Query psy7786
Match_columns 252
No_of_seqs 219 out of 2318
Neff 9.9
Searched_HMMs 29240
Date Fri Aug 16 18:49:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7786.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7786hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 99.9 2.3E-27 7.9E-32 206.1 6.8 145 1-162 87-231 (434)
2 2i4i_A ATP-dependent RNA helic 99.9 1E-24 3.5E-29 188.1 5.7 147 1-161 46-202 (417)
3 3fe2_A Probable ATP-dependent 99.9 1.3E-24 4.6E-29 174.5 -0.0 144 1-161 60-203 (242)
4 3i5x_A ATP-dependent RNA helic 99.9 8.5E-23 2.9E-27 182.8 10.7 144 2-160 104-252 (563)
5 3sqw_A ATP-dependent RNA helic 99.9 1E-22 3.5E-27 182.9 10.8 144 2-160 53-201 (579)
6 2j0s_A ATP-dependent RNA helic 99.9 3.1E-23 1.1E-27 178.5 5.4 139 1-161 68-206 (410)
7 1wrb_A DJVLGB; RNA helicase, D 99.9 9.6E-24 3.3E-28 170.6 0.9 148 1-162 54-202 (253)
8 3fmo_B ATP-dependent RNA helic 99.9 9.5E-24 3.2E-28 174.7 -0.8 135 1-159 123-261 (300)
9 3ly5_A ATP-dependent RNA helic 99.9 1.4E-23 4.8E-28 170.5 -1.1 145 1-162 85-229 (262)
10 3iuy_A Probable ATP-dependent 99.9 3.4E-23 1.2E-27 164.8 -0.2 145 1-162 51-195 (228)
11 3ber_A Probable ATP-dependent 99.9 4.9E-23 1.7E-27 166.1 0.6 140 1-161 74-213 (249)
12 3oiy_A Reverse gyrase helicase 99.8 5.4E-22 1.9E-26 171.2 6.6 137 1-160 30-177 (414)
13 1q0u_A Bstdead; DEAD protein, 99.8 5.4E-23 1.8E-27 162.6 -1.8 140 2-161 36-177 (219)
14 3bor_A Human initiation factor 99.8 8.1E-23 2.8E-27 163.6 -1.3 139 1-161 61-200 (237)
15 3eiq_A Eukaryotic initiation f 99.8 6.6E-22 2.2E-26 170.3 3.4 139 2-162 72-211 (414)
16 2pl3_A Probable ATP-dependent 99.8 3E-22 1E-26 160.1 -0.1 142 2-161 57-198 (236)
17 1s2m_A Putative ATP-dependent 99.8 5.2E-22 1.8E-26 170.3 1.4 120 2-138 53-172 (400)
18 1vec_A ATP-dependent RNA helic 99.8 2.4E-22 8.4E-27 157.2 -0.7 139 2-161 35-173 (206)
19 3fmp_B ATP-dependent RNA helic 99.8 2.5E-22 8.7E-27 176.4 -0.9 135 2-159 124-261 (479)
20 1xti_A Probable ATP-dependent 99.8 2.3E-21 7.8E-26 165.7 4.5 138 2-160 40-179 (391)
21 2oxc_A Probable ATP-dependent 99.8 1.1E-21 3.9E-26 156.2 2.3 138 2-161 56-194 (230)
22 4ddu_A Reverse gyrase; topoiso 99.8 2.9E-21 1E-25 183.4 5.2 137 1-160 87-234 (1104)
23 3tbk_A RIG-I helicase domain; 99.8 2E-20 6.8E-25 166.6 9.4 123 2-138 14-136 (555)
24 1tf5_A Preprotein translocase 99.8 2.5E-20 8.6E-25 169.2 10.0 114 1-138 92-212 (844)
25 1qde_A EIF4A, translation init 99.8 9E-22 3.1E-26 156.0 -0.8 137 2-161 46-182 (224)
26 1gku_B Reverse gyrase, TOP-RG; 99.8 3.4E-21 1.2E-25 182.8 1.7 132 1-164 65-203 (1054)
27 3fht_A ATP-dependent RNA helic 99.8 1.5E-20 5.2E-25 161.5 5.3 136 2-160 57-195 (412)
28 4a2p_A RIG-I, retinoic acid in 99.8 2.6E-20 8.9E-25 166.1 6.0 124 1-138 16-139 (556)
29 3dkp_A Probable ATP-dependent 99.8 6.2E-21 2.1E-25 153.3 1.6 140 1-161 60-205 (245)
30 1fuu_A Yeast initiation factor 99.8 1.2E-20 4.1E-25 161.3 3.0 138 2-162 53-190 (394)
31 2gxq_A Heat resistant RNA depe 99.8 4.6E-21 1.6E-25 150.0 -1.2 138 2-160 33-170 (207)
32 1t6n_A Probable ATP-dependent 99.8 3.2E-21 1.1E-25 152.5 -3.0 136 2-158 46-183 (220)
33 3pey_A ATP-dependent RNA helic 99.8 1.9E-19 6.4E-24 153.7 6.3 132 2-159 37-171 (395)
34 1hv8_A Putative ATP-dependent 99.8 4.6E-19 1.6E-23 149.8 7.9 136 2-161 38-174 (367)
35 2ykg_A Probable ATP-dependent 99.8 1.7E-18 5.9E-23 158.5 11.7 122 2-138 23-145 (696)
36 4a2q_A RIG-I, retinoic acid in 99.8 5.8E-19 2E-23 163.9 7.6 122 2-138 258-380 (797)
37 4f92_B U5 small nuclear ribonu 99.8 9.1E-19 3.1E-23 172.0 8.7 123 4-138 92-216 (1724)
38 2z0m_A 337AA long hypothetical 99.7 3.6E-19 1.2E-23 148.9 4.1 132 2-162 26-157 (337)
39 3l9o_A ATP-dependent RNA helic 99.7 3.5E-18 1.2E-22 162.5 10.8 125 1-161 193-317 (1108)
40 1nkt_A Preprotein translocase 99.7 2.1E-18 7.1E-23 156.8 7.9 115 1-138 120-240 (922)
41 3fho_A ATP-dependent RNA helic 99.7 1.8E-19 6.1E-24 159.4 -0.5 135 2-162 151-288 (508)
42 2fsf_A Preprotein translocase 99.7 5.5E-19 1.9E-23 160.2 2.5 115 1-138 83-203 (853)
43 1oyw_A RECQ helicase, ATP-depe 99.7 3.4E-17 1.1E-21 145.1 13.8 123 1-155 34-162 (523)
44 2v1x_A ATP-dependent DNA helic 99.7 3.1E-17 1.1E-21 147.1 13.6 124 1-155 53-188 (591)
45 4a2w_A RIG-I, retinoic acid in 99.7 2.6E-18 8.7E-23 161.7 6.7 122 2-138 258-380 (936)
46 2whx_A Serine protease/ntpase/ 99.7 9.8E-19 3.3E-23 157.4 3.5 182 1-243 180-378 (618)
47 2zj8_A DNA helicase, putative 99.7 2.1E-18 7.2E-23 158.5 5.8 130 4-161 36-165 (720)
48 2va8_A SSO2462, SKI2-type heli 99.7 1.1E-17 3.6E-22 153.8 9.8 128 4-159 43-170 (715)
49 3fe2_A Probable ATP-dependent 99.7 1.3E-16 4.6E-21 127.7 14.9 127 121-250 6-132 (242)
50 1yks_A Genome polyprotein [con 99.7 2.9E-18 9.9E-23 148.9 4.2 99 2-138 3-108 (440)
51 2p6r_A Afuhel308 helicase; pro 99.7 3.4E-18 1.2E-22 156.8 4.5 127 2-157 35-161 (702)
52 3o8b_A HCV NS3 protease/helica 99.7 3.8E-18 1.3E-22 153.1 3.6 187 2-243 227-419 (666)
53 4gl2_A Interferon-induced heli 99.7 3.1E-17 1E-21 150.3 5.7 122 2-138 17-145 (699)
54 2z83_A Helicase/nucleoside tri 99.7 1.7E-17 5.9E-22 144.8 3.8 55 3-67 17-71 (459)
55 4f92_B U5 small nuclear ribonu 99.7 1.9E-16 6.6E-21 155.7 11.6 113 5-138 940-1055(1724)
56 2db3_A ATP-dependent RNA helic 99.7 8.9E-16 3E-20 133.2 14.3 118 130-250 42-159 (434)
57 2wv9_A Flavivirin protease NS2 99.7 2.9E-17 9.8E-22 148.9 4.3 100 1-138 229-341 (673)
58 2xgj_A ATP-dependent RNA helic 99.7 2.5E-16 8.5E-21 148.6 10.2 123 2-160 96-218 (1010)
59 3dkp_A Probable ATP-dependent 99.7 1.1E-15 3.7E-20 122.5 12.4 119 124-249 5-127 (245)
60 4a4z_A Antiviral helicase SKI2 99.6 6.7E-17 2.3E-21 152.4 5.6 127 1-161 48-174 (997)
61 3b6e_A Interferon-induced heli 99.6 9.8E-17 3.3E-21 125.9 4.5 135 2-155 43-183 (216)
62 2jlq_A Serine protease subunit 99.6 1.2E-16 4.1E-21 139.3 5.4 57 1-67 12-69 (451)
63 2ipc_A Preprotein translocase 99.6 2.9E-17 9.8E-22 149.2 0.9 115 1-138 88-211 (997)
64 2v6i_A RNA helicase; membrane, 99.6 1.4E-16 4.7E-21 138.0 5.1 52 6-67 1-52 (431)
65 3fmo_B ATP-dependent RNA helic 99.6 5E-15 1.7E-19 122.3 12.0 109 131-247 76-189 (300)
66 1wrb_A DJVLGB; RNA helicase, D 99.6 7.3E-15 2.5E-19 118.3 8.4 121 130-250 7-130 (253)
67 2i4i_A ATP-dependent RNA helic 99.6 4.5E-14 1.5E-18 121.4 13.4 119 132-250 3-131 (417)
68 3bor_A Human initiation factor 99.5 1.7E-14 5.8E-19 115.1 9.7 103 139-249 25-127 (237)
69 3ber_A Probable ATP-dependent 99.5 5E-14 1.7E-18 113.2 12.0 100 143-250 42-141 (249)
70 1wp9_A ATP-dependent RNA helic 99.5 2.9E-14 1E-18 124.3 10.8 115 3-138 20-134 (494)
71 2oxc_A Probable ATP-dependent 99.5 4.5E-14 1.5E-18 112.1 11.0 101 139-247 19-119 (230)
72 2pl3_A Probable ATP-dependent 99.5 8.7E-14 3E-18 110.8 12.1 104 142-249 23-126 (236)
73 1q0u_A Bstdead; DEAD protein, 99.5 6.2E-14 2.1E-18 110.4 10.7 96 144-247 4-99 (219)
74 1qde_A EIF4A, translation init 99.5 6.8E-14 2.3E-18 110.4 10.9 103 139-249 9-111 (224)
75 3iuy_A Probable ATP-dependent 99.5 6E-14 2E-18 111.1 10.3 106 137-244 12-118 (228)
76 2eyq_A TRCF, transcription-rep 99.5 1.2E-13 4.2E-18 132.1 13.5 107 7-138 622-734 (1151)
77 1vec_A ATP-dependent RNA helic 99.5 1.2E-13 4.2E-18 107.5 10.9 96 144-247 3-98 (206)
78 1gm5_A RECG; helicase, replica 99.5 1.2E-14 4.2E-19 133.5 4.9 106 8-138 390-499 (780)
79 1t6n_A Probable ATP-dependent 99.5 2.5E-13 8.5E-18 106.9 11.2 96 144-247 14-109 (220)
80 2gxq_A Heat resistant RNA depe 99.5 2.6E-13 8.7E-18 105.7 10.2 98 145-247 2-99 (207)
81 3rc3_A ATP-dependent RNA helic 99.5 1.6E-13 5.3E-18 124.3 9.5 114 4-162 152-267 (677)
82 3ly5_A ATP-dependent RNA helic 99.5 3.8E-13 1.3E-17 108.9 10.5 101 145-249 53-155 (262)
83 3crv_A XPD/RAD3 related DNA he 99.4 1.9E-14 6.4E-19 128.4 1.2 69 3-87 18-86 (551)
84 3llm_A ATP-dependent RNA helic 99.4 1.9E-14 6.4E-19 114.7 0.5 115 2-138 71-185 (235)
85 2j0s_A ATP-dependent RNA helic 99.4 7.5E-13 2.6E-17 113.6 10.2 101 142-250 35-135 (410)
86 1rif_A DAR protein, DNA helica 99.4 2.7E-13 9.4E-18 110.8 5.4 110 4-138 125-234 (282)
87 3pey_A ATP-dependent RNA helic 99.4 2.9E-12 9.8E-17 109.0 11.4 99 143-249 4-104 (395)
88 2oca_A DAR protein, ATP-depend 99.4 3.4E-13 1.1E-17 119.2 5.3 111 3-138 124-234 (510)
89 3fht_A ATP-dependent RNA helic 99.4 3.7E-12 1.3E-16 109.1 11.1 97 143-247 24-122 (412)
90 3fmp_B ATP-dependent RNA helic 99.4 2.5E-12 8.5E-17 112.8 10.0 97 143-247 91-189 (479)
91 1s2m_A Putative ATP-dependent 99.3 4.5E-12 1.5E-16 108.3 10.7 99 144-250 21-119 (400)
92 3eiq_A Eukaryotic initiation f 99.3 7.5E-12 2.6E-16 107.3 11.9 103 139-249 35-137 (414)
93 1fuu_A Yeast initiation factor 99.3 4.4E-12 1.5E-16 108.0 9.4 100 142-249 19-118 (394)
94 4a15_A XPD helicase, ATP-depen 99.3 2.4E-12 8.1E-17 116.0 6.7 73 3-87 18-90 (620)
95 1xti_A Probable ATP-dependent 99.3 1E-11 3.6E-16 105.6 10.1 96 144-247 8-103 (391)
96 1hv8_A Putative ATP-dependent 99.2 2.2E-11 7.6E-16 102.5 9.6 96 144-248 6-102 (367)
97 3sqw_A ATP-dependent RNA helic 99.2 3.4E-11 1.2E-15 108.0 11.0 92 151-246 28-121 (579)
98 2xau_A PRE-mRNA-splicing facto 99.2 3.8E-12 1.3E-16 117.4 3.7 112 4-138 106-217 (773)
99 3h1t_A Type I site-specific re 99.2 2.9E-11 9.8E-16 108.7 8.9 110 7-138 198-311 (590)
100 3i5x_A ATP-dependent RNA helic 99.2 6.2E-11 2.1E-15 105.9 10.7 92 151-246 79-172 (563)
101 2fwr_A DNA repair protein RAD2 99.2 2.1E-11 7.1E-16 106.6 5.1 97 3-138 104-201 (472)
102 2z0m_A 337AA long hypothetical 99.2 2.3E-10 8E-15 95.1 11.1 85 151-249 1-85 (337)
103 2w00_A HSDR, R.ECOR124I; ATP-b 99.1 1E-10 3.5E-15 110.4 8.8 108 7-138 300-410 (1038)
104 1tf5_A Preprotein translocase 99.0 7.3E-10 2.5E-14 101.1 9.2 76 161-250 79-154 (844)
105 2fz4_A DNA repair protein RAD2 99.0 1.7E-10 5.7E-15 91.9 4.4 97 3-138 104-201 (237)
106 2vl7_A XPD; helicase, unknown 99.0 3.5E-10 1.2E-14 100.6 6.0 63 3-85 22-84 (540)
107 3oiy_A Reverse gyrase helicase 99.0 7.7E-10 2.6E-14 95.0 7.8 80 155-245 10-89 (414)
108 3fho_A ATP-dependent RNA helic 99.0 4E-10 1.4E-14 99.5 5.1 100 142-249 117-218 (508)
109 2zj8_A DNA helicase, putative 98.9 2E-09 6.8E-14 98.9 9.3 91 145-245 2-93 (720)
110 2va8_A SSO2462, SKI2-type heli 98.9 4E-09 1.4E-13 96.9 11.0 92 144-245 8-100 (715)
111 1oyw_A RECQ helicase, ATP-depe 98.9 1.6E-09 5.4E-14 95.9 7.9 86 144-243 2-88 (523)
112 2v1x_A ATP-dependent DNA helic 98.9 3.9E-09 1.3E-13 94.6 10.4 83 147-243 24-107 (591)
113 2fsf_A Preprotein translocase 98.8 8.2E-09 2.8E-13 94.2 8.6 73 165-250 73-145 (853)
114 1gku_B Reverse gyrase, TOP-RG; 98.8 1.1E-08 3.9E-13 97.3 9.6 76 161-249 53-128 (1054)
115 1nkt_A Preprotein translocase 98.8 1.8E-08 6.1E-13 92.3 9.8 75 162-250 108-182 (922)
116 3tbk_A RIG-I helicase domain; 98.8 2.3E-08 7.8E-13 88.6 10.2 79 166-250 4-82 (555)
117 2ykg_A Probable ATP-dependent 98.8 1.9E-08 6.6E-13 91.9 9.3 87 157-249 4-90 (696)
118 4a2p_A RIG-I, retinoic acid in 98.8 2.7E-08 9.2E-13 88.3 9.8 79 165-249 6-84 (556)
119 2p6r_A Afuhel308 helicase; pro 98.8 2.1E-09 7.2E-14 98.5 2.6 89 145-244 2-92 (702)
120 2ipc_A Preprotein translocase 98.7 2.1E-08 7.1E-13 91.9 8.2 75 162-250 76-150 (997)
121 4a2q_A RIG-I, retinoic acid in 98.7 5.7E-08 2E-12 90.2 10.0 83 161-249 243-325 (797)
122 4ddu_A Reverse gyrase; topoiso 98.7 3.4E-08 1.2E-12 94.3 8.2 71 162-244 75-145 (1104)
123 1gm5_A RECG; helicase, replica 98.6 9.6E-08 3.3E-12 88.0 9.9 86 153-250 356-447 (780)
124 3l9o_A ATP-dependent RNA helic 98.6 2E-08 7E-13 95.9 4.5 92 145-247 163-254 (1108)
125 3b6e_A Interferon-induced heli 98.6 1E-07 3.5E-12 74.1 7.5 79 163-246 30-109 (216)
126 4a2w_A RIG-I, retinoic acid in 98.5 2.2E-07 7.4E-12 87.7 8.6 82 163-250 245-326 (936)
127 2jlq_A Serine protease subunit 98.5 5.6E-08 1.9E-12 84.5 4.2 68 163-241 1-69 (451)
128 3jux_A Protein translocase sub 98.5 2.7E-07 9.1E-12 83.2 8.1 65 5-84 88-152 (822)
129 2whx_A Serine protease/ntpase/ 98.5 6.4E-08 2.2E-12 87.2 3.7 82 149-241 155-236 (618)
130 2wv9_A Flavivirin protease NS2 98.4 8E-08 2.7E-12 87.2 2.1 68 166-243 215-293 (673)
131 4gl2_A Interferon-induced heli 98.3 4.2E-07 1.4E-11 83.1 5.4 76 166-246 7-83 (699)
132 4a15_A XPD helicase, ATP-depen 98.3 2.1E-06 7.1E-11 77.4 9.4 75 166-250 3-81 (620)
133 2eyq_A TRCF, transcription-rep 98.3 3.8E-06 1.3E-10 80.7 11.1 75 163-249 601-681 (1151)
134 1z63_A Helicase of the SNF2/RA 98.3 9.5E-07 3.2E-11 77.6 6.4 105 5-138 54-158 (500)
135 2xgj_A ATP-dependent RNA helic 98.3 2.1E-06 7.3E-11 81.3 9.1 72 162-245 83-154 (1010)
136 1rif_A DAR protein, DNA helica 98.3 2.2E-06 7.4E-11 69.7 7.6 70 166-245 113-182 (282)
137 2oca_A DAR protein, ATP-depend 98.2 2.9E-06 9.8E-11 74.7 7.3 70 166-245 113-182 (510)
138 3dmq_A RNA polymerase-associat 98.1 1.1E-06 3.8E-11 83.1 4.0 110 7-138 170-282 (968)
139 3crv_A XPD/RAD3 related DNA he 98.1 1.8E-06 6.1E-11 76.9 5.0 70 166-249 3-76 (551)
140 1yks_A Genome polyprotein [con 98.1 1.8E-06 6.1E-11 74.7 4.7 56 177-242 4-59 (440)
141 4a4z_A Antiviral helicase SKI2 98.1 2.9E-06 9.9E-11 80.4 6.4 68 166-244 39-106 (997)
142 3llm_A ATP-dependent RNA helic 98.1 9.8E-06 3.4E-10 63.9 8.3 71 165-241 60-130 (235)
143 1w36_D RECD, exodeoxyribonucle 98.1 2E-06 7E-11 77.3 4.6 63 3-74 160-224 (608)
144 1wp9_A ATP-dependent RNA helic 98.1 1.2E-05 4E-10 69.6 9.0 68 166-244 9-76 (494)
145 2z83_A Helicase/nucleoside tri 98.1 2.9E-06 9.9E-11 73.8 4.9 56 176-241 16-71 (459)
146 2fwr_A DNA repair protein RAD2 98.0 8.6E-06 3E-10 70.9 6.6 64 166-243 93-156 (472)
147 2xau_A PRE-mRNA-splicing facto 98.0 2.5E-05 8.7E-10 72.1 9.4 90 143-241 71-161 (773)
148 2vl7_A XPD; helicase, unknown 98.0 1.1E-05 3.8E-10 71.6 6.8 64 166-243 7-74 (540)
149 2v6i_A RNA helicase; membrane, 97.9 7.2E-06 2.5E-10 70.7 5.0 51 181-241 2-52 (431)
150 2fz4_A DNA repair protein RAD2 97.9 3E-05 1E-09 61.3 7.0 65 165-243 92-156 (237)
151 3o8b_A HCV NS3 protease/helica 97.7 1.7E-05 6E-10 71.5 3.4 59 170-242 221-279 (666)
152 3mwy_W Chromo domain-containin 97.5 0.0002 6.9E-09 66.5 7.3 71 5-88 253-323 (800)
153 3jux_A Protein translocase sub 97.3 0.0013 4.6E-08 59.6 10.4 73 165-250 74-146 (822)
154 3h1t_A Type I site-specific re 97.3 7.8E-05 2.7E-09 66.8 2.6 77 166-244 178-260 (590)
155 1z3i_X Similar to RAD54-like; 97.2 0.00092 3.2E-08 60.5 8.3 74 5-86 77-150 (644)
156 2w00_A HSDR, R.ECOR124I; ATP-b 97.2 0.00024 8.3E-09 67.4 4.1 71 166-245 271-355 (1038)
157 3rc3_A ATP-dependent RNA helic 97.1 0.00048 1.6E-08 62.6 5.3 57 173-244 147-203 (677)
158 1w36_D RECD, exodeoxyribonucle 97.0 0.0013 4.3E-08 59.2 7.2 73 168-249 151-225 (608)
159 1z63_A Helicase of the SNF2/RA 96.3 0.0059 2E-07 53.3 6.0 73 166-248 37-113 (500)
160 3lfu_A DNA helicase II; SF1 he 96.2 0.0092 3.1E-07 53.8 6.9 57 7-70 22-78 (647)
161 4b3f_X DNA-binding protein smu 95.6 0.023 8E-07 51.3 6.8 52 6-68 203-255 (646)
162 2xzl_A ATP-dependent helicase 95.3 0.035 1.2E-06 51.5 7.1 55 5-69 373-427 (802)
163 2gk6_A Regulator of nonsense t 95.2 0.029 1E-06 50.5 6.2 54 5-68 193-246 (624)
164 3dmq_A RNA polymerase-associat 95.2 0.034 1.2E-06 52.7 6.7 67 166-242 153-221 (968)
165 1pjr_A PCRA; DNA repair, DNA r 95.1 0.043 1.5E-06 50.3 7.1 57 7-70 24-80 (724)
166 1uaa_A REP helicase, protein ( 95.0 0.044 1.5E-06 49.7 6.8 57 7-70 15-71 (673)
167 3u4q_A ATP-dependent helicase/ 94.7 0.047 1.6E-06 53.1 6.5 58 6-68 22-79 (1232)
168 2wjy_A Regulator of nonsense t 94.6 0.054 1.8E-06 50.2 6.3 54 5-68 369-422 (800)
169 1c4o_A DNA nucleotide excision 94.5 0.074 2.5E-06 48.2 6.9 48 9-70 30-77 (664)
170 3upu_A ATP-dependent DNA helic 94.2 0.087 3E-06 45.5 6.5 48 9-66 47-94 (459)
171 3e1s_A Exodeoxyribonuclease V, 94.0 0.1 3.6E-06 46.4 6.7 50 4-64 201-250 (574)
172 3vkw_A Replicase large subunit 93.7 0.057 2E-06 46.3 4.2 42 10-67 164-205 (446)
173 3mwy_W Chromo domain-containin 93.3 0.14 4.9E-06 47.4 6.6 74 166-248 236-313 (800)
174 1e9r_A Conjugal transfer prote 93.3 0.1 3.5E-06 44.6 5.3 45 5-60 51-95 (437)
175 2p6n_A ATP-dependent RNA helic 93.3 0.16 5.5E-06 38.2 5.8 24 220-243 54-77 (191)
176 3ec2_A DNA replication protein 92.0 0.2 6.8E-06 37.0 4.7 19 5-23 36-54 (180)
177 1z3i_X Similar to RAD54-like; 91.6 0.67 2.3E-05 41.8 8.5 76 166-246 55-139 (644)
178 2dr3_A UPF0273 protein PH0284; 91.6 0.2 7E-06 38.7 4.6 19 4-22 20-38 (247)
179 3n70_A Transport activator; si 91.2 0.12 4.1E-06 36.9 2.6 19 5-23 22-40 (145)
180 2d7d_A Uvrabc system protein B 91.1 0.47 1.6E-05 42.9 7.0 48 9-70 34-81 (661)
181 3co5_A Putative two-component 90.7 0.11 3.7E-06 37.0 2.0 18 5-22 25-42 (143)
182 3lfu_A DNA helicase II; SF1 he 90.5 0.85 2.9E-05 40.9 8.1 70 166-244 9-78 (647)
183 2xzl_A ATP-dependent helicase 90.3 1.2 4E-05 41.3 9.0 68 166-243 360-427 (802)
184 2zts_A Putative uncharacterize 90.2 0.37 1.3E-05 37.3 4.9 23 6-29 29-51 (251)
185 3cpe_A Terminase, DNA packagin 90.0 0.88 3E-05 40.6 7.6 59 7-74 178-236 (592)
186 1t5i_A C_terminal domain of A 90.0 0.76 2.6E-05 33.7 6.2 24 220-243 31-54 (172)
187 2hjv_A ATP-dependent RNA helic 89.6 0.7 2.4E-05 33.5 5.7 24 220-243 35-58 (163)
188 2gk6_A Regulator of nonsense t 89.5 1.1 3.7E-05 40.2 8.0 68 166-243 180-247 (624)
189 2o0j_A Terminase, DNA packagin 89.5 1.8 6E-05 36.4 8.7 74 166-248 163-236 (385)
190 2o0j_A Terminase, DNA packagin 89.2 1.3 4.4E-05 37.3 7.7 58 8-74 179-236 (385)
191 4b3f_X DNA-binding protein smu 88.8 1.4 4.7E-05 39.7 8.1 66 167-243 190-256 (646)
192 3bh0_A DNAB-like replicative h 88.7 1.2 4.2E-05 36.2 7.1 39 4-53 65-103 (315)
193 2w58_A DNAI, primosome compone 88.5 0.68 2.3E-05 34.6 5.2 16 8-23 55-70 (202)
194 3u4q_A ATP-dependent helicase/ 88.2 1.4 4.7E-05 43.0 8.1 70 166-242 10-79 (1232)
195 3iij_A Coilin-interacting nucl 88.1 0.31 1.1E-05 35.8 2.9 20 3-22 7-26 (180)
196 3te6_A Regulatory protein SIR3 88.1 0.21 7.3E-06 40.9 2.1 27 6-33 44-70 (318)
197 1fuk_A Eukaryotic initiation f 88.0 1.1 3.7E-05 32.4 5.8 24 220-243 30-53 (165)
198 2rb4_A ATP-dependent RNA helic 87.9 0.74 2.5E-05 33.7 4.9 24 220-243 34-57 (175)
199 2oap_1 GSPE-2, type II secreti 87.8 0.22 7.4E-06 43.7 2.1 20 4-23 257-276 (511)
200 2w0m_A SSO2452; RECA, SSPF, un 87.5 0.8 2.7E-05 34.8 5.0 19 4-22 20-38 (235)
201 2jgn_A DBX, DDX3, ATP-dependen 87.3 1.1 3.8E-05 33.3 5.6 24 220-243 46-69 (185)
202 1jbk_A CLPB protein; beta barr 87.3 0.28 9.7E-06 35.9 2.2 17 7-23 43-59 (195)
203 1uaa_A REP helicase, protein ( 87.1 1.7 5.8E-05 39.3 7.7 69 167-244 3-71 (673)
204 3eaq_A Heat resistant RNA depe 87.1 1.4 4.9E-05 33.4 6.2 25 220-244 31-55 (212)
205 3cpe_A Terminase, DNA packagin 86.8 2.7 9.2E-05 37.4 8.7 73 167-248 164-236 (592)
206 2eyu_A Twitching motility prot 86.8 0.32 1.1E-05 38.6 2.4 20 4-23 22-41 (261)
207 2wjy_A Regulator of nonsense t 86.8 2 6.9E-05 39.8 8.0 68 166-243 356-423 (800)
208 4a1f_A DNAB helicase, replicat 86.5 1.7 5.7E-05 35.9 6.6 38 5-53 44-81 (338)
209 1kgd_A CASK, peripheral plasma 86.1 0.4 1.4E-05 35.4 2.5 19 5-23 3-21 (180)
210 1c4o_A DNA nucleotide excision 86.1 1.5 5.2E-05 39.7 6.7 66 166-245 8-78 (664)
211 2p65_A Hypothetical protein PF 85.9 0.28 9.4E-06 35.9 1.5 16 7-22 43-58 (187)
212 3bgw_A DNAB-like replicative h 85.9 1.1 3.8E-05 38.4 5.5 39 4-53 194-232 (444)
213 3bos_A Putative DNA replicatio 85.9 0.36 1.2E-05 37.0 2.3 17 6-22 51-67 (242)
214 2r6a_A DNAB helicase, replicat 85.9 0.96 3.3E-05 38.8 5.1 30 4-34 200-229 (454)
215 1pjr_A PCRA; DNA repair, DNA r 85.8 2.5 8.7E-05 38.6 8.1 70 166-244 11-80 (724)
216 2q6t_A DNAB replication FORK h 85.8 0.95 3.2E-05 38.8 5.0 30 4-34 197-226 (444)
217 2gza_A Type IV secretion syste 85.5 0.38 1.3E-05 40.1 2.4 20 4-23 172-191 (361)
218 1f9v_A Kinesin-like protein KA 85.3 0.39 1.3E-05 39.8 2.2 23 2-24 78-102 (347)
219 2bjv_A PSP operon transcriptio 85.2 0.46 1.6E-05 37.4 2.6 18 5-22 27-44 (265)
220 3e1s_A Exodeoxyribonuclease V, 85.2 3 0.0001 37.0 8.1 64 166-240 189-252 (574)
221 3syl_A Protein CBBX; photosynt 85.1 0.48 1.7E-05 38.1 2.7 18 6-23 66-83 (309)
222 4ag6_A VIRB4 ATPase, type IV s 85.1 0.86 2.9E-05 38.2 4.3 42 6-58 34-75 (392)
223 3upu_A ATP-dependent DNA helic 84.8 2.7 9.4E-05 36.0 7.5 71 160-240 19-94 (459)
224 1cr0_A DNA primase/helicase; R 84.8 1.2 4.2E-05 35.6 5.0 26 4-30 32-57 (296)
225 2qmh_A HPR kinase/phosphorylas 84.7 0.44 1.5E-05 36.2 2.1 16 6-21 33-48 (205)
226 1lvg_A Guanylate kinase, GMP k 84.6 0.49 1.7E-05 35.6 2.4 19 6-24 3-21 (198)
227 1ex7_A Guanylate kinase; subst 84.6 0.41 1.4E-05 35.9 1.9 15 8-22 2-16 (186)
228 2ius_A DNA translocase FTSK; n 84.4 1.5 5E-05 38.4 5.6 19 5-23 165-183 (512)
229 3vaa_A Shikimate kinase, SK; s 84.3 0.45 1.5E-05 35.7 2.1 19 5-23 23-41 (199)
230 2qor_A Guanylate kinase; phosp 84.3 0.54 1.8E-05 35.5 2.5 19 4-22 9-27 (204)
231 2pt7_A CAG-ALFA; ATPase, prote 84.2 0.42 1.4E-05 39.3 2.0 18 5-22 169-186 (330)
232 3ney_A 55 kDa erythrocyte memb 84.1 0.49 1.7E-05 35.8 2.1 19 4-22 16-34 (197)
233 3cf0_A Transitional endoplasmi 84.0 0.51 1.7E-05 38.1 2.4 19 5-23 47-65 (301)
234 3nwn_A Kinesin-like protein KI 83.8 0.44 1.5E-05 39.7 2.0 22 3-24 99-122 (359)
235 1nlf_A Regulatory protein REPA 83.8 3.1 0.00011 32.9 7.0 19 4-22 27-45 (279)
236 3h4m_A Proteasome-activating n 83.8 0.53 1.8E-05 37.4 2.4 19 5-23 49-67 (285)
237 3t0q_A AGR253WP; kinesin, alph 83.7 0.41 1.4E-05 39.7 1.7 22 3-24 80-103 (349)
238 1w36_B RECB, exodeoxyribonucle 83.6 1.9 6.6E-05 41.8 6.5 63 5-68 15-78 (1180)
239 3hjh_A Transcription-repair-co 83.5 3.1 0.00011 36.1 7.2 52 5-70 12-63 (483)
240 2qz4_A Paraplegin; AAA+, SPG7, 83.4 0.59 2E-05 36.5 2.5 18 6-23 38-55 (262)
241 2j41_A Guanylate kinase; GMP, 83.3 0.55 1.9E-05 35.2 2.2 20 4-23 3-22 (207)
242 1xp8_A RECA protein, recombina 83.3 1.4 4.7E-05 36.8 4.8 28 5-33 72-99 (366)
243 1tue_A Replication protein E1; 83.2 0.74 2.5E-05 35.1 2.8 24 8-32 59-82 (212)
244 2ewv_A Twitching motility prot 83.1 0.56 1.9E-05 39.2 2.3 19 5-23 134-152 (372)
245 1bg2_A Kinesin; motor protein, 83.0 0.53 1.8E-05 38.6 2.1 22 3-24 72-95 (325)
246 2qgz_A Helicase loader, putati 83.0 0.55 1.9E-05 38.2 2.2 17 7-23 152-168 (308)
247 1ofh_A ATP-dependent HSL prote 82.9 0.63 2.2E-05 37.3 2.5 18 6-23 49-66 (310)
248 2orw_A Thymidine kinase; TMTK, 82.9 2 6.8E-05 31.9 5.1 40 6-56 2-41 (184)
249 1goj_A Kinesin, kinesin heavy 82.7 0.62 2.1E-05 38.7 2.4 22 3-24 75-98 (355)
250 3a8t_A Adenylate isopentenyltr 82.6 0.46 1.6E-05 39.2 1.5 20 225-244 271-290 (339)
251 1u94_A RECA protein, recombina 82.5 1.6 5.5E-05 36.2 4.9 27 5-32 61-87 (356)
252 3hws_A ATP-dependent CLP prote 82.5 0.68 2.3E-05 38.4 2.6 18 6-23 50-67 (363)
253 1zp6_A Hypothetical protein AT 82.5 0.56 1.9E-05 34.7 1.9 20 3-22 5-24 (191)
254 3uk6_A RUVB-like 2; hexameric 82.5 0.56 1.9E-05 38.8 2.1 17 7-23 70-86 (368)
255 3b9p_A CG5977-PA, isoform A; A 82.3 0.57 2E-05 37.5 2.1 18 6-23 53-70 (297)
256 3lre_A Kinesin-like protein KI 82.3 0.64 2.2E-05 38.6 2.4 22 3-24 100-123 (355)
257 2r44_A Uncharacterized protein 82.2 0.46 1.6E-05 38.8 1.4 18 5-22 44-61 (331)
258 2h58_A Kinesin-like protein KI 82.2 0.59 2E-05 38.5 2.1 21 4-24 76-98 (330)
259 4a14_A Kinesin, kinesin-like p 82.1 0.37 1.3E-05 39.9 0.8 22 3-24 78-101 (344)
260 2vvg_A Kinesin-2; motor protei 82.0 0.6 2E-05 38.7 2.1 21 4-24 85-107 (350)
261 2chg_A Replication factor C sm 82.0 0.75 2.6E-05 34.5 2.5 15 8-22 39-53 (226)
262 1z6g_A Guanylate kinase; struc 82.0 0.79 2.7E-05 35.0 2.7 20 4-23 20-39 (218)
263 3d3q_A TRNA delta(2)-isopenten 82.0 0.88 3E-05 37.6 3.0 14 9-22 9-22 (340)
264 2kjq_A DNAA-related protein; s 81.9 0.66 2.3E-05 33.2 2.1 17 6-22 35-51 (149)
265 2rep_A Kinesin-like protein KI 81.9 0.5 1.7E-05 39.6 1.5 22 3-24 110-133 (376)
266 4gp7_A Metallophosphoesterase; 81.8 0.57 1.9E-05 34.3 1.7 22 5-26 7-28 (171)
267 2b8t_A Thymidine kinase; deoxy 81.8 1.7 5.9E-05 33.4 4.5 40 6-56 11-50 (223)
268 2y65_A Kinesin, kinesin heavy 81.8 0.62 2.1E-05 38.9 2.1 22 3-24 79-102 (365)
269 2iut_A DNA translocase FTSK; n 81.8 2 6.9E-05 38.0 5.4 27 6-33 213-239 (574)
270 3bfn_A Kinesin-like protein KI 81.8 0.69 2.4E-05 38.9 2.4 22 3-24 93-116 (388)
271 3trf_A Shikimate kinase, SK; a 81.7 0.65 2.2E-05 34.2 2.0 16 7-22 5-20 (185)
272 3b6u_A Kinesin-like protein KI 81.7 0.6 2.1E-05 39.0 2.0 22 3-24 96-119 (372)
273 3jvv_A Twitching mobility prot 81.7 0.55 1.9E-05 39.1 1.7 18 6-23 122-139 (356)
274 4etp_A Kinesin-like protein KA 81.6 0.69 2.4E-05 39.1 2.3 22 3-24 135-158 (403)
275 1qhx_A CPT, protein (chloramph 81.6 0.77 2.6E-05 33.5 2.4 17 6-22 2-18 (178)
276 2zfi_A Kinesin-like protein KI 81.5 0.64 2.2E-05 38.8 2.1 21 4-24 85-107 (366)
277 3tau_A Guanylate kinase, GMP k 81.5 0.77 2.6E-05 34.8 2.4 18 6-23 7-24 (208)
278 2zr9_A Protein RECA, recombina 81.3 1.8 6.3E-05 35.8 4.8 27 5-32 59-85 (349)
279 1xx6_A Thymidine kinase; NESG, 81.2 2 6.9E-05 32.2 4.6 40 6-56 7-46 (191)
280 1ojl_A Transcriptional regulat 81.2 0.76 2.6E-05 37.2 2.4 19 5-23 23-41 (304)
281 3exa_A TRNA delta(2)-isopenten 81.0 0.59 2E-05 38.2 1.6 15 8-22 4-18 (322)
282 3u06_A Protein claret segregat 80.8 0.69 2.4E-05 39.3 2.1 22 3-24 133-156 (412)
283 1t5c_A CENP-E protein, centrom 80.8 0.71 2.4E-05 38.3 2.1 21 4-24 73-95 (349)
284 3foz_A TRNA delta(2)-isopenten 80.8 0.61 2.1E-05 38.0 1.6 13 10-22 13-25 (316)
285 1y63_A LMAJ004144AAA protein; 80.6 0.84 2.9E-05 33.7 2.3 18 5-22 8-25 (184)
286 3i32_A Heat resistant RNA depe 80.5 3.1 0.00011 33.6 5.8 25 220-244 28-52 (300)
287 3gbj_A KIF13B protein; kinesin 80.4 0.7 2.4E-05 38.4 2.0 22 3-24 87-110 (354)
288 1d2n_A N-ethylmaleimide-sensit 80.4 0.61 2.1E-05 36.9 1.5 17 7-23 64-80 (272)
289 2z43_A DNA repair and recombin 80.2 2.1 7.2E-05 34.9 4.8 18 5-22 105-122 (324)
290 1znw_A Guanylate kinase, GMP k 80.2 0.91 3.1E-05 34.3 2.4 21 4-24 17-37 (207)
291 1kag_A SKI, shikimate kinase I 80.2 0.86 2.9E-05 33.0 2.2 16 7-22 4-19 (173)
292 2nr8_A Kinesin-like protein KI 80.2 0.73 2.5E-05 38.3 2.0 22 3-24 98-121 (358)
293 1l8q_A Chromosomal replication 80.2 0.88 3E-05 37.0 2.5 18 6-23 36-53 (324)
294 3tr0_A Guanylate kinase, GMP k 80.1 0.94 3.2E-05 33.8 2.5 19 5-23 5-23 (205)
295 1lv7_A FTSH; alpha/beta domain 79.9 0.82 2.8E-05 35.7 2.1 17 7-23 45-61 (257)
296 3eie_A Vacuolar protein sortin 79.9 0.8 2.7E-05 37.3 2.1 17 7-23 51-67 (322)
297 1p9r_A General secretion pathw 79.7 0.73 2.5E-05 39.2 1.9 18 6-23 166-183 (418)
298 3hr8_A Protein RECA; alpha and 79.6 2 6.8E-05 35.7 4.5 27 6-33 60-86 (356)
299 3t15_A Ribulose bisphosphate c 79.6 0.95 3.3E-05 36.4 2.5 16 7-22 36-51 (293)
300 1q57_A DNA primase/helicase; d 79.6 1.7 5.8E-05 37.8 4.2 28 4-32 239-266 (503)
301 2v1u_A Cell division control p 79.3 0.84 2.9E-05 37.7 2.1 18 6-23 43-60 (387)
302 2owm_A Nckin3-434, related to 79.2 0.83 2.9E-05 39.1 2.1 21 4-24 132-154 (443)
303 3a00_A Guanylate kinase, GMP k 78.9 1.1 3.8E-05 33.1 2.5 17 7-23 1-17 (186)
304 1kht_A Adenylate kinase; phosp 78.9 0.9 3.1E-05 33.4 2.0 17 6-22 2-18 (192)
305 3eph_A TRNA isopentenyltransfe 78.9 1.3 4.6E-05 37.4 3.2 21 10-31 5-25 (409)
306 1xwi_A SKD1 protein; VPS4B, AA 78.8 0.88 3E-05 37.1 2.1 17 7-23 45-61 (322)
307 3lw7_A Adenylate kinase relate 78.6 0.87 3E-05 32.8 1.8 14 9-22 3-16 (179)
308 3nbx_X ATPase RAVA; AAA+ ATPas 78.6 0.67 2.3E-05 40.5 1.3 19 4-22 38-56 (500)
309 1s96_A Guanylate kinase, GMP k 78.6 1.1 3.7E-05 34.4 2.4 21 4-24 13-33 (219)
310 1xjc_A MOBB protein homolog; s 78.3 2.2 7.4E-05 31.3 3.9 22 10-32 7-28 (169)
311 4eun_A Thermoresistant glucoki 78.3 1.1 3.9E-05 33.5 2.4 18 6-23 28-45 (200)
312 1um8_A ATP-dependent CLP prote 78.2 1.1 3.9E-05 37.2 2.6 18 6-23 71-88 (376)
313 2ze6_A Isopentenyl transferase 78.1 0.9 3.1E-05 35.7 1.8 13 10-22 4-16 (253)
314 2c9o_A RUVB-like 1; hexameric 78.0 0.97 3.3E-05 38.8 2.2 18 6-23 62-79 (456)
315 2qt1_A Nicotinamide riboside k 77.6 1.1 3.9E-05 33.6 2.2 21 2-22 16-36 (207)
316 3tif_A Uncharacterized ABC tra 77.6 1.2 4.2E-05 34.5 2.4 19 4-22 28-46 (235)
317 1np6_A Molybdopterin-guanine d 77.4 1.9 6.4E-05 31.8 3.3 22 10-32 9-30 (174)
318 2qp9_X Vacuolar protein sortin 77.2 1.2 4E-05 36.9 2.4 17 7-23 84-100 (355)
319 1hqc_A RUVB; extended AAA-ATPa 77.1 0.94 3.2E-05 36.6 1.7 17 7-23 38-54 (324)
320 3pfi_A Holliday junction ATP-d 76.9 1.3 4.4E-05 36.1 2.5 16 8-23 56-71 (338)
321 2ehv_A Hypothetical protein PH 76.8 1.4 4.7E-05 34.0 2.6 21 4-24 27-47 (251)
322 2r62_A Cell division protease 76.6 0.74 2.5E-05 36.2 1.0 17 7-23 44-60 (268)
323 3lnc_A Guanylate kinase, GMP k 76.5 0.97 3.3E-05 34.7 1.6 20 4-23 24-43 (231)
324 1knq_A Gluconate kinase; ALFA/ 76.4 1.1 3.8E-05 32.6 1.8 18 6-23 7-24 (175)
325 2i1q_A DNA repair and recombin 76.4 3.2 0.00011 33.6 4.8 18 5-22 96-113 (322)
326 3d8b_A Fidgetin-like protein 1 76.3 1.2 4.2E-05 36.8 2.3 18 6-23 116-133 (357)
327 1ry6_A Internal kinesin; kines 76.3 1.3 4.3E-05 36.9 2.3 19 6-24 82-102 (360)
328 3vfd_A Spastin; ATPase, microt 76.1 1.2 4E-05 37.3 2.1 17 7-23 148-164 (389)
329 3dc4_A Kinesin-like protein NO 76.0 1.2 4E-05 36.9 2.0 21 4-24 90-112 (344)
330 4b4t_J 26S protease regulatory 75.9 1.3 4.3E-05 37.5 2.2 17 7-23 182-198 (405)
331 4b4t_M 26S protease regulatory 75.9 1.2 4E-05 38.1 2.0 17 7-23 215-231 (434)
332 3tqf_A HPR(Ser) kinase; transf 75.6 1.4 4.7E-05 32.7 2.1 17 5-21 14-30 (181)
333 3crm_A TRNA delta(2)-isopenten 75.4 1.1 3.7E-05 36.7 1.6 15 8-22 6-20 (323)
334 1ly1_A Polynucleotide kinase; 75.1 1.3 4.3E-05 32.2 1.8 14 9-22 4-17 (181)
335 1g8p_A Magnesium-chelatase 38 75.0 0.8 2.7E-05 37.4 0.8 18 6-23 44-61 (350)
336 3kb2_A SPBC2 prophage-derived 75.0 1.4 4.6E-05 31.8 2.0 14 9-22 3-16 (173)
337 1ixz_A ATP-dependent metallopr 74.9 1.5 5E-05 34.2 2.2 15 9-23 51-65 (254)
338 1sxj_D Activator 1 41 kDa subu 74.6 1.7 5.7E-05 35.5 2.7 16 8-23 59-74 (353)
339 1v8k_A Kinesin-like protein KI 74.4 1.5 5E-05 37.2 2.2 21 4-24 150-172 (410)
340 2v54_A DTMP kinase, thymidylat 74.3 1.6 5.5E-05 32.5 2.3 18 5-22 2-19 (204)
341 3cob_A Kinesin heavy chain-lik 74.0 1.4 4.6E-05 36.9 1.9 21 4-24 75-97 (369)
342 1x88_A Kinesin-like protein KI 73.8 1.4 4.7E-05 36.7 1.9 21 4-24 84-106 (359)
343 2cvh_A DNA repair and recombin 73.7 2.1 7.3E-05 32.1 2.9 19 4-22 17-35 (220)
344 1njg_A DNA polymerase III subu 73.7 1.6 5.3E-05 33.1 2.1 15 9-23 47-61 (250)
345 4b4t_K 26S protease regulatory 73.6 1.5 5.1E-05 37.4 2.1 17 7-23 206-222 (428)
346 3cm0_A Adenylate kinase; ATP-b 73.6 1 3.6E-05 33.0 1.1 17 6-22 3-19 (186)
347 2wbe_C Bipolar kinesin KRP-130 73.2 1.5 5.2E-05 36.6 2.0 21 4-24 96-118 (373)
348 4fcw_A Chaperone protein CLPB; 73.2 1.4 4.8E-05 35.3 1.8 16 8-23 48-63 (311)
349 2cbz_A Multidrug resistance-as 73.1 2.1 7.3E-05 33.2 2.8 20 4-23 28-47 (237)
350 2yjt_D ATP-dependent RNA helic 75.4 0.71 2.4E-05 33.7 0.0 25 220-244 30-54 (170)
351 4b4t_L 26S protease subunit RP 73.1 1.5 5.2E-05 37.5 2.0 17 7-23 215-231 (437)
352 2heh_A KIF2C protein; kinesin, 72.9 1.5 5.3E-05 36.8 2.0 21 4-24 130-152 (387)
353 3nwj_A ATSK2; P loop, shikimat 72.9 1.8 6.3E-05 33.9 2.4 19 5-23 46-64 (250)
354 2qby_A CDC6 homolog 1, cell di 72.6 1.8 6.2E-05 35.6 2.4 17 7-23 45-61 (386)
355 3uie_A Adenylyl-sulfate kinase 72.5 1.6 5.6E-05 32.6 1.9 18 6-23 24-41 (200)
356 3hu3_A Transitional endoplasmi 72.5 1.9 6.3E-05 37.5 2.5 19 5-23 236-254 (489)
357 3c8u_A Fructokinase; YP_612366 72.2 1.5 5.1E-05 33.1 1.7 17 6-22 21-37 (208)
358 1sgw_A Putative ABC transporte 72.0 2.4 8.3E-05 32.3 2.8 20 4-23 32-51 (214)
359 1fnn_A CDC6P, cell division co 72.0 1.7 6E-05 35.8 2.2 15 9-23 46-60 (389)
360 1ye8_A Protein THEP1, hypothet 71.8 2.2 7.7E-05 31.4 2.5 15 9-23 2-16 (178)
361 2rhm_A Putative kinase; P-loop 71.5 1.7 6E-05 31.9 1.9 17 6-22 4-20 (193)
362 2qby_B CDC6 homolog 3, cell di 71.5 1.8 6.3E-05 35.7 2.2 17 7-23 45-61 (384)
363 1iy2_A ATP-dependent metallopr 71.4 2 6.8E-05 34.0 2.3 15 9-23 75-89 (278)
364 3u4q_B ATP-dependent helicase/ 71.4 4 0.00014 39.5 4.8 38 11-56 5-42 (1166)
365 4a74_A DNA repair and recombin 71.4 1.8 6.2E-05 32.8 2.0 19 5-23 23-41 (231)
366 2zan_A Vacuolar protein sortin 71.3 1.8 6.2E-05 37.0 2.1 17 7-23 167-183 (444)
367 2ghi_A Transport protein; mult 71.3 2.5 8.4E-05 33.3 2.8 20 4-23 43-62 (260)
368 2ff7_A Alpha-hemolysin translo 71.3 2.3 7.9E-05 33.2 2.6 20 4-23 32-51 (247)
369 2x8a_A Nuclear valosin-contain 71.2 1.9 6.5E-05 34.3 2.1 15 9-23 46-60 (274)
370 1n0w_A DNA repair protein RAD5 71.1 2.3 7.8E-05 32.5 2.5 20 4-23 21-40 (243)
371 2pze_A Cystic fibrosis transme 71.1 2.4 8.1E-05 32.7 2.6 20 4-23 31-50 (229)
372 2hjv_A ATP-dependent RNA helic 71.1 9.1 0.00031 27.3 5.7 45 46-96 35-79 (163)
373 2bdt_A BH3686; alpha-beta prot 71.1 1.4 4.9E-05 32.4 1.3 16 8-23 3-18 (189)
374 3nh6_A ATP-binding cassette SU 71.0 2.3 7.9E-05 34.5 2.6 20 4-23 77-96 (306)
375 1b0u_A Histidine permease; ABC 71.0 2.2 7.5E-05 33.7 2.4 20 4-23 29-48 (262)
376 2pcj_A ABC transporter, lipopr 70.8 2 6.9E-05 33.0 2.1 19 4-22 27-45 (224)
377 2v9p_A Replication protein E1; 70.8 2.6 8.8E-05 34.2 2.8 19 4-22 123-141 (305)
378 4g1u_C Hemin import ATP-bindin 70.7 2.1 7.1E-05 33.9 2.2 20 4-23 34-53 (266)
379 2i3b_A HCR-ntpase, human cance 70.6 2.8 9.6E-05 31.2 2.8 18 7-24 1-18 (189)
380 1ji0_A ABC transporter; ATP bi 70.6 2.1 7.3E-05 33.2 2.3 20 4-23 29-48 (240)
381 1g6h_A High-affinity branched- 70.4 2.2 7.4E-05 33.6 2.3 20 4-23 30-49 (257)
382 2pez_A Bifunctional 3'-phospho 70.3 1.9 6.4E-05 31.5 1.8 17 6-22 4-20 (179)
383 3asz_A Uridine kinase; cytidin 70.3 1.9 6.4E-05 32.4 1.8 18 6-23 5-22 (211)
384 1g41_A Heat shock protein HSLU 70.3 2.4 8.1E-05 36.4 2.6 18 6-23 49-66 (444)
385 2r2a_A Uncharacterized protein 70.3 1.9 6.5E-05 32.5 1.8 14 10-23 8-21 (199)
386 3io5_A Recombination and repai 70.2 6.9 0.00023 32.0 5.2 43 6-58 28-70 (333)
387 3qf7_A RAD50; ABC-ATPase, ATPa 69.9 2.1 7E-05 35.6 2.1 16 9-24 25-40 (365)
388 3kta_A Chromosome segregation 69.9 2.1 7.3E-05 31.2 2.0 15 9-23 28-42 (182)
389 4h1g_A Maltose binding protein 69.8 1.2 4.2E-05 40.6 0.8 22 3-24 457-480 (715)
390 3t61_A Gluconokinase; PSI-biol 69.8 2.1 7.2E-05 31.9 2.0 15 8-22 19-33 (202)
391 4b4t_H 26S protease regulatory 69.7 1.7 5.7E-05 37.4 1.5 17 7-23 243-259 (467)
392 1mv5_A LMRA, multidrug resista 69.6 2.3 7.9E-05 33.1 2.2 20 4-23 25-44 (243)
393 1gvn_B Zeta; postsegregational 69.6 1.7 5.9E-05 34.8 1.5 16 7-22 33-48 (287)
394 2zu0_C Probable ATP-dependent 69.5 2.4 8.4E-05 33.5 2.4 20 4-23 43-62 (267)
395 1aky_A Adenylate kinase; ATP:A 69.5 2.2 7.6E-05 32.3 2.1 17 6-22 3-19 (220)
396 2c95_A Adenylate kinase 1; tra 69.3 2.1 7.3E-05 31.5 2.0 18 5-22 7-24 (196)
397 1f2t_A RAD50 ABC-ATPase; DNA d 69.3 2.4 8.2E-05 30.2 2.1 14 10-23 26-39 (149)
398 3gfo_A Cobalt import ATP-bindi 69.2 2.6 9E-05 33.5 2.5 20 4-23 31-50 (275)
399 1vpl_A ABC transporter, ATP-bi 69.1 2.5 8.7E-05 33.2 2.4 20 4-23 38-57 (256)
400 4b4t_I 26S protease regulatory 69.1 2.2 7.5E-05 36.4 2.1 17 7-23 216-232 (437)
401 1in4_A RUVB, holliday junction 69.0 2.5 8.4E-05 34.6 2.4 16 8-23 52-67 (334)
402 3dm5_A SRP54, signal recogniti 68.8 14 0.00047 31.6 7.0 54 7-74 100-155 (443)
403 2olj_A Amino acid ABC transpor 68.8 2.6 8.9E-05 33.3 2.4 20 4-23 47-66 (263)
404 2nq2_C Hypothetical ABC transp 68.7 2.4 8.2E-05 33.3 2.2 20 4-23 28-47 (253)
405 2d2e_A SUFC protein; ABC-ATPas 68.5 2.9 9.8E-05 32.7 2.6 20 4-23 26-45 (250)
406 1tev_A UMP-CMP kinase; ploop, 68.5 1.9 6.5E-05 31.7 1.5 17 7-23 3-19 (196)
407 3k1j_A LON protease, ATP-depen 68.4 2.2 7.7E-05 38.0 2.2 20 4-23 57-76 (604)
408 1v5w_A DMC1, meiotic recombina 68.4 3.1 0.0001 34.2 2.9 24 5-29 120-143 (343)
409 1via_A Shikimate kinase; struc 68.3 2.4 8.3E-05 30.7 2.1 15 8-22 5-19 (175)
410 1zak_A Adenylate kinase; ATP:A 68.2 2.6 8.7E-05 32.0 2.2 17 6-22 4-20 (222)
411 2ixe_A Antigen peptide transpo 68.2 3.1 0.00011 33.0 2.8 20 4-23 42-61 (271)
412 2qi9_C Vitamin B12 import ATP- 68.0 3 0.0001 32.7 2.6 20 4-23 23-42 (249)
413 2chq_A Replication factor C sm 67.9 3 0.0001 33.3 2.7 14 9-22 40-53 (319)
414 2yz2_A Putative ABC transporte 67.8 3.2 0.00011 32.8 2.8 20 4-23 30-49 (266)
415 1sxj_E Activator 1 40 kDa subu 67.8 3 0.0001 34.1 2.7 15 9-23 38-52 (354)
416 1zd8_A GTP:AMP phosphotransfer 67.7 2.3 8E-05 32.4 1.9 17 6-22 6-22 (227)
417 2wwf_A Thymidilate kinase, put 67.6 2.7 9.4E-05 31.4 2.3 19 4-22 7-25 (212)
418 2plr_A DTMP kinase, probable t 67.6 2.2 7.5E-05 31.8 1.7 17 6-22 3-19 (213)
419 2f1r_A Molybdopterin-guanine d 67.5 2.1 7.2E-05 31.4 1.5 14 10-23 5-18 (171)
420 1nks_A Adenylate kinase; therm 67.3 2.3 7.7E-05 31.2 1.7 14 9-22 3-16 (194)
421 3pxg_A Negative regulator of g 67.3 2.6 8.7E-05 36.4 2.2 18 6-23 200-217 (468)
422 2yvu_A Probable adenylyl-sulfa 67.0 2.2 7.6E-05 31.3 1.6 19 5-23 11-29 (186)
423 3f9v_A Minichromosome maintena 66.8 3 0.0001 37.2 2.6 14 9-22 329-342 (595)
424 2px0_A Flagellar biosynthesis 66.8 3.2 0.00011 33.4 2.6 19 6-24 104-122 (296)
425 1rj9_A FTSY, signal recognitio 66.8 3.3 0.00011 33.5 2.7 19 6-24 101-119 (304)
426 3b9q_A Chloroplast SRP recepto 66.7 2.6 8.9E-05 34.0 2.1 20 5-24 98-117 (302)
427 3m6a_A ATP-dependent protease 66.7 2.7 9.3E-05 37.0 2.3 18 6-23 107-124 (543)
428 3fb4_A Adenylate kinase; psych 66.7 2.5 8.4E-05 31.8 1.8 14 9-22 2-15 (216)
429 1knx_A Probable HPR(Ser) kinas 66.7 2.7 9.1E-05 34.2 2.1 20 5-24 145-165 (312)
430 1htw_A HI0065; nucleotide-bind 66.6 2.9 0.0001 30.2 2.1 18 5-22 31-48 (158)
431 3pvs_A Replication-associated 66.4 2.6 8.8E-05 36.2 2.0 15 9-23 52-66 (447)
432 1cke_A CK, MSSA, protein (cyti 66.2 2.5 8.6E-05 32.0 1.8 16 7-22 5-20 (227)
433 1sxj_A Activator 1 95 kDa subu 66.1 2.7 9.1E-05 36.7 2.1 16 8-23 78-93 (516)
434 2iyv_A Shikimate kinase, SK; t 65.7 3.4 0.00012 30.1 2.4 15 8-22 3-17 (184)
435 1nn5_A Similar to deoxythymidy 65.5 2.9 9.9E-05 31.3 2.0 18 5-22 7-24 (215)
436 2rb4_A ATP-dependent RNA helic 65.5 12 0.00039 27.1 5.3 45 46-96 34-78 (175)
437 2cdn_A Adenylate kinase; phosp 65.4 3.2 0.00011 30.9 2.2 17 6-22 19-35 (201)
438 2bbw_A Adenylate kinase 4, AK4 65.4 3 0.0001 32.3 2.1 17 7-23 27-43 (246)
439 2z4s_A Chromosomal replication 65.3 3 0.0001 35.6 2.3 17 7-23 130-146 (440)
440 2ihy_A ABC transporter, ATP-bi 65.3 3.6 0.00012 32.8 2.6 20 4-23 44-63 (279)
441 2ce7_A Cell division protein F 65.1 2.7 9.3E-05 36.3 2.0 16 8-23 50-65 (476)
442 1ak2_A Adenylate kinase isoenz 64.9 3.1 0.00011 31.9 2.1 17 6-22 15-31 (233)
443 2bbs_A Cystic fibrosis transme 64.7 3.9 0.00013 32.8 2.7 20 4-23 61-80 (290)
444 1e6c_A Shikimate kinase; phosp 64.6 3.5 0.00012 29.6 2.3 15 8-22 3-17 (173)
445 3dl0_A Adenylate kinase; phosp 64.5 3.1 0.00011 31.3 2.0 14 9-22 2-15 (216)
446 1ypw_A Transitional endoplasmi 64.2 3 0.0001 38.7 2.2 20 4-23 235-254 (806)
447 4akg_A Glutathione S-transfera 64.1 2.2 7.6E-05 44.8 1.4 20 4-23 1264-1283(2695)
448 2p5t_B PEZT; postsegregational 64.1 2.3 7.8E-05 33.2 1.2 18 5-22 30-47 (253)
449 4e22_A Cytidylate kinase; P-lo 64.1 3.6 0.00012 32.1 2.3 17 6-22 26-42 (252)
450 1sxj_C Activator 1 40 kDa subu 64.1 3 0.0001 34.0 2.0 14 10-23 49-62 (340)
451 2bwj_A Adenylate kinase 5; pho 64.0 3 0.0001 30.7 1.9 16 7-22 12-27 (199)
452 3b85_A Phosphate starvation-in 64.0 3.3 0.00011 31.4 2.1 20 5-24 20-39 (208)
453 1iqp_A RFCS; clamp loader, ext 63.9 3.4 0.00012 33.1 2.3 15 9-23 48-62 (327)
454 2if2_A Dephospho-COA kinase; a 63.8 2.9 0.0001 31.1 1.7 14 9-22 3-16 (204)
455 1w4r_A Thymidine kinase; type 63.8 8.2 0.00028 29.0 4.2 38 7-55 20-57 (195)
456 1qf9_A UMP/CMP kinase, protein 63.7 3.2 0.00011 30.3 1.9 15 8-22 7-21 (194)
457 1fuk_A Eukaryotic initiation f 63.6 16 0.00055 26.0 5.8 45 46-96 30-74 (165)
458 1m7g_A Adenylylsulfate kinase; 63.6 3.3 0.00011 31.2 2.0 18 5-22 23-40 (211)
459 2jaq_A Deoxyguanosine kinase; 63.6 3 0.0001 30.8 1.8 14 9-22 2-15 (205)
460 1rz3_A Hypothetical protein rb 63.5 3.4 0.00012 30.9 2.0 17 7-23 22-38 (201)
461 3auy_A DNA double-strand break 63.3 3.2 0.00011 34.5 2.0 14 10-23 28-41 (371)
462 2d7d_A Uvrabc system protein B 63.3 15 0.00052 33.1 6.6 66 166-245 12-82 (661)
463 1jjv_A Dephospho-COA kinase; P 63.2 3.4 0.00011 30.8 2.0 14 9-22 4-17 (206)
464 1ukz_A Uridylate kinase; trans 63.0 3.2 0.00011 30.8 1.8 14 9-22 17-30 (203)
465 1u0j_A DNA replication protein 62.8 3.6 0.00012 32.6 2.1 17 9-25 106-122 (267)
466 1zuh_A Shikimate kinase; alpha 62.8 3.6 0.00012 29.5 2.0 15 8-22 8-22 (168)
467 3be4_A Adenylate kinase; malar 62.5 3.4 0.00012 31.3 1.9 17 6-22 4-20 (217)
468 2pjz_A Hypothetical protein ST 62.4 4.4 0.00015 32.0 2.6 18 7-24 30-47 (263)
469 1svm_A Large T antigen; AAA+ f 62.4 3.8 0.00013 34.3 2.3 19 4-22 166-184 (377)
470 3cmu_A Protein RECA, recombina 62.4 26 0.0009 36.0 8.5 20 4-23 1424-1443(2050)
471 1t5i_A C_terminal domain of A 62.1 17 0.00059 26.2 5.7 45 46-96 31-75 (172)
472 3vkg_A Dynein heavy chain, cyt 61.9 2.9 9.8E-05 44.6 1.7 19 4-22 1301-1319(3245)
473 2j9r_A Thymidine kinase; TK1, 61.9 11 0.00039 28.6 4.7 40 7-57 28-67 (214)
474 2pt5_A Shikimate kinase, SK; a 61.6 3.8 0.00013 29.3 2.0 14 9-22 2-15 (168)
475 3pxi_A Negative regulator of g 61.5 3.5 0.00012 37.8 2.1 17 6-22 200-216 (758)
476 2vli_A Antibiotic resistance p 61.4 3 0.0001 30.3 1.4 18 6-23 4-21 (183)
477 1pui_A ENGB, probable GTP-bind 61.3 3.9 0.00013 30.4 2.0 19 4-22 23-41 (210)
478 3fvq_A Fe(3+) IONS import ATP- 61.2 4.2 0.00014 33.8 2.3 20 4-23 27-46 (359)
479 2z0h_A DTMP kinase, thymidylat 61.2 3.6 0.00012 30.2 1.8 13 10-22 3-15 (197)
480 2p6n_A ATP-dependent RNA helic 61.1 17 0.0006 26.7 5.6 44 47-96 55-98 (191)
481 2pbr_A DTMP kinase, thymidylat 61.1 3.6 0.00012 30.1 1.8 13 10-22 3-15 (195)
482 3d31_A Sulfate/molybdate ABC t 60.8 4.1 0.00014 33.6 2.2 20 4-23 23-42 (348)
483 2r8r_A Sensor protein; KDPD, P 60.8 11 0.00038 29.0 4.5 19 6-24 4-23 (228)
484 3qks_A DNA double-strand break 60.6 4.2 0.00014 30.5 2.1 14 10-23 26-39 (203)
485 1odf_A YGR205W, hypothetical 3 60.4 3.7 0.00013 32.9 1.8 14 9-22 33-46 (290)
486 2og2_A Putative signal recogni 60.1 4 0.00014 33.9 2.0 20 6-25 156-175 (359)
487 2yyz_A Sugar ABC transporter, 60.0 4.7 0.00016 33.5 2.4 20 4-23 26-45 (359)
488 2jeo_A Uridine-cytidine kinase 60.0 4 0.00014 31.5 2.0 18 6-23 24-41 (245)
489 1r6b_X CLPA protein; AAA+, N-t 60.0 4.1 0.00014 37.3 2.3 18 6-23 206-223 (758)
490 3a4m_A L-seryl-tRNA(SEC) kinas 59.8 4.1 0.00014 31.9 2.0 16 7-22 4-19 (260)
491 3gd7_A Fusion complex of cysti 59.6 5.2 0.00018 33.6 2.7 20 4-23 44-63 (390)
492 3tlx_A Adenylate kinase 2; str 59.6 3.6 0.00012 31.9 1.6 17 6-22 28-44 (243)
493 3eaq_A Heat resistant RNA depe 59.3 23 0.00079 26.5 6.2 45 46-96 31-75 (212)
494 1z47_A CYSA, putative ABC-tran 59.3 4.6 0.00016 33.5 2.3 20 4-23 38-57 (355)
495 1ko7_A HPR kinase/phosphatase; 59.2 4.5 0.00015 32.9 2.1 16 6-21 143-158 (314)
496 1uf9_A TT1252 protein; P-loop, 59.1 4.2 0.00014 30.0 1.9 14 9-22 10-23 (203)
497 3kl4_A SRP54, signal recogniti 59.1 20 0.00067 30.5 6.2 17 7-23 97-113 (433)
498 2it1_A 362AA long hypothetical 59.0 4.9 0.00017 33.4 2.4 20 4-23 26-45 (362)
499 1vht_A Dephospho-COA kinase; s 58.8 4.4 0.00015 30.5 2.0 16 7-22 4-19 (218)
500 4a82_A Cystic fibrosis transme 58.7 4.3 0.00015 36.0 2.1 19 4-22 364-382 (578)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.94 E-value=2.3e-27 Score=206.12 Aligned_cols=145 Identities=27% Similarity=0.381 Sum_probs=118.4
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.+++|+|++++||||||||++|++|++++++..... ....++++||++||||||.|+++.+++++...+ +++.
