 ~~g~~~~~ 89 (252)
+...++.+
T Consensus 164 lnansske 171 (695)
T KOG0353|consen 164 LNANSSKE 171 (695)
T ss_pred ccCcccHH
Confidence 44444443
No 160
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=98.31 E-value=2e-06 Score=65.96 Aligned_cols=52 Identities=31% Similarity=0.355 Sum_probs=41.9
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCA 71 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~ 71 (252)
+++++++.++||||||..++..+.... . ++++++|++.|+.|..+.++.+..
T Consensus 24 ~~~~~ll~~~tGsGKT~~~~~~~~~l~-~-------------~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 24 EERRVLLNAPTGSGKTIIALALILELA-R-------------KVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp GCSEEEEEESTTSSHHHHHHHHHHHHH-C-------------EEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCcChhhhhhhhccc-c-------------ceeEecCHHHHHHHHHHHHHHhhh
Confidence 368999999999999988875444332 1 699999999999999999866643
No 161
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=98.30 E-value=3.5e-06 Score=77.92 Aligned_cols=73 Identities=26% Similarity=0.327 Sum_probs=64.9
Q ss_pred CCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 165 KKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 165 ~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
..|+++|....+....|+ +..+.||+|||+++.+|.+...+. +.++.|++||++||.|.++++..+.
T Consensus 77 ~~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~-----------G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 77 MRPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE-----------GKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred CCCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc-----------CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 389999999999888876 899999999999999999855442 6679999999999999999999999
Q ss_pred hhCCCC
Q psy7786 245 AALPIG 250 (252)
Q Consensus 245 ~~~~i~ 250 (252)
+.+|++
T Consensus 144 ~~lGl~ 149 (790)
T PRK09200 144 EFLGLT 149 (790)
T ss_pred hhcCCe
Confidence 999875
No 162
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.30 E-value=1.6e-06 Score=80.32 Aligned_cols=107 Identities=20% Similarity=0.181 Sum_probs=77.2
Q ss_pred EEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCcccCc
Q psy7786 11 IGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQ 90 (252)
Q Consensus 11 ~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~~~~~ 90 (252)
++.-+||+|||++..+|++-..+. |.++-+++||--||.|-++++..+-+.+| +++.++.|+.+.++
T Consensus 99 iaEM~TGEGKTLvA~l~a~l~al~-----------G~~VhvvT~ndyLA~RD~e~m~~l~~~lG--l~v~~i~~~~~~~e 165 (913)
T PRK13103 99 IAEMRTGEGKTLVGTLAVYLNALS-----------GKGVHVVTVNDYLARRDANWMRPLYEFLG--LSVGIVTPFQPPEE 165 (913)
T ss_pred cccccCCCCChHHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHHHhcccC--CEEEEECCCCCHHH
Confidence 678899999999999999866554 55699999999999999999999999988 89998888877666
Q ss_pred chhhhhhcccccCCccccccCCccc-----cCCCh-hHHHHHhhhhceeeccCC
Q psy7786 91 SLDVIKKGIQYNDPIKTSWRAPRCI-----LSLPD-QVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 91 ~~~~l~~~~~i~~~i~t~~~~p~~l-----~~~~~-~~~~~l~~~~~~~V~de~ 138 (252)
+..... +|| .|+|...+ .+... .......+.+.+.+.||.
T Consensus 166 rr~~Y~--~dI------~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEv 211 (913)
T PRK13103 166 KRAAYA--ADI------TYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEV 211 (913)
T ss_pred HHHHhc--CCE------EEEcccccccchhhccceechhhhcccccceeEechh
Confidence 555444 565 34444443 22222 222233345777777664
No 163
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.28 E-value=5.2e-06 Score=76.12 Aligned_cols=62 Identities=21% Similarity=0.204 Sum_probs=44.7
Q ss_pred CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCC
Q psy7786 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGG 85 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~ 85 (252)
+..+++.|||+|||+..+.-+ ..+ .-++|||+|+.+|+.|-.+.+.++....+ ..+..++|+
T Consensus 274 r~GIIvLPtGaGKTlvai~aa-~~l-------------~k~tLILvps~~Lv~QW~~ef~~~~~l~~--~~I~~~tg~ 335 (732)
T TIGR00603 274 RSGIIVLPCGAGKSLVGVTAA-CTV-------------KKSCLVLCTSAVSVEQWKQQFKMWSTIDD--SQICRFTSD 335 (732)
T ss_pred CCcEEEeCCCCChHHHHHHHH-HHh-------------CCCEEEEeCcHHHHHHHHHHHHHhcCCCC--ceEEEEecC
Confidence 467999999999998765432 222 12499999999999999998888753322 445555665
No 164
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.27 E-value=2.6e-05 Score=64.29 Aligned_cols=98 Identities=15% Similarity=0.181 Sum_probs=66.6
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeee
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAI 83 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~ 83 (252)
+.+.+|.++.|-||+|||.- +.+.++..+. .|-++.|.+|-.+-+..++.+++.- ..+ ..+.+++
T Consensus 113 i~~k~~~lv~AV~GaGKTEM-if~~i~~al~----------~G~~vciASPRvDVclEl~~Rlk~a--F~~--~~I~~Ly 177 (441)
T COG4098 113 IKQKEDTLVWAVTGAGKTEM-IFQGIEQALN----------QGGRVCIASPRVDVCLELYPRLKQA--FSN--CDIDLLY 177 (441)
T ss_pred HHhcCcEEEEEecCCCchhh-hHHHHHHHHh----------cCCeEEEecCcccchHHHHHHHHHh--hcc--CCeeeEe
Confidence 45678999999999999953 3455666555 3567899999999998888877643 333 5677889
Q ss_pred CCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccC
Q psy7786 84 GGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGD 137 (252)
Q Consensus 84 g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de 137 (252)
|+++..-+ . ..++.+.++.... +....+++.||
T Consensus 178 g~S~~~fr------~--------------plvVaTtHQLlrF-k~aFD~liIDE 210 (441)
T COG4098 178 GDSDSYFR------A--------------PLVVATTHQLLRF-KQAFDLLIIDE 210 (441)
T ss_pred cCCchhcc------c--------------cEEEEehHHHHHH-HhhccEEEEec
Confidence 98653322 1 1244455554443 34477888777
No 165
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=98.25 E-value=4.7e-06 Score=76.12 Aligned_cols=74 Identities=26% Similarity=0.274 Sum_probs=63.5
Q ss_pred CCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 164 IKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243 (252)
Q Consensus 164 ~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l 243 (252)
-..|+.+|....+.+..|+ +..+.||+|||+++.+|++...+. +.++.|++||++||.|.++++..+
T Consensus 54 g~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----------G~~V~VvTpt~~LA~qdae~~~~l 120 (745)
T TIGR00963 54 GMRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT-----------GKGVHVVTVNDYLAQRDAEWMGQV 120 (745)
T ss_pred CCCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh-----------CCCEEEEcCCHHHHHHHHHHHHHH
Confidence 4479999999888887776 899999999999999999644432 346999999999999999999999
Q ss_pred HhhCCCC
Q psy7786 244 CAALPIG 250 (252)
Q Consensus 244 ~~~~~i~ 250 (252)
.+.+|++
T Consensus 121 ~~~LGLs 127 (745)
T TIGR00963 121 YRFLGLS 127 (745)
T ss_pred hccCCCe
Confidence 9999875
No 166
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.23 E-value=4.1e-06 Score=77.17 Aligned_cols=80 Identities=19% Similarity=0.210 Sum_probs=65.7
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeC
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIG 84 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g 84 (252)
.+|+ ++.-+||+|||+...+|++...+. |-++-+++||--||.|=++.+..+-+.+| +++.+..|
T Consensus 93 ~~G~--iaEm~TGEGKTLvA~l~a~l~al~-----------G~~v~vvT~neyLA~Rd~e~~~~~~~~LG--l~vg~i~~ 157 (796)
T PRK12906 93 HEGN--IAEMKTGEGKTLTATLPVYLNALT-----------GKGVHVVTVNEYLSSRDATEMGELYRWLG--LTVGLNLN 157 (796)
T ss_pred hcCC--cccccCCCCCcHHHHHHHHHHHHc-----------CCCeEEEeccHHHHHhhHHHHHHHHHhcC--CeEEEeCC
Confidence 4555 788899999999999999877765 55699999999999999999999999998 89998888
Q ss_pred CcccCcchhhhhhcccc
Q psy7786 85 GVPMNQSLDVIKKGIQY 101 (252)
Q Consensus 85 ~~~~~~~~~~l~~~~~i 101 (252)
+.+.+++.+.. .+||
T Consensus 158 ~~~~~~r~~~y--~~dI 172 (796)
T PRK12906 158 SMSPDEKRAAY--NCDI 172 (796)
T ss_pred CCCHHHHHHHh--cCCC
Confidence 86666554444 3455
No 167
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=98.20 E-value=9.5e-06 Score=74.56 Aligned_cols=72 Identities=25% Similarity=0.315 Sum_probs=60.1
Q ss_pred CChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHh
Q psy7786 166 KPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCA 245 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~ 245 (252)
.|+.+|.........| .++.++||+|||+++++|.+...+. +..++|++|+++||.|.++++..+.+
T Consensus 70 rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~-----------g~~V~VVTpn~yLA~Rdae~m~~l~~ 136 (762)
T TIGR03714 70 FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALT-----------GKGAMLVTTNDYLAKRDAEEMGPVYE 136 (762)
T ss_pred CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhc-----------CCceEEeCCCHHHHHHHHHHHHHHHh
Confidence 7888887766665555 6999999999999999997654432 44699999999999999999999999
Q ss_pred hCCCC
Q psy7786 246 ALPIG 250 (252)
Q Consensus 246 ~~~i~ 250 (252)
.+|++
T Consensus 137 ~LGLs 141 (762)
T TIGR03714 137 WLGLT 141 (762)
T ss_pred hcCCc
Confidence 99875
No 168
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.18 E-value=5.9e-06 Score=76.27 Aligned_cols=110 Identities=19% Similarity=0.205 Sum_probs=78.3
Q ss_pred CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCcc
Q psy7786 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVP 87 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~~ 87 (252)
+.-++..+||.|||+++.+|+.-..+. |..+-|++++..||.+-.+++..+-+.+| +++.+..++.+
T Consensus 90 ~G~IaEm~TGEGKTL~a~l~ayl~aL~-----------G~~VhVvT~NdyLA~RD~e~m~pvy~~LG--Lsvg~i~~~~~ 156 (870)
T CHL00122 90 DGKIAEMKTGEGKTLVATLPAYLNALT-----------GKGVHIVTVNDYLAKRDQEWMGQIYRFLG--LTVGLIQEGMS 156 (870)
T ss_pred CCccccccCCCCchHHHHHHHHHHHhc-----------CCceEEEeCCHHHHHHHHHHHHHHHHHcC--CceeeeCCCCC
Confidence 345889999999999999999644433 45689999999999999999999999999 88888888877
Q ss_pred cCcchhhhhhcccccCCccccccCCc-----cccCCCh-hHHHHHhhhhceeeccCC
Q psy7786 88 MNQSLDVIKKGIQYNDPIKTSWRAPR-----CILSLPD-QVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 88 ~~~~~~~l~~~~~i~~~i~t~~~~p~-----~l~~~~~-~~~~~l~~~~~~~V~de~ 138 (252)
..++.+... +|| .|++.. .|-+... .......+.+.+.+.||.
T Consensus 157 ~~err~aY~--~DI------tYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEv 205 (870)
T CHL00122 157 SEERKKNYL--KDI------TYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEV 205 (870)
T ss_pred hHHHHHhcC--CCC------EecCCccccccchhhccCcChHHhhccccceeeeecc
Confidence 665555444 455 344443 3333332 222223345777777774
No 169
>KOG0948|consensus
Probab=98.18 E-value=8e-06 Score=73.45 Aligned_cols=155 Identities=18% Similarity=0.216 Sum_probs=97.3
Q ss_pred cccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeee
Q psy7786 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLA 82 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~ 82 (252)
.+-++..+++.|-|-+|||...--.+-+.+.. .-|++|-+|-++|.+|-|.++.. +.- -+...
T Consensus 140 Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~-----------kQRVIYTSPIKALSNQKYREl~~--EF~----DVGLM 202 (1041)
T KOG0948|consen 140 CIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE-----------KQRVIYTSPIKALSNQKYRELLE--EFK----DVGLM 202 (1041)
T ss_pred hhcCCceEEEEeecCCCcchHHHHHHHHHHHh-----------cCeEEeeChhhhhcchhHHHHHH--Hhc----cccee
Confidence 46688999999999999997655555555533 23699999999999999886643 232 34557
Q ss_pred eCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC------------------CCCcc-
Q psy7786 83 IGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD------------------VPPAC- 143 (252)
Q Consensus 83 ~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~------------------~~~~~- 143 (252)
+|+.+.+....-| +. |-.+|-++.-+....++. +..+|-||- +|+.+
T Consensus 203 TGDVTInP~ASCL---------VM----TTEILRsMLYRGSEvmrE-VaWVIFDEIHYMRDkERGVVWEETIIllP~~vr 268 (1041)
T KOG0948|consen 203 TGDVTINPDASCL---------VM----TTEILRSMLYRGSEVMRE-VAWVIFDEIHYMRDKERGVVWEETIILLPDNVR 268 (1041)
T ss_pred ecceeeCCCCcee---------ee----HHHHHHHHHhccchHhhe-eeeEEeeeehhccccccceeeeeeEEeccccce
Confidence 8887776554322 12 245677777777777776 677776652 23222
Q ss_pred cccccCCCCH--HHHHHH---HHCC------CCCChHHHHhhhhhhhcCCcEEEEc
Q psy7786 144 CSFRLMKLPE--SLVRAL---EAKG------IKKPTPIQVQGIPAALSGRDIIGIA 188 (252)
Q Consensus 144 ~~~~~~~l~~--~l~~~l---~~~~------~~~p~~iQ~~~~p~~~~~~~~~~~~ 188 (252)
.-|....++. +..+++ ++.- -..|||.|.+.+|+.-+|-..++..
T Consensus 269 ~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDe 324 (1041)
T KOG0948|consen 269 FVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDE 324 (1041)
T ss_pred EEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEec
Confidence 1122222222 222333 3322 2379999999999877665555544
No 170
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.15 E-value=1.6e-06 Score=81.40 Aligned_cols=107 Identities=17% Similarity=0.151 Sum_probs=69.5
Q ss_pred cccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH-HHhCCCCcceee
Q psy7786 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY-CAALPIPLRTCL 81 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l-~~~~~~~~~~~~ 81 (252)
.+.+|..++++||||||||+.--..+-..+.. +-+++|.+|.++|.+|.+..+... ++. - =.+..
T Consensus 130 ~Ler~esVlV~ApTssGKTvVaeyAi~~al~~-----------~qrviYTsPIKALsNQKyrdl~~~fgdv-~--~~vGL 195 (1041)
T COG4581 130 ILERGESVLVCAPTSSGKTVVAEYAIALALRD-----------GQRVIYTSPIKALSNQKYRDLLAKFGDV-A--DMVGL 195 (1041)
T ss_pred HHhCCCcEEEEccCCCCcchHHHHHHHHHHHc-----------CCceEeccchhhhhhhHHHHHHHHhhhh-h--hhccc
Confidence 35689999999999999998755554444432 445999999999999998776533 322 0 13456
Q ss_pred eeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccC
Q psy7786 82 AIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGD 137 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de 137 (252)
.+|+.+.+.... + .+.|| .+|-++.-+....++. +..+|-||
T Consensus 196 ~TGDv~IN~~A~-------c-----lvMTT-EILRnMlyrg~~~~~~-i~~ViFDE 237 (1041)
T COG4581 196 MTGDVSINPDAP-------C-----LVMTT-EILRNMLYRGSESLRD-IEWVVFDE 237 (1041)
T ss_pred eecceeeCCCCc-------e-----EEeeH-HHHHHHhccCcccccc-cceEEEEe
Confidence 788866544321 1 11233 5566666565555665 77777666
No 171
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.15 E-value=8.5e-06 Score=73.96 Aligned_cols=107 Identities=18% Similarity=0.153 Sum_probs=76.6
Q ss_pred EEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCcccCc
Q psy7786 11 IGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQ 90 (252)
Q Consensus 11 ~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~~~~~ 90 (252)
++.-.||+|||+...+|++...+. |.++-+++||--||.|-++++..+-+.+| +++.+..++.+.++
T Consensus 95 VaEM~TGEGKTLvA~l~a~l~AL~-----------G~~VhvvT~NdyLA~RDae~m~~ly~~LG--Lsvg~i~~~~~~~e 161 (764)
T PRK12326 95 VIEMATGEGKTLAGAIAAAGYALQ-----------GRRVHVITVNDYLARRDAEWMGPLYEALG--LTVGWITEESTPEE 161 (764)
T ss_pred cccccCCCCHHHHHHHHHHHHHHc-----------CCCeEEEcCCHHHHHHHHHHHHHHHHhcC--CEEEEECCCCCHHH
Confidence 567889999999999999877654 55699999999999999999999999998 89998888876655
Q ss_pred chhhhhhcccccCCccccccCCccc-----cCCCh-hHHHHHhhhhceeeccCC
Q psy7786 91 SLDVIKKGIQYNDPIKTSWRAPRCI-----LSLPD-QVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 91 ~~~~l~~~~~i~~~i~t~~~~p~~l-----~~~~~-~~~~~l~~~~~~~V~de~ 138 (252)
+.+.. .+|| .|++...+ -+... .......+...+.+.||.
T Consensus 162 rr~aY--~~DI------tYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEv 207 (764)
T PRK12326 162 RRAAY--ACDV------TYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEA 207 (764)
T ss_pred HHHHH--cCCC------EEcCCcccccccchhhhccChHhhcCCccceeeecch
Confidence 54444 3566 35554332 22221 122223344677777764
No 172
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.14 E-value=4.2e-06 Score=77.29 Aligned_cols=56 Identities=25% Similarity=0.318 Sum_probs=47.3
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l 69 (252)
+.+|+.+++.||||||||++|++|++....... .+++|.++|+.|-.|+.+....+
T Consensus 31 ~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~----------~~viist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 31 LKGGEGLLIEAPTGTGKTLAYLLPALAYAREEG----------KKVIISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred HcCCCcEEEECCCCccHHHHHHHHHHHHHHHcC----------CcEEEECCCHHHHHHHHHhhcch
Confidence 456777999999999999999999998765543 46999999999999998877665
No 173
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.10 E-value=3.9e-05 Score=71.59 Aligned_cols=59 Identities=17% Similarity=0.063 Sum_probs=49.4
Q ss_pred cEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCC
Q psy7786 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALP 74 (252)
Q Consensus 9 d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~ 74 (252)
.+++.||||.|||.+.+.+....+.... ....+.+++.|+|.+.+++++.++......+
T Consensus 216 ~~vl~aPTG~GKT~asl~~a~~~~~~~~-------~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 216 LVVLEAPTGYGKTEASLILALALLDEKI-------KLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred cEEEEeCCCCChHHHHHHHHHHHhhccc-------cccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 7899999999999999999987765531 1367899999999999999999998765544
No 174
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.09 E-value=2.2e-05 Score=71.94 Aligned_cols=105 Identities=17% Similarity=0.279 Sum_probs=72.2
Q ss_pred CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCcc
Q psy7786 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVP 87 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~~ 87 (252)
+-.++.+.||||||..|+ .++...+.. |-++|+++|-.+|-.|+.+.++.. .| .++.+++++-+
T Consensus 218 ~~~Ll~GvTGSGKTEvYl-~~i~~~L~~----------GkqvLvLVPEI~Ltpq~~~rf~~r---Fg--~~v~vlHS~Ls 281 (730)
T COG1198 218 APFLLDGVTGSGKTEVYL-EAIAKVLAQ----------GKQVLVLVPEIALTPQLLARFKAR---FG--AKVAVLHSGLS 281 (730)
T ss_pred cceeEeCCCCCcHHHHHH-HHHHHHHHc----------CCEEEEEeccccchHHHHHHHHHH---hC--CChhhhcccCC
Confidence 467899999999999995 444444443 457999999999999998877643 34 56777888888
Q ss_pred cCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 88 MNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 88 ~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
..++.+..++- .. +....++.+-.-...-|++ +..+|.||.
T Consensus 282 ~~er~~~W~~~-------~~--G~~~vVIGtRSAlF~Pf~~-LGLIIvDEE 322 (730)
T COG1198 282 PGERYRVWRRA-------RR--GEARVVIGTRSALFLPFKN-LGLIIVDEE 322 (730)
T ss_pred hHHHHHHHHHH-------hc--CCceEEEEechhhcCchhh-ccEEEEecc
Confidence 77776666551 11 1233455554444555666 887777664
No 175
>KOG0950|consensus
Probab=98.02 E-value=1.7e-05 Score=73.04 Aligned_cols=78 Identities=19% Similarity=0.194 Sum_probs=60.7
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCL 81 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~ 81 (252)
|.+++++|.+..+||+-|||++.-+=++..++.-.+ .++.+.|-..-+..-...+..+....| +.+..
T Consensus 235 ~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr----------~~llilp~vsiv~Ek~~~l~~~~~~~G--~~ve~ 302 (1008)
T KOG0950|consen 235 PRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR----------NVLLILPYVSIVQEKISALSPFSIDLG--FPVEE 302 (1008)
T ss_pred hhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh----------ceeEecceeehhHHHHhhhhhhccccC--Ccchh
Confidence 567899999999999999999999999988887654 378888888777776677777777777 56665
Q ss_pred eeCCcccCcc
Q psy7786 82 AIGGVPMNQS 91 (252)
Q Consensus 82 ~~g~~~~~~~ 91 (252)
.+|+......
T Consensus 303 y~g~~~p~~~ 312 (1008)
T KOG0950|consen 303 YAGRFPPEKR 312 (1008)
T ss_pred hcccCCCCCc
Confidence 5676555444
No 176
>PHA02558 uvsW UvsW helicase; Provisional
Probab=98.01 E-value=2.2e-05 Score=70.19 Aligned_cols=71 Identities=25% Similarity=0.227 Sum_probs=56.4
Q ss_pred CCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 165 KKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 165 ~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
..|.+.|..+++..+.+.+.+++++||+|||..... +....... ...++||++||+++++|+.+.+++++
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~-l~~~~~~~---------~~~~vLilvpt~eL~~Q~~~~l~~~~ 182 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYL-LSRYYLEN---------YEGKVLIIVPTTSLVTQMIDDFVDYR 182 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHH-HHHHHHhc---------CCCeEEEEECcHHHHHHHHHHHHHhc
Confidence 479999999999999999999999999999986432 22222221 13489999999999999999999876
Q ss_pred h
Q psy7786 245 A 245 (252)
Q Consensus 245 ~ 245 (252)
.
T Consensus 183 ~ 183 (501)
T PHA02558 183 L 183 (501)
T ss_pred c
Confidence 3
No 177
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.01 E-value=2.9e-05 Score=70.47 Aligned_cols=64 Identities=23% Similarity=0.188 Sum_probs=52.8
Q ss_pred hhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH-hhCC
Q psy7786 176 PAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC-AALP 248 (252)
Q Consensus 176 p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~-~~~~ 248 (252)
.+...+..+++.++||+|||++|++|.+..+... .+.+++|.+||+++++|+.+.+..+. +.++
T Consensus 11 ~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~---------~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~ 75 (636)
T TIGR03117 11 TSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER---------PDQKIAIAVPTLALMGQLWSELERLTAEGLA 75 (636)
T ss_pred HHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc---------cCceEEEECCcHHHHHHHHHHHHHHHHhhcC
Confidence 3445678899999999999999999999876532 14689999999999999999999888 5443
No 178
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.00 E-value=4.7e-05 Score=72.32 Aligned_cols=85 Identities=21% Similarity=0.256 Sum_probs=66.4
Q ss_pred CHHHHHHHHHCCCCCChHHHHhhhh----hhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEc
Q psy7786 152 PESLVRALEAKGIKKPTPIQVQGIP----AALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIIC 227 (252)
Q Consensus 152 ~~~l~~~l~~~~~~~p~~iQ~~~~p----~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~ 227 (252)
++...+.+...+++ +.+.|..++. ....++++++.++||+|||.+|++|.+.... + +.+++|.|
T Consensus 232 ~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~----------~~~vvi~t 299 (850)
T TIGR01407 232 SSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-T----------EKPVVIST 299 (850)
T ss_pred cHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-C----------CCeEEEEe
Confidence 34566677777776 6688887664 5557889999999999999999999987544 1 34799999
Q ss_pred CcHHHHHHHHH-HHHHHHhhCC
Q psy7786 228 PSRELARQTHD-IIQYYCAALP 248 (252)
Q Consensus 228 ~tr~~a~~i~~-~l~~l~~~~~ 248 (252)
||+++.+|+.. .+..+.+.++
T Consensus 300 ~t~~Lq~Ql~~~~~~~l~~~~~ 321 (850)
T TIGR01407 300 NTKVLQSQLLEKDIPLLNEILN 321 (850)
T ss_pred CcHHHHHHHHHHHHHHHHHHcC
Confidence 99999999865 6777777655
No 179
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.96 E-value=2.1e-05 Score=73.16 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=52.0
Q ss_pred cccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 70 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~ 70 (252)
.+.+|+++++.||||||||++-+.|.+....... ...+.+|.+.|..-..|+.++++++.
T Consensus 25 ~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~--------~~~kIiy~sRThsQl~q~i~Elk~~~ 84 (705)
T TIGR00604 25 SLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP--------EVRKIIYASRTHSQLEQATEELRKLM 84 (705)
T ss_pred HhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc--------ccccEEEEcccchHHHHHHHHHHhhh
Confidence 4678999999999999999999999998765432 24689999999999999999999975
No 180
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.89 E-value=4.9e-05 Score=71.62 Aligned_cols=73 Identities=22% Similarity=0.226 Sum_probs=57.1
Q ss_pred CChHHHHhhh----hhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHH-HHHH
Q psy7786 166 KPTPIQVQGI----PAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT-HDII 240 (252)
Q Consensus 166 ~p~~iQ~~~~----p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i-~~~l 240 (252)
.+.+-|..+. .+...+..+++.+.||+|||++|++|.+... .+.+++|.||||++++|+ .+.+
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~------------~~~~vvI~t~T~~Lq~Ql~~~~i 312 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS------------DQRQIIVSVPTKILQDQIMAEEV 312 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc------------CCCcEEEEeCcHHHHHHHHHHHH
Confidence 3555666644 3334568899999999999999999988632 145799999999999999 5788
Q ss_pred HHHHhhCCCC
Q psy7786 241 QYYCAALPIG 250 (252)
Q Consensus 241 ~~l~~~~~i~ 250 (252)
..+++.++++
T Consensus 313 ~~l~~~~~~~ 322 (820)
T PRK07246 313 KAIQEVFHID 322 (820)
T ss_pred HHHHHhcCCc
Confidence 8888887764
No 181
>KOG0951|consensus
Probab=97.86 E-value=4.5e-05 Score=72.24 Aligned_cols=71 Identities=23% Similarity=0.239 Sum_probs=55.2
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHH-HHHHHhCCCCcceeeeeC
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII-QYYCAALPIPLRTCLAIG 84 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~-~~l~~~~~~~~~~~~~~g 84 (252)
...++++.||+|||||....+.++. . ....++++++|.-+.+..++..+ ++|++.+| .++....|
T Consensus 1158 ~nd~v~vga~~gsgkt~~ae~a~l~---~---------~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G--~~~~~l~g 1223 (1674)
T KOG0951|consen 1158 TNDNVLVGAPNGSGKTACAELALLR---P---------DTIGRAVYIAPLEEIADEQYRDWEKKFSKLLG--LRIVKLTG 1223 (1674)
T ss_pred ccceEEEecCCCCchhHHHHHHhcC---C---------ccceEEEEecchHHHHHHHHHHHHHhhccccC--ceEEecCC
Confidence 4678999999999999988888774 1 13568999999999998876554 67777766 78888888
Q ss_pred CcccCc
Q psy7786 85 GVPMNQ 90 (252)
Q Consensus 85 ~~~~~~ 90 (252)
..+...
T Consensus 1224 e~s~~l 1229 (1674)
T KOG0951|consen 1224 ETSLDL 1229 (1674)
T ss_pred ccccch
Confidence 766543
No 182
>PF13245 AAA_19: Part of AAA domain
Probab=97.85 E-value=0.00011 Score=47.96 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=35.4
Q ss_pred CCc-EEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q psy7786 7 SRD-IIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 66 (252)
Q Consensus 7 g~d-~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~ 66 (252)
+.+ +++.++.|||||....- .+..+...... .+-++++++||+..+.++.+.+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~-~i~~l~~~~~~------~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAA-RIAELLAARAD------PGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHH-HHHHHHHHhcC------CCCeEEEECCCHHHHHHHHHHH
Confidence 444 45599999999955433 33333332110 1447999999999999887776
No 183
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.85 E-value=5.8e-05 Score=69.99 Aligned_cols=107 Identities=19% Similarity=0.186 Sum_probs=76.0
Q ss_pred EEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCcccCc
Q psy7786 11 IGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQ 90 (252)
Q Consensus 11 ~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~~~~~ 90 (252)
++.-+||-|||++..+|+.-..+. |..+-|++++--||.+-.+++..+-+.+| +++.+..++.+..+
T Consensus 102 IAEM~TGEGKTL~atlpaylnAL~-----------GkgVhVVTvNdYLA~RDae~m~~vy~~LG--Ltvg~i~~~~~~~e 168 (939)
T PRK12902 102 IAEMKTGEGKTLVATLPSYLNALT-----------GKGVHVVTVNDYLARRDAEWMGQVHRFLG--LSVGLIQQDMSPEE 168 (939)
T ss_pred eeeecCCCChhHHHHHHHHHHhhc-----------CCCeEEEeCCHHHHHhHHHHHHHHHHHhC--CeEEEECCCCChHH
Confidence 788999999999999999865554 45689999999999999999999999999 88888877755544
Q ss_pred chhhhhhcccccCCccccccCCccc-----cCCChh-HHHHHhhhhceeeccCC
Q psy7786 91 SLDVIKKGIQYNDPIKTSWRAPRCI-----LSLPDQ-VHDIIRRNLRILVEGDD 138 (252)
Q Consensus 91 ~~~~l~~~~~i~~~i~t~~~~p~~l-----~~~~~~-~~~~l~~~~~~~V~de~ 138 (252)
+... -.+|| .|+++..+ .+.... ......+.+.+.+.||.
T Consensus 169 rr~a--Y~~DI------tYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEv 214 (939)
T PRK12902 169 RKKN--YACDI------TYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEV 214 (939)
T ss_pred HHHh--cCCCe------EEecCCcccccchhhhhcccccccccCccceEEEecc
Confidence 3332 34666 45666554 222221 11123345777777764
No 184
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.84 E-value=9.1e-05 Score=57.06 Aligned_cols=76 Identities=39% Similarity=0.482 Sum_probs=63.4
Q ss_pred CCCCCChHHHHhhhhhhhcC-CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q psy7786 162 KGIKKPTPIQVQGIPAALSG-RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 240 (252)
Q Consensus 162 ~~~~~p~~iQ~~~~p~~~~~-~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l 240 (252)
.+...+.+.|..++...... +..++.+++|+|||..+...++..+.... ..++++++|++.++.++.+.+
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~---------~~~~l~~~p~~~~~~~~~~~~ 74 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK---------GKRVLVLVPTRELAEQWAEEL 74 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC---------CCcEEEEeCCHHHHHHHHHHH
Confidence 34567899999999999988 99999999999999988888877654321 346999999999999999999
Q ss_pred HHHHhh
Q psy7786 241 QYYCAA 246 (252)
Q Consensus 241 ~~l~~~ 246 (252)
.++...
T Consensus 75 ~~~~~~ 80 (201)
T smart00487 75 KKLGPS 80 (201)
T ss_pred HHHhcc
Confidence 887754
No 185
>PHA02653 RNA helicase NPH-II; Provisional
Probab=97.82 E-value=6.8e-05 Score=68.82 Aligned_cols=75 Identities=15% Similarity=0.003 Sum_probs=55.7
Q ss_pred ChHHHHhhhhhhhcCCcEEEEccCCCchhHH---------hHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHH
Q psy7786 167 PTPIQVQGIPAALSGRDIIGIAFTGSGKTLV---------FVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237 (252)
Q Consensus 167 p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~---------~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~ 237 (252)
+..+|.+.++....++++++.++||+|||.+ |+++.+..+..-. ......+++|.+|||++|.|+.