T Consensus 87 i~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~---~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~--~~~~ 161 (434)
T 2db3_A 87 IPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHE---LELGRPQVVIVSPTRELAIQIFNEARKFAFESY--LKIG 161 (434)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCC---CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSS--CCCC
T ss_pred HHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccc---cccCCccEEEEecCHHHHHHHHHHHHHHhccCC--cEEE
Confidence 46788999999999999999999999999999875421 223478999999999999999999999988776 7888
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
.++||.+...+.+.+.++++|. |. ||+++.++..+....+.+ ++++|.||+ +.+.+++|.+++.+.+.
T Consensus 162 ~~~gg~~~~~~~~~l~~~~~Iv--v~----Tp~~l~~~l~~~~~~l~~-~~~lVlDEa-----h~~~~~gf~~~~~~i~~ 229 (434)
T 2db3_A 162 IVYGGTSFRHQNECITRGCHVV--IA----TPGRLLDFVDRTFITFED-TRFVVLDEA-----DRMLDMGFSEDMRRIMT 229 (434)
T ss_dssp EECTTSCHHHHHHHHTTCCSEE--EE----CHHHHHHHHHTTSCCCTT-CCEEEEETH-----HHHTSTTTHHHHHHHHH
T ss_pred EEECCCCHHHHHHHhhcCCCEE--EE----ChHHHHHHHHhCCccccc-CCeEEEccH-----hhhhccCcHHHHHHHHH
Confidence 9999998888888888888773 33 488887665544433444 889999997 88899999999877776
Q ss_pred HC
Q psy7786 161 AK 162 (252)
Q Consensus 161 ~~ 162 (252)
..
T Consensus 230 ~~ 231 (434)
T 2db3_A 230 HV 231 (434)
T ss_dssp CT
T ss_pred hc
Confidence 54
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.90 E-value=1e-24 Score=188.12 Aligned_cols=147 Identities=23% Similarity=0.341 Sum_probs=110.1
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcC----------CCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETK----------LPFLPGEGPYGLIICPSRELARQTHDIIQYYC 70 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~----------~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~ 70 (252)
||.+++|+|++++||||||||++|++|+++.+...... .......++++||++||||||.|+++.+++++
T Consensus 46 i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (417)
T 2i4i_A 46 IPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFS 125 (417)
T ss_dssp HHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHh
Confidence 46688999999999999999999999999998764311 00111235789999999999999999999998
Q ss_pred HhCCCCcceeeeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCC
Q psy7786 71 AALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMK 150 (252)
Q Consensus 71 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~ 150 (252)
...+ +++..++||.+..++.+.+.++++|. + +||+++..+.......+. .+.++|.||+ +.+.+.+
T Consensus 126 ~~~~--~~~~~~~g~~~~~~~~~~~~~~~~I~--v----~Tp~~l~~~l~~~~~~~~-~~~~iViDEa-----h~~~~~~ 191 (417)
T 2i4i_A 126 YRSR--VRPCVVYGGADIGQQIRDLERGCHLL--V----ATPGRLVDMMERGKIGLD-FCKYLVLDEA-----DRMLDMG 191 (417)
T ss_dssp TTSS--CCEEEECSSSCHHHHHHHHTTCCSEE--E----ECHHHHHHHHHTTSBCCT-TCCEEEESSH-----HHHHHTT
T ss_pred CcCC--ceEEEEECCCCHHHHHHHhhCCCCEE--E----EChHHHHHHHHcCCcChh-hCcEEEEECh-----hHhhccC
Confidence 8776 88889999988887777777776662 2 347776654443322233 3788999997 6777777
Q ss_pred CCHHHHHHHHH
Q psy7786 151 LPESLVRALEA 161 (252)
Q Consensus 151 l~~~l~~~l~~ 161 (252)
+...+...+..
T Consensus 192 ~~~~~~~i~~~ 202 (417)
T 2i4i_A 192 FEPQIRRIVEQ 202 (417)
T ss_dssp CHHHHHHHHTS
T ss_pred cHHHHHHHHHh
Confidence 77777665553
No 3
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.88 E-value=1.3e-24 Score=174.50 Aligned_cols=144 Identities=26% Similarity=0.472 Sum_probs=114.7
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.+++|+|++++||||||||++|++|+++.+..... .....++++||++||||||.|+++.++++....+ +++.
T Consensus 60 i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~---~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~--~~~~ 134 (242)
T 3fe2_A 60 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPF---LERGDGPICLVLAPTRELAQQVQQVAAEYCRACR--LKST 134 (242)
T ss_dssp HHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCC---CCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTT--CCEE
T ss_pred HHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccc---cccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcC--ceEE
Confidence 3567899999999999999999999999998865331 1223578899999999999999999999999887 7888
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
.++||.+...+.+.+.++++|. | ++|+++.++..+....+.+ ++++|.||+ +.+.+.++...+...+.
T Consensus 135 ~~~g~~~~~~~~~~~~~~~~I~--v----~Tp~~l~~~l~~~~~~~~~-~~~lViDEa-----h~l~~~~~~~~~~~i~~ 202 (242)
T 3fe2_A 135 CIYGGAPKGPQIRDLERGVEIC--I----ATPGRLIDFLECGKTNLRR-TTYLVLDEA-----DRMLDMGFEPQIRKIVD 202 (242)
T ss_dssp EECTTSCHHHHHHHHHHCCSEE--E----ECHHHHHHHHHHTSCCCTT-CCEEEETTH-----HHHHHTTCHHHHHHHHT
T ss_pred EEECCCChHHHHHHhcCCCCEE--E----ECHHHHHHHHHcCCCCccc-ccEEEEeCH-----HHHhhhCcHHHHHHHHH
Confidence 9999998888888888887772 2 3488876665544333444 889999997 77888888888766654
Q ss_pred H
Q psy7786 161 A 161 (252)
Q Consensus 161 ~ 161 (252)
.
T Consensus 203 ~ 203 (242)
T 3fe2_A 203 Q 203 (242)
T ss_dssp T
T ss_pred h
Confidence 4
No 4
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.88 E-value=8.5e-23 Score=182.84 Aligned_cols=144 Identities=17% Similarity=0.250 Sum_probs=109.1
Q ss_pred Cccc--CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhC-CC-Cc
Q psy7786 2 VTYR--NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL-PI-PL 77 (252)
Q Consensus 2 ~~~~--~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~-~~-~~ 77 (252)
|.++ +|+|++++||||||||++|++|+++.+...... ...++++||++||||||.|+++.++.+.... +. .+
T Consensus 104 ~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~----~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~ 179 (563)
T 3i5x_A 104 KPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD----SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKY 179 (563)
T ss_dssp HHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS----STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTS
T ss_pred HHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc----ccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCce
Confidence 4556 689999999999999999999999999775431 1236789999999999999999999986542 11 25
Q ss_pred ceeeeeCCcccCcchhhhhh-cccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHH
Q psy7786 78 RTCLAIGGVPMNQSLDVIKK-GIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLV 156 (252)
Q Consensus 78 ~~~~~~g~~~~~~~~~~l~~-~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~ 156 (252)
.+...+||.+...+.+.+.+ +++|. | +||+++.++..+......+.+.++|.||+ +.+.+.+|.+.+.
T Consensus 180 ~~~~~~g~~~~~~~~~~~~~~~~~Ii--v----~Tp~~l~~~l~~~~~~~~~~~~~lViDEa-----h~l~~~~f~~~~~ 248 (563)
T 3i5x_A 180 ACVSLVGGTDFRAAMNKMNKLRPNIV--I----ATPGRLIDVLEKYSNKFFRFVDYKVLDEA-----DRLLEIGFRDDLE 248 (563)
T ss_dssp CEEEECTTSCHHHHHHHHHHHCCSEE--E----ECHHHHHHHHHHHHHHHCTTCCEEEEETH-----HHHTSTTTHHHHH
T ss_pred eEEEEECCcCHHHHHHHHhcCCCCEE--E----ECcHHHHHHHHhccccccccceEEEEeCH-----HHHhccchHHHHH
Confidence 67788999887777666644 56662 3 34888877776654444455899999997 7788888888775
Q ss_pred HHHH
Q psy7786 157 RALE 160 (252)
Q Consensus 157 ~~l~ 160 (252)
..+.
T Consensus 249 ~i~~ 252 (563)
T 3i5x_A 249 TISG 252 (563)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 5
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.88 E-value=1e-22 Score=182.91 Aligned_cols=144 Identities=17% Similarity=0.239 Sum_probs=110.4
Q ss_pred Cccc--CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhC-C-CCc
Q psy7786 2 VTYR--NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL-P-IPL 77 (252)
Q Consensus 2 ~~~~--~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~-~-~~~ 77 (252)
|.++ +|+|++++||||||||++|++|+++.+...... ...++++||++||||||.|+.+.++.+.... + ..+
T Consensus 53 ~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~----~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~ 128 (579)
T 3sqw_A 53 KPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD----SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKY 128 (579)
T ss_dssp HHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS----STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTS
T ss_pred HHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc----ccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccce
Confidence 4566 789999999999999999999999998775421 1236789999999999999999999987542 1 126
Q ss_pred ceeeeeCCcccCcchhhhhh-cccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHH
Q psy7786 78 RTCLAIGGVPMNQSLDVIKK-GIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLV 156 (252)
Q Consensus 78 ~~~~~~g~~~~~~~~~~l~~-~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~ 156 (252)
.+...+||.....+.+.+.+ +++|. | +||+++.++..+........+.++|.||+ +.+.+++|.+++.
T Consensus 129 ~~~~~~gg~~~~~~~~~l~~~~~~Il--V----~Tp~~l~~~l~~~~~~~~~~~~~lViDEa-----h~l~~~gf~~~~~ 197 (579)
T 3sqw_A 129 ACVSLVGGTDFRAAMNKMNKLRPNIV--I----ATPGRLIDVLEKYSNKFFRFVDYKVLDEA-----DRLLEIGFRDDLE 197 (579)
T ss_dssp CEEEECTTSCHHHHHHHHHHHCCSEE--E----ECHHHHHHHHHHHHHHHCTTCCEEEEETH-----HHHTSTTTHHHHH
T ss_pred EEEEEECCccHHHHHHHHhcCCCCEE--E----ECHHHHHHHHHhccccccccCCEEEEECh-----HHhhcCCCHHHHH
Confidence 67788999887777777654 56662 3 34888887776654444455899999997 7888888888875
Q ss_pred HHHH
Q psy7786 157 RALE 160 (252)
Q Consensus 157 ~~l~ 160 (252)
..+.
T Consensus 198 ~i~~ 201 (579)
T 3sqw_A 198 TISG 201 (579)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 6
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.87 E-value=3.1e-23 Score=178.54 Aligned_cols=139 Identities=19% Similarity=0.265 Sum_probs=106.9
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
|+.+++|+|+++++|||||||++|++|+++.+.... .+.++||++|||+|+.|+++.+++++...+ +++.
T Consensus 68 i~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~--------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~--~~~~ 137 (410)
T 2j0s_A 68 IKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV--------RETQALILAPTRELAVQIQKGLLALGDYMN--VQCH 137 (410)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTS--------CSCCEEEECSSHHHHHHHHHHHHHHTTTTT--CCEE
T ss_pred HHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhcc--------CCceEEEEcCcHHHHHHHHHHHHHHhccCC--eEEE
Confidence 356789999999999999999999999998764322 367899999999999999999999988877 7888
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
.++||.+...+...+..+++|. + ++|+++.++..+....+. .+.++|.||+ +.+.+.++...+...+.
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~iv--v----~Tp~~l~~~l~~~~~~~~-~~~~vViDEa-----h~~~~~~~~~~~~~i~~ 205 (410)
T 2j0s_A 138 ACIGGTNVGEDIRKLDYGQHVV--A----GTPGRVFDMIRRRSLRTR-AIKMLVLDEA-----DEMLNKGFKEQIYDVYR 205 (410)
T ss_dssp EECTTSCHHHHHHHHHHCCSEE--E----ECHHHHHHHHHTTSSCCT-TCCEEEEETH-----HHHTSTTTHHHHHHHHT
T ss_pred EEECCCCHHHHHHHhhcCCCEE--E----cCHHHHHHHHHhCCccHh-heeEEEEccH-----HHHHhhhhHHHHHHHHH
Confidence 8999988888877777777662 2 347776655444322233 3789999997 66777777776655554
Q ss_pred H
Q psy7786 161 A 161 (252)
Q Consensus 161 ~ 161 (252)
.
T Consensus 206 ~ 206 (410)
T 2j0s_A 206 Y 206 (410)
T ss_dssp T
T ss_pred h
Confidence 3
No 7
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.87 E-value=9.6e-24 Score=170.56 Aligned_cols=148 Identities=24% Similarity=0.374 Sum_probs=111.7
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcC-CCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcce
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETK-LPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRT 79 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~-~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~ 79 (252)
|+.+++|+|++++||||||||++|++|+++.+...... .......++++||++||||||.|+++.+++++...+ +++
T Consensus 54 i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~--~~~ 131 (253)
T 1wrb_A 54 IPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTP--LRS 131 (253)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSS--CCE
T ss_pred HHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCC--ceE
Confidence 35678999999999999999999999999988754321 111123467899999999999999999999988776 788
Q ss_pred eeeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHH
Q psy7786 80 CLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRAL 159 (252)
Q Consensus 80 ~~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l 159 (252)
..++||.+...+.+.+..+++|. | ++|+++.....+....+. .+.++|.||+ +.+.+.++...+...+
T Consensus 132 ~~~~g~~~~~~~~~~~~~~~~Iv--v----~Tp~~l~~~l~~~~~~~~-~~~~lViDEa-----h~~~~~~~~~~~~~i~ 199 (253)
T 1wrb_A 132 CVVYGGADTHSQIREVQMGCHLL--V----ATPGRLVDFIEKNKISLE-FCKYIVLDEA-----DRMLDMGFEPQIRKII 199 (253)
T ss_dssp EEECSSSCSHHHHHHHSSCCSEE--E----ECHHHHHHHHHTTSBCCT-TCCEEEEETH-----HHHHHTTCHHHHHHHH
T ss_pred EEEECCCCHHHHHHHhCCCCCEE--E----ECHHHHHHHHHcCCCChh-hCCEEEEeCH-----HHHHhCchHHHHHHHH
Confidence 88999988877777777776762 2 347776654443332333 3789999997 7788888888887777
Q ss_pred HHC
Q psy7786 160 EAK 162 (252)
Q Consensus 160 ~~~ 162 (252)
...
T Consensus 200 ~~~ 202 (253)
T 1wrb_A 200 EES 202 (253)
T ss_dssp HSS
T ss_pred hhc
Confidence 643
No 8
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.86 E-value=9.5e-24 Score=174.68 Aligned_cols=135 Identities=21% Similarity=0.280 Sum_probs=99.4
Q ss_pred CCcccCC--CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcc
Q psy7786 1 MVTYRNS--RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLR 78 (252)
Q Consensus 1 i~~~~~g--~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~ 78 (252)
||.+++| +|++++||||||||++|++|+++++.... .++++||++||||||.|+++.++.+++..+ +++
T Consensus 123 i~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~--------~~~~~lil~PtreLa~Q~~~~~~~l~~~~~-~~~ 193 (300)
T 3fmo_B 123 LPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN--------KYPQCLCLSPTYELALQTGKVIEQMGKFYP-ELK 193 (300)
T ss_dssp HHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTS--------CSCCEEEECSSHHHHHHHHHHHHHHTTTST-TCC
T ss_pred HHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccC--------CCceEEEEcCcHHHHHHHHHHHHHHHhhCC-CcE
Confidence 4667887 99999999999999999999999875433 477899999999999999999999988764 378
Q ss_pred eeeeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhH-HHHHhhhhceeeccCCCCCccccccc-CCCCHHHH
Q psy7786 79 TCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQV-HDIIRRNLRILVEGDDVPPACCSFRL-MKLPESLV 156 (252)
Q Consensus 79 ~~~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~-~~~l~~~~~~~V~de~~~~~~~~~~~-~~l~~~l~ 156 (252)
+...+|+....... ..+++|. | +||+++.++..+. ...+. .++++|.||+ +.+.+ .++...+.
T Consensus 194 ~~~~~~~~~~~~~~---~~~~~Il--V----~TP~~l~~~l~~~~~~~l~-~l~~lVlDEa-----d~l~~~~~~~~~~~ 258 (300)
T 3fmo_B 194 LAYAVRGNKLERGQ---KISEQIV--I----GTPGTVLDWCSKLKFIDPK-KIKVFVLDEA-----DVMIATQGHQDQSI 258 (300)
T ss_dssp EEEESTTCCCCTTC---CCCCSEE--E----ECHHHHHHHHTTTCCCCGG-GCSEEEETTH-----HHHHHSTTHHHHHH
T ss_pred EEEEeCCccHhhhh---cCCCCEE--E----ECHHHHHHHHHhcCCCChh-hceEEEEeCH-----HHHhhccCcHHHHH
Confidence 88888887654433 3345552 2 3477776555432 22233 4899999997 67666 56666654
Q ss_pred HHH
Q psy7786 157 RAL 159 (252)
Q Consensus 157 ~~l 159 (252)
..+
T Consensus 259 ~i~ 261 (300)
T 3fmo_B 259 RIQ 261 (300)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 9
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.86 E-value=1.4e-23 Score=170.52 Aligned_cols=145 Identities=25% Similarity=0.364 Sum_probs=112.2
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.+++|+|++++||||||||++|++|+++.+..... ....+.++||++||||||.|+++.++++....+ +++.
T Consensus 85 i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~----~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~--~~~~ 158 (262)
T 3ly5_A 85 IRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF----MPRNGTGVLILSPTRELAMQTFGVLKELMTHHV--HTYG 158 (262)
T ss_dssp HHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC----CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCC--SCEE
T ss_pred HHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc----cccCCceEEEEeCCHHHHHHHHHHHHHHHhhcC--ceEE
Confidence 3567889999999999999999999999998876331 112367899999999999999999999988776 7888
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
.++||.....+...+.++++|. | +||+++..+...........+.++|.||+ +.+.+.++...+...+.
T Consensus 159 ~~~g~~~~~~~~~~~~~~~~Ii--v----~Tp~~l~~~~~~~~~~~~~~l~~lViDEa-----h~l~~~~~~~~l~~i~~ 227 (262)
T 3ly5_A 159 LIMGGSNRSAEAQKLGNGINII--V----ATPGRLLDHMQNTPGFMYKNLQCLVIDEA-----DRILDVGFEEELKQIIK 227 (262)
T ss_dssp EECSSSCHHHHHHHHHHCCSEE--E----ECHHHHHHHHHHCTTCCCTTCCEEEECSH-----HHHHHTTCHHHHHHHHH
T ss_pred EEECCCCHHHHHHHhcCCCCEE--E----EcHHHHHHHHHccCCcccccCCEEEEcCh-----HHHhhhhHHHHHHHHHH
Confidence 8999988877777777777762 2 34777765544432222234889999997 77888888888776665
Q ss_pred HC
Q psy7786 161 AK 162 (252)
Q Consensus 161 ~~ 162 (252)
..
T Consensus 228 ~~ 229 (262)
T 3ly5_A 228 LL 229 (262)
T ss_dssp HS
T ss_pred hC
Confidence 53
No 10
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.85 E-value=3.4e-23 Score=164.76 Aligned_cols=145 Identities=24% Similarity=0.287 Sum_probs=102.8
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.+++|+|++++||||||||++|++|+++.+...... .....++++||++||||||.|+++.++++. ..+ +++.
T Consensus 51 i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~--~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~--~~~~ 125 (228)
T 3iuy_A 51 WPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS--REQRNGPGMLVLTPTRELALHVEAECSKYS-YKG--LKSI 125 (228)
T ss_dssp HHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-----------CCCSEEEECSSHHHHHHHHHHHHHHC-CTT--CCEE
T ss_pred HHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccch--hhccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccC--ceEE
Confidence 35678999999999999999999999999887643221 112357889999999999999999999885 233 7888
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
.++||.+...+.+.+.++++|. | ++|+++..+..+....+.+ +.++|.||+ +.+.+.++...+...+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~ii--v----~Tp~~l~~~~~~~~~~~~~-~~~lViDEa-----h~~~~~~~~~~~~~i~~ 193 (228)
T 3iuy_A 126 CIYGGRNRNGQIEDISKGVDII--I----ATPGRLNDLQMNNSVNLRS-ITYLVIDEA-----DKMLDMEFEPQIRKILL 193 (228)
T ss_dssp EECC------CHHHHHSCCSEE--E----ECHHHHHHHHHTTCCCCTT-CCEEEECCH-----HHHHHTTCHHHHHHHHH
T ss_pred EEECCCChHHHHHHhcCCCCEE--E----ECHHHHHHHHHcCCcCccc-ceEEEEECH-----HHHhccchHHHHHHHHH
Confidence 9999999888888888877762 2 3477776544333333333 789999997 77778888888877665
Q ss_pred HC
Q psy7786 161 AK 162 (252)
Q Consensus 161 ~~ 162 (252)
..
T Consensus 194 ~~ 195 (228)
T 3iuy_A 194 DV 195 (228)
T ss_dssp HS
T ss_pred hC
Confidence 53
No 11
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.85 E-value=4.9e-23 Score=166.08 Aligned_cols=140 Identities=26% Similarity=0.373 Sum_probs=108.0
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
|+.+++|+|++++||||||||++|++|+++.+.... .++++||++|||||+.|+++.+++++...+ +++.
T Consensus 74 i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~--------~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~--~~~~ 143 (249)
T 3ber_A 74 IPLALQGRDIIGLAETGSGKTGAFALPILNALLETP--------QRLFALVLTPTRELAFQISEQFEALGSSIG--VQSA 143 (249)
T ss_dssp HHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC--------CSSCEEEECSSHHHHHHHHHHHHHHHGGGT--CCEE
T ss_pred HHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC--------CCceEEEEeCCHHHHHHHHHHHHHHhccCC--eeEE
Confidence 356789999999999999999999999999887643 367899999999999999999999998877 7888
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
.++||.+...+...+.++++|. + ++|+++.....+........+.++|.||+ +.+.+.++...+...+.
T Consensus 144 ~~~g~~~~~~~~~~~~~~~~I~--v----~Tp~~l~~~l~~~~~~~l~~~~~lViDEa-----h~l~~~~~~~~l~~i~~ 212 (249)
T 3ber_A 144 VIVGGIDSMSQSLALAKKPHII--I----ATPGRLIDHLENTKGFNLRALKYLVMDEA-----DRILNMDFETEVDKILK 212 (249)
T ss_dssp EECTTSCHHHHHHHHHTCCSEE--E----ECHHHHHHHHHHSTTCCCTTCCEEEECSH-----HHHHHTTCHHHHHHHHH
T ss_pred EEECCCChHHHHHHhcCCCCEE--E----ECHHHHHHHHHcCCCcCccccCEEEEcCh-----hhhhccChHHHHHHHHH
Confidence 8999988776666666776662 2 34777655443321111234789999997 77777788887766554
Q ss_pred H
Q psy7786 161 A 161 (252)
Q Consensus 161 ~ 161 (252)
.
T Consensus 213 ~ 213 (249)
T 3ber_A 213 V 213 (249)
T ss_dssp S
T ss_pred h
Confidence 3
No 12
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.85 E-value=5.4e-22 Score=171.19 Aligned_cols=137 Identities=12% Similarity=0.167 Sum_probs=100.9
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.+++|+|++++||||||||++|++|++..+. .+.++||++||||||.|+++.++.++. .+ +++.
T Consensus 30 i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~-----------~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~--~~v~ 95 (414)
T 3oiy_A 30 AKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-----------KGKKSALVFPTVTLVKQTLERLQKLAD-EK--VKIF 95 (414)
T ss_dssp HHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT-----------TTCCEEEEESSHHHHHHHHHHHHHHCC-SS--CCEE
T ss_pred HHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc-----------CCCEEEEEECCHHHHHHHHHHHHHHcc-CC--ceEE
Confidence 356889999999999999999999999887651 367899999999999999999999877 55 8999
Q ss_pred eeeCCccc---Ccchhhhhhc-ccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCC--C---Cccccccc-CC
Q psy7786 81 LAIGGVPM---NQSLDVIKKG-IQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDV--P---PACCSFRL-MK 150 (252)
Q Consensus 81 ~~~g~~~~---~~~~~~l~~~-~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~--~---~~~~~~~~-~~ 150 (252)
.++||.+. ..+.+.+.++ ++|. +. ||+++.++... .....+.++|.||+- . +..+.+.+ ++
T Consensus 96 ~~~g~~~~~~~~~~~~~l~~~~~~Ii--v~----Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~ 166 (414)
T 3oiy_A 96 GFYSSMKKEEKEKFEKSFEEDDYHIL--VF----STQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVG 166 (414)
T ss_dssp ECCTTSCHHHHHHHHHHHHHTCCSEE--EE----EHHHHHHCHHH---HTTCCCSEEEESCHHHHHHCHHHHHHHHHHTT
T ss_pred EEECCCChhhHHHHHHHhhcCCCCEE--EE----CHHHHHHHHHH---hccccccEEEEeChHhhhhccchhhhHHhhcC
Confidence 99999887 4555666665 6662 33 48888766542 222358999999960 0 00023444 78
Q ss_pred CCHH-HHHHHH
Q psy7786 151 LPES-LVRALE 160 (252)
Q Consensus 151 l~~~-l~~~l~ 160 (252)
|.++ +...+.
T Consensus 167 ~~~~~~~~i~~ 177 (414)
T 3oiy_A 167 IPEEIIRKAFS 177 (414)
T ss_dssp CCHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 8888 444443
No 13
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.84 E-value=5.4e-23 Score=162.64 Aligned_cols=140 Identities=20% Similarity=0.198 Sum_probs=104.0
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCC--Ccce
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPI--PLRT 79 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~--~~~~ 79 (252)
+.+++|+|+++++|||||||++|++|+++.+.... .+.++||++|||||+.|+++.++++....+. ++++
T Consensus 36 ~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~--------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~ 107 (219)
T 1q0u_A 36 PGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPER--------AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVA 107 (219)
T ss_dssp HHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTS--------CSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCE
T ss_pred HHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCc--------CCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEE
Confidence 56788999999999999999999999998875432 3678999999999999999999999887621 2778
Q ss_pred eeeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHH
Q psy7786 80 CLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRAL 159 (252)
Q Consensus 80 ~~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l 159 (252)
..++||.+...+.+.+..+++|. + ++|+++.....+....+. .+.++|.||+ +.+.+.++...+...+
T Consensus 108 ~~~~g~~~~~~~~~~~~~~~~Ii--v----~Tp~~l~~~l~~~~~~~~-~~~~lViDEa-----h~~~~~~~~~~l~~i~ 175 (219)
T 1q0u_A 108 RCLIGGTDKQKALEKLNVQPHIV--I----GTPGRINDFIREQALDVH-TAHILVVDEA-----DLMLDMGFITDVDQIA 175 (219)
T ss_dssp EEECCCSHHHHTTCCCSSCCSEE--E----ECHHHHHHHHHTTCCCGG-GCCEEEECSH-----HHHHHTTCHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHcCCCCCEE--E----eCHHHHHHHHHcCCCCcC-cceEEEEcCc-----hHHhhhChHHHHHHHH
Confidence 88899987766666555555552 2 347666654433222333 4789999997 6777777777665555
Q ss_pred HH
Q psy7786 160 EA 161 (252)
Q Consensus 160 ~~ 161 (252)
..
T Consensus 176 ~~ 177 (219)
T 1q0u_A 176 AR 177 (219)
T ss_dssp HT
T ss_pred Hh
Confidence 43
No 14
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.84 E-value=8.1e-23 Score=163.61 Aligned_cols=139 Identities=17% Similarity=0.266 Sum_probs=95.9
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
|+.+++|+|+++++|||||||++|++|+++.+.... .+.++||++|||||+.|+++.++.++...+ +++.
T Consensus 61 i~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~--------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~--~~~~ 130 (237)
T 3bor_A 61 IIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEF--------KETQALVLAPTRELAQQIQKVILALGDYMG--ATCH 130 (237)
T ss_dssp HHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTS--------CSCCEEEECSSHHHHHHHHHHHHHHTTTTT--CCEE
T ss_pred HHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC--------CCceEEEEECcHHHHHHHHHHHHHHhhhcC--ceEE
Confidence 356789999999999999999999999998875432 367899999999999999999999988776 7788
Q ss_pred eeeCCcccCcchhhhhhc-ccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKG-IQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRAL 159 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~-~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l 159 (252)
.++||.+...+.+.+.++ ++|. + ++|+++.++..+....+. .+.++|.||+ +.+.+.++...+...+
T Consensus 131 ~~~g~~~~~~~~~~l~~~~~~Il--v----~Tp~~l~~~l~~~~~~~~-~~~~lViDEa-----h~~~~~~~~~~l~~i~ 198 (237)
T 3bor_A 131 ACIGGTNVRNEMQKLQAEAPHIV--V----GTPGRVFDMLNRRYLSPK-WIKMFVLDEA-----DEMLSRGFKDQIYEIF 198 (237)
T ss_dssp EECC-------------CCCSEE--E----ECHHHHHHHHHTTSSCST-TCCEEEEESH-----HHHHHTTCHHHHHHHH
T ss_pred EEECCCchHHHHHHHhcCCCCEE--E----ECHHHHHHHHHhCCcCcc-cCcEEEECCc-----hHhhccCcHHHHHHHH
Confidence 889998877777766655 5552 2 336666554433332333 3789999997 6777777777776655
Q ss_pred HH
Q psy7786 160 EA 161 (252)
Q Consensus 160 ~~ 161 (252)
..
T Consensus 199 ~~ 200 (237)
T 3bor_A 199 QK 200 (237)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 15
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.83 E-value=6.6e-22 Score=170.26 Aligned_cols=139 Identities=16% Similarity=0.259 Sum_probs=103.2
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCL 81 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~ 81 (252)
+.+++|+|+++++|||||||++|++|+++.+.... .+.++||++|||+|+.|+.+.++.++...+ +.+..
T Consensus 72 ~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~--~~~~~ 141 (414)
T 3eiq_A 72 LPCIKGYDVIAQAQSGTGKTATFAISILQQIELDL--------KATQALVLAPTRELAQQIQKVVMALGDYMG--ASCHA 141 (414)
T ss_dssp HHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTS--------CSCCEEEECSSHHHHHHHHHHHHHHGGGSC--CCEEE
T ss_pred HHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcC--------CceeEEEEeChHHHHHHHHHHHHHHhcccC--ceEEE
Confidence 56789999999999999999999999998875432 366899999999999999999999998877 78888
Q ss_pred eeCCcccCcchhhhh-hcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 82 AIGGVPMNQSLDVIK-KGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~-~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
++||.+...+.+.+. .+++|. + ++|+++.+...+....+.. +.++|.||+ +.+.+.++...+...+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~ii--v----~T~~~l~~~l~~~~~~~~~-~~~vViDEa-----h~~~~~~~~~~~~~~~~ 209 (414)
T 3eiq_A 142 CIGGTNVRAEVQKLQMEAPHII--V----GTPGRVFDMLNRRYLSPKY-IKMFVLDEA-----DEMLSRGFKDQIYDIFQ 209 (414)
T ss_dssp CCCCTTHHHHHHHHTTTCCSEE--E----ECHHHHHHHHHHTSSCSTT-CCEEEECSH-----HHHHHTTTHHHHHHHHT
T ss_pred EECCcchHHHHHHHhcCCCCEE--E----ECHHHHHHHHHcCCccccc-CcEEEEECH-----HHhhccCcHHHHHHHHH
Confidence 899987776666655 344541 2 3366665544433323333 789999997 56666666666665554
Q ss_pred HC
Q psy7786 161 AK 162 (252)
Q Consensus 161 ~~ 162 (252)
..
T Consensus 210 ~~ 211 (414)
T 3eiq_A 210 KL 211 (414)
T ss_dssp TS
T ss_pred hC
Confidence 43
No 16
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.83 E-value=3e-22 Score=160.11 Aligned_cols=142 Identities=27% Similarity=0.373 Sum_probs=103.1
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCL 81 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~ 81 (252)
+.+++|+|+++++|||||||++|++|+++.+..... ....++++||++|||+|+.|+++.++.++...+ +++..
T Consensus 57 ~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~----~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~--~~~~~ 130 (236)
T 2pl3_A 57 GLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW----TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHD--FSAGL 130 (236)
T ss_dssp HHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC----CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSS--CCEEE
T ss_pred HHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc----cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCC--eeEEE
Confidence 567899999999999999999999999998875321 112467899999999999999999999987766 78888
Q ss_pred eeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHHH
Q psy7786 82 AIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEA 161 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~~ 161 (252)
++||.+...+...+. +++|. | ++|+++.....+........+.++|.||+ +.+.+.++...+...+..
T Consensus 131 ~~g~~~~~~~~~~~~-~~~ii--v----~Tp~~l~~~l~~~~~~~~~~~~~lViDEa-----h~~~~~~~~~~~~~i~~~ 198 (236)
T 2pl3_A 131 IIGGKDLKHEAERIN-NINIL--V----CTPGRLLQHMDETVSFHATDLQMLVLDEA-----DRILDMGFADTMNAVIEN 198 (236)
T ss_dssp ECCC--CHHHHHHHT-TCSEE--E----ECHHHHHHHHHHCSSCCCTTCCEEEETTH-----HHHHHTTTHHHHHHHHHT
T ss_pred EECCCCHHHHHHhCC-CCCEE--E----ECHHHHHHHHHhcCCcccccccEEEEeCh-----HHHhcCCcHHHHHHHHHh
Confidence 999987766655553 44541 2 34777655433322122234789999997 777777887777655544
No 17
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.83 E-value=5.2e-22 Score=170.30 Aligned_cols=120 Identities=22% Similarity=0.340 Sum_probs=89.8
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCL 81 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~ 81 (252)
+.+++|+|+++++|||||||++|++|+++.+.... .+.++||++||++|+.|+.+.++++....+ +++..
T Consensus 53 ~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~--~~~~~ 122 (400)
T 1s2m_A 53 PVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL--------NKIQALIMVPTRELALQTSQVVRTLGKHCG--ISCMV 122 (400)
T ss_dssp HHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTS--------CSCCEEEECSSHHHHHHHHHHHHHHTTTTT--CCEEE
T ss_pred HHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhcc--------CCccEEEEcCCHHHHHHHHHHHHHHhcccC--ceEEE
Confidence 45778999999999999999999999998764332 356899999999999999999999988776 78888
Q ss_pred eeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 82 AIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
.+|+.....+...+..+.+|. + ++|+++.....+....+. .+.++|.||+
T Consensus 123 ~~g~~~~~~~~~~~~~~~~Iv--v----~T~~~l~~~~~~~~~~~~-~~~~vIiDEa 172 (400)
T 1s2m_A 123 TTGGTNLRDDILRLNETVHIL--V----GTPGRVLDLASRKVADLS-DCSLFIMDEA 172 (400)
T ss_dssp ECSSSCHHHHHHHTTSCCSEE--E----ECHHHHHHHHHTTCSCCT-TCCEEEEESH
T ss_pred EeCCcchHHHHHHhcCCCCEE--E----EchHHHHHHHHhCCcccc-cCCEEEEeCc
Confidence 899877666555555555551 2 346666443333222233 3788999986
No 18
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.83 E-value=2.4e-22 Score=157.20 Aligned_cols=139 Identities=18% Similarity=0.261 Sum_probs=103.5
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCL 81 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~ 81 (252)
+.+++|+|+++++|||||||++|++|+++.+.... .++++||++|||+|+.|+++.++.+.+..+ ++++..
T Consensus 35 ~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~ 105 (206)
T 1vec_A 35 PIALSGRDILARAKNGTGKSGAYLIPLLERLDLKK--------DNIQAMVIVPTRELALQVSQICIQVSKHMG-GAKVMA 105 (206)
T ss_dssp HHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTS--------CSCCEEEECSCHHHHHHHHHHHHHHTTTSS-SCCEEE
T ss_pred HHHccCCCEEEECCCCCchHHHHHHHHHHHhcccC--------CCeeEEEEeCcHHHHHHHHHHHHHHHhhcC-CceEEE
Confidence 56789999999999999999999999998774432 367899999999999999999999988763 378888
Q ss_pred eeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHHH
Q psy7786 82 AIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEA 161 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~~ 161 (252)
.+|+.+..++...+..+++|. + ++|+++.....+....+. .+.++|.||+ +.+.+.++...+...+..
T Consensus 106 ~~g~~~~~~~~~~~~~~~~i~--v----~T~~~l~~~~~~~~~~~~-~~~~lViDEa-----h~~~~~~~~~~l~~i~~~ 173 (206)
T 1vec_A 106 TTGGTNLRDDIMRLDDTVHVV--I----ATPGRILDLIKKGVAKVD-HVQMIVLDEA-----DKLLSQDFVQIMEDIILT 173 (206)
T ss_dssp ECSSSCHHHHHHHTTSCCSEE--E----ECHHHHHHHHHTTCSCCT-TCCEEEEETH-----HHHTSTTTHHHHHHHHHH
T ss_pred EeCCccHHHHHHhcCCCCCEE--E----eCHHHHHHHHHcCCcCcc-cCCEEEEECh-----HHhHhhCcHHHHHHHHHh
Confidence 999988776666666666652 2 336665444333222233 4789999997 667776776666555543
No 19
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.83 E-value=2.5e-22 Score=176.43 Aligned_cols=135 Identities=22% Similarity=0.287 Sum_probs=92.5
Q ss_pred CcccCC--CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcce
Q psy7786 2 VTYRNS--RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRT 79 (252)
Q Consensus 2 ~~~~~g--~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~ 79 (252)
|.+++| +|++++||||||||++|++|+++.+.... .++++||++|||+||.|+++.++.+.+..+ .+.+
T Consensus 124 ~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~--------~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~-~~~~ 194 (479)
T 3fmp_B 124 PLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN--------KYPQCLCLSPTYELALQTGKVIEQMGKFYP-ELKL 194 (479)
T ss_dssp HHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTS--------CSCCEEEECSSHHHHHHHHHHHHHHHTTST-TCCE
T ss_pred HHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcC--------CCCcEEEEeChHHHHHHHHHHHHHHHhhCC-CceE
Confidence 456666 99999999999999999999998764432 366899999999999999999999988765 3777
Q ss_pred eeeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCccccccc-CCCCHHHHHH
Q psy7786 80 CLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRL-MKLPESLVRA 158 (252)
Q Consensus 80 ~~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~-~~l~~~l~~~ 158 (252)
....|+....... +.+.+|. | ++|+++.++..+........+.++|.||+ +.+.+ .++...+...