T Consensus 165 ~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~-----~~~~~~~ilvt~PrreLa~qi~ 239 (675)
T PHA02653 165 QPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID-----PNFIERPIVLSLPRVALVRLHS 239 (675)
T ss_pred hHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc-----cccCCcEEEEECcHHHHHHHHH
Confidence 4468999999999999999999999999986 3334443321100 0123468999999999999999
Q ss_pred HHHHHHHhh
Q psy7786 238 DIIQYYCAA 246 (252)
Q Consensus 238 ~~l~~l~~~ 246 (252)
..+.+...+
T Consensus 240 ~~i~~~vg~ 248 (675)
T PHA02653 240 ITLLKSLGF 248 (675)
T ss_pred HHHHHHhCc
Confidence 888765544
No 186
>COG1204 Superfamily II helicase [General function prediction only]
Probab=97.81 E-value=9.9e-05 Score=68.70 Aligned_cols=88 Identities=31% Similarity=0.335 Sum_probs=66.5
Q ss_pred CCHHHHHHHHHCCCCCChH-HHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCc
Q psy7786 151 LPESLVRALEAKGIKKPTP-IQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPS 229 (252)
Q Consensus 151 l~~~l~~~l~~~~~~~p~~-iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~t 229 (252)
..+.+.+.+...++....+ +|....+....+.|++++++||+|||.-..+.+++.+.+. +.+++..||+
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~----------~~k~vYivPl 85 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG----------GGKVVYIVPL 85 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc----------CCcEEEEeCh
Confidence 5566666666666644444 4444445566779999999999999999999999887763 4579999999
Q ss_pred HHHHHHHHHHHHHHHhhCCC
Q psy7786 230 RELARQTHDIIQYYCAALPI 249 (252)
Q Consensus 230 r~~a~~i~~~l~~l~~~~~i 249 (252)
|.||++.++.+++ -+.+|+
T Consensus 86 kALa~Ek~~~~~~-~~~~Gi 104 (766)
T COG1204 86 KALAEEKYEEFSR-LEELGI 104 (766)
T ss_pred HHHHHHHHHHhhh-HHhcCC
Confidence 9999999999983 334443
No 187
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=97.80 E-value=8.8e-05 Score=69.15 Aligned_cols=73 Identities=23% Similarity=0.212 Sum_probs=59.0
Q ss_pred CCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 165 KKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 165 ~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
..|..+|...--++ ...-+..+.||+|||+++.+|.+...+. +..+.|++||++||.|.++++..+.
T Consensus 81 ~~~ydvQliGg~~L--h~G~Iaem~TGeGKTL~a~Lpa~~~al~-----------G~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 81 LRHFDVQLIGGMVL--HEGNIAEMRTGEGKTLVATLPAYLNAIS-----------GRGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred CCcchHHHhhhhhh--ccCccccccCCCCchHHHHHHHHHHHhc-----------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 36777777543333 4555889999999999999999976543 3459999999999999999999999
Q ss_pred hhCCCC
Q psy7786 245 AALPIG 250 (252)
Q Consensus 245 ~~~~i~ 250 (252)
+.+|++
T Consensus 148 ~~lGLt 153 (896)
T PRK13104 148 EFLGLT 153 (896)
T ss_pred cccCce
Confidence 998874
No 188
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=97.79 E-value=9.2e-05 Score=63.33 Aligned_cols=63 Identities=27% Similarity=0.378 Sum_probs=52.6
Q ss_pred HHhhhhhhhcCCc--EEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHhhC
Q psy7786 171 QVQGIPAALSGRD--IIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247 (252)
Q Consensus 171 Q~~~~p~~~~~~~--~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~~~ 247 (252)
|.++++.+..+.+ +++.++||+|||.+++++.+.. ..++++++|+++++++.++.++++...+
T Consensus 2 Q~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~--------------~~~~~~~~P~~aL~~~~~~~~~~~~~~~ 66 (357)
T TIGR03158 2 QVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG--------------ENDTIALYPTNALIEDQTEAIKEFVDVF 66 (357)
T ss_pred HHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc--------------CCCEEEEeChHHHHHHHHHHHHHHHHhc
Confidence 6778888888764 7889999999999999988741 2358999999999999999999887654
No 189
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=97.78 E-value=5.8e-05 Score=73.00 Aligned_cols=54 Identities=22% Similarity=0.246 Sum_probs=42.8
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l 69 (252)
.+..+++.+||||||.+. +.++.+++... ...++|+|+|+++|+.|..+.++.+
T Consensus 433 ~r~~Ll~maTGSGKT~ta-i~li~~L~~~~--------~~~rVLfLvDR~~L~~Qa~~~F~~~ 486 (1123)
T PRK11448 433 QREILLAMATGTGKTRTA-IALMYRLLKAK--------RFRRILFLVDRSALGEQAEDAFKDT 486 (1123)
T ss_pred cCCeEEEeCCCCCHHHHH-HHHHHHHHhcC--------ccCeEEEEecHHHHHHHHHHHHHhc
Confidence 367999999999999873 44555555432 2458999999999999999988876
No 190
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=97.75 E-value=5.9e-05 Score=64.55 Aligned_cols=52 Identities=23% Similarity=0.080 Sum_probs=44.7
Q ss_pred cEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 183 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243 (252)
Q Consensus 183 ~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l 243 (252)
++++.++||+|||.+++.+.+..+... ...++++++|+|+++.|+++.++.+
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~---------~~~~ii~v~P~~~L~~q~~~~l~~~ 52 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ---------KADRVIIALPTRATINAMYRRAKEL 52 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC---------CCCeEEEEeehHHHHHHHHHHHHHH
Confidence 578999999999999999998765432 2568999999999999999999886
No 191
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.73 E-value=0.00013 Score=67.49 Aligned_cols=66 Identities=24% Similarity=0.287 Sum_probs=54.6
Q ss_pred CChHHHHhhhhhhhcC---CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 166 KPTPIQVQGIPAALSG---RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 242 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~~---~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~ 242 (252)
.+++.|..++.....+ .+.++.++||+|||..|+.++...+. .+.++||++||++++.|+.+.+++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~-----------~g~~vLvLvPt~~L~~Q~~~~l~~ 212 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA-----------QGKQALVLVPEIALTPQMLARFRA 212 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH-----------cCCeEEEEeCcHHHHHHHHHHHHH
Confidence 4788999999888763 78999999999999999876554332 156899999999999999998875
No 192
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=97.69 E-value=0.00022 Score=62.85 Aligned_cols=96 Identities=28% Similarity=0.376 Sum_probs=83.2
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHhhhhh-hhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEE
Q psy7786 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA-ALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG 223 (252)
Q Consensus 145 ~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~-~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 223 (252)
...++.+++++.+.+...|++...|+|..++.+ ++.|.|.++.+.|++|||+.--+.-+.+++. .+.+.
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~----------~g~Km 264 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS----------GGKKM 264 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh----------CCCeE
Confidence 356788999999999999999999999999966 6799999999999999999777777766654 25679
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhCCCC
Q psy7786 224 LIICPSRELARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 224 LIf~~tr~~a~~i~~~l~~l~~~~~i~ 250 (252)
|.++|-..+|+|=++.+++--+.++++
T Consensus 265 lfLvPLVALANQKy~dF~~rYs~Lglk 291 (830)
T COG1202 265 LFLVPLVALANQKYEDFKERYSKLGLK 291 (830)
T ss_pred EEEehhHHhhcchHHHHHHHhhcccce
Confidence 999999999999999999887888765
No 193
>KOG0952|consensus
Probab=97.67 E-value=0.00015 Score=67.65 Aligned_cols=86 Identities=28% Similarity=0.256 Sum_probs=66.3
Q ss_pred CCCCChHHHHhhhhhhhc-CCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 163 GIKKPTPIQVQGIPAALS-GRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241 (252)
Q Consensus 163 ~~~~p~~iQ~~~~p~~~~-~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~ 241 (252)
++.....+|+.++|.... +.++++|++||+|||..+++.+++.+.+++.. -.....+.+++..+|++.||.++.+.+.
T Consensus 107 ~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~-~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 107 SFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQ-GDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred cHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccc-cccccCCceEEEEechHHHHHHHHHHHh
Confidence 455667899999988774 57999999999999999999999988763322 2234456789999999999999887776
Q ss_pred HHHhhCCC
Q psy7786 242 YYCAALPI 249 (252)
Q Consensus 242 ~l~~~~~i 249 (252)
+--..+|+
T Consensus 186 kkl~~~gi 193 (1230)
T KOG0952|consen 186 KKLAPLGI 193 (1230)
T ss_pred hhcccccc
Confidence 54443443
No 194
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.66 E-value=0.00041 Score=64.89 Aligned_cols=82 Identities=23% Similarity=0.212 Sum_probs=67.2
Q ss_pred HHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHH
Q psy7786 156 VRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQ 235 (252)
Q Consensus 156 ~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~ 235 (252)
.+-+.+..-..|+..|+.+....+.|+.+.+.||||.|||..-++-.+... .++.++++.+||+.|+.|
T Consensus 72 ~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a-----------~kgkr~yii~PT~~Lv~Q 140 (1187)
T COG1110 72 EEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA-----------KKGKRVYIIVPTTTLVRQ 140 (1187)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH-----------hcCCeEEEEecCHHHHHH
Confidence 444555545589999999999999999999999999999987655554321 135689999999999999
Q ss_pred HHHHHHHHHhhCC
Q psy7786 236 THDIIQYYCAALP 248 (252)
Q Consensus 236 i~~~l~~l~~~~~ 248 (252)
+++.++++++..+
T Consensus 141 ~~~kl~~~~e~~~ 153 (1187)
T COG1110 141 VYERLKKFAEDAG 153 (1187)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999998776
No 195
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=97.60 E-value=0.00016 Score=63.69 Aligned_cols=49 Identities=27% Similarity=0.338 Sum_probs=37.0
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l 69 (252)
++..++..|||+|||..++--+-. + ...+|||+||++|+.|-.+.+...
T Consensus 55 ~~~gvivlpTGaGKT~va~~~~~~-~-------------~~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 55 ERRGVIVLPTGAGKTVVAAEAIAE-L-------------KRSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCceEEEeCCCCCHHHHHHHHHHH-h-------------cCCEEEEECcHHHHHHHHHHHHHh
Confidence 788999999999999766544321 1 223999999999999987555443
No 196
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=97.57 E-value=0.0009 Score=63.74 Aligned_cols=198 Identities=19% Similarity=0.200 Sum_probs=118.0
Q ss_pred cEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCccc
Q psy7786 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVPM 88 (252)
Q Consensus 9 d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~~~ 88 (252)
|=++|+--|-|||...+=.++..++. |.|+.+++||--||+|=++.++. +..|+++++..+..=.+.
T Consensus 617 DRLiCGDVGFGKTEVAmRAAFkAV~~-----------GKQVAvLVPTTlLA~QHy~tFke--RF~~fPV~I~~LSRF~s~ 683 (1139)
T COG1197 617 DRLICGDVGFGKTEVAMRAAFKAVMD-----------GKQVAVLVPTTLLAQQHYETFKE--RFAGFPVRIEVLSRFRSA 683 (1139)
T ss_pred hheeecCcCCcHHHHHHHHHHHHhcC-----------CCeEEEEcccHHhHHHHHHHHHH--HhcCCCeeEEEecccCCH
Confidence 77999999999998777666655543 67899999999999999888874 344556898877766666
Q ss_pred Ccchhhhhh---c-ccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHHHCCC
Q psy7786 89 NQSLDVIKK---G-IQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGI 164 (252)
Q Consensus 89 ~~~~~~l~~---~-~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~~~~~ 164 (252)
+++.+.++. | +||+ |.| |+|++- ...|++ +..+|.||. +..|..+. +.+++...
T Consensus 684 kE~~~il~~la~G~vDIv--IGT-----HrLL~k----dv~Fkd-LGLlIIDEE--------qRFGVk~K--EkLK~Lr~ 741 (1139)
T COG1197 684 KEQKEILKGLAEGKVDIV--IGT-----HRLLSK----DVKFKD-LGLLIIDEE--------QRFGVKHK--EKLKELRA 741 (1139)
T ss_pred HHHHHHHHHHhcCCccEE--Eec-----hHhhCC----CcEEec-CCeEEEech--------hhcCccHH--HHHHHHhc
Confidence 666555543 3 5653 444 233321 233444 888888886 34443332 23333210
Q ss_pred ------CCChHHHHhhhhhhhcC-CcEEEEccCCCchh--HHhH----HHHHHHHHhhhccCCCCCCCCcEEEEEcCcHH
Q psy7786 165 ------KKPTPIQVQGIPAALSG-RDIIGIAFTGSGKT--LVFV----LPILMFCLEQETKLPFLPGEGPYGLIICPSRE 231 (252)
Q Consensus 165 ------~~p~~iQ~~~~p~~~~~-~~~~~~~~~g~gKt--~~~~----~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~ 231 (252)
...|||=+ ++...+.| +|+.+++.+..++- -.|+ -..+......+. ..+.|+-.+.|..+
T Consensus 742 ~VDvLTLSATPIPR-TL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireAI~REl------~RgGQvfYv~NrV~ 814 (1139)
T COG1197 742 NVDVLTLSATPIPR-TLNMSLSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREAILREL------LRGGQVFYVHNRVE 814 (1139)
T ss_pred cCcEEEeeCCCCcc-hHHHHHhcchhhhhccCCCCCCcceEEEEecCChHHHHHHHHHHH------hcCCEEEEEecchh
Confidence 01112111 12222333 55555554433320 0111 112222222221 34789999999999
Q ss_pred HHHHHHHHHHHHHhhCC
Q psy7786 232 LARQTHDIIQYYCAALP 248 (252)
Q Consensus 232 ~a~~i~~~l~~l~~~~~ 248 (252)
.-+++++.|+.+.+...
T Consensus 815 ~Ie~~~~~L~~LVPEar 831 (1139)
T COG1197 815 SIEKKAERLRELVPEAR 831 (1139)
T ss_pred hHHHHHHHHHHhCCceE
Confidence 99999999999877654
No 197
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.53 E-value=0.00018 Score=66.45 Aligned_cols=55 Identities=27% Similarity=0.248 Sum_probs=42.3
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 70 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~ 70 (252)
++..++..+||||||++.+.-+-. +.... ...++|+|+|+++|..|..+.++.++
T Consensus 263 ~~~gli~~~TGsGKT~t~~~la~~-l~~~~--------~~~~vl~lvdR~~L~~Q~~~~f~~~~ 317 (667)
T TIGR00348 263 ERGGLIWHTQGSGKTLTMLFAARK-ALELL--------KNPKVFFVVDRRELDYQLMKEFQSLQ 317 (667)
T ss_pred CceeEEEEecCCCccHHHHHHHHH-HHhhc--------CCCeEEEEECcHHHHHHHHHHHHhhC
Confidence 357899999999999776544432 32222 36789999999999999999988774
No 198
>KOG0349|consensus
Probab=97.52 E-value=6e-05 Score=64.06 Aligned_cols=67 Identities=36% Similarity=0.448 Sum_probs=61.3
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhh
Q psy7786 144 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQE 210 (252)
Q Consensus 144 ~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~ 210 (252)
..|.++|.-+++-....++.+..|+.+|..++|..+.|-|++..+.+|+|||-+|.+|+++-+.+..
T Consensus 2 ~af~e~gv~pel~~a~~e~dw~lptdvqaeaiplilgggdvlmaaetgsgktgaf~lpilqiv~etl 68 (725)
T KOG0349|consen 2 TAFEEFGVLPELGMATDELDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWETL 68 (725)
T ss_pred cchHhhCcchHhhhhhhhhccccccccccccccEEecCCcEEEEeccCCCCccceehhhHHHHHHHH
Confidence 3588999999998888999999999999999999999999999999999999999999998777543
No 199
>KOG0947|consensus
Probab=97.37 E-value=7.3e-05 Score=69.12 Aligned_cols=102 Identities=19% Similarity=0.264 Sum_probs=72.7
Q ss_pred cccCCCcEEEEcCCCchHHHH--hHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 3 TYRNSRDIIGIAFTGSGKTLV--FVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~a--~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
.+.+|-.+.+.|.|-+|||+. |.+.+-|. .+.+++|-+|-++|.+|-+..++.- .+ -+.
T Consensus 308 ~lerg~SVFVAAHTSAGKTvVAEYAialaq~-------------h~TR~iYTSPIKALSNQKfRDFk~t---F~---Dvg 368 (1248)
T KOG0947|consen 308 HLERGDSVFVAAHTSAGKTVVAEYAIALAQK-------------HMTRTIYTSPIKALSNQKFRDFKET---FG---DVG 368 (1248)
T ss_pred HHHcCCeEEEEecCCCCcchHHHHHHHHHHh-------------hccceEecchhhhhccchHHHHHHh---cc---ccc
Confidence 467899999999999999975 44444332 3678999999999999988777643 33 123
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccC
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGD 137 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de 137 (252)
.++|+.........+ |.| -.+|-+|.-+..+..+. +.++|-||
T Consensus 369 LlTGDvqinPeAsCL---------IMT----TEILRsMLYrgadliRD-vE~VIFDE 411 (1248)
T KOG0947|consen 369 LLTGDVQINPEASCL---------IMT----TEILRSMLYRGADLIRD-VEFVIFDE 411 (1248)
T ss_pred eeecceeeCCCcceE---------eeh----HHHHHHHHhcccchhhc-cceEEEee
Confidence 688987665553322 222 45677777777777777 88888776
No 200
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=97.31 E-value=0.00055 Score=67.70 Aligned_cols=57 Identities=28% Similarity=0.195 Sum_probs=44.3
Q ss_pred EEccCCCchhHHhHHHHHHHHHhhhccCC--CCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 186 GIAFTGSGKTLVFVLPILMFCLEQETKLP--FLPGEGPYGLIICPSRELARQTHDIIQY 242 (252)
Q Consensus 186 ~~~~~g~gKt~~~~~~~l~~i~~~~~~~~--~~~~~~~~~LIf~~tr~~a~~i~~~l~~ 242 (252)
++++||||||.++.+|.+..++.+..... .....+.++|+++|+|+|+.|+.+.++.
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~ 59 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQI 59 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHH
Confidence 46899999999999999999886431100 0112357899999999999999999875
No 201
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=97.30 E-value=0.00065 Score=63.99 Aligned_cols=62 Identities=19% Similarity=0.149 Sum_probs=48.3
Q ss_pred hhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHH-HHHhhC
Q psy7786 175 IPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ-YYCAAL 247 (252)
Q Consensus 175 ~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~-~l~~~~ 247 (252)
+....+++++++.++||+|||..+.++++.... ...+++|..|||++|.++++.+. .++..+
T Consensus 14 ~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~-----------~~~~ilvlqPrR~aA~qia~rva~~l~~~~ 76 (812)
T PRK11664 14 LTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG-----------INGKIIMLEPRRLAARNVAQRLAEQLGEKP 76 (812)
T ss_pred HHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC-----------cCCeEEEECChHHHHHHHHHHHHHHhCccc
Confidence 344556789999999999999999888885321 13489999999999999999884 444444
No 202
>PRK13766 Hef nuclease; Provisional
Probab=97.30 E-value=0.0011 Score=62.75 Aligned_cols=68 Identities=24% Similarity=0.265 Sum_probs=55.5
Q ss_pred CChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 166 KPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
.|...|.......+.+ +.+++.++|.|||..+++.+...+.. .+.++||+|||+.+++|..+.++++.
T Consensus 15 ~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~----------~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 82 (773)
T PRK13766 15 EARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK----------KGGKVLILAPTKPLVEQHAEFFRKFL 82 (773)
T ss_pred CccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh----------CCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 5677888877767766 89999999999999888777765521 25689999999999999999998764
No 203
>KOG0353|consensus
Probab=97.27 E-value=0.00089 Score=56.20 Aligned_cols=84 Identities=26% Similarity=0.402 Sum_probs=69.8
Q ss_pred ccCCCCHHHHHHHHHCC-CCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEE
Q psy7786 147 RLMKLPESLVRALEAKG-IKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLI 225 (252)
Q Consensus 147 ~~~~l~~~l~~~l~~~~-~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LI 225 (252)
.+.+.+.+..+++.... ++...|.|..++.+++.+.|.+++.++|.||.++|-+|.+. ....+||
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~--------------adg~alv 139 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALC--------------ADGFALV 139 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHh--------------cCCceEe
Confidence 35667888877776653 55678899999999999999999999999999999999984 2456999
Q ss_pred EcCcHHHHHHHHHHHHHHH
Q psy7786 226 ICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 226 f~~tr~~a~~i~~~l~~l~ 244 (252)
+||...+.+..--.|+.++
T Consensus 140 i~plislmedqil~lkqlg 158 (695)
T KOG0353|consen 140 ICPLISLMEDQILQLKQLG 158 (695)
T ss_pred echhHHHHHHHHHHHHHhC
Confidence 9999999988777777654
No 204
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.23 E-value=0.0015 Score=54.18 Aligned_cols=74 Identities=18% Similarity=0.113 Sum_probs=56.0
Q ss_pred CChHHHHhhh----hhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 166 KPTPIQVQGI----PAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241 (252)
Q Consensus 166 ~p~~iQ~~~~----p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~ 241 (252)
.|.+.|...+ .....+.+.++.++||+|||++++.|.+.+....... ....++++.++|..+.++....++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHHHHHHH
Confidence 3577787744 4455788999999999999999999999876543211 023478999999999999888787
Q ss_pred HHH
Q psy7786 242 YYC 244 (252)
Q Consensus 242 ~l~ 244 (252)
++.
T Consensus 83 ~~~ 85 (289)
T smart00488 83 KLM 85 (289)
T ss_pred hcc
Confidence 653
No 205
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.23 E-value=0.0015 Score=54.18 Aligned_cols=74 Identities=18% Similarity=0.113 Sum_probs=56.0
Q ss_pred CChHHHHhhh----hhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 166 KPTPIQVQGI----PAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241 (252)
Q Consensus 166 ~p~~iQ~~~~----p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~ 241 (252)
.|.+.|...+ .....+.+.++.++||+|||++++.|.+.+....... ....++++.++|..+.++....++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~-----~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER-----IQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc-----ccccceeEEeccHHHHHHHHHHHH
Confidence 3577787744 4455788999999999999999999999876543211 023478999999999999888787
Q ss_pred HHH
Q psy7786 242 YYC 244 (252)
Q Consensus 242 ~l~ 244 (252)
++.
T Consensus 83 ~~~ 85 (289)
T smart00489 83 KLM 85 (289)
T ss_pred hcc
Confidence 653
No 206
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.22 E-value=0.00053 Score=50.13 Aligned_cols=53 Identities=19% Similarity=0.247 Sum_probs=35.8
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~ 67 (252)
.+|+=.++--.+|+|||--.+--++..... .+.++|+|.|||.++..+++.++
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i~----------~~~rvLvL~PTRvva~em~~aL~ 54 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAIK----------RRLRVLVLAPTRVVAEEMYEALK 54 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHHH----------TT--EEEEESSHHHHHHHHHHTT
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHHH----------ccCeEEEecccHHHHHHHHHHHh
Confidence 455666778889999996665445544433 25679999999999988877664
No 207
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=97.16 E-value=0.0017 Score=60.60 Aligned_cols=74 Identities=24% Similarity=0.226 Sum_probs=58.7
Q ss_pred CCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 164 IKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243 (252)
Q Consensus 164 ~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l 243 (252)
-..|..+|....=++..| -+..+.||+|||+++.+|++-..+. +.++-|++||+.||.|.++++..+
T Consensus 79 g~~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~-----------G~~V~IvTpn~yLA~rd~e~~~~l 145 (830)
T PRK12904 79 GMRHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALT-----------GKGVHVVTVNDYLAKRDAEWMGPL 145 (830)
T ss_pred CCCCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHc-----------CCCEEEEecCHHHHHHHHHHHHHH
Confidence 347888888655555444 5888999999999999999643332 334779999999999999999999
Q ss_pred HhhCCCC
Q psy7786 244 CAALPIG 250 (252)
Q Consensus 244 ~~~~~i~ 250 (252)
.+.+|++
T Consensus 146 ~~~LGls 152 (830)
T PRK12904 146 YEFLGLS 152 (830)
T ss_pred HhhcCCe
Confidence 9999875
No 208
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.16 E-value=0.0014 Score=61.70 Aligned_cols=62 Identities=21% Similarity=0.144 Sum_probs=49.0
Q ss_pred hhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHH-HHHhhC
Q psy7786 175 IPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ-YYCAAL 247 (252)
Q Consensus 175 ~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~-~l~~~~ 247 (252)
+..+..+.+++++++||+|||..+.++++.... .+.+++|+.|+|+.|.++++.+. .++..+
T Consensus 11 ~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-----------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~ 73 (819)
T TIGR01970 11 RDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-----------IGGKIIMLEPRRLAARSAAQRLASQLGEAV 73 (819)
T ss_pred HHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-----------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCc
Confidence 344556789999999999999999999886541 14589999999999999999884 444433
No 209
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=97.15 E-value=0.0019 Score=60.51 Aligned_cols=72 Identities=24% Similarity=0.216 Sum_probs=58.7
Q ss_pred CChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHh
Q psy7786 166 KPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCA 245 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~ 245 (252)
.|..+|.. ..+.-...-+..+.||+|||+++.+|.+...+. +..+.|++++++||.+.++++..+.+
T Consensus 82 ~~ydVQli--Ggl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~-----------g~~VhIvT~ndyLA~RD~e~m~~l~~ 148 (908)
T PRK13107 82 RHFDVQLL--GGMVLDSNRIAEMRTGEGKTLTATLPAYLNALT-----------GKGVHVITVNDYLARRDAENNRPLFE 148 (908)
T ss_pred CcCchHHh--cchHhcCCccccccCCCCchHHHHHHHHHHHhc-----------CCCEEEEeCCHHHHHHHHHHHHHHHH
Confidence 67777774 333334566888999999999999999866553 33499999999999999999999999
Q ss_pred hCCCC
Q psy7786 246 ALPIG 250 (252)
Q Consensus 246 ~~~i~ 250 (252)
.+|++
T Consensus 149 ~lGls 153 (908)
T PRK13107 149 FLGLT 153 (908)
T ss_pred hcCCe
Confidence 99875
No 210
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.08 E-value=0.0018 Score=53.96 Aligned_cols=61 Identities=18% Similarity=0.127 Sum_probs=43.9
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhC
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 73 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~ 73 (252)
...+++|.|..|||||.+.+-=+...+..... +.-+.|++++|+..|..+.+.+.......
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~-------~~~~Il~lTft~~aa~e~~~ri~~~l~~~ 72 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGV-------PPERILVLTFTNAAAQEMRERIRELLEEE 72 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSS-------TGGGEEEEESSHHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEeCCCCCchHHHHHHHHHhhccccC-------ChHHheecccCHHHHHHHHHHHHHhcCcc
Confidence 36789999999999998765555544433211 23459999999999999999998875543
No 211
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.04 E-value=0.0012 Score=53.85 Aligned_cols=73 Identities=19% Similarity=0.280 Sum_probs=57.6
Q ss_pred EEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCcccCc
Q psy7786 11 IGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQ 90 (252)
Q Consensus 11 ~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~~~~~ 90 (252)
+++=.||=|||++-.+|..-..+. |..+=|++...-||.+=++.+..+-+.+| +++...+++.+.++
T Consensus 94 laEm~TGEGKTli~~l~a~~~AL~-----------G~~V~vvT~NdyLA~RD~~~~~~~y~~LG--lsv~~~~~~~~~~~ 160 (266)
T PF07517_consen 94 LAEMKTGEGKTLIAALPAALNALQ-----------GKGVHVVTSNDYLAKRDAEEMRPFYEFLG--LSVGIITSDMSSEE 160 (266)
T ss_dssp EEEESTTSHHHHHHHHHHHHHHTT-----------SS-EEEEESSHHHHHHHHHHHHHHHHHTT----EEEEETTTEHHH
T ss_pred eEEecCCCCcHHHHHHHHHHHHHh-----------cCCcEEEeccHHHhhccHHHHHHHHHHhh--hccccCccccCHHH
Confidence 889999999999999988765543 45688999999999999999999999999 88888888876544
Q ss_pred chhhhh
Q psy7786 91 SLDVIK 96 (252)
Q Consensus 91 ~~~~l~ 96 (252)
+.+...
T Consensus 161 r~~~Y~ 166 (266)
T PF07517_consen 161 RREAYA 166 (266)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444333
No 212
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.97 E-value=0.0037 Score=45.01 Aligned_cols=55 Identities=40% Similarity=0.533 Sum_probs=43.5
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHh
Q psy7786 182 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCA 245 (252)
Q Consensus 182 ~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~ 245 (252)
+++++..++|+|||...+..+....... ...+++|+||++.++++..+.+....+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~---------~~~~~lv~~p~~~l~~~~~~~~~~~~~ 55 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL---------KGGQVLVLAPTRELANQVAERLKELFG 55 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc---------cCCCEEEEcCcHHHHHHHHHHHHHHhh
Confidence 3578899999999998777766544331 245799999999999999998887765
No 213
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.95 E-value=0.0013 Score=60.54 Aligned_cols=101 Identities=13% Similarity=0.116 Sum_probs=64.4
Q ss_pred EcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCcccCcch
Q psy7786 13 IAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQSL 92 (252)
Q Consensus 13 ~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~ 92 (252)
.+-+|||||..|+=-+- ..+.. |-++|+++|...|..|+.+.++.. .+ .-.+..++++.+..++.
T Consensus 166 ~~~~GSGKTevyl~~i~-~~l~~----------Gk~vLvLvPEi~lt~q~~~rl~~~---f~-~~~v~~lhS~l~~~~R~ 230 (665)
T PRK14873 166 QALPGEDWARRLAAAAA-ATLRA----------GRGALVVVPDQRDVDRLEAALRAL---LG-AGDVAVLSAGLGPADRY 230 (665)
T ss_pred hcCCCCcHHHHHHHHHH-HHHHc----------CCeEEEEecchhhHHHHHHHHHHH---cC-CCcEEEECCCCCHHHHH
Confidence 34469999999965443 33332 447999999999999998888743 22 13567788887777666
Q ss_pred hhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 93 DVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 93 ~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
+...+- .. +...+++.+-.-...-+.+ +..+|.||+
T Consensus 231 ~~w~~~-------~~--G~~~IViGtRSAvFaP~~~-LgLIIvdEE 266 (665)
T PRK14873 231 RRWLAV-------LR--GQARVVVGTRSAVFAPVED-LGLVAIWDD 266 (665)
T ss_pred HHHHHH-------hC--CCCcEEEEcceeEEeccCC-CCEEEEEcC
Confidence 655441 10 2234455555555555666 776665553
No 214
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=96.90 E-value=0.0043 Score=47.29 Aligned_cols=65 Identities=28% Similarity=0.303 Sum_probs=47.4
Q ss_pred ChHHHHhhhhhhh-------cCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHH
Q psy7786 167 PTPIQVQGIPAAL-------SGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 239 (252)
Q Consensus 167 p~~iQ~~~~p~~~-------~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~ 239 (252)
+.+.|..++..+. .....++.+++|+|||...+... ..+.. +++++||++.+++|..+.
T Consensus 4 lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~-~~l~~-------------~~l~~~p~~~l~~Q~~~~ 69 (184)
T PF04851_consen 4 LRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALI-LELAR-------------KVLIVAPNISLLEQWYDE 69 (184)
T ss_dssp E-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHH-HHHHC-------------EEEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhh-hcccc-------------ceeEecCHHHHHHHHHHH
Confidence 4566777775555 25889999999999998866322 22221 699999999999999998
Q ss_pred HHHHHh
Q psy7786 240 IQYYCA 245 (252)
Q Consensus 240 l~~l~~ 245 (252)
+..+..
T Consensus 70 ~~~~~~ 75 (184)
T PF04851_consen 70 FDDFGS 75 (184)
T ss_dssp HHHHST
T ss_pred HHHhhh
Confidence 865543
No 215
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=96.83 E-value=0.0072 Score=50.05 Aligned_cols=73 Identities=22% Similarity=0.201 Sum_probs=39.7
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeC
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIG 84 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g 84 (252)
...+..+++...|+|||...+.-+. .+...... ...-.+||++|. .+..|=.+++.++..... +++....|
T Consensus 23 ~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~-----~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~--~~v~~~~~ 93 (299)
T PF00176_consen 23 SPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQ-----RGEKKTLIVVPS-SLLSQWKEEIEKWFDPDS--LRVIIYDG 93 (299)
T ss_dssp TTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTT-----SS-S-EEEEE-T-TTHHHHHHHHHHHSGT-T--S-EEEESS
T ss_pred cCCCCEEEEECCCCCchhhhhhhhh-hhhhcccc-----ccccceeEeecc-chhhhhhhhhcccccccc--cccccccc
Confidence 3456789999999999976654433 33322210 011249999999 677777777776654323 56666666
Q ss_pred Cc
Q psy7786 85 GV 86 (252)
Q Consensus 85 ~~ 86 (252)
+.