T Consensus 195 ~~~~~~~~~~~~~---~~~~~Iv--v----~Tp~~l~~~l~~~~~~~~~~~~~iViDEa-----h~~~~~~~~~~~~~~i 260 (479)
T 3fmp_B 195 AYAVRGNKLERGQ---KISEQIV--I----GTPGTVLDWCSKLKFIDPKKIKVFVLDEA-----DVMIATQGHQDQSIRI 260 (479)
T ss_dssp EEESTTCCCCTTC---CCCCSEE--E----ECHHHHHHHHTTSCCCCGGGCCEEEECCH-----HHHHTSTTHHHHHHHH
T ss_pred EEEeCCccccccc---cCCCCEE--E----ECchHHHHHHHhcCCcCcccCCEEEEECH-----HHHhhcCCcHHHHHHH
Confidence 7777776554332 2233441 2 34666654443321111235889999996 55544 4555555433
Q ss_pred H
Q psy7786 159 L 159 (252)
Q Consensus 159 l 159 (252)
+
T Consensus 261 ~ 261 (479)
T 3fmp_B 261 Q 261 (479)
T ss_dssp H
T ss_pred H
Confidence 3
No 20
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.82 E-value=2.3e-21 Score=165.67 Aligned_cols=138 Identities=20% Similarity=0.292 Sum_probs=98.5
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCL 81 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~ 81 (252)
+.+++|+|+++++|||||||++|++|+++.+.... .+.++||++||++|+.|+.+.++++.+..+ ++++..
T Consensus 40 ~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~--------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~~~ 110 (391)
T 1xti_A 40 PQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT--------GQVSVLVMCHTRELAFQISKEYERFSKYMP-NVKVAV 110 (391)
T ss_dssp HHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCT--------TCCCEEEECSCHHHHHHHHHHHHHHTTTCT-TCCEEE
T ss_pred HHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccC--------CCeeEEEECCCHHHHHHHHHHHHHHHhhCC-CeEEEE
Confidence 56788999999999999999999999998764322 356899999999999999999999988763 388899
Q ss_pred eeCCcccCcchhhhhhc-ccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCccccccc-CCCCHHHHHHH
Q psy7786 82 AIGGVPMNQSLDVIKKG-IQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRL-MKLPESLVRAL 159 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~~~-~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~-~~l~~~l~~~l 159 (252)
++|+.+...+.+.+.++ ++|. + ++|+++..........+. .+.++|.||+ +.+.+ .++...+...+
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~ii--v----~T~~~l~~~~~~~~~~~~-~~~~vViDEa-----H~~~~~~~~~~~~~~~~ 178 (391)
T 1xti_A 111 FFGGLSIKKDEEVLKKNCPHIV--V----GTPGRILALARNKSLNLK-HIKHFILDEC-----DKMLEQLDMRRDVQEIF 178 (391)
T ss_dssp ECTTSCHHHHHHHHHHSCCSEE--E----ECHHHHHHHHHTTSSCCT-TCSEEEECSH-----HHHTSSHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHhcCCCCEE--E----ECHHHHHHHHHcCCcccc-ccCEEEEeCH-----HHHhhccchHHHHHHHH
Confidence 99998877766666654 3441 2 336666543333222223 4788999996 44443 34445554444
Q ss_pred H
Q psy7786 160 E 160 (252)
Q Consensus 160 ~ 160 (252)
.
T Consensus 179 ~ 179 (391)
T 1xti_A 179 R 179 (391)
T ss_dssp H
T ss_pred h
Confidence 3
No 21
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.82 E-value=1.1e-21 Score=156.19 Aligned_cols=138 Identities=23% Similarity=0.240 Sum_probs=102.4
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCL 81 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~ 81 (252)
+.+++|+|+++++|||||||++|++|+++.+.... .+.++||++|||||+.|+++.++.++.... ++++..
T Consensus 56 ~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~--------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~~~~ 126 (230)
T 2oxc_A 56 PLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLEN--------LSTQILILAPTREIAVQIHSVITAIGIKME-GLECHV 126 (230)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTS--------CSCCEEEECSSHHHHHHHHHHHHHHTTTST-TCCEEE
T ss_pred HHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcC--------CCceEEEEeCCHHHHHHHHHHHHHHhcccC-CceEEE
Confidence 56789999999999999999999999998875432 367899999999999999999999987652 378888
Q ss_pred eeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCC-CCHHHHHHHH
Q psy7786 82 AIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMK-LPESLVRALE 160 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~-l~~~l~~~l~ 160 (252)
++||.+...+.+.++ +++|. + ++|+++..........+. .++++|.||+ +.+.+.+ +...+...+.
T Consensus 127 ~~g~~~~~~~~~~~~-~~~Ii--v----~Tp~~l~~~~~~~~~~~~-~~~~lViDEa-----h~~~~~~~~~~~~~~i~~ 193 (230)
T 2oxc_A 127 FIGGTPLSQDKTRLK-KCHIA--V----GSPGRIKQLIELDYLNPG-SIRLFILDEA-----DKLLEEGSFQEQINWIYS 193 (230)
T ss_dssp ECTTSCHHHHHHHTT-SCSEE--E----ECHHHHHHHHHTTSSCGG-GCCEEEESSH-----HHHHSTTSSHHHHHHHHH
T ss_pred EeCCCCHHHHHHhcc-CCCEE--E----ECHHHHHHHHhcCCcccc-cCCEEEeCCc-----hHhhcCcchHHHHHHHHH
Confidence 999977766555543 45541 2 347776654433332333 4789999997 7777776 7776655554
Q ss_pred H
Q psy7786 161 A 161 (252)
Q Consensus 161 ~ 161 (252)
.
T Consensus 194 ~ 194 (230)
T 2oxc_A 194 S 194 (230)
T ss_dssp H
T ss_pred h
Confidence 4
No 22
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.82 E-value=2.9e-21 Score=183.42 Aligned_cols=137 Identities=14% Similarity=0.164 Sum_probs=103.0
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.+++|+|++++||||||||++|++|+++.+. .+.++||++||||||.|+++.++.++ ..+ +++.
T Consensus 87 i~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~-----------~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~--i~v~ 152 (1104)
T 4ddu_A 87 AKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-----------KGKKSALVFPTVTLVKQTLERLQKLA-DEK--VKIF 152 (1104)
T ss_dssp HHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT-----------TTCCEEEEESSHHHHHHHHHHHHTTS-CTT--SCEE
T ss_pred HHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh-----------cCCeEEEEechHHHHHHHHHHHHHhh-CCC--CeEE
Confidence 467899999999999999999988888887661 36789999999999999999999987 444 8999
Q ss_pred eeeCCccc---Ccchhhhhhc-ccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC--CCCc---cccccc-CC
Q psy7786 81 LAIGGVPM---NQSLDVIKKG-IQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD--VPPA---CCSFRL-MK 150 (252)
Q Consensus 81 ~~~g~~~~---~~~~~~l~~~-~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~--~~~~---~~~~~~-~~ 150 (252)
.++||.+. ..+.+.+.++ ++|. |. ||+++.++... ..+ ..+.++|.||+ +... .+++.+ +|
T Consensus 153 ~l~Gg~~~~er~~~~~~l~~g~~~Il--V~----Tp~rL~~~l~~--l~~-~~l~~lViDEaH~l~~~~r~~Dr~L~~~g 223 (1104)
T 4ddu_A 153 GFYSSMKKEEKEKFEKSFEEDDYHIL--VF----STQFVSKNREK--LSQ-KRFDFVFVDDVDAVLKASRNIDTLLMMVG 223 (1104)
T ss_dssp EECTTCCTTHHHHHHHHHHTSCCSEE--EE----EHHHHHHSHHH--HHT-SCCSEEEESCHHHHTTSSHHHHHHHHTSS
T ss_pred EEeCCCCHHHHHHHHHHHhCCCCCEE--EE----CHHHHHHHHHh--hcc-cCcCEEEEeCCCccccccccchhhhHhcC
Confidence 99999888 5556666665 6763 33 48888776653 223 35899999996 1111 144556 88
Q ss_pred CCHH-HHHHHH
Q psy7786 151 LPES-LVRALE 160 (252)
Q Consensus 151 l~~~-l~~~l~ 160 (252)
|.++ +...+.
T Consensus 224 f~~~~i~~il~ 234 (1104)
T 4ddu_A 224 IPEEIIRKAFS 234 (1104)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 9988 544444
No 23
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.82 E-value=2e-20 Score=166.64 Aligned_cols=123 Identities=15% Similarity=0.105 Sum_probs=97.3
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCL 81 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~ 81 (252)
+.+++|+|+++++|||||||++|++|+++.+..... ..+.++||++||++|+.|+.+.++++....+ +++..
T Consensus 14 ~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~--~~~~~ 85 (555)
T 3tbk_A 14 LPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC------GQKGKVVFFANQIPVYEQQATVFSRYFERLG--YNIAS 85 (555)
T ss_dssp HHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS------SCCCCEEEECSSHHHHHHHHHHHHHHHHTTT--CCEEE
T ss_pred HHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc------CCCCEEEEEeCCHHHHHHHHHHHHHHhccCC--cEEEE
Confidence 567899999999999999999999999998865431 1366899999999999999999999998877 88999
Q ss_pred eeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 82 AIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
++|+.+...+.+.+.++++|. | ++|+++..............+.++|.||+
T Consensus 86 ~~g~~~~~~~~~~~~~~~~i~--v----~T~~~l~~~~~~~~~~~~~~~~~vViDEa 136 (555)
T 3tbk_A 86 ISGATSDSVSVQHIIEDNDII--I----LTPQILVNNLNNGAIPSLSVFTLMIFDEC 136 (555)
T ss_dssp ECTTTGGGSCHHHHHHHCSEE--E----ECHHHHHHHHHTSSSCCGGGCSEEEETTG
T ss_pred EcCCCcchhhHHHHhcCCCEE--E----ECHHHHHHHHhcCcccccccCCEEEEECc
Confidence 999998888877777777762 2 34777766554433312234789999996
No 24
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.82 E-value=2.5e-20 Score=169.17 Aligned_cols=114 Identities=18% Similarity=0.159 Sum_probs=88.0
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.+++|+ +++++||||||+||.+|++...+. +.+++||+||||||.|+.+++..+.+++| +++.
T Consensus 92 ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~-----------g~~vlVltptreLA~qd~e~~~~l~~~lg--l~v~ 156 (844)
T 1tf5_A 92 GVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT-----------GKGVHVVTVNEYLASRDAEQMGKIFEFLG--LTVG 156 (844)
T ss_dssp HHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT-----------SSCEEEEESSHHHHHHHHHHHHHHHHHTT--CCEE
T ss_pred hHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHHHHhhcC--CeEE
Confidence 46788999 999999999999999999854322 55799999999999999999999999998 8999
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccc-----cCCCh--hHHHHHhhhhceeeccCC
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCI-----LSLPD--QVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l-----~~~~~--~~~~~l~~~~~~~V~de~ 138 (252)
+++||.+.. .+....++|| +|+||+++ .+... .....+ +.++++|.||+
T Consensus 157 ~i~gg~~~~--~r~~~~~~dI------v~gTpgrlgfD~L~D~m~~~~~~l~l-r~~~~lVlDEa 212 (844)
T 1tf5_A 157 LNLNSMSKD--EKREAYAADI------TYSTNNELGFDYLRDNMVLYKEQMVQ-RPLHFAVIDEV 212 (844)
T ss_dssp ECCTTSCHH--HHHHHHHSSE------EEEEHHHHHHHHHHHTTCSSGGGCCC-CCCCEEEEETH
T ss_pred EEeCCCCHH--HHHHhcCCCE------EEECchhhhHHHHHHhhhcchhhhcc-cCCCEEEECch
Confidence 999997654 3444557887 34458888 43322 111223 34889999986
No 25
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.81 E-value=9e-22 Score=156.01 Aligned_cols=137 Identities=16% Similarity=0.279 Sum_probs=95.3
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCL 81 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~ 81 (252)
+.+++|+|+++++|||||||++|++|+++.+.... .+.++||++|||+|+.|+++.++.+....+ +++..
T Consensus 46 ~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~--------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~--~~~~~ 115 (224)
T 1qde_A 46 MPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV--------KAPQALMLAPTRELALQIQKVVMALAFHMD--IKVHA 115 (224)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTC--------CSCCEEEECSSHHHHHHHHHHHHHHTTTSC--CCEEE
T ss_pred HHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccC--------CCceEEEEECCHHHHHHHHHHHHHHhcccC--ceEEE
Confidence 56789999999999999999999999998875432 367899999999999999999999988776 78888
Q ss_pred eeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHHH
Q psy7786 82 AIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEA 161 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~~ 161 (252)
++|+.+..++.+.+.+ ++|. + ++|+++.....+....+. .+.++|.||+ +.+.+.++...+...+..
T Consensus 116 ~~g~~~~~~~~~~~~~-~~ii--v----~Tp~~l~~~~~~~~~~~~-~~~~iViDEa-----h~~~~~~~~~~l~~i~~~ 182 (224)
T 1qde_A 116 CIGGTSFVEDAEGLRD-AQIV--V----GTPGRVFDNIQRRRFRTD-KIKMFILDEA-----DEMLSSGFKEQIYQIFTL 182 (224)
T ss_dssp ECC----------CTT-CSEE--E----ECHHHHHHHHHTTSSCCT-TCCEEEEETH-----HHHHHTTCHHHHHHHHHH
T ss_pred EeCCcchHHHHhcCCC-CCEE--E----ECHHHHHHHHHhCCcchh-hCcEEEEcCh-----hHHhhhhhHHHHHHHHHh
Confidence 9999887766665554 4441 2 236665543333222223 3789999997 667777777776655544
No 26
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.81 E-value=3.4e-21 Score=182.76 Aligned_cols=132 Identities=17% Similarity=0.227 Sum_probs=104.1
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCc---
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPL--- 77 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~--- 77 (252)
||.+++|+|++++||||||||+ |.+|++..+.. .++++||++||||||.|+++.++.++..++ +
T Consensus 65 i~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~----------~~~~~lil~PtreLa~Q~~~~l~~l~~~~~--i~~~ 131 (1054)
T 1gku_B 65 AKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL----------KGKRCYVIFPTSLLVIQAAETIRKYAEKAG--VGTE 131 (1054)
T ss_dssp HHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT----------TSCCEEEEESCHHHHHHHHHHHHHHHTTTC--CSGG
T ss_pred HHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh----------cCCeEEEEeccHHHHHHHHHHHHHHHhhcC--CCcc
Confidence 4678899999999999999998 99999988754 257899999999999999999999998877 6
Q ss_pred -ceeeeeCCcccCcc---hhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCH
Q psy7786 78 -RTCLAIGGVPMNQS---LDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPE 153 (252)
Q Consensus 78 -~~~~~~g~~~~~~~---~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~ 153 (252)
++..++||.+...+ .+.+++ ++|. |. ||+++.++..+ +. .+.++|.||+ +.+.+ +..
T Consensus 132 ~~v~~~~Gg~~~~~~~~~~~~l~~-~~Il--V~----TP~~L~~~l~~----L~-~l~~lViDEa-----h~~l~--~~~ 192 (1054)
T 1gku_B 132 NLIGYYHGRIPKREKENFMQNLRN-FKIV--IT----TTQFLSKHYRE----LG-HFDFIFVDDV-----DAILK--ASK 192 (1054)
T ss_dssp GSEEECCSSCCSHHHHHHHHSGGG-CSEE--EE----EHHHHHHCSTT----SC-CCSEEEESCH-----HHHHT--STH
T ss_pred ceEEEEeCCCChhhHHHHHhhccC-CCEE--EE----cHHHHHHHHHH----hc-cCCEEEEeCh-----hhhhh--ccc
Confidence 88899999887664 334444 6652 33 48888887766 33 4889999997 66666 466
Q ss_pred HHHHHHHHCCC
Q psy7786 154 SLVRALEAKGI 164 (252)
Q Consensus 154 ~l~~~l~~~~~ 164 (252)
.+...+...++
T Consensus 193 ~~~~i~~~lgf 203 (1054)
T 1gku_B 193 NVDKLLHLLGF 203 (1054)
T ss_dssp HHHHHHHHTTE
T ss_pred cHHHHHHHhCc
Confidence 77666666653
No 27
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.80 E-value=1.5e-20 Score=161.53 Aligned_cols=136 Identities=22% Similarity=0.286 Sum_probs=92.0
Q ss_pred CcccCC--CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcce
Q psy7786 2 VTYRNS--RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRT 79 (252)
Q Consensus 2 ~~~~~g--~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~ 79 (252)
|.+++| +|++++||||||||++|++|+++.+.... .+.++||++|||+|+.|+++.++++.+..+ ++++
T Consensus 57 ~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~-~~~~ 127 (412)
T 3fht_A 57 PLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPAN--------KYPQCLCLSPTYELALQTGKVIEQMGKFYP-ELKL 127 (412)
T ss_dssp HHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTS--------CSCCEEEECSSHHHHHHHHHHHHHHTTTST-TCCE
T ss_pred HHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcC--------CCCCEEEECCCHHHHHHHHHHHHHHHhhcc-cceE
Confidence 456666 99999999999999999999998875433 366899999999999999999999987764 3777
Q ss_pred eeeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCccccccc-CCCCHHHHHH
Q psy7786 80 CLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRL-MKLPESLVRA 158 (252)
Q Consensus 80 ~~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~-~~l~~~l~~~ 158 (252)
....|+....... ..+.+|. + ++|+++..+..+........+.++|.||+ +.+.+ .++...+...
T Consensus 128 ~~~~~~~~~~~~~---~~~~~iv--v----~T~~~l~~~~~~~~~~~~~~~~~iViDEa-----h~~~~~~~~~~~~~~~ 193 (412)
T 3fht_A 128 AYAVRGNKLERGQ---KISEQIV--I----GTPGTVLDWCSKLKFIDPKKIKVFVLDEA-----DVMIATQGHQDQSIRI 193 (412)
T ss_dssp EEECTTCCCCTTC---CCCCSEE--E----ECHHHHHHHHTTSCSSCGGGCCEEEEETH-----HHHHSTTTTHHHHHHH
T ss_pred EEeecCcchhhhh---cCCCCEE--E----ECchHHHHHHHhcCCcChhhCcEEEEeCH-----HHHhhcCCcHHHHHHH
Confidence 7778876554332 2233431 2 23666544332211111134889999996 55544 4555554433
Q ss_pred HH
Q psy7786 159 LE 160 (252)
Q Consensus 159 l~ 160 (252)
+.
T Consensus 194 ~~ 195 (412)
T 3fht_A 194 QR 195 (412)
T ss_dssp HH
T ss_pred Hh
Confidence 33
No 28
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.80 E-value=2.6e-20 Score=166.07 Aligned_cols=124 Identities=13% Similarity=0.069 Sum_probs=92.2
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
|+.+++|+|+++++|||||||++|++|+++.+..... ..+.++||++||++|+.|+.+.++++....+ +++.
T Consensus 16 i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~------~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~--~~~~ 87 (556)
T 4a2p_A 16 AQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA------GRKAKVVFLATKVPVYEQQKNVFKHHFERQG--YSVQ 87 (556)
T ss_dssp HHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS------SCCCCEEEECSSHHHHHHHHHHHHHHHGGGT--CCEE
T ss_pred HHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc------cCCCeEEEEeCCHHHHHHHHHHHHHHhcccC--ceEE
Confidence 3567899999999999999999999999988865432 1366899999999999999999999998877 8889
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
.++|+.+...+.+.+..+++|. | ++|+++..............+.++|.||+
T Consensus 88 ~~~g~~~~~~~~~~~~~~~~i~--v----~T~~~l~~~~~~~~~~~~~~~~~vViDEa 139 (556)
T 4a2p_A 88 GISGENFSNVSVEKVIEDSDII--V----VTPQILVNSFEDGTLTSLSIFTLMIFDEC 139 (556)
T ss_dssp ECCCC-----CHHHHHHHCSEE--E----ECHHHHHHHHHSSSCCCSTTCSEEEEETG
T ss_pred EEeCCCCcchhHHHhhCCCCEE--E----ECHHHHHHHHHhCcccccccCCEEEEECC
Confidence 9999988887777777777762 2 34777665443332211233789999996
No 29
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.80 E-value=6.2e-21 Score=153.27 Aligned_cols=140 Identities=24% Similarity=0.290 Sum_probs=96.5
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.+++|+|++++||||||||++|++|+++.+.... ..++++||++||||||.|+++.++++....+ +++.
T Consensus 60 i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~-------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~--~~~~ 130 (245)
T 3dkp_A 60 IPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPA-------NKGFRALIISPTRELASQIHRELIKISEGTG--FRIH 130 (245)
T ss_dssp HHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCC-------SSSCCEEEECSSHHHHHHHHHHHHHHTTTSC--CCEE
T ss_pred HHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcc-------cCCceEEEEeCCHHHHHHHHHHHHHHhcccC--ceEE
Confidence 356789999999999999999999999998875322 2467899999999999999999999988777 7777
Q ss_pred eeeCCcccCcch-hhhhhcccccCCccccccCCccccCCChhHH--HHHhhhhceeeccCCCCCccccccc---CCCCHH
Q psy7786 81 LAIGGVPMNQSL-DVIKKGIQYNDPIKTSWRAPRCILSLPDQVH--DIIRRNLRILVEGDDVPPACCSFRL---MKLPES 154 (252)
Q Consensus 81 ~~~g~~~~~~~~-~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~--~~l~~~~~~~V~de~~~~~~~~~~~---~~l~~~ 154 (252)
.+.|+.....+. .....+++|. | ++|+++.++..+.. ..+. .+.++|.||+ +.+.+ .++...
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~I~--v----~Tp~~l~~~l~~~~~~~~~~-~~~~lViDEa-----h~~~~~~~~~~~~~ 198 (245)
T 3dkp_A 131 MIHKAAVAAKKFGPKSSKKFDIL--V----TTPNRLIYLLKQDPPGIDLA-SVEWLVVDES-----DKLFEDGKTGFRDQ 198 (245)
T ss_dssp CCCHHHHHHTTTSTTSCCCCCEE--E----ECHHHHHHHHHSSSCSCCCT-TCCEEEESSH-----HHHHHHC--CHHHH
T ss_pred EEecCccHHHHhhhhhcCCCCEE--E----ECHHHHHHHHHhCCCCcccc-cCcEEEEeCh-----HHhcccccccHHHH
Confidence 777765433322 2223344441 2 23666544433321 1222 3788999996 66655 567677
Q ss_pred HHHHHHH
Q psy7786 155 LVRALEA 161 (252)
Q Consensus 155 l~~~l~~ 161 (252)
+...+..
T Consensus 199 ~~~i~~~ 205 (245)
T 3dkp_A 199 LASIFLA 205 (245)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7666544
No 30
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.80 E-value=1.2e-20 Score=161.25 Aligned_cols=138 Identities=16% Similarity=0.271 Sum_probs=99.6
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCL 81 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~ 81 (252)
+.+++|+|+++++|||||||++|++|+++.+.... .+.++||++||++|+.|+++.++++....+ +++..
T Consensus 53 ~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~--------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~--~~~~~ 122 (394)
T 1fuu_A 53 MPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSV--------KAPQALMLAPTRELALQIQKVVMALAFHMD--IKVHA 122 (394)
T ss_dssp HHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTC--------CSCCEEEECSSHHHHHHHHHHHHHHTTTSC--CCEEE
T ss_pred HHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccC--------CCCCEEEEcCCHHHHHHHHHHHHHHhccCC--eeEEE
Confidence 45778999999999999999999999998875432 367899999999999999999999987776 78888
Q ss_pred eeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHHH
Q psy7786 82 AIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEA 161 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~~ 161 (252)
++|+.+..++...+. +.+|. + ++|+++.....+....+ ..+.++|.||+ +.+.+.++...+...+..
T Consensus 123 ~~g~~~~~~~~~~~~-~~~i~--v----~T~~~l~~~~~~~~~~~-~~~~~vIiDEa-----h~~~~~~~~~~~~~~~~~ 189 (394)
T 1fuu_A 123 CIGGTSFVEDAEGLR-DAQIV--V----GTPGRVFDNIQRRRFRT-DKIKMFILDEA-----DEMLSSGFKEQIYQIFTL 189 (394)
T ss_dssp ECSSCCHHHHHHHHH-HCSEE--E----ECHHHHHHHHHTTSSCC-TTCCEEEEETH-----HHHHHTTCHHHHHHHHHH
T ss_pred EeCCCchHHHHhhcC-CCCEE--E----ECHHHHHHHHHhCCcch-hhCcEEEEECh-----HHhhCCCcHHHHHHHHHh
Confidence 999977665555544 33431 2 23555543332222112 24789999996 566666676766665554
Q ss_pred C
Q psy7786 162 K 162 (252)
Q Consensus 162 ~ 162 (252)
.
T Consensus 190 ~ 190 (394)
T 1fuu_A 190 L 190 (394)
T ss_dssp S
T ss_pred C
Confidence 3
No 31
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.79 E-value=4.6e-21 Score=149.95 Aligned_cols=138 Identities=25% Similarity=0.317 Sum_probs=102.3
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCL 81 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~ 81 (252)
+.+++|+|+++++|||||||++|++|+++.+.... ....++++||++|||+|+.|+++.++.+... +++..
T Consensus 33 ~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~-----~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~----~~~~~ 103 (207)
T 2gxq_A 33 PLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ-----ERGRKPRALVLTPTRELALQVASELTAVAPH----LKVVA 103 (207)
T ss_dssp HHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC-----CTTCCCSEEEECSSHHHHHHHHHHHHHHCTT----SCEEE
T ss_pred HHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc-----ccCCCCcEEEEECCHHHHHHHHHHHHHHhhc----ceEEE
Confidence 56789999999999999999999999998875421 1224678999999999999999999887543 57778
Q ss_pred eeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 82 AIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
++|+.+...+.+.+.+++++. + ++|+++.....+....+. .+.++|.||+ +.+.+.++...+...+.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~i~--v----~T~~~l~~~~~~~~~~~~-~~~~iViDEa-----h~~~~~~~~~~~~~i~~ 170 (207)
T 2gxq_A 104 VYGGTGYGKQKEALLRGADAV--V----ATPGRALDYLRQGVLDLS-RVEVAVLDEA-----DEMLSMGFEEEVEALLS 170 (207)
T ss_dssp ECSSSCSHHHHHHHHHCCSEE--E----ECHHHHHHHHHHTSSCCT-TCSEEEEESH-----HHHHHTTCHHHHHHHHH
T ss_pred EECCCChHHHHHHhhCCCCEE--E----ECHHHHHHHHHcCCcchh-hceEEEEECh-----hHhhccchHHHHHHHHH
Confidence 899988777777777776662 2 347666554443322333 3789999997 66767777776655543
No 32
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.78 E-value=3.2e-21 Score=152.45 Aligned_cols=136 Identities=21% Similarity=0.291 Sum_probs=98.0
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCL 81 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~ 81 (252)
+.+++|+|+++++|||||||++|++|+++.+.... .++++||++|||+|+.|+++.++++.+..+ ++++..
T Consensus 46 ~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~v~~ 116 (220)
T 1t6n_A 46 PQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT--------GQVSVLVMCHTRELAFQISKEYERFSKYMP-NVKVAV 116 (220)
T ss_dssp HHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCT--------TCCCEEEECSCHHHHHHHHHHHHHHTTTST-TCCEEE
T ss_pred HHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccC--------CCEEEEEEeCCHHHHHHHHHHHHHHHhhCC-CceEEE
Confidence 46788999999999999999999999998764321 356899999999999999999999987763 388888
Q ss_pred eeCCcccCcchhhhhhc-ccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCccccccc-CCCCHHHHHH
Q psy7786 82 AIGGVPMNQSLDVIKKG-IQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRL-MKLPESLVRA 158 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~~~-~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~-~~l~~~l~~~ 158 (252)
++||.+...+.+.+.++ +++. + ++|+++..........+. .+.++|.||+ +.+.+ .++...+...
T Consensus 117 ~~g~~~~~~~~~~~~~~~~~i~--v----~T~~~l~~~~~~~~~~~~-~~~~lViDEa-----h~~~~~~~~~~~~~~i 183 (220)
T 1t6n_A 117 FFGGLSIKKDEEVLKKNCPHIV--V----GTPGRILALARNKSLNLK-HIKHFILDEC-----DKMLEQLDMRRDVQEI 183 (220)
T ss_dssp ESCCSCHHHHHHHHHHSCCSEE--E----ECHHHHHHHHHTTSSCCT-TCCEEEEESH-----HHHHSSHHHHHHHHHH
T ss_pred EeCCCChHHHHHHHhcCCCCEE--E----eCHHHHHHHHHhCCCCcc-cCCEEEEcCH-----HHHhcccCcHHHHHHH
Confidence 99998877776666653 3541 2 336666544333222233 4789999996 55543 3444444333
No 33
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.77 E-value=1.9e-19 Score=153.71 Aligned_cols=132 Identities=22% Similarity=0.300 Sum_probs=88.6
Q ss_pred CcccCC--CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcce
Q psy7786 2 VTYRNS--RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRT 79 (252)
Q Consensus 2 ~~~~~g--~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~ 79 (252)
+.+++| +|+++++|||||||++|++|+++.+.... .+.++||++||++|+.|+++.+++++...+ +.+
T Consensus 37 ~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~--------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~--~~~ 106 (395)
T 3pey_A 37 PLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPED--------ASPQAICLAPSRELARQTLEVVQEMGKFTK--ITS 106 (395)
T ss_dssp HHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTC--------CSCCEEEECSSHHHHHHHHHHHHHHTTTSC--CCE
T ss_pred HHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCC--------CCccEEEECCCHHHHHHHHHHHHHHhcccC--eeE
Confidence 445666 99999999999999999999998775432 366899999999999999999999987776 677
Q ss_pred eeeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCccccccc-CCCCHHHHHH
Q psy7786 80 CLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRL-MKLPESLVRA 158 (252)
Q Consensus 80 ~~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~-~~l~~~l~~~ 158 (252)
...+|+...... ..+.+|. + ++|+++.....+....+. .+.++|.||+ +.+.+ .++...+...
T Consensus 107 ~~~~~~~~~~~~----~~~~~ii--v----~T~~~l~~~~~~~~~~~~-~~~~iIiDEa-----h~~~~~~~~~~~~~~~ 170 (395)
T 3pey_A 107 QLIVPDSFEKNK----QINAQVI--V----GTPGTVLDLMRRKLMQLQ-KIKIFVLDEA-----DNMLDQQGLGDQCIRV 170 (395)
T ss_dssp EEESTTSSCTTS----CBCCSEE--E----ECHHHHHHHHHTTCBCCT-TCCEEEEETH-----HHHHHSTTHHHHHHHH
T ss_pred EEEecCchhhhc----cCCCCEE--E----EcHHHHHHHHHcCCcccc-cCCEEEEECh-----hhhcCccccHHHHHHH
Confidence 777776443222 1233431 1 236555443322222223 3788999996 44443 4444444433
Q ss_pred H
Q psy7786 159 L 159 (252)
Q Consensus 159 l 159 (252)
.
T Consensus 171 ~ 171 (395)
T 3pey_A 171 K 171 (395)
T ss_dssp H
T ss_pred H
Confidence 3
No 34
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.77 E-value=4.6e-19 Score=149.83 Aligned_cols=136 Identities=24% Similarity=0.350 Sum_probs=96.7
Q ss_pred CcccCC-CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 2 VTYRNS-RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 2 ~~~~~g-~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
+.+++| +|+++.+|||||||++|++|+++.+... .+.++||++||++|+.|+.+.++++....+ +++.
T Consensus 38 ~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~---------~~~~~lil~P~~~L~~q~~~~~~~~~~~~~--~~v~ 106 (367)
T 1hv8_A 38 PLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN---------NGIEAIILTPTRELAIQVADEIESLKGNKN--LKIA 106 (367)
T ss_dssp HHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS---------SSCCEEEECSCHHHHHHHHHHHHHHHCSSC--CCEE
T ss_pred HHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc---------CCCcEEEEcCCHHHHHHHHHHHHHHhCCCC--ceEE
Confidence 345667 7999999999999999999999776432 367899999999999999999999987665 7888
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
..+|+.....+...+. ..++. + ++|+++..........+. .+.++|.||+ +.+.+.++...+...+.
T Consensus 107 ~~~~~~~~~~~~~~~~-~~~ii--v----~T~~~l~~~~~~~~~~~~-~~~~iIiDEa-----h~~~~~~~~~~~~~~~~ 173 (367)
T 1hv8_A 107 KIYGGKAIYPQIKALK-NANIV--V----GTPGRILDHINRGTLNLK-NVKYFILDEA-----DEMLNMGFIKDVEKILN 173 (367)
T ss_dssp EECTTSCHHHHHHHHH-TCSEE--E----ECHHHHHHHHHTTCSCTT-SCCEEEEETH-----HHHHTTTTHHHHHHHHH
T ss_pred EEECCcchHHHHhhcC-CCCEE--E----ecHHHHHHHHHcCCcccc-cCCEEEEeCc-----hHhhhhchHHHHHHHHH
Confidence 8899877665555554 33441 2 236655443322222223 3788999996 66666667666655554
Q ss_pred H
Q psy7786 161 A 161 (252)
Q Consensus 161 ~ 161 (252)
.
T Consensus 174 ~ 174 (367)
T 1hv8_A 174 A 174 (367)
T ss_dssp T
T ss_pred h
Confidence 4
No 35
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.76 E-value=1.7e-18 Score=158.52 Aligned_cols=122 Identities=15% Similarity=0.121 Sum_probs=95.8
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCL 81 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~ 81 (252)
+.+++|+|+++++|||||||++|.+|+++.+..... ..+.++||++||++|+.|+.+.++++....+ +++..
T Consensus 23 ~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~------~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~--~~v~~ 94 (696)
T 2ykg_A 23 LPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ------GQKGKVVFFANQIPVYEQNKSVFSKYFERHG--YRVTG 94 (696)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT------TCCCCEEEECSSHHHHHHHHHHHHHHTTTTT--CCEEE
T ss_pred HHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc------CCCCeEEEEECCHHHHHHHHHHHHHHhccCC--ceEEE
Confidence 567899999999999999999999999998765431 1236799999999999999999999987666 78889
Q ss_pred eeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHH-HHhhhhceeeccCC
Q psy7786 82 AIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHD-IIRRNLRILVEGDD 138 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~-~l~~~~~~~V~de~ 138 (252)
++|+.+...+.+.+..+.+|. + +||+++......... .+. .+.++|.||+
T Consensus 95 ~~g~~~~~~~~~~~~~~~~Ii--v----~Tp~~L~~~l~~~~~~~l~-~~~~vViDEa 145 (696)
T 2ykg_A 95 ISGATAENVPVEQIVENNDII--I----LTPQILVNNLKKGTIPSLS-IFTLMIFDEC 145 (696)
T ss_dssp ECSSSCSSSCHHHHHHTCSEE--E----ECHHHHHHHHHTTSSCCGG-GCSEEEEETG
T ss_pred EeCCccccccHHHhccCCCEE--E----ECHHHHHHHHhcCcccccc-cccEEEEeCC
Confidence 999988888777777777762 2 348877665444322 233 3789999996
No 36
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.76 E-value=5.8e-19 Score=163.88 Aligned_cols=122 Identities=13% Similarity=0.088 Sum_probs=92.1
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCL 81 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~ 81 (252)
+.+++|+|+++++|||||||++|++|+++.+..... ..+.++||++||++|+.|+.+.++++....+ +++..
T Consensus 258 ~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~------~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~--~~v~~ 329 (797)
T 4a2q_A 258 QPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA------GRKAKVVFLATKVPVYEQQKNVFKHHFERQG--YSVQG 329 (797)
T ss_dssp HHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS------SCCCCEEEECSSHHHHHHHHHHHHHHHGGGT--CCEEE
T ss_pred HHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc------cCCCeEEEEeCCHHHHHHHHHHHHHhcccCC--ceEEE
Confidence 567899999999999999999999999998865421 1366899999999999999999999988777 88999
Q ss_pred eeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHH-HHhhhhceeeccCC
Q psy7786 82 AIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHD-IIRRNLRILVEGDD 138 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~-~l~~~~~~~V~de~ 138 (252)
++|+.+...+.+.+..+++|. | ++|+++......... .+. .+.++|.||+
T Consensus 330 ~~g~~~~~~~~~~~~~~~~Iv--v----~Tp~~l~~~l~~~~~~~~~-~~~~iViDEa 380 (797)
T 4a2q_A 330 ISGENFSNVSVEKVIEDSDII--V----VTPQILVNSFEDGTLTSLS-IFTLMIFDEC 380 (797)
T ss_dssp ECCC-----CHHHHHHTCSEE--E----ECHHHHHHHHHSSSCCCGG-GCSEEEETTG
T ss_pred EeCCcchhhhHHHhhCCCCEE--E----EchHHHHHHHHhccccccc-cCCEEEEECc
Confidence 999998888777777777762 2 347776654443322 233 3789999996
No 37
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.76 E-value=9.1e-19 Score=172.00 Aligned_cols=123 Identities=15% Similarity=0.084 Sum_probs=90.8
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeee
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAI 83 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~ 83 (252)
+.+++|++++||||||||++|.+|+++.+............++.++||++|+|+||+|+++.+++..+..| +++..++
T Consensus 92 l~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~g--i~V~~~t 169 (1724)
T 4f92_B 92 LETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYG--ITVAELT 169 (1724)
T ss_dssp HTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTTT--CCEEECC
T ss_pred HcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHHHHhhCC--CEEEEEE
Confidence 34689999999999999999999999999875443333445688999999999999999999988777777 8999999
Q ss_pred CCcccCcchhhhhhcccccCCccccccCCccccCCChhH--HHHHhhhhceeeccCC
Q psy7786 84 GGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQV--HDIIRRNLRILVEGDD 138 (252)
Q Consensus 84 g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~--~~~l~~~~~~~V~de~ 138 (252)
|+++...+. .++++| +. +||+++..+..+. ...+ +.++++|.||.
T Consensus 170 Gd~~~~~~~---~~~~~I---lV---tTpEkld~llr~~~~~~~l-~~v~~vIiDEv 216 (1724)
T 4f92_B 170 GDHQLCKEE---ISATQI---IV---CTPEKWDIITRKGGERTYT-QLVRLIILDEI 216 (1724)
T ss_dssp SSCSSCCTT---GGGCSE---EE---ECHHHHHHHTTSSTTHHHH-TTEEEEEETTG
T ss_pred CCCCCCccc---cCCCCE---EE---ECHHHHHHHHcCCccchhh-cCcCEEEEecc
Confidence 998765432 234555 22 3466654333221 2233 34899999995
No 38
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.75 E-value=3.6e-19 Score=148.90 Aligned_cols=132 Identities=21% Similarity=0.325 Sum_probs=95.6
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCL 81 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~ 81 (252)
+.+++|+|+++.+|||||||++|++|+++. +.++||++||++|+.|+++.+++++...+ +++..
T Consensus 26 ~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~--------------~~~~liv~P~~~L~~q~~~~~~~~~~~~~--~~~~~ 89 (337)
T 2z0m_A 26 PLMLQGKNVVVRAKTGSGKTAAYAIPILEL--------------GMKSLVVTPTRELTRQVASHIRDIGRYMD--TKVAE 89 (337)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHHHHHHHH--------------TCCEEEECSSHHHHHHHHHHHHHHTTTSC--CCEEE
T ss_pred HHHhcCCCEEEEcCCCCcHHHHHHHHHHhh--------------cCCEEEEeCCHHHHHHHHHHHHHHhhhcC--CcEEE
Confidence 457789999999999999999999998863 34699999999999999999999988777 78888
Q ss_pred eeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHHH
Q psy7786 82 AIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEA 161 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~~ 161 (252)
++|+.+...+...+.+ .+|. + ++|+++..........+. .+.++|.||+ +.+.+.++...+...+..
T Consensus 90 ~~~~~~~~~~~~~~~~-~~i~--v----~T~~~l~~~~~~~~~~~~-~~~~iViDEa-----h~~~~~~~~~~~~~~~~~ 156 (337)
T 2z0m_A 90 VYGGMPYKAQINRVRN-ADIV--V----ATPGRLLDLWSKGVIDLS-SFEIVIIDEA-----DLMFEMGFIDDIKIILAQ 156 (337)
T ss_dssp ECTTSCHHHHHHHHTT-CSEE--E----ECHHHHHHHHHTTSCCGG-GCSEEEEESH-----HHHHHTTCHHHHHHHHHH
T ss_pred EECCcchHHHHhhcCC-CCEE--E----ECHHHHHHHHHcCCcchh-hCcEEEEECh-----HHhhccccHHHHHHHHhh
Confidence 8998776665555543 4441 2 336666543322222233 3788999996 566666666666555554
Q ss_pred C
Q psy7786 162 K 162 (252)
Q Consensus 162 ~ 162 (252)
.
T Consensus 157 ~ 157 (337)
T 2z0m_A 157 T 157 (337)
T ss_dssp C
T ss_pred C
Confidence 3
No 39
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.75 E-value=3.5e-18 Score=162.49 Aligned_cols=125 Identities=13% Similarity=0.098 Sum_probs=93.1
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
|+.+++|+|++++|+||||||++|.+|+++.+.. +.+++|++|||+||+|+++.++.+.. .+.
T Consensus 193 I~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~-----------g~rvlvl~PtraLa~Q~~~~l~~~~~------~Vg 255 (1108)
T 3l9o_A 193 ISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-----------KQRVIYTSPIKALSNQKYRELLAEFG------DVG 255 (1108)
T ss_dssp HHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT-----------TCEEEEEESSHHHHHHHHHHHHHHTS------SEE
T ss_pred HHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc-----------CCeEEEEcCcHHHHHHHHHHHHHHhC------Ccc
Confidence 3567899999999999999999999999988732 56899999999999999998887643 455
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
.++|+.+... ..+|. |. ||+++.++..+....+++ +.++|.||+ +.+.+.++...+...+.
T Consensus 256 lltGd~~~~~-------~~~Il--V~----Tpe~L~~~L~~~~~~l~~-l~lVVIDEa-----H~l~d~~rg~~~e~ii~ 316 (1108)
T 3l9o_A 256 LMTGDITINP-------DAGCL--VM----TTEILRSMLYRGSEVMRE-VAWVIFDEV-----HYMRDKERGVVWEETII 316 (1108)
T ss_dssp EECSSCBCCC-------SCSEE--EE----EHHHHHHHHHHCSSHHHH-EEEEEEETG-----GGTTSHHHHHHHHHHHH
T ss_pred EEeCccccCC-------CCCEE--Ee----ChHHHHHHHHcCcccccc-CCEEEEhhh-----hhccccchHHHHHHHHH
Confidence 6788866432 24442 33 488887766665555555 899999997 66666555555555444
Q ss_pred H
Q psy7786 161 A 161 (252)
Q Consensus 161 ~ 161 (252)
.
T Consensus 317 ~ 317 (1108)
T 3l9o_A 317 L 317 (1108)
T ss_dssp H
T ss_pred h
Confidence 4
No 40
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.74 E-value=2.1e-18 Score=156.80 Aligned_cols=115 Identities=16% Similarity=0.188 Sum_probs=86.9
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
+|.+++|+ +++++||+|||++|.+|++...+. +.+++|++||++||.|+.+++..+.+++| +++.
T Consensus 120 ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~-----------g~~v~VvTpTreLA~Qdae~m~~l~~~lG--Lsv~ 184 (922)
T 1nkt_A 120 AAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA-----------GNGVHIVTVNDYLAKRDSEWMGRVHRFLG--LQVG 184 (922)
T ss_dssp HHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT-----------TSCEEEEESSHHHHHHHHHHHHHHHHHTT--CCEE
T ss_pred HHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh-----------CCCeEEEeCCHHHHHHHHHHHHHHHhhcC--CeEE
Confidence 36778898 999999999999999999765432 44699999999999999999999999998 8999
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccc-cCCChhH-----HHHHhhhhceeeccCC
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCI-LSLPDQV-----HDIIRRNLRILVEGDD 138 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l-~~~~~~~-----~~~l~~~~~~~V~de~ 138 (252)
+++||.+. +.+....++|| +|+||+++ .++.... .....+.++++|.||+
T Consensus 185 ~i~gg~~~--~~r~~~y~~DI------vygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEa 240 (922)
T 1nkt_A 185 VILATMTP--DERRVAYNADI------TYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEV 240 (922)
T ss_dssp ECCTTCCH--HHHHHHHHSSE------EEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTH
T ss_pred EEeCCCCH--HHHHHhcCCCE------EEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeCh
Confidence 99999764 33444556777 34558887 2322211 1112234889999986
No 41
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.73 E-value=1.8e-19 Score=159.40 Aligned_cols=135 Identities=23% Similarity=0.291 Sum_probs=83.7
Q ss_pred CcccCC--CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcce
Q psy7786 2 VTYRNS--RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRT 79 (252)
Q Consensus 2 ~~~~~g--~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~ 79 (252)
+.+++| +|+++++|||||||++|++|+++.+.... .+.++||++||++|+.|+.+.++.+....+ +.+
T Consensus 151 ~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~--------~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~--~~~ 220 (508)
T 3fho_A 151 PLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASV--------PKPQAICLAPSRELARQIMDVVTEMGKYTE--VKT 220 (508)
T ss_dssp HHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTC--------CSCCEEEECSCHHHHHHHHHHHHHHSTTSS--CCE
T ss_pred HHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCC--------CCceEEEEECcHHHHHHHHHHHHHhCCccC--eeE
Confidence 346676 99999999999999999999998875432 356899999999999999999999877665 555
Q ss_pred eeeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCccccccc-CCCCHHHHHH
Q psy7786 80 CLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRL-MKLPESLVRA 158 (252)
Q Consensus 80 ~~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~-~~l~~~l~~~ 158 (252)
....|+...... ....+|. + ++|+++.....+....+. .+.++|.||+ +.+.+ .++...+...
T Consensus 221 ~~~~~~~~~~~~----~~~~~Iv--v----~T~~~l~~~l~~~~~~~~-~~~lIIiDEa-----H~~~~~~~~~~~~~~i 284 (508)
T 3fho_A 221 AFGIKDSVPKGA----KIDAQIV--I----GTPGTVMDLMKRRQLDAR-DIKVFVLDEA-----DNMLDQQGLGDQSMRI 284 (508)
T ss_dssp EC--------------CCCCSEE--E----ECHHHHHHHHHTTCSCCT-TCCEEEECCH-----HHHTTC--CHHHHHHH
T ss_pred EEEeCCcccccc----cCCCCEE--E----ECHHHHHHHHHcCCcccc-CCCEEEEech-----hhhcccCCcHHHHHHH
Confidence 555555332221 1133331 1 235555443322222233 3788999996 44443 4555555544
Q ss_pred HHHC
Q psy7786 159 LEAK 162 (252)
Q Consensus 159 l~~~ 162 (252)
+...
T Consensus 285 ~~~~ 288 (508)
T 3fho_A 285 KHLL 288 (508)
T ss_dssp HHHS
T ss_pred HHhC
Confidence 4443
No 42
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.73 E-value=5.5e-19 Score=160.17 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=88.3
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
+|.+++|+ ++.++||||||++|++|++...+. +.+++|++||||||.|++++++.+.+++| +++.
T Consensus 83 i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~-----------g~~vlVltPTreLA~Q~~e~~~~l~~~lg--l~v~ 147 (853)
T 2fsf_A 83 GMVLNERC--IAEMRTGEGKTLTATLPAYLNALT-----------GKGVHVVTVNDYLAQRDAENNRPLFEFLG--LTVG 147 (853)
T ss_dssp HHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT-----------SSCCEEEESSHHHHHHHHHHHHHHHHHTT--CCEE
T ss_pred cccccCCe--eeeecCCchHHHHHHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHHHHHHHHhcC--CeEE
Confidence 36778898 999999999999999999965432 55799999999999999999999999998 8999
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccc-cCCChhH-----HHHHhhhhceeeccCC
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCI-LSLPDQV-----HDIIRRNLRILVEGDD 138 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l-~~~~~~~-----~~~l~~~~~~~V~de~ 138 (252)
+++||.+. +.+.+..++||. ++||+++ .++.... .....+.++++|.||+
T Consensus 148 ~i~GG~~~--~~r~~~~~~dIv------vgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEa 203 (853)
T 2fsf_A 148 INLPGMPA--PAKREAYAADIT------YGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEV 203 (853)
T ss_dssp ECCTTCCH--HHHHHHHHSSEE------EEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCH
T ss_pred EEeCCCCH--HHHHHhcCCCEE------EECCchhhHHHHHhhhhccHhHhcccCCcEEEECch
Confidence 99999765 345555677773 3448887 3333221 1112245889999996
No 43
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.73 E-value=3.4e-17 Score=145.15 Aligned_cols=123 Identities=19% Similarity=0.244 Sum_probs=85.6
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
|+.+++|+|+++.+|||||||++|.+|++.. ...+||++|+++|+.|+.+.++.+ + +.+.
T Consensus 34 i~~il~g~d~lv~apTGsGKTl~~~lp~l~~--------------~g~~lvi~P~~aL~~q~~~~l~~~----g--i~~~ 93 (523)
T 1oyw_A 34 IDTVLSGRDCLVVMPTGGGKSLCYQIPALLL--------------NGLTVVVSPLISLMKDQVDQLQAN----G--VAAA 93 (523)
T ss_dssp HHHHHTTCCEEEECSCHHHHHHHHHHHHHHS--------------SSEEEEECSCHHHHHHHHHHHHHT----T--CCEE
T ss_pred HHHHHcCCCEEEECCCCcHHHHHHHHHHHHh--------------CCCEEEECChHHHHHHHHHHHHHc----C--CcEE
Confidence 3567899999999999999999999998832 235899999999999999888764 4 6777
Q ss_pred eeeCCcccCcchhhh---hh-cccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCC--CCHH
Q psy7786 81 LAIGGVPMNQSLDVI---KK-GIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMK--LPES 154 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l---~~-~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~--l~~~ 154 (252)
.+.|+.+..++.... .. ..++ ++++|+++.......... ...+.++|.||+ +.+.+.| |.+.
T Consensus 94 ~l~~~~~~~~~~~~~~~~~~~~~~i------lv~Tpe~l~~~~~~~~l~-~~~~~~vViDEa-----H~i~~~g~~fr~~ 161 (523)
T 1oyw_A 94 CLNSTQTREQQLEVMTGCRTGQIRL------LYIAPERLMLDNFLEHLA-HWNPVLLAVDEA-----HCISQWGHDFRPE 161 (523)
T ss_dssp EECTTSCHHHHHHHHHHHHHTCCSE------EEECHHHHTSTTHHHHHT-TSCEEEEEESSG-----GGGCTTSSCCCHH
T ss_pred EEeCCCCHHHHHHHHHHHhcCCCCE------EEECHHHHhChHHHHHHh-hCCCCEEEEeCc-----cccCcCCCccHHH
Confidence 788876655443322 22 2444 234588886543222222 245889999997 5565554 5554
Q ss_pred H
Q psy7786 155 L 155 (252)
Q Consensus 155 l 155 (252)
.
T Consensus 162 ~ 162 (523)
T 1oyw_A 162 Y 162 (523)
T ss_dssp H
T ss_pred H
Confidence 3
No 44
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.73 E-value=3.1e-17 Score=147.08 Aligned_cols=124 Identities=14% Similarity=0.205 Sum_probs=85.4
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
|+.+++|+|+++.+|||+|||++|.+|++.. ..++||++||++|+.|+.+.++.+ | +++.