T Consensus 94 ~~ 95 (299)
T PF00176_consen 94 DS 95 (299)
T ss_dssp SC
T ss_pred cc
Confidence 54
No 216
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.72 E-value=0.004 Score=58.49 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=20.2
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 220 GPYGLIICPSRELARQTHDIIQY 242 (252)
Q Consensus 220 ~~~~LIf~~tr~~a~~i~~~l~~ 242 (252)
....|||.|-.+..++..+.|++
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~ 281 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEK 281 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHh
Confidence 55799999999999999998886
No 217
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.61 E-value=0.0059 Score=48.48 Aligned_cols=62 Identities=18% Similarity=0.170 Sum_probs=39.0
Q ss_pred ccCCCc-EEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 4 YRNSRD-IIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 68 (252)
Q Consensus 4 ~~~g~d-~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~ 68 (252)
+++..+ .++++|.||||| ..+.-++..+..... ......+.+.|+++||.+-+.++.+.+.+
T Consensus 13 ~~~~~~~~~i~GpPGTGKT-~~l~~~i~~~~~~~~--~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 13 ALSSNGITLIQGPPGTGKT-TTLASIIAQLLQRFK--SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp HCTSSE-EEEE-STTSSHH-HHHHHHHHHH---------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred HHcCCCCEEEECCCCCChH-HHHHHHHHHhccchh--hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 455666 899999999999 333445555421100 00112466799999999999998887776
No 218
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.61 E-value=0.012 Score=56.67 Aligned_cols=73 Identities=21% Similarity=0.212 Sum_probs=53.3
Q ss_pred CChHHHHhhhhh----hhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHH-H
Q psy7786 166 KPTPIQVQGIPA----ALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI-I 240 (252)
Q Consensus 166 ~p~~iQ~~~~p~----~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~-l 240 (252)
.+.+-|..+... .-.+...++-++||+|||++|++|.+.....+ +.+++|-++|+.+-+|+... +
T Consensus 257 e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~----------~~~vvIsT~T~~LQ~Ql~~kDi 326 (928)
T PRK08074 257 EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKK----------EEPVVISTYTIQLQQQLLEKDI 326 (928)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhcc----------CCeEEEEcCCHHHHHHHHHhhH
Confidence 466667765533 34567888999999999999999998654432 45799999999999998663 4
Q ss_pred HHHHhhCC
Q psy7786 241 QYYCAALP 248 (252)
Q Consensus 241 ~~l~~~~~ 248 (252)
-.+.+-++
T Consensus 327 P~L~~~~~ 334 (928)
T PRK08074 327 PLLQKIFP 334 (928)
T ss_pred HHHHHHcC
Confidence 44444333
No 219
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=96.59 E-value=0.0086 Score=52.82 Aligned_cols=65 Identities=25% Similarity=0.313 Sum_probs=51.6
Q ss_pred CChHHHHhhhhhhhc----CCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 166 KPTPIQVQGIPAALS----GRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~----~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~ 241 (252)
.+.+.|..++.+... ++..+++.+||+|||...+..+.. + ..++||+||+++++.|.++.+.
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~-~-------------~~~~Lvlv~~~~L~~Qw~~~~~ 101 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAE-L-------------KRSTLVLVPTKELLDQWAEALK 101 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHH-h-------------cCCEEEEECcHHHHHHHHHHHH
Confidence 578899999988887 899999999999999876554432 1 2239999999999999987665
Q ss_pred HHH
Q psy7786 242 YYC 244 (252)
Q Consensus 242 ~l~ 244 (252)
+..
T Consensus 102 ~~~ 104 (442)
T COG1061 102 KFL 104 (442)
T ss_pred Hhc
Confidence 443
No 220
>PRK09694 helicase Cas3; Provisional
Probab=96.52 E-value=0.014 Score=55.55 Aligned_cols=73 Identities=21% Similarity=0.107 Sum_probs=53.0
Q ss_pred CCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 165 KKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 165 ~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
..|.++|..+........-+++.++||+|||.+.+.... .+... ....++++-.||+..+++++++++++.
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~-~l~~~--------~~~~gi~~aLPT~Atan~m~~Rl~~~~ 355 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAW-RLIDQ--------GLADSIIFALPTQATANAMLSRLEALA 355 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHH-HHHHh--------CCCCeEEEECcHHHHHHHHHHHHHHHH
Confidence 368899997654433445688999999999998766544 33322 123568888899999999999998765
Q ss_pred hh
Q psy7786 245 AA 246 (252)
Q Consensus 245 ~~ 246 (252)
..
T Consensus 356 ~~ 357 (878)
T PRK09694 356 SK 357 (878)
T ss_pred HH
Confidence 54
No 221
>KOG0354|consensus
Probab=96.51 E-value=0.0067 Score=55.67 Aligned_cols=69 Identities=23% Similarity=0.233 Sum_probs=53.5
Q ss_pred CChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 166 KPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
.+...|.....+.+ |++++++.|||+|||.....-+..++-.. ...++++++||+-++.|....++..+
T Consensus 62 ~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~---------p~~KiVF~aP~~pLv~QQ~a~~~~~~ 130 (746)
T KOG0354|consen 62 ELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWR---------PKGKVVFLAPTRPLVNQQIACFSIYL 130 (746)
T ss_pred cccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcC---------CcceEEEeeCCchHHHHHHHHHhhcc
Confidence 45567887777777 99999999999999997666665544322 23689999999999999887766554
No 222
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=96.42 E-value=0.041 Score=51.20 Aligned_cols=49 Identities=14% Similarity=0.141 Sum_probs=36.8
Q ss_pred EEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 10 IIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 68 (252)
Q Consensus 10 ~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~ 68 (252)
.++.||.|||||.+..-++-+.+.. ..-++|+++-.|.|+.+..+.++.
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~~----------~~~~VLvVShRrSL~~sL~~rf~~ 100 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALKN----------PDKSVLVVSHRRSLTKSLAERFKK 100 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhccC----------CCCeEEEEEhHHHHHHHHHHHHhh
Confidence 5789999999997764443332221 245799999999999999887764
No 223
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.35 E-value=0.0075 Score=53.07 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=36.0
Q ss_pred CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l 69 (252)
++-.+.+-||||||.+.. -++..+ +--+||++|.+-||-|.+.+++.|
T Consensus 33 ~~QtLLGvTGSGKTfT~A-nVI~~~-------------~rPtLV~AhNKTLAaQLy~Efk~f 80 (663)
T COG0556 33 KHQTLLGVTGSGKTFTMA-NVIAKV-------------QRPTLVLAHNKTLAAQLYSEFKEF 80 (663)
T ss_pred eeeEEeeeccCCchhHHH-HHHHHh-------------CCCeEEEecchhHHHHHHHHHHHh
Confidence 356778899999996642 222222 123899999999999999999987
No 224
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=96.24 E-value=0.017 Score=54.12 Aligned_cols=76 Identities=17% Similarity=0.188 Sum_probs=59.4
Q ss_pred EEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCcccCc
Q psy7786 11 IGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQ 90 (252)
Q Consensus 11 ~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~~~~~ 90 (252)
++.-.||=|||++..+|+.-..+. |-.+=|++..--||..=.+++..+-+.+| +++.+...+.+..+
T Consensus 95 IAEMkTGEGKTLvAtLpayLnAL~-----------GkgVhVVTvNdYLA~RDae~mg~vy~fLG--LsvG~i~~~~~~~~ 161 (925)
T PRK12903 95 VAEMKTGEGKTITSIAPVYLNALT-----------GKGVIVSTVNEYLAERDAEEMGKVFNFLG--LSVGINKANMDPNL 161 (925)
T ss_pred eeeecCCCCccHHHHHHHHHHHhc-----------CCceEEEecchhhhhhhHHHHHHHHHHhC--CceeeeCCCCChHH
Confidence 688899999999999998755443 44578889999999999999999999999 78887777655554
Q ss_pred chhhhhhcccc
Q psy7786 91 SLDVIKKGIQY 101 (252)
Q Consensus 91 ~~~~l~~~~~i 101 (252)
+.+.. .+||
T Consensus 162 rr~aY--~~DI 170 (925)
T PRK12903 162 KREAY--ACDI 170 (925)
T ss_pred HHHhc--cCCC
Confidence 44443 3566
No 225
>KOG0949|consensus
Probab=96.07 E-value=0.006 Score=57.23 Aligned_cols=116 Identities=17% Similarity=0.230 Sum_probs=66.3
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeee
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAI 83 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~ 83 (252)
+-.+..+++.|||-+|||.. ....++..++... .--+++++||++|.+|+...+..--. .....+.....
T Consensus 523 vDr~eSavIVAPTSaGKTfi-sfY~iEKVLResD--------~~VVIyvaPtKaLVnQvsa~VyaRF~-~~t~~rg~sl~ 592 (1330)
T KOG0949|consen 523 VDRNESAVIVAPTSAGKTFI-SFYAIEKVLRESD--------SDVVIYVAPTKALVNQVSANVYARFD-TKTFLRGVSLL 592 (1330)
T ss_pred hhcccceEEEeeccCCceec-cHHHHHHHHhhcC--------CCEEEEecchHHHhhhhhHHHHHhhc-cCccccchhhH
Confidence 34577899999999999953 2345666666542 23489999999999999776643221 11113444455
Q ss_pred CCcccCcchhhhhhcccccCCccccccCCccccCCChh---HHHHHhhhhceeeccCC
Q psy7786 84 GGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQ---VHDIIRRNLRILVEGDD 138 (252)
Q Consensus 84 g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~---~~~~l~~~~~~~V~de~ 138 (252)
|....+-+.... .|.+ ..| -|+.+.++.-. ...... .++++|-||-
T Consensus 593 g~ltqEYsinp~--nCQV---LIT---vPecleslLlspp~~q~~ce-rIRyiIfDEV 641 (1330)
T KOG0949|consen 593 GDLTQEYSINPW--NCQV---LIT---VPECLESLLLSPPHHQKFCE-RIRYIIFDEV 641 (1330)
T ss_pred hhhhHHhcCCch--hceE---EEE---chHHHHHHhcCchhhhhhhh-cceEEEechh
Confidence 554433333211 2444 233 36555444333 222333 3788887763
No 226
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.04 E-value=0.0087 Score=50.31 Aligned_cols=47 Identities=19% Similarity=0.178 Sum_probs=31.9
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELA 59 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa 59 (252)
+..+++++++++|||||| +++=.++..+.... ..-+.+.+-.+.||.
T Consensus 141 v~~~~nilI~G~tGSGKT-Tll~aL~~~i~~~~--------~~~rivtiEd~~El~ 187 (323)
T PRK13833 141 IDSRLNIVISGGTGSGKT-TLANAVIAEIVASA--------PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHcCCeEEEECCCCCCHH-HHHHHHHHHHhcCC--------CCceEEEecCCcccc
Confidence 456889999999999999 34344444443211 134678888888874
No 227
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.95 E-value=0.009 Score=50.25 Aligned_cols=47 Identities=34% Similarity=0.350 Sum_probs=33.3
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELA 59 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa 59 (252)
+..+++++++++|||||| +++-.++..+.... ..-+.+++-.+.||.
T Consensus 145 v~~~~~ilI~G~tGSGKT-Tll~aL~~~~~~~~--------~~~rivtIEd~~El~ 191 (319)
T PRK13894 145 VRAHRNILVIGGTGSGKT-TLVNAIINEMVIQD--------PTERVFIIEDTGEIQ 191 (319)
T ss_pred HHcCCeEEEECCCCCCHH-HHHHHHHHhhhhcC--------CCceEEEEcCCCccc
Confidence 567899999999999999 55555555442111 234678888888874
No 228
>PF13245 AAA_19: Part of AAA domain
Probab=95.95 E-value=0.07 Score=34.71 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=35.4
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q psy7786 182 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 240 (252)
Q Consensus 182 ~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l 240 (252)
.-+++.+++|+|||...+--....+.... .. +.+++++++|+..++.+.+.+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~------~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARA------DP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhc------CC-CCeEEEECCCHHHHHHHHHHH
Confidence 33555999999998654433333332111 11 557999999999999999888
No 229
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.87 E-value=0.0057 Score=51.92 Aligned_cols=44 Identities=20% Similarity=0.104 Sum_probs=30.6
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELA 59 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa 59 (252)
+..+++++++++|||||| +++-.++..+-. .-+.+.+-.+.||.
T Consensus 159 v~~~~nilI~G~tGSGKT-Tll~aLl~~i~~-----------~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKT-TMSKTLISAIPP-----------QERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHH-HHHHHHHcccCC-----------CCCEEEECCCcccc
Confidence 457899999999999999 443444443321 23567788888874
No 230
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=95.85 E-value=0.048 Score=49.58 Aligned_cols=88 Identities=25% Similarity=0.247 Sum_probs=68.3
Q ss_pred CCHHHHHHH-HHCCCCCChHHHHhhhhhhhcC------CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEE
Q psy7786 151 LPESLVRAL-EAKGIKKPTPIQVQGIPAALSG------RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG 223 (252)
Q Consensus 151 l~~~l~~~l-~~~~~~~p~~iQ~~~~p~~~~~------~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 223 (252)
...++.+.+ +...| .+|..|..++.....+ -+-+++.+.|||||...++.++.-+. .|.|+
T Consensus 247 ~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~-----------~G~Q~ 314 (677)
T COG1200 247 ANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE-----------AGYQA 314 (677)
T ss_pred ccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH-----------cCCee
Confidence 444444444 44444 6888999888666543 35678889999999999998887554 37789
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhCCCC
Q psy7786 224 LIICPSRELARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 224 LIf~~tr~~a~~i~~~l~~l~~~~~i~ 250 (252)
...+||--+|+|-++.++++.+.++++
T Consensus 315 ALMAPTEILA~QH~~~~~~~l~~~~i~ 341 (677)
T COG1200 315 ALMAPTEILAEQHYESLRKWLEPLGIR 341 (677)
T ss_pred EEeccHHHHHHHHHHHHHHHhhhcCCe
Confidence 999999999999999999999988764
No 231
>KOG0352|consensus
Probab=95.82 E-value=0.024 Score=48.65 Aligned_cols=63 Identities=27% Similarity=0.409 Sum_probs=52.0
Q ss_pred ChHHHHhhhhhhhcC-CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 167 PTPIQVQGIPAALSG-RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243 (252)
Q Consensus 167 p~~iQ~~~~p~~~~~-~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l 243 (252)
-++.|..++-....+ .|+.++.+||+||.++|-+|.|.. +.-+|||.|-..+.....+.|.++
T Consensus 21 Ks~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~--------------~gITIV~SPLiALIkDQiDHL~~L 84 (641)
T KOG0352|consen 21 KSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH--------------GGITIVISPLIALIKDQIDHLKRL 84 (641)
T ss_pred cChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh--------------CCeEEEehHHHHHHHHHHHHHHhc
Confidence 467888888776654 799999999999999999999852 336999999999998888887654
No 232
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=95.79 E-value=0.038 Score=51.62 Aligned_cols=57 Identities=21% Similarity=0.118 Sum_probs=44.2
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHH-HHHHHHhhCC
Q psy7786 182 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHD-IIQYYCAALP 248 (252)
Q Consensus 182 ~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~-~l~~l~~~~~ 248 (252)
...++-|+||+|||++|++|.+...... +.+++|=++|+.|-+|+.. -+-.+.+.++
T Consensus 50 ~~lviEAgTGtGKTlaYLlPai~~A~~~----------~k~vVIST~T~~LQeQL~~kDlP~l~~~l~ 107 (697)
T PRK11747 50 RILVIEAGTGVGKTLSYLLAGIPIARAE----------KKKLVISTATVALQEQLVSKDLPLLLKISG 107 (697)
T ss_pred ceEEEECCCCcchhHHHHHHHHHHHHHc----------CCeEEEEcCCHHHHHHHHhhhhhHHHHHcC
Confidence 5678889999999999999998765532 4569999999999999864 3444444443
No 233
>KOG4150|consensus
Probab=95.79 E-value=0.012 Score=52.36 Aligned_cols=52 Identities=15% Similarity=-0.033 Sum_probs=42.6
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHD 64 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~ 64 (252)
+-+|+++++...|-+||.+.|.+..+..+.... ....+++.||+|++....+
T Consensus 298 ~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~---------~s~~~~~~~~~~~~~~~~~ 349 (1034)
T KOG4150|consen 298 ASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH---------ATNSLLPSEMVEHLRNGSK 349 (1034)
T ss_pred hhhcccccccchhhcCCccCcccchhhhhhcCc---------ccceecchhHHHHhhccCC
Confidence 457999999999999999999999887766544 3357999999999987654
No 234
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.78 E-value=0.016 Score=48.37 Aligned_cols=47 Identities=28% Similarity=0.305 Sum_probs=32.0
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELA 59 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa 59 (252)
+..+++++++++|||||| +++-.++..+.... ..-+.+++--+.||.
T Consensus 129 v~~~~~ilI~G~tGSGKT-Tll~al~~~i~~~~--------~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 129 VLARKNILVVGGTGSGKT-TLANALLAEIAKND--------PTDRVVIIEDTRELQ 175 (299)
T ss_pred HHcCCeEEEECCCCCCHH-HHHHHHHHHhhccC--------CCceEEEECCchhhc
Confidence 456789999999999999 44344444443211 134688888888874
No 235
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=95.71 E-value=0.032 Score=53.14 Aligned_cols=52 Identities=23% Similarity=0.215 Sum_probs=40.9
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~ 67 (252)
..++.+.-+||||||.+|+-.++...... +..+.||++|+.+.-..+.+.+.
T Consensus 59 ~~n~~~~M~TGtGKT~~~~~~i~~l~~~~---------~~~~fii~vp~~aI~egv~~~l~ 110 (986)
T PRK15483 59 KANIDIKMETGTGKTYVYTRLMYELHQKY---------GLFKFIIVVPTPAIKEGTRNFIQ 110 (986)
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHHHHHc---------CCcEEEEEeCCHHHHHHHHHHhh
Confidence 35789999999999999988776543221 35679999999999888876664
No 236
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.67 E-value=0.051 Score=42.41 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=30.9
Q ss_pred cEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHH
Q psy7786 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65 (252)
Q Consensus 9 d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~ 65 (252)
=.+++++.|||||.+ +-.+...+.. .+.++++++||...+..+.+.
T Consensus 20 ~~~l~G~aGtGKT~~-l~~~~~~~~~----------~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTL-LKALAEALEA----------AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp EEEEEESTTSTHHHH-HHHHHHHHHH----------TT--EEEEESSHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHH-HHHHHHHHHh----------CCCeEEEECCcHHHHHHHHHh
Confidence 367889999999954 2334444333 246799999999988776554
No 237
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.65 E-value=0.0089 Score=50.58 Aligned_cols=44 Identities=23% Similarity=0.133 Sum_probs=30.1
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELA 59 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa 59 (252)
+..+++++++++|||||| +++-.++..+-. .-+.+.+--+.||.
T Consensus 157 v~~~~nili~G~tgSGKT-Tll~aL~~~ip~-----------~~ri~tiEd~~El~ 200 (332)
T PRK13900 157 VISKKNIIISGGTSTGKT-TFTNAALREIPA-----------IERLITVEDAREIV 200 (332)
T ss_pred HHcCCcEEEECCCCCCHH-HHHHHHHhhCCC-----------CCeEEEecCCCccc
Confidence 346899999999999999 444444544422 23567776777764
No 238
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=95.59 E-value=0.065 Score=49.80 Aligned_cols=71 Identities=28% Similarity=0.308 Sum_probs=55.1
Q ss_pred CCCChHHHHhhhh----hhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHH
Q psy7786 164 IKKPTPIQVQGIP----AALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 239 (252)
Q Consensus 164 ~~~p~~iQ~~~~p----~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~ 239 (252)
...|.+.|..++. +...+...++-++||+|||++|+.|.+...... +.+++|-++|+.+-+|+.+.
T Consensus 13 ~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~----------~~~viist~t~~lq~q~~~~ 82 (654)
T COG1199 13 GFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE----------GKKVIISTRTKALQEQLLEE 82 (654)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc----------CCcEEEECCCHHHHHHHHHh
Confidence 3456777777663 333456699999999999999999999876543 35699999999999999888
Q ss_pred HHHHH
Q psy7786 240 IQYYC 244 (252)
Q Consensus 240 l~~l~ 244 (252)
...+.
T Consensus 83 ~~~~~ 87 (654)
T COG1199 83 DLPIH 87 (654)
T ss_pred hcchh
Confidence 76653
No 239
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=95.55 E-value=0.032 Score=50.37 Aligned_cols=68 Identities=29% Similarity=0.432 Sum_probs=59.4
Q ss_pred CCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 163 GIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 242 (252)
Q Consensus 163 ~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~ 242 (252)
|+....+-|...+...++++|.++..+||.||+++|-+|.+.. ..-+||+.|-..|-+...+.+++
T Consensus 14 Gy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~--------------~G~TLVVSPLiSLM~DQV~~l~~ 79 (590)
T COG0514 14 GYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL--------------EGLTLVVSPLISLMKDQVDQLEA 79 (590)
T ss_pred CccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc--------------CCCEEEECchHHHHHHHHHHHHH
Confidence 6777888899999999999999999999999999999999853 12489999999999988888877
Q ss_pred HH
Q psy7786 243 YC 244 (252)
Q Consensus 243 l~ 244 (252)
.|
T Consensus 80 ~G 81 (590)
T COG0514 80 AG 81 (590)
T ss_pred cC
Confidence 65
No 240
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=95.54 E-value=0.027 Score=41.35 Aligned_cols=50 Identities=18% Similarity=0.200 Sum_probs=37.8
Q ss_pred cEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 183 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 242 (252)
Q Consensus 183 ~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~ 242 (252)
-.++..-+|+|||-..+..++....+. +.++||+.|||-.++.+.+.|+.
T Consensus 6 ~~~~d~hpGaGKTr~vlp~~~~~~i~~----------~~rvLvL~PTRvva~em~~aL~~ 55 (148)
T PF07652_consen 6 LTVLDLHPGAGKTRRVLPEIVREAIKR----------RLRVLVLAPTRVVAEEMYEALKG 55 (148)
T ss_dssp EEEEE--TTSSTTTTHHHHHHHHHHHT----------T--EEEEESSHHHHHHHHHHTTT
T ss_pred eeEEecCCCCCCcccccHHHHHHHHHc----------cCeEEEecccHHHHHHHHHHHhc
Confidence 345667789999998888887766654 45799999999999999999864
No 241
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=95.42 E-value=0.064 Score=52.59 Aligned_cols=70 Identities=21% Similarity=0.164 Sum_probs=51.6
Q ss_pred CChHHHHhhhhhhh----c-CCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q psy7786 166 KPTPIQVQGIPAAL----S-GRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 240 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~----~-~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l 240 (252)
.+.+.|..++..+. . .+..+++.+||+|||... +.++..++... ...++|+++++++|+.|..+.+
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~ta-i~li~~L~~~~--------~~~rVLfLvDR~~L~~Qa~~~F 483 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTA-IALMYRLLKAK--------RFRRILFLVDRSALGEQAEDAF 483 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHH-HHHHHHHHhcC--------ccCeEEEEecHHHHHHHHHHHH
Confidence 46778888886654 2 367899999999999763 33444444321 2458999999999999999998
Q ss_pred HHHH
Q psy7786 241 QYYC 244 (252)
Q Consensus 241 ~~l~ 244 (252)
+.++
T Consensus 484 ~~~~ 487 (1123)
T PRK11448 484 KDTK 487 (1123)
T ss_pred Hhcc
Confidence 8653
No 242
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.39 E-value=0.073 Score=49.92 Aligned_cols=72 Identities=19% Similarity=0.156 Sum_probs=56.5
Q ss_pred CCChHHHHhhh----hhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q psy7786 165 KKPTPIQVQGI----PAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 240 (252)
Q Consensus 165 ~~p~~iQ~~~~----p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l 240 (252)
..+.+.|...+ .++-.+.+.++-+|||+|||++.+.+.+.+..... ..++.++.+.|...-.|+.++|
T Consensus 9 ~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~--------~~~kIiy~sRThsQl~q~i~El 80 (705)
T TIGR00604 9 EKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP--------EVRKIIYASRTHSQLEQATEEL 80 (705)
T ss_pred CCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc--------ccccEEEEcccchHHHHHHHHH
Confidence 33466777665 44457789999999999999999999998765421 2357888889999999999999
Q ss_pred HHHH
Q psy7786 241 QYYC 244 (252)
Q Consensus 241 ~~l~ 244 (252)
+++.
T Consensus 81 k~~~ 84 (705)
T TIGR00604 81 RKLM 84 (705)
T ss_pred Hhhh
Confidence 9865
No 243
>KOG1803|consensus
Probab=95.24 E-value=0.029 Score=50.15 Aligned_cols=45 Identities=22% Similarity=0.169 Sum_probs=35.0
Q ss_pred EEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHH
Q psy7786 10 IIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65 (252)
Q Consensus 10 ~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~ 65 (252)
.++++|+|||||.+...-+.|.+.. +-++|+.+||++-..-+.+.
T Consensus 204 ~~I~GPPGTGKT~TlvEiI~qlvk~-----------~k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 204 LIIHGPPGTGKTRTLVEIISQLVKQ-----------KKRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred eEeeCCCCCCceeeHHHHHHHHHHc-----------CCeEEEEcCchHHHHHHHHH
Confidence 6789999999998877666665543 34699999999877666664
No 244
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=95.15 E-value=0.17 Score=46.91 Aligned_cols=77 Identities=25% Similarity=0.244 Sum_probs=62.7
Q ss_pred HCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q psy7786 161 AKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 240 (252)
Q Consensus 161 ~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l 240 (252)
+..-..|..+|....-.++.|+ +....||+|||+...+|.....+. |.++-|++++-.||.+=++++
T Consensus 73 R~lg~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~-----------G~~VhvvT~NdyLA~RDae~m 139 (764)
T PRK12326 73 RTLGLRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ-----------GRRVHVITVNDYLARRDAEWM 139 (764)
T ss_pred HHcCCCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc-----------CCCeEEEcCCHHHHHHHHHHH
Confidence 3334478999998887777764 567889999999988888765443 567999999999999999999
Q ss_pred HHHHhhCCCC
Q psy7786 241 QYYCAALPIG 250 (252)
Q Consensus 241 ~~l~~~~~i~ 250 (252)
..+-+.+|++
T Consensus 140 ~~ly~~LGLs 149 (764)
T PRK12326 140 GPLYEALGLT 149 (764)
T ss_pred HHHHHhcCCE
Confidence 9999998875
No 245
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=95.10 E-value=0.12 Score=43.05 Aligned_cols=71 Identities=20% Similarity=0.098 Sum_probs=49.4
Q ss_pred hHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHhhC
Q psy7786 168 TPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247 (252)
Q Consensus 168 ~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~~~ 247 (252)
++-|..++.. ....+++.+..|+|||...+.-++..+.... ....+.|+++.|+..|..+.+.+.......
T Consensus 2 ~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-------~~~~~Il~lTft~~aa~e~~~ri~~~l~~~ 72 (315)
T PF00580_consen 2 TDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-------VPPERILVLTFTNAAAQEMRERIRELLEEE 72 (315)
T ss_dssp -HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-------STGGGEEEEESSHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-------CChHHheecccCHHHHHHHHHHHHHhcCcc
Confidence 3456655554 5678999999999999987665555444321 123469999999999999999998876544
No 246
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=95.08 E-value=0.021 Score=50.79 Aligned_cols=48 Identities=33% Similarity=0.432 Sum_probs=36.6
Q ss_pred cEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69 (252)
Q Consensus 9 d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l 69 (252)
++++.|+||||||.+|++|.+- ... + -++|.-|-.||........++.
T Consensus 46 h~lvig~tgSGKt~~~viP~ll---~~~---------~-s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 46 HVLVIGPTGSGKTTSFVIPNLL---NYP---------G-SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred EEEEEeCCCCCccceeeHhHHH---hcc---------C-CEEEEECCCcHHHHHHHHHHHC
Confidence 6999999999999999999762 211 2 4788889999987766555443
No 247
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.08 E-value=0.018 Score=47.25 Aligned_cols=44 Identities=27% Similarity=0.214 Sum_probs=30.1
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELA 59 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa 59 (252)
..+.+++++++|||||| +++-.++..+... .-+.+++-.+.|+-
T Consensus 125 ~~~~~ili~G~tGSGKT-T~l~all~~i~~~----------~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKT-TLLNALLEEIPPE----------DERIVTIEDPPELR 168 (270)
T ss_dssp HTTEEEEEEESTTSSHH-HHHHHHHHHCHTT----------TSEEEEEESSS-S-
T ss_pred ccceEEEEECCCccccc-hHHHHHhhhcccc----------ccceEEecccccee
Confidence 45789999999999999 4445556555443 23578887777763
No 248
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.06 E-value=0.066 Score=49.46 Aligned_cols=50 Identities=18% Similarity=0.192 Sum_probs=36.2
Q ss_pred CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 68 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~ 68 (252)
..+++++|+|||||.+-. -++..+.. .+.++|+++||..-+.++.+.+..
T Consensus 174 ~~~lI~GpPGTGKT~t~~-~ii~~~~~----------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLV-ELIRQLVK----------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CeEEEEcCCCCCHHHHHH-HHHHHHHH----------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 568899999999995443 33333332 245799999999988888776654
No 249
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=95.02 E-value=0.14 Score=48.06 Aligned_cols=79 Identities=22% Similarity=0.192 Sum_probs=62.2
Q ss_pred HHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHH
Q psy7786 159 LEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHD 238 (252)
Q Consensus 159 l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~ 238 (252)
..+..-..|..+|...-=++..|+ +....||+|||+...+|.+...+. |.++-|+++|-.||.+=++
T Consensus 73 ~~R~~g~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~-----------G~~v~vvT~neyLA~Rd~e 139 (796)
T PRK12906 73 AKRVLGLRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT-----------GKGVHVVTVNEYLSSRDAT 139 (796)
T ss_pred HHHHhCCCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc-----------CCCeEEEeccHHHHHhhHH
Confidence 333334478888886655555554 888899999999988888765543 5679999999999999999
Q ss_pred HHHHHHhhCCCC
Q psy7786 239 IIQYYCAALPIG 250 (252)
Q Consensus 239 ~l~~l~~~~~i~ 250 (252)
++..+-+.+|++
T Consensus 140 ~~~~~~~~LGl~ 151 (796)
T PRK12906 140 EMGELYRWLGLT 151 (796)
T ss_pred HHHHHHHhcCCe
Confidence 999999999875
No 250
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.00 E-value=0.086 Score=49.09 Aligned_cols=65 Identities=23% Similarity=0.295 Sum_probs=49.5
Q ss_pred CChHHHHhhhhhhhc-C--CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 166 KPTPIQVQGIPAALS-G--RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 242 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~-~--~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~ 242 (252)
.+.+.|..++...+. + +.-+++.++|+|||...+..+.. + ..++||+||+..+++|..+.+.+
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l-------------~k~tLILvps~~Lv~QW~~ef~~ 320 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V-------------KKSCLVLCTSAVSVEQWKQQFKM 320 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h-------------CCCEEEEeCcHHHHHHHHHHHHH
Confidence 456788888877663 3 36788999999999986543321 1 23499999999999999999987
Q ss_pred HH
Q psy7786 243 YC 244 (252)
Q Consensus 243 l~ 244 (252)
+.
T Consensus 321 ~~ 322 (732)
T TIGR00603 321 WS 322 (732)
T ss_pred hc
Confidence 74
No 251
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=94.95 E-value=0.011 Score=51.09 Aligned_cols=47 Identities=26% Similarity=0.248 Sum_probs=36.1
Q ss_pred cEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 68 (252)
Q Consensus 9 d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~ 68 (252)
++++.|+||||||.+|++|-+-.. .-.++|.-|--|+........+.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-------------~~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-------------PGSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-------------CCCEEEEccchhHHHHHHHHHHH
Confidence 578999999999999999976321 12488888999998776655443
No 252
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=94.90 E-value=0.085 Score=51.04 Aligned_cols=60 Identities=25% Similarity=0.243 Sum_probs=44.7
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCC
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALP 74 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~ 74 (252)
.|+.-+|.--+|||||++-+-..-. +.... ..+.+++|+-.++|-.|+.+.+..++....
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~-l~~~~--------~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~ 331 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARL-LLELP--------KNPKVLFVVDRKDLDDQTSDEFQSFGKVAF 331 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHH-HHhcc--------CCCeEEEEechHHHHHHHHHHHHHHHHhhh
Confidence 4556788889999999774332221 11211 478899999999999999999999987654
No 253
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.81 E-value=0.098 Score=44.93 Aligned_cols=22 Identities=23% Similarity=0.138 Sum_probs=18.3
Q ss_pred ccCCCcEEEEcCCCchHHHHhH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFV 25 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~ 25 (252)
+-+|+.+++.+|||+|||.+..