T Consensus 53 i~~il~g~d~lv~~pTGsGKTl~~~lpal~~--------------~g~~lVisP~~~L~~q~~~~l~~~----g--i~~~ 112 (591)
T 2v1x_A 53 INVTMAGKEVFLVMPTGGGKSLCYQLPALCS--------------DGFTLVICPLISLMEDQLMVLKQL----G--ISAT 112 (591)
T ss_dssp HHHHHTTCCEEEECCTTSCTTHHHHHHHHTS--------------SSEEEEECSCHHHHHHHHHHHHHH----T--CCEE
T ss_pred HHHHHcCCCEEEEECCCChHHHHHHHHHHHc--------------CCcEEEEeCHHHHHHHHHHHHHhc----C--CcEE
Confidence 3567899999999999999999999999741 237999999999999999988876 4 7788
Q ss_pred eeeCCcccCcchhhhh------hcccccCCccccccCCccccCC---ChhHH-HHHhhhhceeeccCCCCCcccccccCC
Q psy7786 81 LAIGGVPMNQSLDVIK------KGIQYNDPIKTSWRAPRCILSL---PDQVH-DIIRRNLRILVEGDDVPPACCSFRLMK 150 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~------~~~~i~~~i~t~~~~p~~l~~~---~~~~~-~~l~~~~~~~V~de~~~~~~~~~~~~~ 150 (252)
.+.|+.+..++..... ...++ ++.+|+++... ..... ......+.++|.||+ +.+.+.|
T Consensus 113 ~l~~~~~~~~~~~~~~~l~~~~~~~~I------lv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEA-----H~is~~g 181 (591)
T 2v1x_A 113 MLNASSSKEHVKWVHAEMVNKNSELKL------IYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEV-----HCCSQWG 181 (591)
T ss_dssp ECCSSCCHHHHHHHHHHHHCTTCCCCE------EEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETG-----GGGSTTC
T ss_pred EEeCCCCHHHHHHHHHHhhcccCCCCE------EEEChhHhhccHHHHHHHHhhhhccCCcEEEEECc-----ccccccc
Confidence 8888877655443332 12333 23457776542 11111 111235788999997 5555554
Q ss_pred --CCHHH
Q psy7786 151 --LPESL 155 (252)
Q Consensus 151 --l~~~l 155 (252)
|.+..
T Consensus 182 ~dfr~~~ 188 (591)
T 2v1x_A 182 HDFRPDY 188 (591)
T ss_dssp TTCCGGG
T ss_pred cccHHHH
Confidence 54443
No 45
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.73 E-value=2.6e-18 Score=161.67 Aligned_cols=122 Identities=13% Similarity=0.088 Sum_probs=91.0
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCL 81 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~ 81 (252)
+.+++|+|++++++||||||++|++|+++.+..... ..+.++||++||++|+.|+++.++++....+ +++..
T Consensus 258 ~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~------~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~--~~v~~ 329 (936)
T 4a2w_A 258 QPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA------GRKAKVVFLATKVPVYEQQKNVFKHHFERQG--YSVQG 329 (936)
T ss_dssp HHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS------SCCCCEEEECSSHHHHHHHHHHHHHHHHTTT--CCEEE
T ss_pred HHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc------cCCCeEEEEeCCHHHHHHHHHHHHHHhcccC--ceEEE
Confidence 457899999999999999999999999877654321 1256799999999999999999999988776 88999
Q ss_pred eeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHH-HHhhhhceeeccCC
Q psy7786 82 AIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHD-IIRRNLRILVEGDD 138 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~-~l~~~~~~~V~de~ 138 (252)
++|+.+...+.+.+..+.+|. | ++|+++......... .+. .+.++|.||+
T Consensus 330 ~~G~~~~~~~~~~~~~~~~Iv--I----~Tp~~L~~~l~~~~~~~l~-~~~liViDEa 380 (936)
T 4a2w_A 330 ISGENFSNVSVEKVIEDSDII--V----VTPQILVNSFEDGTLTSLS-IFTLMIFDEC 380 (936)
T ss_dssp ECCC-----CCHHHHHHCSEE--E----ECHHHHHHHHHSSSCCCGG-GCSEEEEETG
T ss_pred EECCcchhhHHHHhccCCCEE--E----ecHHHHHHHHHcCcccccc-CCCEEEEECc
Confidence 999988887777777777762 2 347777655443322 233 3789999996
No 46
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.73 E-value=9.8e-19 Score=157.39 Aligned_cols=182 Identities=14% Similarity=0.016 Sum_probs=108.8
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||.+++|+|++++||||||||++|++|+++.+.. .+.++||++||||||.|+++.++ + ..+.
T Consensus 180 i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~----------~~~~vLvl~PtreLa~Qi~~~l~------~--~~v~ 241 (618)
T 2whx_A 180 EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK----------RRLRTLILAPTRVVAAEMEEALR------G--LPIR 241 (618)
T ss_dssp GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH----------TTCCEEEEESSHHHHHHHHHHTT------T--SCEE
T ss_pred HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh----------CCCeEEEEcChHHHHHHHHHHhc------C--Ccee
Confidence 5779999999999999999999999999998865 25689999999999999998765 2 2222
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHH--H-----hhhhceeeccCCCCCcccccccCCCCH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDI--I-----RRNLRILVEGDDVPPACCSFRLMKLPE 153 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~--l-----~~~~~~~V~de~~~~~~~~~~~~~l~~ 153 (252)
..++ .+.. + .+|++++++....... + ...+.++|.||+ +.+ ++++..
T Consensus 242 -~~~~--------~l~~-------~----~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEa-----h~~-~~~~~~ 295 (618)
T 2whx_A 242 -YQTP--------AVKS-------D----HTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEA-----HFT-DPCSVA 295 (618)
T ss_dssp -ECCT--------TSSC-------C----CCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEEST-----TCC-SHHHHH
T ss_pred -Eecc--------ccee-------c----cCCCceEEEEChHHHHHHHhccccccCCeEEEEECC-----CCC-CccHHH
Confidence 1111 0100 2 2378887766544322 0 244899999997 554 444444
Q ss_pred HHHHHHHHCCCCCChHHHHhhhhhhhcCC---------cEE-EEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEE
Q psy7786 154 SLVRALEAKGIKKPTPIQVQGIPAALSGR---------DII-GIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG 223 (252)
Q Consensus 154 ~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~---------~~~-~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 223 (252)
.+...+.... ....|...+++++.+. ..+ +.......+ ...++.. +.+ ...++
T Consensus 296 ~~~~i~~~l~---~~~~q~il~SAT~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~ll~~---l~~----------~~~~~ 358 (618)
T 2whx_A 296 ARGYISTRVE---MGEAAAIFMTATPPGSTDPFPQSNSPIEDIEREIPERS-WNTGFDW---ITD----------YQGKT 358 (618)
T ss_dssp HHHHHHHHHH---HTSCEEEEECSSCTTCCCSSCCCSSCEEEEECCCCSSC-CSSSCHH---HHH----------CCSCE
T ss_pred HHHHHHHHhc---ccCccEEEEECCCchhhhhhhccCCceeeecccCCHHH-HHHHHHH---HHh----------CCCCE
Confidence 4433332210 0112333334443221 111 111000011 0111111 111 13479
Q ss_pred EEEcCcHHHHHHHHHHHHHH
Q psy7786 224 LIICPSRELARQTHDIIQYY 243 (252)
Q Consensus 224 LIf~~tr~~a~~i~~~l~~l 243 (252)
||||+|++.|+.+++.|++.
T Consensus 359 LVF~~s~~~a~~l~~~L~~~ 378 (618)
T 2whx_A 359 VWFVPSIKAGNDIANCLRKS 378 (618)
T ss_dssp EEECSSHHHHHHHHHHHHHT
T ss_pred EEEECChhHHHHHHHHHHHc
Confidence 99999999999999999865
No 47
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.73 E-value=2.1e-18 Score=158.53 Aligned_cols=130 Identities=20% Similarity=0.189 Sum_probs=93.1
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeee
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAI 83 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~ 83 (252)
+++|+|++++||||||||++|.+|+++.+... +.+++|++|+|+||.|+++.++++.+. | +++...+
T Consensus 36 ~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----------~~~~l~i~P~raLa~q~~~~~~~l~~~-g--~~v~~~~ 102 (720)
T 2zj8_A 36 ILEGKNALISIPTASGKTLIAEIAMVHRILTQ----------GGKAVYIVPLKALAEEKFQEFQDWEKI-G--LRVAMAT 102 (720)
T ss_dssp GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH----------CSEEEEECSSGGGHHHHHHHTGGGGGG-T--CCEEEEC
T ss_pred hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC----------CCEEEEEcCcHHHHHHHHHHHHHHHhc-C--CEEEEec
Confidence 78899999999999999999999999888643 457999999999999999999766543 5 7888899
Q ss_pred CCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHHH
Q psy7786 84 GGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEA 161 (252)
Q Consensus 84 g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~~ 161 (252)
|+.+...+. + ...+| +++||+++..+..+....+. .+.++|.||. +.+.+......+...+..
T Consensus 103 G~~~~~~~~--~-~~~~I------iv~Tpe~l~~~~~~~~~~l~-~~~~vIiDE~-----H~l~~~~r~~~~~~ll~~ 165 (720)
T 2zj8_A 103 GDYDSKDEW--L-GKYDI------IIATAEKFDSLLRHGSSWIK-DVKILVADEI-----HLIGSRDRGATLEVILAH 165 (720)
T ss_dssp SCSSCCCGG--G-GGCSE------EEECHHHHHHHHHHTCTTGG-GEEEEEEETG-----GGGGCTTTHHHHHHHHHH
T ss_pred CCCCccccc--c-CCCCE------EEECHHHHHHHHHcChhhhh-cCCEEEEECC-----cccCCCcccHHHHHHHHH
Confidence 987655432 2 23444 12347766554443322233 4789999996 555555555555444443
No 48
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.72 E-value=1.1e-17 Score=153.81 Aligned_cols=128 Identities=15% Similarity=0.165 Sum_probs=92.0
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeee
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAI 83 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~ 83 (252)
+.+|+|++++||||||||++|.+|+++.+... +.+++|++|+|+||.|+.+.++.+.. .| +++...+
T Consensus 43 ~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----------~~~il~i~P~r~La~q~~~~~~~~~~-~g--~~v~~~~ 109 (715)
T 2va8_A 43 LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN----------GGKAIYVTPLRALTNEKYLTFKDWEL-IG--FKVAMTS 109 (715)
T ss_dssp TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS----------CSEEEEECSCHHHHHHHHHHHGGGGG-GT--CCEEECC
T ss_pred hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC----------CCeEEEEeCcHHHHHHHHHHHHHhhc-CC--CEEEEEe
Confidence 68899999999999999999999999887642 45899999999999999999976643 35 7888889
Q ss_pred CCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHH
Q psy7786 84 GGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRAL 159 (252)
Q Consensus 84 g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l 159 (252)
|+....++ .+. ..+| .++||+++..+.......+.+ +.++|.||. +.+.+..+...+...+
T Consensus 110 G~~~~~~~--~~~-~~~I------iv~Tpe~l~~~~~~~~~~l~~-~~~vIiDE~-----H~l~~~~~~~~l~~i~ 170 (715)
T 2va8_A 110 GDYDTDDA--WLK-NYDI------IITTYEKLDSLWRHRPEWLNE-VNYFVLDEL-----HYLNDPERGPVVESVT 170 (715)
T ss_dssp SCSSSCCG--GGG-GCSE------EEECHHHHHHHHHHCCGGGGG-EEEEEECSG-----GGGGCTTTHHHHHHHH
T ss_pred CCCCCchh--hcC-CCCE------EEEcHHHHHHHHhCChhHhhc-cCEEEEech-----hhcCCcccchHHHHHH
Confidence 98765543 222 4444 123477776654443333444 889999996 5555555555554444
No 49
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.72 E-value=1.3e-16 Score=127.72 Aligned_cols=127 Identities=36% Similarity=0.639 Sum_probs=111.8
Q ss_pred hHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHH
Q psy7786 121 QVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVL 200 (252)
Q Consensus 121 ~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~ 200 (252)
+....+++..++.+.+++.|++..+|.++++++.+.+.+.+.++..|+++|..+++..+.|+++++.++||+|||.+|++
T Consensus 6 ~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l 85 (242)
T 3fe2_A 6 QEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLL 85 (242)
T ss_dssp CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHH
T ss_pred HHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHH
Confidence 34556667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHhhCCCC
Q psy7786 201 PILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 201 ~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~~~~i~ 250 (252)
|++..+..+.. .....++++||++|||+++.|+++.+++++...++.
T Consensus 86 ~~l~~l~~~~~---~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~ 132 (242)
T 3fe2_A 86 PAIVHINHQPF---LERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLK 132 (242)
T ss_dssp HHHHHHHTSCC---CCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhccc---cccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCce
Confidence 99988765321 122346789999999999999999999999887654
No 50
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.71 E-value=2.9e-18 Score=148.93 Aligned_cols=99 Identities=13% Similarity=0.176 Sum_probs=72.6
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCL 81 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~ 81 (252)
..+++|+|++++||||||||++|++|+++.+.. ++.+++|++||||||.|+++.++.+ + +. .
T Consensus 3 ~~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~----------~~~~~lil~Ptr~La~Q~~~~l~~~----~--v~--~ 64 (440)
T 1yks_A 3 HMLKKGMTTVLDFHPGAGKTRRFLPQILAECAR----------RRLRTLVLAPTRVVLSEMKEAFHGL----D--VK--F 64 (440)
T ss_dssp CTTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH----------TTCCEEEEESSHHHHHHHHHHTTTS----C--EE--E
T ss_pred hHhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh----------cCCeEEEEcchHHHHHHHHHHHhcC----C--eE--E
Confidence 357899999999999999999999999998765 2568999999999999999877622 2 22 1
Q ss_pred eeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHH-------hhhhceeeccCC
Q psy7786 82 AIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDII-------RRNLRILVEGDD 138 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l-------~~~~~~~V~de~ 138 (252)
..+. +. . + ++|+++++......... ..++.++|.||+
T Consensus 65 ~~~~---------~~----~---v----~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEa 108 (440)
T 1yks_A 65 HTQA---------FS----A---H----GSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEA 108 (440)
T ss_dssp ESSC---------CC----C---C----CCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTT
T ss_pred eccc---------ce----e---c----cCCccceeeecccchhHhhhCcccccCccEEEEECc
Confidence 1111 00 0 2 34888888776654331 234899999997
No 51
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.71 E-value=3.4e-18 Score=156.76 Aligned_cols=127 Identities=17% Similarity=0.164 Sum_probs=90.3
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCL 81 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~ 81 (252)
+.+++|+|++++||||||||++|.+|+++.+.. +.+++|++|+|+||.|+.+.++++.. .| +++..
T Consensus 35 ~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----------~~~~l~i~P~r~La~q~~~~~~~~~~-~g--~~v~~ 100 (702)
T 2p6r_A 35 EKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-----------GGKSLYVVPLRALAGEKYESFKKWEK-IG--LRIGI 100 (702)
T ss_dssp HHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-----------TCCEEEEESSHHHHHHHHHHHTTTTT-TT--CCEEE
T ss_pred HHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-----------CCcEEEEeCcHHHHHHHHHHHHHHHh-cC--CEEEE
Confidence 456889999999999999999999999988653 34799999999999999999975543 34 78888
Q ss_pred eeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHH
Q psy7786 82 AIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVR 157 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~ 157 (252)
.+|+....++. + ...+|. + +||+++..+..+....+. .+.++|.||. +.+.+......+..
T Consensus 101 ~~G~~~~~~~~--~-~~~~Ii--v----~Tpe~l~~~l~~~~~~l~-~~~~vIiDE~-----H~l~~~~r~~~~~~ 161 (702)
T 2p6r_A 101 STGDYESRDEH--L-GDCDII--V----TTSEKADSLIRNRASWIK-AVSCLVVDEI-----HLLDSEKRGATLEI 161 (702)
T ss_dssp ECSSCBCCSSC--S-TTCSEE--E----EEHHHHHHHHHTTCSGGG-GCCEEEETTG-----GGGGCTTTHHHHHH
T ss_pred EeCCCCcchhh--c-cCCCEE--E----ECHHHHHHHHHcChhHHh-hcCEEEEeee-----eecCCCCcccHHHH
Confidence 99986655431 2 234441 2 347776554444322344 4889999996 55555555555433
No 52
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.70 E-value=3.8e-18 Score=153.13 Aligned_cols=187 Identities=16% Similarity=0.099 Sum_probs=109.3
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCL 81 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~ 81 (252)
+.+.+|+|++++||||||||++|.+|+++ .+.++||++||||||.|+++.+. +.++ ..+..
T Consensus 227 ~~L~~~~~vlv~ApTGSGKT~a~~l~ll~--------------~g~~vLVl~PTReLA~Qia~~l~---~~~g--~~vg~ 287 (666)
T 3o8b_A 227 AVPQSFQVAHLHAPTGSGKSTKVPAAYAA--------------QGYKVLVLNPSVAATLGFGAYMS---KAHG--IDPNI 287 (666)
T ss_dssp CCCSSCEEEEEECCTTSCTTTHHHHHHHH--------------TTCCEEEEESCHHHHHHHHHHHH---HHHS--CCCEE
T ss_pred HHHHcCCeEEEEeCCchhHHHHHHHHHHH--------------CCCeEEEEcchHHHHHHHHHHHH---HHhC--CCeeE
Confidence 45668899999999999999999999875 14579999999999999987554 4444 45566
Q ss_pred eeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHHH
Q psy7786 82 AIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEA 161 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~~ 161 (252)
.+|+.. +..+.+|. +. +|++++.. .... .++++++|.||+ ++.++++...+...+..
T Consensus 288 ~vG~~~-------~~~~~~Il--V~----TPGrLl~~---~~l~-l~~l~~lVlDEA------H~l~~~~~~~l~~Il~~ 344 (666)
T 3o8b_A 288 RTGVRT-------ITTGAPVT--YS----TYGKFLAD---GGCS-GGAYDIIICDEC------HSTDSTTILGIGTVLDQ 344 (666)
T ss_dssp ECSSCE-------ECCCCSEE--EE----EHHHHHHT---TSCC-TTSCSEEEETTT------TCCSHHHHHHHHHHHHH
T ss_pred EECcEe-------ccCCCCEE--EE----CcHHHHhC---CCcc-cCcccEEEEccc------hhcCccHHHHHHHHHHh
Confidence 677743 23445552 33 48887321 1112 234899999996 44555565555555544
Q ss_pred CCCCCChHHHHhhhhhhhcCC------cEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHH
Q psy7786 162 KGIKKPTPIQVQGIPAALSGR------DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQ 235 (252)
Q Consensus 162 ~~~~~p~~iQ~~~~p~~~~~~------~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~ 235 (252)
........ ...+++++... +.........+. ..+ . ..........+.++||||||++.|++
T Consensus 345 l~~~~~~l--lil~SAT~~~~i~~~~p~i~~v~~~~~~~-i~~----~------~~~~~l~~~~~~~vLVFv~Tr~~ae~ 411 (666)
T 3o8b_A 345 AETAGARL--VVLATATPPGSVTVPHPNIEEVALSNTGE-IPF----Y------GKAIPIEAIRGGRHLIFCHSKKKCDE 411 (666)
T ss_dssp TTTTTCSE--EEEEESSCTTCCCCCCTTEEEEECBSCSS-EEE----T------TEEECGGGSSSSEEEEECSCHHHHHH
T ss_pred hhhcCCce--EEEECCCCCcccccCCcceEEEeecccch-hHH----H------HhhhhhhhccCCcEEEEeCCHHHHHH
Confidence 32211100 01113333221 111000000000 000 0 00000112245689999999999999
Q ss_pred HHHHHHHH
Q psy7786 236 THDIIQYY 243 (252)
Q Consensus 236 i~~~l~~l 243 (252)
+++.|++.
T Consensus 412 la~~L~~~ 419 (666)
T 3o8b_A 412 LAAKLSGL 419 (666)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhC
Confidence 99999864
No 53
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.67 E-value=3.1e-17 Score=150.32 Aligned_cols=122 Identities=15% Similarity=0.077 Sum_probs=90.3
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHH-HHHHHHHHHhCCCCccee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT-HDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~-~~~~~~l~~~~~~~~~~~ 80 (252)
+.+++|+|+++++|||||||++|.+|+++.+...... ..+.++||++||++|+.|+ .+.++.+... + +++.
T Consensus 17 ~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~-----~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~--~~v~ 88 (699)
T 4gl2_A 17 QPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA-----SEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-W--YRVI 88 (699)
T ss_dssp HHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH-----TCCCCBCCEESCSHHHHHHHHHTHHHHHTT-T--SCEE
T ss_pred HHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc-----CCCCeEEEEECCHHHHHHHHHHHHHHHcCc-C--ceEE
Confidence 4578899999999999999999999999988765320 1235799999999999999 9999998765 2 7888
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHH------HHHhhhhceeeccCC
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVH------DIIRRNLRILVEGDD 138 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~------~~l~~~~~~~V~de~ 138 (252)
.++|+.+...+.+.+....+|. | ++|+++.......+ ..+ ..+.++|.||+
T Consensus 89 ~~~g~~~~~~~~~~~~~~~~Il--v----~Tp~~L~~~l~~~~~~~~~~~~~-~~~~lvViDEa 145 (699)
T 4gl2_A 89 GLSGDTQLKISFPEVVKSCDII--I----STAQILENSLLNLENGEDAGVQL-SDFSLIIIDEC 145 (699)
T ss_dssp EEC----CCCCHHHHHHSCSEE--E----EEHHHHHHHTC--------CCCG-GGCSEEEEESG
T ss_pred EEeCCcchhhHHHhhhcCCCEE--E----ECHHHHHHHHhccccccccceec-ccCcEEEEECc
Confidence 9999998888877777777762 3 34888876553221 223 34889999996
No 54
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.67 E-value=1.7e-17 Score=144.85 Aligned_cols=55 Identities=18% Similarity=0.259 Sum_probs=49.4
Q ss_pred cccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~ 67 (252)
.+.+|+|++++||||||||++|++|+++.+.. .+.++||++||||||.|+++.++
T Consensus 17 ~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~----------~~~~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 17 MLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ----------QRLRTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp GGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH----------TTCCEEEEECSHHHHHHHHHHTT
T ss_pred HHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh----------CCCcEEEECchHHHHHHHHHHhc
Confidence 47789999999999999999999999998764 25689999999999999998876
No 55
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.67 E-value=1.9e-16 Score=155.70 Aligned_cols=113 Identities=20% Similarity=0.183 Sum_probs=81.9
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHH-HHHhCCCCcceeeee
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY-YCAALPIPLRTCLAI 83 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~-l~~~~~~~~~~~~~~ 83 (252)
.+++|++++||||||||++|.+|+++.+.... +.+++|++|||+||+|+++.+++ |++.+| +++..++
T Consensus 940 ~~~~nvlv~APTGSGKTliaelail~~l~~~~---------~~kavyi~P~raLa~q~~~~~~~~f~~~~g--~~V~~lt 1008 (1724)
T 4f92_B 940 NSDDNVFVGAPTGSGKTICAEFAILRMLLQSS---------EGRCVYITPMEALAEQVYMDWYEKFQDRLN--KKVVLLT 1008 (1724)
T ss_dssp SCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT---------TCCEEEECSCHHHHHHHHHHHHHHHTTTSC--CCEEECC
T ss_pred cCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC---------CCEEEEEcChHHHHHHHHHHHHHHhchhcC--CEEEEEE
Confidence 35678999999999999999999999987643 45799999999999999988854 666666 8889999
Q ss_pred CCcccCcchhhhhhcccccCCccccccCCccccCCChh--HHHHHhhhhceeeccCC
Q psy7786 84 GGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQ--VHDIIRRNLRILVEGDD 138 (252)
Q Consensus 84 g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~--~~~~l~~~~~~~V~de~ 138 (252)
|+.+.+. +. .++.+|. | +||+++..+..+ ....+. .++++|.||.
T Consensus 1009 Gd~~~~~--~~-~~~~~Ii--V----~TPEkld~llr~~~~~~~l~-~v~lvViDE~ 1055 (1724)
T 4f92_B 1009 GETSTDL--KL-LGKGNII--I----STPEKWDILSRRWKQRKNVQ-NINLFVVDEV 1055 (1724)
T ss_dssp SCHHHHH--HH-HHHCSEE--E----ECHHHHHHHHTTTTTCHHHH-SCSEEEECCG
T ss_pred CCCCcch--hh-cCCCCEE--E----ECHHHHHHHHhCcccccccc-eeeEEEeech
Confidence 9865432 22 2344552 2 247765443322 122344 4899999996
No 56
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.67 E-value=8.9e-16 Score=133.15 Aligned_cols=118 Identities=36% Similarity=0.522 Sum_probs=105.3
Q ss_pred hceeeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhh
Q psy7786 130 LRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQ 209 (252)
Q Consensus 130 ~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~ 209 (252)
+.+-+.+++.|.++.+|.++++++.+++.+.+.++..|+++|..++|..+.|+|++++++||+|||.+|++|++..+...
T Consensus 42 ~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~ 121 (434)
T 2db3_A 42 IPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED 121 (434)
T ss_dssp SCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHS
T ss_pred ceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhc
Confidence 56777888999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred hccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHhhCCCC
Q psy7786 210 ETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 210 ~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~~~~i~ 250 (252)
... ....++++||++|||++|.|+++.+++++...+++
T Consensus 122 ~~~---~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~ 159 (434)
T 2db3_A 122 PHE---LELGRPQVVIVSPTRELAIQIFNEARKFAFESYLK 159 (434)
T ss_dssp CCC---CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCC
T ss_pred ccc---cccCCccEEEEecCHHHHHHHHHHHHHHhccCCcE
Confidence 321 22346789999999999999999999998776543
No 57
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.66 E-value=2.9e-17 Score=148.91 Aligned_cols=100 Identities=13% Similarity=0.156 Sum_probs=70.8
Q ss_pred CCccc------CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCC
Q psy7786 1 MVTYR------NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALP 74 (252)
Q Consensus 1 i~~~~------~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~ 74 (252)
||.++ +|+|++++|+||||||++|++|+++.+.. .+.++||++||||||.|+++.++.+ +
T Consensus 229 Ip~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~----------~~~~~lilaPTr~La~Q~~~~l~~~----~ 294 (673)
T 2wv9_A 229 VPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ----------KRLRTAVLAPTRVVAAEMAEALRGL----P 294 (673)
T ss_dssp -CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH----------TTCCEEEEESSHHHHHHHHHHTTTS----C
T ss_pred hHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh----------CCCcEEEEccHHHHHHHHHHHHhcC----C
Confidence 45566 99999999999999999999999988764 2568999999999999999877632 2
Q ss_pred CCcceeeeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHH-------HhhhhceeeccCC
Q psy7786 75 IPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDI-------IRRNLRILVEGDD 138 (252)
Q Consensus 75 ~~~~~~~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~-------l~~~~~~~V~de~ 138 (252)
+. ...+ .+.. + .+|+++++........ ....+.++|.||+
T Consensus 295 --i~--~~~~---------~l~~-------v----~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEa 341 (673)
T 2wv9_A 295 --VR--YLTP---------AVQR-------E----HSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEA 341 (673)
T ss_dssp --CE--ECCC------------C-------C----CCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEEST
T ss_pred --ee--eecc---------cccc-------c----CCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCC
Confidence 22 1011 1111 2 3488887776654431 1234899999997
No 58
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.5e-16 Score=148.63 Aligned_cols=123 Identities=13% Similarity=0.095 Sum_probs=88.3
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCL 81 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~ 81 (252)
+.+++|+|++++||||||||++|.+|+++.+. .+.++||++|||+|++|+++.++.+.. ++..
T Consensus 96 ~~l~~g~~vLV~apTGSGKTlva~lai~~~l~-----------~g~rvL~l~PtkaLa~Q~~~~l~~~~~------~vgl 158 (1010)
T 2xgj_A 96 SCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-----------NKQRVIYTSPIKALSNQKYRELLAEFG------DVGL 158 (1010)
T ss_dssp HHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH-----------TTCEEEEEESSHHHHHHHHHHHHHHHS------CEEE
T ss_pred HHHHcCCCEEEECCCCCChHHHHHHHHHHHhc-----------cCCeEEEECChHHHHHHHHHHHHHHhC------CEEE
Confidence 45678999999999999999999999988763 256899999999999999999987653 4566
Q ss_pred eeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 82 AIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
++|+.+... ..++. | +||+++.++..+....+++ +.++|.||. +.+.+..........+.
T Consensus 159 ltGd~~~~~-------~~~Iv--V----~Tpe~L~~~L~~~~~~l~~-l~lVViDEa-----H~l~d~~rg~~~e~il~ 218 (1010)
T 2xgj_A 159 MTGDITINP-------DAGCL--V----MTTEILRSMLYRGSEVMRE-VAWVIFDEV-----HYMRDKERGVVWEETII 218 (1010)
T ss_dssp ECSSCEECT-------TCSEE--E----EEHHHHHHHHHHTCTTGGG-EEEEEEETG-----GGGGCTTTHHHHHHHHH
T ss_pred EeCCCccCC-------CCCEE--E----EcHHHHHHHHHcCcchhhc-CCEEEEech-----hhhcccchhHHHHHHHH
Confidence 788866542 23331 3 3477776554443334444 899999997 66666655554444443
No 59
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.65 E-value=1.1e-15 Score=122.54 Aligned_cols=119 Identities=38% Similarity=0.625 Sum_probs=105.8
Q ss_pred HHHhhhhceeeccCCCCCcccccccC----CCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhH
Q psy7786 124 DIIRRNLRILVEGDDVPPACCSFRLM----KLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFV 199 (252)
Q Consensus 124 ~~l~~~~~~~V~de~~~~~~~~~~~~----~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~ 199 (252)
..+++..++.+.+.+.|++..+|.++ ++++.+.+.+.+.|+..|+++|..+++..+.++++++.++||+|||.+|+
T Consensus 5 ~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 5 NFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFS 84 (245)
T ss_dssp HHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred HHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHH
Confidence 45666678899999999999999987 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHhhCCC
Q psy7786 200 LPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPI 249 (252)
Q Consensus 200 ~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~~~~i 249 (252)
+|++..+.... ..++++||++|||++|.|+++.+++++...++
T Consensus 85 l~~l~~l~~~~-------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 127 (245)
T 3dkp_A 85 IPILMQLKQPA-------NKGFRALIISPTRELASQIHRELIKISEGTGF 127 (245)
T ss_dssp HHHHHHHCSCC-------SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHhhcc-------cCCceEEEEeCCHHHHHHHHHHHHHHhcccCc
Confidence 99998775321 24668999999999999999999999876654
No 60
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.65 E-value=6.7e-17 Score=152.43 Aligned_cols=127 Identities=16% Similarity=0.123 Sum_probs=91.0
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
|+.+++|+|+++++|||||||++|.+|+...+. .+.+++|++|||+|+.|+++.++.+.. + +++.
T Consensus 48 I~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~-----------~g~~vlvl~PtraLa~Q~~~~l~~~~~--~--~~v~ 112 (997)
T 4a4z_A 48 VYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR-----------NMTKTIYTSPIKALSNQKFRDFKETFD--D--VNIG 112 (997)
T ss_dssp HHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH-----------TTCEEEEEESCGGGHHHHHHHHHTTC------CCEE
T ss_pred HHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh-----------cCCeEEEEeCCHHHHHHHHHHHHHHcC--C--CeEE
Confidence 356789999999999999999999999887542 256899999999999999998876532 3 7888
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~ 160 (252)
.++|+.+...+ .++. + .||+++.++..+....+.+ +.++|.||+ +.+.+.++.....+.+.
T Consensus 113 ~l~G~~~~~~~-------~~Il--V----~Tpe~L~~~l~~~~~~l~~-l~lvViDEa-----H~l~d~~~g~~~e~ii~ 173 (997)
T 4a4z_A 113 LITGDVQINPD-------ANCL--I----MTTEILRSMLYRGADLIRD-VEFVIFDEV-----HYVNDQDRGVVWEEVII 173 (997)
T ss_dssp EECSSCEECTT-------SSEE--E----EEHHHHHHHHHHTCSGGGG-EEEEEECCT-----TCCCTTCTTCCHHHHHH
T ss_pred EEeCCCccCCC-------CCEE--E----ECHHHHHHHHHhCchhhcC-CCEEEEECc-----ccccccchHHHHHHHHH
Confidence 88998654322 3331 2 3488886655544444444 899999997 56666655555544444
Q ss_pred H
Q psy7786 161 A 161 (252)
Q Consensus 161 ~ 161 (252)
.
T Consensus 174 ~ 174 (997)
T 4a4z_A 174 M 174 (997)
T ss_dssp H
T ss_pred h
Confidence 4
No 61
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.64 E-value=9.8e-17 Score=125.88 Aligned_cols=135 Identities=14% Similarity=0.070 Sum_probs=89.4
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHH-HHHHHHHHHHhCCCCccee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQ-THDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q-~~~~~~~l~~~~~~~~~~~ 80 (252)
+.+++|+|+++.+|||||||++|++|+.+.+...... ..+.++||++||++|+.| +.+.++.+... + +++.
T Consensus 43 ~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~-----~~~~~~lil~p~~~L~~q~~~~~~~~~~~~-~--~~v~ 114 (216)
T 3b6e_A 43 QPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA-----SEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-W--YRVI 114 (216)
T ss_dssp HHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT-----TCCCCEEEEESSHHHHHHHHHHTHHHHHTT-T--SCEE
T ss_pred HHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc-----cCCCcEEEEECHHHHHHHHHHHHHHHHhcc-C--ceEE
Confidence 3467899999999999999999999999887654321 135679999999999999 77888888654 3 7888
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHH-----HHhhhhceeeccCCCCCcccccccCCCCHHH
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHD-----IIRRNLRILVEGDDVPPACCSFRLMKLPESL 155 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~-----~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l 155 (252)
.++|+.....+...+..+++|. + ++|+.+......... .....+.++|.||+ +.+.+.++-..+
T Consensus 115 ~~~g~~~~~~~~~~~~~~~~i~--v----~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEa-----h~~~~~~~~~~~ 183 (216)
T 3b6e_A 115 GLSGDTQLKISFPEVVKSCDII--I----STAQILENSLLNLENGEDAGVQLSDFSLIIIDEC-----HHTNKEAVYNNI 183 (216)
T ss_dssp ECCC---CCCCHHHHHHHCSEE--E----EEHHHHHHHHHC-------CCCGGGCSEEEETTC------------CHHHH
T ss_pred EEeCCcccchhHHhhccCCCEE--E----ECHHHHHHHHhccCcccccccchhcccEEEEECc-----hhhccCCcHHHH
Confidence 8899988877776766666662 2 337776554443321 12234789999997 555444444444
No 62
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.64 E-value=1.2e-16 Score=139.27 Aligned_cols=57 Identities=21% Similarity=0.234 Sum_probs=50.7
Q ss_pred CCcccCCCcE-EEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 1 MVTYRNSRDI-IGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67 (252)
Q Consensus 1 i~~~~~g~d~-~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~ 67 (252)
||.+++|+|+ +++||||||||++|++|+++.+.. .+.++||++||||||.|+++.++
T Consensus 12 i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~----------~~~~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 12 DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL----------RRLRTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp CGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH----------TTCCEEEEESSHHHHHHHHHHTT
T ss_pred HHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh----------cCCcEEEECCCHHHHHHHHHHhc
Confidence 6888999998 999999999999999999987764 25689999999999999998774
No 63
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.63 E-value=2.9e-17 Score=149.18 Aligned_cols=115 Identities=16% Similarity=0.114 Sum_probs=87.3
Q ss_pred CCcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCccee
Q psy7786 1 MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTC 80 (252)
Q Consensus 1 i~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~ 80 (252)
||++++|+ +++++||||||++|.+|++...+. +.+++|++||++||.|.++++..+.+++| +++.
T Consensus 88 ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~-----------G~qv~VvTPTreLA~Qdae~m~~l~~~lG--Lsv~ 152 (997)
T 2ipc_A 88 GAVLHEGK--IAEMKTGEGKTLVATLAVALNALT-----------GKGVHVVTVNDYLARRDAEWMGPVYRGLG--LSVG 152 (997)
T ss_dssp HHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT-----------CSCCEEEESSHHHHHHHHHHHHHHHHTTT--CCEE
T ss_pred cccccCCc--eeeccCCCchHHHHHHHHHHHHHh-----------CCCEEEEeCCHHHHHHHHHHHHHHHHhcC--CeEE
Confidence 46788998 999999999999999999754432 45799999999999999999999999998 8999
Q ss_pred eeeCCcccCcchhhhhhcccccCCccccccCCccc-cCCChhHH------HHHh--hhhceeeccCC
Q psy7786 81 LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCI-LSLPDQVH------DIIR--RNLRILVEGDD 138 (252)
Q Consensus 81 ~~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l-~~~~~~~~------~~l~--~~~~~~V~de~ 138 (252)
+++||.+. +.+....++|| +|+||+++ .++..... ..++ ..++++|.||.
T Consensus 153 ~i~Gg~~~--~~r~~ay~~DI------vyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEa 211 (997)
T 2ipc_A 153 VIQHASTP--AERRKAYLADV------TYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEV 211 (997)
T ss_dssp ECCTTCCH--HHHHHHHTSSE------EEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTH
T ss_pred EEeCCCCH--HHHHHHcCCCE------EEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEech
Confidence 99999763 34444556777 34458887 34333221 1233 14889998885
No 64
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.63 E-value=1.4e-16 Score=138.04 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=45.4
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~ 67 (252)
+|+|+++++|||||||++|++|+++.+.. .+.+++|++|||+||.|+++.++
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~----------~g~~~lvl~Pt~~La~Q~~~~~~ 52 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK----------KRLRTVILAPTRVVASEMYEALR 52 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH----------TTCCEEEEESSHHHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh----------CCCCEEEECcHHHHHHHHHHHhC
Confidence 48999999999999999999999977754 25689999999999999987765
No 65
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.61 E-value=5e-15 Score=122.25 Aligned_cols=109 Identities=28% Similarity=0.412 Sum_probs=93.3
Q ss_pred ceeeccCCCCC---cccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcC--CcEEEEccCCCchhHHhHHHHHHH
Q psy7786 131 RILVEGDDVPP---ACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSG--RDIIGIAFTGSGKTLVFVLPILMF 205 (252)
Q Consensus 131 ~~~V~de~~~~---~~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~--~~~~~~~~~g~gKt~~~~~~~l~~ 205 (252)
.+.|.+.+.+. ...+|.++++++.+++.+...++..|+++|..++|..+.+ +|++++++||+|||.+|++|++..
T Consensus 76 ~v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~ 155 (300)
T 3fmo_B 76 QVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQ 155 (300)
T ss_dssp CEEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHh
Confidence 34444444333 3568999999999999999999999999999999999987 999999999999999999999987
Q ss_pred HHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHhhC
Q psy7786 206 CLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247 (252)
Q Consensus 206 i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~~~ 247 (252)
+... ..++++||++|||++|.|+++.+++++...
T Consensus 156 l~~~--------~~~~~~lil~PtreLa~Q~~~~~~~l~~~~ 189 (300)
T 3fmo_B 156 VEPA--------NKYPQCLCLSPTYELALQTGKVIEQMGKFY 189 (300)
T ss_dssp CCTT--------SCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred hhcc--------CCCceEEEEcCcHHHHHHHHHHHHHHHhhC
Confidence 6432 246789999999999999999999998764
No 66
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.56 E-value=7.3e-15 Score=118.27 Aligned_cols=121 Identities=33% Similarity=0.479 Sum_probs=100.4
Q ss_pred hceeeccCCCCC--cccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHH
Q psy7786 130 LRILVEGDDVPP--ACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCL 207 (252)
Q Consensus 130 ~~~~V~de~~~~--~~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~ 207 (252)
+.+.+.+...+. +..+|.++++++.+.+.+...++..|+++|..+++..+.+++++++++||+|||.+|++|++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~ 86 (253)
T 1wrb_A 7 IPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLV 86 (253)
T ss_dssp CCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHH
Confidence 455666666665 778899999999999999999999999999999999999999999999999999999999998876
Q ss_pred hhhccC-CCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHhhCCCC
Q psy7786 208 EQETKL-PFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 208 ~~~~~~-~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~~~~i~ 250 (252)
...... ......++++||++|||++|.|+++.+++++...++.
T Consensus 87 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 130 (253)
T 1wrb_A 87 CQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLR 130 (253)
T ss_dssp TTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCC
T ss_pred hhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCce
Confidence 543110 0112335789999999999999999999998876543
No 67
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.55 E-value=4.5e-14 Score=121.40 Aligned_cols=119 Identities=29% Similarity=0.432 Sum_probs=101.0
Q ss_pred eeeccCCCCCcccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhc
Q psy7786 132 ILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQET 211 (252)
Q Consensus 132 ~~V~de~~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~ 211 (252)
+-+.++++|++..+|.++++++.+.+.+...++..|+++|..++|..+.++++++.++||+|||.+|++|++..+.....
T Consensus 3 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~ 82 (417)
T 2i4i_A 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (417)
T ss_dssp EEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccc
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999998775431
Q ss_pred c----------CCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHhhCCCC
Q psy7786 212 K----------LPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 212 ~----------~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~~~~i~ 250 (252)
. .......++++||++|||++|.|+++.+++++...+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 131 (417)
T 2i4i_A 83 GEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVR 131 (417)
T ss_dssp CHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCC
T ss_pred cchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCce
Confidence 0 00011234689999999999999999999998776653
No 68
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.55 E-value=1.7e-14 Score=115.06 Aligned_cols=103 Identities=32% Similarity=0.431 Sum_probs=90.6
Q ss_pred CCCcccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCC
Q psy7786 139 VPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPG 218 (252)
Q Consensus 139 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~ 218 (252)
.+++..+|.++++++.+.+.+...++..|+++|..+++..+.++++++.++||+|||.+|+++.+..+... .
T Consensus 25 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~--------~ 96 (237)
T 3bor_A 25 WNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE--------F 96 (237)
T ss_dssp --CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT--------S
T ss_pred CCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc--------C
Confidence 45556789999999999999999999999999999999999999999999999999999999999865432 2
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHHHHhhCCC
Q psy7786 219 EGPYGLIICPSRELARQTHDIIQYYCAALPI 249 (252)
Q Consensus 219 ~~~~~LIf~~tr~~a~~i~~~l~~l~~~~~i 249 (252)
.+.++||++|||+++.|+++.+++++...++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 127 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGA 127 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCc
Confidence 3568999999999999999999999876554
No 69
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.54 E-value=5e-14 Score=113.22 Aligned_cols=100 Identities=40% Similarity=0.604 Sum_probs=90.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcE
Q psy7786 143 CCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPY 222 (252)
Q Consensus 143 ~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~ 222 (252)
..+|.++++++.+.+.+.+.++..|+++|..+++..+.++++++.++||+|||.+|+++++..+.... .+++
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~--------~~~~ 113 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP--------QRLF 113 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC--------CSSC
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC--------CCce
Confidence 45799999999999999999999999999999999999999999999999999999999998876532 3567
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhCCCC
Q psy7786 223 GLIICPSRELARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 223 ~LIf~~tr~~a~~i~~~l~~l~~~~~i~ 250 (252)
+||++|||+++.|+++.+++++...++.
T Consensus 114 ~lil~Ptr~L~~q~~~~~~~~~~~~~~~ 141 (249)
T 3ber_A 114 ALVLTPTRELAFQISEQFEALGSSIGVQ 141 (249)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHGGGTCC
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccCCee
Confidence 9999999999999999999998876653
No 70
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.53 E-value=2.9e-14 Score=124.27 Aligned_cols=115 Identities=14% Similarity=0.141 Sum_probs=78.2
Q ss_pred cccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeee
Q psy7786 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLA 82 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~ 82 (252)
.+++| +++++++||+|||++|++++...+.. .+.++||++||++|+.|..+.++++.... ..++..+
T Consensus 20 ~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~----------~~~~~liv~P~~~L~~q~~~~~~~~~~~~--~~~v~~~ 86 (494)
T 1wp9_A 20 KCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK----------YGGKVLMLAPTKPLVLQHAESFRRLFNLP--PEKIVAL 86 (494)
T ss_dssp HGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH----------SCSCEEEECSSHHHHHHHHHHHHHHBCSC--GGGEEEE
T ss_pred HHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc----------CCCeEEEEECCHHHHHHHHHHHHHHhCcc--hhheEEe
Confidence 45677 99999999999999999999987751 25579999999999999999998775221 2578888
Q ss_pred eCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 83 IGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 83 ~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
+|+....++.... ...++. | ++|+.+..........+ ....++|.||+
T Consensus 87 ~g~~~~~~~~~~~-~~~~iv--v----~T~~~l~~~~~~~~~~~-~~~~~vIiDEa 134 (494)
T 1wp9_A 87 TGEKSPEERSKAW-ARAKVI--V----ATPQTIENDLLAGRISL-EDVSLIVFDEA 134 (494)
T ss_dssp CSCSCHHHHHHHH-HHCSEE--E----ECHHHHHHHHHTTSCCT-TSCSEEEEETG
T ss_pred eCCcchhhhhhhc-cCCCEE--E----ecHHHHHHHHhcCCcch-hhceEEEEECC
Confidence 8887655433322 233441 1 23555543322211112 24678999996
No 71
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.53 E-value=4.5e-14 Score=112.09 Aligned_cols=101 Identities=30% Similarity=0.446 Sum_probs=87.5
Q ss_pred CCCcccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCC
Q psy7786 139 VPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPG 218 (252)
Q Consensus 139 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~ 218 (252)
.+.+..+|.++++++.+.+.+.+.++..|+++|..+++..+.++++++.++||+|||.+|+++++..+... .
T Consensus 19 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~--------~ 90 (230)
T 2oxc_A 19 LLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE--------N 90 (230)
T ss_dssp -----CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT--------S
T ss_pred CCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc--------C
Confidence 34445689999999999999999999999999999999999999999999999999999999999876532 2
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHHHHhhC
Q psy7786 219 EGPYGLIICPSRELARQTHDIIQYYCAAL 247 (252)
Q Consensus 219 ~~~~~LIf~~tr~~a~~i~~~l~~l~~~~ 247 (252)
.++++||++|||+++.|+++.+++++...
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 119 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKM 119 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 35689999999999999999999987654
No 72
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.53 E-value=8.7e-14 Score=110.75 Aligned_cols=104 Identities=34% Similarity=0.446 Sum_probs=91.3
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCc
Q psy7786 142 ACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGP 221 (252)
Q Consensus 142 ~~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~ 221 (252)
...+|.++++++.+.+.+.+.++..|+++|..+++..+.++++++.++||+|||.+|++|++..+..... ....++
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~----~~~~~~ 98 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW----TSTDGL 98 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC----CGGGCC
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc----cccCCc
Confidence 3467999999999999999999999999999999999999999999999999999999999988765321 112357
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHHhhCCC
Q psy7786 222 YGLIICPSRELARQTHDIIQYYCAALPI 249 (252)
Q Consensus 222 ~~LIf~~tr~~a~~i~~~l~~l~~~~~i 249 (252)
++||++|||+++.|+++.+++++...++
T Consensus 99 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 126 (236)
T 2pl3_A 99 GVLIISPTRELAYQTFEVLRKVGKNHDF 126 (236)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSSC
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCCe
Confidence 8999999999999999999999876554
No 73
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.52 E-value=6.2e-14 Score=110.38 Aligned_cols=96 Identities=29% Similarity=0.396 Sum_probs=87.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEE
Q psy7786 144 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG 223 (252)
Q Consensus 144 ~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 223 (252)
.+|.++++++.+.+.+.+.++..|+++|..+++..+.++++++.++||+|||.+|+++++..+... ..+.++
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~--------~~~~~~ 75 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE--------RAEVQA 75 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT--------SCSCCE
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC--------cCCceE
Confidence 579999999999999999999999999999999999999999999999999999999999876432 235689
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhC
Q psy7786 224 LIICPSRELARQTHDIIQYYCAAL 247 (252)
Q Consensus 224 LIf~~tr~~a~~i~~~l~~l~~~~ 247 (252)
||++|||+++.|+++.+++++...
T Consensus 76 lil~Pt~~L~~q~~~~~~~~~~~~ 99 (219)
T 1q0u_A 76 VITAPTRELATQIYHETLKITKFC 99 (219)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTTS
T ss_pred EEEcCcHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999998765
No 74
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.52 E-value=6.8e-14 Score=110.43 Aligned_cols=103 Identities=28% Similarity=0.437 Sum_probs=92.0
Q ss_pred CCCcccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCC
Q psy7786 139 VPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPG 218 (252)
Q Consensus 139 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~ 218 (252)
.+++..+|.++++++.+.+.+.+.++..|+++|..+++..+.++++++.++||+|||.+|+++++..+... .
T Consensus 9 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~--------~ 80 (224)
T 1qde_A 9 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS--------V 80 (224)
T ss_dssp CCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT--------C
T ss_pred cCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc--------C
Confidence 45666789999999999999999999999999999999999999999999999999999999999876432 2
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHHHHhhCCC
Q psy7786 219 EGPYGLIICPSRELARQTHDIIQYYCAALPI 249 (252)
Q Consensus 219 ~~~~~LIf~~tr~~a~~i~~~l~~l~~~~~i 249 (252)
.++++||++|||+++.|+++.+++++...++
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDI 111 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCc
Confidence 3568999999999999999999998876654
No 75
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.52 E-value=6e-14 Score=111.13 Aligned_cols=106 Identities=34% Similarity=0.519 Sum_probs=90.0
Q ss_pred CCCCCccccccc-CCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCC
Q psy7786 137 DDVPPACCSFRL-MKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPF 215 (252)
Q Consensus 137 e~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~ 215 (252)
..+|++..+|.+ +++++++.+.+.+.|+..|+++|..+++..+.++++++.++||+|||.+|++|.+..+..+... .
T Consensus 12 ~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~--~ 89 (228)
T 3iuy_A 12 RLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPIS--R 89 (228)
T ss_dssp CCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC--------
T ss_pred CcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccch--h
Confidence 357888889999 7999999999999999999999999999999999999999999999999999999877643211 1
Q ss_pred CCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 216 LPGEGPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 216 ~~~~~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
....++++||++|||++|.|+++.+++++
T Consensus 90 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 118 (228)
T 3iuy_A 90 EQRNGPGMLVLTPTRELALHVEAECSKYS 118 (228)
T ss_dssp ---CCCSEEEECSSHHHHHHHHHHHHHHC
T ss_pred hccCCCcEEEEeCCHHHHHHHHHHHHHhc
Confidence 12346789999999999999999999875
No 76
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.51 E-value=1.2e-13 Score=132.06 Aligned_cols=107 Identities=19% Similarity=0.191 Sum_probs=76.7
Q ss_pred CC--cEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeC
Q psy7786 7 SR--DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIG 84 (252)
Q Consensus 7 g~--d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g 84 (252)
|+ |++++++||||||++|+++++..+. .+.+++|++||++||.|.++.+++.....+ +++..+.|
T Consensus 622 g~p~d~ll~~~TGsGKT~val~aa~~~~~-----------~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~--i~v~~l~~ 688 (1151)
T 2eyq_A 622 PLAMDRLVCGDVGFGKTEVAMRAAFLAVD-----------NHKQVAVLVPTTLLAQQHYDNFRDRFANWP--VRIEMISR 688 (1151)
T ss_dssp SSCCEEEEECCCCTTTHHHHHHHHHHHHT-----------TTCEEEEECSSHHHHHHHHHHHHHHSTTTT--CCEEEEST
T ss_pred CCcCcEEEECCCCCCHHHHHHHHHHHHHH-----------hCCeEEEEechHHHHHHHHHHHHHHhhcCC--CeEEEEeC
Confidence 66 9999999999999999999987653 256899999999999999999987765555 78888877
Q ss_pred CcccCcchhh---hhhc-ccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 85 GVPMNQSLDV---IKKG-IQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 85 ~~~~~~~~~~---l~~~-~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
..+..++.+. +..+ ++|. |. ||..+.... .+ .++.++|.||+
T Consensus 689 ~~~~~~~~~~~~~l~~g~~dIv--V~----T~~ll~~~~-----~~-~~l~lvIiDEa 734 (1151)
T 2eyq_A 689 FRSAKEQTQILAEVAEGKIDIL--IG----THKLLQSDV-----KF-KDLGLLIVDEE 734 (1151)
T ss_dssp TSCHHHHHHHHHHHHTTCCSEE--EE----CTHHHHSCC-----CC-SSEEEEEEESG
T ss_pred CCCHHHHHHHHHHHhcCCCCEE--EE----CHHHHhCCc-----cc-cccceEEEech
Confidence 7655544333 3333 5552 22 365443211 12 34789999996
No 77
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.50 E-value=1.2e-13 Score=107.50 Aligned_cols=96 Identities=33% Similarity=0.479 Sum_probs=87.1
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEE
Q psy7786 144 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG 223 (252)
Q Consensus 144 ~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 223 (252)
.+|.++++++++.+.+.+.|+..|+++|..+++..+.++++++.++||+|||.++++|.+..+... ..++++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~--------~~~~~~ 74 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK--------KDNIQA 74 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT--------SCSCCE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc--------CCCeeE
Confidence 479999999999999999999999999999999999999999999999999999999999765432 235689
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhC
Q psy7786 224 LIICPSRELARQTHDIIQYYCAAL 247 (252)
Q Consensus 224 LIf~~tr~~a~~i~~~l~~l~~~~ 247 (252)
||++|||+++.|+++.++++....
T Consensus 75 lil~Pt~~L~~q~~~~~~~~~~~~ 98 (206)
T 1vec_A 75 MVIVPTRELALQVSQICIQVSKHM 98 (206)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTS
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999988765
No 78
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.49 E-value=1.2e-14 Score=133.47 Aligned_cols=106 Identities=22% Similarity=0.212 Sum_probs=80.6
Q ss_pred CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCcc
Q psy7786 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVP 87 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~~ 87 (252)
+|++++++||||||++|++|+++.+.. +.+++|++||++||.|+++.++++....+ +++..++|+.+
T Consensus 390 ~~~Ll~a~TGSGKTlvall~il~~l~~-----------g~qvlvlaPtr~La~Q~~~~l~~~~~~~g--i~v~~l~G~~~ 456 (780)
T 1gm5_A 390 MNRLLQGDVGSGKTVVAQLAILDNYEA-----------GFQTAFMVPTSILAIQHYRRTVESFSKFN--IHVALLIGATT 456 (780)
T ss_dssp CCCEEECCSSSSHHHHHHHHHHHHHHH-----------TSCEEEECSCHHHHHHHHHHHHHHHTCSS--CCEEECCSSSC
T ss_pred CcEEEEcCCCCCHHHHHHHHHHHHHHc-----------CCeEEEEeCcHHHHHHHHHHHHHHhhhcC--ceEEEEeCCCC
Confidence 599999999999999999999988753 45799999999999999999999987776 88999999987
Q ss_pred cCcchhh---hhhc-ccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 88 MNQSLDV---IKKG-IQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 88 ~~~~~~~---l~~~-~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
..++.+. +.++ ++|. | +||+++.+. ..+ .++.++|.||.
T Consensus 457 ~~~r~~~~~~l~~g~~~Iv--V----gT~~ll~~~-----~~~-~~l~lVVIDEa 499 (780)
T 1gm5_A 457 PSEKEKIKSGLRNGQIDVV--I----GTHALIQED-----VHF-KNLGLVIIDEQ 499 (780)
T ss_dssp HHHHHHHHHHHHSSCCCEE--E----ECTTHHHHC-----CCC-SCCCEEEEESC
T ss_pred HHHHHHHHHHHhcCCCCEE--E----ECHHHHhhh-----hhc-cCCceEEeccc
Confidence 7654433 3333 4552 2 236554221 123 34789998886
No 79
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.48 E-value=2.5e-13 Score=106.90 Aligned_cols=96 Identities=32% Similarity=0.435 Sum_probs=86.4
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEE
Q psy7786 144 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG 223 (252)
Q Consensus 144 ~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 223 (252)
.+|.++++++.+.+.+.+.++..|+++|..+++..+.++++++.++||+|||.+++++.+..+... ..+.++
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~--------~~~~~~ 85 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--------TGQVSV 85 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC--------TTCCCE
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc--------CCCEEE
Confidence 569999999999999999999999999999999999999999999999999999999998765321 234589
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhC
Q psy7786 224 LIICPSRELARQTHDIIQYYCAAL 247 (252)
Q Consensus 224 LIf~~tr~~a~~i~~~l~~l~~~~ 247 (252)
||++|||+++.|+++.++++.+..
T Consensus 86 lil~Pt~~L~~q~~~~~~~~~~~~ 109 (220)
T 1t6n_A 86 LVMCHTRELAFQISKEYERFSKYM 109 (220)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTS
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999997765
No 80
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.47 E-value=2.6e-13 Score=105.70 Aligned_cols=98 Identities=39% Similarity=0.628 Sum_probs=86.8
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEE
Q psy7786 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGL 224 (252)
Q Consensus 145 ~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~L 224 (252)
+|.++++++.+.+.+.+.++..|+++|..+++..+.++++++.++||+|||.+++++++..+.... ....++++|
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~-----~~~~~~~~l 76 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQ-----ERGRKPRAL 76 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCC-----CTTCCCSEE
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhcc-----ccCCCCcEE
Confidence 588999999999999999999999999999999999999999999999999999999998765321 123467899
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhC
Q psy7786 225 IICPSRELARQTHDIIQYYCAAL 247 (252)
Q Consensus 225 If~~tr~~a~~i~~~l~~l~~~~ 247 (252)
|++|||+++.|+++.++++...+
T Consensus 77 il~P~~~L~~q~~~~~~~~~~~~ 99 (207)
T 2gxq_A 77 VLTPTRELALQVASELTAVAPHL 99 (207)
T ss_dssp EECSSHHHHHHHHHHHHHHCTTS
T ss_pred EEECCHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999886553
No 81
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.46 E-value=1.6e-13 Score=124.34 Aligned_cols=114 Identities=16% Similarity=0.027 Sum_probs=80.2
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeee
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAI 83 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~ 83 (252)
.++|+|++++||||||||+ ++++.+.... +++|++||||||.|+++.++.+ | +++...+
T Consensus 152 ~l~rk~vlv~apTGSGKT~----~al~~l~~~~-----------~gl~l~PtR~LA~Qi~~~l~~~----g--~~v~llt 210 (677)
T 3rc3_A 152 AMQRKIIFHSGPTNSGKTY----HAIQKYFSAK-----------SGVYCGPLKLLAHEIFEKSNAA----G--VPCDLVT 210 (677)
T ss_dssp TSCCEEEEEECCTTSSHHH----HHHHHHHHSS-----------SEEEEESSHHHHHHHHHHHHHT----T--CCEEEEC
T ss_pred hcCCCEEEEEcCCCCCHHH----HHHHHHHhcC-----------CeEEEeCHHHHHHHHHHHHHhc----C--CcEEEEE
Confidence 4689999999999999997 6666665532 3699999999999999988764 4 6788888
Q ss_pred CCcccCcchhhhhhcccccCCccccccCCccccCCChhHH--HHHhhhhceeeccCCCCCcccccccCCCCHHHHHHHHH
Q psy7786 84 GGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVH--DIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEA 161 (252)
Q Consensus 84 g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~--~~l~~~~~~~V~de~~~~~~~~~~~~~l~~~l~~~l~~ 161 (252)
|+... + +. +|++..++..... ..+...+.++|.||+ +.+.+.++...+...+..
T Consensus 211 G~~~~------------i---v~----TpGr~~~il~~T~e~~~l~~~v~lvVIDEa-----H~l~d~~~g~~~~~~l~~ 266 (677)
T 3rc3_A 211 GEERV------------T---VQ----PNGKQASHVSCTVEMCSVTTPYEVAVIDEI-----QMIRDPARGWAWTRALLG 266 (677)
T ss_dssp SSCEE------------C---CS----TTCCCCSEEEEEGGGCCSSSCEEEEEECSG-----GGGGCTTTHHHHHHHHHH
T ss_pred CCeeE------------E---ec----CCCcccceeEecHhHhhhcccCCEEEEecc-----eecCCccchHHHHHHHHc
Confidence 88543 0 11 2444333322211 113345799999997 778788888877777766
Q ss_pred C
Q psy7786 162 K 162 (252)
Q Consensus 162 ~ 162 (252)
.
T Consensus 267 l 267 (677)
T 3rc3_A 267 L 267 (677)
T ss_dssp C
T ss_pred c
Confidence 4
No 82
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.45 E-value=3.8e-13 Score=108.88 Aligned_cols=101 Identities=34% Similarity=0.508 Sum_probs=85.3
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcE
Q psy7786 145 SFRLMK--LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPY 222 (252)
Q Consensus 145 ~~~~~~--l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~ 222 (252)
+|.+++ +++.+++.+...|+..|+++|..+++..+.+++++++++||+|||.+|++|++..+..... ....+.+
T Consensus 53 ~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~----~~~~~~~ 128 (262)
T 3ly5_A 53 SFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF----MPRNGTG 128 (262)
T ss_dssp CC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC----CGGGCCC
T ss_pred ChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc----cccCCce
Confidence 456665 8999999999999999999999999999999999999999999999999999988775321 1123668
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhCCC
Q psy7786 223 GLIICPSRELARQTHDIIQYYCAALPI 249 (252)
Q Consensus 223 ~LIf~~tr~~a~~i~~~l~~l~~~~~i 249 (252)
+||++|||++|.|+++.+++++...++
T Consensus 129 ~lil~Pt~~La~q~~~~~~~~~~~~~~ 155 (262)
T 3ly5_A 129 VLILSPTRELAMQTFGVLKELMTHHVH 155 (262)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTCCS
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhcCc
Confidence 999999999999999999999876654
No 83
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.42 E-value=1.9e-14 Score=128.36 Aligned_cols=69 Identities=22% Similarity=0.109 Sum_probs=59.5
Q ss_pred cccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeee
Q psy7786 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLA 82 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~ 82 (252)
.+.+|+|++++||||||||++|++|++. . +.+++|++||++|+.|+.+.++.+.+..+ +++..+
T Consensus 18 ~l~~~~~~~~~a~TGtGKT~~~l~p~l~-----~---------~~~v~i~~pt~~l~~q~~~~~~~l~~~~~--~~~~~l 81 (551)
T 3crv_A 18 GLRNNFLVALNAPTGSGKTLFSLLVSLE-----V---------KPKVLFVVRTHNEFYPIYRDLTKIREKRN--ITFSFL 81 (551)
T ss_dssp HHHTTCEEEEECCTTSSHHHHHHHHHHH-----H---------CSEEEEEESSGGGHHHHHHHHTTCCCSSC--CCEEEC
T ss_pred HHHcCCcEEEECCCCccHHHHHHHHHHh-----C---------CCeEEEEcCCHHHHHHHHHHHHHHhhhcC--ccEEEE
Confidence 3568999999999999999999999997 1 46899999999999999999999877765 777777
Q ss_pred eCCcc
Q psy7786 83 IGGVP 87 (252)
Q Consensus 83 ~g~~~ 87 (252)
.|+.+
T Consensus 82 ~gr~~ 86 (551)
T 3crv_A 82 VGKPS 86 (551)
T ss_dssp CCHHH
T ss_pred ccccc
Confidence 77543
No 84
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.42 E-value=1.9e-14 Score=114.72 Aligned_cols=115 Identities=13% Similarity=0.022 Sum_probs=73.2
Q ss_pred CcccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceee
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCL 81 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~ 81 (252)
+.+.+|++++++|+||||||.+|.+++++....... ..+++++++.|||+|+.|+.+.+... .+..+ ..
T Consensus 71 ~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~------~~~~~~l~~~p~~~la~q~~~~~~~~---~~~~~--~~ 139 (235)
T 3llm_A 71 EAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR------AAECNIVVTQPRRISAVSVAERVAFE---RGEEP--GK 139 (235)
T ss_dssp HHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC------GGGCEEEEEESSHHHHHHHHHHHHHT---TTCCT--TS
T ss_pred HHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC------CCceEEEEeccchHHHHHHHHHHHHH---hcccc--Cc
Confidence 456789999999999999999999999987765432 13568999999999999997766543 22111 11
Q ss_pred eeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 82 AIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
.+|. .........+.+.+|. + .+|+++.++... .+ ++++++|.||+
T Consensus 140 ~~g~-~~~~~~~~~~~~~~Iv--v----~Tpg~l~~~l~~---~l-~~~~~lVlDEa 185 (235)
T 3llm_A 140 SCGY-SVRFESILPRPHASIM--F----CTVGVLLRKLEA---GI-RGISHVIVDEI 185 (235)
T ss_dssp SEEE-EETTEEECCCSSSEEE--E----EEHHHHHHHHHH---CC-TTCCEEEECCT
T ss_pred eEEE-eechhhccCCCCCeEE--E----ECHHHHHHHHHh---hh-cCCcEEEEECC
Confidence 1221 1111111111233442 2 337777665433 23 34899999997
No 85
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.41 E-value=7.5e-13 Score=113.60 Aligned_cols=101 Identities=32% Similarity=0.447 Sum_probs=89.9
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCc
Q psy7786 142 ACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGP 221 (252)
Q Consensus 142 ~~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~ 221 (252)
...+|.++++++.+.+.+...++..|+++|..+++..+.++++++.++||+|||.+++++++..+... ..+.
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--------~~~~ 106 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ--------VRET 106 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT--------SCSC
T ss_pred CCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc--------cCCc
Confidence 34689999999999999999999999999999999999999999999999999999999998755321 2356
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHHhhCCCC
Q psy7786 222 YGLIICPSRELARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 222 ~~LIf~~tr~~a~~i~~~l~~l~~~~~i~ 250 (252)
++||++|||+++.|+++.+++++...++.
T Consensus 107 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 135 (410)
T 2j0s_A 107 QALILAPTRELAVQIQKGLLALGDYMNVQ 135 (410)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhccCCeE
Confidence 89999999999999999999998877653
No 86
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.38 E-value=2.7e-13 Score=110.84 Aligned_cols=110 Identities=16% Similarity=0.089 Sum_probs=77.0
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeee
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAI 83 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~ 83 (252)
++++++.+++++||||||+++++++...+... ..++||++||++|+.|..+.++++....+ ..+..++
T Consensus 125 ~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~----------~~~~lil~Pt~~L~~q~~~~l~~~~~~~~--~~~~~~~ 192 (282)
T 1rif_A 125 GLVNRRRILNLPTSAGRSLIQALLARYYLENY----------EGKILIIVPTTALTTQMADDFVDYRLFSH--AMIKKIG 192 (282)
T ss_dssp HHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC----------SSEEEEECSSHHHHHHHHHHHHHHTSCCG--GGEEECS
T ss_pred HHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC----------CCeEEEEECCHHHHHHHHHHHHHhccccc--ceEEEEe
Confidence 45667889999999999999998887765421 33799999999999999999998854433 6777777
Q ss_pred CCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 84 GGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 84 g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
||..... ....+.+|. | ++|+.+..... .....+.++|.||+
T Consensus 193 ~~~~~~~---~~~~~~~I~--v----~T~~~l~~~~~----~~~~~~~~vIiDEa 234 (282)
T 1rif_A 193 GGASKDD---KYKNDAPVV--V----GTWQTVVKQPK----EWFSQFGMMMNDEC 234 (282)
T ss_dssp TTCSSTT---CCCTTCSEE--E----ECHHHHTTSCG----GGGGGEEEEEEETG
T ss_pred CCCcchh---hhccCCcEE--E----EchHHHHhhHH----HHHhhCCEEEEECC
Confidence 7754432 111233441 2 34777765533 22344789999996
No 87
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.37 E-value=2.9e-12 Score=109.04 Aligned_cols=99 Identities=32% Similarity=0.487 Sum_probs=88.8
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcC--CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCC
Q psy7786 143 CCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSG--RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEG 220 (252)
Q Consensus 143 ~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~--~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~ 220 (252)
..+|.++++++.+.+.+.+.++..|+++|..+++..+.+ +++++.++||+|||.+++++++..+... ..+
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~--------~~~ 75 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE--------DAS 75 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--------CCS
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC--------CCC
Confidence 468999999999999999999999999999999999988 9999999999999999999998765432 235
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHHHhhCCC
Q psy7786 221 PYGLIICPSRELARQTHDIIQYYCAALPI 249 (252)
Q Consensus 221 ~~~LIf~~tr~~a~~i~~~l~~l~~~~~i 249 (252)
.++||++||++++.|+++.+++++...++
T Consensus 76 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 104 (395)
T 3pey_A 76 PQAICLAPSRELARQTLEVVQEMGKFTKI 104 (395)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred ccEEEECCCHHHHHHHHHHHHHHhcccCe
Confidence 68999999999999999999998876654
No 88
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.37 E-value=3.4e-13 Score=119.18 Aligned_cols=111 Identities=16% Similarity=0.122 Sum_probs=81.4
Q ss_pred cccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeee
Q psy7786 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLA 82 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~ 82 (252)
.+++++|++++++||||||++|++|+...+... ..++||++||++|+.|.++.+++++...+ +++..+
T Consensus 124 ~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~----------~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~--~~v~~~ 191 (510)
T 2oca_A 124 EGLVNRRRILNLPTSAGRSLIQALLARYYLENY----------EGKILIIVPTTALTTQMADDFVDYRLFSH--AMIKKI 191 (510)
T ss_dssp HHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC----------SSEEEEEESSHHHHHHHHHHHHHTTSSCG--GGEEEC
T ss_pred HHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC----------CCeEEEEECcHHHHHHHHHHHHHhhcCCc--cceEEE
Confidence 456789999999999999999999988776431 34899999999999999999988755443 678888
Q ss_pred eCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 83 IGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 83 ~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
.|+.+..++ +..+.+|. |. +|+.+..... ..+. .+.++|.||+
T Consensus 192 ~~~~~~~~~---~~~~~~I~--i~----T~~~l~~~~~---~~~~-~~~liIiDE~ 234 (510)
T 2oca_A 192 GGGASKDDK---YKNDAPVV--VG----TWQTVVKQPK---EWFS-QFGMMMNDEC 234 (510)
T ss_dssp GGGCCTTGG---GCTTCSEE--EE----EHHHHTTSCG---GGGG-GEEEEEEETG
T ss_pred ecCCccccc---cccCCcEE--EE----eHHHHhhchh---hhhh-cCCEEEEECC
Confidence 888665544 33445552 33 3776655422 2233 4889999996
No 89
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.36 E-value=3.7e-12 Score=109.12 Aligned_cols=97 Identities=30% Similarity=0.447 Sum_probs=87.3
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcC--CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCC
Q psy7786 143 CCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSG--RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEG 220 (252)
Q Consensus 143 ~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~--~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~ 220 (252)
..+|.++++++.+.+.+.+.++..|+++|..+++..+.+ +++++.++||+|||.+++++++..+... ..+
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~--------~~~ 95 (412)
T 3fht_A 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--------NKY 95 (412)
T ss_dssp SSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--------SCS
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc--------CCC
Confidence 467999999999999999999999999999999999987 9999999999999999999999766432 235
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHHHhhC
Q psy7786 221 PYGLIICPSRELARQTHDIIQYYCAAL 247 (252)
Q Consensus 221 ~~~LIf~~tr~~a~~i~~~l~~l~~~~ 247 (252)
+++||++|||+++.|+++.+++++...
T Consensus 96 ~~~lil~P~~~L~~q~~~~~~~~~~~~ 122 (412)
T 3fht_A 96 PQCLCLSPTYELALQTGKVIEQMGKFY 122 (412)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHhhc
Confidence 689999999999999999999988754
No 90
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.35 E-value=2.5e-12 Score=112.76 Aligned_cols=97 Identities=30% Similarity=0.447 Sum_probs=86.8
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcC--CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCC
Q psy7786 143 CCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSG--RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEG 220 (252)
Q Consensus 143 ~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~--~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~ 220 (252)
..+|.++++++.+.+.+...++..|+++|..+++..+.+ ++++++++||+|||.+|++|++..+... ..+
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~--------~~~ 162 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--------NKY 162 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT--------SCS
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc--------CCC
Confidence 467899999999999999999999999999999999987 9999999999999999999998755332 235
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHHHhhC
Q psy7786 221 PYGLIICPSRELARQTHDIIQYYCAAL 247 (252)
Q Consensus 221 ~~~LIf~~tr~~a~~i~~~l~~l~~~~ 247 (252)
+++||++|||++|.|+++.+++++...
T Consensus 163 ~~~lil~Pt~~La~Q~~~~~~~~~~~~ 189 (479)
T 3fmp_B 163 PQCLCLSPTYELALQTGKVIEQMGKFY 189 (479)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTS
T ss_pred CcEEEEeChHHHHHHHHHHHHHHHhhC
Confidence 689999999999999999999998764
No 91
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.34 E-value=4.5e-12 Score=108.31 Aligned_cols=99 Identities=35% Similarity=0.522 Sum_probs=88.9
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEE
Q psy7786 144 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG 223 (252)
Q Consensus 144 ~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 223 (252)
.+|.++++++.+.+.+.+.|+..|+++|..+++..+.++++++.++||+|||.+++++++..+... ..+.++
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~--------~~~~~~ 92 (400)
T 1s2m_A 21 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK--------LNKIQA 92 (400)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT--------SCSCCE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc--------cCCccE
Confidence 579999999999999999999999999999999999999999999999999999999998765432 235689
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhCCCC
Q psy7786 224 LIICPSRELARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 224 LIf~~tr~~a~~i~~~l~~l~~~~~i~ 250 (252)
||++||++++.|+++.+++++...++.
T Consensus 93 lil~P~~~L~~q~~~~~~~~~~~~~~~ 119 (400)
T 1s2m_A 93 LIMVPTRELALQTSQVVRTLGKHCGIS 119 (400)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCC
T ss_pred EEEcCCHHHHHHHHHHHHHHhcccCce
Confidence 999999999999999999998876653
No 92
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.34 E-value=7.5e-12 Score=107.31 Aligned_cols=103 Identities=32% Similarity=0.444 Sum_probs=91.2
Q ss_pred CCCcccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCC
Q psy7786 139 VPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPG 218 (252)
Q Consensus 139 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~ 218 (252)
......+|.++++++.+.+.+.+.++..|+++|..+++..+.++++++.++||+|||.+++++++..+... .
T Consensus 35 ~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~--------~ 106 (414)
T 3eiq_A 35 WNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD--------L 106 (414)
T ss_dssp CCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT--------S
T ss_pred ccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc--------C
Confidence 34445789999999999999999999999999999999999999999999999999999999999765432 2
Q ss_pred CCcEEEEEcCcHHHHHHHHHHHHHHHhhCCC
Q psy7786 219 EGPYGLIICPSRELARQTHDIIQYYCAALPI 249 (252)
Q Consensus 219 ~~~~~LIf~~tr~~a~~i~~~l~~l~~~~~i 249 (252)
.+.++||++|||+++.|+++.+++++...++
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 137 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGA 137 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCC
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCc
Confidence 3567999999999999999999999877664
No 93
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.32 E-value=4.4e-12 Score=107.99 Aligned_cols=100 Identities=29% Similarity=0.458 Sum_probs=89.5
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCc
Q psy7786 142 ACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGP 221 (252)
Q Consensus 142 ~~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~ 221 (252)
...+|.++++++.+.+.+...++..|+++|..+++..+.++++++.++||+|||.+++++++..+... ..++
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~--------~~~~ 90 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS--------VKAP 90 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT--------CCSC
T ss_pred ccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc--------CCCC
Confidence 34679999999999999999999999999999999999999999999999999999999999765432 2356
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHHhhCCC
Q psy7786 222 YGLIICPSRELARQTHDIIQYYCAALPI 249 (252)
Q Consensus 222 ~~LIf~~tr~~a~~i~~~l~~l~~~~~i 249 (252)
++||++||++++.|+++.++++....++
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~ 118 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHMDI 118 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccCCe
Confidence 8999999999999999999998877654
No 94
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.30 E-value=2.4e-12 Score=116.04 Aligned_cols=73 Identities=19% Similarity=0.208 Sum_probs=64.0
Q ss_pred cccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeee
Q psy7786 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLA 82 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~ 82 (252)
.+.+|+|++++||||||||++|++|++..+... +.+++|++||++|+.|+.+.++.+.+..+ +++..+
T Consensus 18 ~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~----------~~kvli~t~T~~l~~Qi~~el~~l~~~~~--~~~~~l 85 (620)
T 4a15_A 18 SLQKSYGVALESPTGSGKTIMALKSALQYSSER----------KLKVLYLVRTNSQEEQVIKELRSLSSTMK--IRAIPM 85 (620)
T ss_dssp HHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH----------TCEEEEEESSHHHHHHHHHHHHHHHHHSC--CCEEEC
T ss_pred HHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc----------CCeEEEECCCHHHHHHHHHHHHHHhhccC--eEEEEE
Confidence 457899999999999999999999999987642 45899999999999999999999998875 788887
Q ss_pred eCCcc
Q psy7786 83 IGGVP 87 (252)
Q Consensus 83 ~g~~~ 87 (252)
.|+.+
T Consensus 86 ~gr~~ 90 (620)
T 4a15_A 86 QGRVN 90 (620)
T ss_dssp CCHHH
T ss_pred ECCCc
Confidence 77654
No 95
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.29 E-value=1e-11 Score=105.59 Aligned_cols=96 Identities=32% Similarity=0.435 Sum_probs=85.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEE
Q psy7786 144 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG 223 (252)
Q Consensus 144 ~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 223 (252)
.+|.++++++.+.+.+...++..|+++|..+++..+.++++++.++||+|||.+++++++..+... ..+.++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--------~~~~~~ 79 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--------TGQVSV 79 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC--------TTCCCE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc--------CCCeeE
Confidence 468999999999999999999999999999999999999999999999999999999998765321 235689
Q ss_pred EEEcCcHHHHHHHHHHHHHHHhhC
Q psy7786 224 LIICPSRELARQTHDIIQYYCAAL 247 (252)
Q Consensus 224 LIf~~tr~~a~~i~~~l~~l~~~~ 247 (252)
||+|||++++.|+++.++++.+..
T Consensus 80 lil~P~~~L~~q~~~~~~~~~~~~ 103 (391)
T 1xti_A 80 LVMCHTRELAFQISKEYERFSKYM 103 (391)
T ss_dssp EEECSCHHHHHHHHHHHHHHTTTC
T ss_pred EEECCCHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999997765
No 96
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.25 E-value=2.2e-11 Score=102.48 Aligned_cols=96 Identities=35% Similarity=0.544 Sum_probs=85.7
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcC-CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcE
Q psy7786 144 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSG-RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPY 222 (252)
Q Consensus 144 ~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~-~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~ 222 (252)
.+|.++++++.+.+.+.+.++..|+++|..+++..+.+ +++++.++||+|||..++.+++..+.. ..+.+
T Consensus 6 ~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~---------~~~~~ 76 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE---------NNGIE 76 (367)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS---------SSSCC
T ss_pred CchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc---------cCCCc
Confidence 57999999999999999999999999999999999988 799999999999999999998875532 23568
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHhhCC
Q psy7786 223 GLIICPSRELARQTHDIIQYYCAALP 248 (252)
Q Consensus 223 ~LIf~~tr~~a~~i~~~l~~l~~~~~ 248 (252)
+||++|+++++.|+++.++++....+
T Consensus 77 ~lil~P~~~L~~q~~~~~~~~~~~~~ 102 (367)
T 1hv8_A 77 AIILTPTRELAIQVADEIESLKGNKN 102 (367)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHCSSC
T ss_pred EEEEcCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999876554
No 97
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.24 E-value=3.4e-11 Score=108.02 Aligned_cols=92 Identities=26% Similarity=0.379 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhh--cCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcC
Q psy7786 151 LPESLVRALEAKGIKKPTPIQVQGIPAAL--SGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICP 228 (252)
Q Consensus 151 l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~--~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~ 228 (252)
+++++++.+...++..|+++|..+++.++ .++++++.++||+|||.+|++|++..+..... ....++++||++|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~----~~~~~~~~lvl~P 103 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF----DSQYMVKAVIVAP 103 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT----SSTTSCCEEEECS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc----cccCCCeEEEEcc
Confidence 99999999999999999999999999999 78899999999999999999999998876431 1233578999999
Q ss_pred cHHHHHHHHHHHHHHHhh
Q psy7786 229 SRELARQTHDIIQYYCAA 246 (252)
Q Consensus 229 tr~~a~~i~~~l~~l~~~ 246 (252)
||++|.|+++.++++...
T Consensus 104 tr~La~Q~~~~~~~~~~~ 121 (579)
T 3sqw_A 104 TRDLALQIEAEVKKIHDM 121 (579)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 999999999999998753
No 98
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.22 E-value=3.8e-12 Score=117.39 Aligned_cols=112 Identities=15% Similarity=0.107 Sum_probs=64.8
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeee
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAI 83 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~ 83 (252)
+.+|++++++||||||||+ ++|++- ...... ...+.++++++|+|+||.|+.+.+ ++.++ ..+...+
T Consensus 106 l~~~~~vii~gpTGSGKTt--llp~ll--~~~~~~----~~~g~~ilvl~P~r~La~q~~~~l---~~~~~--~~v~~~v 172 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTT--QIPQFV--LFDEMP----HLENTQVACTQPRRVAAMSVAQRV---AEEMD--VKLGEEV 172 (773)
T ss_dssp HHHCSEEEEECCTTSSHHH--HHHHHH--HHHHCG----GGGTCEEEEEESCHHHHHHHHHHH---HHHTT--CCBTTTE
T ss_pred HhCCCeEEEECCCCCCHHH--HHHHHH--HHhccc----cCCCceEEecCchHHHHHHHHHHH---HHHhC--Cchhhee
Confidence 3467789999999999998 677772 222110 012567999999999999998654 44455 3444444
Q ss_pred CCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 84 GGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 84 g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
|+....+.. .....+|. + .+||++....... .+...+.++|.||.
T Consensus 173 G~~i~~~~~--~~~~~~I~--v----~T~G~l~r~l~~~--~~l~~~~~lIlDEa 217 (773)
T 2xau_A 173 GYSIRFENK--TSNKTILK--Y----MTDGMLLREAMED--HDLSRYSCIILDEA 217 (773)
T ss_dssp EEEETTEEE--CCTTCSEE--E----EEHHHHHHHHHHS--TTCTTEEEEEECSG
T ss_pred cceeccccc--cCCCCCEE--E----ECHHHHHHHHhhC--ccccCCCEEEecCc
Confidence 432111110 11223331 2 2366665432221 12334889999996
No 99
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.21 E-value=2.9e-11 Score=108.71 Aligned_cols=110 Identities=14% Similarity=0.059 Sum_probs=52.5
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHH-HHHHHHHHhCCCCcceeeeeCC
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH-DIIQYYCAALPIPLRTCLAIGG 85 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~-~~~~~l~~~~~~~~~~~~~~g~ 85 (252)
+++++++++||||||+++ ++++..+...... ......+.++||++||++|+.|.. +.++.++ ..+..+.++
T Consensus 198 ~~~~ll~~~TGsGKT~~~-~~~~~~l~~~~~~-~~~~~~~~~vlil~P~~~L~~Q~~~~~~~~~~------~~~~~~~~~ 269 (590)
T 3h1t_A 198 KKRSLITMATGTGKTVVA-FQISWKLWSARWN-RTGDYRKPRILFLADRNVLVDDPKDKTFTPFG------DARHKIEGG 269 (590)
T ss_dssp CSEEEEEECTTSCHHHHH-HHHHHHHHHTTCC-SSCSSSCCCEEEEEC-----------CCTTTC------SSEEECCC-
T ss_pred CCceEEEecCCCChHHHH-HHHHHHHHhcccc-cccccCCCeEEEEeCCHHHHHHHHHHHHHhcc------hhhhhhhcc
Confidence 356999999999999995 4555555543210 001124678999999999999998 6666542 222223322
Q ss_pred cccCcchhhhhhcccccCCccccccCCccccCCChhH--HHHH-hhhhceeeccCC
Q psy7786 86 VPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQV--HDII-RRNLRILVEGDD 138 (252)
Q Consensus 86 ~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~--~~~l-~~~~~~~V~de~ 138 (252)
. ...+.+|. | ++|+++....... ...+ .....++|.||+
T Consensus 270 ~--------~~~~~~I~--v----~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEa 311 (590)
T 3h1t_A 270 K--------VVKSREIY--F----AIYQSIASDERRPGLYKEFPQDFFDLIIIDEC 311 (590)
T ss_dssp ---------CCSSCSEE--E----EEGGGC------CCGGGGSCTTSCSEEEESCC
T ss_pred C--------CCCCCcEE--E----EEhhhhccccccccccccCCCCccCEEEEECC
Confidence 1 12233441 2 3478777654311 1111 233678898997
No 100
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.20 E-value=6.2e-11 Score=105.88 Aligned_cols=92 Identities=26% Similarity=0.395 Sum_probs=81.6
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhh--cCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcC
Q psy7786 151 LPESLVRALEAKGIKKPTPIQVQGIPAAL--SGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICP 228 (252)
Q Consensus 151 l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~--~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~ 228 (252)
+++.+.+.+.+.++..|+++|..+++..+ .++++++.++||+|||.+|++|++..+...... ...++++||++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~----~~~~~~~lil~P 154 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD----SQYMVKAVIVAP 154 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS----STTSCCEEEECS
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc----ccCCeeEEEEcC
Confidence 99999999999999999999999999999 678999999999999999999999988765321 223568999999
Q ss_pred cHHHHHHHHHHHHHHHhh
Q psy7786 229 SRELARQTHDIIQYYCAA 246 (252)
Q Consensus 229 tr~~a~~i~~~l~~l~~~ 246 (252)
||++|.|+++.++++...
T Consensus 155 tr~La~Q~~~~~~~~~~~ 172 (563)
T 3i5x_A 155 TRDLALQIEAEVKKIHDM 172 (563)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhh
Confidence 999999999999998653
No 101
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.15 E-value=2.1e-11 Score=106.65 Aligned_cols=97 Identities=16% Similarity=0.121 Sum_probs=70.6
Q ss_pred cccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcc-eee
Q psy7786 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLR-TCL 81 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~-~~~ 81 (252)
.++++++++++++||||||++|+.++... +.++||++||++|+.|..+.++++ + ++ +..
T Consensus 104 ~i~~~~~~ll~~~TGsGKT~~~l~~i~~~--------------~~~~Lvl~P~~~L~~Q~~~~~~~~----~--~~~v~~ 163 (472)
T 2fwr_A 104 RWLVDKRGCIVLPTGSGKTHVAMAAINEL--------------STPTLIVVPTLALAEQWKERLGIF----G--EEYVGE 163 (472)
T ss_dssp HHTTTTEEEEECCTTSCHHHHHHHHHHHH--------------CSCEEEEESSHHHHHHHHHHGGGG----C--GGGEEE
T ss_pred HHHhcCCEEEEeCCCCCHHHHHHHHHHHc--------------CCCEEEEECCHHHHHHHHHHHHhC----C--CcceEE
Confidence 46778899999999999999999998753 346999999999999999988874 4 67 777
Q ss_pred eeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 82 AIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
+.|+.+. ..+|. |. +|+.+.... ..+.+.+.++|.||+
T Consensus 164 ~~g~~~~---------~~~Iv--v~----T~~~l~~~~----~~~~~~~~liIvDEa 201 (472)
T 2fwr_A 164 FSGRIKE---------LKPLT--VS----TYDSAYVNA----EKLGNRFMLLIFDEV 201 (472)
T ss_dssp BSSSCBC---------CCSEE--EE----EHHHHHHTH----HHHTTTCSEEEEETG
T ss_pred ECCCcCC---------cCCEE--EE----EcHHHHHHH----HHhcCCCCEEEEECC
Confidence 7777542 22331 22 365554332 223345889999996
No 102
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.15 E-value=2.3e-10 Score=95.14 Aligned_cols=85 Identities=34% Similarity=0.534 Sum_probs=77.3
Q ss_pred CCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcH
Q psy7786 151 LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSR 230 (252)
Q Consensus 151 l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr 230 (252)
+++++.+.+.+.|+..|++.|..+++..+.++++++.++||+|||.+++.+++.. +.++||++|++
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~--------------~~~~liv~P~~ 66 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL--------------GMKSLVVTPTR 66 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH--------------TCCEEEECSSH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh--------------cCCEEEEeCCH
Confidence 4678999999999999999999999999999999999999999999999988752 45699999999
Q ss_pred HHHHHHHHHHHHHHhhCCC
Q psy7786 231 ELARQTHDIIQYYCAALPI 249 (252)
Q Consensus 231 ~~a~~i~~~l~~l~~~~~i 249 (252)
+++.|+++.+++++...++
T Consensus 67 ~L~~q~~~~~~~~~~~~~~ 85 (337)
T 2z0m_A 67 ELTRQVASHIRDIGRYMDT 85 (337)
T ss_dssp HHHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHHhhhcCC
Confidence 9999999999999877654
No 103
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.13 E-value=1e-10 Score=110.43 Aligned_cols=108 Identities=14% Similarity=0.048 Sum_probs=67.9
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCc
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGV 86 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~ 86 (252)
+++.+++++||||||+++ ++++..+.... ...++|||+|+++|+.|+.+.++.++.. .+.|+.
T Consensus 300 ~~~gli~~~TGSGKT~t~-~~l~~ll~~~~--------~~~rvLvlvpr~eL~~Q~~~~f~~f~~~--------~v~~~~ 362 (1038)
T 2w00_A 300 ESGGYIWHTTGSGKTLTS-FKAARLATELD--------FIDKVFFVVDRKDLDYQTMKEYQRFSPD--------SVNGSE 362 (1038)
T ss_dssp GGSEEEEECTTSSHHHHH-HHHHHHHTTCT--------TCCEEEEEECGGGCCHHHHHHHHTTSTT--------CSSSSC
T ss_pred CCCEEEEecCCCCHHHHH-HHHHHHHHhcC--------CCceEEEEeCcHHHHHHHHHHHHHhccc--------cccccc
Confidence 579999999999999997 77775442211 2468999999999999999988876432 123555
Q ss_pred ccCcchhhhhh-cccccCCccccccCCccccCCChhHH--HHHhhhhceeeccCC
Q psy7786 87 PMNQSLDVIKK-GIQYNDPIKTSWRAPRCILSLPDQVH--DIIRRNLRILVEGDD 138 (252)
Q Consensus 87 ~~~~~~~~l~~-~~~i~~~i~t~~~~p~~l~~~~~~~~--~~l~~~~~~~V~de~ 138 (252)
+.....+.+.+ +.+|. | ++|+++........ ..+. ...++|.||+
T Consensus 363 s~~~l~~~L~~~~~~Ii--V----tTiqkl~~~l~~~~~~~~~~-~~~lvIiDEA 410 (1038)
T 2w00_A 363 NTAGLKRNLDKDDNKII--V----TTIQKLNNLMKAESDLPVYN-QQVVFIFDEC 410 (1038)
T ss_dssp CCHHHHHHHHCSSCCEE--E----EEHHHHHHHHHHCCCCGGGG-SCEEEEEESC
T ss_pred CHHHHHHHhcCCCCCEE--E----EEHHHHHHHHhcccchhccc-cccEEEEEcc
Confidence 55455555532 34441 2 23555543322110 1122 3568888887
No 104
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.02 E-value=7.3e-10 Score=101.14 Aligned_cols=76 Identities=26% Similarity=0.311 Sum_probs=68.3
Q ss_pred HCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q psy7786 161 AKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 240 (252)
Q Consensus 161 ~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l 240 (252)
..|+ .|+++|..++|.++.|+ +..+.||+|||++|.+|++...+. +.+++|+||||+||.|+++++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~-----------g~~vlVltptreLA~qd~e~~ 144 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT-----------GKGVHVVTVNEYLASRDAEQM 144 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT-----------SSCEEEEESSHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHH
Confidence 4688 99999999999999998 899999999999999999854321 457999999999999999999
Q ss_pred HHHHhhCCCC
Q psy7786 241 QYYCAALPIG 250 (252)
Q Consensus 241 ~~l~~~~~i~ 250 (252)
..+++.+|++
T Consensus 145 ~~l~~~lgl~ 154 (844)
T 1tf5_A 145 GKIFEFLGLT 154 (844)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHhhcCCe
Confidence 9999999875
No 105
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.02 E-value=1.7e-10 Score=91.87 Aligned_cols=97 Identities=16% Similarity=0.121 Sum_probs=67.3
Q ss_pred cccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcc-eee
Q psy7786 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLR-TCL 81 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~-~~~ 81 (252)
.++++++++++++||+|||.+++.++... +.+++|++||++|+.|..+.++++ + ++ +..
T Consensus 104 ~~~~~~~~ll~~~tG~GKT~~a~~~~~~~--------------~~~~liv~P~~~L~~q~~~~~~~~----~--~~~v~~ 163 (237)
T 2fz4_A 104 RWLVDKRGCIVLPTGSGKTHVAMAAINEL--------------STPTLIVVPTLALAEQWKERLGIF----G--EEYVGE 163 (237)
T ss_dssp HHTTTSEEEEEESSSTTHHHHHHHHHHHS--------------CSCEEEEESSHHHHHHHHHHHGGG----C--GGGEEE
T ss_pred HHHhCCCEEEEeCCCCCHHHHHHHHHHHc--------------CCCEEEEeCCHHHHHHHHHHHHhC----C--CCeEEE
Confidence 35678899999999999999998887642 346999999999999998888763 4 66 666
Q ss_pred eeCCcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 82 AIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 82 ~~g~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
+.|+... ..++. +. +++.+.... ..+.....++|.||+
T Consensus 164 ~~g~~~~---------~~~i~--v~----T~~~l~~~~----~~~~~~~~llIiDEa 201 (237)
T 2fz4_A 164 FSGRIKE---------LKPLT--VS----TYDSAYVNA----EKLGNRFMLLIFDEV 201 (237)
T ss_dssp ESSSCBC---------CCSEE--EE----EHHHHHHTH----HHHTTTCSEEEEECS
T ss_pred EeCCCCC---------cCCEE--EE----eHHHHHhhH----HHhcccCCEEEEECC
Confidence 7776432 22331 22 255443322 223345789999996
No 106
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.00 E-value=3.5e-10 Score=100.56 Aligned_cols=63 Identities=17% Similarity=0.173 Sum_probs=49.8
Q ss_pred cccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeee
Q psy7786 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLA 82 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~ 82 (252)
.+.+|+|++++||||||||++|++|+++. +.+++|++||++|+.|+.+.++.+ + +++..+
T Consensus 22 ~~~~~~~~~~~a~TGtGKT~~~l~~~~~~--------------~~~~~~~~~t~~l~~q~~~~~~~l----~--~~~~~l 81 (540)
T 2vl7_A 22 ALKHGKTLLLNAKPGLGKTVFVEVLGMQL--------------KKKVLIFTRTHSQLDSIYKNAKLL----G--LKTGFL 81 (540)
T ss_dssp HHHTTCEEEEECCTTSCHHHHHHHHHHHH--------------TCEEEEEESCHHHHHHHHHHHGGG----T--CCEEEC
T ss_pred HHHcCCCEEEEcCCCCcHHHHHHHHHHhC--------------CCcEEEEcCCHHHHHHHHHHHHhc----C--CcEEEe
Confidence 45689999999999999999999998742 457999999999999999877764 3 555555
Q ss_pred eCC
Q psy7786 83 IGG 85 (252)
Q Consensus 83 ~g~ 85 (252)
.|.
T Consensus 82 ~gr 84 (540)
T 2vl7_A 82 IGK 84 (540)
T ss_dssp ---
T ss_pred cCC
Confidence 543
No 107
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.99 E-value=7.7e-10 Score=95.02 Aligned_cols=80 Identities=23% Similarity=0.213 Sum_probs=67.4
Q ss_pred HHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHH
Q psy7786 155 LVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELAR 234 (252)
Q Consensus 155 l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~ 234 (252)
+.+.+.+.....|+++|..+++..+.++++++.++||+|||.+++++.+... ..++++||++|||++|.
T Consensus 10 ~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~-----------~~~~~~lil~Pt~~L~~ 78 (414)
T 3oiy_A 10 FRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA-----------RKGKKSALVFPTVTLVK 78 (414)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH-----------TTTCCEEEEESSHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh-----------cCCCEEEEEECCHHHHH
Confidence 3444554333379999999999999999999999999999999988887654 13568999999999999
Q ss_pred HHHHHHHHHHh
Q psy7786 235 QTHDIIQYYCA 245 (252)
Q Consensus 235 ~i~~~l~~l~~ 245 (252)
|+++.++++++
T Consensus 79 q~~~~~~~~~~ 89 (414)
T 3oiy_A 79 QTLERLQKLAD 89 (414)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHcc
Confidence 99999999876
No 108
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=98.96 E-value=4e-10 Score=99.49 Aligned_cols=100 Identities=25% Similarity=0.330 Sum_probs=68.5
Q ss_pred cccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcC--CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCC
Q psy7786 142 ACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSG--RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGE 219 (252)
Q Consensus 142 ~~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~--~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~ 219 (252)
....+...++++.+.+.+...++..|+++|..+++..+.+ +++++.++||+|||.+++++++..+... ..
T Consensus 117 ~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~--------~~ 188 (508)
T 3fho_A 117 XXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS--------VP 188 (508)
T ss_dssp ----------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT--------CC
T ss_pred ccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC--------CC
Confidence 3445666778889999999999999999999999999988 9999999999999999999999866432 23
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHHhhCCC
Q psy7786 220 GPYGLIICPSRELARQTHDIIQYYCAALPI 249 (252)
Q Consensus 220 ~~~~LIf~~tr~~a~~i~~~l~~l~~~~~i 249 (252)
++++||++|+++++.|+++.+++++...++
T Consensus 189 ~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~ 218 (508)
T 3fho_A 189 KPQAICLAPSRELARQIMDVVTEMGKYTEV 218 (508)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHSTTSSC
T ss_pred CceEEEEECcHHHHHHHHHHHHHhCCccCe
Confidence 568999999999999999999998766543
No 109
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=98.95 E-value=2e-09 Score=98.94 Aligned_cols=91 Identities=24% Similarity=0.351 Sum_probs=82.6
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHhhhhh-hhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEE
Q psy7786 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA-ALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG 223 (252)
Q Consensus 145 ~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~-~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~ 223 (252)
+|.++++++.+.+.+...++..|+++|..+++. ...+++++++++||+|||..+.++++..+... +.++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----------~~~~ 71 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ----------GGKA 71 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH----------CSEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC----------CCEE
Confidence 588999999999999999999999999999998 78899999999999999999999999877643 4689
Q ss_pred EEEcCcHHHHHHHHHHHHHHHh
Q psy7786 224 LIICPSRELARQTHDIIQYYCA 245 (252)
Q Consensus 224 LIf~~tr~~a~~i~~~l~~l~~ 245 (252)
++++|+|++|.|+++.++++.+
T Consensus 72 l~i~P~raLa~q~~~~~~~l~~ 93 (720)
T 2zj8_A 72 VYIVPLKALAEEKFQEFQDWEK 93 (720)
T ss_dssp EEECSSGGGHHHHHHHTGGGGG
T ss_pred EEEcCcHHHHHHHHHHHHHHHh
Confidence 9999999999999999976554
No 110
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=98.94 E-value=4e-09 Score=96.87 Aligned_cols=92 Identities=27% Similarity=0.448 Sum_probs=82.4
Q ss_pred cccccCCCCHHHHHHHHHCCCCCChHHHHhhhhh-hhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcE
Q psy7786 144 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA-ALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPY 222 (252)
Q Consensus 144 ~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~-~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~ 222 (252)
.+|.++++++.+.+.+.+.++..|+++|..+++. ...+++++++++||+|||..+.++++..+... +.+
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----------~~~ 77 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN----------GGK 77 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS----------CSE
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC----------CCe
Confidence 4689999999999999999999999999999998 77899999999999999999999999876532 468
Q ss_pred EEEEcCcHHHHHHHHHHHHHHHh
Q psy7786 223 GLIICPSRELARQTHDIIQYYCA 245 (252)
Q Consensus 223 ~LIf~~tr~~a~~i~~~l~~l~~ 245 (252)
+++++|+|++|.|+++.++++.+
T Consensus 78 il~i~P~r~La~q~~~~~~~~~~ 100 (715)
T 2va8_A 78 AIYVTPLRALTNEKYLTFKDWEL 100 (715)
T ss_dssp EEEECSCHHHHHHHHHHHGGGGG
T ss_pred EEEEeCcHHHHHHHHHHHHHhhc
Confidence 99999999999999999965543
No 111
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=98.94 E-value=1.6e-09 Score=95.94 Aligned_cols=86 Identities=26% Similarity=0.405 Sum_probs=78.5
Q ss_pred cccccCCCCHHHHHHHHH-CCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcE
Q psy7786 144 CSFRLMKLPESLVRALEA-KGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPY 222 (252)
Q Consensus 144 ~~~~~~~l~~~l~~~l~~-~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~ 222 (252)
..|.++++++++.+.+.+ .|+..|++.|..+++..+.|+|+++.++||+|||.+|.+|.+.. ...
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~--------------~g~ 67 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL--------------NGL 67 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS--------------SSE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh--------------CCC
Confidence 468899999999999998 79999999999999999999999999999999999999998741 346
Q ss_pred EEEEcCcHHHHHHHHHHHHHH
Q psy7786 223 GLIICPSRELARQTHDIIQYY 243 (252)
Q Consensus 223 ~LIf~~tr~~a~~i~~~l~~l 243 (252)
+||++|+++++.+..+.++++
T Consensus 68 ~lvi~P~~aL~~q~~~~l~~~ 88 (523)
T 1oyw_A 68 TVVVSPLISLMKDQVDQLQAN 88 (523)
T ss_dssp EEEECSCHHHHHHHHHHHHHT
T ss_pred EEEECChHHHHHHHHHHHHHc
Confidence 999999999999999998865
No 112
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=98.93 E-value=3.9e-09 Score=94.64 Aligned_cols=83 Identities=23% Similarity=0.428 Sum_probs=75.8
Q ss_pred ccCCCCHHHHHHHHH-CCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEE
Q psy7786 147 RLMKLPESLVRALEA-KGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLI 225 (252)
Q Consensus 147 ~~~~l~~~l~~~l~~-~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LI 225 (252)
.++++++.+.+.+.+ .|+..|+++|..+++.++.|+|+++.++||+|||++|.+|.+.. ..++||
T Consensus 24 ~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~--------------~g~~lV 89 (591)
T 2v1x_A 24 EDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS--------------DGFTLV 89 (591)
T ss_dssp SCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS--------------SSEEEE
T ss_pred ccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc--------------CCcEEE
Confidence 457889999999998 59999999999999999999999999999999999999999741 357999
Q ss_pred EcCcHHHHHHHHHHHHHH
Q psy7786 226 ICPSRELARQTHDIIQYY 243 (252)
Q Consensus 226 f~~tr~~a~~i~~~l~~l 243 (252)
++|++++++|..+.++++
T Consensus 90 isP~~~L~~q~~~~l~~~ 107 (591)
T 2v1x_A 90 ICPLISLMEDQLMVLKQL 107 (591)
T ss_dssp ECSCHHHHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHhc
Confidence 999999999999999887
No 113
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=98.83 E-value=8.2e-09 Score=94.19 Aligned_cols=73 Identities=22% Similarity=0.165 Sum_probs=65.7
Q ss_pred CCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 165 KKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 165 ~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
..|+++|..++|.++.|+ +..+.||+|||++|.+|++...+. +.+++|+||||+||.|++++++.++
T Consensus 73 ~~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~-----------g~~vlVltPTreLA~Q~~e~~~~l~ 139 (853)
T 2fsf_A 73 MRHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT-----------GKGVHVVTVNDYLAQRDAENNRPLF 139 (853)
T ss_dssp CCCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT-----------SSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHHHHHHH
Confidence 389999999999999998 899999999999999999864321 4579999999999999999999999
Q ss_pred hhCCCC
Q psy7786 245 AALPIG 250 (252)
Q Consensus 245 ~~~~i~ 250 (252)
++++++
T Consensus 140 ~~lgl~ 145 (853)
T 2fsf_A 140 EFLGLT 145 (853)
T ss_dssp HHTTCC
T ss_pred HhcCCe
Confidence 999875
No 114
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=98.81 E-value=1.1e-08 Score=97.35 Aligned_cols=76 Identities=26% Similarity=0.290 Sum_probs=68.5
Q ss_pred HCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q psy7786 161 AKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 240 (252)
Q Consensus 161 ~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l 240 (252)
..|+. | ++|..++|..+.|+|++++++||+|||. +.+|.+..+.. .++++||++|||++|.|+++.+
T Consensus 53 ~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~----------~~~~~lil~PtreLa~Q~~~~l 119 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL----------KGKRCYVIFPTSLLVIQAAETI 119 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT----------TSCCEEEEESCHHHHHHHHHHH
T ss_pred hcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh----------cCCeEEEEeccHHHHHHHHHHH
Confidence 46888 9 9999999999999999999999999998 88898877653 2568999999999999999999
Q ss_pred HHHHhhCCC
Q psy7786 241 QYYCAALPI 249 (252)
Q Consensus 241 ~~l~~~~~i 249 (252)
++++..+++
T Consensus 120 ~~l~~~~~i 128 (1054)
T 1gku_B 120 RKYAEKAGV 128 (1054)
T ss_dssp HHHHTTTCC
T ss_pred HHHHhhcCC
Confidence 999988766
No 115
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=98.80 E-value=1.8e-08 Score=92.30 Aligned_cols=75 Identities=28% Similarity=0.317 Sum_probs=67.2
Q ss_pred CCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 162 KGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241 (252)
Q Consensus 162 ~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~ 241 (252)
.|+ .|+++|..++|.++.|+ +..+.||+|||+++.+|++...+. +.+++|+||||+||.|.++++.
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~-----------g~~v~VvTpTreLA~Qdae~m~ 173 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA-----------GNGVHIVTVNDYLAKRDSEWMG 173 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT-----------TSCEEEEESSHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh-----------CCCeEEEeCCHHHHHHHHHHHH
Confidence 466 99999999999999998 999999999999999999754432 4469999999999999999999
Q ss_pred HHHhhCCCC
Q psy7786 242 YYCAALPIG 250 (252)
Q Consensus 242 ~l~~~~~i~ 250 (252)
.+...+|++
T Consensus 174 ~l~~~lGLs 182 (922)
T 1nkt_A 174 RVHRFLGLQ 182 (922)
T ss_dssp HHHHHTTCC
T ss_pred HHHhhcCCe
Confidence 999999876
No 116
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=98.79 E-value=2.3e-08 Score=88.65 Aligned_cols=79 Identities=23% Similarity=0.185 Sum_probs=68.8
Q ss_pred CChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHh
Q psy7786 166 KPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCA 245 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~ 245 (252)
.|+++|..+++..+.++++++.++||+|||.+++++++..+.... ...+.++||++||++++.|+.+.++++.+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~------~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 77 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP------CGQKGKVVFFANQIPVYEQQATVFSRYFE 77 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC------SSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc------cCCCCEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999999998776532 12356899999999999999999999988
Q ss_pred hCCCC
Q psy7786 246 ALPIG 250 (252)
Q Consensus 246 ~~~i~ 250 (252)
..++.
T Consensus 78 ~~~~~ 82 (555)
T 3tbk_A 78 RLGYN 82 (555)
T ss_dssp TTTCC
T ss_pred cCCcE
Confidence 76543
No 117
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=98.77 E-value=1.9e-08 Score=91.91 Aligned_cols=87 Identities=20% Similarity=0.145 Sum_probs=70.9
Q ss_pred HHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHH
Q psy7786 157 RALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT 236 (252)
Q Consensus 157 ~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i 236 (252)
..+...++..|+++|..+++..+.+++++++++||+|||.+++++++..+.... ...+.++||++||++++.|.