T Consensus 134 ~~~g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHH
Confidence 4568899999999999996654
No 254
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.80 E-value=0.068 Score=41.02 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=27.3
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT 62 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~ 62 (252)
+.+++++++.+++|+|||... ..+...+... +..++++ .+.+|..++
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa-~ai~~~~~~~----------g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLA-VAIANEAIRK----------GYSVLFI-TASDLLDEL 90 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHH-HHHHHHHHHT----------T--EEEE-EHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHH-HHHHHHhccC----------CcceeEe-ecCceeccc
Confidence 457889999999999999543 3334444442 3346665 566666544
No 255
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=94.76 E-value=0.11 Score=49.70 Aligned_cols=107 Identities=15% Similarity=0.181 Sum_probs=70.8
Q ss_pred EEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCcccCc
Q psy7786 11 IGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQ 90 (252)
Q Consensus 11 ~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~~~~~ 90 (252)
|+.-+||-|||++..+|+.-..+. |-.+=|++-.==||..=.+++..+-+.+| +++.+...+.+..+
T Consensus 155 IAEM~TGEGKTLvatlp~yLnAL~-----------G~gVHvVTvNDYLA~RDaewm~p~y~flG--LtVg~i~~~~~~~~ 221 (1025)
T PRK12900 155 ISEMATGEGKTLVSTLPTFLNALT-----------GRGVHVVTVNDYLAQRDKEWMNPVFEFHG--LSVGVILNTMRPEE 221 (1025)
T ss_pred ccccCCCCCcchHhHHHHHHHHHc-----------CCCcEEEeechHhhhhhHHHHHHHHHHhC--CeeeeeCCCCCHHH
Confidence 567789999999999999866655 33466777788899999999999999999 78887766544443
Q ss_pred chhhhhhcccccCCccccccCCcc-----ccCCC-hhHHHHHhhhhceeeccCC
Q psy7786 91 SLDVIKKGIQYNDPIKTSWRAPRC-----ILSLP-DQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 91 ~~~~l~~~~~i~~~i~t~~~~p~~-----l~~~~-~~~~~~l~~~~~~~V~de~ 138 (252)
+++ .-.+|| .|+|... |-+.. ........+...|.+.||.
T Consensus 222 Rr~--aY~~DI------tYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEv 267 (1025)
T PRK12900 222 RRE--QYLCDI------TYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEV 267 (1025)
T ss_pred HHH--hCCCcc------eecCCCccccccchhccccchhhhhccCCceEEEech
Confidence 332 334666 3444432 22222 2223333445777776664
No 256
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=94.64 E-value=0.025 Score=51.69 Aligned_cols=50 Identities=26% Similarity=0.182 Sum_probs=39.2
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l 69 (252)
.+++++.||||||||..|++|-+-.. +-.++|+=|--|+........++.
T Consensus 158 ~~hvLviapTgSGKg~g~VIPnLL~~-------------~~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 158 FQHALLFAPTGSGKGVGFVIPNLLFW-------------EDSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred CceEEEEcCCCCCcceEEehhhHHhC-------------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 34799999999999999999987542 113888889999997777655543
No 257
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=94.58 E-value=0.12 Score=48.01 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=37.0
Q ss_pred cEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 70 (252)
Q Consensus 9 d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~ 70 (252)
+.++.+-||||||+... -+++.+ +-.+|||+|++.+|.|+++.++.|.
T Consensus 31 ~~~l~Gvtgs~kt~~~a-~~~~~~-------------~~p~Lvi~~n~~~A~ql~~el~~f~ 78 (655)
T TIGR00631 31 HQTLLGVTGSGKTFTMA-NVIAQV-------------NRPTLVIAHNKTLAAQLYNEFKEFF 78 (655)
T ss_pred cEEEECCCCcHHHHHHH-HHHHHh-------------CCCEEEEECCHHHHHHHHHHHHHhC
Confidence 66789999999997643 233321 1238999999999999999998874
No 258
>KOG0922|consensus
Probab=94.43 E-value=0.33 Score=44.16 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=34.1
Q ss_pred chhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHhhCC
Q psy7786 193 GKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALP 248 (252)
Q Consensus 193 gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~~~~ 248 (252)
..+..|+-..+..+++=... +...-.|||-+..+..+.+.+.|++..+.++
T Consensus 236 ~p~~dYv~a~~~tv~~Ih~~-----E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~ 286 (674)
T KOG0922|consen 236 EPTADYVDAALITVIQIHLT-----EPPGDILVFLTGQEEIEAACELLRERAKSLP 286 (674)
T ss_pred CCchhhHHHHHHHHHHHHcc-----CCCCCEEEEeCCHHHHHHHHHHHHHHhhhcc
Confidence 34455666665555443221 2233699999999999999999988766654
No 259
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=94.43 E-value=0.23 Score=46.87 Aligned_cols=72 Identities=25% Similarity=0.277 Sum_probs=57.6
Q ss_pred CChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHh
Q psy7786 166 KPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCA 245 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~ 245 (252)
.|..+|... .+.-....+....||.|||+...+|..-..+. |..+-|++.+..||.+-++++..+-+
T Consensus 76 r~ydvQlig--~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~-----------G~~VhVvT~NdyLA~RD~e~m~pvy~ 142 (870)
T CHL00122 76 RHFDVQLIG--GLVLNDGKIAEMKTGEGKTLVATLPAYLNALT-----------GKGVHIVTVNDYLAKRDQEWMGQIYR 142 (870)
T ss_pred CCCchHhhh--hHhhcCCccccccCCCCchHHHHHHHHHHHhc-----------CCceEEEeCCHHHHHHHHHHHHHHHH
Confidence 577887754 44445667888999999999988888643332 45699999999999999999999999
Q ss_pred hCCCC
Q psy7786 246 ALPIG 250 (252)
Q Consensus 246 ~~~i~ 250 (252)
.+|+.
T Consensus 143 ~LGLs 147 (870)
T CHL00122 143 FLGLT 147 (870)
T ss_pred HcCCc
Confidence 99875
No 260
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.39 E-value=0.13 Score=44.31 Aligned_cols=82 Identities=13% Similarity=0.259 Sum_probs=49.0
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeC
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIG 84 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g 84 (252)
..++-+.+.+|||.|||.+-.==.-...+.... .--++|-+-|-=.+ -.+.++.+++-+++++ .+++.
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~--------~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~--~vv~~ 268 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKK--------KKVAIITTDTYRIG--AVEQLKTYADIMGVPL--EVVYS 268 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccC--------cceEEEEeccchhh--HHHHHHHHHHHhCCce--EEecC
Confidence 458899999999999997644222222222211 22366666554333 2355788888888544 44566
Q ss_pred CcccCcchhhhhhc
Q psy7786 85 GVPMNQSLDVIKKG 98 (252)
Q Consensus 85 ~~~~~~~~~~l~~~ 98 (252)
.....+.+..+++.
T Consensus 269 ~~el~~ai~~l~~~ 282 (407)
T COG1419 269 PKELAEAIEALRDC 282 (407)
T ss_pred HHHHHHHHHHhhcC
Confidence 65566666666653
No 261
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=94.37 E-value=0.54 Score=38.49 Aligned_cols=76 Identities=25% Similarity=0.330 Sum_probs=56.2
Q ss_pred CCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 162 KGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241 (252)
Q Consensus 162 ~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~ 241 (252)
..-..|..+|....=.+..|+ ++...||.|||+...++.....+. |..+=|+|.+..||.+=++++.
T Consensus 73 ~~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~-----------G~~V~vvT~NdyLA~RD~~~~~ 139 (266)
T PF07517_consen 73 TLGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ-----------GKGVHVVTSNDYLAKRDAEEMR 139 (266)
T ss_dssp HTS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT-----------SS-EEEEESSHHHHHHHHHHHH
T ss_pred HcCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh-----------cCCcEEEeccHHHhhccHHHHH
Confidence 334478899988776665555 888999999999877777655443 5569999999999999999999
Q ss_pred HHHhhCCCC
Q psy7786 242 YYCAALPIG 250 (252)
Q Consensus 242 ~l~~~~~i~ 250 (252)
.+-+.+|++
T Consensus 140 ~~y~~LGls 148 (266)
T PF07517_consen 140 PFYEFLGLS 148 (266)
T ss_dssp HHHHHTT--
T ss_pred HHHHHhhhc
Confidence 999999875
No 262
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.29 E-value=0.12 Score=48.58 Aligned_cols=58 Identities=21% Similarity=0.200 Sum_probs=40.3
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCA 71 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~ 71 (252)
...++|.|..|||||.+-+-=+. ++.....- ..-+.|+++-|+..|..+.+.+.++..
T Consensus 22 ~g~~lV~AgaGSGKT~vl~~Ria-~Li~~~~v------~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 22 LGNMLVLAGAGSGKTRVLVHRIA-WLMQVENA------SPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred CCCEEEEecCCCCHHHHHHHHHH-HHHHcCCC------ChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 45789999999999966433333 22221110 123589999999999999998887653
No 263
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=94.28 E-value=0.055 Score=50.23 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=42.6
Q ss_pred ccCCC-cEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 4 YRNSR-DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69 (252)
Q Consensus 4 ~~~g~-d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l 69 (252)
+.+|+ -+++.-.||||||-+. +.++.+|+.... --++|+|+-.+.|..|.+..+..+
T Consensus 181 f~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~~--------~KRVLFLaDR~~Lv~QA~~af~~~ 238 (875)
T COG4096 181 FSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSGW--------VKRVLFLADRNALVDQAYGAFEDF 238 (875)
T ss_pred HhcCCceEEEEEecCCCcceeH-HHHHHHHHhcch--------hheeeEEechHHHHHHHHHHHHHh
Confidence 33444 3888889999999654 455667766542 347999999999999999876655
No 264
>PRK11054 helD DNA helicase IV; Provisional
Probab=94.22 E-value=0.1 Score=48.53 Aligned_cols=58 Identities=22% Similarity=0.237 Sum_probs=39.1
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 70 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~ 70 (252)
...+++|.|..|||||...+-=+ .+++..... ..-+.|+++.||..|..+.+.+....
T Consensus 208 ~~~~~lV~agaGSGKT~vl~~r~-ayLl~~~~~------~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 208 GEDSLLVLAGAGSGKTSVLVARA-GWLLARGQA------QPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCeEEEEeCCCCHHHHHHHHH-HHHHHhCCC------CHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 34568999999999996543332 223322111 23369999999999999988776543
No 265
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=94.10 E-value=0.25 Score=43.47 Aligned_cols=67 Identities=22% Similarity=0.219 Sum_probs=47.1
Q ss_pred ChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 167 PTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 167 p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
|...|....-..+. ++.+++.|||-|||+-.+.-+...+... .+ ++|+++||+-|+.|-++.+++..
T Consensus 16 ~R~YQ~~i~a~al~-~NtLvvlPTGLGKT~IA~~V~~~~l~~~---------~~-kvlfLAPTKPLV~Qh~~~~~~v~ 82 (542)
T COG1111 16 PRLYQLNIAAKALF-KNTLVVLPTGLGKTFIAAMVIANRLRWF---------GG-KVLFLAPTKPLVLQHAEFCRKVT 82 (542)
T ss_pred HHHHHHHHHHHHhh-cCeEEEecCCccHHHHHHHHHHHHHHhc---------CC-eEEEecCCchHHHHHHHHHHHHh
Confidence 44455543333333 4899999999999987655554443332 23 89999999999999999887654
No 266
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=94.07 E-value=0.12 Score=48.49 Aligned_cols=58 Identities=21% Similarity=0.188 Sum_probs=40.4
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCA 71 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~ 71 (252)
+.+++|.|..|||||.+-+-=+. ++.....- ..-+.|+++-|+..|..+.+.+..+..
T Consensus 17 ~g~~lV~AgaGSGKT~~L~~Ria-~Li~~~~v------~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 17 PGNLLVLAGAGSGKTRVLTHRIA-WLLSVENA------SPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred CCCEEEEecCCCCHHHHHHHHHH-HHHHcCCC------CHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 45799999999999966433332 33322110 123589999999999999998887754
No 267
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.06 E-value=0.082 Score=41.45 Aligned_cols=45 Identities=27% Similarity=0.207 Sum_probs=28.7
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSREL 58 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreL 58 (252)
++..-+++.+|.|||||+..+...++.+.... .-+.+|.-|+.+.
T Consensus 17 ~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~---------~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 17 LNNDLVIVNGPAGTGKTFLALAAALELVKEGE---------YDKIIITRPPVEA 61 (205)
T ss_dssp HH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS----------SEEEEEE-S--T
T ss_pred HhCCeEEEECCCCCcHHHHHHHHHHHHHHhCC---------CcEEEEEecCCCC
Confidence 34456889999999999888888888876633 3467777787764
No 268
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=93.96 E-value=0.22 Score=47.97 Aligned_cols=70 Identities=23% Similarity=0.232 Sum_probs=53.8
Q ss_pred HCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q psy7786 161 AKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 240 (252)
Q Consensus 161 ~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l 240 (252)
..+| .+-++|..++-.+-.+..++++++|++|||...-..+-..+. .+.+++.-+|.+.+.+|.++.+
T Consensus 115 ~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~-----------~~qrviYTsPIKALsNQKyrdl 182 (1041)
T COG4581 115 EYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR-----------DGQRVIYTSPIKALSNQKYRDL 182 (1041)
T ss_pred hCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH-----------cCCceEeccchhhhhhhHHHHH
Confidence 3344 466789999999999999999999999999864433332222 1446999999999999999887
Q ss_pred HH
Q psy7786 241 QY 242 (252)
Q Consensus 241 ~~ 242 (252)
..
T Consensus 183 ~~ 184 (1041)
T COG4581 183 LA 184 (1041)
T ss_pred HH
Confidence 64
No 269
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=93.93 E-value=0.15 Score=47.49 Aligned_cols=57 Identities=18% Similarity=0.078 Sum_probs=40.0
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 70 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~ 70 (252)
+..++|.|..|||||.+-+-=+...+..... ..-+.|+++-|+.-|..+.+.+..+.
T Consensus 15 ~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v-------~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 15 TGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-------QARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCEEEEecCCCCHHHHHHHHHHHHHHhcCC-------CHHHeeeEechHHHHHHHHHHHHHHh
Confidence 4578899999999997654444333322111 12358999999999999988887653
No 270
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.90 E-value=0.21 Score=40.08 Aligned_cols=49 Identities=24% Similarity=0.226 Sum_probs=33.0
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEc---CcHHHHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIIC---PSRELARQT 62 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~---ptreLa~q~ 62 (252)
+..|.=+++.|++|+||| +|++-++....... +..+++++ |..++..+.
T Consensus 10 l~~G~l~lI~G~~G~GKT-~~~~~~~~~~~~~~---------g~~vly~s~E~~~~~~~~r~ 61 (242)
T cd00984 10 LQPGDLIIIAARPSMGKT-AFALNIAENIAKKQ---------GKPVLFFSLEMSKEQLLQRL 61 (242)
T ss_pred CCCCeEEEEEeCCCCCHH-HHHHHHHHHHHHhC---------CCceEEEeCCCCHHHHHHHH
Confidence 456778899999999999 66665554444431 34578887 556665544
No 271
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=93.81 E-value=0.17 Score=47.09 Aligned_cols=57 Identities=18% Similarity=0.097 Sum_probs=40.2
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 70 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~ 70 (252)
+.+++|.|..|||||.+-+-=+...+..... ..-+.|+++.|+.-|.++.+.+....
T Consensus 14 ~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~-------~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 14 TGPCLVLAGAGSGKTRVITNKIAYLIQNCGY-------KARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCCEEEEecCCCCHHHHHHHHHHHHHHhcCC-------CHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 5689999999999996654444333322111 12358999999999999988887654
No 272
>PF12846 AAA_10: AAA-like domain
Probab=93.71 E-value=0.14 Score=42.25 Aligned_cols=42 Identities=26% Similarity=0.385 Sum_probs=30.0
Q ss_pred CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHH
Q psy7786 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELAR 60 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~ 60 (252)
+++++.++||||||.+.. .++..+... +..++++=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~~----------g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIRR----------GPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHc----------CCCEEEEcCCchHHH
Confidence 689999999999996555 555555442 456788877766554
No 273
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=93.69 E-value=0.33 Score=46.16 Aligned_cols=73 Identities=23% Similarity=0.235 Sum_probs=57.9
Q ss_pred CCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 165 KKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 165 ~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
..|..+|... ...-...-+.-..||+|||+...+|.+...+. |.++-|+++|-.||.+=++++..+-
T Consensus 81 m~~ydVQliG--g~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~-----------G~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 81 MRHFDVQLIG--GMTLHEGKIAEMRTGEGKTLVGTLAVYLNALS-----------GKGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred CCcchhHHHh--hhHhccCccccccCCCCChHHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 4678887744 33334556778899999999988888755443 5679999999999999999999999
Q ss_pred hhCCCC
Q psy7786 245 AALPIG 250 (252)
Q Consensus 245 ~~~~i~ 250 (252)
+.+|++
T Consensus 148 ~~lGl~ 153 (913)
T PRK13103 148 EFLGLS 153 (913)
T ss_pred cccCCE
Confidence 998874
No 274
>PRK08181 transposase; Validated
Probab=93.66 E-value=0.16 Score=41.71 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=28.7
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 63 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~ 63 (252)
-+++++++.+|+|+|||.... .+.+.+... +..++++ +..+|..++.
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~-Aia~~a~~~----------g~~v~f~-~~~~L~~~l~ 150 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAA-AIGLALIEN----------GWRVLFT-RTTDLVQKLQ 150 (269)
T ss_pred hcCceEEEEecCCCcHHHHHH-HHHHHHHHc----------CCceeee-eHHHHHHHHH
Confidence 367899999999999993322 222233222 3345544 5677776664
No 275
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=93.61 E-value=0.051 Score=50.25 Aligned_cols=48 Identities=21% Similarity=0.134 Sum_probs=37.1
Q ss_pred CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 68 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~ 68 (252)
.++++.||||||||..|++|-+-.. .-.++|+=|--|+........++
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~-------------~gS~VV~DpKGE~~~~Ta~~R~~ 187 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF-------------KGSVIALDVKGELFELTSRARKA 187 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC-------------CCCEEEEeCCchHHHHHHHHHHh
Confidence 3899999999999999999976432 11488888999998777655543
No 276
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=93.59 E-value=0.11 Score=45.44 Aligned_cols=49 Identities=20% Similarity=0.240 Sum_probs=33.7
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHH
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQ 61 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q 61 (252)
|.-...+++++.++||||||.. +-.++..+... +-+++|+=|..|+...
T Consensus 37 ~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~~----------~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 37 PKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRAR----------GDRAIIYDPNGGFVSK 85 (410)
T ss_pred CcchhhccEEEEcCCCCCHHHH-HHHHHHHHHhc----------CCCEEEEeCCcchhHh
Confidence 4455678999999999999964 44445444332 3358888888886543
No 277
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.57 E-value=0.067 Score=44.93 Aligned_cols=45 Identities=27% Similarity=0.208 Sum_probs=30.9
Q ss_pred cccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHH
Q psy7786 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELA 59 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa 59 (252)
.+..+++++++++|||||| +++.+++..+-. ..+.+.+--|.|+-
T Consensus 139 ~ie~~~siii~G~t~sGKT-t~lnall~~Ip~-----------~~rivtIEdt~E~~ 183 (312)
T COG0630 139 AIEARKSIIICGGTASGKT-TLLNALLDFIPP-----------EERIVTIEDTPELK 183 (312)
T ss_pred HHHcCCcEEEECCCCCCHH-HHHHHHHHhCCc-----------hhcEEEEecccccc
Confidence 3567899999999999999 555555544432 23466666666653
No 278
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.52 E-value=0.043 Score=45.56 Aligned_cols=18 Identities=50% Similarity=0.584 Sum_probs=15.3
Q ss_pred cCCCcEEEEcCCCchHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~ 22 (252)
++.-|+++.+|||||||+
T Consensus 95 L~KSNILLiGPTGsGKTl 112 (408)
T COG1219 95 LSKSNILLIGPTGSGKTL 112 (408)
T ss_pred eeeccEEEECCCCCcHHH
Confidence 345589999999999995
No 279
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=93.35 E-value=0.29 Score=47.03 Aligned_cols=61 Identities=23% Similarity=0.176 Sum_probs=50.2
Q ss_pred EEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeC
Q psy7786 11 IGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIG 84 (252)
Q Consensus 11 ~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g 84 (252)
|+.-.||-|||++..+|+.-..+.. -.+=|++..==||..=.+++..+-+.+| +++.+...
T Consensus 186 IAEM~TGEGKTLvAtlp~yLnAL~G-----------kgVHvVTVNDYLA~RDaewmgply~fLG--Lsvg~i~~ 246 (1112)
T PRK12901 186 IAEMATGEGKTLVATLPVYLNALTG-----------NGVHVVTVNDYLAKRDSEWMGPLYEFHG--LSVDCIDK 246 (1112)
T ss_pred eeeecCCCCchhHHHHHHHHHHHcC-----------CCcEEEEechhhhhccHHHHHHHHHHhC--CceeecCC
Confidence 6677899999999999998766653 3467778888899999999999999999 77776654
No 280
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=93.35 E-value=0.14 Score=44.34 Aligned_cols=53 Identities=26% Similarity=0.291 Sum_probs=35.1
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHH
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHD 64 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~ 64 (252)
||.-...+++++.+.||||||. ++-+++..+... +-+++|.=|.-|.....++
T Consensus 9 l~~~~e~~~~li~G~~GsGKT~-~i~~ll~~~~~~----------g~~~iI~D~kg~~~~~f~~ 61 (386)
T PF10412_consen 9 LPKDSENRHILIIGATGSGKTQ-AIRHLLDQIRAR----------GDRAIIYDPKGEFTERFYR 61 (386)
T ss_dssp E-GGGGGG-EEEEE-TTSSHHH-HHHHHHHHHHHT----------T-EEEEEEETTHHHHHH--
T ss_pred cccchhhCcEEEECCCCCCHHH-HHHHHHHHHHHc----------CCEEEEEECCchHHHHhcC
Confidence 3556678899999999999996 446677666553 4468888899887654443
No 281
>KOG0953|consensus
Probab=93.31 E-value=0.13 Score=45.74 Aligned_cols=55 Identities=27% Similarity=0.254 Sum_probs=42.5
Q ss_pred EEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCC
Q psy7786 10 IIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGG 85 (252)
Q Consensus 10 ~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~ 85 (252)
++-++||.||||.- .++++.... .+++--|.|-||..|++.+... | +.|...+|.
T Consensus 194 i~H~GPTNSGKTy~----ALqrl~~ak-----------sGvycGPLrLLA~EV~~r~na~----g--ipCdL~TGe 248 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYR----ALQRLKSAK-----------SGVYCGPLRLLAHEVYDRLNAL----G--IPCDLLTGE 248 (700)
T ss_pred EEEeCCCCCchhHH----HHHHHhhhc-----------cceecchHHHHHHHHHHHhhhc----C--CCccccccc
Confidence 55678999999943 467776544 4789999999999999988755 3 677777776
No 282
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=93.29 E-value=0.28 Score=43.58 Aligned_cols=51 Identities=20% Similarity=0.256 Sum_probs=37.5
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHh
Q psy7786 181 GRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCA 245 (252)
Q Consensus 181 ~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~ 245 (252)
.+...+...||+|||+.... ++ .+. +.-+||++|.+-+|-|++.+++.|=+
T Consensus 32 ~~~QtLLGvTGSGKTfT~An-VI----~~~---------~rPtLV~AhNKTLAaQLy~Efk~fFP 82 (663)
T COG0556 32 LKHQTLLGVTGSGKTFTMAN-VI----AKV---------QRPTLVLAHNKTLAAQLYSEFKEFFP 82 (663)
T ss_pred ceeeEEeeeccCCchhHHHH-HH----HHh---------CCCeEEEecchhHHHHHHHHHHHhCc
Confidence 36778888999999875321 11 111 22389999999999999999998744
No 283
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.22 E-value=0.12 Score=40.27 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=15.6
Q ss_pred EEEEcCCCchHHHHhHHHHHHHH
Q psy7786 10 IIGIAFTGSGKTLVFVLPILMFC 32 (252)
Q Consensus 10 ~~~~a~tgsGKT~a~~lp~~~~~ 32 (252)
+++++|||||||... -.++..+
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHh
Confidence 688999999999543 3344444
No 284
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=93.15 E-value=0.066 Score=49.50 Aligned_cols=48 Identities=21% Similarity=0.153 Sum_probs=37.5
Q ss_pred CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 68 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~ 68 (252)
.++++.||||||||..|++|-+-.. . -.++|.=|--|+.......-++
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~---~----------~S~VV~D~KGEl~~~Ta~~R~~ 192 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTW---P----------GSAIVHDIKGENWQLTAGFRAR 192 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhC---C----------CCEEEEeCcchHHHHHHHHHHh
Confidence 5899999999999999999976432 1 1388888999998776655443
No 285
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.11 E-value=0.074 Score=44.61 Aligned_cols=20 Identities=40% Similarity=0.396 Sum_probs=17.1
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|+++++.++||||||..
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 44689999999999999943
No 286
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.09 E-value=0.095 Score=43.27 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=20.2
Q ss_pred EEEEcCCCchHHHHhHHHHHHHHHHhh
Q psy7786 10 IIGIAFTGSGKTLVFVLPILMFCLEQE 36 (252)
Q Consensus 10 ~~~~a~tgsGKT~a~~lp~~~~~~~~~ 36 (252)
+++.+|||||||.+ +..+++++..+.
T Consensus 128 ILVTGpTGSGKSTT-lAamId~iN~~~ 153 (353)
T COG2805 128 ILVTGPTGSGKSTT-LAAMIDYINKHK 153 (353)
T ss_pred EEEeCCCCCcHHHH-HHHHHHHHhccC
Confidence 78999999999954 466778776543
No 287
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.06 E-value=0.26 Score=44.53 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=40.0
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHh
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAA 72 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~ 72 (252)
++=+++++..|||||.+.+== +..++..... .. ..-.+||+.|.|-++.-+.+++-.|++.
T Consensus 226 ~~ilVVQGaAGSGKTtiALHR-vAyLlY~~R~--~l--~~k~vlvl~PN~vFleYis~VLPeLGe~ 286 (747)
T COG3973 226 NKILVVQGAAGSGKTTIALHR-VAYLLYGYRG--PL--QAKPVLVLGPNRVFLEYISRVLPELGEE 286 (747)
T ss_pred CCeEEEecCCCCCchhHHHHH-HHHHHhcccc--cc--ccCceEEEcCcHHHHHHHHHhchhhccC
Confidence 455899999999999654211 1122222111 11 1223999999999999999999888754
No 288
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=93.04 E-value=0.088 Score=48.32 Aligned_cols=49 Identities=24% Similarity=0.194 Sum_probs=37.2
Q ss_pred CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l 69 (252)
.++++.||||||||..+++|-+- .-. + .++++=|..|++..+...-++.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL---~~~---------g-S~VV~DpKgE~~~~Ta~~R~~~ 260 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTAL---KYG---------G-PLVCLDPSTEVAPMVCEHRRQA 260 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhh---cCC---------C-CEEEEEChHHHHHHHHHHHHHc
Confidence 58999999999999999999642 211 1 3788889999987776544443
No 289
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=92.98 E-value=0.12 Score=41.57 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=17.8
Q ss_pred cEEEEcCCCchHHHHhHHHHHHH
Q psy7786 9 DIIGIAFTGSGKTLVFVLPILMF 31 (252)
Q Consensus 9 d~~~~a~tgsGKT~a~~lp~~~~ 31 (252)
.+++.+++||||| +|++-++..
T Consensus 15 r~viIG~sGSGKT-~li~~lL~~ 36 (241)
T PF04665_consen 15 RMVIIGKSGSGKT-TLIKSLLYY 36 (241)
T ss_pred eEEEECCCCCCHH-HHHHHHHHh
Confidence 6889999999999 666666644
No 290
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=92.91 E-value=0.37 Score=39.20 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=33.9
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~ 67 (252)
+++++++.+++|+|||.-.. .+-+.+.. .+.+++ .+++.||+.++.....
T Consensus 104 ~~~nl~l~G~~G~GKThLa~-Ai~~~l~~----------~g~sv~-f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAI-AIGNELLK----------AGISVL-FITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHH----------cCCeEE-EEEHHHHHHHHHHHHh
Confidence 68899999999999994432 23344432 144555 5578889888766544
No 291
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.90 E-value=0.21 Score=38.20 Aligned_cols=48 Identities=25% Similarity=0.275 Sum_probs=29.2
Q ss_pred EEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 10 IIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69 (252)
Q Consensus 10 ~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l 69 (252)
+++.+++|||||. +.+-++..... .+..++|++ +-|-..++.+.++.+
T Consensus 2 ~li~G~~G~GKT~-l~~~~~~~~~~----------~g~~v~~~s-~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTT-FALQFLYAGLA----------RGEPGLYVT-LEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHH-HHHHHHHHHHH----------CCCcEEEEE-CCCCHHHHHHHHHHc
Confidence 6889999999993 33333322222 244577775 445666666655544
No 292
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=92.87 E-value=0.29 Score=45.70 Aligned_cols=69 Identities=28% Similarity=0.313 Sum_probs=49.3
Q ss_pred hHHHHhhhhhhhcC----CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHH-H
Q psy7786 168 TPIQVQGIPAALSG----RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ-Y 242 (252)
Q Consensus 168 ~~iQ~~~~p~~~~~----~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~-~ 242 (252)
..-|..+...+... ...++...||||||..|+ ..+...+.+ |.++||++|-..+..|+.+.++ +
T Consensus 200 n~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl-~~i~~~L~~----------GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 200 NQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYL-EAIAKVLAQ----------GKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred CHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHH-HHHHHHHHc----------CCEEEEEeccccchHHHHHHHHHH
Confidence 34555555554433 678899999999998774 444444443 6789999999999999998886 4
Q ss_pred HHhhC
Q psy7786 243 YCAAL 247 (252)
Q Consensus 243 l~~~~ 247 (252)
|+..+
T Consensus 269 Fg~~v 273 (730)
T COG1198 269 FGAKV 273 (730)
T ss_pred hCCCh
Confidence 55443
No 293
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=92.81 E-value=0.42 Score=46.18 Aligned_cols=49 Identities=22% Similarity=0.137 Sum_probs=33.2
Q ss_pred CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q psy7786 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 66 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~ 66 (252)
.-++++-..|.|||.-..+-+-+.+.... .-++|||||+ .|..|=..++
T Consensus 170 ~R~LLADEvGLGKTIeAglil~~l~~~g~---------~~rvLIVvP~-sL~~QW~~El 218 (956)
T PRK04914 170 PRVLLADEVGLGKTIEAGMIIHQQLLTGR---------AERVLILVPE-TLQHQWLVEM 218 (956)
T ss_pred CCEEEEeCCcCcHHHHHHHHHHHHHHcCC---------CCcEEEEcCH-HHHHHHHHHH
Confidence 35889999999999776555444333221 2369999998 6876654444
No 294
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.75 E-value=0.083 Score=37.74 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a 23 (252)
+..+++.+|+|||||..
T Consensus 2 ~~~~~l~G~~G~GKTtl 18 (148)
T smart00382 2 GEVILIVGPPGSGKTTL 18 (148)
T ss_pred CCEEEEECCCCCcHHHH
Confidence 67899999999999944
No 295
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=92.68 E-value=0.61 Score=36.73 Aligned_cols=72 Identities=21% Similarity=0.233 Sum_probs=46.8
Q ss_pred hHHHHhhhhhhhcCCc-EEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 168 TPIQVQGIPAALSGRD-IIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 242 (252)
Q Consensus 168 ~~iQ~~~~p~~~~~~~-~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~ 242 (252)
.+-|..++...+.... .++.+++|+|||.... .++..+..... ......+.++|+.++|..-++.+.+.+.+
T Consensus 3 n~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~--~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 3 NESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFK--SRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH---------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchh--hhhhhccccceeecCCchhHHHHHHHHHh
Confidence 3567888888888887 8899999999985422 33333321000 00113466899999999999999988876
No 296
>PRK06921 hypothetical protein; Provisional
Probab=92.67 E-value=0.51 Score=38.70 Aligned_cols=49 Identities=20% Similarity=0.076 Sum_probs=29.6
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~ 65 (252)
.+..+++.+++|+|||... ..+.+.+.... +..++++. ..++..++...
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~~~~---------g~~v~y~~-~~~l~~~l~~~ 164 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELMRKK---------GVPVLYFP-FVEGFGDLKDD 164 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHhhhc---------CceEEEEE-HHHHHHHHHHH
Confidence 4678999999999999322 23344443321 34566654 55666665443
No 297
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=92.50 E-value=0.084 Score=48.75 Aligned_cols=45 Identities=29% Similarity=0.270 Sum_probs=35.2
Q ss_pred CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHH
Q psy7786 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~ 65 (252)
+++++.|+||||||..|++|.+-.. +-.++|+=|-.|+.......