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~------~~~~~~~lvl~Pt~~L~~Q~ 77 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP------QGQKGKVVFFANQIPVYEQN 77 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC------TTCCCCEEEECSSHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc------cCCCCeEEEEECCHHHHHHH
Confidence 456677889999999999999999999999999999999999999998765432 12236799999999999999
Q ss_pred HHHHHHHHhhCCC
Q psy7786 237 HDIIQYYCAALPI 249 (252)
Q Consensus 237 ~~~l~~l~~~~~i 249 (252)
.+.++++++..++
T Consensus 78 ~~~~~~~~~~~~~ 90 (696)
T 2ykg_A 78 KSVFSKYFERHGY 90 (696)
T ss_dssp HHHHHHHTTTTTC
T ss_pred HHHHHHHhccCCc
Confidence 9999999875554
No 118
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=98.76 E-value=2.7e-08 Score=88.33 Aligned_cols=79 Identities=20% Similarity=0.212 Sum_probs=67.4
Q ss_pred CCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 165 KKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 165 ~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
..|+++|..+++..+.++++++.++||+|||.++++|++..+.... ...+.++||++||++++.|+.+.++++.
T Consensus 6 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~------~~~~~~~lil~P~~~L~~q~~~~~~~~~ 79 (556)
T 4a2p_A 6 KKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP------AGRKAKVVFLATKVPVYEQQKNVFKHHF 79 (556)
T ss_dssp --CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC------SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc------ccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 4799999999999999999999999999999999999988775432 1225689999999999999999999998
Q ss_pred hhCCC
Q psy7786 245 AALPI 249 (252)
Q Consensus 245 ~~~~i 249 (252)
...++
T Consensus 80 ~~~~~ 84 (556)
T 4a2p_A 80 ERQGY 84 (556)
T ss_dssp GGGTC
T ss_pred cccCc
Confidence 86554
No 119
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=98.76 E-value=2.1e-09 Score=98.48 Aligned_cols=89 Identities=21% Similarity=0.348 Sum_probs=76.4
Q ss_pred ccccCC--CCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcE
Q psy7786 145 SFRLMK--LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPY 222 (252)
Q Consensus 145 ~~~~~~--l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~ 222 (252)
+|.+++ +++.+.+.+.+.++..|+++|..+++....+++++++++||+|||..+.++++..+.. +.+
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----------~~~ 70 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-----------GGK 70 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-----------TCC
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-----------CCc
Confidence 466777 8999999999999999999999999999999999999999999999999999877542 457
Q ss_pred EEEEcCcHHHHHHHHHHHHHHH
Q psy7786 223 GLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 223 ~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
+++++|+|++|.|+++.++++.
T Consensus 71 ~l~i~P~r~La~q~~~~~~~~~ 92 (702)
T 2p6r_A 71 SLYVVPLRALAGEKYESFKKWE 92 (702)
T ss_dssp EEEEESSHHHHHHHHHHHTTTT
T ss_pred EEEEeCcHHHHHHHHHHHHHHH
Confidence 9999999999999999986554
No 120
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.74 E-value=2.1e-08 Score=91.86 Aligned_cols=75 Identities=25% Similarity=0.307 Sum_probs=67.0
Q ss_pred CCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 162 KGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241 (252)
Q Consensus 162 ~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~ 241 (252)
.|+ .|+++|..++|.++.|+ +..+.||+|||+++.+|++...+. +.+++|++||++||.|.++++.
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~-----------G~qv~VvTPTreLA~Qdae~m~ 141 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT-----------GKGVHVVTVNDYLARRDAEWMG 141 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT-----------CSCCEEEESSHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh-----------CCCEEEEeCCHHHHHHHHHHHH
Confidence 477 99999999999999998 899999999999999999754432 4479999999999999999999
Q ss_pred HHHhhCCCC
Q psy7786 242 YYCAALPIG 250 (252)
Q Consensus 242 ~l~~~~~i~ 250 (252)
.+.+.+|++
T Consensus 142 ~l~~~lGLs 150 (997)
T 2ipc_A 142 PVYRGLGLS 150 (997)
T ss_dssp HHHHTTTCC
T ss_pred HHHHhcCCe
Confidence 999999875
No 121
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=98.69 E-value=5.7e-08 Score=90.23 Aligned_cols=83 Identities=19% Similarity=0.189 Sum_probs=68.5
Q ss_pred HCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q psy7786 161 AKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 240 (252)
Q Consensus 161 ~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l 240 (252)
..++..|+++|..+++..+.+++++++++||+|||.+++++++..+.... ...+.++||+|||++++.|+.+.+
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~------~~~~~~~Lvl~Pt~~L~~Q~~~~~ 316 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP------AGRKAKVVFLATKVPVYEQQKNVF 316 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC------SSCCCCEEEECSSHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc------ccCCCeEEEEeCCHHHHHHHHHHH
Confidence 34577899999999999999999999999999999999999988776531 123568999999999999999999
Q ss_pred HHHHhhCCC
Q psy7786 241 QYYCAALPI 249 (252)
Q Consensus 241 ~~l~~~~~i 249 (252)
+++....++
T Consensus 317 ~~~~~~~~~ 325 (797)
T 4a2q_A 317 KHHFERQGY 325 (797)
T ss_dssp HHHHGGGTC
T ss_pred HHhcccCCc
Confidence 999886554
No 122
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.68 E-value=3.4e-08 Score=94.33 Aligned_cols=71 Identities=24% Similarity=0.255 Sum_probs=62.9
Q ss_pred CCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 162 KGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241 (252)
Q Consensus 162 ~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~ 241 (252)
.++ .|+++|..++|..+.|+|++++++||+|||.+++.+++..+. .++++||++|||++|.|+++.++
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~-----------~~~~~Lil~PtreLa~Q~~~~l~ 142 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-----------KGKKSALVFPTVTLVKQTLERLQ 142 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT-----------TTCCEEEEESSHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh-----------cCCeEEEEechHHHHHHHHHHHH
Confidence 466 699999999999999999999999999999988887776541 36789999999999999999999
Q ss_pred HHH
Q psy7786 242 YYC 244 (252)
Q Consensus 242 ~l~ 244 (252)
+++
T Consensus 143 ~l~ 145 (1104)
T 4ddu_A 143 KLA 145 (1104)
T ss_dssp TTS
T ss_pred Hhh
Confidence 876
No 123
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.65 E-value=9.6e-08 Score=87.96 Aligned_cols=86 Identities=21% Similarity=0.079 Sum_probs=72.8
Q ss_pred HHHHHHHHHCCCCCChHHHHhhhhhhhcC------CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEE
Q psy7786 153 ESLVRALEAKGIKKPTPIQVQGIPAALSG------RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLII 226 (252)
Q Consensus 153 ~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~------~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf 226 (252)
+.+.+.+...++ .|++.|..+++....+ .+.+++++||+|||.+++++++..+.. +.+++|+
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~-----------g~qvlvl 423 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA-----------GFQTAFM 423 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH-----------TSCEEEE
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc-----------CCeEEEE
Confidence 444555677888 8999999999988765 589999999999999999999987643 4689999
Q ss_pred cCcHHHHHHHHHHHHHHHhhCCCC
Q psy7786 227 CPSRELARQTHDIIQYYCAALPIG 250 (252)
Q Consensus 227 ~~tr~~a~~i~~~l~~l~~~~~i~ 250 (252)
+||+++|.|+++.++++.+.++++
T Consensus 424 aPtr~La~Q~~~~l~~~~~~~gi~ 447 (780)
T 1gm5_A 424 VPTSILAIQHYRRTVESFSKFNIH 447 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTCSSCC
T ss_pred eCcHHHHHHHHHHHHHHhhhcCce
Confidence 999999999999999998866653
No 124
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=98.61 E-value=2e-08 Score=95.86 Aligned_cols=92 Identities=16% Similarity=0.099 Sum_probs=76.5
Q ss_pred ccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEE
Q psy7786 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGL 224 (252)
Q Consensus 145 ~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~L 224 (252)
.|....++..+...+...+...|+++|..+++.+..+++++++++||+|||.++.++++..+.. +.+++
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~-----------g~rvl 231 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-----------KQRVI 231 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT-----------TCEEE
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc-----------CCeEE
Confidence 4555666666655556666678999999999999999999999999999999999999876632 56899
Q ss_pred EEcCcHHHHHHHHHHHHHHHhhC
Q psy7786 225 IICPSRELARQTHDIIQYYCAAL 247 (252)
Q Consensus 225 If~~tr~~a~~i~~~l~~l~~~~ 247 (252)
|.+|||++|.|+++.++++...+
T Consensus 232 vl~PtraLa~Q~~~~l~~~~~~V 254 (1108)
T 3l9o_A 232 YTSPIKALSNQKYRELLAEFGDV 254 (1108)
T ss_dssp EEESSHHHHHHHHHHHHHHTSSE
T ss_pred EEcCcHHHHHHHHHHHHHHhCCc
Confidence 99999999999999998876533
No 125
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=98.60 E-value=1e-07 Score=74.05 Aligned_cols=79 Identities=24% Similarity=0.161 Sum_probs=65.3
Q ss_pred CCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHH-HHHHHH
Q psy7786 163 GIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQ-THDIIQ 241 (252)
Q Consensus 163 ~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~-i~~~l~ 241 (252)
....|++.|..+++..+.++++++.++||+|||..++.+++..+...... ..+.++||+||++++++| +.+.++
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~-----~~~~~~lil~p~~~L~~q~~~~~~~ 104 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKA-----SEPGKVIVLVNKVLLVEQLFRKEFQ 104 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHT-----TCCCCEEEEESSHHHHHHHHHHTHH
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccc-----cCCCcEEEEECHHHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999999888766543211 235679999999999999 788888
Q ss_pred HHHhh
Q psy7786 242 YYCAA 246 (252)
Q Consensus 242 ~l~~~ 246 (252)
++...
T Consensus 105 ~~~~~ 109 (216)
T 3b6e_A 105 PFLKK 109 (216)
T ss_dssp HHHTT
T ss_pred HHhcc
Confidence 87654
No 126
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=98.52 E-value=2.2e-07 Score=87.70 Aligned_cols=82 Identities=20% Similarity=0.201 Sum_probs=67.5
Q ss_pred CCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 163 GIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 242 (252)
Q Consensus 163 ~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~ 242 (252)
+...|+++|..+++..+.|+++++.++||+|||.+++++++..+.... ...+.++||++||++++.|+.+.+++
T Consensus 245 ~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~------~~~~~~vLvl~Pt~~L~~Q~~~~~~~ 318 (936)
T 4a2w_A 245 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP------AGRKAKVVFLATKVPVYEQQKNVFKH 318 (936)
T ss_dssp ---CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC------SSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc------ccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 466899999999999999999999999999999999999886544321 12256799999999999999999999
Q ss_pred HHhhCCCC
Q psy7786 243 YCAALPIG 250 (252)
Q Consensus 243 l~~~~~i~ 250 (252)
+.+..+++
T Consensus 319 ~~~~~~~~ 326 (936)
T 4a2w_A 319 HFERQGYS 326 (936)
T ss_dssp HHHTTTCC
T ss_pred HhcccCce
Confidence 98866543
No 127
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=98.51 E-value=5.6e-08 Score=84.50 Aligned_cols=68 Identities=21% Similarity=0.211 Sum_probs=58.5
Q ss_pred CCCCChHHHHhhhhhhhcCCcE-EEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 163 GIKKPTPIQVQGIPAALSGRDI-IGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241 (252)
Q Consensus 163 ~~~~p~~iQ~~~~p~~~~~~~~-~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~ 241 (252)
|+..|+++|. .+|..+.+++. +++++||+|||.+|++|++...... +.++||++|||++|.|+++.++
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~----------~~~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR----------RLRTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc----------CCcEEEECCCHHHHHHHHHHhc
Confidence 4567888886 68999999888 8888999999999999999876542 4679999999999999999875
No 128
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.49 E-value=2.7e-07 Score=83.17 Aligned_cols=65 Identities=25% Similarity=0.238 Sum_probs=55.8
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeC
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIG 84 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g 84 (252)
.+|+ |+.-+||+|||+++.+|++-..+. |.++.|++||++||.|-.+++..+.+.+| +++.+.+.
T Consensus 88 ~~G~--iaEM~TGEGKTLva~lp~~lnAL~-----------G~~vhVvT~ndyLA~rdae~m~~l~~~Lg--lsvg~i~~ 152 (822)
T 3jux_A 88 HEGK--VAEMKTGEGKTLAATMPIYLNALI-----------GKGVHLVTVNDYLARRDALWMGPVYLFLG--LRVGVINS 152 (822)
T ss_dssp HTTC--EEECCTTSCHHHHTHHHHHHHHTT-----------SSCEEEEESSHHHHHHHHHHHHHHHHHTT--CCEEEEET
T ss_pred hCCC--hhhccCCCCccHHHHHHHHHHHhc-----------CCceEEEeccHHHHHhHHHHHHHHHHHhC--CEEEEEcC
Confidence 3555 788999999999999999855443 55699999999999999999999999999 77777776
No 129
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=98.47 E-value=6.4e-08 Score=87.18 Aligned_cols=82 Identities=20% Similarity=0.168 Sum_probs=63.3
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcC
Q psy7786 149 MKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICP 228 (252)
Q Consensus 149 ~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~ 228 (252)
+++++...+.+... ...|+++|...+|..+.++++++.++||+|||.+|++|++..+... +.++||++|
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~----------~~~vLvl~P 223 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR----------RLRTLILAP 223 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT----------TCCEEEEES
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC----------CCeEEEEcC
Confidence 34555554444332 3678888888899999999999999999999999999999887652 468999999
Q ss_pred cHHHHHHHHHHHH
Q psy7786 229 SRELARQTHDIIQ 241 (252)
Q Consensus 229 tr~~a~~i~~~l~ 241 (252)
||++|.|+++.++
T Consensus 224 treLa~Qi~~~l~ 236 (618)
T 2whx_A 224 TRVVAAEMEEALR 236 (618)
T ss_dssp SHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhc
Confidence 9999999998875
No 130
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=98.39 E-value=8e-08 Score=87.24 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=57.6
Q ss_pred CChHHHH-----hhhhhhh------cCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHH
Q psy7786 166 KPTPIQV-----QGIPAAL------SGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELAR 234 (252)
Q Consensus 166 ~p~~iQ~-----~~~p~~~------~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~ 234 (252)
.|+++|. .++|..+ .+++++++++||+|||.+|+++++..+... +.+++|++|||++|.
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~----------~~~~lilaPTr~La~ 284 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK----------RLRTAVLAPTRVVAA 284 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT----------TCCEEEEESSHHHHH
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC----------CCcEEEEccHHHHHH
Confidence 7999999 8898888 899999999999999999999999876542 468999999999999
Q ss_pred HHHHHHHHH
Q psy7786 235 QTHDIIQYY 243 (252)
Q Consensus 235 ~i~~~l~~l 243 (252)
|+++.++.+
T Consensus 285 Q~~~~l~~~ 293 (673)
T 2wv9_A 285 EMAEALRGL 293 (673)
T ss_dssp HHHHHTTTS
T ss_pred HHHHHHhcC
Confidence 999988643
No 131
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=98.33 E-value=4.2e-07 Score=83.08 Aligned_cols=76 Identities=24% Similarity=0.190 Sum_probs=66.0
Q ss_pred CChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHH-HHHHHHHH
Q psy7786 166 KPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT-HDIIQYYC 244 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i-~~~l~~l~ 244 (252)
.|++.|..+++.++.++++++.++||+|||.+++++++..+...... ..+.++||++|+++++.|+ .+.+++++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~-----~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKA-----SEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHH-----TCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccc-----CCCCeEEEEECCHHHHHHHHHHHHHHHc
Confidence 68999999999999999999999999999999999999877654311 1235799999999999999 99999988
Q ss_pred hh
Q psy7786 245 AA 246 (252)
Q Consensus 245 ~~ 246 (252)
..
T Consensus 82 ~~ 83 (699)
T 4gl2_A 82 KK 83 (699)
T ss_dssp TT
T ss_pred Cc
Confidence 65
No 132
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.31 E-value=2.1e-06 Score=77.43 Aligned_cols=75 Identities=19% Similarity=0.191 Sum_probs=62.1
Q ss_pred CChHHHHhhh----hhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 166 KPTPIQVQGI----PAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241 (252)
Q Consensus 166 ~p~~iQ~~~~----p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~ 241 (252)
.|.+-|...+ .+...|+++++.++||+|||.+|++|.+..+... +.+++|.+||++++.|+.+.++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~----------~~kvli~t~T~~l~~Qi~~el~ 72 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER----------KLKVLYLVRTNSQEEQVIKELR 72 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH----------TCEEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc----------CCeEEEECCCHHHHHHHHHHHH
Confidence 4566677666 4556899999999999999999999999887642 4689999999999999999999
Q ss_pred HHHhhCCCC
Q psy7786 242 YYCAALPIG 250 (252)
Q Consensus 242 ~l~~~~~i~ 250 (252)
.+....+++
T Consensus 73 ~l~~~~~~~ 81 (620)
T 4a15_A 73 SLSSTMKIR 81 (620)
T ss_dssp HHHHHSCCC
T ss_pred HHhhccCeE
Confidence 998876554
No 133
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.28 E-value=3.8e-06 Score=80.70 Aligned_cols=75 Identities=28% Similarity=0.239 Sum_probs=61.9
Q ss_pred CCCCChHHHHhhhhhhhc----CC--cEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHH
Q psy7786 163 GIKKPTPIQVQGIPAALS----GR--DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT 236 (252)
Q Consensus 163 ~~~~p~~iQ~~~~p~~~~----~~--~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i 236 (252)
++ .|++.|..+++..+. ++ +.+++++||+|||..++.+.+..+. .+.+++|++||+++|.|.
T Consensus 601 ~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~-----------~g~~vlvlvPt~~La~Q~ 668 (1151)
T 2eyq_A 601 PF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD-----------NHKQVAVLVPTTLLAQQH 668 (1151)
T ss_dssp CS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT-----------TTCEEEEECSSHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH-----------hCCeEEEEechHHHHHHH
Confidence 44 479999999998876 55 8999999999999998888766432 256899999999999999
Q ss_pred HHHHHHHHhhCCC
Q psy7786 237 HDIIQYYCAALPI 249 (252)
Q Consensus 237 ~~~l~~l~~~~~i 249 (252)
++.+++....+++
T Consensus 669 ~~~~~~~~~~~~i 681 (1151)
T 2eyq_A 669 YDNFRDRFANWPV 681 (1151)
T ss_dssp HHHHHHHSTTTTC
T ss_pred HHHHHHHhhcCCC
Confidence 9999877665543
No 134
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.28 E-value=9.5e-07 Score=77.57 Aligned_cols=105 Identities=15% Similarity=0.165 Sum_probs=65.7
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeC
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIG 84 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g 84 (252)
..|++.+++.+||+|||+..+ .++..+.... ...++|||+|+ +|+.|..++++++.. .+++..+.|
T Consensus 54 ~~~~~~ilad~~GlGKT~~ai-~~i~~~~~~~--------~~~~~LIv~P~-~l~~qw~~e~~~~~~----~~~v~~~~g 119 (500)
T 1z63_A 54 KLGFGICLADDMGLGKTLQTI-AVFSDAKKEN--------ELTPSLVICPL-SVLKNWEEELSKFAP----HLRFAVFHE 119 (500)
T ss_dssp HTTCCEEECCCTTSCHHHHHH-HHHHHHHHTT--------CCSSEEEEECS-TTHHHHHHHHHHHCT----TSCEEECSS
T ss_pred hCCCCEEEEeCCCCcHHHHHH-HHHHHHHhcC--------CCCCEEEEccH-HHHHHHHHHHHHHCC----CceEEEEec
Confidence 468899999999999999864 4444444322 23469999995 588998888887643 256666666
Q ss_pred CcccCcchhhhhhcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 85 GVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 85 ~~~~~~~~~~l~~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
+... ......++ +. ++++.+..... .......++|.||+
T Consensus 120 ~~~~-----~~~~~~~i---vi---~t~~~l~~~~~----l~~~~~~~vIvDEa 158 (500)
T 1z63_A 120 DRSK-----IKLEDYDI---IL---TTYAVLLRDTR----LKEVEWKYIVIDEA 158 (500)
T ss_dssp STTS-----CCGGGSSE---EE---EEHHHHTTCHH----HHTCCEEEEEEETG
T ss_pred Cchh-----ccccCCcE---EE---eeHHHHhccch----hcCCCcCEEEEeCc
Confidence 6421 11122344 22 23666554322 22234678888986
No 135
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=98.28 E-value=2.1e-06 Score=81.35 Aligned_cols=72 Identities=19% Similarity=0.146 Sum_probs=62.8
Q ss_pred CCCCCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 162 KGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241 (252)
Q Consensus 162 ~~~~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~ 241 (252)
.++ .|+++|..+++.+..+++++++++||+|||..+.++++..+. .+.++||++|||+++.|+++.++
T Consensus 83 ~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~-----------~g~rvL~l~PtkaLa~Q~~~~l~ 150 (1010)
T 2xgj_A 83 YPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK-----------NKQRVIYTSPIKALSNQKYRELL 150 (1010)
T ss_dssp CSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH-----------TTCEEEEEESSHHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc-----------cCCeEEEECChHHHHHHHHHHHH
Confidence 344 499999999999999999999999999999999888876552 25689999999999999999998
Q ss_pred HHHh
Q psy7786 242 YYCA 245 (252)
Q Consensus 242 ~l~~ 245 (252)
++..
T Consensus 151 ~~~~ 154 (1010)
T 2xgj_A 151 AEFG 154 (1010)
T ss_dssp HHHS
T ss_pred HHhC
Confidence 8765
No 136
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=98.26 E-value=2.2e-06 Score=69.65 Aligned_cols=70 Identities=24% Similarity=0.186 Sum_probs=59.2
Q ss_pred CChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHh
Q psy7786 166 KPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCA 245 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~ 245 (252)
.|++.|..+++..+.+.+.++++++|+|||..++......+.. ...++||++||+++++|..+.+++++.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~----------~~~~~lil~Pt~~L~~q~~~~l~~~~~ 182 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN----------YEGKILIIVPTTALTTQMADDFVDYRL 182 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH----------CSSEEEEECSSHHHHHHHHHHHHHHTS
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc----------CCCeEEEEECCHHHHHHHHHHHHHhcc
Confidence 7899999999998888888999999999999987766654432 134799999999999999999998754
No 137
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=98.18 E-value=2.9e-06 Score=74.70 Aligned_cols=70 Identities=24% Similarity=0.186 Sum_probs=61.0
Q ss_pred CChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHh
Q psy7786 166 KPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCA 245 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~ 245 (252)
.|++.|..+++..+.+.+.+++++||+|||..++.++...+.. ...++||++||++++.|..+.+++++.
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~----------~~~~vlvl~P~~~L~~Q~~~~~~~~~~ 182 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN----------YEGKILIIVPTTALTTQMADDFVDYRL 182 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH----------CSSEEEEEESSHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC----------CCCeEEEEECcHHHHHHHHHHHHHhhc
Confidence 7899999999999999999999999999999998877765542 134899999999999999999988744
No 138
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.14 E-value=1.1e-06 Score=83.08 Aligned_cols=110 Identities=15% Similarity=0.055 Sum_probs=65.5
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCc
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGV 86 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~ 86 (252)
+.+++++.+||+|||..++..+...+.... .-++|||+|+ .|+.|..+.+.+. .+ +.+..+.|+.
T Consensus 170 ~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~---------~~rvLIVvP~-sLl~Qw~~E~~~~---f~--l~v~v~~~~~ 234 (968)
T 3dmq_A 170 APRVLLADEVGLGKTIEAGMILHQQLLSGA---------AERVLIIVPE-TLQHQWLVEMLRR---FN--LRFALFDDER 234 (968)
T ss_dssp SCEEEECCCTTSCHHHHHHHHHHHHHHTSS---------CCCEEEECCT-TTHHHHHHHHHHH---SC--CCCEECCHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHHhCC---------CCeEEEEeCH-HHHHHHHHHHHHH---hC--CCEEEEccch
Confidence 557899999999999998777766553322 2369999999 9998887777432 24 4555554442
Q ss_pred ccCcchhhhh---hcccccCCccccccCCccccCCChhHHHHHhhhhceeeccCC
Q psy7786 87 PMNQSLDVIK---KGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD 138 (252)
Q Consensus 87 ~~~~~~~~l~---~~~~i~~~i~t~~~~p~~l~~~~~~~~~~l~~~~~~~V~de~ 138 (252)
... ....-. ...++ +. +++..+................++|.||+
T Consensus 235 ~~~-~~~~~~~~~~~~dI---vI---~T~~~L~~~~~~~~~l~~~~~dlVIvDEA 282 (968)
T 3dmq_A 235 YAE-AQHDAYNPFDTEQL---VI---CSLDFARRSKQRLEHLCEAEWDLLVVDEA 282 (968)
T ss_dssp HHH-HHHTTCSSSTTCSE---EE---ECHHHHHTSTTTTHHHHTSCCCEEEECCS
T ss_pred hhh-hhhhcccccccCCE---EE---EcHHHHhhCHHHHHHhhhcCCCEEEehhh
Confidence 111 100000 11222 11 23555554444434444455788999996
No 139
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.14 E-value=1.8e-06 Score=76.90 Aligned_cols=70 Identities=21% Similarity=0.007 Sum_probs=58.6
Q ss_pred CChHHHHhhhh----hhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 166 KPTPIQVQGIP----AALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241 (252)
Q Consensus 166 ~p~~iQ~~~~p----~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~ 241 (252)
.|.+.|..++. +...++++++.++||+|||.+|++|.+. .+.+++|.+||+++++|+.+.++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~--------------~~~~v~i~~pt~~l~~q~~~~~~ 68 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE--------------VKPKVLFVVRTHNEFYPIYRDLT 68 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH--------------HCSEEEEEESSGGGHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh--------------CCCeEEEEcCCHHHHHHHHHHHH
Confidence 46777877664 4557899999999999999999999996 15689999999999999999998
Q ss_pred HHHhhCCC
Q psy7786 242 YYCAALPI 249 (252)
Q Consensus 242 ~l~~~~~i 249 (252)
++.+..++
T Consensus 69 ~l~~~~~~ 76 (551)
T 3crv_A 69 KIREKRNI 76 (551)
T ss_dssp TCCCSSCC
T ss_pred HHhhhcCc
Confidence 87665544
No 140
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=98.13 E-value=1.8e-06 Score=74.72 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=48.9
Q ss_pred hhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 177 AALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 242 (252)
Q Consensus 177 ~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~ 242 (252)
..+.|++++++++||+|||.+|++|++..+... +.+++|++|||++|.|+++.++.
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~----------~~~~lil~Ptr~La~Q~~~~l~~ 59 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR----------RLRTLVLAPTRVVLSEMKEAFHG 59 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHTTT
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc----------CCeEEEEcchHHHHHHHHHHHhc
Confidence 356789999999999999999999999876642 46899999999999999998864
No 141
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=98.12 E-value=2.9e-06 Score=80.38 Aligned_cols=68 Identities=19% Similarity=0.159 Sum_probs=59.3
Q ss_pred CChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 166 KPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
.|+++|..+++.++.++++++.++||+|||.++.+++..... .+.++||++|+|+++.|+++.++++.
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~-----------~g~~vlvl~PtraLa~Q~~~~l~~~~ 106 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR-----------NMTKTIYTSPIKALSNQKFRDFKETF 106 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH-----------TTCEEEEEESCGGGHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh-----------cCCeEEEEeCCHHHHHHHHHHHHHHc
Confidence 479999999999999999999999999999998887765432 25689999999999999999998753
No 142
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.11 E-value=9.8e-06 Score=63.95 Aligned_cols=71 Identities=17% Similarity=0.066 Sum_probs=58.5
Q ss_pred CCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 165 KKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241 (252)
Q Consensus 165 ~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~ 241 (252)
...+++|...++....|+++++.++||+|||..+..+++........ ....++++.+|+|+++.++++.+.
T Consensus 60 ~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~------~~~~~~l~~~p~~~la~q~~~~~~ 130 (235)
T 3llm_A 60 LPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR------AAECNIVVTQPRRISAVSVAERVA 130 (235)
T ss_dssp SGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC------GGGCEEEEEESSHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC------CCceEEEEeccchHHHHHHHHHHH
Confidence 34688999999999999999999999999999888888776554321 124589999999999999987765
No 143
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.10 E-value=2e-06 Score=77.34 Aligned_cols=63 Identities=21% Similarity=0.180 Sum_probs=51.9
Q ss_pred cccCCCcEEEEcCCCchHH--HHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCC
Q psy7786 3 TYRNSRDIIGIAFTGSGKT--LVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALP 74 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT--~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~ 74 (252)
.+++++++++++++||||| ++++++.+..+.. ..+.++++++||+++|.++.+.+...+..++
T Consensus 160 ~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~---------~~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 160 VALTRRISVISGGPGTGKTTTVAKLLAALIQMAD---------GERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp HHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS---------SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred HHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh---------cCCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 4567899999999999999 7788888865421 1356899999999999999998888777765
No 144
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.08 E-value=1.2e-05 Score=69.58 Aligned_cols=68 Identities=19% Similarity=0.170 Sum_probs=60.0
Q ss_pred CChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 166 KPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
.|.+.|..+++..+.+ +.++.+++|+|||..++.+++..+.. .+.++||+||+++++.|..+.++++.
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~----------~~~~~liv~P~~~L~~q~~~~~~~~~ 76 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK----------YGGKVLMLAPTKPLVLQHAESFRRLF 76 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH----------SCSCEEEECSSHHHHHHHHHHHHHHB
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc----------CCCeEEEEECCHHHHHHHHHHHHHHh
Confidence 5889999999999998 99999999999999999988876552 25579999999999999999998775
No 145
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=98.07 E-value=2.9e-06 Score=73.83 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=48.4
Q ss_pred hhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 176 PAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241 (252)
Q Consensus 176 p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~ 241 (252)
.....+++++++++||+|||.+|++|++..+... +.++||++|||++|.|+++.++
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~----------~~~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ----------RLRTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT----------TCCEEEEECSHHHHHHHHHHTT
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC----------CCcEEEECchHHHHHHHHHHhc
Confidence 3455678999999999999999999999877642 4679999999999999999875
No 146
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=98.00 E-value=8.6e-06 Score=70.90 Aligned_cols=64 Identities=25% Similarity=0.223 Sum_probs=57.1
Q ss_pred CChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 166 KPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l 243 (252)
.|++.|..+++..+.+.+.+++++||+|||..++.++... +.++||+||+++++.|..+.++++
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~--------------~~~~Lvl~P~~~L~~Q~~~~~~~~ 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------------STPTLIVVPTLALAEQWKERLGIF 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH--------------CSCEEEEESSHHHHHHHHHHGGGG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc--------------CCCEEEEECCHHHHHHHHHHHHhC
Confidence 6899999999999999999999999999999988877642 346999999999999999998875
No 147
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.97 E-value=2.5e-05 Score=72.11 Aligned_cols=90 Identities=19% Similarity=0.156 Sum_probs=69.9
Q ss_pred ccccccCCCCHHHHHHHHHCCCCCChHHHHhhhhhhhcC-CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCc
Q psy7786 143 CCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSG-RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGP 221 (252)
Q Consensus 143 ~~~~~~~~l~~~l~~~l~~~~~~~p~~iQ~~~~p~~~~~-~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~ 221 (252)
...|.++++++.+.+.+...+ ..|+.+|...++..+.+ ++++++++||+|||. ++|.+....... ...+.
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~------~~~g~ 141 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMP------HLENT 141 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCG------GGGTC
T ss_pred CCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccc------cCCCc
Confidence 457999999999999998887 78999999999887754 679999999999999 466552211110 11256
Q ss_pred EEEEEcCcHHHHHHHHHHHH
Q psy7786 222 YGLIICPSRELARQTHDIIQ 241 (252)
Q Consensus 222 ~~LIf~~tr~~a~~i~~~l~ 241 (252)
++++.+|+|++|.++++.+.
T Consensus 142 ~ilvl~P~r~La~q~~~~l~ 161 (773)
T 2xau_A 142 QVACTQPRRVAAMSVAQRVA 161 (773)
T ss_dssp EEEEEESCHHHHHHHHHHHH
T ss_pred eEEecCchHHHHHHHHHHHH
Confidence 79999999999999987653
No 148
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.97 E-value=1.1e-05 Score=71.59 Aligned_cols=64 Identities=16% Similarity=0.099 Sum_probs=52.9
Q ss_pred CChHHHHhhhh----hhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 166 KPTPIQVQGIP----AALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241 (252)
Q Consensus 166 ~p~~iQ~~~~p----~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~ 241 (252)
.|.+.|..++. +...++++++.++||+|||.+|++|.+.. +.+++|.+||+++++|+.+.++
T Consensus 7 ~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~--------------~~~~~~~~~t~~l~~q~~~~~~ 72 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL--------------KKKVLIFTRTHSQLDSIYKNAK 72 (540)
T ss_dssp --CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH--------------TCEEEEEESCHHHHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC--------------CCcEEEEcCCHHHHHHHHHHHH
Confidence 67888888754 45678999999999999999999998742 4579999999999999998887
Q ss_pred HH
Q psy7786 242 YY 243 (252)
Q Consensus 242 ~l 243 (252)
++
T Consensus 73 ~l 74 (540)
T 2vl7_A 73 LL 74 (540)
T ss_dssp GG
T ss_pred hc
Confidence 64
No 149
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=97.94 E-value=7.2e-06 Score=70.74 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=44.7
Q ss_pred CCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 181 GRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241 (252)
Q Consensus 181 ~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~ 241 (252)
+++++++++||+|||.+++++++..+... +.+++|++|||++|+|+++.++
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~~----------g~~~lvl~Pt~~La~Q~~~~~~ 52 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVKK----------RLRTVILAPTRVVASEMYEALR 52 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHHT----------TCCEEEEESSHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHhC----------CCCEEEECcHHHHHHHHHHHhC
Confidence 68899999999999999999999766542 4689999999999999998774
No 150
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.87 E-value=3e-05 Score=61.28 Aligned_cols=65 Identities=25% Similarity=0.209 Sum_probs=55.4
Q ss_pred CCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 165 KKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243 (252)
Q Consensus 165 ~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l 243 (252)
..|++.|..++...+.+.+.++++++|+|||..++...... +.+++|++|+++++.|+.+.++++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~--------------~~~~liv~P~~~L~~q~~~~~~~~ 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------------STPTLIVVPTLALAEQWKERLGIF 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS--------------CSCEEEEESSHHHHHHHHHHHGGG
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc--------------CCCEEEEeCCHHHHHHHHHHHHhC
Confidence 37899999999999988899999999999999877665431 346999999999999999988764
No 151
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=97.70 E-value=1.7e-05 Score=71.47 Aligned_cols=59 Identities=19% Similarity=-0.009 Sum_probs=46.9
Q ss_pred HHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 170 IQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 242 (252)
Q Consensus 170 iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~ 242 (252)
.|...++....+++++++++||+|||.++.++++. .+.+++|++|||++|.|+++.+.+
T Consensus 221 ~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~--------------~g~~vLVl~PTReLA~Qia~~l~~ 279 (666)
T 3o8b_A 221 DNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA--------------QGYKVLVLNPSVAATLGFGAYMSK 279 (666)
T ss_dssp CCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH--------------TTCCEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH--------------CCCeEEEEcchHHHHHHHHHHHHH
Confidence 34444444557789999999999999999988774 145799999999999999987654
No 152
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.0002 Score=66.47 Aligned_cols=71 Identities=18% Similarity=0.169 Sum_probs=49.2
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeC
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIG 84 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g 84 (252)
.+|++.+++.++|+|||+..+..+...+.... ..-.+|||+| ..|..|-.+.++++. + ++++.+..|
T Consensus 253 ~~~~~~ILademGlGKT~~ai~~i~~l~~~~~--------~~~~~LIV~P-~sll~qW~~E~~~~~---p-~~~v~~~~g 319 (800)
T 3mwy_W 253 SKGDNGILADEMGLGKTVQTVAFISWLIFARR--------QNGPHIIVVP-LSTMPAWLDTFEKWA---P-DLNCICYMG 319 (800)
T ss_dssp TTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS--------CCSCEEEECC-TTTHHHHHHHHHHHS---T-TCCEEECCC
T ss_pred hcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC--------CCCCEEEEEC-chHHHHHHHHHHHHC---C-CceEEEEeC
Confidence 47889999999999999887655544333322 1334899999 667778777776664 2 367777777
Q ss_pred Cccc
Q psy7786 85 GVPM 88 (252)
Q Consensus 85 ~~~~ 88 (252)
+...
T Consensus 320 ~~~~ 323 (800)
T 3mwy_W 320 NQKS 323 (800)
T ss_dssp SSHH
T ss_pred CHHH
Confidence 6443
No 153
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=97.33 E-value=0.0013 Score=59.58 Aligned_cols=73 Identities=27% Similarity=0.278 Sum_probs=62.7
Q ss_pred CCChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 165 KKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 165 ~~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
..|..+|....-++..|+ +....||+|||+.+.+|.+-..+. +..+.|+++|+.||.+-++++..+.
T Consensus 74 ~r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~-----------G~~vhVvT~ndyLA~rdae~m~~l~ 140 (822)
T 3jux_A 74 MRPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI-----------GKGVHLVTVNDYLARRDALWMGPVY 140 (822)
T ss_dssp CCCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT-----------SSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc-----------CCceEEEeccHHHHHhHHHHHHHHH
Confidence 368999998877777776 788899999999999998754432 5569999999999999999999999
Q ss_pred hhCCCC
Q psy7786 245 AALPIG 250 (252)
Q Consensus 245 ~~~~i~ 250 (252)
+.+|++
T Consensus 141 ~~Lgls 146 (822)
T 3jux_A 141 LFLGLR 146 (822)
T ss_dssp HHTTCC
T ss_pred HHhCCE
Confidence 999975
No 154
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=97.32 E-value=7.8e-05 Score=66.79 Aligned_cols=77 Identities=19% Similarity=0.147 Sum_probs=45.4
Q ss_pred CChHHHHhhhhhhhc----C-CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHH-HH
Q psy7786 166 KPTPIQVQGIPAALS----G-RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH-DI 239 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~----~-~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~-~~ 239 (252)
.|.+.|..+++.++. + ++++++++||+|||... +.++..+...... ......+.++||+|||++++.|.. +.
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~-~~~~~~l~~~~~~-~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVA-FQISWKLWSARWN-RTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH-HHHHHHHHHTTCC-SSCSSSCCCEEEEEC-----------C
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHH-HHHHHHHHhcccc-cccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 688999999988775 4 66899999999999984 4555555442100 000113578999999999999998 76
Q ss_pred HHHHH
Q psy7786 240 IQYYC 244 (252)
Q Consensus 240 l~~l~ 244 (252)
++.++
T Consensus 256 ~~~~~ 260 (590)
T 3h1t_A 256 FTPFG 260 (590)
T ss_dssp CTTTC
T ss_pred HHhcc
Confidence 66554
No 155
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=97.21 E-value=0.00092 Score=60.52 Aligned_cols=74 Identities=22% Similarity=0.191 Sum_probs=50.1
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeC
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIG 84 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g 84 (252)
..++..+++.++|+|||+..+..+...+...... .....++|||+|+ +|+.|-.++++++... . +.+..++|
T Consensus 77 ~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~----~p~~~~~LiV~P~-sll~qW~~E~~~~~~~-~--~~~~~~~~ 148 (644)
T 1z3i_X 77 ENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDC----KPEIDKVIVVSPS-SLVRNWYNEVGKWLGG-R--VQPVAIDG 148 (644)
T ss_dssp TTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTS----SCSCSCEEEEECH-HHHHHHHHHHHHHHGG-G--CCEEEECS
T ss_pred cCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccc----cCCCCcEEEEecH-HHHHHHHHHHHHHcCC-C--eeEEEEeC
Confidence 4567899999999999998776665544322111 0113358999997 7888888888877654 2 55666666
Q ss_pred Cc
Q psy7786 85 GV 86 (252)
Q Consensus 85 ~~ 86 (252)
|.
T Consensus 149 g~ 150 (644)
T 1z3i_X 149 GS 150 (644)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 156
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=97.16 E-value=0.00024 Score=67.41 Aligned_cols=71 Identities=21% Similarity=0.103 Sum_probs=56.0
Q ss_pred CChHHHHhhhhhhhc--------------CCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHH
Q psy7786 166 KPTPIQVQGIPAALS--------------GRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRE 231 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~--------------~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~ 231 (252)
.|.+.|..+++.++. +++.++.+++|+|||... ++++..+.. . ....++||+||+++
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~-~-------~~~~rvLvlvpr~e 341 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE-L-------DFIDKVFFVVDRKD 341 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT-C-------TTCCEEEEEECGGG
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh-c-------CCCceEEEEeCcHH
Confidence 489999999988764 368999999999999986 555543321 1 22468999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy7786 232 LARQTHDIIQYYCA 245 (252)
Q Consensus 232 ~a~~i~~~l~~l~~ 245 (252)
|+.|+.+.+++++.
T Consensus 342 L~~Q~~~~f~~f~~ 355 (1038)
T 2w00_A 342 LDYQTMKEYQRFSP 355 (1038)
T ss_dssp CCHHHHHHHHTTST
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887764
No 157
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=97.11 E-value=0.00048 Score=62.55 Aligned_cols=57 Identities=19% Similarity=0.110 Sum_probs=43.1
Q ss_pred hhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 173 QGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 173 ~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
......+.+++++++++||+|||. +.+..+... .++++.+|||++|.|+++.+++++
T Consensus 147 ~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~-----------~~gl~l~PtR~LA~Qi~~~l~~~g 203 (677)
T 3rc3_A 147 YPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA-----------KSGVYCGPLKLLAHEIFEKSNAAG 203 (677)
T ss_dssp CHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHS-----------SSEEEEESSHHHHHHHHHHHHHTT
T ss_pred CHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc-----------CCeEEEeCHHHHHHHHHHHHHhcC
Confidence 334456789999999999999998 333333332 235889999999999999988753
No 158
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.02 E-value=0.0013 Score=59.18 Aligned_cols=73 Identities=22% Similarity=0.201 Sum_probs=59.6
Q ss_pred hHHHHhhhhhhhcCCcEEEEccCCCchh--HHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHh
Q psy7786 168 TPIQVQGIPAALSGRDIIGIAFTGSGKT--LVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCA 245 (252)
Q Consensus 168 ~~iQ~~~~p~~~~~~~~~~~~~~g~gKt--~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~ 245 (252)
++.|..+++..+.++.+++.+++|+||| ..++++.+..+.. ..+.++++.+||++.|.++.+.+...+.
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~---------~~~~~vll~APTg~AA~~L~e~~~~~~~ 221 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD---------GERCRIRLAAPTGKAAARLTESLGKALR 221 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS---------SCCCCEEEEBSSHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh---------cCCCeEEEEeCChhHHHHHHHHHHHHHh
Confidence 6789999999999999999999999999 5677777654311 1245799999999999999999988777
Q ss_pred hCCC
Q psy7786 246 ALPI 249 (252)
Q Consensus 246 ~~~i 249 (252)
.+++
T Consensus 222 ~l~l 225 (608)
T 1w36_D 222 QLPL 225 (608)
T ss_dssp HSSC
T ss_pred cCCC
Confidence 6653
No 159
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=96.28 E-value=0.0059 Score=53.30 Aligned_cols=73 Identities=22% Similarity=0.294 Sum_probs=53.0
Q ss_pred CChHHHHhhhhhh----hcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 166 KPTPIQVQGIPAA----LSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241 (252)
Q Consensus 166 ~p~~iQ~~~~p~~----~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~ 241 (252)
.+.+.|..++..+ ..+.+.++..++|.|||...+ ..+..+... ....++||+||+ .++.|..++++
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai-~~i~~~~~~--------~~~~~~LIv~P~-~l~~qw~~e~~ 106 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTI-AVFSDAKKE--------NELTPSLVICPL-SVLKNWEEELS 106 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHH-HHHHHHHHT--------TCCSSEEEEECS-TTHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHH-HHHHHHHhc--------CCCCCEEEEccH-HHHHHHHHHHH
Confidence 4778888887655 357889999999999999854 344444322 123569999995 58899999999
Q ss_pred HHHhhCC
Q psy7786 242 YYCAALP 248 (252)
Q Consensus 242 ~l~~~~~ 248 (252)
++...+.
T Consensus 107 ~~~~~~~ 113 (500)
T 1z63_A 107 KFAPHLR 113 (500)
T ss_dssp HHCTTSC
T ss_pred HHCCCce
Confidence 8875443
No 160
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.18 E-value=0.0092 Score=53.83 Aligned_cols=57 Identities=21% Similarity=0.156 Sum_probs=40.4
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 70 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~ 70 (252)
+..++|.|+.|||||.+-+-=+.. +...... ..-+.|++++|+..|.++.+.+..+.
T Consensus 22 ~~~~lV~a~aGsGKT~~l~~ri~~-l~~~~~~------~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLVHRIAW-LMSVENC------SPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp SSCEEEEECTTSCHHHHHHHHHHH-HHHTSCC------CGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHH-HHHhCCC------ChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 567899999999999654433333 3332110 12369999999999999999887764
No 161
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.55 E-value=0.023 Score=51.34 Aligned_cols=52 Identities=23% Similarity=0.275 Sum_probs=36.3
Q ss_pred CCCc-EEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 6 NSRD-IIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 68 (252)
Q Consensus 6 ~g~d-~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~ 68 (252)
+.+| .+|++|.|||||.+-+ -++..+... +.++|+.+||..-+.++.+.+..
T Consensus 203 ~~~~~~lI~GPPGTGKT~ti~-~~I~~l~~~----------~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 203 SQKELAIIHGPPGTGKTTTVV-EIILQAVKQ----------GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp HCSSEEEEECCTTSCHHHHHH-HHHHHHHHT----------TCCEEEEESSHHHHHHHHHHHHH
T ss_pred cCCCceEEECCCCCCHHHHHH-HHHHHHHhC----------CCeEEEEcCchHHHHHHHHHHHh
Confidence 3454 5899999999997643 333333332 45799999999988887766543
No 162
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.31 E-value=0.035 Score=51.49 Aligned_cols=55 Identities=15% Similarity=0.051 Sum_probs=39.6
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l 69 (252)
+++.-.++++|.|||||.+. .-++..+.... +.++|+++||..-+.++.+.+...
T Consensus 373 l~~~~~lI~GppGTGKT~~i-~~~i~~l~~~~---------~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 373 LQRPLSLIQGPPGTGKTVTS-ATIVYHLSKIH---------KDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp TTCSEEEEECSTTSSHHHHH-HHHHHHHHHHH---------CCCEEEEESSHHHHHHHHHHHHHT
T ss_pred hcCCCEEEECCCCCCHHHHH-HHHHHHHHhCC---------CCeEEEEcCcHHHHHHHHHHHHhh
Confidence 34555899999999999654 33444443322 346999999999999998877654
No 163
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.22 E-value=0.029 Score=50.51 Aligned_cols=54 Identities=20% Similarity=0.115 Sum_probs=38.6
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 68 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~ 68 (252)
+++.-.++++|+|||||.+. .-++..+... .+.++|+++||..-+.++.+.+..
T Consensus 193 l~~~~~li~GppGTGKT~~~-~~~i~~l~~~---------~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 193 LQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ---------GNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp HTCSEEEEECCTTSCHHHHH-HHHHHHHHTS---------SSCCEEEEESSHHHHHHHHHHHHT
T ss_pred hcCCCeEEECCCCCCHHHHH-HHHHHHHHHc---------CCCeEEEEeCcHHHHHHHHHHHHh
Confidence 34556899999999999653 3344444321 245799999999999888777654
No 164
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=95.16 E-value=0.034 Score=52.72 Aligned_cols=67 Identities=21% Similarity=0.107 Sum_probs=49.7
Q ss_pred CChHHHHhhhhhhhc--CCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 166 KPTPIQVQGIPAALS--GRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 242 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~--~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~ 242 (252)
.|.+.|..++...+. +...+++.++|.|||...+..+...+.. +...++||+||+ .++.|..+.+.+
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~---------g~~~rvLIVvP~-sLl~Qw~~E~~~ 221 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLS---------GAAERVLIIVPE-TLQHQWLVEMLR 221 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHT---------SSCCCEEEECCT-TTHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHh---------CCCCeEEEEeCH-HHHHHHHHHHHH
Confidence 578899998877665 3578888999999999875554433322 123479999999 999888877743
No 165
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.12 E-value=0.043 Score=50.29 Aligned_cols=57 Identities=25% Similarity=0.195 Sum_probs=40.2
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 70 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~ 70 (252)
+..++|.|..|||||.+-+-=+...+..... ..-+.|+++.|+..|.++.+.+..+.
T Consensus 24 ~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~-------~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 24 EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHV-------APWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp SSCEEEEECTTSCHHHHHHHHHHHHHHTTCC-------CGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCHHHHHHHHHHHHHHhcCC-------CHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 4678999999999996654333333322111 12368999999999999988887764
No 166
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.98 E-value=0.044 Score=49.72 Aligned_cols=57 Identities=18% Similarity=0.073 Sum_probs=40.8
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 70 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~ 70 (252)
+..++|.|..|||||.+-+-=+...+..... ..-+.|+++.|+..|.++.+.+....
T Consensus 15 ~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~-------~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 15 TGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-------QARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp SSEEEECCCTTSCHHHHHHHHHHHHHHHHCC-------CGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCChHHHHHHHHHHHHHhcCC-------CHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 5678999999999996554434333332221 12369999999999999998887653
No 167
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.72 E-value=0.047 Score=53.09 Aligned_cols=58 Identities=26% Similarity=0.249 Sum_probs=41.5
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 68 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~ 68 (252)
.+++++|.|..|||||.+.+-=++..+..... ..+.-+.|++++|+..|..+.+.+..
T Consensus 22 ~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~-----~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 22 TGQDILVAAAAGSGKTAVLVERMIRKITAEEN-----PIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSS-----CCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCC-----CCCccceEEEeccHHHHHHHHHHHHH
Confidence 47899999999999997665445544433110 01233699999999999999888766
No 168
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.60 E-value=0.054 Score=50.18 Aligned_cols=54 Identities=20% Similarity=0.115 Sum_probs=38.5
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 68 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~ 68 (252)
+++.-.++++|+|||||.+. .-++..+... .+.++|+++||..-|.++.+.+..
T Consensus 369 l~~~~~lI~GppGTGKT~ti-~~~i~~l~~~---------~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 369 LQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ---------GNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp HTSSEEEEECCTTSCHHHHH-HHHHHHHHTT---------CSSCEEEEESSHHHHHHHHHHHHT
T ss_pred ccCCeEEEEcCCCCCHHHHH-HHHHHHHHHc---------CCCcEEEEcCcHHHHHHHHHHHHH
Confidence 34556799999999999653 3344444331 245799999999999888776654
No 169
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=94.49 E-value=0.074 Score=48.23 Aligned_cols=48 Identities=21% Similarity=0.251 Sum_probs=37.0
Q ss_pred cEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 70 (252)
Q Consensus 9 d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~ 70 (252)
+.++.+.||||||+++.- ++... . . .+|||+|+..+|.|.++.++.|.
T Consensus 30 ~~~l~g~tgs~kt~~~a~-~~~~~---~---------~-~~lvv~~~~~~A~ql~~el~~~~ 77 (664)
T 1c4o_A 30 FVTLLGATGTGKTVTMAK-VIEAL---G---------R-PALVLAPNKILAAQLAAEFRELF 77 (664)
T ss_dssp EEEEEECTTSCHHHHHHH-HHHHH---T---------C-CEEEEESSHHHHHHHHHHHHHHC
T ss_pred cEEEEcCCCcHHHHHHHH-HHHHh---C---------C-CEEEEecCHHHHHHHHHHHHHHC
Confidence 567889999999976642 22222 1 1 38999999999999999999884
No 170
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.22 E-value=0.087 Score=45.49 Aligned_cols=48 Identities=10% Similarity=0.090 Sum_probs=33.7
Q ss_pred cEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q psy7786 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 66 (252)
Q Consensus 9 d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~ 66 (252)
.+++.++.|||||. .+.-++..+.... ...+++++||...|..+.+.+
T Consensus 47 ~~li~G~aGTGKT~-ll~~~~~~l~~~~---------~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 47 HVTINGPAGTGATT-LTKFIIEALISTG---------ETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp EEEEECCTTSCHHH-HHHHHHHHHHHTT---------CCCEEEEESSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHH-HHHHHHHHHHhcC---------CceEEEecCcHHHHHHHHhhh
Confidence 89999999999994 3344455554432 135899999998887665543
No 171
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.04 E-value=0.1 Score=46.40 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=35.7
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHD 64 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~ 64 (252)
+++++.+++.++.|||||.. +..++..+.. .+.++++++||...|.++.+
T Consensus 201 ~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~----------~g~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 201 LAGHRLVVLTGGPGTGKSTT-TKAVADLAES----------LGLEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp HTTCSEEEEECCTTSCHHHH-HHHHHHHHHH----------TTCCEEEEESSHHHHHHHHH
T ss_pred HHhCCEEEEEcCCCCCHHHH-HHHHHHHHHh----------cCCeEEEecCcHHHHHHhHh
Confidence 45678899999999999954 2233333322 24568999999998877655
No 172
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.69 E-value=0.057 Score=46.29 Aligned_cols=42 Identities=21% Similarity=0.247 Sum_probs=30.3
Q ss_pred EEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 10 IIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67 (252)
Q Consensus 10 ~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~ 67 (252)
.++.++.|||||.... +.+ .. -..+|++||++++.++.+.+.
T Consensus 164 ~~I~G~aGsGKTt~I~----~~~-~~-----------~~~lVlTpT~~aa~~l~~kl~ 205 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEIL----SRV-NF-----------EEDLILVPGRQAAEMIRRRAN 205 (446)
T ss_dssp EEEEECTTSCHHHHHH----HHC-CT-----------TTCEEEESCHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHH----HHh-cc-----------CCeEEEeCCHHHHHHHHHHhh
Confidence 5789999999996542 211 11 135999999999988877664
No 173
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=93.34 E-value=0.14 Score=47.40 Aligned_cols=74 Identities=20% Similarity=0.146 Sum_probs=51.3
Q ss_pred CChHHHHhhhhhhh----cCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHH
Q psy7786 166 KPTPIQVQGIPAAL----SGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~----~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~ 241 (252)
.+.+.|..++..+. .+.+.++..++|.|||...+..+.. +.... .....+||+|| ..++.|..++++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~-l~~~~-------~~~~~~LIV~P-~sll~qW~~E~~ 306 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISW-LIFAR-------RQNGPHIIVVP-LSTMPAWLDTFE 306 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHH-HHHHH-------SCCSCEEEECC-TTTHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHH-HHHhc-------CCCCCEEEEEC-chHHHHHHHHHH
Confidence 45667888876554 7789999999999999875443332 22221 12345899999 667888888888
Q ss_pred HHHhhCC
Q psy7786 242 YYCAALP 248 (252)
Q Consensus 242 ~l~~~~~ 248 (252)
++++.+.
T Consensus 307 ~~~p~~~ 313 (800)
T 3mwy_W 307 KWAPDLN 313 (800)
T ss_dssp HHSTTCC
T ss_pred HHCCCce
Confidence 8875543
No 174
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=93.34 E-value=0.1 Score=44.59 Aligned_cols=45 Identities=20% Similarity=0.343 Sum_probs=33.1
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELAR 60 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~ 60 (252)
....++++.++||||||.+. -+++..+... +..++|+=|..|+..
T Consensus 51 ~~~~h~~i~G~tGsGKs~~~-~~li~~~~~~----------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 51 AEPRHLLVNGATGTGKSVLL-RELAYTGLLR----------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGGCEEEEECTTSSHHHHH-HHHHHHHHHT----------TCEEEEEEETTHHHH
T ss_pred cCcceEEEECCCCCCHHHHH-HHHHHHHHHC----------CCcEEEEeCCCchhH
Confidence 45679999999999999863 4455544432 456888889999864
No 175
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=93.31 E-value=0.16 Score=38.19 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=21.3
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 220 GPYGLIICPSRELARQTHDIIQYY 243 (252)
Q Consensus 220 ~~~~LIf~~tr~~a~~i~~~l~~l 243 (252)
+.++||||++++.++.+++.|++.
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~ 77 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK 77 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc
Confidence 347999999999999999999865
No 176
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=91.97 E-value=0.2 Score=36.99 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=16.2
Q ss_pred cCCCcEEEEcCCCchHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a 23 (252)
-.|+.+++.+|+|+|||..
T Consensus 36 ~~g~~~~l~G~~G~GKTtL 54 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHL 54 (180)
T ss_dssp GGCCEEEECCSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3588999999999999943
No 177
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=91.61 E-value=0.67 Score=41.79 Aligned_cols=76 Identities=22% Similarity=0.178 Sum_probs=50.2
Q ss_pred CChHHHHhhhhhhh---------cCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHH
Q psy7786 166 KPTPIQVQGIPAAL---------SGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT 236 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~---------~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i 236 (252)
.+.+.|...+..+. .+...++..++|.|||...+..+.. +..... .......++||+||+ .++.|.
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~-l~~~~~---~~~p~~~~~LiV~P~-sll~qW 129 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWT-LLKQSP---DCKPEIDKVIVVSPS-SLVRNW 129 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHH-HHHCCT---TSSCSCSCEEEEECH-HHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHH-HHHhCc---cccCCCCcEEEEecH-HHHHHH
Confidence 46677777776542 4567889999999999875444433 332211 111123469999997 778888
Q ss_pred HHHHHHHHhh
Q psy7786 237 HDIIQYYCAA 246 (252)
Q Consensus 237 ~~~l~~l~~~ 246 (252)
.++++++...
T Consensus 130 ~~E~~~~~~~ 139 (644)
T 1z3i_X 130 YNEVGKWLGG 139 (644)
T ss_dssp HHHHHHHHGG
T ss_pred HHHHHHHcCC
Confidence 8888888653
No 178
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.59 E-value=0.2 Score=38.74 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=16.0
Q ss_pred ccCCCcEEEEcCCCchHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~ 22 (252)
+..|.-+++.+++|+|||.
T Consensus 20 l~~G~~~~i~G~~GsGKTt 38 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTI 38 (247)
T ss_dssp EETTCEEEEEECTTSSHHH
T ss_pred CCCCcEEEEECCCCCCHHH
Confidence 3467788999999999994
No 179
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.21 E-value=0.12 Score=36.89 Aligned_cols=19 Identities=11% Similarity=0.097 Sum_probs=16.4
Q ss_pred cCCCcEEEEcCCCchHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a 23 (252)
..+.++++.+++|||||..
T Consensus 22 ~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp TCCSCEEEESSTTSSHHHH
T ss_pred CCCCCEEEECCCCCCHHHH
Confidence 4678999999999999954
No 180
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=91.09 E-value=0.47 Score=42.93 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=36.4
Q ss_pred cEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 70 (252)
Q Consensus 9 d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~ 70 (252)
...+.+-||||||++..- ++... . . .+|||+|+.++|.|.++.++.|.
T Consensus 34 ~~~l~g~~gs~k~~~~a~-~~~~~---~---------~-~~lvv~~~~~~A~~l~~el~~~~ 81 (661)
T 2d7d_A 34 HQTLLGATGTGKTFTVSN-LIKEV---N---------K-PTLVIAHNKTLAGQLYSEFKEFF 81 (661)
T ss_dssp EEEEEECTTSCHHHHHHH-HHHHH---C---------C-CEEEECSSHHHHHHHHHHHHHHC
T ss_pred cEEEECcCCcHHHHHHHH-HHHHh---C---------C-CEEEEECCHHHHHHHHHHHHHHc
Confidence 467889999999966532 22222 1 1 38999999999999999999883
No 181
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.70 E-value=0.11 Score=37.05 Aligned_cols=18 Identities=11% Similarity=0.047 Sum_probs=15.7
Q ss_pred cCCCcEEEEcCCCchHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~ 22 (252)
..+.++++.+++|||||.
T Consensus 25 ~~~~~vll~G~~GtGKt~ 42 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFET 42 (143)
T ss_dssp TCSSCEEEEEETTCCHHH
T ss_pred CCCCcEEEECCCCccHHH
Confidence 457789999999999994
No 182
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=90.49 E-value=0.85 Score=40.88 Aligned_cols=70 Identities=19% Similarity=0.128 Sum_probs=49.7
Q ss_pred CChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 166 KPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
..++-|..++.. .+..+++.+..|+|||...+.-+...+.... ....+.|+++.|+..|.++.+.+.++.
T Consensus 9 ~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-------~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 9 SLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-------CSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-------CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-------CChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 567778877752 3556899999999999876554444332211 112469999999999999999988764
No 183
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=90.30 E-value=1.2 Score=41.32 Aligned_cols=68 Identities=15% Similarity=0.092 Sum_probs=50.3
Q ss_pred CChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 166 KPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l 243 (252)
....-|..++...+.+.-.++.+++|+|||.... ..+..+.... +.++++.++|..-++++.+.+.+.
T Consensus 360 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~-~~i~~l~~~~---------~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLSKIH---------KDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHH-HHHHHHHHHH---------CCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH-HHHHHHHhCC---------CCeEEEEcCcHHHHHHHHHHHHhh
Confidence 4567788888777777778999999999987532 2333333221 456999999999999999988764
No 184
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.15 E-value=0.37 Score=37.27 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=17.5
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPIL 29 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~ 29 (252)
.|.=+++.+++|+||| +|++-++
T Consensus 29 ~G~l~~i~G~pG~GKT-~l~l~~~ 51 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKT-TFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHH-HHHHHHH
T ss_pred CCeEEEEEeCCCCCHH-HHHHHHH
Confidence 4667899999999999 4554433
No 185
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=89.97 E-value=0.88 Score=40.58 Aligned_cols=59 Identities=17% Similarity=0.095 Sum_probs=45.1
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCC
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALP 74 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~ 74 (252)
.+-+++..+-|+|||.....-++-.+... .+..+++++||++.|..+.+.++.+.+..+
T Consensus 178 ~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~---------~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 178 KRMTVCNLSRQLGKTTVVAIFLAHFVCFN---------KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CSEEEEEECSSSCHHHHHHHHHHHHHHTS---------SSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred ccEEEEEEcCccChHHHHHHHHHHHHHhC---------CCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 45688899999999987665444444332 245799999999999999998888877654
No 186
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=89.96 E-value=0.76 Score=33.67 Aligned_cols=24 Identities=8% Similarity=-0.119 Sum_probs=21.3
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 220 GPYGLIICPSRELARQTHDIIQYY 243 (252)
Q Consensus 220 ~~~~LIf~~tr~~a~~i~~~l~~l 243 (252)
..++||||++++.++.+++.|++.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~ 54 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ 54 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc
Confidence 457999999999999999999764
No 187
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=89.64 E-value=0.7 Score=33.46 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.3
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 220 GPYGLIICPSRELARQTHDIIQYY 243 (252)
Q Consensus 220 ~~~~LIf~~tr~~a~~i~~~l~~l 243 (252)
..++||||+|++.++.+++.|++.
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~ 58 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL 58 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc
Confidence 457999999999999999999765
No 188
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=89.53 E-value=1.1 Score=40.23 Aligned_cols=68 Identities=21% Similarity=0.132 Sum_probs=49.9
Q ss_pred CChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 166 KPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l 243 (252)
....-|..++...+.+.-.++.+++|+|||.... ..+..+... .+.++++.++|..-++++.+.+.+.
T Consensus 180 ~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~-~~i~~l~~~---------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ---------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHH-HHHHHHHTS---------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHH-HHHHHHHHc---------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 4567888888777777778899999999987532 233333221 2457999999999999999887653
No 189
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=89.50 E-value=1.8 Score=36.41 Aligned_cols=74 Identities=16% Similarity=0.054 Sum_probs=53.9
Q ss_pred CChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHh
Q psy7786 166 KPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCA 245 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~ 245 (252)
.+.+.|...+......+..++....+.|||.....-.+..+.. ..+..++++.+|++.|..+.+.++.+.+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~---------~~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF---------NKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS---------SSSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh---------CCCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 4577777766544344567777788999998766555544332 1256799999999999999999998887
Q ss_pred hCC
Q psy7786 246 ALP 248 (252)
Q Consensus 246 ~~~ 248 (252)
..+
T Consensus 234 ~~P 236 (385)
T 2o0j_A 234 LLP 236 (385)
T ss_dssp HSC
T ss_pred hCh
Confidence 665
No 190
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=89.25 E-value=1.3 Score=37.27 Aligned_cols=58 Identities=17% Similarity=0.096 Sum_probs=44.6
Q ss_pred CcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHHhCC
Q psy7786 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALP 74 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~~~~~ 74 (252)
|-+++..+-+.|||.....-++-.+... .+..+++++||++.|..+.+.++.+.+..+
T Consensus 179 R~~vi~~sRq~GKT~l~a~~~l~~a~~~---------~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 179 RMTVCNLSRQLGKTTVVAIFLAHFVCFN---------KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp SEEEEEECSSSCHHHHHHHHHHHHHHSS---------SSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred cEEEEEEcCcCChhHHHHHHHHHHHHhC---------CCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 4578888999999987666555433321 256799999999999999999998887765
No 191
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=88.75 E-value=1.4 Score=39.74 Aligned_cols=66 Identities=24% Similarity=0.202 Sum_probs=46.9
Q ss_pred ChHHHHhhhhhhhcCC-cEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 167 PTPIQVQGIPAALSGR-DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243 (252)
Q Consensus 167 p~~iQ~~~~p~~~~~~-~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l 243 (252)
..+-|..++...+..+ -.++.+++|+|||.... ..+..+..+ +.++|+.++|..-++.+.+.|...
T Consensus 190 LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~-~~I~~l~~~----------~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVV-EIILQAVKQ----------GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp CCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHH-HHHHHHHHT----------TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHH-HHHHHHHhC----------CCeEEEEcCchHHHHHHHHHHHhc
Confidence 3567787787777655 46778889999987633 333333332 457999999999999998887643
No 192
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.74 E-value=1.2 Score=36.16 Aligned_cols=39 Identities=18% Similarity=0.119 Sum_probs=26.1
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEc
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIIC 53 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ 53 (252)
+..|.=+++.+++|+||| +|++-+...+... +-.+++++
T Consensus 65 l~~G~l~li~G~pG~GKT-tl~l~ia~~~a~~----------g~~vl~~s 103 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKT-AFALKQAKNMSDN----------DDVVNLHS 103 (315)
T ss_dssp BCTTCEEEEECCTTSSHH-HHHHHHHHHHHTT----------TCEEEEEE
T ss_pred CCCCcEEEEEeCCCCCHH-HHHHHHHHHHHHc----------CCeEEEEE
Confidence 345667899999999999 5655555443321 23577776
No 193
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=88.55 E-value=0.68 Score=34.63 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchHHHH
Q psy7786 8 RDIIGIAFTGSGKTLV 23 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a 23 (252)
+.+++.+++|+|||..
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 7899999999999953
No 194
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=88.16 E-value=1.4 Score=42.96 Aligned_cols=70 Identities=27% Similarity=0.226 Sum_probs=51.2
Q ss_pred CChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 166 KPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 242 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~ 242 (252)
..++-|..++... +.++++.+..|||||...+--++..+..... .....+.++++.|+.-|..+.+.+.+
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~-----~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN-----PIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS-----CCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC-----CCCccceEEEeccHHHHHHHHHHHHH
Confidence 3567777766543 7799999999999998876666655543210 01234799999999999999988875
No 195
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=88.08 E-value=0.31 Score=35.84 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=17.3
Q ss_pred cccCCCcEEEEcCCCchHHH
Q psy7786 3 TYRNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~ 22 (252)
.+..++.+++.+++|||||.
T Consensus 7 ~~~~~~~i~i~G~~GsGKst 26 (180)
T 3iij_A 7 EFMLLPNILLTGTPGVGKTT 26 (180)
T ss_dssp TTCCCCCEEEECSTTSSHHH
T ss_pred ccccCCeEEEEeCCCCCHHH
Confidence 45677889999999999995
No 196
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=88.05 E-value=0.21 Score=40.86 Aligned_cols=27 Identities=7% Similarity=-0.096 Sum_probs=19.0
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCL 33 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~ 33 (252)
.+.++++.+|+|||||... --++..+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v-~~v~~~L~ 70 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLV-NDVMDELI 70 (318)
T ss_dssp CCCEEEEECCCSHHHHHHH-HHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 4668999999999999543 33344443
No 197
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=88.00 E-value=1.1 Score=32.44 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=21.3
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 220 GPYGLIICPSRELARQTHDIIQYY 243 (252)
Q Consensus 220 ~~~~LIf~~tr~~a~~i~~~l~~l 243 (252)
..++||||+|++.++.+++.|++.
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~ 53 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND 53 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc
Confidence 457999999999999999999764
No 198
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=87.93 E-value=0.74 Score=33.74 Aligned_cols=24 Identities=17% Similarity=0.095 Sum_probs=21.4
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 220 GPYGLIICPSRELARQTHDIIQYY 243 (252)
Q Consensus 220 ~~~~LIf~~tr~~a~~i~~~l~~l 243 (252)
..++||||++++.|+.+++.|++.
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~ 57 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD 57 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc
Confidence 468999999999999999999764
No 199
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=87.82 E-value=0.22 Score=43.68 Aligned_cols=20 Identities=30% Similarity=0.237 Sum_probs=17.0
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|..+++.+|||||||..
T Consensus 257 v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHH
T ss_pred HhCCCEEEEECCCCCCHHHH
Confidence 35788999999999999954
No 200
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=87.47 E-value=0.8 Score=34.83 Aligned_cols=19 Identities=26% Similarity=0.176 Sum_probs=16.0
Q ss_pred ccCCCcEEEEcCCCchHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~ 22 (252)
+..|.-+++.+++|+|||.
T Consensus 20 i~~G~~~~i~G~~GsGKTt 38 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTI 38 (235)
T ss_dssp EETTCEEEEECSTTSSHHH
T ss_pred CcCCCEEEEEcCCCCCHHH
Confidence 4467788999999999993
No 201
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=87.31 E-value=1.1 Score=33.25 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=21.4
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 220 GPYGLIICPSRELARQTHDIIQYY 243 (252)
Q Consensus 220 ~~~~LIf~~tr~~a~~i~~~l~~l 243 (252)
+.++||||++++.|+.+++.|++.
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~ 69 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHE 69 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCHHHHHHHHHHHHHc
Confidence 567999999999999999999764
No 202
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=87.26 E-value=0.28 Score=35.93 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCchHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a 23 (252)
++.+++.+++|+|||..
T Consensus 43 ~~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAI 59 (195)
T ss_dssp SCEEEEECCTTSCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 46799999999999943
No 203
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=87.13 E-value=1.7 Score=39.28 Aligned_cols=69 Identities=19% Similarity=0.062 Sum_probs=48.3
Q ss_pred ChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 167 PTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 167 p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
.++-|..++.. .+..+++.+..|+|||....--+...+.... ....+.|+++-|+..|.++.+.+.+..
T Consensus 3 L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-------~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 3 LNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-------YQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC-------CCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC-------CCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 45666666643 2567889999999999876555544443311 012469999999999999999887653
No 204
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=87.06 E-value=1.4 Score=33.41 Aligned_cols=25 Identities=0% Similarity=-0.019 Sum_probs=21.9
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 220 GPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 220 ~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
+.++||||+|++.++.+++.|++.+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~~ 55 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRLG 55 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcC
Confidence 4579999999999999999998754
No 205
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=86.84 E-value=2.7 Score=37.42 Aligned_cols=73 Identities=16% Similarity=0.049 Sum_probs=54.1
Q ss_pred ChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHHhh
Q psy7786 167 PTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAA 246 (252)
Q Consensus 167 p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~~~ 246 (252)
+.+.|...+......+..++....+.|||.....-.+..+... .+.+++++.+|++.|..+.+.++.+.+.
T Consensus 164 l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~---------~~~~i~~va~t~~qA~~~~~~i~~~i~~ 234 (592)
T 3cpe_A 164 LRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN---------KDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (592)
T ss_dssp CCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS---------SSCEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC---------CCCeEEEEECCHHHHHHHHHHHHHHHHh
Confidence 5677877665544456788888889999987665444444321 2457999999999999999999988877
Q ss_pred CC
Q psy7786 247 LP 248 (252)
Q Consensus 247 ~~ 248 (252)
.+
T Consensus 235 ~p 236 (592)
T 3cpe_A 235 LP 236 (592)
T ss_dssp SC
T ss_pred Ch
Confidence 65
No 206
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=86.83 E-value=0.32 Score=38.59 Aligned_cols=20 Identities=35% Similarity=0.298 Sum_probs=16.4
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.-+.+.+|||||||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 34677789999999999954
No 207
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=86.82 E-value=2 Score=39.78 Aligned_cols=68 Identities=21% Similarity=0.126 Sum_probs=49.3
Q ss_pred CChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHH
Q psy7786 166 KPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l 243 (252)
....-|..++...+.+.-.++.+++|+|||... ...+..+... .+.++++.+||..-|+++.+.+.+.
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~~---------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ---------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHTT---------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHHc---------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 346678888877777777889999999998753 2333333321 2457999999999999999887653
No 208
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=86.50 E-value=1.7 Score=35.86 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=26.2
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEc
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIIC 53 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ 53 (252)
..|.=+++.|++|+||| +|++-+...+... +..++|++
T Consensus 44 ~~G~LiiIaG~pG~GKT-t~al~ia~~~a~~----------g~~Vl~fS 81 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKT-SLMMNMVLSALND----------DRGVAVFS 81 (338)
T ss_dssp CTTCEEEEEECTTSCHH-HHHHHHHHHHHHT----------TCEEEEEE
T ss_pred CCCcEEEEEeCCCCCHH-HHHHHHHHHHHHc----------CCeEEEEe
Confidence 45666899999999999 5666655554432 34577776
No 209
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=86.15 E-value=0.4 Score=35.45 Aligned_cols=19 Identities=11% Similarity=0.335 Sum_probs=16.0
Q ss_pred cCCCcEEEEcCCCchHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a 23 (252)
..|+=+++.+|+|||||..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4678899999999999953
No 210
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=86.15 E-value=1.5 Score=39.67 Aligned_cols=66 Identities=24% Similarity=0.336 Sum_probs=46.0
Q ss_pred CChHHHHhhhhhhh----cC-CcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q psy7786 166 KPTPIQVQGIPAAL----SG-RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 240 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~----~~-~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l 240 (252)
.|+..|...+.... .| +...+...+|+|||+.... ++... +..+||++|+..+|.|+++.|
T Consensus 8 ~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~-~~~~~-------------~~~~lvv~~~~~~A~ql~~el 73 (664)
T 1c4o_A 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAK-VIEAL-------------GRPALVLAPNKILAAQLAAEF 73 (664)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH-------------TCCEEEEESSHHHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHH-HHHHh-------------CCCEEEEecCHHHHHHHHHHH
Confidence 67777776665433 23 2466788999999776432 22211 123899999999999999999
Q ss_pred HHHHh
Q psy7786 241 QYYCA 245 (252)
Q Consensus 241 ~~l~~ 245 (252)
+.+..
T Consensus 74 ~~~~~ 78 (664)
T 1c4o_A 74 RELFP 78 (664)
T ss_dssp HHHCT
T ss_pred HHHCC
Confidence 98853
No 211
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.95 E-value=0.28 Score=35.92 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCchHHH
Q psy7786 7 SRDIIGIAFTGSGKTL 22 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~ 22 (252)
++.+++.+++|+|||.
T Consensus 43 ~~~vll~G~~G~GKT~ 58 (187)
T 2p65_A 43 KNNPILLGDPGVGKTA 58 (187)
T ss_dssp SCEEEEESCGGGCHHH
T ss_pred CCceEEECCCCCCHHH
Confidence 5689999999999994
No 212
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=85.92 E-value=1.1 Score=38.41 Aligned_cols=39 Identities=18% Similarity=0.119 Sum_probs=27.2
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEc
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIIC 53 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ 53 (252)
+..|.=+++.|++|+||| +|++-+...+... +-.+++++
T Consensus 194 l~~G~liiIaG~pG~GKT-tlal~ia~~~a~~----------g~~vl~fS 232 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKT-AFALKQAKNMSDN----------DDVVNLHS 232 (444)
T ss_dssp BCSSCEEEEEECSSSSHH-HHHHHHHHHHHHT----------TCEEEEEC
T ss_pred CCCCcEEEEEeCCCCChH-HHHHHHHHHHHHc----------CCEEEEEE
Confidence 345667899999999999 6666666555432 33577776
No 213
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=85.92 E-value=0.36 Score=36.96 Aligned_cols=17 Identities=24% Similarity=0.108 Sum_probs=15.2
Q ss_pred CCCcEEEEcCCCchHHH
Q psy7786 6 NSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~ 22 (252)
.++.+++.+|+|+|||.
T Consensus 51 ~~~~~ll~G~~G~GKT~ 67 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTH 67 (242)
T ss_dssp SCSEEEEECSTTSSHHH
T ss_pred CCCeEEEECCCCCCHHH
Confidence 47789999999999994
No 214
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=85.86 E-value=0.96 Score=38.85 Aligned_cols=30 Identities=33% Similarity=0.306 Sum_probs=22.2
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLE 34 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~ 34 (252)
+..|.=+++.+++|+||| +|++-+...+..
T Consensus 200 l~~G~liiI~G~pG~GKT-tl~l~ia~~~~~ 229 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKT-AFALNIAQNVAT 229 (454)
T ss_dssp BCTTCEEEEECCTTSCHH-HHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHH-HHHHHHHHHHHH
Confidence 346777899999999999 566666555543
No 215
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=85.80 E-value=2.5 Score=38.57 Aligned_cols=70 Identities=21% Similarity=0.154 Sum_probs=49.8
Q ss_pred CChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 166 KPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
..++-|..++.. .+..+++.+..|+|||.....-+...+.... ....+.|+++-|+..|.++.+.+.++.
T Consensus 11 ~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-------~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-------VAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC-------CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-------CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 567778876654 3457899999999999876555544433211 112469999999999999999887764
No 216
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=85.75 E-value=0.95 Score=38.76 Aligned_cols=30 Identities=27% Similarity=0.084 Sum_probs=22.0
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLE 34 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~ 34 (252)
+..|.=+++.|++|+||| +|++-+...+..
T Consensus 197 l~~G~l~ii~G~pg~GKT-~lal~ia~~~a~ 226 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKT-AFALTIAQNAAL 226 (444)
T ss_dssp CCTTCEEEEEECTTSCHH-HHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHH-HHHHHHHHHHHH
Confidence 345667899999999999 666666655543
No 217
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=85.54 E-value=0.38 Score=40.06 Aligned_cols=20 Identities=40% Similarity=0.386 Sum_probs=17.0
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|..+++.++||||||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 34788999999999999953
No 218
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=85.26 E-value=0.39 Score=39.83 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=18.1
Q ss_pred CcccCCCc--EEEEcCCCchHHHHh
Q psy7786 2 VTYRNSRD--IIGIAFTGSGKTLVF 24 (252)
Q Consensus 2 ~~~~~g~d--~~~~a~tgsGKT~a~ 24 (252)
..+++|.| +++-++||||||.+.
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 78 QSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp GGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHhcCCceeEEEEECCCCCCCcEec
Confidence 34678888 566789999999775
No 219
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=85.20 E-value=0.46 Score=37.37 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=15.7
Q ss_pred cCCCcEEEEcCCCchHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~ 22 (252)
..+..+++.+++|||||.
T Consensus 27 ~~~~~vll~G~~GtGKt~ 44 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKEL 44 (265)
T ss_dssp TSCSCEEEECCTTSCHHH
T ss_pred CCCCCEEEECCCCCcHHH
Confidence 456789999999999994
No 220
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=85.16 E-value=3 Score=36.97 Aligned_cols=64 Identities=16% Similarity=0.086 Sum_probs=46.1
Q ss_pred CChHHHHhhhhhhhcCCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q psy7786 166 KPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 240 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~~~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l 240 (252)
..++-|..++...+.+..+++..++|+|||.. +..+...+.. .+.++++.+||..-|..+.+.+
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~--i~~l~~~l~~---------~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT--TKAVADLAES---------LGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH--HHHHHHHHHH---------TTCCEEEEESSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH--HHHHHHHHHh---------cCCeEEEecCcHHHHHHhHhhh
Confidence 35677888888778888899999999999864 2222222222 2456899999999998887643
No 221
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=85.12 E-value=0.48 Score=38.09 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=15.1
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
.+.++++.+|+|+|||..
T Consensus 66 ~~~~vll~G~~GtGKT~l 83 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTV 83 (309)
T ss_dssp CCCEEEEEECTTSSHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 455799999999999953
No 222
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=85.08 E-value=0.86 Score=38.23 Aligned_cols=42 Identities=26% Similarity=0.374 Sum_probs=28.3
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSREL 58 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreL 58 (252)
.+.++++.++||||||...-. ++..+.. .+.+++++=|.+|.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~----------~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYM----------QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHT----------TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHH----------CCCEEEEEeCCcCH
Confidence 577999999999999954332 3322222 24567888888763
No 223
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=84.81 E-value=2.7 Score=35.99 Aligned_cols=71 Identities=10% Similarity=0.042 Sum_probs=46.3
Q ss_pred HHCCCCCChHHHHhhhhhhhc-----CCcEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHH
Q psy7786 160 EAKGIKKPTPIQVQGIPAALS-----GRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELAR 234 (252)
Q Consensus 160 ~~~~~~~p~~iQ~~~~p~~~~-----~~~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~ 234 (252)
.-..+..+++-|..++...+. ...+++.++.|+|||... ...+..+.... ..++++.++|..-|.
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~---------~~~il~~a~T~~Aa~ 88 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG---------ETGIILAAPTHAAKK 88 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT---------CCCEEEEESSHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC---------CceEEEecCcHHHHH
Confidence 334566777788877765432 238999999999999542 33333333321 135899999999888
Q ss_pred HHHHHH
Q psy7786 235 QTHDII 240 (252)
Q Consensus 235 ~i~~~l 240 (252)
.+.+.+
T Consensus 89 ~l~~~~ 94 (459)
T 3upu_A 89 ILSKLS 94 (459)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 877654
No 224
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=84.76 E-value=1.2 Score=35.56 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=18.7
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILM 30 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~ 30 (252)
+..|.=+++.+++|+|||. ++.-+..
T Consensus 32 l~~G~~~~i~G~~G~GKTT-l~~~ia~ 57 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKST-FVRQQAL 57 (296)
T ss_dssp BCTTCEEEEEESTTSSHHH-HHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHH-HHHHHHH
Confidence 4567778999999999994 4333333
No 225
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=84.74 E-value=0.44 Score=36.21 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=14.2
Q ss_pred CCCcEEEEcCCCchHH
Q psy7786 6 NSRDIIGIAFTGSGKT 21 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT 21 (252)
.|+-+++.++||+|||
T Consensus 33 ~g~~ilI~GpsGsGKS 48 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKS 48 (205)
T ss_dssp TTEEEEEECCCTTTTH
T ss_pred CCEEEEEECCCCCCHH
Confidence 5667899999999998
No 226
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=84.63 E-value=0.49 Score=35.64 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=14.8
Q ss_pred CCCcEEEEcCCCchHHHHh
Q psy7786 6 NSRDIIGIAFTGSGKTLVF 24 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~ 24 (252)
.|+-+.+.+|+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5788999999999999543
No 227
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=84.57 E-value=0.41 Score=35.87 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=13.4
Q ss_pred CcEEEEcCCCchHHH
Q psy7786 8 RDIIGIAFTGSGKTL 22 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~ 22 (252)
|-+++.+|+|+|||.
T Consensus 2 RpIVi~GPSG~GK~T 16 (186)
T 1ex7_A 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEECCTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 568999999999994
No 228
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=84.45 E-value=1.5 Score=38.38 Aligned_cols=19 Identities=21% Similarity=0.275 Sum_probs=16.1
Q ss_pred cCCCcEEEEcCCCchHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a 23 (252)
..+-++++.+.||||||..
T Consensus 165 ~~~pHlLIaG~TGSGKSt~ 183 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVG 183 (512)
T ss_dssp GGSCSEEEECCTTSSHHHH
T ss_pred ccCceEEEECCCCCCHHHH
Confidence 3567999999999999954
No 229
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=84.34 E-value=0.45 Score=35.72 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=15.7
Q ss_pred cCCCcEEEEcCCCchHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a 23 (252)
..|+.+++.+++|||||..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp -CCCEEEEECCTTSCHHHH
T ss_pred CCCCEEEEEcCCCCCHHHH
Confidence 4678899999999999943
No 230
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=84.26 E-value=0.54 Score=35.46 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=16.8
Q ss_pred ccCCCcEEEEcCCCchHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~ 22 (252)
+..|+-+++.+++|||||.
T Consensus 9 ~~~~~~i~l~G~sGsGKsT 27 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGT 27 (204)
T ss_dssp CCCCCCEEEECCTTSCHHH
T ss_pred cccCCEEEEECCCCCCHHH
Confidence 5678889999999999994
No 231
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=84.20 E-value=0.42 Score=39.32 Aligned_cols=18 Identities=39% Similarity=0.412 Sum_probs=16.2
Q ss_pred cCCCcEEEEcCCCchHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~ 22 (252)
..|+.+.+.++||||||.
T Consensus 169 ~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHTCCEEEEESTTSCHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 468899999999999995
No 232
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=84.09 E-value=0.49 Score=35.84 Aligned_cols=19 Identities=16% Similarity=0.513 Sum_probs=16.5
Q ss_pred ccCCCcEEEEcCCCchHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~ 22 (252)
...|+=+++.+|+|+|||.
T Consensus 16 ~~~g~~ivl~GPSGaGKsT 34 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSH 34 (197)
T ss_dssp CCSCCEEEEECCTTSSHHH
T ss_pred CCCCCEEEEECcCCCCHHH
Confidence 3578889999999999995
No 233
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=84.02 E-value=0.51 Score=38.11 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=16.0
Q ss_pred cCCCcEEEEcCCCchHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a 23 (252)
..++.+++.+|+|||||..
T Consensus 47 ~~~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CCCSEEEEECSSSSSHHHH
T ss_pred CCCceEEEECCCCcCHHHH
Confidence 4567899999999999953
No 234
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=83.84 E-value=0.44 Score=39.65 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=17.0
Q ss_pred cccCCCc--EEEEcCCCchHHHHh
Q psy7786 3 TYRNSRD--IIGIAFTGSGKTLVF 24 (252)
Q Consensus 3 ~~~~g~d--~~~~a~tgsGKT~a~ 24 (252)
.+++|.| +++-++||||||.+.
T Consensus 99 ~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 99 QALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHhCCCCEEEEEeCCCCCCccEEe
Confidence 3577887 566789999999764
No 235
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=83.83 E-value=3.1 Score=32.86 Aligned_cols=19 Identities=16% Similarity=0.111 Sum_probs=16.0
Q ss_pred ccCCCcEEEEcCCCchHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~ 22 (252)
+..|.=+++.+++|||||.
T Consensus 27 l~~G~i~~i~G~~GsGKTt 45 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSM 45 (279)
T ss_dssp EETTSEEEEEESTTSSHHH
T ss_pred ccCCCEEEEEcCCCCCHHH
Confidence 3467788999999999994
No 236
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=83.81 E-value=0.53 Score=37.40 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=15.9
Q ss_pred cCCCcEEEEcCCCchHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a 23 (252)
..++.+++.+|+|+|||..
T Consensus 49 ~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCCSEEEEESSSSSSHHHH
T ss_pred CCCCeEEEECCCCCcHHHH
Confidence 4567899999999999943
No 237
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=83.72 E-value=0.41 Score=39.72 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=17.5
Q ss_pred cccCCCcE--EEEcCCCchHHHHh
Q psy7786 3 TYRNSRDI--IGIAFTGSGKTLVF 24 (252)
Q Consensus 3 ~~~~g~d~--~~~a~tgsGKT~a~ 24 (252)
.+++|.|. ++-++||||||.+.
T Consensus 80 ~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 80 SSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp GGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHCCcceeEEEeCCCCCCCceEe
Confidence 46788884 56789999999776
No 238
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=83.55 E-value=1.9 Score=41.76 Aligned_cols=63 Identities=16% Similarity=0.060 Sum_probs=40.2
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCC-CCCCCCcEEEEEcCcHHHHHHHHHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLP-FLPGEGPYGLIICPSRELARQTHDIIQY 68 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~-~~~~~~~~~lil~ptreLa~q~~~~~~~ 68 (252)
++|.. +|.|..|||||.+-+-=++..+........ .....--+.|+|+=|+.=|....+++..
T Consensus 15 l~g~~-lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 15 LQGER-LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp CSSCE-EEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CCCCE-EEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 34555 899999999998777666666653210000 0001123699999999888887766654
No 239
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=83.47 E-value=3.1 Score=36.07 Aligned_cols=52 Identities=19% Similarity=0.223 Sum_probs=38.1
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 70 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreLa~q~~~~~~~l~ 70 (252)
..|....+.+-||||||++..- ++ ... +-..|||+|+...|.|.++.++.|.
T Consensus 12 ~~~~~~~l~g~~gs~ka~~~a~-l~----~~~---------~~p~lvv~~~~~~A~~l~~~l~~~~ 63 (483)
T 3hjh_A 12 KAGEQRLLGELTGAACATLVAE-IA----ERH---------AGPVVLIAPDMQNALRLHDEISQFT 63 (483)
T ss_dssp STTCEEEEECCCTTHHHHHHHH-HH----HHS---------SSCEEEEESSHHHHHHHHHHHHHTC
T ss_pred CCCCeEEEeCCCchHHHHHHHH-HH----HHh---------CCCEEEEeCCHHHHHHHHHHHHhhC
Confidence 4566788999999999965321 11 211 1138999999999999999998873
No 240
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=83.37 E-value=0.59 Score=36.49 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=15.0
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
..+.+++.+|+|+|||..
T Consensus 38 ~~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCCEEEEESCTTSSHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 456799999999999953
No 241
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=83.33 E-value=0.55 Score=35.18 Aligned_cols=20 Identities=25% Similarity=0.160 Sum_probs=16.3
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|+-+.+.+++|||||..
T Consensus 3 i~~g~~i~l~G~~GsGKSTl 22 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTV 22 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHH
T ss_pred CCCCCEEEEECCCCCCHHHH
Confidence 45688899999999999953
No 242
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=83.33 E-value=1.4 Score=36.80 Aligned_cols=28 Identities=21% Similarity=0.118 Sum_probs=21.6
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCL 33 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~~ 33 (252)
-.|+-+++.+++|+||| +|++.+...+.
T Consensus 72 ~~G~li~I~G~pGsGKT-tlal~la~~~~ 99 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKT-TLALAIVAQAQ 99 (366)
T ss_dssp ETTSEEEEEESTTSSHH-HHHHHHHHHHH
T ss_pred cCCcEEEEEcCCCCChH-HHHHHHHHHHH
Confidence 45778999999999999 66666665554
No 243
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=83.18 E-value=0.74 Score=35.14 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=17.6
Q ss_pred CcEEEEcCCCchHHHHhHHHHHHHH
Q psy7786 8 RDIIGIAFTGSGKTLVFVLPILMFC 32 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a~~lp~~~~~ 32 (252)
+.+++.+|.|||||. |...+.+.+
T Consensus 59 n~ili~GPPGtGKTt-~a~ala~~l 82 (212)
T 1tue_A 59 NCLVFCGPANTGKSY-FGMSFIHFI 82 (212)
T ss_dssp SEEEEESCGGGCHHH-HHHHHHHHH
T ss_pred cEEEEECCCCCCHHH-HHHHHHHHh
Confidence 359999999999994 335555554
No 244
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=83.12 E-value=0.56 Score=39.23 Aligned_cols=19 Identities=37% Similarity=0.352 Sum_probs=16.0
Q ss_pred cCCCcEEEEcCCCchHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a 23 (252)
..|.-+++.+|||||||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 4577899999999999954
No 245
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=82.99 E-value=0.53 Score=38.64 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=17.3
Q ss_pred cccCCCc--EEEEcCCCchHHHHh
Q psy7786 3 TYRNSRD--IIGIAFTGSGKTLVF 24 (252)
Q Consensus 3 ~~~~g~d--~~~~a~tgsGKT~a~ 24 (252)
.+++|.| +++-++||||||.+.
T Consensus 72 ~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 72 DVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCeEEEEEECCCCCCCceEe
Confidence 3567887 667889999999764
No 246
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=82.97 E-value=0.55 Score=38.17 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCchHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a 23 (252)
++++++.+|+|+|||..
T Consensus 152 ~~~lll~G~~GtGKT~L 168 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYL 168 (308)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 68999999999999943
No 247
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=82.88 E-value=0.63 Score=37.26 Aligned_cols=18 Identities=39% Similarity=0.565 Sum_probs=15.3
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
.++.+++.+|+|+|||..
T Consensus 49 ~~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 367899999999999943
No 248
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=82.87 E-value=2 Score=31.87 Aligned_cols=40 Identities=13% Similarity=-0.007 Sum_probs=25.3
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSR 56 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptr 56 (252)
.|+=.++.++.|+|||.+.+ -++.+... .+-+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll-~~~~~~~~----------~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELL-SFVEIYKL----------GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHH-HHHHHHHH----------TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHH-HHHHHHHH----------CCCeEEEEeecc
Confidence 35667889999999996543 33333322 134688888774
No 249
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=82.69 E-value=0.62 Score=38.74 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=17.0
Q ss_pred cccCCCc--EEEEcCCCchHHHHh
Q psy7786 3 TYRNSRD--IIGIAFTGSGKTLVF 24 (252)
Q Consensus 3 ~~~~g~d--~~~~a~tgsGKT~a~ 24 (252)
.+++|.| +++-++||||||.+.
T Consensus 75 ~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 75 DILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCcceEEEECCCCCCcceEe
Confidence 3567887 566789999999764
No 250
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=82.58 E-value=0.46 Score=39.19 Aligned_cols=20 Identities=20% Similarity=0.034 Sum_probs=16.0
Q ss_pred EEcCcHHHHHHHHHHHHHHH
Q psy7786 225 IICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 225 If~~tr~~a~~i~~~l~~l~ 244 (252)
+-.+||..|.+...+++++.
T Consensus 271 ik~~TR~yAKRQ~tWfr~~~ 290 (339)
T 3a8t_A 271 IKENTCHLAKRQIGKILRLK 290 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccCC
Confidence 45688999999888888764
No 251
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=82.55 E-value=1.6 Score=36.24 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=19.8
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFC 32 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~ 32 (252)
-.|+-+++.+++|+||| ++++-+...+
T Consensus 61 ~~G~ii~I~G~pGsGKT-tLal~la~~~ 87 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKT-TLTLQVIAAA 87 (356)
T ss_dssp ETTSEEEEECSTTSSHH-HHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHH-HHHHHHHHHH
Confidence 36778999999999999 4445544444
No 252
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=82.49 E-value=0.68 Score=38.39 Aligned_cols=18 Identities=50% Similarity=0.648 Sum_probs=15.7
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
.++.+++.+|+|||||..
T Consensus 50 ~~~~vll~GppGtGKT~l 67 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLL 67 (363)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 567899999999999953
No 253
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=82.47 E-value=0.56 Score=34.71 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=16.7
Q ss_pred cccCCCcEEEEcCCCchHHH
Q psy7786 3 TYRNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 3 ~~~~g~d~~~~a~tgsGKT~ 22 (252)
.+..|+-+++.+++|||||.
T Consensus 5 ~i~~g~~i~l~G~~GsGKST 24 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKST 24 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHH
T ss_pred CCCCCeEEEEECCCCCCHHH
Confidence 35678889999999999995
No 254
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=82.47 E-value=0.56 Score=38.77 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCchHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a 23 (252)
|+.+++.+|+|+|||..
T Consensus 70 ~~~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAI 86 (368)
T ss_dssp TCEEEEEESTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 56899999999999953
No 255
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=82.35 E-value=0.57 Score=37.46 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=15.4
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
.++.+++.+|+|||||..
T Consensus 53 ~~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp CCSEEEEESSSSSCHHHH
T ss_pred CCCeEEEECcCCCCHHHH
Confidence 367899999999999953
No 256
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=82.31 E-value=0.64 Score=38.63 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=17.0
Q ss_pred cccCCCc--EEEEcCCCchHHHHh
Q psy7786 3 TYRNSRD--IIGIAFTGSGKTLVF 24 (252)
Q Consensus 3 ~~~~g~d--~~~~a~tgsGKT~a~ 24 (252)
.+++|.| +++-++||||||.+.
T Consensus 100 ~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 100 SFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHhCCCceEEEEeCCCCCCceeee
Confidence 3567887 566789999999764
No 257
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=82.23 E-value=0.46 Score=38.78 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=16.0
Q ss_pred cCCCcEEEEcCCCchHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~ 22 (252)
..|+++++.+|+|+|||.
T Consensus 44 ~~~~~vll~G~pGtGKT~ 61 (331)
T 2r44_A 44 CTGGHILLEGVPGLAKTL 61 (331)
T ss_dssp HHTCCEEEESCCCHHHHH
T ss_pred HcCCeEEEECCCCCcHHH
Confidence 457899999999999994
No 258
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=82.23 E-value=0.59 Score=38.45 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=16.8
Q ss_pred ccCCCc--EEEEcCCCchHHHHh
Q psy7786 4 YRNSRD--IIGIAFTGSGKTLVF 24 (252)
Q Consensus 4 ~~~g~d--~~~~a~tgsGKT~a~ 24 (252)
+++|.| +++-++||||||.+.
T Consensus 76 ~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 76 CIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHTTCCEEEEEESSTTSSHHHHH
T ss_pred HhCCCEEEEEeECCCCCCCcEEE
Confidence 567887 567889999999765
No 259
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=82.07 E-value=0.37 Score=39.94 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=16.9
Q ss_pred cccCCCc--EEEEcCCCchHHHHh
Q psy7786 3 TYRNSRD--IIGIAFTGSGKTLVF 24 (252)
Q Consensus 3 ~~~~g~d--~~~~a~tgsGKT~a~ 24 (252)
.+++|.| +++-++||||||.+.
T Consensus 78 ~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 78 AFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHhhcCeeEEEecccCCCceEee
Confidence 3567887 466789999999764
No 260
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=82.04 E-value=0.6 Score=38.73 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=16.6
Q ss_pred ccCCCc--EEEEcCCCchHHHHh
Q psy7786 4 YRNSRD--IIGIAFTGSGKTLVF 24 (252)
Q Consensus 4 ~~~g~d--~~~~a~tgsGKT~a~ 24 (252)
+++|.| +++-++||||||.+.
T Consensus 85 ~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 85 VLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHTTCCEEEEEECSTTSSHHHHH
T ss_pred HhCCCceeEEeecCCCCCCCEEe
Confidence 567777 566789999999775
No 261
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=82.01 E-value=0.75 Score=34.46 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=13.3
Q ss_pred CcEEEEcCCCchHHH
Q psy7786 8 RDIIGIAFTGSGKTL 22 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~ 22 (252)
..+++.+++|+|||.
T Consensus 39 ~~~ll~G~~G~GKT~ 53 (226)
T 2chg_A 39 PHLLFSGPPGTGKTA 53 (226)
T ss_dssp CCEEEECSTTSSHHH
T ss_pred CeEEEECCCCCCHHH
Confidence 359999999999994
No 262
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=81.99 E-value=0.79 Score=35.04 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=15.8
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|+=+.+.+|+|+|||..
T Consensus 20 i~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp --CCCCEEEECSTTSSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 45688899999999999954
No 263
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=81.96 E-value=0.88 Score=37.55 Aligned_cols=14 Identities=43% Similarity=0.313 Sum_probs=12.2
Q ss_pred cEEEEcCCCchHHH
Q psy7786 9 DIIGIAFTGSGKTL 22 (252)
Q Consensus 9 d~~~~a~tgsGKT~ 22 (252)
-+++.+|||||||.
T Consensus 9 lI~I~GptgSGKTt 22 (340)
T 3d3q_A 9 LIVIVGPTASGKTE 22 (340)
T ss_dssp EEEEECSTTSSHHH
T ss_pred eEEEECCCcCcHHH
Confidence 47899999999993
No 264
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=81.93 E-value=0.66 Score=33.22 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=15.2
Q ss_pred CCCcEEEEcCCCchHHH
Q psy7786 6 NSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~ 22 (252)
.|+.+++.+++|+|||.
T Consensus 35 ~g~~~~l~G~~G~GKTt 51 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSH 51 (149)
T ss_dssp CCSEEEEESSSTTTTCH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57889999999999994
No 265
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=81.88 E-value=0.5 Score=39.61 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=17.1
Q ss_pred cccCCCc--EEEEcCCCchHHHHh
Q psy7786 3 TYRNSRD--IIGIAFTGSGKTLVF 24 (252)
Q Consensus 3 ~~~~g~d--~~~~a~tgsGKT~a~ 24 (252)
.+++|.| +++-++||||||.+.
T Consensus 110 ~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 110 SALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp GGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HhcCCCceEEEEeCCCCCCCceEe
Confidence 4678887 556689999999664
No 266
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=81.84 E-value=0.57 Score=34.32 Aligned_cols=22 Identities=23% Similarity=0.176 Sum_probs=17.3
Q ss_pred cCCCcEEEEcCCCchHHHHhHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVL 26 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~l 26 (252)
-.|.=+.+.+++|||||..+-.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 4566788999999999965543
No 267
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=81.84 E-value=1.7 Score=33.45 Aligned_cols=40 Identities=15% Similarity=-0.135 Sum_probs=25.0
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSR 56 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptr 56 (252)
.|.=+++.+++|+|||.+. +-.+.++.. .+-+++++.|..
T Consensus 11 ~G~i~litG~mGsGKTT~l-l~~~~r~~~----------~g~kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAEL-IRRLHRLEY----------ADVKYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHH-HHHHHHHHH----------TTCCEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHH-HHHHHHHHh----------cCCEEEEEEecc
Confidence 3555778899999999554 333433332 244578886654
No 268
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=81.80 E-value=0.62 Score=38.89 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=17.1
Q ss_pred cccCCCc--EEEEcCCCchHHHHh
Q psy7786 3 TYRNSRD--IIGIAFTGSGKTLVF 24 (252)
Q Consensus 3 ~~~~g~d--~~~~a~tgsGKT~a~ 24 (252)
.+++|.| +++-++||||||.+.
T Consensus 79 ~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 79 DVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCceEEEeecCCCCCCceEE
Confidence 3567887 566789999999774
No 269
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=81.79 E-value=2 Score=38.03 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=18.8
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCL 33 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~ 33 (252)
++-++++.+.||||||.+ +-.++..++
T Consensus 213 k~pHlLIaG~TGSGKS~~-L~tlI~sLl 239 (574)
T 2iut_A 213 KMPHLLVAGTTGSGKSVG-VNAMLLSIL 239 (574)
T ss_dssp GSCCEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred hCCeeEEECCCCCCHHHH-HHHHHHHHH
Confidence 356899999999999954 334444343
No 270
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=81.79 E-value=0.69 Score=38.90 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=17.3
Q ss_pred cccCCCc--EEEEcCCCchHHHHh
Q psy7786 3 TYRNSRD--IIGIAFTGSGKTLVF 24 (252)
Q Consensus 3 ~~~~g~d--~~~~a~tgsGKT~a~ 24 (252)
.+++|.| +++-++||||||.+.
T Consensus 93 ~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 93 HLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HhhcCceeeEeeecCCCCCCCeEe
Confidence 3578887 556789999999775
No 271
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=81.73 E-value=0.65 Score=34.17 Aligned_cols=16 Identities=38% Similarity=0.472 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCchHHH
Q psy7786 7 SRDIIGIAFTGSGKTL 22 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~ 22 (252)
++.+++.+++|||||.
T Consensus 5 ~~~i~l~G~~GsGKst 20 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTS 20 (185)
T ss_dssp CCEEEEECSTTSSHHH
T ss_pred CCEEEEECCCCCCHHH
Confidence 6789999999999994
No 272
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=81.70 E-value=0.6 Score=39.04 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=16.6
Q ss_pred cccCCCc--EEEEcCCCchHHHHh
Q psy7786 3 TYRNSRD--IIGIAFTGSGKTLVF 24 (252)
Q Consensus 3 ~~~~g~d--~~~~a~tgsGKT~a~ 24 (252)
.+++|.| +++-++||||||.+.
T Consensus 96 ~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 96 SVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHhCCCeeeEEeecCCCCCCCEeE
Confidence 3567887 456789999999764
No 273
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=81.70 E-value=0.55 Score=39.06 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=14.8
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
.|.-+++.+|||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455789999999999944
No 274
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=81.61 E-value=0.69 Score=39.15 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=17.2
Q ss_pred cccCCCcE--EEEcCCCchHHHHh
Q psy7786 3 TYRNSRDI--IGIAFTGSGKTLVF 24 (252)
Q Consensus 3 ~~~~g~d~--~~~a~tgsGKT~a~ 24 (252)
.+++|.|. ++-++||||||.+.
T Consensus 135 ~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 135 SSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhCCcceEEEEECCCCCCCceEe
Confidence 35688874 66789999999775
No 275
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=81.55 E-value=0.77 Score=33.47 Aligned_cols=17 Identities=29% Similarity=0.192 Sum_probs=14.4
Q ss_pred CCCcEEEEcCCCchHHH
Q psy7786 6 NSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~ 22 (252)
.++-+++.+++|||||.
T Consensus 2 ~~~~i~l~G~~GsGKST 18 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSG 18 (178)
T ss_dssp CCCEEEEECCTTSSHHH
T ss_pred CceEEEEECCCCCCHHH
Confidence 35678999999999994
No 276
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=81.48 E-value=0.64 Score=38.81 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=16.3
Q ss_pred ccCCCc--EEEEcCCCchHHHHh
Q psy7786 4 YRNSRD--IIGIAFTGSGKTLVF 24 (252)
Q Consensus 4 ~~~g~d--~~~~a~tgsGKT~a~ 24 (252)
+++|.| +++-++||||||.+.