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~-------------~~S~VV~D~KGE~~~~Tag~ 220 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSW-------------GHSSVITDLKGELWALTAGW 220 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhC-------------CCCEEEEeCcHHHHHHHHHH
Confidence 5799999999999999999987421 22488899999997655443
No 298
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=92.49 E-value=0.31 Score=48.66 Aligned_cols=56 Identities=27% Similarity=0.249 Sum_probs=42.2
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l 69 (252)
.|++++|.|..|||||...+-=++..+.... .--+.|+++=|+.-|..+.+.+..-
T Consensus 13 ~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~--------~~~~il~~tFt~~aa~e~~~ri~~~ 68 (1232)
T TIGR02785 13 RGQNILVSASAGSGKTAVLVERIIKKILRGV--------DIDRLLVVTFTNAAAREMKERIEEA 68 (1232)
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHHHhcCC--------CHhhEEEEeccHHHHHHHHHHHHHH
Confidence 5889999999999999877666666554321 1125899999999998877777553
No 299
>PRK13764 ATPase; Provisional
Probab=92.47 E-value=0.18 Score=46.08 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=20.7
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCL 33 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~ 33 (252)
.+++++++++|||||| +++-.+++.+.
T Consensus 256 ~~~~ILIsG~TGSGKT-Tll~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKS-TFAQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHH-HHHHHHHHHHh
Confidence 4678999999999999 45455666554
No 300
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=92.39 E-value=0.36 Score=45.06 Aligned_cols=55 Identities=27% Similarity=0.223 Sum_probs=41.0
Q ss_pred CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHh
Q psy7786 182 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCA 245 (252)
Q Consensus 182 ~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~ 245 (252)
+..++..++|+|||...+.-.. .+... ...+++||++++++|.+|+.+.+++++.
T Consensus 264 ~~gli~~~TGsGKT~t~~~la~-~l~~~--------~~~~~vl~lvdR~~L~~Q~~~~f~~~~~ 318 (667)
T TIGR00348 264 RGGLIWHTQGSGKTLTMLFAAR-KALEL--------LKNPKVFFVVDRRELDYQLMKEFQSLQK 318 (667)
T ss_pred ceeEEEEecCCCccHHHHHHHH-HHHhh--------cCCCeEEEEECcHHHHHHHHHHHHhhCC
Confidence 5688889999999976443322 22221 2357899999999999999999988764
No 301
>PRK10536 hypothetical protein; Provisional
Probab=92.26 E-value=0.23 Score=40.36 Aligned_cols=45 Identities=13% Similarity=0.118 Sum_probs=29.7
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRE 57 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptre 57 (252)
+.++.-+++.+++|||||+.-..-.++.+.... .-+.+|.-|+-+
T Consensus 71 l~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~---------~~kIiI~RP~v~ 115 (262)
T PRK10536 71 IESKQLIFATGEAGCGKTWISAAKAAEALIHKD---------VDRIIVTRPVLQ 115 (262)
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC---------eeEEEEeCCCCC
Confidence 455667889999999999776666665554321 234555557654
No 302
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.22 E-value=0.1 Score=40.33 Aligned_cols=21 Identities=33% Similarity=0.407 Sum_probs=17.8
Q ss_pred ccCCCcEEEEcCCCchHHHHh
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVF 24 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~ 24 (252)
+..|+.+++.++||||||...
T Consensus 22 v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 22 VEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred HhCCCEEEEECCCCCCHHHHH
Confidence 457899999999999999543
No 303
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.20 E-value=0.24 Score=42.21 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=26.6
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELA 59 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa 59 (252)
.+..+++++|||||||... -.++..+... .+.+.+.+--..|+.
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~~~---------~~~~i~tiEdp~E~~ 164 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYINKN---------AAGHIITIEDPIEYV 164 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhCcC---------CCCEEEEEcCChhhh
Confidence 4667999999999999543 3344444221 123466665555543
No 304
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=92.15 E-value=0.11 Score=47.85 Aligned_cols=49 Identities=24% Similarity=0.198 Sum_probs=36.7
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 68 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~ 68 (252)
..++++.|+||||||..+++|-+- .- +-.++|+=|-.|++..+...-++
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL---~~----------~gS~VV~DpKgEl~~~Ta~~R~~ 272 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTAL---KW----------GGPLVVLDPSTEVAPMVSEHRRD 272 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhh---cC----------CCCEEEEeCcHHHHHHHHHHHHH
Confidence 358899999999999999999652 11 11377777999998776664443
No 305
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.12 E-value=0.79 Score=39.72 Aligned_cols=62 Identities=26% Similarity=0.289 Sum_probs=33.0
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEc--CcHHHHHHHHHHHHHHHHhCCCCc
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIIC--PSRELARQTHDIIQYYCAALPIPL 77 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~--ptreLa~q~~~~~~~l~~~~~~~~ 77 (252)
.++.+++.+|||+|||.+..-=.......... .+-++.+++ +.|.-|..+ ++.+++.+|.++
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~-------~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv 236 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDD-------KSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPV 236 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhcc-------CCCeEEEEeccCccHHHHHH---HHHHhhcCCcce
Confidence 35678999999999996543211111111100 133444444 444444333 667777777444
No 306
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=92.11 E-value=0.43 Score=44.13 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=35.7
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHH--HHHHHHHHHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRE--LARQTHDIIQYYC 70 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptre--La~q~~~~~~~l~ 70 (252)
..+++++.++||+|||..+.+ ++...... +..++++=|-.+ |...++..++..+
T Consensus 175 ~~~H~lv~G~TGsGKT~l~~~-l~~q~i~~----------g~~viv~DpKgD~~l~~~~~~~~~~~G 230 (634)
T TIGR03743 175 RVGHTLVLGTTGVGKTRLAEL-LITQDIRR----------GDVVIVIDPKGDADLKRRMRAEAKRAG 230 (634)
T ss_pred CCCcEEEECCCCCCHHHHHHH-HHHHHHHc----------CCeEEEEeCCCchHHHHHHHHHHHHhC
Confidence 457899999999999977644 44333331 345677777765 6666666665553
No 307
>KOG0351|consensus
Probab=92.07 E-value=0.22 Score=47.86 Aligned_cols=72 Identities=32% Similarity=0.426 Sum_probs=59.1
Q ss_pred HHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHH
Q psy7786 155 LVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELAR 234 (252)
Q Consensus 155 l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~ 234 (252)
+.......|.+...+-|..++.+++.|+|.++..+||.||.++|-+|.+. .++-+||+.|-..|.+
T Consensus 253 ~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l--------------~~gitvVISPL~SLm~ 318 (941)
T KOG0351|consen 253 ELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL--------------LGGVTVVISPLISLMQ 318 (941)
T ss_pred HHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc--------------cCCceEEeccHHHHHH
Confidence 33344555788888999999999999999999999999999999888873 1336899999999888
Q ss_pred HHHHHH
Q psy7786 235 QTHDII 240 (252)
Q Consensus 235 ~i~~~l 240 (252)
.....|
T Consensus 319 DQv~~L 324 (941)
T KOG0351|consen 319 DQVTHL 324 (941)
T ss_pred HHHHhh
Confidence 777666
No 308
>PRK12377 putative replication protein; Provisional
Probab=91.98 E-value=0.49 Score=38.34 Aligned_cols=46 Identities=15% Similarity=0.214 Sum_probs=27.8
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHD 64 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~ 64 (252)
..++++.+++|+|||.. +..+.+.+... +..+++ ++..+|..++..
T Consensus 101 ~~~l~l~G~~GtGKThL-a~AIa~~l~~~----------g~~v~~-i~~~~l~~~l~~ 146 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHL-AAAIGNRLLAK----------GRSVIV-VTVPDVMSRLHE 146 (248)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHHc----------CCCeEE-EEHHHHHHHHHH
Confidence 35799999999999932 22333444332 333444 456677776654
No 309
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=91.97 E-value=0.35 Score=38.87 Aligned_cols=53 Identities=13% Similarity=0.111 Sum_probs=32.9
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l 69 (252)
-.|.-+++.+++|||||.-..--+.+.+ . ++-.++|++ +-|-..|+.+.+..+
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~-~----------~ge~~lyvs-~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGL-Q----------MGEPGIYVA-LEEHPVQVRRNMAQF 71 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHH-H----------cCCcEEEEE-eeCCHHHHHHHHHHh
Confidence 3577899999999999942211122222 1 244588887 556666666665544
No 310
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=91.81 E-value=0.35 Score=41.68 Aligned_cols=28 Identities=29% Similarity=0.255 Sum_probs=19.9
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLE 34 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~~ 34 (252)
.+..+++++|||||||. ++-.+++.+..
T Consensus 148 ~~GlilI~G~TGSGKTT-~l~al~~~i~~ 175 (372)
T TIGR02525 148 AAGLGLICGETGSGKST-LAASIYQHCGE 175 (372)
T ss_pred cCCEEEEECCCCCCHHH-HHHHHHHHHHh
Confidence 34468999999999994 44456666543
No 311
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=91.78 E-value=0.14 Score=43.14 Aligned_cols=46 Identities=24% Similarity=0.112 Sum_probs=29.6
Q ss_pred CCCcEEEEcCCCchHHHH-hHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV-FVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHD 64 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a-~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~ 64 (252)
...++++++.||||||.. +.+..+ +.. .. +++.+--|.||-.+.-.
T Consensus 172 ~r~NILisGGTGSGKTTlLNal~~~--i~~----------~e-RvItiEDtaELql~~ph 218 (355)
T COG4962 172 IRCNILISGGTGSGKTTLLNALSGF--IDS----------DE-RVITIEDTAELQLAHPH 218 (355)
T ss_pred hceeEEEeCCCCCCHHHHHHHHHhc--CCC----------cc-cEEEEeehhhhccCCCc
Confidence 345999999999999942 222211 111 12 78999889888655433
No 312
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=91.76 E-value=0.68 Score=45.11 Aligned_cols=69 Identities=23% Similarity=0.228 Sum_probs=41.8
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeC
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIG 84 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g 84 (252)
.+|.+.|++-..|.|||+.- +.++..+..... ..-..|||+|..-| .|=.+.++++ .+ .+++..++|
T Consensus 186 ~~g~gGILADEMGLGKTlQa-IalL~~L~~~~~-------~~gp~LIVvP~SlL-~nW~~Ei~kw---~p-~l~v~~~~G 252 (1033)
T PLN03142 186 ENGINGILADEMGLGKTLQT-ISLLGYLHEYRG-------ITGPHMVVAPKSTL-GNWMNEIRRF---CP-VLRAVKFHG 252 (1033)
T ss_pred hcCCCEEEEeCCCccHHHHH-HHHHHHHHHhcC-------CCCCEEEEeChHHH-HHHHHHHHHH---CC-CCceEEEeC
Confidence 46788999999999999753 333333332211 12247999997644 4444444444 34 367777777
Q ss_pred Cc
Q psy7786 85 GV 86 (252)
Q Consensus 85 ~~ 86 (252)
..
T Consensus 253 ~~ 254 (1033)
T PLN03142 253 NP 254 (1033)
T ss_pred CH
Confidence 63
No 313
>PRK06526 transposase; Provisional
Probab=91.73 E-value=0.26 Score=40.08 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=16.9
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..++++++.+|+|+|||..
T Consensus 95 i~~~~nlll~Gp~GtGKThL 114 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHL 114 (254)
T ss_pred hhcCceEEEEeCCCCchHHH
Confidence 34678999999999999943
No 314
>PRK05973 replicative DNA helicase; Provisional
Probab=91.72 E-value=0.35 Score=38.89 Aligned_cols=54 Identities=17% Similarity=0.226 Sum_probs=30.9
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l 69 (252)
+..|.-+++.+++|+||| +|.+=.+..... ++-+++|++ .=|=..|+.+.+..+
T Consensus 61 l~~Gsl~LIaG~PG~GKT-~lalqfa~~~a~----------~Ge~vlyfS-lEes~~~i~~R~~s~ 114 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKT-LLGLELAVEAMK----------SGRTGVFFT-LEYTEQDVRDRLRAL 114 (237)
T ss_pred CCCCCEEEEEeCCCCCHH-HHHHHHHHHHHh----------cCCeEEEEE-EeCCHHHHHHHHHHc
Confidence 345777899999999999 444443333222 134577775 222234555555443
No 315
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=91.70 E-value=0.75 Score=35.37 Aligned_cols=63 Identities=19% Similarity=0.079 Sum_probs=32.5
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 70 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~ 70 (252)
.|.=+++.|++|+||| +|++-+...+.....-.........+++++..--. ..++.+.+..+.
T Consensus 31 ~g~l~~i~g~~g~GKT-~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~ 93 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKT-TLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALL 93 (193)
T ss_dssp TTSEEEEEECSTSSHH-HHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHH-HHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHh
Confidence 5666899999999999 55555555554321110101113556888764333 445666666554
No 316
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=91.68 E-value=0.38 Score=45.10 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=37.9
Q ss_pred cEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHh
Q psy7786 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAA 72 (252)
Q Consensus 9 d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~ 72 (252)
++=|.-+||||||.+|+=-|+.. .. .. +-.+-+|++||.+.-.-+....+...++
T Consensus 76 NiDI~METGTGKTy~YlrtmfeL-hk-~Y-------G~~KFIivVPs~AIkeGv~~~s~~~~eh 130 (985)
T COG3587 76 NIDILMETGTGKTYTYLRTMFEL-HK-KY-------GLFKFIIVVPSLAIKEGVFLTSKETTEH 130 (985)
T ss_pred eeeEEEecCCCceeeHHHHHHHH-HH-Hh-------CceeEEEEeccHHHHhhhHHHHHHHHHH
Confidence 45567889999999998666642 22 21 4567999999998876655555544443
No 317
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=91.65 E-value=0.45 Score=44.89 Aligned_cols=58 Identities=22% Similarity=0.183 Sum_probs=39.9
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCA 71 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~ 71 (252)
..+++|.|..|||||.+..-=+...+..... ..-+.|+++-|+.-|..+.+.+..+..
T Consensus 17 ~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i-------~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 17 EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNV-------APWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCC-------CHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 4579999999999996654443333321111 112589999999999999888877643
No 318
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=91.65 E-value=0.32 Score=39.62 Aligned_cols=53 Identities=19% Similarity=0.260 Sum_probs=34.7
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l 69 (252)
-.|+-+++.+++||||| .|.+=.+...... +-.+++++ +.|...++.+.+..+
T Consensus 21 p~g~~~lI~G~pGsGKT-~f~~qfl~~~~~~----------ge~vlyvs-~~e~~~~l~~~~~~~ 73 (260)
T COG0467 21 PRGSVVLITGPPGTGKT-IFALQFLYEGARE----------GEPVLYVS-TEESPEELLENARSF 73 (260)
T ss_pred cCCcEEEEEcCCCCcHH-HHHHHHHHHHHhc----------CCcEEEEE-ecCCHHHHHHHHHHc
Confidence 46788999999999999 3433333222221 33466664 777777777777655
No 319
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=91.40 E-value=0.15 Score=43.39 Aligned_cols=44 Identities=20% Similarity=0.179 Sum_probs=29.2
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELA 59 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa 59 (252)
+..++++++.++||||||.. +-.++..+.. ..+.+++--+.||.
T Consensus 175 v~~~~~ili~G~tGsGKTTl-l~al~~~i~~-----------~~riv~iEd~~El~ 218 (340)
T TIGR03819 175 VAARLAFLISGGTGSGKTTL-LSALLALVAP-----------DERIVLVEDAAELR 218 (340)
T ss_pred HhCCCeEEEECCCCCCHHHH-HHHHHccCCC-----------CCcEEEECCcceec
Confidence 45678999999999999943 3333333211 23567777888874
No 320
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=91.35 E-value=0.51 Score=40.38 Aligned_cols=51 Identities=22% Similarity=0.268 Sum_probs=34.8
Q ss_pred EEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 10 IIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69 (252)
Q Consensus 10 ~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l 69 (252)
++|.+..|||||+.. +-++..+... ..+..++++++..+|...+++.+..-
T Consensus 4 ~~I~G~aGTGKTvla-~~l~~~l~~~--------~~~~~~~~l~~n~~l~~~l~~~l~~~ 54 (352)
T PF09848_consen 4 ILITGGAGTGKTVLA-LNLAKELQNS--------EEGKKVLYLCGNHPLRNKLREQLAKK 54 (352)
T ss_pred EEEEecCCcCHHHHH-HHHHHHhhcc--------ccCCceEEEEecchHHHHHHHHHhhh
Confidence 688999999999543 2222222111 13567999999999999887777543
No 321
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=91.33 E-value=1.6 Score=42.62 Aligned_cols=87 Identities=22% Similarity=0.218 Sum_probs=64.5
Q ss_pred CHHHHHHHHHCCCCCChHHHHhhhhhhhcC------CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEE
Q psy7786 152 PESLVRALEAKGIKKPTPIQVQGIPAALSG------RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLI 225 (252)
Q Consensus 152 ~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~------~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LI 225 (252)
..+..+.+....--.-|+-|..++...... -|-++|...|-|||...+-....-++. |.|+.|
T Consensus 580 d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~-----------GKQVAv 648 (1139)
T COG1197 580 DTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD-----------GKQVAV 648 (1139)
T ss_pred ChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC-----------CCeEEE
Confidence 333455555554445677888888665532 489999999999998877766655443 679999
Q ss_pred EcCcHHHHHHHHHHHHHHHhhCCC
Q psy7786 226 ICPSRELARQTHDIIQYYCAALPI 249 (252)
Q Consensus 226 f~~tr~~a~~i~~~l~~l~~~~~i 249 (252)
++||--||+|=++.+++.=+.+||
T Consensus 649 LVPTTlLA~QHy~tFkeRF~~fPV 672 (1139)
T COG1197 649 LVPTTLLAQQHYETFKERFAGFPV 672 (1139)
T ss_pred EcccHHhHHHHHHHHHHHhcCCCe
Confidence 999999999999888876666665
No 322
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.32 E-value=0.18 Score=31.32 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=14.9
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
.|...++.+++|||||..
T Consensus 22 ~g~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTL 39 (62)
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 356799999999999953
No 323
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=91.27 E-value=0.34 Score=38.55 Aligned_cols=43 Identities=35% Similarity=0.380 Sum_probs=29.8
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELA 59 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa 59 (252)
++++.|.+.||||||.+ +--+++.+... .+...+|+=|.-|=+
T Consensus 23 ~~H~~I~G~TGsGKS~~-~~~ll~~l~~~---------~~~~~ii~D~~GEY~ 65 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNT-VKVLLEELLKK---------KGAKVIIFDPHGEYA 65 (229)
T ss_pred cceEEEECCCCCCHHHH-HHHHHHHHHhc---------CCCCEEEEcCCCcch
Confidence 57899999999999944 34455555531 255678887776644
No 324
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=91.23 E-value=0.47 Score=37.79 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=15.4
Q ss_pred cCCCcEEEEcCCCchHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~ 22 (252)
-.|.-+++.+++|+|||.
T Consensus 18 ~~G~~~~i~G~~G~GKT~ 35 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTI 35 (229)
T ss_pred cCCeEEEEECCCCCChHH
Confidence 357789999999999983
No 325
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.21 E-value=0.62 Score=37.29 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=15.9
Q ss_pred cCCCcEEEEcCCCchHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a 23 (252)
-.|.-+++.+++|+|||..
T Consensus 22 ~~g~~~~i~G~~G~GKTtl 40 (230)
T PRK08533 22 PAGSLILIEGDESTGKSIL 40 (230)
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 4577899999999999943
No 326
>PRK06835 DNA replication protein DnaC; Validated
Probab=91.16 E-value=0.63 Score=39.40 Aligned_cols=46 Identities=24% Similarity=0.249 Sum_probs=28.5
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 63 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~ 63 (252)
.++++++.++||+|||.. +..+.+.+... +..++++ +..+|..++.
T Consensus 182 ~~~~Lll~G~~GtGKThL-a~aIa~~l~~~----------g~~V~y~-t~~~l~~~l~ 227 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFL-SNCIAKELLDR----------GKSVIYR-TADELIEILR 227 (329)
T ss_pred cCCcEEEECCCCCcHHHH-HHHHHHHHHHC----------CCeEEEE-EHHHHHHHHH
Confidence 457899999999999952 22344444432 3456655 4566655543
No 327
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=91.15 E-value=1.5 Score=41.84 Aligned_cols=72 Identities=24% Similarity=0.230 Sum_probs=57.2
Q ss_pred CChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHh
Q psy7786 166 KPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCA 245 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~ 245 (252)
.|..+|.. ....-...-+....||.|||+...+|..-..+. |..+-|++.+..||.+=++++..+-+
T Consensus 85 r~ydVQli--Ggl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~-----------GkgVhVVTvNdYLA~RDae~m~~vy~ 151 (939)
T PRK12902 85 RHFDVQLI--GGMVLHEGQIAEMKTGEGKTLVATLPSYLNALT-----------GKGVHVVTVNDYLARRDAEWMGQVHR 151 (939)
T ss_pred CcchhHHH--hhhhhcCCceeeecCCCChhHHHHHHHHHHhhc-----------CCCeEEEeCCHHHHHhHHHHHHHHHH
Confidence 67777774 343445566888899999999988888754433 45699999999999999999999999
Q ss_pred hCCCC
Q psy7786 246 ALPIG 250 (252)
Q Consensus 246 ~~~i~ 250 (252)
.+|+.
T Consensus 152 ~LGLt 156 (939)
T PRK12902 152 FLGLS 156 (939)
T ss_pred HhCCe
Confidence 99875
No 328
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=91.09 E-value=0.11 Score=42.79 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=17.0
Q ss_pred ccCCCcEEEEcCCCchHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~ 22 (252)
+.+|+.+++++|+|||||.
T Consensus 30 ~~~~~pvLl~G~~GtGKT~ 48 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTS 48 (272)
T ss_dssp HHCTEEEEEESSTTSSHHH
T ss_pred HHcCCcEEEECCCCCchhH
Confidence 4578999999999999995
No 329
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=91.07 E-value=0.44 Score=37.86 Aligned_cols=51 Identities=18% Similarity=0.122 Sum_probs=28.2
Q ss_pred cCCCcEEEEcCCCchHHHHhHHH-HHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLP-ILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp-~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~ 67 (252)
-.|.-+++.+++|||||. |.+= +.+.+... +-++++++ +-|=..++.+.++
T Consensus 17 p~gs~~li~G~~GsGKT~-l~~q~l~~~~~~~----------ge~vlyvs-~ee~~~~l~~~~~ 68 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTT-LALQFLYNGLKNF----------GEKVLYVS-FEEPPEELIENMK 68 (226)
T ss_dssp ETTSEEEEEESTTSSHHH-HHHHHHHHHHHHH----------T--EEEEE-SSS-HHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCcHH-HHHHHHHHhhhhc----------CCcEEEEE-ecCCHHHHHHHHH
Confidence 357789999999999993 3332 22333220 22477777 3333444444444
No 330
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=91.04 E-value=0.49 Score=39.17 Aligned_cols=19 Identities=32% Similarity=0.298 Sum_probs=15.9
Q ss_pred CCCcEEEEcCCCchHHHHh
Q psy7786 6 NSRDIIGIAFTGSGKTLVF 24 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~ 24 (252)
.++-+++.+|||+|||.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTL 211 (282)
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5678999999999999543
No 331
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=91.03 E-value=0.49 Score=46.91 Aligned_cols=55 Identities=22% Similarity=0.280 Sum_probs=41.6
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHHHhh-cCCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQE-TKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~-~~~~~~~~~~~~~lil~ptreLa~q~~~~~~ 67 (252)
.+.++++.|..|||||.+-..=++..++... . +--+.|+++-|+.=|.....++.
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~-------~v~~ILvvTFT~aAa~Emk~RI~ 70 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPL-------DVDEILVVTFTKAAAAEMKERIR 70 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCC-------ChhHeeeeeccHHHHHHHHHHHH
Confidence 4679999999999999887777777776632 1 22358999999988877666553
No 332
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=91.03 E-value=0.45 Score=38.95 Aligned_cols=40 Identities=33% Similarity=0.239 Sum_probs=25.7
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEc
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIIC 53 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ 53 (252)
+..|.-+++.+++|+||| +|++-+...+... .+-.+++++
T Consensus 27 ~~~g~~~~i~g~~G~GKT-~l~~~~~~~~~~~---------~g~~vl~iS 66 (271)
T cd01122 27 LRKGELIILTAGTGVGKT-TFLREYALDLITQ---------HGVRVGTIS 66 (271)
T ss_pred EcCCcEEEEEcCCCCCHH-HHHHHHHHHHHHh---------cCceEEEEE
Confidence 356778899999999999 4444433333222 144577776
No 333
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.00 E-value=1.1 Score=39.05 Aligned_cols=19 Identities=37% Similarity=0.373 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCchHHHHhH
Q psy7786 7 SRDIIGIAFTGSGKTLVFV 25 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~ 25 (252)
++.+.+.+|||+|||.+..
T Consensus 241 ~~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLA 259 (436)
T ss_pred CcEEEEECCCCCcHHHHHH
Confidence 4678999999999996543
No 334
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=90.87 E-value=1.4 Score=35.17 Aligned_cols=73 Identities=18% Similarity=0.285 Sum_probs=49.7
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHH-HHHHHhCCCCcceeeee
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII-QYYCAALPIPLRTCLAI 83 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~-~~l~~~~~~~~~~~~~~ 83 (252)
-+|+|.+.+--.|.||| +-++|++..++.+.. --+.+++| ++|..|..+.+ .+++.-.+.++...-+.
T Consensus 39 ~~~~n~v~QlnMGeGKT-sVI~Pmla~~LAdg~---------~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFs 107 (229)
T PF12340_consen 39 PSGKNSVMQLNMGEGKT-SVIVPMLALALADGS---------RLVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFS 107 (229)
T ss_pred CCCCCeEeeecccCCcc-chHHHHHHHHHcCCC---------cEEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEeccc
Confidence 36899999999999999 778999998887653 23445554 55888887777 45555555334444444
Q ss_pred CCccc
Q psy7786 84 GGVPM 88 (252)
Q Consensus 84 g~~~~ 88 (252)
.++..
T Consensus 108 R~~~~ 112 (229)
T PF12340_consen 108 RSTPL 112 (229)
T ss_pred CCCCC
Confidence 44443
No 335
>PRK09183 transposase/IS protein; Provisional
Probab=90.84 E-value=0.65 Score=37.92 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=16.9
Q ss_pred ccCCCcEEEEcCCCchHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~ 22 (252)
+.+|.++++.+|+|+|||.
T Consensus 99 i~~~~~v~l~Gp~GtGKTh 117 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTH 117 (259)
T ss_pred hhcCCeEEEEeCCCCCHHH
Confidence 5678899999999999994
No 336
>PRK04328 hypothetical protein; Provisional
Probab=90.76 E-value=0.58 Score=37.93 Aligned_cols=51 Identities=16% Similarity=0.194 Sum_probs=30.4
Q ss_pred CCCcEEEEcCCCchHHHHhHHH-HHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLP-ILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp-~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l 69 (252)
.|.-+++.+++|||||. |.+= +.+.+. ++-.++|++ +-|-..++.+.++.+
T Consensus 22 ~gs~ili~G~pGsGKT~-l~~~fl~~~~~-----------~ge~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSI-FSQQFLWNGLQ-----------MGEPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCCCCHHH-HHHHHHHHHHh-----------cCCcEEEEE-eeCCHHHHHHHHHHc
Confidence 57789999999999983 2222 222221 234577776 555555555555544
No 337
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=90.75 E-value=0.16 Score=36.39 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=11.8
Q ss_pred cCCCcEEEEcCCCchHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a 23 (252)
.+++-+++.+++|+|||..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~ 20 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTL 20 (131)
T ss_dssp -----EEEEE-TTSSHHHH
T ss_pred CCCcccEEEcCCCCCHHHH
Confidence 3567899999999999954
No 338
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.72 E-value=0.15 Score=44.99 Aligned_cols=23 Identities=35% Similarity=0.257 Sum_probs=16.0
Q ss_pred EEEEcCCCchHHHHhHHHHHHHHH
Q psy7786 10 IIGIAFTGSGKTLVFVLPILMFCL 33 (252)
Q Consensus 10 ~~~~a~tgsGKT~a~~lp~~~~~~ 33 (252)
+++.+|||||||.+. -.+++.+.
T Consensus 261 iLvTGPTGSGKTTTL-Y~~L~~ln 283 (500)
T COG2804 261 ILVTGPTGSGKTTTL-YAALSELN 283 (500)
T ss_pred EEEeCCCCCCHHHHH-HHHHHHhc
Confidence 789999999999552 23344443
No 339
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=90.44 E-value=0.74 Score=42.42 Aligned_cols=54 Identities=17% Similarity=0.079 Sum_probs=38.0
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcH--HHHHHHHHHHHHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSR--ELARQTHDIIQYYCA 71 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptr--eLa~q~~~~~~~l~~ 71 (252)
..+.++.++||+|||..+.+=+.|.+.. +..++++=|-. |+...++..++..++
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~~-----------g~~vi~fDpkgD~el~~~~~~~~~~~GR 235 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIRR-----------GDVVIVFDPKGDADLLKRMYAEAKRAGR 235 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHHc-----------CCeEEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 4578999999999998776655555532 44577777877 566666666666554
No 340
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=90.38 E-value=1.3 Score=40.78 Aligned_cols=58 Identities=17% Similarity=0.119 Sum_probs=37.7
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 68 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~ 68 (252)
.++++-.++.+++|||||.+- .-++..+..... ....++++.+||.--|..+.+.+..
T Consensus 164 a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~~------~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 164 ALTRRISVISGGPGTGKTTTV-AKLLAALIQLAD------GERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred HhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhcC------CCCcEEEEECCcHHHHHHHHHHHHh
Confidence 355677899999999999542 222222222111 0245788899999988888776654
No 341
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.27 E-value=1.2 Score=39.09 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=16.4
Q ss_pred cCCCcEEEEcCCCchHHHHh
Q psy7786 5 RNSRDIIGIAFTGSGKTLVF 24 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~ 24 (252)
..|+-+++.+|||+|||.+-
T Consensus 219 ~~~~~i~~vGptGvGKTTt~ 238 (424)
T PRK05703 219 KQGGVVALVGPTGVGKTTTL 238 (424)
T ss_pred cCCcEEEEECCCCCCHHHHH
Confidence 35778999999999999543
No 342
>PRK08116 hypothetical protein; Validated
Probab=89.96 E-value=1 Score=36.98 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=26.7
Q ss_pred CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHH
Q psy7786 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 63 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~ 63 (252)
.-+++.+++|||||... ..+.+.+... +..++++ +..+|..++.
T Consensus 115 ~gl~l~G~~GtGKThLa-~aia~~l~~~----------~~~v~~~-~~~~ll~~i~ 158 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLA-ACIANELIEK----------GVPVIFV-NFPQLLNRIK 158 (268)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHHHc----------CCeEEEE-EHHHHHHHHH
Confidence 44999999999999433 2455555442 2335444 4566655443
No 343
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=89.95 E-value=1.1 Score=36.67 Aligned_cols=17 Identities=24% Similarity=0.194 Sum_probs=14.7
Q ss_pred CCCcEEEEcCCCchHHH
Q psy7786 6 NSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~ 22 (252)
.|.=+++.+++|+|||.
T Consensus 35 ~gs~~lI~G~pGtGKT~ 51 (259)
T TIGR03878 35 AYSVINITGVSDTGKSL 51 (259)
T ss_pred CCcEEEEEcCCCCCHHH
Confidence 56678999999999993
No 344
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.91 E-value=1.2 Score=39.02 Aligned_cols=62 Identities=18% Similarity=0.163 Sum_probs=35.2
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCC
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIP 76 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~ 76 (252)
..|+-+.+.++||+|||.+...=.-..+.... ...-+++...+.-.+ ..+.+..+++.+|++
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~--------~~~v~~i~~d~~rig--alEQL~~~a~ilGvp 250 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHG--------ADKVALLTTDSYRIG--GHEQLRIYGKLLGVS 250 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--------CCeEEEEecCCcchh--HHHHHHHHHHHcCCc
Confidence 45777899999999999765432222222211 012356666664332 234466777777743
No 345
>PRK08727 hypothetical protein; Validated
Probab=89.88 E-value=0.92 Score=36.37 Aligned_cols=49 Identities=14% Similarity=0.100 Sum_probs=28.8
Q ss_pred cEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69 (252)
Q Consensus 9 d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l 69 (252)
.+++.+++|||||..-. .+.+.+.. .+.+++++. ..++.....+.++.+
T Consensus 43 ~l~l~G~~G~GKThL~~-a~~~~~~~----------~~~~~~y~~-~~~~~~~~~~~~~~l 91 (233)
T PRK08727 43 WLYLSGPAGTGKTHLAL-ALCAAAEQ----------AGRSSAYLP-LQAAAGRLRDALEAL 91 (233)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHH----------cCCcEEEEe-HHHhhhhHHHHHHHH
Confidence 48999999999993322 22223222 134577764 555665555555544
No 346
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=89.86 E-value=0.21 Score=36.31 Aligned_cols=44 Identities=23% Similarity=0.212 Sum_probs=29.4
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT 62 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~ 62 (252)
..|.-+++.++.|+||| +|+-.+...+ +...-|-+||-.|++..
T Consensus 20 ~~~~~i~l~G~lGaGKT-tl~~~l~~~l-------------g~~~~v~SPTf~lv~~Y 63 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKT-TLVQGLLQGL-------------GIQGNVTSPTFTLVNEY 63 (133)
T ss_pred CCCCEEEEEcCCCCCHH-HHHHHHHHHc-------------CCCCcccCCCeeeeeec
Confidence 45667889999999999 5555555433 12234678888777554
No 347
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=89.67 E-value=0.26 Score=35.42 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=15.0
Q ss_pred CCCcEEEEcCCCchHHH
Q psy7786 6 NSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~ 22 (252)
.++.+++.+++|+|||.
T Consensus 18 ~~~~v~i~G~~G~GKT~ 34 (151)
T cd00009 18 PPKNLLLYGPPGTGKTT 34 (151)
T ss_pred CCCeEEEECCCCCCHHH
Confidence 37789999999999993
No 348
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=89.49 E-value=0.4 Score=40.63 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=21.0
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFC 32 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~ 32 (252)
+.||-+++.+|+||||| |..+.+-+.+
T Consensus 63 ~aGrgiLi~GppgTGKT-AlA~gIa~eL 89 (450)
T COG1224 63 MAGRGILIVGPPGTGKT-ALAMGIAREL 89 (450)
T ss_pred ccccEEEEECCCCCcHH-HHHHHHHHHh
Confidence 46889999999999999 4455555555
No 349
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=89.47 E-value=0.23 Score=40.58 Aligned_cols=20 Identities=20% Similarity=0.232 Sum_probs=17.5
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|+++++.+++|||||..
T Consensus 18 l~~g~~vLL~G~~GtGKT~l 37 (262)
T TIGR02640 18 LKSGYPVHLRGPAGTGKTTL 37 (262)
T ss_pred HhcCCeEEEEcCCCCCHHHH
Confidence 56789999999999999943
No 350
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=89.33 E-value=1.4 Score=43.90 Aligned_cols=55 Identities=18% Similarity=0.111 Sum_probs=40.5
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l 69 (252)
.+++++.|..|||||...+-=++..+.... ..-+.++|+-|+.=|..+.+++...
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~~--------~~~~i~~~t~t~~aa~em~~Ri~~~ 64 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNGV--------PPSKILCLTYTKAAAAEMQNRVFDR 64 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcCC--------CCCeEEEEecCHHHHHHHHHHHHHH
Confidence 468999999999999877666665554321 1236899999999998877666543
No 351
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=89.30 E-value=0.32 Score=41.52 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=18.9
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFC 32 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~ 32 (252)
.||-+++.+|+||||| |..+.+-+.+
T Consensus 49 aGr~iLiaGppGtGKT-AlA~~ia~eL 74 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKT-ALAMAIAKEL 74 (398)
T ss_dssp TT-EEEEEE-TTSSHH-HHHHHHHHHC
T ss_pred cCcEEEEeCCCCCCch-HHHHHHHHHh
Confidence 6889999999999999 5555665554
No 352
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=89.23 E-value=0.3 Score=37.51 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCchHHHHhHH
Q psy7786 7 SRDIIGIAFTGSGKTLVFVL 26 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~l 26 (252)
...+++.+|.|||||.-|..
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~ 22 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQ 22 (181)
T ss_dssp --EEEEE-STTSSHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 46799999999999976643
No 353
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=89.20 E-value=1.4 Score=40.46 Aligned_cols=59 Identities=19% Similarity=0.134 Sum_probs=37.8
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 68 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~ 68 (252)
+++++-.++.++.|||||.. +.-++..+...... ....+.++.+||.--|..+.+.+..
T Consensus 157 al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~~-----~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 157 ALKSNFSLITGGPGTGKTTT-VARLLLALVKQSPK-----QGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred HhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhccc-----cCCCcEEEECCcHHHHHHHHHHHHh
Confidence 45677889999999999953 22333333222110 0135789999999888777665544
No 354
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=89.11 E-value=2.1 Score=39.78 Aligned_cols=66 Identities=18% Similarity=0.189 Sum_probs=48.1
Q ss_pred CChHHHHhhhhhhhcC-CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 166 KPTPIQVQGIPAALSG-RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 242 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~~-~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~ 242 (252)
.....|..++...+.. ...++..++|+|||... ..++..+.. .+.++|+.+||..-++.+.+.+..
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~-~~ii~~~~~----------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTL-VELIRQLVK----------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHH-HHHHHHHHH----------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 4467888888777765 56778999999998643 233333322 145799999999999999988865
No 355
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.06 E-value=0.46 Score=38.89 Aligned_cols=25 Identities=32% Similarity=0.209 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFC 32 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~ 32 (252)
+.-+++.++||||||.. +-.+++.+
T Consensus 80 ~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 80 HGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred CCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 34689999999999943 34455444
No 356
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=89.01 E-value=1.7 Score=35.32 Aligned_cols=48 Identities=29% Similarity=0.259 Sum_probs=30.6
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEc---CcHHHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIIC---PSRELARQT 62 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~---ptreLa~q~ 62 (252)
..|.=+++.|.||.||| +|++-+...+.... +..+++++ +-.+++..+
T Consensus 17 ~~g~L~vi~a~pg~GKT-~~~l~ia~~~a~~~---------~~~vly~SlEm~~~~l~~R~ 67 (259)
T PF03796_consen 17 RPGELTVIAARPGVGKT-AFALQIALNAALNG---------GYPVLYFSLEMSEEELAARL 67 (259)
T ss_dssp -TT-EEEEEESTTSSHH-HHHHHHHHHHHHTT---------SSEEEEEESSS-HHHHHHHH
T ss_pred CcCcEEEEEecccCCch-HHHHHHHHHHHHhc---------CCeEEEEcCCCCHHHHHHHH
Confidence 34555789999999999 77777776665532 35688887 334444433
No 357
>KOG1802|consensus
Probab=89.01 E-value=0.78 Score=42.03 Aligned_cols=56 Identities=16% Similarity=0.072 Sum_probs=39.2
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l 69 (252)
+|+..=.++++|.|||||.+-.--+++.+-.. .-.+|+.+|+.--+.|+.+.+.+.
T Consensus 422 VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~----------~~~VLvcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802|consen 422 VLQRPLSLIQGPPGTGKTVTSATIVYHLARQH----------AGPVLVCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred HHcCCceeeecCCCCCceehhHHHHHHHHHhc----------CCceEEEcccchhHHHHHHHHHhc
Confidence 34444568999999999977655555544332 345899999998777777666543
No 358
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=88.99 E-value=1.4 Score=41.04 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=36.6
Q ss_pred cEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 70 (252)
Q Consensus 9 d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~ 70 (252)
..++.+.+|||||+... .+++.. +..+|||+|+.+.|.|+++.++.+.
T Consensus 34 ~~ll~Gl~gs~ka~lia-~l~~~~-------------~r~vLIVt~~~~~A~~l~~dL~~~~ 81 (652)
T PRK05298 34 HQTLLGVTGSGKTFTMA-NVIARL-------------QRPTLVLAHNKTLAAQLYSEFKEFF 81 (652)
T ss_pred cEEEEcCCCcHHHHHHH-HHHHHh-------------CCCEEEEECCHHHHHHHHHHHHHhc
Confidence 56789999999997743 233221 2248999999999999999998774
No 359
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=88.91 E-value=2.8 Score=32.58 Aligned_cols=62 Identities=24% Similarity=0.285 Sum_probs=41.5
Q ss_pred hHHHHhhhhhhhcC--CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q psy7786 168 TPIQVQGIPAALSG--RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 240 (252)
Q Consensus 168 ~~iQ~~~~p~~~~~--~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l 240 (252)
++-|..++...+.. +-.++..+.|+|||.. +..+...+... +.++++++||..-+..+.+..
T Consensus 3 ~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~--l~~~~~~~~~~---------g~~v~~~apT~~Aa~~L~~~~ 66 (196)
T PF13604_consen 3 NEEQREAVRAILTSGDRVSVLQGPAGTGKTTL--LKALAEALEAA---------GKRVIGLAPTNKAAKELREKT 66 (196)
T ss_dssp -HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH--HHHHHHHHHHT---------T--EEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH--HHHHHHHHHhC---------CCeEEEECCcHHHHHHHHHhh
Confidence 45577777666543 3466778999999875 33344444432 467999999999999988764
No 360
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=88.70 E-value=1.2 Score=40.53 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=45.7
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHhh
Q psy7786 181 GRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAA 246 (252)
Q Consensus 181 ~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~~ 246 (252)
+.-++++...|||||...+.-+...++..... .+...+|||.|.|-..+.+.+.|-.||+.
T Consensus 226 ~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~-----l~~k~vlvl~PN~vFleYis~VLPeLGe~ 286 (747)
T COG3973 226 NKILVVQGAAGSGKTTIALHRVAYLLYGYRGP-----LQAKPVLVLGPNRVFLEYISRVLPELGEE 286 (747)
T ss_pred CCeEEEecCCCCCchhHHHHHHHHHHhccccc-----cccCceEEEcCcHHHHHHHHHhchhhccC
Confidence 35678888899999998777666655553311 22334999999999999999999877753
No 361
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=88.66 E-value=2 Score=37.36 Aligned_cols=58 Identities=16% Similarity=0.075 Sum_probs=43.0
Q ss_pred cEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHH-HHHHHHHHHHHHHHhCC
Q psy7786 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRE-LARQTHDIIQYYCAALP 74 (252)
Q Consensus 9 d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptre-La~q~~~~~~~l~~~~~ 74 (252)
-.++.+..|||||.+..+-++..++... .+.+++++.+|.. |..-++..+++....+|
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~--------~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g 61 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK--------KQQNILAARKVQNSIRDSVFKDIENLLSIEG 61 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC--------CCcEEEEEehhhhHHHHHHHHHHHHHHHHcC
Confidence 3578899999999999988888777651 2467999999887 55556777766555444
No 362
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=88.56 E-value=0.68 Score=42.28 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=16.5
Q ss_pred ccCCCcEEEEcCCCchHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~ 22 (252)
-.+.+++++.++||||||.
T Consensus 173 ~~e~~h~li~G~tGsGKs~ 191 (566)
T TIGR02759 173 GSETQHILIHGTTGSGKSV 191 (566)
T ss_pred cccccceEEEcCCCCCHHH
Confidence 4567799999999999994
No 363
>KOG1133|consensus
Probab=88.34 E-value=0.45 Score=43.61 Aligned_cols=32 Identities=22% Similarity=0.219 Sum_probs=27.1
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHh
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQ 35 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~ 35 (252)
+-+|+=-|..+|||||||++.+...++.+...
T Consensus 31 Le~GkIgIfESPTGTGKSLSLiCaaltWL~~~ 62 (821)
T KOG1133|consen 31 LEEGKIGIFESPTGTGKSLSLICAALTWLRDF 62 (821)
T ss_pred HhcCCeeeeeCCCCCCchHHHHHHHHHHHHHh
Confidence 45677778899999999999999999888654
No 364
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=88.30 E-value=1 Score=35.18 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=16.4
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCL 33 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~ 33 (252)
+..++++.+.||||||.+... ++..+.
T Consensus 37 ~~~h~li~G~tgsGKS~~l~~-ll~~l~ 63 (205)
T PF01580_consen 37 KNPHLLIAGATGSGKSTLLRT-LLLSLA 63 (205)
T ss_dssp GS-SEEEE--TTSSHHHHHHH-HHHHHH
T ss_pred CCceEEEEcCCCCCccHHHHH-HHHHHH
Confidence 345899999999999955443 443333
No 365
>KOG1942|consensus
Probab=88.24 E-value=0.53 Score=38.92 Aligned_cols=27 Identities=26% Similarity=0.282 Sum_probs=22.1
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFC 32 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~ 32 (252)
+.||-+++.+|.||||| |..+.+-|.+
T Consensus 62 maGravLlaGppgtGKT-AlAlaisqEL 88 (456)
T KOG1942|consen 62 MAGRAVLLAGPPGTGKT-ALALAISQEL 88 (456)
T ss_pred ccCcEEEEecCCCCchh-HHHHHHHHHh
Confidence 57999999999999999 5556666655
No 366
>PTZ00301 uridine kinase; Provisional
Probab=88.24 E-value=0.97 Score=35.67 Aligned_cols=22 Identities=27% Similarity=0.150 Sum_probs=15.0
Q ss_pred EEEEcCCCchHHHHhHHHHHHHH
Q psy7786 10 IIGIAFTGSGKTLVFVLPILMFC 32 (252)
Q Consensus 10 ~~~~a~tgsGKT~a~~lp~~~~~ 32 (252)
+-+.+++||||| ++.-.+.+.+
T Consensus 6 IgIaG~SgSGKT-Tla~~l~~~l 27 (210)
T PTZ00301 6 IGISGASGSGKS-SLSTNIVSEL 27 (210)
T ss_pred EEEECCCcCCHH-HHHHHHHHHH
Confidence 457899999999 4444444444
No 367
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=88.24 E-value=1.2 Score=35.35 Aligned_cols=52 Identities=25% Similarity=0.273 Sum_probs=29.8
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l 69 (252)
.|.-+++.+++|+|||. |++-++..... ++-.++|++- -+-..|+.+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~-~~~~~~~~~~~----------~g~~~~y~s~-e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTT-FSLQFLYQGLK----------NGEKAMYISL-EEREERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHH-HHHHHHHHHHh----------CCCeEEEEEC-CCCHHHHHHHHHHc
Confidence 47778999999999983 33322222211 1335777653 44455555555443
No 368
>PF02500 DNA_pack_N: Probable DNA packing protein, N-terminus ; InterPro: IPR003499 This family includes proteins that are probably involved in DNA packing in Herpesviridae. This domain is normally found at the N terminus of the protein.; GO: 0006323 DNA packaging
Probab=88.19 E-value=0.64 Score=38.00 Aligned_cols=48 Identities=23% Similarity=0.229 Sum_probs=40.8
Q ss_pred cCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 14 AFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 70 (252)
Q Consensus 14 a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~ 70 (252)
=|---||| +|++|+|..++..- ++++.-|++..|-.++-|.+++..-.
T Consensus 195 VPRRHGKT-WfvVpiIsllL~s~--------~gI~IGYvAHqKhvs~~VF~EI~~~l 242 (284)
T PF02500_consen 195 VPRRHGKT-WFVVPIISLLLASF--------EGIKIGYVAHQKHVSEPVFEEIINRL 242 (284)
T ss_pred eeccCCCc-chHHHHHHHHHHHh--------cCceeeehHHHHHhhHHHHHHHHHHH
Confidence 45567999 89999999999887 48999999999999999988775443
No 369
>PRK07952 DNA replication protein DnaC; Validated
Probab=88.14 E-value=1.7 Score=35.13 Aligned_cols=44 Identities=23% Similarity=0.181 Sum_probs=26.4
Q ss_pred CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHH
Q psy7786 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 63 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~ 63 (252)
..+++.+++|+|||... ..+.+.+... +..++++ +..+|...+.
T Consensus 100 ~~~~l~G~~GtGKThLa-~aia~~l~~~----------g~~v~~i-t~~~l~~~l~ 143 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLA-AAICNELLLR----------GKSVLII-TVADIMSAMK 143 (244)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHHhc----------CCeEEEE-EHHHHHHHHH
Confidence 47899999999999433 2334444332 3446555 4555554443
No 370
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=87.87 E-value=0.64 Score=35.30 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=14.8
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLE 34 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~ 34 (252)
.+++.+++.+++|+|||. ++--++.++..
T Consensus 22 ~~~~~~ll~G~~G~GKT~-ll~~~~~~~~~ 50 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTS-LLRALLDRLAE 50 (185)
T ss_dssp -----EEE-B-TTSSHHH-HHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHH-HHHHHHHHHHh
Confidence 356789999999999993 33334444443
No 371
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=87.83 E-value=1.6 Score=39.38 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=18.2
Q ss_pred cccCCCcEEEEcCCCchHHHHh
Q psy7786 3 TYRNSRDIIGIAFTGSGKTLVF 24 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~a~ 24 (252)
.+..|+-+.+.++||+|||...
T Consensus 346 ~l~~G~vIaLVGPtGvGKTTta 367 (559)
T PRK12727 346 PLERGGVIALVGPTGAGKTTTI 367 (559)
T ss_pred cccCCCEEEEECCCCCCHHHHH
Confidence 3567888999999999999654
No 372
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=87.56 E-value=0.45 Score=39.65 Aligned_cols=12 Identities=50% Similarity=0.445 Sum_probs=11.4
Q ss_pred EEEEcCCCchHH
Q psy7786 10 IIGIAFTGSGKT 21 (252)
Q Consensus 10 ~~~~a~tgsGKT 21 (252)
+++.+||+||||
T Consensus 6 i~I~GPTAsGKT 17 (308)
T COG0324 6 IVIAGPTASGKT 17 (308)
T ss_pred EEEECCCCcCHH
Confidence 789999999999
No 373
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=87.51 E-value=0.4 Score=41.14 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=19.2
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCL 33 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~ 33 (252)
.+.-+++++|||||||... -.++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 5667999999999999543 33444443
No 374
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=87.45 E-value=0.37 Score=41.42 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=23.8
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLE 34 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~ 34 (252)
..|+.++|.+.+||||| .|.+-+++.+..
T Consensus 8 ~~G~TLLIKG~PGTGKT-tfaLelL~~l~~ 36 (484)
T PF07088_consen 8 EPGQTLLIKGEPGTGKT-TFALELLNSLKD 36 (484)
T ss_pred CCCcEEEEecCCCCCce-eeehhhHHHHhc
Confidence 46889999999999999 677777776654
No 375
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=87.38 E-value=1.9 Score=38.08 Aligned_cols=28 Identities=36% Similarity=0.230 Sum_probs=20.9
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCL 33 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~ 33 (252)
..|.=+++.|++|+||| +|.+-+..++.
T Consensus 193 ~~G~l~vi~g~pg~GKT-~~~l~~a~~~a 220 (434)
T TIGR00665 193 QPSDLIILAARPSMGKT-AFALNIAENAA 220 (434)
T ss_pred CCCeEEEEEeCCCCChH-HHHHHHHHHHH
Confidence 34556789999999999 77776665544
No 376
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=87.33 E-value=0.53 Score=42.99 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=17.4
Q ss_pred CcEEEEcCCCchHHHHhHHHHHHHH
Q psy7786 8 RDIIGIAFTGSGKTLVFVLPILMFC 32 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a~~lp~~~~~ 32 (252)
.-+++++|||||||.+. -.++..+
T Consensus 317 Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 317 GMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHhh
Confidence 35789999999999653 3455544
No 377
>KOG0745|consensus
Probab=87.15 E-value=0.37 Score=41.89 Aligned_cols=19 Identities=37% Similarity=0.469 Sum_probs=16.1
Q ss_pred ccCCCcEEEEcCCCchHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~ 22 (252)
-|+.-|+++.+|||||||+
T Consensus 223 ~LeKSNvLllGPtGsGKTl 241 (564)
T KOG0745|consen 223 ELEKSNVLLLGPTGSGKTL 241 (564)
T ss_pred eeecccEEEECCCCCchhH
Confidence 3556689999999999995
No 378
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=87.06 E-value=0.44 Score=33.57 Aligned_cols=13 Identities=46% Similarity=0.445 Sum_probs=11.5
Q ss_pred EEEEcCCCchHHH
Q psy7786 10 IIGIAFTGSGKTL 22 (252)
Q Consensus 10 ~~~~a~tgsGKT~ 22 (252)
+++.+++|||||.
T Consensus 2 I~I~G~~gsGKST 14 (121)
T PF13207_consen 2 IIISGPPGSGKST 14 (121)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 6789999999993
No 379
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=86.97 E-value=0.46 Score=33.81 Aligned_cols=13 Identities=38% Similarity=0.414 Sum_probs=11.6
Q ss_pred EEEEcCCCchHHH
Q psy7786 10 IIGIAFTGSGKTL 22 (252)
Q Consensus 10 ~~~~a~tgsGKT~ 22 (252)
+++.+|+|+|||.
T Consensus 1 ill~G~~G~GKT~ 13 (132)
T PF00004_consen 1 ILLHGPPGTGKTT 13 (132)
T ss_dssp EEEESSTTSSHHH
T ss_pred CEEECcCCCCeeH
Confidence 5889999999994
No 380
>KOG2340|consensus
Probab=86.90 E-value=2.9 Score=37.45 Aligned_cols=80 Identities=19% Similarity=0.180 Sum_probs=56.1
Q ss_pred CChHHHHhhhhhhhcCCcEEEEccCC-Cch--hHHhHHHHHHHHHhhhccC-------CC-------------CCCCCcE
Q psy7786 166 KPTPIQVQGIPAALSGRDIIGIAFTG-SGK--TLVFVLPILMFCLEQETKL-------PF-------------LPGEGPY 222 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~~~~~~~~~~~g-~gK--t~~~~~~~l~~i~~~~~~~-------~~-------------~~~~~~~ 222 (252)
..++.|...+-.+.+-+|++....+. .|+ ...|++..+.++++..... .. .....|+
T Consensus 216 pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRpk 295 (698)
T KOG2340|consen 216 PLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRPK 295 (698)
T ss_pred cchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCce
Confidence 34778888888888888988776653 344 3467788888777543210 00 1122479
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHh
Q psy7786 223 GLIICPSRELARQTHDIIQYYCA 245 (252)
Q Consensus 223 ~LIf~~tr~~a~~i~~~l~~l~~ 245 (252)
+||+||+|+-|..+.+.|..+.+
T Consensus 296 VLivvpfRe~A~riVn~lis~l~ 318 (698)
T KOG2340|consen 296 VLIVVPFRESAYRIVNLLISLLS 318 (698)
T ss_pred EEEEecchHHHHHHHHHHHHHhc
Confidence 99999999999999999887743
No 381
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=86.84 E-value=0.44 Score=34.60 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=12.5
Q ss_pred cEEEEcCCCchHHH
Q psy7786 9 DIIGIAFTGSGKTL 22 (252)
Q Consensus 9 d~~~~a~tgsGKT~ 22 (252)
++++.+|+|+|||.
T Consensus 1 ~vlL~G~~G~GKt~ 14 (139)
T PF07728_consen 1 PVLLVGPPGTGKTT 14 (139)
T ss_dssp EEEEEESSSSSHHH
T ss_pred CEEEECCCCCCHHH
Confidence 58999999999994
No 382
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=86.81 E-value=0.44 Score=37.18 Aligned_cols=15 Identities=40% Similarity=0.417 Sum_probs=12.7
Q ss_pred EEEEcCCCchHHHHh
Q psy7786 10 IIGIAFTGSGKTLVF 24 (252)
Q Consensus 10 ~~~~a~tgsGKT~a~ 24 (252)
+++.+|||+|||.+-
T Consensus 4 i~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 4 IALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCchHhHH
Confidence 678999999999654
No 383
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=86.80 E-value=0.55 Score=38.89 Aligned_cols=19 Identities=26% Similarity=0.202 Sum_probs=15.7
Q ss_pred CCCcEEEEcCCCchHHHHh
Q psy7786 6 NSRDIIGIAFTGSGKTLVF 24 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~ 24 (252)
.+.++++.+|+|||||...
T Consensus 57 ~~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CCceEEEEcCCCCCHHHHH
Confidence 4568999999999999543
No 384
>KOG1132|consensus
Probab=86.75 E-value=0.72 Score=43.40 Aligned_cols=69 Identities=13% Similarity=0.031 Sum_probs=44.6
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhh---c----CCCC--------C------------C----CCCcEEEEE
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQE---T----KLPF--------L------------P----GEGPYGLII 52 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~---~----~~~~--------~------------~----~~~~~~lil 52 (252)
+.++.|.+..+|||||||++.+...+...-... . +... + + ..-|+..|-
T Consensus 37 L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~~e~~~~~~~ipkIyya 116 (945)
T KOG1132|consen 37 LDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEAGEPIACYTGIPKIYYA 116 (945)
T ss_pred HHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhhcCccccccCCceEEEe
Confidence 345667899999999999998876664332111 0 0000 0 0 124677888
Q ss_pred cCcHHHHHHHHHHHHHHHHh
Q psy7786 53 CPSRELARQTHDIIQYYCAA 72 (252)
Q Consensus 53 ~ptreLa~q~~~~~~~l~~~ 72 (252)
+-|+....|+.+++++.+-.
T Consensus 117 SRTHsQltQvvrElrrT~Y~ 136 (945)
T KOG1132|consen 117 SRTHSQLTQVVRELRRTGYR 136 (945)
T ss_pred cchHHHHHHHHHHHhhcCCC
Confidence 88998888888888776533
No 385
>PRK10436 hypothetical protein; Provisional
Probab=86.61 E-value=0.42 Score=42.41 Aligned_cols=25 Identities=32% Similarity=0.283 Sum_probs=17.7
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFC 32 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~ 32 (252)
+.-+++++|||||||.+. -.++..+
T Consensus 218 ~GliLvtGpTGSGKTTtL-~a~l~~~ 242 (462)
T PRK10436 218 QGLILVTGPTGSGKTVTL-YSALQTL 242 (462)
T ss_pred CCeEEEECCCCCChHHHH-HHHHHhh
Confidence 345899999999999653 2345544
No 386
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=86.55 E-value=1.2 Score=35.01 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=16.8
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPIL 29 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~ 29 (252)
.|.=+.+.+++||||| +|++-+.
T Consensus 18 ~g~i~~i~G~~GsGKT-~l~~~~a 40 (218)
T cd01394 18 RGTVTQVYGPPGTGKT-NIAIQLA 40 (218)
T ss_pred CCeEEEEECCCCCCHH-HHHHHHH
Confidence 4566889999999999 4444433
No 387
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=86.53 E-value=2.1 Score=37.09 Aligned_cols=21 Identities=48% Similarity=0.453 Sum_probs=17.0
Q ss_pred cCCCcEEEEcCCCchHHHHhH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFV 25 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~ 25 (252)
..|+-+++.+|+|+|||....
T Consensus 204 ~~~~ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLV 224 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHH
Confidence 457788999999999995543
No 388
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=86.47 E-value=2.2 Score=37.41 Aligned_cols=28 Identities=25% Similarity=0.080 Sum_probs=21.1
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFC 32 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~ 32 (252)
+..|.=+++.|++|+||| +|++-+...+
T Consensus 191 ~~~g~liviag~pg~GKT-~~al~ia~~~ 218 (421)
T TIGR03600 191 LVKGDLIVIGARPSMGKT-TLALNIAENV 218 (421)
T ss_pred CCCCceEEEEeCCCCCHH-HHHHHHHHHH
Confidence 345666889999999999 7777666544
No 389
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=86.32 E-value=2.4 Score=40.08 Aligned_cols=74 Identities=16% Similarity=0.078 Sum_probs=53.6
Q ss_pred hHHHHhhhhhhhc---CC-cEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 168 TPIQVQGIPAALS---GR-DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243 (252)
Q Consensus 168 ~~iQ~~~~p~~~~---~~-~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l 243 (252)
.+.|...+..... .. .+++.++||.|||.+.+.+......... ....+.+...|+|...+++++.++..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~-------~~~~r~i~vlP~~t~ie~~~~r~~~~ 269 (733)
T COG1203 197 YELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKI-------KLKSRVIYVLPFRTIIEDMYRRAKEI 269 (733)
T ss_pred hHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccc-------cccceEEEEccHHHHHHHHHHHHHhh
Confidence 4555555533332 23 7889999999999999988887554420 13578899999999999999999876
Q ss_pred HhhCC
Q psy7786 244 CAALP 248 (252)
Q Consensus 244 ~~~~~ 248 (252)
....+
T Consensus 270 ~~~~~ 274 (733)
T COG1203 270 FGLFS 274 (733)
T ss_pred hcccc
Confidence 65544
No 390
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=86.23 E-value=0.44 Score=37.34 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=14.2
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|+++++.++.|||||+.
T Consensus 19 AaG~h~lLl~GppGtGKTml 38 (206)
T PF01078_consen 19 AAGGHHLLLIGPPGTGKTML 38 (206)
T ss_dssp HHCC--EEEES-CCCTHHHH
T ss_pred HcCCCCeEEECCCCCCHHHH
Confidence 34688999999999999953
No 391
>KOG0060|consensus
Probab=86.16 E-value=0.54 Score=42.34 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=18.1
Q ss_pred ccCCCcEEEEcCCCchHHHHh
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVF 24 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~ 24 (252)
+-+|++++|++|+|+|||--+
T Consensus 458 V~~g~~LLItG~sG~GKtSLl 478 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTSLL 478 (659)
T ss_pred ecCCCeEEEECCCCCchhHHH
Confidence 568999999999999999543
No 392
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=86.14 E-value=0.22 Score=40.28 Aligned_cols=85 Identities=13% Similarity=0.166 Sum_probs=58.7
Q ss_pred CCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee-eeeCCcccCcchhhhhhc-ccccCCccccccCCccccCCCh
Q psy7786 43 PGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC-LAIGGVPMNQSLDVIKKG-IQYNDPIKTSWRAPRCILSLPD 120 (252)
Q Consensus 43 ~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~-~~~g~~~~~~~~~~l~~~-~~i~~~i~t~~~~p~~l~~~~~ 120 (252)
..+.|.+|||+..---|.++...++.|... + ..++ .+.--...++|...++++ ++|. + +||+|+..+.+
T Consensus 123 ~~gsP~~lvvs~SalRa~dl~R~l~~~~~k-~--~~v~KLFaKH~Kl~eqv~~L~~~~~~i~--v----GTP~Rl~kLle 193 (252)
T PF14617_consen 123 EKGSPHVLVVSSSALRAADLIRALRSFKGK-D--CKVAKLFAKHIKLEEQVKLLKKTRVHIA--V----GTPGRLSKLLE 193 (252)
T ss_pred CCCCCEEEEEcchHHHHHHHHHHHHhhccC-C--chHHHHHHhhccHHHHHHHHHhCCceEE--E----eChHHHHHHHH
Confidence 346799999999988888888888776311 1 1222 222234567888888864 4442 3 55999999998
Q ss_pred hHHHHHhhhhceeeccC
Q psy7786 121 QVHDIIRRNLRILVEGD 137 (252)
Q Consensus 121 ~~~~~l~~~~~~~V~de 137 (252)
.....+.+ +.++|.|.
T Consensus 194 ~~~L~l~~-l~~ivlD~ 209 (252)
T PF14617_consen 194 NGALSLSN-LKRIVLDW 209 (252)
T ss_pred cCCCCccc-CeEEEEcC
Confidence 87777766 78888776
No 393
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=86.12 E-value=2.4 Score=41.13 Aligned_cols=41 Identities=20% Similarity=0.314 Sum_probs=28.1
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHH
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRE 57 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptre 57 (252)
..|.+|.++||||||..... ++..++.. .+++++|+=|-++
T Consensus 475 n~n~~I~G~TGSGKS~l~~~-li~q~~~~---------~~~~v~IiD~g~s 515 (893)
T TIGR03744 475 NAHLLILGPTGAGKSATLTN-LLMQVMAV---------HRPRLFIVEAGNS 515 (893)
T ss_pred cccEEEECCCCCCHHHHHHH-HHHHHHHh---------cCCEEEEEcCCCC
Confidence 56899999999999955433 33333321 1567888888876
No 394
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=86.07 E-value=0.44 Score=41.59 Aligned_cols=24 Identities=17% Similarity=0.384 Sum_probs=20.3
Q ss_pred CcccCCCcEEEEcCCCchHHHHhH
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFV 25 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~ 25 (252)
|.+.++.|++..+|+|+|||..|.
T Consensus 204 ~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 204 PLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHhcCCcEEEECCCCCCHHHHHH
Confidence 556788999999999999996554
No 395
>KOG0389|consensus
Probab=85.81 E-value=3.4 Score=38.75 Aligned_cols=113 Identities=19% Similarity=0.308 Sum_probs=66.8
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCc
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGV 86 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~ 86 (252)
+-+-|++-.-|-|||.- ++.-+..+..... .|| -|||+|..-| .++++.|.+..+ .+++...+|..
T Consensus 418 ~l~gILADEMGLGKTiQ-vIaFlayLkq~g~-------~gp-HLVVvPsSTl----eNWlrEf~kwCP-sl~Ve~YyGSq 483 (941)
T KOG0389|consen 418 KLNGILADEMGLGKTIQ-VIAFLAYLKQIGN-------PGP-HLVVVPSSTL----ENWLREFAKWCP-SLKVEPYYGSQ 483 (941)
T ss_pred cccceehhhccCcchhH-HHHHHHHHHHcCC-------CCC-cEEEecchhH----HHHHHHHHHhCC-ceEEEeccCcH
Confidence 44558888999999942 2222333333322 345 4888897764 577888888887 59999999886
Q ss_pred ccCcchhhh-hhc-ccccCCccccccCCccccCCChhHHHHHh-hhhceeeccCC
Q psy7786 87 PMNQSLDVI-KKG-IQYNDPIKTSWRAPRCILSLPDQVHDIIR-RNLRILVEGDD 138 (252)
Q Consensus 87 ~~~~~~~~l-~~~-~~i~~~i~t~~~~p~~l~~~~~~~~~~l~-~~~~~~V~de~ 138 (252)
....+++.. .++ .+++ ++.|-| .+......+...|+ ..+.++|-||.
T Consensus 484 ~ER~~lR~~i~~~~~~yd-VllTTY----~la~~~kdDRsflk~~~~n~viyDEg 533 (941)
T KOG0389|consen 484 DERRELRERIKKNKDDYD-VLLTTY----NLAASSKDDRSFLKNQKFNYVIYDEG 533 (941)
T ss_pred HHHHHHHHHHhccCCCcc-EEEEEe----ecccCChHHHHHHHhccccEEEecch
Confidence 544433332 222 3432 244422 24444444444444 45778998885
No 396
>KOG1533|consensus
Probab=85.75 E-value=0.96 Score=36.15 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=20.7
Q ss_pred EEEEcCCCchHHHHhHHHHHHHHHHhh
Q psy7786 10 IIGIAFTGSGKTLVFVLPILMFCLEQE 36 (252)
Q Consensus 10 ~~~~a~tgsGKT~a~~lp~~~~~~~~~ 36 (252)
-++++|+||||| +|+..+.+.+....
T Consensus 5 qvVIGPPgSGKs-TYc~g~~~fls~~g 30 (290)
T KOG1533|consen 5 QVVIGPPGSGKS-TYCNGMSQFLSAIG 30 (290)
T ss_pred eEEEcCCCCCcc-chhhhHHHHHHHhC
Confidence 368999999999 89988877765543
No 397
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=85.58 E-value=0.59 Score=37.22 Aligned_cols=58 Identities=28% Similarity=0.228 Sum_probs=32.4
Q ss_pred HHHhhhh-hhhcCCcEEEEcc-CCC--chhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHH
Q psy7786 170 IQVQGIP-AALSGRDIIGIAF-TGS--GKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT 236 (252)
Q Consensus 170 iQ~~~~p-~~~~~~~~~~~~~-~g~--gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i 236 (252)
-|+.++- ++.....+++... ||. .++...++.++..+.++. +.-+++.++..++|...
T Consensus 148 qQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~---------g~tii~VTHd~~lA~~~ 209 (226)
T COG1136 148 QQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKER---------GKTIIMVTHDPELAKYA 209 (226)
T ss_pred HHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhc---------CCEEEEEcCCHHHHHhC
Confidence 4555553 3444555555543 442 355556666666554432 33477778888887653
No 398
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=85.36 E-value=0.56 Score=39.13 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=13.4
Q ss_pred CCCcEEEEcCCCchHH
Q psy7786 6 NSRDIIGIAFTGSGKT 21 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT 21 (252)
.++=+++.+|||||||
T Consensus 3 ~~~ii~I~GpTasGKS 18 (300)
T PRK14729 3 ENKIVFIFGPTAVGKS 18 (300)
T ss_pred CCcEEEEECCCccCHH
Confidence 3445899999999999
No 399
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=85.36 E-value=0.61 Score=36.80 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=15.6
Q ss_pred ccCCCcEEEEcCCCchHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~ 22 (252)
+..|.=+++++|+|||||.
T Consensus 25 v~~Gevv~iiGpSGSGKST 43 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKST 43 (240)
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 3466778999999999993
No 400
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=85.32 E-value=1.6 Score=34.08 Aligned_cols=17 Identities=29% Similarity=0.079 Sum_probs=14.3
Q ss_pred CCCcEEEEcCCCchHHH
Q psy7786 6 NSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~ 22 (252)
.|.=+.+.+++|||||.
T Consensus 11 ~g~i~~i~G~~GsGKT~ 27 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTN 27 (209)
T ss_pred CCeEEEEECCCCCCHHH
Confidence 45668899999999994
No 401
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=85.28 E-value=0.75 Score=36.58 Aligned_cols=14 Identities=29% Similarity=0.290 Sum_probs=12.7
Q ss_pred cEEEEcCCCchHHH
Q psy7786 9 DIIGIAFTGSGKTL 22 (252)
Q Consensus 9 d~~~~a~tgsGKT~ 22 (252)
+++..+|+|+|||.
T Consensus 52 h~lf~GPPG~GKTT 65 (233)
T PF05496_consen 52 HMLFYGPPGLGKTT 65 (233)
T ss_dssp EEEEESSTTSSHHH
T ss_pred eEEEECCCccchhH
Confidence 68999999999993
No 402
>PRK04296 thymidine kinase; Provisional
Probab=85.18 E-value=2.2 Score=33.01 Aligned_cols=35 Identities=23% Similarity=0.083 Sum_probs=22.0
Q ss_pred cEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcC
Q psy7786 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICP 54 (252)
Q Consensus 9 d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~p 54 (252)
=.++.++.|+|||.+ ++-.+.++.. .+-+++++-|
T Consensus 4 i~litG~~GsGKTT~-~l~~~~~~~~----------~g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTE-LLQRAYNYEE----------RGMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHH-HHHHHHHHHH----------cCCeEEEEec
Confidence 357889999999943 3444444432 2446777755
No 403
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=85.18 E-value=1.2 Score=41.47 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=33.3
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHH
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT 62 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~ 62 (252)
||.-.+.+++++.+-||||||.++ --++..+.. ++=+++|.=|+-+....-
T Consensus 179 ip~~~E~~H~li~GttGSGKS~~i-~~LL~~ir~----------RGdrAIIyD~~GeFv~~F 229 (732)
T PRK13700 179 IIRDSEIQNFCLHGTVGAGKSEVI-RRLANYARQ----------RGDMVVIYDRSGEFVKSY 229 (732)
T ss_pred CCcchhhcceEEeCCCCCCHHHHH-HHHHHHHHH----------cCCeEEEEeCCCchHHHh
Confidence 355567889999999999999743 334433332 234577776776665433
No 404
>PRK05595 replicative DNA helicase; Provisional
Probab=85.17 E-value=3 Score=36.98 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=19.3
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFC 32 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~ 32 (252)
.|.=+++.|.||+||| +|.+-+..++
T Consensus 200 ~g~liviaarpg~GKT-~~al~ia~~~ 225 (444)
T PRK05595 200 KGDMILIAARPSMGKT-TFALNIAEYA 225 (444)
T ss_pred CCcEEEEEecCCCChH-HHHHHHHHHH
Confidence 3445678999999999 7777666554
No 405
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=85.13 E-value=3.1 Score=32.97 Aligned_cols=46 Identities=22% Similarity=0.230 Sum_probs=26.8
Q ss_pred cEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHH
Q psy7786 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHD 64 (252)
Q Consensus 9 d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~ 64 (252)
-+++.+++|+|||- .+-.+.+.+.... .+.+++|+.. .+....+.+
T Consensus 36 ~l~l~G~~G~GKTH-LL~Ai~~~~~~~~--------~~~~v~y~~~-~~f~~~~~~ 81 (219)
T PF00308_consen 36 PLFLYGPSGLGKTH-LLQAIANEAQKQH--------PGKRVVYLSA-EEFIREFAD 81 (219)
T ss_dssp EEEEEESTTSSHHH-HHHHHHHHHHHHC--------TTS-EEEEEH-HHHHHHHHH
T ss_pred ceEEECCCCCCHHH-HHHHHHHHHHhcc--------ccccceeecH-HHHHHHHHH
Confidence 37999999999996 3334444444332 2556777753 345444433
No 406
>PHA00729 NTP-binding motif containing protein
Probab=85.11 E-value=0.7 Score=36.81 Aligned_cols=18 Identities=28% Similarity=0.368 Sum_probs=14.5
Q ss_pred cEEEEcCCCchHH-HHhHH
Q psy7786 9 DIIGIAFTGSGKT-LVFVL 26 (252)
Q Consensus 9 d~~~~a~tgsGKT-~a~~l 26 (252)
++++.+++|+||| +|..+
T Consensus 19 nIlItG~pGvGKT~LA~aL 37 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKV 37 (226)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7999999999999 34433
No 407
>KOG0385|consensus
Probab=84.99 E-value=5.4 Score=37.46 Aligned_cols=70 Identities=26% Similarity=0.325 Sum_probs=47.9
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeee
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAI 83 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~ 83 (252)
..+|-+.|..-+-|-|||+-- +..+-++..-.. -.|| -||++|..-|. ++...+.+.++ .+++.+.+
T Consensus 183 ~engingILaDEMGLGKTlQt-Is~l~yl~~~~~------~~GP-fLVi~P~StL~----NW~~Ef~rf~P-~l~~~~~~ 249 (971)
T KOG0385|consen 183 YENGINGILADEMGLGKTLQT-ISLLGYLKGRKG------IPGP-FLVIAPKSTLD----NWMNEFKRFTP-SLNVVVYH 249 (971)
T ss_pred HhcCcccEeehhcccchHHHH-HHHHHHHHHhcC------CCCC-eEEEeeHhhHH----HHHHHHHHhCC-CcceEEEe
Confidence 356788999999999999632 233333322111 1345 69999998876 56677777777 58999999
Q ss_pred CCc
Q psy7786 84 GGV 86 (252)
Q Consensus 84 g~~ 86 (252)
|+.
T Consensus 250 Gdk 252 (971)
T KOG0385|consen 250 GDK 252 (971)
T ss_pred CCH
Confidence 984
No 408
>PRK07004 replicative DNA helicase; Provisional
Probab=84.90 E-value=2.5 Score=37.69 Aligned_cols=28 Identities=25% Similarity=0.239 Sum_probs=20.7
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCL 33 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~ 33 (252)
..|.=+++.|.+|+||| +|.+-+..++.
T Consensus 211 ~~g~liviaarpg~GKT-~~al~ia~~~a 238 (460)
T PRK07004 211 HGGELIIVAGRPSMGKT-AFSMNIGEYVA 238 (460)
T ss_pred CCCceEEEEeCCCCCcc-HHHHHHHHHHH
Confidence 34566788999999999 67776665543
No 409
>PRK05748 replicative DNA helicase; Provisional
Probab=84.87 E-value=1.8 Score=38.41 Aligned_cols=28 Identities=32% Similarity=0.239 Sum_probs=21.4
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCL 33 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~ 33 (252)
..|.=+++.|.||+||| +|.+-++..+.
T Consensus 201 ~~G~livIaarpg~GKT-~~al~ia~~~a 228 (448)
T PRK05748 201 QPNDLIIVAARPSVGKT-AFALNIAQNVA 228 (448)
T ss_pred CCCceEEEEeCCCCCch-HHHHHHHHHHH
Confidence 45566889999999999 77777765543
No 410
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=84.85 E-value=0.6 Score=33.91 Aligned_cols=13 Identities=46% Similarity=0.465 Sum_probs=11.6
Q ss_pred EEEEcCCCchHHH
Q psy7786 10 IIGIAFTGSGKTL 22 (252)
Q Consensus 10 ~~~~a~tgsGKT~ 22 (252)
+++++++|||||.
T Consensus 2 ii~~G~pgsGKSt 14 (143)
T PF13671_consen 2 IILCGPPGSGKST 14 (143)
T ss_dssp EEEEESTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 6889999999994
No 411
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=84.73 E-value=1.6 Score=33.37 Aligned_cols=17 Identities=35% Similarity=0.538 Sum_probs=14.9
Q ss_pred CCCcEEEEcCCCchHHH
Q psy7786 6 NSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~ 22 (252)
++|-+++.+|+||||+.
T Consensus 1 ~~r~ivl~Gpsg~GK~~ 17 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKST 17 (183)
T ss_dssp SSSEEEEESSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46789999999999993
No 412
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=84.55 E-value=0.37 Score=34.48 Aligned_cols=41 Identities=24% Similarity=0.205 Sum_probs=24.2
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELAR 60 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~ 60 (252)
.|.=++..++-|+||| +|+=.++..+ +...-+-+||-.|++
T Consensus 14 ~g~vi~L~GdLGaGKT-tf~r~l~~~l-------------g~~~~V~SPTF~l~~ 54 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKT-TFVRGLARAL-------------GIDEEVTSPTFSLVN 54 (123)
T ss_dssp S-EEEEEEESTTSSHH-HHHHHHHHHT-------------T--S----TTTTSEE
T ss_pred CCCEEEEECCCCCCHH-HHHHHHHHHc-------------CCCCCcCCCCeEEEE
Confidence 3444678899999999 6666655544 233477889888763
No 413
>PRK08939 primosomal protein DnaI; Reviewed
Probab=84.55 E-value=2.8 Score=35.18 Aligned_cols=18 Identities=17% Similarity=0.226 Sum_probs=15.3
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
.++.+++.+++|+|||..
T Consensus 155 ~~~gl~L~G~~G~GKThL 172 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYL 172 (306)
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 467899999999999943
No 414
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=84.53 E-value=2.3 Score=31.14 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=17.8
Q ss_pred EEEEcCCCchHHHHhHHHHHHHHHH
Q psy7786 10 IIGIAFTGSGKTLVFVLPILMFCLE 34 (252)
Q Consensus 10 ~~~~a~tgsGKT~a~~lp~~~~~~~ 34 (252)
+.++++.+|||| +++--+++.+..
T Consensus 3 v~VvG~~~sGKT-Tl~~~Li~~l~~ 26 (140)
T PF03205_consen 3 VQVVGPKNSGKT-TLIRKLINELKR 26 (140)
T ss_dssp EEEEESTTSSHH-HHHHHHHHHHHH
T ss_pred EEEECCCCCCHH-HHHHHHHHHHhH
Confidence 578999999999 555556666554
No 415
>PRK11823 DNA repair protein RadA; Provisional
Probab=84.45 E-value=2.1 Score=37.95 Aligned_cols=53 Identities=17% Similarity=0.080 Sum_probs=32.2
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 70 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~ 70 (252)
.|.=+++.+++|+||| ++++-+...+.. .+-+++|++ +-|-..|+....+.++
T Consensus 79 ~Gs~~lI~G~pG~GKT-tL~lq~a~~~a~----------~g~~vlYvs-~Ees~~qi~~ra~rlg 131 (446)
T PRK11823 79 PGSVVLIGGDPGIGKS-TLLLQVAARLAA----------AGGKVLYVS-GEESASQIKLRAERLG 131 (446)
T ss_pred CCEEEEEECCCCCCHH-HHHHHHHHHHHh----------cCCeEEEEE-ccccHHHHHHHHHHcC
Confidence 4667889999999999 343333333321 134577776 4455566666555543
No 416
>PRK08506 replicative DNA helicase; Provisional
Probab=84.44 E-value=3 Score=37.30 Aligned_cols=28 Identities=29% Similarity=0.250 Sum_probs=21.2
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCL 33 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~ 33 (252)
..|.=+++.|.||.||| +|.+-+...+.
T Consensus 190 ~~G~LivIaarpg~GKT-~fal~ia~~~~ 217 (472)
T PRK08506 190 NKGDLIIIAARPSMGKT-TLCLNMALKAL 217 (472)
T ss_pred CCCceEEEEcCCCCChH-HHHHHHHHHHH
Confidence 34556788999999999 77777766554
No 417
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=84.29 E-value=2.5 Score=31.59 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=14.2
Q ss_pred EEEEcCCCchHHHHhHHHHHHHH
Q psy7786 10 IIGIAFTGSGKTLVFVLPILMFC 32 (252)
Q Consensus 10 ~~~~a~tgsGKT~a~~lp~~~~~ 32 (252)
+.+.+++|||||. ++--++..+
T Consensus 2 i~i~G~~gsGKTt-l~~~l~~~l 23 (155)
T TIGR00176 2 LQIVGPKNSGKTT-LIERLVKAL 23 (155)
T ss_pred EEEECCCCCCHHH-HHHHHHHHH
Confidence 4678999999993 333333333
No 418
>PF05729 NACHT: NACHT domain
Probab=84.14 E-value=1.3 Score=32.83 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=16.5
Q ss_pred EEEEcCCCchHHHHhHHHHHHHHHH
Q psy7786 10 IIGIAFTGSGKTLVFVLPILMFCLE 34 (252)
Q Consensus 10 ~~~~a~tgsGKT~a~~lp~~~~~~~ 34 (252)
+++.++.|+|||. ++--+...+..
T Consensus 3 l~I~G~~G~GKSt-ll~~~~~~~~~ 26 (166)
T PF05729_consen 3 LWISGEPGSGKST-LLRKLAQQLAE 26 (166)
T ss_pred EEEECCCCCChHH-HHHHHHHHHHh
Confidence 6899999999994 33444444433
No 419
>COG4889 Predicted helicase [General function prediction only]
Probab=84.12 E-value=2.4 Score=40.44 Aligned_cols=61 Identities=23% Similarity=0.208 Sum_probs=41.0
Q ss_pred CchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCcccCcchh
Q psy7786 17 GSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLD 93 (252)
Q Consensus 17 gsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~ 93 (252)
|+|||.+-+ -+.+.+. ..+.|+++|+..|..|..+.+ ......+++...++.+.......+
T Consensus 190 GTGKTfTsL-kisEala------------~~~iL~LvPSIsLLsQTlrew---~~~~~l~~~a~aVcSD~kvsrs~e 250 (1518)
T COG4889 190 GTGKTFTSL-KISEALA------------AARILFLVPSISLLSQTLREW---TAQKELDFRASAVCSDDKVSRSAE 250 (1518)
T ss_pred CCCccchHH-HHHHHHh------------hhheEeecchHHHHHHHHHHH---hhccCccceeEEEecCcccccccc
Confidence 899997643 3333332 346999999999999976544 444444588888887765544433
No 420
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=84.09 E-value=0.74 Score=32.55 Aligned_cols=13 Identities=46% Similarity=0.376 Sum_probs=11.5
Q ss_pred EEEEcCCCchHHH
Q psy7786 10 IIGIAFTGSGKTL 22 (252)
Q Consensus 10 ~~~~a~tgsGKT~ 22 (252)
|++.+.+|||||.
T Consensus 1 I~i~G~~GsGKtT 13 (129)
T PF13238_consen 1 IGISGIPGSGKTT 13 (129)
T ss_dssp EEEEESTTSSHHH
T ss_pred CEEECCCCCCHHH
Confidence 5789999999994
No 421
>PLN02165 adenylate isopentenyltransferase
Probab=84.06 E-value=0.89 Score=38.42 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=15.2
Q ss_pred CCCcEEEEcCCCchHHHHh
Q psy7786 6 NSRDIIGIAFTGSGKTLVF 24 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~ 24 (252)
.|+-+++.+|||||||...
T Consensus 42 ~g~iivIiGPTGSGKStLA 60 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLS 60 (334)
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 4566899999999999443
No 422
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=84.01 E-value=0.95 Score=31.53 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=16.5
Q ss_pred cCCCcEEEEcCCCchHHHHhH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFV 25 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~ 25 (252)
..|+-+.+.+|+|||||....
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~ 33 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELAL 33 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHH
Confidence 456678999999999996443
No 423
>KOG1802|consensus
Probab=83.99 E-value=3.5 Score=38.02 Aligned_cols=76 Identities=18% Similarity=0.133 Sum_probs=56.1
Q ss_pred HHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHH
Q psy7786 159 LEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHD 238 (252)
Q Consensus 159 l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~ 238 (252)
+...++.....-|..+....+...=-+++.++|+|||.... .++.++.++ ....+||.+|+.--++++++
T Consensus 403 ~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa-~IVyhl~~~---------~~~~VLvcApSNiAVDqLae 472 (935)
T KOG1802|consen 403 FSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ---------HAGPVLVCAPSNIAVDQLAE 472 (935)
T ss_pred hcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhH-HHHHHHHHh---------cCCceEEEcccchhHHHHHH
Confidence 34445555667889999999988889999999999987532 222333332 24579999999999999999
Q ss_pred HHHHHH
Q psy7786 239 IIQYYC 244 (252)
Q Consensus 239 ~l~~l~ 244 (252)
.+.+.+
T Consensus 473 KIh~tg 478 (935)
T KOG1802|consen 473 KIHKTG 478 (935)
T ss_pred HHHhcC
Confidence 987654
No 424
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=83.95 E-value=2.2 Score=36.75 Aligned_cols=47 Identities=17% Similarity=0.272 Sum_probs=33.6
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT 62 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~ 62 (252)
.+|..+.+.++-|||||. ++=.+...... .+..+++++||---|..+
T Consensus 20 ~~~~~~fv~G~~GtGKs~--l~~~i~~~~~~---------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSF--LIKAIIDYLRS---------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred cCCcEEEEEcCCCCChhH--HHHHHHHHhcc---------ccceEEEecchHHHHHhc
Confidence 578899999999999994 44333333322 245689999999877666
No 425
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=83.95 E-value=0.68 Score=40.74 Aligned_cols=20 Identities=20% Similarity=0.449 Sum_probs=17.6
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
...|+++++.+|.|||||+.
T Consensus 195 AAGgHnLl~~GpPGtGKTml 214 (490)
T COG0606 195 AAGGHNLLLVGPPGTGKTML 214 (490)
T ss_pred HhcCCcEEEecCCCCchHHh
Confidence 45689999999999999964
No 426
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=83.92 E-value=2 Score=33.97 Aligned_cols=18 Identities=28% Similarity=0.082 Sum_probs=14.9
Q ss_pred cCCCcEEEEcCCCchHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~ 22 (252)
..|.=+.+.+++|||||.
T Consensus 21 ~~g~i~~i~G~~GsGKT~ 38 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTN 38 (225)
T ss_pred CCCeEEEEECCCCCCHHH
Confidence 346678999999999993
No 427
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=83.75 E-value=0.9 Score=33.71 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=15.5
Q ss_pred cCCCcEEEEcCCCchHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~ 22 (252)
..|+-+++.+++|+|||.
T Consensus 12 ~~g~gvLi~G~sG~GKSt 29 (149)
T cd01918 12 VGGIGVLITGPSGIGKSE 29 (149)
T ss_pred ECCEEEEEEcCCCCCHHH
Confidence 357889999999999993
No 428
>PRK11054 helD DNA helicase IV; Provisional
Probab=83.69 E-value=5.8 Score=37.26 Aligned_cols=70 Identities=20% Similarity=0.188 Sum_probs=47.7
Q ss_pred CChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 166 KPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
..++-|..++- .....+++.+..|+|||...+--....+.... ....++|+++-||..|..+.+.+.+..
T Consensus 196 ~L~~~Q~~av~--~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~-------~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 196 PLNPSQARAVV--NGEDSLLVLAGAGSGKTSVLVARAGWLLARGQ-------AQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCHHHHHHHh--CCCCCeEEEEeCCCCHHHHHHHHHHHHHHhCC-------CCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 45667766553 23356789999999999876554443332211 123479999999999999998887544
No 429
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=83.66 E-value=3.9 Score=31.04 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=26.6
Q ss_pred EEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 10 IIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 68 (252)
Q Consensus 10 ~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~ 68 (252)
+++.+++||||| +|..-... . .+.+++|++-.+.+-....+.+.+
T Consensus 2 ~li~G~~~sGKS-~~a~~~~~---~----------~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKS-RFAERLAA---E----------LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHH-HHHHHHHH---h----------cCCCeEEEEccCcCCHHHHHHHHH
Confidence 578999999999 44332221 1 133578886666554444444443
No 430
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=83.63 E-value=0.96 Score=36.90 Aligned_cols=18 Identities=33% Similarity=0.318 Sum_probs=14.8
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
...++++.+|+|||||..
T Consensus 41 ~~~~vll~GppGtGKTtl 58 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTV 58 (261)
T ss_pred CcceEEEEcCCCCCHHHH
Confidence 345799999999999943
No 431
>KOG0924|consensus
Probab=83.46 E-value=2.9 Score=38.66 Aligned_cols=58 Identities=21% Similarity=0.196 Sum_probs=34.8
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCC
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALP 74 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~ 74 (252)
+.++.=+++.++||||||.- +-|+++.+.+.. +| -.-+--|-|.-|.-+.+.+ ++.++
T Consensus 368 ir~n~vvvivgETGSGKTTQ----l~QyL~edGY~~-----~G-mIGcTQPRRvAAiSVAkrV---a~EM~ 425 (1042)
T KOG0924|consen 368 IRENQVVVIVGETGSGKTTQ----LAQYLYEDGYAD-----NG-MIGCTQPRRVAAISVAKRV---AEEMG 425 (1042)
T ss_pred HhhCcEEEEEecCCCCchhh----hHHHHHhccccc-----CC-eeeecCchHHHHHHHHHHH---HHHhC
Confidence 44566689999999999954 345566665420 11 1222338888777665444 44554
No 432
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=83.44 E-value=2.7 Score=37.74 Aligned_cols=53 Identities=21% Similarity=0.175 Sum_probs=32.8
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l 69 (252)
-.|.-+++.+++|+|||. +.+=.+..... ++-+++|++ .-|=..|+...++.+
T Consensus 261 ~~gs~~li~G~~G~GKt~-l~~~f~~~~~~----------~ge~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 261 FKDSIILATGATGTGKTL-LVSKFLENACA----------NKERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred cCCcEEEEECCCCCCHHH-HHHHHHHHHHH----------CCCeEEEEE-eeCCHHHHHHHHHHc
Confidence 356678999999999994 32222222212 244688876 556666666665544
No 433
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=83.44 E-value=5.2 Score=35.21 Aligned_cols=15 Identities=40% Similarity=0.530 Sum_probs=12.6
Q ss_pred cEEEEcCCCchHHHH
Q psy7786 9 DIIGIAFTGSGKTLV 23 (252)
Q Consensus 9 d~~~~a~tgsGKT~a 23 (252)
=+++++++|+|||.+
T Consensus 102 vi~lvG~~GvGKTTt 116 (429)
T TIGR01425 102 VIMFVGLQGSGKTTT 116 (429)
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999844
No 434
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=83.41 E-value=2.5 Score=33.73 Aligned_cols=16 Identities=25% Similarity=0.164 Sum_probs=14.1
Q ss_pred CCCcEEEEcCCCchHH
Q psy7786 6 NSRDIIGIAFTGSGKT 21 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT 21 (252)
.|.-+++.+++|||||
T Consensus 24 ~g~~~~i~G~~GsGKt 39 (234)
T PRK06067 24 FPSLILIEGDHGTGKS 39 (234)
T ss_pred CCcEEEEECCCCCChH
Confidence 4667899999999999
No 435
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=83.34 E-value=3.5 Score=34.77 Aligned_cols=40 Identities=23% Similarity=0.142 Sum_probs=26.1
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSR 56 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptr 56 (252)
.|+=+.+.+|+||||| ++++.++...... +-.++++..-.
T Consensus 54 ~G~iteI~G~~GsGKT-tLaL~~~~~~~~~----------g~~v~yId~E~ 93 (321)
T TIGR02012 54 RGRIIEIYGPESSGKT-TLALHAIAEAQKA----------GGTAAFIDAEH 93 (321)
T ss_pred CCeEEEEECCCCCCHH-HHHHHHHHHHHHc----------CCcEEEEcccc
Confidence 5677889999999999 5555555444321 34577775443
No 436
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=83.19 E-value=5.3 Score=35.78 Aligned_cols=20 Identities=25% Similarity=0.149 Sum_probs=16.4
Q ss_pred CCCcEEEEcCCCchHHHHhH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFV 25 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~ 25 (252)
.|+=+.+.+|||+|||.+..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTA 274 (484)
T ss_pred CCcEEEEECCCCccHHHHHH
Confidence 46678899999999997654
No 437
>PRK05642 DNA replication initiation factor; Validated
Probab=83.08 E-value=4 Score=32.70 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=28.4
Q ss_pred CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l 69 (252)
..+++.+++|+|||.- +-.+.+.+.. .+.+++|+. ..++.....+..+.+
T Consensus 46 ~~l~l~G~~G~GKTHL-l~a~~~~~~~----------~~~~v~y~~-~~~~~~~~~~~~~~~ 95 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL-LQAACLRFEQ----------RGEPAVYLP-LAELLDRGPELLDNL 95 (234)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHh----------CCCcEEEee-HHHHHhhhHHHHHhh
Confidence 4588999999999943 2222333322 134577765 466765543333333
No 438
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=83.03 E-value=2.8 Score=41.86 Aligned_cols=60 Identities=30% Similarity=0.350 Sum_probs=36.7
Q ss_pred hhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEc--C----cHHHHHHHHHHHHH-HHhhCC
Q psy7786 177 AALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIIC--P----SRELARQTHDIIQY-YCAALP 248 (252)
Q Consensus 177 ~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~--~----tr~~a~~i~~~l~~-l~~~~~ 248 (252)
....++.+++++.||+|||.. +|.+..-.. .+....|.| | ++++|.++++++.. +++.+|
T Consensus 85 ai~~~~VviI~GeTGSGKTTq--lPq~lle~g----------~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VG 151 (1294)
T PRK11131 85 AIRDHQVVIVAGETGSGKTTQ--LPKICLELG----------RGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVG 151 (1294)
T ss_pred HHHhCCeEEEECCCCCCHHHH--HHHHHHHcC----------CCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceec
Confidence 333455677778999999994 664422111 122223333 3 67999999998874 666555
No 439
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=83.01 E-value=0.83 Score=34.76 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=12.6
Q ss_pred cEEEEcCCCchHHH
Q psy7786 9 DIIGIAFTGSGKTL 22 (252)
Q Consensus 9 d~~~~a~tgsGKT~ 22 (252)
+++..+|||+|||.
T Consensus 5 ~~ll~GpsGvGKT~ 18 (171)
T PF07724_consen 5 NFLLAGPSGVGKTE 18 (171)
T ss_dssp EEEEESSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 67899999999994
No 440
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=82.80 E-value=1.5 Score=35.38 Aligned_cols=22 Identities=32% Similarity=0.314 Sum_probs=16.8
Q ss_pred EEcCCCchHHHHhHHHHHHHHHH
Q psy7786 12 GIAFTGSGKTLVFVLPILMFCLE 34 (252)
Q Consensus 12 ~~a~tgsGKT~a~~lp~~~~~~~ 34 (252)
|.+|.||||| +|+-.+-+.+..
T Consensus 1 ViGpaGSGKT-T~~~~~~~~~~~ 22 (238)
T PF03029_consen 1 VIGPAGSGKT-TFCKGLSEWLES 22 (238)
T ss_dssp -EESTTSSHH-HHHHHHHHHHTT
T ss_pred CCCCCCCCHH-HHHHHHHHHHHh
Confidence 4689999999 888777776644
No 441
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=82.74 E-value=0.97 Score=34.76 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCchHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a 23 (252)
|.-+++.+|+|||||..
T Consensus 2 g~~i~l~G~sGsGKsTl 18 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSL 18 (186)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 66789999999999943
No 442
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=82.72 E-value=0.96 Score=35.76 Aligned_cols=17 Identities=29% Similarity=0.262 Sum_probs=14.8
Q ss_pred CCCcEEEEcCCCchHHH
Q psy7786 6 NSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~ 22 (252)
.++.+++.+++|||||.
T Consensus 37 ~~~~lll~G~~G~GKT~ 53 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSH 53 (226)
T ss_pred CCCeEEEECCCCCCHHH
Confidence 45689999999999994
No 443
>CHL00181 cbbX CbbX; Provisional
Probab=82.44 E-value=1.1 Score=37.10 Aligned_cols=18 Identities=28% Similarity=0.241 Sum_probs=15.3
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
.|.++++.+|+|||||..
T Consensus 58 ~~~~ill~G~pGtGKT~l 75 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTV 75 (287)
T ss_pred CCceEEEECCCCCCHHHH
Confidence 466799999999999954
No 444
>PHA02244 ATPase-like protein
Probab=82.43 E-value=0.9 Score=39.00 Aligned_cols=18 Identities=22% Similarity=0.174 Sum_probs=16.2
Q ss_pred ccCCCcEEEEcCCCchHH
Q psy7786 4 YRNSRDIIGIAFTGSGKT 21 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT 21 (252)
+..+.++++.+|||+|||
T Consensus 116 l~~~~PVLL~GppGtGKT 133 (383)
T PHA02244 116 VNANIPVFLKGGAGSGKN 133 (383)
T ss_pred HhcCCCEEEECCCCCCHH
Confidence 456889999999999999
No 445
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=82.41 E-value=0.83 Score=40.90 Aligned_cols=22 Identities=36% Similarity=0.324 Sum_probs=15.5
Q ss_pred EEEEcCCCchHHHHhHHHHHHHH
Q psy7786 10 IIGIAFTGSGKTLVFVLPILMFC 32 (252)
Q Consensus 10 ~~~~a~tgsGKT~a~~lp~~~~~ 32 (252)
+++++|||||||.+. -.+++.+
T Consensus 245 ilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 245 ILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred EEEEcCCCCCHHHHH-HHHHhcc
Confidence 789999999999543 2234444
No 446
>PHA02542 41 41 helicase; Provisional
Probab=82.40 E-value=4.5 Score=36.16 Aligned_cols=26 Identities=15% Similarity=-0.001 Sum_probs=19.4
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCL 33 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~ 33 (252)
|.=+++.|.+|.||| +|.+-+.....
T Consensus 190 G~LiiIaarPgmGKT-tfalniA~~~a 215 (473)
T PHA02542 190 KTLNVLLAGVNVGKS-LGLCSLAADYL 215 (473)
T ss_pred CcEEEEEcCCCccHH-HHHHHHHHHHH
Confidence 444778999999999 77776665553
No 447
>PRK06904 replicative DNA helicase; Validated
Probab=82.38 E-value=4.9 Score=35.92 Aligned_cols=27 Identities=30% Similarity=0.199 Sum_probs=20.0
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCL 33 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~ 33 (252)
.|.=+++.|.+|.||| +|.+-+..++.
T Consensus 220 ~G~LiiIaarPg~GKT-afalnia~~~a 246 (472)
T PRK06904 220 PSDLIIVAARPSMGKT-TFAMNLCENAA 246 (472)
T ss_pred CCcEEEEEeCCCCChH-HHHHHHHHHHH
Confidence 4455778999999999 57777666554
No 448
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=82.10 E-value=6.1 Score=31.64 Aligned_cols=13 Identities=31% Similarity=0.281 Sum_probs=11.3
Q ss_pred EEEEcCCCchHHH
Q psy7786 10 IIGIAFTGSGKTL 22 (252)
Q Consensus 10 ~~~~a~tgsGKT~ 22 (252)
.++.++.|+|||.
T Consensus 4 ~ll~g~~G~GKS~ 16 (239)
T cd01125 4 SALVAPGGTGKSS 16 (239)
T ss_pred eEEEcCCCCCHHH
Confidence 4789999999994
No 449
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=81.99 E-value=1.1 Score=39.26 Aligned_cols=18 Identities=50% Similarity=0.654 Sum_probs=15.3
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
...++++.+|||||||..
T Consensus 107 ~~~~iLl~Gp~GtGKT~l 124 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLL 124 (412)
T ss_pred CCceEEEEcCCCCCHHHH
Confidence 457899999999999953
No 450
>PRK14530 adenylate kinase; Provisional
Probab=81.93 E-value=1 Score=35.51 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=15.0
Q ss_pred CCCcEEEEcCCCchHHH
Q psy7786 6 NSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~ 22 (252)
.|..+++.+++|||||.
T Consensus 2 ~~~~I~i~G~pGsGKsT 18 (215)
T PRK14530 2 SQPRILLLGAPGAGKGT 18 (215)
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57789999999999994
No 451
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=81.79 E-value=1.1 Score=34.03 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=15.3
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
.|+-+++.+++|||||..
T Consensus 1 ~~~~i~l~G~~gsGKst~ 18 (175)
T cd00227 1 TGRIIILNGGSSAGKSSI 18 (175)
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 377899999999999943
No 452
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=81.76 E-value=6.2 Score=37.03 Aligned_cols=69 Identities=19% Similarity=0.066 Sum_probs=46.8
Q ss_pred ChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 167 PTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 167 p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
.++-|..++.. .+..+++.+..|+|||.....-+...+.... -...+.|+++-||.-|..+.+.+.++.
T Consensus 3 Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-------v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 3 LNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-------YQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-------CCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 44556665533 2356888999999999876555444332211 012369999999999999999887664
No 453
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=81.70 E-value=0.91 Score=33.09 Aligned_cols=13 Identities=31% Similarity=0.378 Sum_probs=11.4
Q ss_pred EEEEcCCCchHHH
Q psy7786 10 IIGIAFTGSGKTL 22 (252)
Q Consensus 10 ~~~~a~tgsGKT~ 22 (252)
+++.+|||||||.
T Consensus 2 i~i~GpsGsGKst 14 (137)
T cd00071 2 IVLSGPSGVGKST 14 (137)
T ss_pred EEEECCCCCCHHH
Confidence 5789999999994
No 454
>PRK08840 replicative DNA helicase; Provisional
Probab=81.68 E-value=5.2 Score=35.67 Aligned_cols=28 Identities=29% Similarity=0.226 Sum_probs=20.4
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCL 33 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~ 33 (252)
..|.=+++.|.+|.||| +|.+-+...+.
T Consensus 215 ~~g~LiviaarPg~GKT-afalnia~~~a 242 (464)
T PRK08840 215 QGSDLIIVAARPSMGKT-TFAMNLCENAA 242 (464)
T ss_pred CCCceEEEEeCCCCchH-HHHHHHHHHHH
Confidence 34555788999999999 66666665553
No 455
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=81.68 E-value=4.3 Score=36.62 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=14.6
Q ss_pred CCCcEEEEcCCCchHH
Q psy7786 6 NSRDIIGIAFTGSGKT 21 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT 21 (252)
.|.-+++.+++|||||
T Consensus 30 ~Gs~~li~G~pGsGKT 45 (509)
T PRK09302 30 KGRPTLVSGTAGTGKT 45 (509)
T ss_pred CCcEEEEEeCCCCCHH
Confidence 5778999999999999
No 456
>PRK13531 regulatory ATPase RavA; Provisional
Probab=81.50 E-value=1 Score=40.13 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=18.4
Q ss_pred cccCCCcEEEEcCCCchHHHH
Q psy7786 3 TYRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~a 23 (252)
.++.|.++++.+|+|+|||..
T Consensus 35 aalag~hVLL~GpPGTGKT~L 55 (498)
T PRK13531 35 AALSGESVFLLGPPGIAKSLI 55 (498)
T ss_pred HHccCCCEEEECCCChhHHHH
Confidence 367899999999999999954
No 457
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=81.46 E-value=6.7 Score=34.70 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCchHHHHh
Q psy7786 7 SRDIIGIAFTGSGKTLVF 24 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~ 24 (252)
..-+++++++|+|||.+-
T Consensus 95 p~vI~lvG~~GsGKTTta 112 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTA 112 (437)
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 346889999999999543
No 458
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=81.44 E-value=6 Score=35.11 Aligned_cols=47 Identities=17% Similarity=0.187 Sum_probs=27.1
Q ss_pred CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHH
Q psy7786 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHD 64 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~ 64 (252)
..+++.+++|+|||... -.+.+.+.... .+.+++++. ..++..+...
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~--------~~~~v~yi~-~~~~~~~~~~ 195 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEKN--------PNAKVVYVT-SEKFTNDFVN 195 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhC--------CCCeEEEEE-HHHHHHHHHH
Confidence 45899999999999432 22334443321 245677664 4455554433
No 459
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=81.42 E-value=0.99 Score=39.78 Aligned_cols=22 Identities=32% Similarity=0.324 Sum_probs=18.4
Q ss_pred cccCCCcEEEEcCCCchHHHHh
Q psy7786 3 TYRNSRDIIGIAFTGSGKTLVF 24 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~a~ 24 (252)
.+..++++++.+++|+|||...
T Consensus 190 ~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 190 RLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred HHhcCCCEEEECCCCCCHHHHH
Confidence 3557899999999999999543
No 460
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=81.42 E-value=6.1 Score=36.91 Aligned_cols=66 Identities=24% Similarity=0.341 Sum_probs=45.5
Q ss_pred CChHHHHhhhhhhhcC-----CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q psy7786 166 KPTPIQVQGIPAALSG-----RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 240 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~~-----~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l 240 (252)
.|+.-|...+..+..+ +...+...+|+|||+.... ++ .+. +..+||+++++.+|.|+++.|
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~-~~----~~~---------~~p~Lvi~~n~~~A~ql~~el 74 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMAN-VI----AQV---------NRPTLVIAHNKTLAAQLYNEF 74 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHH-HH----HHh---------CCCEEEEECCHHHHHHHHHHH
Confidence 4666666666554332 2556888999999776332 22 211 234899999999999999999
Q ss_pred HHHHh
Q psy7786 241 QYYCA 245 (252)
Q Consensus 241 ~~l~~ 245 (252)
+.+.+
T Consensus 75 ~~f~p 79 (655)
T TIGR00631 75 KEFFP 79 (655)
T ss_pred HHhCC
Confidence 98753
No 461
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=81.41 E-value=6 Score=35.18 Aligned_cols=48 Identities=19% Similarity=0.133 Sum_probs=28.5
Q ss_pred CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHH
Q psy7786 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~ 65 (252)
..+++.+++|+|||.. +-.+.+.+.... .+.+++++.. .++..++.+.
T Consensus 142 npl~i~G~~G~GKTHL-l~Ai~~~l~~~~--------~~~~v~yv~~-~~f~~~~~~~ 189 (450)
T PRK14087 142 NPLFIYGESGMGKTHL-LKAAKNYIESNF--------SDLKVSYMSG-DEFARKAVDI 189 (450)
T ss_pred CceEEECCCCCcHHHH-HHHHHHHHHHhC--------CCCeEEEEEH-HHHHHHHHHH
Confidence 3588999999999922 233344443322 2456777654 5666665443
No 462
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=81.34 E-value=1.4 Score=31.78 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=16.5
Q ss_pred ccCCCcEEEEcCCCchHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~ 22 (252)
+..|.-+.+.+++|||||.
T Consensus 8 i~~g~~~~i~G~nGsGKSt 26 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKST 26 (137)
T ss_dssp EETTSEEEEEESTTSSHHH
T ss_pred EcCCCEEEEEccCCCcccc
Confidence 4568889999999999994
No 463
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=81.32 E-value=1.8 Score=33.54 Aligned_cols=12 Identities=50% Similarity=0.376 Sum_probs=10.6
Q ss_pred EEEEcCCCchHH
Q psy7786 10 IIGIAFTGSGKT 21 (252)
Q Consensus 10 ~~~~a~tgsGKT 21 (252)
|-+++++|||||
T Consensus 2 IgI~G~sgSGKT 13 (194)
T PF00485_consen 2 IGIAGPSGSGKT 13 (194)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 458899999999
No 464
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=81.28 E-value=1.1 Score=37.75 Aligned_cols=19 Identities=21% Similarity=0.559 Sum_probs=16.4
Q ss_pred ccCCCcEEEEcCCCchHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~ 22 (252)
+..++++++.+++|+|||.
T Consensus 61 l~~~~~ilL~G~pGtGKTt 79 (327)
T TIGR01650 61 FAYDRRVMVQGYHGTGKST 79 (327)
T ss_pred HhcCCcEEEEeCCCChHHH
Confidence 3458899999999999994
No 465
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=81.28 E-value=1 Score=35.79 Aligned_cols=16 Identities=25% Similarity=0.237 Sum_probs=14.1
Q ss_pred CCCcEEEEcCCCchHH
Q psy7786 6 NSRDIIGIAFTGSGKT 21 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT 21 (252)
.++.+++.+++|||||
T Consensus 41 ~~~~~~l~G~~G~GKT 56 (227)
T PRK08903 41 ADRFFYLWGEAGSGRS 56 (227)
T ss_pred CCCeEEEECCCCCCHH
Confidence 3567999999999999
No 466
>KOG1002|consensus
Probab=81.19 E-value=5.2 Score=35.64 Aligned_cols=61 Identities=21% Similarity=0.259 Sum_probs=38.3
Q ss_pred EEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCcc
Q psy7786 11 IGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVP 87 (252)
Q Consensus 11 ~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~~ 87 (252)
+++.+-|.|||.- .+..++.+. ++...|+++|+.+|. |=.+++..+.. | .+++...+|...
T Consensus 208 iLADEMGMGKTIQ----tIaLllae~--------~ra~tLVvaP~VAlm-QW~nEI~~~T~--g-slkv~~YhG~~R 268 (791)
T KOG1002|consen 208 ILADEMGMGKTIQ----TIALLLAEV--------DRAPTLVVAPTVALM-QWKNEIERHTS--G-SLKVYIYHGAKR 268 (791)
T ss_pred eehhhhccchHHH----HHHHHHhcc--------ccCCeeEEccHHHHH-HHHHHHHHhcc--C-ceEEEEEecccc
Confidence 5667889999943 333344443 244489999999986 34444555444 3 377777776633
No 467
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=81.11 E-value=1.1 Score=39.06 Aligned_cols=18 Identities=50% Similarity=0.658 Sum_probs=15.2
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
.+.++++.+|||+|||..
T Consensus 115 ~~~~iLL~GP~GsGKT~l 132 (413)
T TIGR00382 115 SKSNILLIGPTGSGKTLL 132 (413)
T ss_pred CCceEEEECCCCcCHHHH
Confidence 356899999999999954
No 468
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=81.03 E-value=2.6 Score=40.24 Aligned_cols=15 Identities=40% Similarity=0.492 Sum_probs=13.5
Q ss_pred CcEEEEcCCCchHHH
Q psy7786 8 RDIIGIAFTGSGKTL 22 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~ 22 (252)
.+.+|+++||+|||.
T Consensus 437 ghT~I~G~tGaGKTv 451 (796)
T COG3451 437 GHTLIIGPTGAGKTV 451 (796)
T ss_pred CCeEEECCCCCCHHH
Confidence 489999999999993
No 469
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=80.99 E-value=3.5 Score=37.02 Aligned_cols=54 Identities=15% Similarity=0.133 Sum_probs=30.4
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l 69 (252)
-.|+-+++.+++|||||.-..-=+.+.+... +-.++|++- -|=..++.+.+..+
T Consensus 19 p~g~~~Li~G~pGsGKT~la~qfl~~g~~~~----------ge~~lyvs~-eE~~~~l~~~~~~~ 72 (484)
T TIGR02655 19 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIHF----------DEPGVFVTF-EESPQDIIKNARSF 72 (484)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC----------CCCEEEEEE-ecCHHHHHHHHHHc
Confidence 4678899999999999933221222222221 234777763 34444554444444
No 470
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=80.88 E-value=5.9 Score=37.46 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=48.8
Q ss_pred CChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHh
Q psy7786 166 KPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCA 245 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~ 245 (252)
..++-|..++.. .+..+++.+..|+|||.....-+...+ .+.. -...+.|+++-|+.-|..+.+.+.++..
T Consensus 4 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li-~~~~------v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 4 GLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLL-SVEN------ASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred ccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHH-HcCC------CCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 456677766643 245689999999999987554444333 2210 1123689999999999999999887654
No 471
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=80.87 E-value=0.52 Score=36.33 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=16.3
Q ss_pred cccCCCc--EEEEcCCCchHHHH
Q psy7786 3 TYRNSRD--IIGIAFTGSGKTLV 23 (252)
Q Consensus 3 ~~~~g~d--~~~~a~tgsGKT~a 23 (252)
.+++|.| +++-++||||||.+
T Consensus 18 ~~~~G~n~~i~~yG~tGsGKT~T 40 (186)
T cd01363 18 SALDGYNVCIFAYGQTGSGKTYT 40 (186)
T ss_pred HHhCCcceeEEEECCCCCcceEe
Confidence 4567776 57788999999955
No 472
>PRK08006 replicative DNA helicase; Provisional
Probab=80.87 E-value=6.1 Score=35.32 Aligned_cols=27 Identities=30% Similarity=0.199 Sum_probs=20.3
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCL 33 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~ 33 (252)
.|.=+++.|.+|.||| +|.+-+..++.
T Consensus 223 ~G~LiiIaarPgmGKT-afalnia~~~a 249 (471)
T PRK08006 223 PSDLIIVAARPSMGKT-TFAMNLCENAA 249 (471)
T ss_pred CCcEEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 4455788999999999 77777665553
No 473
>PRK00300 gmk guanylate kinase; Provisional
Probab=80.78 E-value=1.1 Score=34.93 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=15.7
Q ss_pred cCCCcEEEEcCCCchHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~ 22 (252)
..|+=+++.+++|||||.
T Consensus 3 ~~g~~i~i~G~sGsGKst 20 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKST 20 (205)
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 467889999999999994
No 474
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=80.69 E-value=6.3 Score=34.38 Aligned_cols=46 Identities=15% Similarity=0.096 Sum_probs=27.0
Q ss_pred CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHH
Q psy7786 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 63 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~ 63 (252)
..+++.+++|+|||... -.+.+.+.... .+.+++++.. .++..++.
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~--------~~~~v~yi~~-~~~~~~~~ 182 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENN--------PNAKVVYVSS-EKFTNDFV 182 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhC--------CCCcEEEEEH-HHHHHHHH
Confidence 35789999999999432 33444443321 2456777753 45554443
No 475
>PRK00131 aroK shikimate kinase; Reviewed
Probab=80.62 E-value=1.4 Score=33.09 Aligned_cols=18 Identities=33% Similarity=0.586 Sum_probs=15.7
Q ss_pred cCCCcEEEEcCCCchHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~ 22 (252)
..++.+++.+++|||||.
T Consensus 2 ~~~~~i~l~G~~GsGKst 19 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKST 19 (175)
T ss_pred CCCCeEEEEcCCCCCHHH
Confidence 467889999999999994
No 476
>KOG1131|consensus
Probab=80.62 E-value=8.2 Score=34.72 Aligned_cols=57 Identities=12% Similarity=0.095 Sum_probs=33.0
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l 69 (252)
.+-+.++.-|+|||||.+.+--++.+.+.-+. ...+.++-+-|-.=......+++.+
T Consensus 34 akGh~llEMPSGTGKTvsLLSli~aYq~~~p~-------~~~KliYCSRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 34 AKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD-------EHRKLIYCSRTVPEIEKALEELKRL 90 (755)
T ss_pred cCCcEEEECCCCCCcchHHHHHHHHHHHhCCc-------ccceEEEecCcchHHHHHHHHHHHH
Confidence 45578899999999998876555555444331 1334555555544333333444443
No 477
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=80.39 E-value=1.1 Score=38.57 Aligned_cols=15 Identities=47% Similarity=0.521 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHH
Q psy7786 9 DIIGIAFTGSGKTLV 23 (252)
Q Consensus 9 d~~~~a~tgsGKT~a 23 (252)
|+++-++||||||.+
T Consensus 44 n~~iyG~~GTGKT~~ 58 (366)
T COG1474 44 NIIIYGPTGTGKTAT 58 (366)
T ss_pred cEEEECCCCCCHhHH
Confidence 699999999999965
No 478
>PRK08084 DNA replication initiation factor; Provisional
Probab=80.21 E-value=1.2 Score=35.82 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=14.5
Q ss_pred CCCcEEEEcCCCchHHH
Q psy7786 6 NSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~ 22 (252)
.+..+++.+|+|+|||.
T Consensus 44 ~~~~l~l~Gp~G~GKTh 60 (235)
T PRK08084 44 HSGYIYLWSREGAGRSH 60 (235)
T ss_pred CCCeEEEECCCCCCHHH
Confidence 34679999999999993
No 479
>KOG1803|consensus
Probab=80.17 E-value=6.4 Score=35.87 Aligned_cols=64 Identities=22% Similarity=0.239 Sum_probs=44.9
Q ss_pred ChHHHHhhhhhhhcCCc-EEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 167 PTPIQVQGIPAALSGRD-IIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241 (252)
Q Consensus 167 p~~iQ~~~~p~~~~~~~-~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~ 241 (252)
...-|..++......++ ..++.++|+|||..... ++..+..+ +.|+||-+||+.-++.+.+++-
T Consensus 186 ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvE-iI~qlvk~----------~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 186 LNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVE-IISQLVKQ----------KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHH-HHHHHHHc----------CCeEEEEcCchHHHHHHHHHhc
Confidence 34577777877777744 56677899999876433 23223322 4579999999999999888653
No 480
>PRK07261 topology modulation protein; Provisional
Probab=80.07 E-value=1.2 Score=33.90 Aligned_cols=15 Identities=40% Similarity=0.687 Sum_probs=12.6
Q ss_pred cEEEEcCCCchHHHH
Q psy7786 9 DIIGIAFTGSGKTLV 23 (252)
Q Consensus 9 d~~~~a~tgsGKT~a 23 (252)
-+++.+++|||||..
T Consensus 2 ri~i~G~~GsGKSTl 16 (171)
T PRK07261 2 KIAIIGYSGSGKSTL 16 (171)
T ss_pred EEEEEcCCCCCHHHH
Confidence 378999999999943
No 481
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=80.06 E-value=1.3 Score=36.91 Aligned_cols=51 Identities=18% Similarity=0.122 Sum_probs=29.5
Q ss_pred EEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 10 IIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69 (252)
Q Consensus 10 ~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l 69 (252)
.+|-+||||||+- ++..++....-.| ..=.+++|+|++.-.--.+..+.+.
T Consensus 90 ~~VYGPTG~GKSq-----LlRNLis~~lI~P----~PETVfFItP~~~mIpp~E~~aW~~ 140 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ-----LLRNLISCQLIQP----PPETVFFITPQKDMIPPQEITAWET 140 (369)
T ss_pred EEEECCCCCCHHH-----HHHHhhhcCcccC----CCCceEEECCCCCCCCHHHHHHHHH
Confidence 4678999999982 1222332221111 1124899999998766555544433
No 482
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=80.02 E-value=1.2 Score=36.91 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=16.3
Q ss_pred cEEEEcCCCchHHHHhHHHHHH
Q psy7786 9 DIIGIAFTGSGKTLVFVLPILM 30 (252)
Q Consensus 9 d~~~~a~tgsGKT~a~~lp~~~ 30 (252)
++++++++|+||| +|+=.+++
T Consensus 6 nImVvG~sG~GKT-TFIntL~~ 26 (281)
T PF00735_consen 6 NIMVVGESGLGKT-TFINTLFN 26 (281)
T ss_dssp EEEEEECTTSSHH-HHHHHHHT
T ss_pred EEEEECCCCCCHH-HHHHHHHh
Confidence 5899999999999 66544443
No 483
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=80.00 E-value=1 Score=37.73 Aligned_cols=15 Identities=40% Similarity=0.412 Sum_probs=12.8
Q ss_pred CcEEEEcCCCchHHH
Q psy7786 8 RDIIGIAFTGSGKTL 22 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~ 22 (252)
+=+++++|||||||.
T Consensus 5 ~~i~i~GptgsGKt~ 19 (307)
T PRK00091 5 KVIVIVGPTASGKTA 19 (307)
T ss_pred eEEEEECCCCcCHHH
Confidence 447899999999993
No 484
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=79.98 E-value=3.6 Score=37.15 Aligned_cols=53 Identities=21% Similarity=0.137 Sum_probs=31.0
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l 69 (252)
-.|.-+++.+++|+|||. |++-.+..... .+-+++|++- -+-..|+.+.++.+
T Consensus 271 ~~g~~~li~G~~G~GKT~-l~~~~~~~~~~----------~g~~~~yis~-e~~~~~i~~~~~~~ 323 (509)
T PRK09302 271 FRGSIILVSGATGTGKTL-LASKFAEAACR----------RGERCLLFAF-EESRAQLIRNARSW 323 (509)
T ss_pred CCCcEEEEEcCCCCCHHH-HHHHHHHHHHh----------CCCcEEEEEe-cCCHHHHHHHHHHc
Confidence 346778899999999993 33332322222 1345777753 34455665555443
No 485
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=79.52 E-value=1.2 Score=32.78 Aligned_cols=14 Identities=50% Similarity=0.603 Sum_probs=12.0
Q ss_pred EEEEcCCCchHHHH
Q psy7786 10 IIGIAFTGSGKTLV 23 (252)
Q Consensus 10 ~~~~a~tgsGKT~a 23 (252)
+++.+++|+|||..
T Consensus 2 ~~i~G~~G~GKT~l 15 (165)
T cd01120 2 ILVFGPTGSGKTTL 15 (165)
T ss_pred eeEeCCCCCCHHHH
Confidence 57899999999943
No 486
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=79.35 E-value=3.5 Score=32.70 Aligned_cols=14 Identities=21% Similarity=0.036 Sum_probs=11.0
Q ss_pred EEEEcCCCchHHHH
Q psy7786 10 IIGIAFTGSGKTLV 23 (252)
Q Consensus 10 ~~~~a~tgsGKT~a 23 (252)
+-+.+++|||||..
T Consensus 2 igI~G~sGSGKTTl 15 (220)
T cd02025 2 IGIAGSVAVGKSTT 15 (220)
T ss_pred EEeeCCCCCCHHHH
Confidence 34789999999943
No 487
>PRK05636 replicative DNA helicase; Provisional
Probab=79.30 E-value=6.7 Score=35.40 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=17.8
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFC 32 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~ 32 (252)
|.=+++.|.+|+||| +|.+-+...+
T Consensus 265 G~Liiiaarpg~GKT-~~al~~a~~~ 289 (505)
T PRK05636 265 GQMIIVAARPGVGKS-TLALDFMRSA 289 (505)
T ss_pred CceEEEEeCCCCCHH-HHHHHHHHHH
Confidence 444688999999999 5566555443
No 488
>PRK08760 replicative DNA helicase; Provisional
Probab=79.29 E-value=3.7 Score=36.77 Aligned_cols=27 Identities=33% Similarity=0.313 Sum_probs=20.5
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCL 33 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~ 33 (252)
.|.=+++.|.+|+||| +|.+-+...+.
T Consensus 228 ~G~LivIaarPg~GKT-afal~iA~~~a 254 (476)
T PRK08760 228 PTDLIILAARPAMGKT-TFALNIAEYAA 254 (476)
T ss_pred CCceEEEEeCCCCChh-HHHHHHHHHHH
Confidence 4555788999999999 77777766554
No 489
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=79.24 E-value=7.6 Score=36.90 Aligned_cols=74 Identities=23% Similarity=0.227 Sum_probs=56.9
Q ss_pred EEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCcccCc
Q psy7786 11 IGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQ 90 (252)
Q Consensus 11 ~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~~~~~ 90 (252)
++--.||=|||++..+|+.-..+.. -.+.+++-.-=||..-..++..+-+.+| +.+.+...+.+..+
T Consensus 97 iaEM~TGEGKTL~atlp~ylnaL~g-----------kgVhvVTvNdYLA~RDae~m~~l~~~LG--lsvG~~~~~m~~~e 163 (822)
T COG0653 97 IAEMRTGEGKTLVATLPAYLNALAG-----------KGVHVVTVNDYLARRDAEWMGPLYEFLG--LSVGVILAGMSPEE 163 (822)
T ss_pred eeeeecCCchHHHHHHHHHHHhcCC-----------CCcEEeeehHHhhhhCHHHHHHHHHHcC--CceeeccCCCChHH
Confidence 5667899999999999987555443 3467778788888888888999999988 78888777776666
Q ss_pred chhhhhh
Q psy7786 91 SLDVIKK 97 (252)
Q Consensus 91 ~~~~l~~ 97 (252)
+.+....
T Consensus 164 k~~aY~~ 170 (822)
T COG0653 164 KRAAYAC 170 (822)
T ss_pred HHHHHhc
Confidence 6555543
No 490
>PRK06321 replicative DNA helicase; Provisional
Probab=79.11 E-value=6.3 Score=35.27 Aligned_cols=26 Identities=31% Similarity=0.146 Sum_probs=19.2
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCL 33 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~ 33 (252)
|.=+++.|.+|.||| +|.+-+...+.
T Consensus 226 G~LiiiaarPgmGKT-afal~ia~~~a 251 (472)
T PRK06321 226 SNLMILAARPAMGKT-ALALNIAENFC 251 (472)
T ss_pred CcEEEEEeCCCCChH-HHHHHHHHHHH
Confidence 334678999999999 67777666553
No 491
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=79.03 E-value=4.6 Score=38.20 Aligned_cols=21 Identities=24% Similarity=0.153 Sum_probs=16.5
Q ss_pred CCCcEEEEcCCCchHHHHhHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVL 26 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~l 26 (252)
.|+=+.+.+|||+|||.+...
T Consensus 184 ~g~Vi~lVGpnGvGKTTTiaK 204 (767)
T PRK14723 184 QGGVLALVGPTGVGKTTTTAK 204 (767)
T ss_pred CCeEEEEECCCCCcHHHHHHH
Confidence 355678999999999976543
No 492
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=78.99 E-value=1.3 Score=36.09 Aligned_cols=16 Identities=25% Similarity=0.528 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCchHHH
Q psy7786 7 SRDIIGIAFTGSGKTL 22 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~ 22 (252)
-|+++.-+|+|||||+
T Consensus 151 PknVLFyGppGTGKTm 166 (368)
T COG1223 151 PKNVLFYGPPGTGKTM 166 (368)
T ss_pred cceeEEECCCCccHHH
Confidence 3789999999999995
No 493
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=78.97 E-value=3.2 Score=39.70 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=27.5
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHH
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRE 57 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptre 57 (252)
+.+++|.++||||||..--. ++..++. .+.+++|+=|..+
T Consensus 430 n~n~~I~G~tGsGKS~~~~~-l~~~~~~----------~g~~v~iiD~~~s 469 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFMQE-LIVDNLS----------RGGKVWVIDVGRS 469 (797)
T ss_pred ccceEEEcCCCCCHHHHHHH-HHHHHHh----------CCCEEEEEeCCCC
Confidence 45899999999999965433 3333332 2567888878764
No 494
>PLN03025 replication factor C subunit; Provisional
Probab=78.96 E-value=1.9 Score=36.35 Aligned_cols=15 Identities=33% Similarity=0.397 Sum_probs=13.2
Q ss_pred CcEEEEcCCCchHHH
Q psy7786 8 RDIIGIAFTGSGKTL 22 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~ 22 (252)
.++++.+|+|+|||.
T Consensus 35 ~~lll~Gp~G~GKTt 49 (319)
T PLN03025 35 PNLILSGPPGTGKTT 49 (319)
T ss_pred ceEEEECCCCCCHHH
Confidence 468999999999993
No 495
>KOG0926|consensus
Probab=78.81 E-value=7.6 Score=36.80 Aligned_cols=23 Identities=9% Similarity=-0.000 Sum_probs=19.5
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 221 PYGLIICPSRELARQTHDIIQYY 243 (252)
Q Consensus 221 ~~~LIf~~tr~~a~~i~~~l~~l 243 (252)
.-.|||+---.-++|+.+.|++-
T Consensus 482 G~ILVFvTGQqEV~qL~~kLRK~ 504 (1172)
T KOG0926|consen 482 GGILVFVTGQQEVDQLCEKLRKR 504 (1172)
T ss_pred CcEEEEEeChHHHHHHHHHHHhh
Confidence 35899999999999999998865
No 496
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=78.67 E-value=6.7 Score=38.12 Aligned_cols=52 Identities=23% Similarity=0.193 Sum_probs=38.9
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 181 GRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241 (252)
Q Consensus 181 ~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~ 241 (252)
..++.+.+.||+|||..++-.++..... .+..+.||+||+...-+.+.+.++
T Consensus 59 ~~n~~~~M~TGtGKT~~~~~~i~~l~~~---------~~~~~fii~vp~~aI~egv~~~l~ 110 (986)
T PRK15483 59 KANIDIKMETGTGKTYVYTRLMYELHQK---------YGLFKFIIVVPTPAIKEGTRNFIQ 110 (986)
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHHHHH---------cCCcEEEEEeCCHHHHHHHHHHhh
Confidence 3688999999999999887766543322 124579999999888777776665
No 497
>PRK06749 replicative DNA helicase; Provisional
Probab=78.67 E-value=6.1 Score=34.88 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=21.1
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCL 33 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~ 33 (252)
.|.=+++.|.+|.||| +|.+-+..++.
T Consensus 185 ~G~LiiIaarPgmGKT-afal~ia~~~a 211 (428)
T PRK06749 185 EGDFVVLGARPSMGKT-AFALNVGLHAA 211 (428)
T ss_pred CCcEEEEEeCCCCCch-HHHHHHHHHHH
Confidence 4555788999999999 78777776664
No 498
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=78.66 E-value=6.2 Score=33.39 Aligned_cols=42 Identities=24% Similarity=0.120 Sum_probs=27.6
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSREL 58 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreL 58 (252)
.|+=+.+.+|+||||| .+++.++..... .+-.++++..-..+
T Consensus 54 ~G~iteI~Gp~GsGKT-tLal~~~~~~~~----------~g~~~vyId~E~~~ 95 (325)
T cd00983 54 KGRIIEIYGPESSGKT-TLALHAIAEAQK----------LGGTVAFIDAEHAL 95 (325)
T ss_pred CCeEEEEECCCCCCHH-HHHHHHHHHHHH----------cCCCEEEECccccH
Confidence 4667889999999999 666665544332 13457777654433
No 499
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=78.63 E-value=1.8 Score=31.47 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=15.3
Q ss_pred cCCCcEEEEcCCCchHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a 23 (252)
..+..+++.+++||||+..
T Consensus 19 ~~~~pvli~GE~GtGK~~~ 37 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLL 37 (138)
T ss_dssp CSSS-EEEECCTTSSHHHH
T ss_pred CCCCcEEEEcCCCCCHHHH
Confidence 4567899999999999964
No 500
>PRK08118 topology modulation protein; Reviewed
Probab=78.59 E-value=1.4 Score=33.35 Aligned_cols=14 Identities=50% Similarity=0.560 Sum_probs=12.4
Q ss_pred cEEEEcCCCchHHH
Q psy7786 9 DIIGIAFTGSGKTL 22 (252)
Q Consensus 9 d~~~~a~tgsGKT~ 22 (252)
-+++.+++|||||.
T Consensus 3 rI~I~G~~GsGKST 16 (167)
T PRK08118 3 KIILIGSGGSGKST 16 (167)
T ss_pred EEEEECCCCCCHHH
Confidence 48999999999993
Done!