T Consensus 85 ~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 85 AFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHTTCCEEEEEECSTTSSHHHHH
T ss_pred HhcCCeeEEEEeCCCCCCCceEe
Confidence 567887 566789999999664
No 277
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=81.45 E-value=0.77 Score=34.77 Aligned_cols=18 Identities=28% Similarity=0.187 Sum_probs=15.3
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
.|+=+++.+|+|||||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 577789999999999953
No 278
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=81.28 E-value=1.8 Score=35.76 Aligned_cols=27 Identities=26% Similarity=0.126 Sum_probs=19.3
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPILMFC 32 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~~~~ 32 (252)
-.|+-+++.+++||||| ++++-+...+
T Consensus 59 ~~G~iv~I~G~pGsGKT-tLal~la~~~ 85 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKT-TVALHAVANA 85 (349)
T ss_dssp ETTSEEEEEESTTSSHH-HHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHH-HHHHHHHHHH
Confidence 35778999999999999 4444444333
No 279
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=81.25 E-value=2 Score=32.16 Aligned_cols=40 Identities=10% Similarity=-0.086 Sum_probs=26.0
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSR 56 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptr 56 (252)
.|+=.++.++.|||||.+. +-.+.+... .+-+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~l-l~~a~r~~~----------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEEL-IRRIRRAKI----------AKQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHH-HHHHHHHHH----------TTCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHH-HHHHHHHHH----------CCCEEEEEEecc
Confidence 4555678888999999554 344444432 245689988874
No 280
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=81.23 E-value=0.76 Score=37.20 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=16.0
Q ss_pred cCCCcEEEEcCCCchHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a 23 (252)
..+..+++.+++|||||..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELV 41 (304)
T ss_dssp STTSCEEEESCTTSCHHHH
T ss_pred CCCCcEEEECCCCchHHHH
Confidence 3567899999999999953
No 281
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=81.01 E-value=0.59 Score=38.18 Aligned_cols=15 Identities=27% Similarity=0.191 Sum_probs=12.6
Q ss_pred CcEEEEcCCCchHHH
Q psy7786 8 RDIIGIAFTGSGKTL 22 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~ 22 (252)
+=+++.+|||||||.
T Consensus 4 ~~i~i~GptgsGKt~ 18 (322)
T 3exa_A 4 KLVAIVGPTAVGKTK 18 (322)
T ss_dssp EEEEEECCTTSCHHH
T ss_pred cEEEEECCCcCCHHH
Confidence 347889999999993
No 282
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=80.82 E-value=0.69 Score=39.25 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=16.9
Q ss_pred cccCCCc--EEEEcCCCchHHHHh
Q psy7786 3 TYRNSRD--IIGIAFTGSGKTLVF 24 (252)
Q Consensus 3 ~~~~g~d--~~~~a~tgsGKT~a~ 24 (252)
.+++|.| +++-++||||||.+.
T Consensus 133 ~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 133 SALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHCCCceEEEEecCCCCCCeeEe
Confidence 3567887 466679999999775
No 283
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=80.81 E-value=0.71 Score=38.27 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=16.7
Q ss_pred ccCCCc--EEEEcCCCchHHHHh
Q psy7786 4 YRNSRD--IIGIAFTGSGKTLVF 24 (252)
Q Consensus 4 ~~~g~d--~~~~a~tgsGKT~a~ 24 (252)
+++|.| +++-++||||||.+.
T Consensus 73 ~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 73 AIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHcCCccceeeecCCCCCCCeEE
Confidence 567877 566789999999875
No 284
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=80.75 E-value=0.61 Score=38.01 Aligned_cols=13 Identities=46% Similarity=0.414 Sum_probs=11.7
Q ss_pred EEEEcCCCchHHH
Q psy7786 10 IIGIAFTGSGKTL 22 (252)
Q Consensus 10 ~~~~a~tgsGKT~ 22 (252)
+++.+|||||||.
T Consensus 13 i~i~GptgsGKt~ 25 (316)
T 3foz_A 13 IFLMGPTASGKTA 25 (316)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEECCCccCHHH
Confidence 7889999999993
No 285
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=80.59 E-value=0.84 Score=33.75 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=15.6
Q ss_pred cCCCcEEEEcCCCchHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~ 22 (252)
..++.+++.+++|||||.
T Consensus 8 ~~~~~I~l~G~~GsGKST 25 (184)
T 1y63_A 8 PKGINILITGTPGTGKTS 25 (184)
T ss_dssp CSSCEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 357789999999999995
No 286
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=80.55 E-value=3.1 Score=33.57 Aligned_cols=25 Identities=0% Similarity=-0.019 Sum_probs=21.5
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 220 GPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 220 ~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
+.++||||+|++.++.+++.|++.+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~g 52 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRLG 52 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCC
Confidence 4579999999999999999987654
No 287
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=80.45 E-value=0.7 Score=38.39 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=17.1
Q ss_pred cccCCCcE--EEEcCCCchHHHHh
Q psy7786 3 TYRNSRDI--IGIAFTGSGKTLVF 24 (252)
Q Consensus 3 ~~~~g~d~--~~~a~tgsGKT~a~ 24 (252)
.+++|.|. ++-++||||||.+.
T Consensus 87 ~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 87 NAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHhCCceeEEEeeCCCCCCCceEE
Confidence 35678874 66789999999775
No 288
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=80.37 E-value=0.61 Score=36.85 Aligned_cols=17 Identities=24% Similarity=0.114 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCchHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a 23 (252)
.+.+++.+|+|+|||..
T Consensus 64 ~~~vLl~G~~GtGKT~l 80 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTAL 80 (272)
T ss_dssp EEEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCcHHHH
Confidence 35799999999999954
No 289
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=80.24 E-value=2.1 Score=34.86 Aligned_cols=18 Identities=28% Similarity=0.074 Sum_probs=15.4
Q ss_pred cCCCcEEEEcCCCchHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~ 22 (252)
..|.-+++.+++|||||.
T Consensus 105 ~~G~i~~i~G~~GsGKT~ 122 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQ 122 (324)
T ss_dssp ETTSEEEEEESTTSSHHH
T ss_pred CCCcEEEEECCCCCCHhH
Confidence 457789999999999993
No 290
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=80.24 E-value=0.91 Score=34.26 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=16.0
Q ss_pred ccCCCcEEEEcCCCchHHHHh
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVF 24 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~ 24 (252)
+..|+=+.+.+|+|||||..+
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHH
Confidence 456777899999999999543
No 291
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=80.20 E-value=0.86 Score=33.05 Aligned_cols=16 Identities=31% Similarity=0.511 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCchHHH
Q psy7786 7 SRDIIGIAFTGSGKTL 22 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~ 22 (252)
|+-+.+.+++|||||.
T Consensus 4 ~~~i~l~G~~GsGKST 19 (173)
T 1kag_A 4 KRNIFLVGPMGAGKST 19 (173)
T ss_dssp CCCEEEECCTTSCHHH
T ss_pred CCeEEEECCCCCCHHH
Confidence 5779999999999994
No 292
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=80.18 E-value=0.73 Score=38.33 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=16.8
Q ss_pred cccCCCcE--EEEcCCCchHHHHh
Q psy7786 3 TYRNSRDI--IGIAFTGSGKTLVF 24 (252)
Q Consensus 3 ~~~~g~d~--~~~a~tgsGKT~a~ 24 (252)
.+++|.|. ++-++||||||.+.
T Consensus 98 ~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 98 QALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHhCCCceEEEEECCCCCCCceEe
Confidence 35678874 56689999999764
No 293
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=80.15 E-value=0.88 Score=36.96 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=15.1
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
.+..+++.+|+|+|||..
T Consensus 36 ~~~~lll~G~~GtGKT~l 53 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHL 53 (324)
T ss_dssp SCSSEEEECSSSSSHHHH
T ss_pred CCCeEEEECCCCCcHHHH
Confidence 356899999999999943
No 294
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=80.10 E-value=0.94 Score=33.82 Aligned_cols=19 Identities=32% Similarity=0.300 Sum_probs=15.8
Q ss_pred cCCCcEEEEcCCCchHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a 23 (252)
..|+=+.+.+|+|||||..
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECcCCCCHHHH
Confidence 3577788999999999953
No 295
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=79.93 E-value=0.82 Score=35.72 Aligned_cols=17 Identities=29% Similarity=0.622 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCchHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a 23 (252)
.+.+++.+|+|||||..
T Consensus 45 ~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 45699999999999943
No 296
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=79.88 E-value=0.8 Score=37.30 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCchHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a 23 (252)
.+.+++.+|+|+|||..
T Consensus 51 ~~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYL 67 (322)
T ss_dssp CCEEEEECSSSSCHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 45799999999999953
No 297
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=79.66 E-value=0.73 Score=39.22 Aligned_cols=18 Identities=33% Similarity=0.279 Sum_probs=14.8
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
.|.-+++.+|||||||..
T Consensus 166 ~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred cCCeEEEECCCCCCHHHH
Confidence 455689999999999954
No 298
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=79.64 E-value=2 Score=35.67 Aligned_cols=27 Identities=22% Similarity=0.156 Sum_probs=20.4
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCL 33 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~ 33 (252)
.|.=+++.+|+||||| ++++.+...+.
T Consensus 60 ~G~i~~I~GppGsGKS-TLal~la~~~~ 86 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKT-TLALHAIAEAQ 86 (356)
T ss_dssp TTEEEEEEESTTSSHH-HHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHH-HHHHHHHHHHH
Confidence 4667899999999999 56666655443
No 299
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=79.62 E-value=0.95 Score=36.36 Aligned_cols=16 Identities=19% Similarity=0.042 Sum_probs=13.6
Q ss_pred CCcEEEEcCCCchHHH
Q psy7786 7 SRDIIGIAFTGSGKTL 22 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~ 22 (252)
.+-+++.+|+|+|||.
T Consensus 36 p~~lLl~GppGtGKT~ 51 (293)
T 3t15_A 36 PLILGIWGGKGQGKSF 51 (293)
T ss_dssp CSEEEEEECTTSCHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 3568899999999995
No 300
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=79.60 E-value=1.7 Score=37.79 Aligned_cols=28 Identities=18% Similarity=0.084 Sum_probs=20.7
Q ss_pred ccCCCcEEEEcCCCchHHHHhHHHHHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFC 32 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~~lp~~~~~ 32 (252)
+..|.=+++.+++|+||| +|++-+...+
T Consensus 239 l~~G~l~li~G~pG~GKT-~lal~~a~~~ 266 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMS-TFVRQQALQW 266 (503)
T ss_dssp CCTTCEEEEEESSCHHHH-HHHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCch-HHHHHHHHHH
Confidence 346777899999999999 5655555444
No 301
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=79.31 E-value=0.84 Score=37.70 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=15.4
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
.++.+++.+|+|+|||..
T Consensus 43 ~~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCCEEECBCTTSSHHHH
T ss_pred CCCcEEEECCCCCCHHHH
Confidence 466899999999999953
No 302
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=79.20 E-value=0.83 Score=39.15 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=16.8
Q ss_pred ccCCCc--EEEEcCCCchHHHHh
Q psy7786 4 YRNSRD--IIGIAFTGSGKTLVF 24 (252)
Q Consensus 4 ~~~g~d--~~~~a~tgsGKT~a~ 24 (252)
+++|.| +++-++||||||.+.
T Consensus 132 ~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 132 NFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHTTCCEEEEEESSTTSSHHHHH
T ss_pred hhcCCceEEEEeCCCCCCCCEEe
Confidence 467887 566789999999775
No 303
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=78.91 E-value=1.1 Score=33.12 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=13.6
Q ss_pred CCcEEEEcCCCchHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a 23 (252)
|+=+.+.+|+|+|||..
T Consensus 1 ~~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCCEEEESSSSSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 34578899999999953
No 304
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=78.87 E-value=0.9 Score=33.42 Aligned_cols=17 Identities=18% Similarity=0.354 Sum_probs=14.3
Q ss_pred CCCcEEEEcCCCchHHH
Q psy7786 6 NSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~ 22 (252)
.|+-+++.+++|||||.
T Consensus 2 ~~~~I~i~G~~GsGKsT 18 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTT 18 (192)
T ss_dssp -CCEEEEECCTTSCHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 46779999999999994
No 305
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=78.86 E-value=1.3 Score=37.39 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=14.6
Q ss_pred EEEEcCCCchHHHHhHHHHHHH
Q psy7786 10 IIGIAFTGSGKTLVFVLPILMF 31 (252)
Q Consensus 10 ~~~~a~tgsGKT~a~~lp~~~~ 31 (252)
+++.+|||||||. ...-+.+.
T Consensus 5 i~i~GptgsGKtt-la~~La~~ 25 (409)
T 3eph_A 5 IVIAGTTGVGKSQ-LSIQLAQK 25 (409)
T ss_dssp EEEEECSSSSHHH-HHHHHHHH
T ss_pred EEEECcchhhHHH-HHHHHHHH
Confidence 6889999999993 33333333
No 306
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=78.84 E-value=0.88 Score=37.13 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCchHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a 23 (252)
.+.+++.+|+|+|||..
T Consensus 45 ~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CSEEEEESSSSSCHHHH
T ss_pred CceEEEECCCCccHHHH
Confidence 36799999999999953
No 307
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=78.64 E-value=0.87 Score=32.80 Aligned_cols=14 Identities=36% Similarity=0.437 Sum_probs=12.2
Q ss_pred cEEEEcCCCchHHH
Q psy7786 9 DIIGIAFTGSGKTL 22 (252)
Q Consensus 9 d~~~~a~tgsGKT~ 22 (252)
-+++.+++|||||.
T Consensus 3 ~I~l~G~~GsGKsT 16 (179)
T 3lw7_A 3 VILITGMPGSGKSE 16 (179)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999995
No 308
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=78.61 E-value=0.67 Score=40.46 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=16.7
Q ss_pred ccCCCcEEEEcCCCchHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~ 22 (252)
+..|.++++.+|+|+|||.
T Consensus 38 l~~~~~VLL~GpPGtGKT~ 56 (500)
T 3nbx_X 38 ALSGESVFLLGPPGIAKSL 56 (500)
T ss_dssp HHHTCEEEEECCSSSSHHH
T ss_pred HhcCCeeEeecCchHHHHH
Confidence 4568899999999999995
No 309
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=78.60 E-value=1.1 Score=34.44 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=16.2
Q ss_pred ccCCCcEEEEcCCCchHHHHh
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVF 24 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~ 24 (252)
.-.|+=+++.+|+|||||..+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 346778899999999999643
No 310
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=78.33 E-value=2.2 Score=31.34 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=14.7
Q ss_pred EEEEcCCCchHHHHhHHHHHHHH
Q psy7786 10 IIGIAFTGSGKTLVFVLPILMFC 32 (252)
Q Consensus 10 ~~~~a~tgsGKT~a~~lp~~~~~ 32 (252)
+.+.+++|||||. ++.-++..+
T Consensus 7 i~i~G~sGsGKTT-l~~~L~~~l 28 (169)
T 1xjc_A 7 WQVVGYKHSGKTT-LMEKWVAAA 28 (169)
T ss_dssp EEEECCTTSSHHH-HHHHHHHHH
T ss_pred EEEECCCCCCHHH-HHHHHHHhh
Confidence 6788999999994 333344433
No 311
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=78.26 E-value=1.1 Score=33.49 Aligned_cols=18 Identities=33% Similarity=0.669 Sum_probs=15.2
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
.|+-+++.+++|||||..
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467799999999999943
No 312
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=78.25 E-value=1.1 Score=37.18 Aligned_cols=18 Identities=50% Similarity=0.654 Sum_probs=15.3
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
.+.++++.+|+|+|||..
T Consensus 71 ~~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCCCEEEECCCCCCHHHH
Confidence 456899999999999953
No 313
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=78.08 E-value=0.9 Score=35.67 Aligned_cols=13 Identities=38% Similarity=0.082 Sum_probs=11.6
Q ss_pred EEEEcCCCchHHH
Q psy7786 10 IIGIAFTGSGKTL 22 (252)
Q Consensus 10 ~~~~a~tgsGKT~ 22 (252)
+++.++||||||.
T Consensus 4 i~I~G~~GSGKST 16 (253)
T 2ze6_A 4 HLIYGPTCSGKTD 16 (253)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCcCHHH
Confidence 6889999999994
No 314
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=78.02 E-value=0.97 Score=38.84 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=15.2
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
.++.+++.+|+|+|||..
T Consensus 62 ~~~~iLl~GppGtGKT~l 79 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTAL 79 (456)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCeEEEECCCcCCHHHH
Confidence 356899999999999954
No 315
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=77.64 E-value=1.1 Score=33.61 Aligned_cols=21 Identities=29% Similarity=-0.013 Sum_probs=17.0
Q ss_pred CcccCCCcEEEEcCCCchHHH
Q psy7786 2 VTYRNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 2 ~~~~~g~d~~~~a~tgsGKT~ 22 (252)
|.+..|.-+.+.+++|||||.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKST 36 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTT 36 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHH
T ss_pred ccCCCCeEEEEECCCCCCHHH
Confidence 445667778899999999994
No 316
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=77.58 E-value=1.2 Score=34.53 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=16.1
Q ss_pred ccCCCcEEEEcCCCchHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~ 22 (252)
+..|.=+.+.+|+|||||.
T Consensus 28 i~~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKST 46 (235)
T ss_dssp ECTTCEEEEECSTTSSHHH
T ss_pred EcCCCEEEEECCCCCcHHH
Confidence 4567788999999999994
No 317
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=77.39 E-value=1.9 Score=31.82 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=15.1
Q ss_pred EEEEcCCCchHHHHhHHHHHHHH
Q psy7786 10 IIGIAFTGSGKTLVFVLPILMFC 32 (252)
Q Consensus 10 ~~~~a~tgsGKT~a~~lp~~~~~ 32 (252)
+++.+++||||| +++--++..+
T Consensus 9 i~i~G~sGsGKT-Tl~~~l~~~l 30 (174)
T 1np6_A 9 LAFAAWSGTGKT-TLLKKLIPAL 30 (174)
T ss_dssp EEEECCTTSCHH-HHHHHHHHHH
T ss_pred EEEEeCCCCCHH-HHHHHHHHhc
Confidence 678999999999 3433444443
No 318
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=77.19 E-value=1.2 Score=36.91 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCchHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a 23 (252)
.+.+++.+|+|+|||..
T Consensus 84 ~~~iLL~GppGtGKT~l 100 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYL 100 (355)
T ss_dssp CCCEEEECSTTSCHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 46799999999999953
No 319
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=77.11 E-value=0.94 Score=36.60 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCchHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a 23 (252)
.+.+++.+|+|+|||..
T Consensus 38 ~~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCCEEECCTTCCCHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 46899999999999943
No 320
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=76.91 E-value=1.3 Score=36.09 Aligned_cols=16 Identities=31% Similarity=0.304 Sum_probs=14.1
Q ss_pred CcEEEEcCCCchHHHH
Q psy7786 8 RDIIGIAFTGSGKTLV 23 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a 23 (252)
..+++.+|+|+|||..
T Consensus 56 ~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTL 71 (338)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CeEEEECcCCCCHHHH
Confidence 5899999999999953
No 321
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=76.79 E-value=1.4 Score=33.97 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=17.0
Q ss_pred ccCCCcEEEEcCCCchHHHHh
Q psy7786 4 YRNSRDIIGIAFTGSGKTLVF 24 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a~ 24 (252)
+..|.=+.+.+|+|||||...
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHH
Confidence 346778999999999999543
No 322
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=76.62 E-value=0.74 Score=36.17 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCchHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a 23 (252)
.+.+++.+|+|||||..
T Consensus 44 ~~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLL 60 (268)
T ss_dssp CSCCCCBCSSCSSHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 45699999999999953
No 323
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=76.46 E-value=0.97 Score=34.72 Aligned_cols=20 Identities=25% Similarity=0.164 Sum_probs=12.1
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|+=+.+.+|+|||||..
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp EECCCEEEEECSCC----CH
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 34577788999999999943
No 324
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=76.43 E-value=1.1 Score=32.57 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.2
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
.|+-+++.+++|||||..
T Consensus 7 ~g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp TSEEEEEECSTTSCHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 466789999999999953
No 325
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=76.38 E-value=3.2 Score=33.59 Aligned_cols=18 Identities=28% Similarity=0.132 Sum_probs=15.1
Q ss_pred cCCCcEEEEcCCCchHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~ 22 (252)
..|.-+++.+++|||||.
T Consensus 96 ~~g~i~~i~G~~gsGKT~ 113 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQ 113 (322)
T ss_dssp ETTEEEEEEESTTSSHHH
T ss_pred cCCeEEEEECCCCCCHHH
Confidence 356778999999999993
No 326
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=76.32 E-value=1.2 Score=36.81 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=15.3
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
..+.+++.+|+|+|||..
T Consensus 116 ~~~~vLl~GppGtGKT~l 133 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLI 133 (357)
T ss_dssp CCSEEEEESSTTSSHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 457899999999999953
No 327
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=76.32 E-value=1.3 Score=36.93 Aligned_cols=19 Identities=37% Similarity=0.386 Sum_probs=15.7
Q ss_pred CCCc--EEEEcCCCchHHHHh
Q psy7786 6 NSRD--IIGIAFTGSGKTLVF 24 (252)
Q Consensus 6 ~g~d--~~~~a~tgsGKT~a~ 24 (252)
.|.+ +++-++||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4777 688999999999664
No 328
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=76.09 E-value=1.2 Score=37.34 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a 23 (252)
++.+++.+|+|+|||..
T Consensus 148 ~~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTML 164 (389)
T ss_dssp CSEEEEESSTTSCHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 57899999999999953
No 329
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=76.00 E-value=1.2 Score=36.86 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=16.5
Q ss_pred ccCCCc--EEEEcCCCchHHHHh
Q psy7786 4 YRNSRD--IIGIAFTGSGKTLVF 24 (252)
Q Consensus 4 ~~~g~d--~~~~a~tgsGKT~a~ 24 (252)
+++|.| +++-++||||||.+.
T Consensus 90 ~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 90 LLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhCCCceEEEEecCCCCCCCeEE
Confidence 567777 466789999999774
No 330
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.92 E-value=1.3 Score=37.53 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCchHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a 23 (252)
.+-+++.+|+|||||+.
T Consensus 182 prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CCCEEEESCSSSSHHHH
T ss_pred CCceEEeCCCCCCHHHH
Confidence 46799999999999954
No 331
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.90 E-value=1.2 Score=38.14 Aligned_cols=17 Identities=29% Similarity=0.471 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCchHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a 23 (252)
.+-+++.+|+|||||+.
T Consensus 215 prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLL 231 (434)
T ss_dssp CCEEEEESCTTSSHHHH
T ss_pred CCeeEEECcCCCCHHHH
Confidence 46799999999999954
No 332
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=75.56 E-value=1.4 Score=32.69 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=15.3
Q ss_pred cCCCcEEEEcCCCchHH
Q psy7786 5 RNSRDIIGIAFTGSGKT 21 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT 21 (252)
..|+-+++.+++|+|||
T Consensus 14 v~G~gvli~G~SGaGKS 30 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKS 30 (181)
T ss_dssp ETTEEEEEEESSSSSHH
T ss_pred ECCEEEEEEcCCCCCHH
Confidence 46788999999999999
No 333
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=75.36 E-value=1.1 Score=36.73 Aligned_cols=15 Identities=33% Similarity=0.246 Sum_probs=12.9
Q ss_pred CcEEEEcCCCchHHH
Q psy7786 8 RDIIGIAFTGSGKTL 22 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~ 22 (252)
+-+++.+|||||||.
T Consensus 6 ~~i~i~GptGsGKTt 20 (323)
T 3crm_A 6 PAIFLMGPTAAGKTD 20 (323)
T ss_dssp EEEEEECCTTSCHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 358899999999994
No 334
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=75.14 E-value=1.3 Score=32.25 Aligned_cols=14 Identities=43% Similarity=0.584 Sum_probs=12.2
Q ss_pred cEEEEcCCCchHHH
Q psy7786 9 DIIGIAFTGSGKTL 22 (252)
Q Consensus 9 d~~~~a~tgsGKT~ 22 (252)
-+++.+++|||||.
T Consensus 4 ~I~i~G~~GsGKST 17 (181)
T 1ly1_A 4 IILTIGCPGSGKST 17 (181)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEecCCCCCHHH
Confidence 37899999999995
No 335
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=75.01 E-value=0.8 Score=37.42 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=14.9
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
.+.++++.+|+|+|||..
T Consensus 44 ~~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GGCCEEEECCGGGCTTHH
T ss_pred CCceEEEECCCCccHHHH
Confidence 345799999999999953
No 336
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=74.98 E-value=1.4 Score=31.78 Aligned_cols=14 Identities=21% Similarity=-0.237 Sum_probs=12.2
Q ss_pred cEEEEcCCCchHHH
Q psy7786 9 DIIGIAFTGSGKTL 22 (252)
Q Consensus 9 d~~~~a~tgsGKT~ 22 (252)
-+++.+++|||||.
T Consensus 3 ~i~l~G~~GsGKsT 16 (173)
T 3kb2_A 3 LIILEGPDCCFKST 16 (173)
T ss_dssp EEEEECSSSSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999994
No 337
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=74.90 E-value=1.5 Score=34.19 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=13.0
Q ss_pred cEEEEcCCCchHHHH
Q psy7786 9 DIIGIAFTGSGKTLV 23 (252)
Q Consensus 9 d~~~~a~tgsGKT~a 23 (252)
.+++.+|+|||||..
T Consensus 51 g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHL 65 (254)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 489999999999943
No 338
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.64 E-value=1.7 Score=35.47 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=13.8
Q ss_pred CcEEEEcCCCchHHHH
Q psy7786 8 RDIIGIAFTGSGKTLV 23 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a 23 (252)
.++++.+|+|+|||..
T Consensus 59 ~~~ll~G~~G~GKT~l 74 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTST 74 (353)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5699999999999943
No 339
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=74.44 E-value=1.5 Score=37.21 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=16.3
Q ss_pred ccCCCc--EEEEcCCCchHHHHh
Q psy7786 4 YRNSRD--IIGIAFTGSGKTLVF 24 (252)
Q Consensus 4 ~~~g~d--~~~~a~tgsGKT~a~ 24 (252)
+++|.| +++-++||||||.+.
T Consensus 150 ~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 150 IFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHTTCEEEEEEEESTTSSHHHHH
T ss_pred HhcCCceeEEeecCCCCCCCeEe
Confidence 567777 566789999999764
No 340
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=74.32 E-value=1.6 Score=32.48 Aligned_cols=18 Identities=28% Similarity=0.182 Sum_probs=15.6
Q ss_pred cCCCcEEEEcCCCchHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~ 22 (252)
..|+-+++.++.|||||.
T Consensus 2 ~~~~~I~l~G~~GsGKsT 19 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTT 19 (204)
T ss_dssp CCCCEEEEECCTTSSHHH
T ss_pred CCCcEEEEEcCCCCCHHH
Confidence 357789999999999994
No 341
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=73.96 E-value=1.4 Score=36.86 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=16.5
Q ss_pred ccCCCc--EEEEcCCCchHHHHh
Q psy7786 4 YRNSRD--IIGIAFTGSGKTLVF 24 (252)
Q Consensus 4 ~~~g~d--~~~~a~tgsGKT~a~ 24 (252)
+++|.| +++-++||||||.+.
T Consensus 75 ~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 75 AVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhcCCceEEEEECCCCCCCeEee
Confidence 567887 456789999999775
No 342
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=73.78 E-value=1.4 Score=36.68 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=16.2
Q ss_pred ccCCCc--EEEEcCCCchHHHHh
Q psy7786 4 YRNSRD--IIGIAFTGSGKTLVF 24 (252)
Q Consensus 4 ~~~g~d--~~~~a~tgsGKT~a~ 24 (252)
+++|.| +++-++||||||.+.
T Consensus 84 ~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 84 VIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHTTCEEEEEEEECTTSSHHHHH
T ss_pred HhCCCceEEEEeCCCCCCCceEE
Confidence 567777 566789999999654
No 343
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=73.72 E-value=2.1 Score=32.14 Aligned_cols=19 Identities=21% Similarity=0.003 Sum_probs=16.0
Q ss_pred ccCCCcEEEEcCCCchHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~ 22 (252)
+..|.=+++.+++|+|||.
T Consensus 17 i~~G~~~~i~G~~GsGKTt 35 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTT 35 (220)
T ss_dssp BCTTSEEEEECSTTSSHHH
T ss_pred CcCCEEEEEECCCCCCHHH
Confidence 4467778999999999994
No 344
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=73.66 E-value=1.6 Score=33.08 Aligned_cols=15 Identities=27% Similarity=0.264 Sum_probs=13.1
Q ss_pred cEEEEcCCCchHHHH
Q psy7786 9 DIIGIAFTGSGKTLV 23 (252)
Q Consensus 9 d~~~~a~tgsGKT~a 23 (252)
.+++.+++|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 589999999999943
No 345
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.63 E-value=1.5 Score=37.41 Aligned_cols=17 Identities=29% Similarity=0.546 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCchHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a 23 (252)
.|-+++.+|+|||||+.
T Consensus 206 prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTML 222 (428)
T ss_dssp CCEEEEESCTTTTHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 35699999999999953
No 346
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=73.58 E-value=1 Score=33.00 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=14.7
Q ss_pred CCCcEEEEcCCCchHHH
Q psy7786 6 NSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~ 22 (252)
.|.-+++.++.|||||.
T Consensus 3 ~g~~I~l~G~~GsGKST 19 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGT 19 (186)
T ss_dssp CEEEEEEECCTTSCHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 46678999999999994
No 347
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=73.20 E-value=1.5 Score=36.64 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=16.1
Q ss_pred ccCCCc--EEEEcCCCchHHHHh
Q psy7786 4 YRNSRD--IIGIAFTGSGKTLVF 24 (252)
Q Consensus 4 ~~~g~d--~~~~a~tgsGKT~a~ 24 (252)
+++|.| +++-++||||||.+.
T Consensus 96 ~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 96 VLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHTCCEEEEEECSTTSSHHHHH
T ss_pred HhCCceEEEEeecCCCCCcceec
Confidence 467777 566789999999654
No 348
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=73.17 E-value=1.4 Score=35.27 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=13.7
Q ss_pred CcEEEEcCCCchHHHH
Q psy7786 8 RDIIGIAFTGSGKTLV 23 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a 23 (252)
..+++.+|+|||||..
T Consensus 48 ~~~ll~G~~GtGKt~l 63 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTEL 63 (311)
T ss_dssp EEEEEESCSSSSHHHH
T ss_pred eEEEEECCCCcCHHHH
Confidence 3699999999999953
No 349
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=73.13 E-value=2.1 Score=33.16 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=16.3
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.=+.+.+|+|||||..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 45677889999999999943
No 350
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=75.42 E-value=0.71 Score=33.67 Aligned_cols=25 Identities=8% Similarity=0.129 Sum_probs=21.9
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHH
Q psy7786 220 GPYGLIICPSRELARQTHDIIQYYC 244 (252)
Q Consensus 220 ~~~~LIf~~tr~~a~~i~~~l~~l~ 244 (252)
+.++||||++++.|+.+++.|++.+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~~ 54 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREAG 54 (170)
Confidence 4579999999999999999997654
No 351
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.06 E-value=1.5 Score=37.48 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCchHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a 23 (252)
-+-+++.+|+|||||+.
T Consensus 215 prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp CCEEEEESCTTSSHHHH
T ss_pred CCeEEEECCCCCcHHHH
Confidence 36799999999999954
No 352
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=72.89 E-value=1.5 Score=36.75 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=16.4
Q ss_pred ccCCCc--EEEEcCCCchHHHHh
Q psy7786 4 YRNSRD--IIGIAFTGSGKTLVF 24 (252)
Q Consensus 4 ~~~g~d--~~~~a~tgsGKT~a~ 24 (252)
+++|.| +++-++||||||.+.
T Consensus 130 ~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 130 IFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHTTCEEEEEEESCTTSSHHHHH
T ss_pred HhcCCceEEEEecCCCCCCCeEe
Confidence 567776 566789999999764
No 353
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=72.87 E-value=1.8 Score=33.91 Aligned_cols=19 Identities=42% Similarity=0.569 Sum_probs=16.6
Q ss_pred cCCCcEEEEcCCCchHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a 23 (252)
+.|+.+++.+++|||||..
T Consensus 46 l~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp HTTCCEEEECSTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3589999999999999954
No 354
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=72.60 E-value=1.8 Score=35.56 Aligned_cols=17 Identities=41% Similarity=0.595 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCchHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a 23 (252)
++.+++.+++|+|||..
T Consensus 45 ~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCEEEEECTTSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 66899999999999953
No 355
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=72.53 E-value=1.6 Score=32.59 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=14.8
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
.|.-+.+.+++|||||..
T Consensus 24 ~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp CCEEEEEECSTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 466788999999999943
No 356
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=72.47 E-value=1.9 Score=37.53 Aligned_cols=19 Identities=37% Similarity=0.579 Sum_probs=15.7
Q ss_pred cCCCcEEEEcCCCchHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a 23 (252)
...+.+++.+|+|||||+.
T Consensus 236 ~~~~~vLL~GppGtGKT~l 254 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLI 254 (489)
T ss_dssp CCCCEEEEECSTTSSHHHH
T ss_pred CCCCcEEEECcCCCCHHHH
Confidence 3456799999999999963
No 357
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=72.25 E-value=1.5 Score=33.05 Aligned_cols=17 Identities=24% Similarity=0.216 Sum_probs=14.2
Q ss_pred CCCcEEEEcCCCchHHH
Q psy7786 6 NSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~ 22 (252)
.|.=+.+.+++|||||.
T Consensus 21 ~g~~v~I~G~sGsGKST 37 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKST 37 (208)
T ss_dssp SCEEEEEECCTTSCTHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 45667899999999994
No 358
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=72.05 E-value=2.4 Score=32.35 Aligned_cols=20 Identities=20% Similarity=0.102 Sum_probs=16.5
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.=+.+.+|+|||||..
T Consensus 32 i~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp EETTCCEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 45678889999999999943
No 359
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=72.01 E-value=1.7 Score=35.84 Aligned_cols=15 Identities=27% Similarity=0.364 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHH
Q psy7786 9 DIIGIAFTGSGKTLV 23 (252)
Q Consensus 9 d~~~~a~tgsGKT~a 23 (252)
.+++.+|+|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 799999999999954
No 360
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=71.77 E-value=2.2 Score=31.41 Aligned_cols=15 Identities=40% Similarity=0.412 Sum_probs=12.5
Q ss_pred cEEEEcCCCchHHHH
Q psy7786 9 DIIGIAFTGSGKTLV 23 (252)
Q Consensus 9 d~~~~a~tgsGKT~a 23 (252)
.+.+.+|+|||||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999954
No 361
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=71.51 E-value=1.7 Score=31.90 Aligned_cols=17 Identities=29% Similarity=0.274 Sum_probs=14.5
Q ss_pred CCCcEEEEcCCCchHHH
Q psy7786 6 NSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~ 22 (252)
.++-+++.++.|||||.
T Consensus 4 ~~~~I~l~G~~GsGKST 20 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTT 20 (193)
T ss_dssp CCEEEEEEESTTSSHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 45678999999999995
No 362
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=71.47 E-value=1.8 Score=35.69 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCchHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a 23 (252)
++.+++.+|+|+|||..
T Consensus 45 ~~~vll~G~~G~GKT~l 61 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFV 61 (384)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 45699999999999943
No 363
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=71.44 E-value=2 Score=33.99 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=13.0
Q ss_pred cEEEEcCCCchHHHH
Q psy7786 9 DIIGIAFTGSGKTLV 23 (252)
Q Consensus 9 d~~~~a~tgsGKT~a 23 (252)
.+++.+|+|||||..
T Consensus 75 gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHL 89 (278)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCcChHHHH
Confidence 489999999999953
No 364
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=71.44 E-value=4 Score=39.48 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=24.0
Q ss_pred EEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcH
Q psy7786 11 IGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSR 56 (252)
Q Consensus 11 ~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptr 56 (252)
+|.|..|||||.+-+-=+...+.... .+.+.|+++|..
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~--------~~~~il~lVP~q 42 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAP--------FGKPIIFLVPDQ 42 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCT--------TSSCEEEECCGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCC--------CCCcEEEEecCc
Confidence 67889999999655433433332211 234688888866
No 365
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=71.43 E-value=1.8 Score=32.79 Aligned_cols=19 Identities=26% Similarity=0.121 Sum_probs=15.5
Q ss_pred cCCCcEEEEcCCCchHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a 23 (252)
..|.=+.+.+|+|||||..
T Consensus 23 ~~G~~~~l~G~nGsGKSTl 41 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQL 41 (231)
T ss_dssp ESSEEEEEEESTTSSHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 4566789999999999943
No 366
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=71.34 E-value=1.8 Score=37.02 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCchHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a 23 (252)
.+.+++.+|+|+|||..
T Consensus 167 ~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CSEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 46799999999999953
No 367
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=71.31 E-value=2.5 Score=33.33 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=16.5
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.=+.+.+|+|||||..
T Consensus 43 i~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 44677889999999999953
No 368
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=71.30 E-value=2.3 Score=33.21 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=16.3
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.=+.+.+|+|||||..
T Consensus 32 i~~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34677788999999999954
No 369
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=71.24 E-value=1.9 Score=34.25 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=13.1
Q ss_pred cEEEEcCCCchHHHH
Q psy7786 9 DIIGIAFTGSGKTLV 23 (252)
Q Consensus 9 d~~~~a~tgsGKT~a 23 (252)
.+++.+|+|||||..
T Consensus 46 GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLL 60 (274)
T ss_dssp EEEEESSTTSCHHHH
T ss_pred eEEEECCCCCcHHHH
Confidence 399999999999954
No 370
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=71.09 E-value=2.3 Score=32.54 Aligned_cols=20 Identities=15% Similarity=-0.006 Sum_probs=16.3
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.-+.+.+++|+|||..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl 40 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQI 40 (243)
T ss_dssp EETTSEEEEECCTTSSHHHH
T ss_pred CcCCeEEEEECCCCCcHHHH
Confidence 34677889999999999943
No 371
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=71.09 E-value=2.4 Score=32.70 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=16.3
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.-+.+.+|+|||||.-
T Consensus 31 i~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp EETTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34677788999999999943
No 372
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=71.07 E-value=9.1 Score=27.30 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=33.6
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCcccCcchhhhh
Q psy7786 46 GPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIK 96 (252)
Q Consensus 46 ~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~l~ 96 (252)
+-++||.+++++-+..+.+.++.. + +.+..++|+.+..++.+.++
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~--~~~~~~hg~~~~~~r~~~~~ 79 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----G--YPCDKIHGGMIQEDRFDVMN 79 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----T--CCEEEECTTSCHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----C--CcEEEEeCCCCHHHHHHHHH
Confidence 346999999999999888877653 4 67888899877655544443
No 373
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=71.06 E-value=1.4 Score=32.44 Aligned_cols=16 Identities=25% Similarity=0.206 Sum_probs=13.0
Q ss_pred CcEEEEcCCCchHHHH
Q psy7786 8 RDIIGIAFTGSGKTLV 23 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a 23 (252)
+-+++.+++|||||..
T Consensus 3 ~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 4468899999999953
No 374
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=71.00 E-value=2.3 Score=34.48 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=16.7
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.-+.+.+|+|||||..
T Consensus 77 i~~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHH
T ss_pred EcCCCEEEEECCCCchHHHH
Confidence 45678899999999999943
No 375
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=70.99 E-value=2.2 Score=33.68 Aligned_cols=20 Identities=35% Similarity=0.322 Sum_probs=16.3
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.=+.+.+|+|||||..
T Consensus 29 i~~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 45677788999999999943
No 376
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=70.82 E-value=2 Score=32.98 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=15.7
Q ss_pred ccCCCcEEEEcCCCchHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~ 22 (252)
+..|.=+.+.+|+|||||.
T Consensus 27 i~~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKST 45 (224)
T ss_dssp EETTCEEEEEECTTSCHHH
T ss_pred EcCCCEEEEECCCCCCHHH
Confidence 3467778899999999994
No 377
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=70.76 E-value=2.6 Score=34.17 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=16.3
Q ss_pred ccCCCcEEEEcCCCchHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~ 22 (252)
+..|+-+.+.+|+|||||.
T Consensus 123 i~~Ge~vaIvGpsGsGKST 141 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSM 141 (305)
T ss_dssp CTTCSEEEEECSSSSSHHH
T ss_pred ecCCCEEEEECCCCCcHHH
Confidence 4568889999999999994
No 378
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=70.65 E-value=2.1 Score=33.93 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=16.3
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.=+.+.+|+|||||..
T Consensus 34 i~~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp EETTCEEEEECCTTSCHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH
Confidence 34677788999999999943
No 379
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=70.62 E-value=2.8 Score=31.25 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCchHHHHh
Q psy7786 7 SRDIIGIAFTGSGKTLVF 24 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~ 24 (252)
|.-+.+.+++|+|||...
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 456789999999999654
No 380
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=70.57 E-value=2.1 Score=33.20 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=16.3
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.=+.+.+|+|||||..
T Consensus 29 i~~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34677788999999999953
No 381
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=70.37 E-value=2.2 Score=33.57 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=16.3
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.=+.+.+|+|||||.-
T Consensus 30 i~~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EeCCCEEEEECCCCCCHHHH
Confidence 34677788999999999943
No 382
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=70.32 E-value=1.9 Score=31.51 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=14.8
Q ss_pred CCCcEEEEcCCCchHHH
Q psy7786 6 NSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~ 22 (252)
.|.-+++.++.|||||.
T Consensus 4 ~g~~i~l~G~~GsGKST 20 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTT 20 (179)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 46778999999999995
No 383
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=70.29 E-value=1.9 Score=32.40 Aligned_cols=18 Identities=33% Similarity=0.050 Sum_probs=14.2
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
.|.=+.+.+++|||||..
T Consensus 5 ~~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CCEEEEEEESTTSSHHHH
T ss_pred CcEEEEEECCCCCCHHHH
Confidence 455578999999999953
No 384
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=70.28 E-value=2.4 Score=36.35 Aligned_cols=18 Identities=39% Similarity=0.565 Sum_probs=15.2
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
..+++++.+|+|+|||..
T Consensus 49 ~~~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEI 66 (444)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCceEEEEcCCCCCHHHH
Confidence 357899999999999953
No 385
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=70.27 E-value=1.9 Score=32.54 Aligned_cols=14 Identities=43% Similarity=0.439 Sum_probs=12.2
Q ss_pred EEEEcCCCchHHHH
Q psy7786 10 IIGIAFTGSGKTLV 23 (252)
Q Consensus 10 ~~~~a~tgsGKT~a 23 (252)
.+++++.|||||..
T Consensus 8 ~l~tG~pGsGKT~~ 21 (199)
T 2r2a_A 8 CLITGTPGSGKTLK 21 (199)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEEeCCCCCHHHH
Confidence 57899999999964
No 386
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=70.23 E-value=6.9 Score=32.01 Aligned_cols=43 Identities=16% Similarity=0.029 Sum_probs=27.2
Q ss_pred CCCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSREL 58 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptreL 58 (252)
.| -+.+.+++||||| ++++.++....... .+-+++++..-..+
T Consensus 28 ~G-iteI~G~pGsGKT-tL~Lq~~~~~~~~g--------~g~~vlyId~E~s~ 70 (333)
T 3io5_A 28 SG-LLILAGPSKSFKS-NFGLTMVSSYMRQY--------PDAVCLFYDSEFGI 70 (333)
T ss_dssp SE-EEEEEESSSSSHH-HHHHHHHHHHHHHC--------TTCEEEEEESSCCC
T ss_pred CC-eEEEECCCCCCHH-HHHHHHHHHHHhcC--------CCceEEEEeccchh
Confidence 35 4789999999999 55565555544321 13457777654444
No 387
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=69.90 E-value=2.1 Score=35.65 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=13.4
Q ss_pred cEEEEcCCCchHHHHh
Q psy7786 9 DIIGIAFTGSGKTLVF 24 (252)
Q Consensus 9 d~~~~a~tgsGKT~a~ 24 (252)
-.++.+|||||||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999655
No 388
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=69.89 E-value=2.1 Score=31.21 Aligned_cols=15 Identities=27% Similarity=0.259 Sum_probs=12.4
Q ss_pred cEEEEcCCCchHHHH
Q psy7786 9 DIIGIAFTGSGKTLV 23 (252)
Q Consensus 9 d~~~~a~tgsGKT~a 23 (252)
=.++.+++|||||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 357899999999954
No 389
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=69.81 E-value=1.2 Score=40.62 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=16.9
Q ss_pred cccCCCc--EEEEcCCCchHHHHh
Q psy7786 3 TYRNSRD--IIGIAFTGSGKTLVF 24 (252)
Q Consensus 3 ~~~~g~d--~~~~a~tgsGKT~a~ 24 (252)
.+++|.| +++-++||||||.+.
T Consensus 457 ~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 457 CSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHhCCceEEEEccCCCCCchhhcc
Confidence 3578887 556689999999764
No 390
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=69.78 E-value=2.1 Score=31.93 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=13.2
Q ss_pred CcEEEEcCCCchHHH
Q psy7786 8 RDIIGIAFTGSGKTL 22 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~ 22 (252)
+-+++.+++|||||.
T Consensus 19 ~~I~l~G~~GsGKST 33 (202)
T 3t61_A 19 GSIVVMGVSGSGKSS 33 (202)
T ss_dssp SCEEEECSTTSCHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 468999999999995
No 391
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.69 E-value=1.7 Score=37.45 Aligned_cols=17 Identities=35% Similarity=0.513 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCchHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a 23 (252)
-+-+++.+|+|||||+.
T Consensus 243 prGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLC 259 (467)
T ss_dssp CSEEEECSCTTSSHHHH
T ss_pred CCceEeeCCCCCcHHHH
Confidence 46799999999999953
No 392
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=69.64 E-value=2.3 Score=33.08 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=16.3
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.-+.+.+|+|||||.-
T Consensus 25 i~~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34677788999999999953
No 393
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=69.62 E-value=1.7 Score=34.77 Aligned_cols=16 Identities=31% Similarity=0.248 Sum_probs=13.7
Q ss_pred CCcEEEEcCCCchHHH
Q psy7786 7 SRDIIGIAFTGSGKTL 22 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~ 22 (252)
+.-+++.+++|||||.
T Consensus 33 ~~livl~G~sGsGKST 48 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTS 48 (287)
T ss_dssp CEEEEEECCTTSCTHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4568999999999994
No 394
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=69.55 E-value=2.4 Score=33.49 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=16.5
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.=+.+.+|+|||||..
T Consensus 43 i~~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 45677888999999999954
No 395
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=69.48 E-value=2.2 Score=32.30 Aligned_cols=17 Identities=29% Similarity=0.344 Sum_probs=14.8
Q ss_pred CCCcEEEEcCCCchHHH
Q psy7786 6 NSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~ 22 (252)
.+..+++.++.|||||.
T Consensus 3 ~~~~I~l~G~~GsGKsT 19 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGT 19 (220)
T ss_dssp CCCEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 46779999999999994
No 396
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=69.33 E-value=2.1 Score=31.48 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.3
Q ss_pred cCCCcEEEEcCCCchHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~ 22 (252)
..++-+++.++.|||||.
T Consensus 7 ~~~~~I~l~G~~GsGKsT 24 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGT 24 (196)
T ss_dssp TTSCEEEEEECTTSSHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 356779999999999995
No 397
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=69.25 E-value=2.4 Score=30.19 Aligned_cols=14 Identities=36% Similarity=0.423 Sum_probs=11.9
Q ss_pred EEEEcCCCchHHHH
Q psy7786 10 IIGIAFTGSGKTLV 23 (252)
Q Consensus 10 ~~~~a~tgsGKT~a 23 (252)
.++.+|+|||||..
T Consensus 26 ~~I~G~NGsGKSti 39 (149)
T 1f2t_A 26 NLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999954
No 398
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=69.23 E-value=2.6 Score=33.54 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=16.1
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.=+.+.+|+|||||..
T Consensus 31 i~~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp EETTSEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34677788999999999943
No 399
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=69.13 E-value=2.5 Score=33.20 Aligned_cols=20 Identities=25% Similarity=0.162 Sum_probs=16.4
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.=+.+.+|+|||||..
T Consensus 38 i~~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHH
T ss_pred EcCCcEEEEECCCCCCHHHH
Confidence 44677788999999999943
No 400
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.05 E-value=2.2 Score=36.39 Aligned_cols=17 Identities=35% Similarity=0.583 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCchHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a 23 (252)
.+-+++.+|+|||||+.
T Consensus 216 prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLL 232 (437)
T ss_dssp CSEEEEESSTTTTHHHH
T ss_pred CCCCceECCCCchHHHH
Confidence 36799999999999953
No 401
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=69.02 E-value=2.5 Score=34.57 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=13.9
Q ss_pred CcEEEEcCCCchHHHH
Q psy7786 8 RDIIGIAFTGSGKTLV 23 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a 23 (252)
..+++.+|+|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 5799999999999954
No 402
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=68.77 E-value=14 Score=31.62 Aligned_cols=54 Identities=17% Similarity=0.202 Sum_probs=29.9
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEc--CcHHHHHHHHHHHHHHHHhCC
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIIC--PSRELARQTHDIIQYYCAALP 74 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~--ptreLa~q~~~~~~~l~~~~~ 74 (252)
++=+++.+++|+|||.+.. -+...+.. .+-+++++. |-|.-| .+.++.+++..+
T Consensus 100 p~vIlivG~~G~GKTTt~~-kLA~~l~~----------~G~kVllv~~D~~R~aa---~eqL~~~~~~~g 155 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVA-KLARYFQK----------RGYKVGVVCSDTWRPGA---YHQLRQLLDRYH 155 (443)
T ss_dssp SEEEEEECCTTSSHHHHHH-HHHHHHHT----------TTCCEEEEECCCSSTHH---HHHHHHHHGGGT
T ss_pred CeEEEEECcCCCCHHHHHH-HHHHHHHH----------CCCeEEEEeCCCcchhH---HHHHHHHHHhcC
Confidence 3457889999999995432 22222222 134565555 444433 334555666666
No 403
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=68.76 E-value=2.6 Score=33.29 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=16.4
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.=+.+.+|+|||||..
T Consensus 47 i~~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEEcCCCCcHHHH
Confidence 45677788999999999943
No 404
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=68.71 E-value=2.4 Score=33.26 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=16.2
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.=+.+.+|+|||||..
T Consensus 28 i~~Ge~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTL 47 (253)
T ss_dssp EETTCEEEEECCSSSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 34677788999999999953
No 405
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=68.53 E-value=2.9 Score=32.69 Aligned_cols=20 Identities=15% Similarity=0.144 Sum_probs=16.5
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.=+.+.+|+|||||.-
T Consensus 26 i~~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34677788999999999954
No 406
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=68.47 E-value=1.9 Score=31.66 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCchHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a 23 (252)
++-+++.+++|||||..
T Consensus 3 ~~~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQ 19 (196)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45689999999999953
No 407
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=68.41 E-value=2.2 Score=38.03 Aligned_cols=20 Identities=25% Similarity=0.504 Sum_probs=17.1
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|+.+++.+|+|+|||..
T Consensus 57 i~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHH
T ss_pred ccCCCEEEEEeCCCCCHHHH
Confidence 45788999999999999943
No 408
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=68.38 E-value=3.1 Score=34.22 Aligned_cols=24 Identities=13% Similarity=0.001 Sum_probs=17.5
Q ss_pred cCCCcEEEEcCCCchHHHHhHHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLVFVLPIL 29 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~~lp~~ 29 (252)
..|.-+++.+++||||| +|++-+.
T Consensus 120 ~~G~i~~I~G~~GsGKT-tla~~la 143 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKT-QLSHTLC 143 (343)
T ss_dssp CSSEEEEEECCTTCTHH-HHHHHHH
T ss_pred CCCeEEEEECCCCCCHH-HHHHHHH
Confidence 45677899999999999 3444333
No 409
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=68.33 E-value=2.4 Score=30.72 Aligned_cols=15 Identities=47% Similarity=0.811 Sum_probs=13.0
Q ss_pred CcEEEEcCCCchHHH
Q psy7786 8 RDIIGIAFTGSGKTL 22 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~ 22 (252)
+.+++.+++|||||.
T Consensus 5 ~~i~i~G~~GsGKsT 19 (175)
T 1via_A 5 KNIVFIGFMGSGKST 19 (175)
T ss_dssp CCEEEECCTTSCHHH
T ss_pred CEEEEEcCCCCCHHH
Confidence 368999999999994
No 410
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=68.22 E-value=2.6 Score=32.01 Aligned_cols=17 Identities=18% Similarity=0.171 Sum_probs=14.6
Q ss_pred CCCcEEEEcCCCchHHH
Q psy7786 6 NSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~ 22 (252)
.++-+++.++.|||||.
T Consensus 4 ~~~~I~l~G~~GsGKsT 20 (222)
T 1zak_A 4 DPLKVMISGAPASGKGT 20 (222)
T ss_dssp CSCCEEEEESTTSSHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 45679999999999994
No 411
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=68.21 E-value=3.1 Score=32.96 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=16.3
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.=+.+.+|+|||||..
T Consensus 42 i~~Ge~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTV 61 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 34677788999999999943
No 412
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=68.02 E-value=3 Score=32.66 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=16.4
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.-+.+.+|+|||||.-
T Consensus 23 i~~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp EETTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH
Confidence 45677788999999999943
No 413
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=67.93 E-value=3 Score=33.30 Aligned_cols=14 Identities=29% Similarity=0.358 Sum_probs=12.8
Q ss_pred cEEEEcCCCchHHH
Q psy7786 9 DIIGIAFTGSGKTL 22 (252)
Q Consensus 9 d~~~~a~tgsGKT~ 22 (252)
++++.+|+|+|||.
T Consensus 40 ~~ll~G~~G~GKt~ 53 (319)
T 2chq_A 40 HLLFSGPPGTGKTA 53 (319)
T ss_dssp CEEEESSSSSSHHH
T ss_pred eEEEECcCCcCHHH
Confidence 59999999999994
No 414
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=67.83 E-value=3.2 Score=32.76 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=16.3
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.=+.+.+|+|||||..
T Consensus 30 i~~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH
Confidence 34677788999999999953
No 415
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=67.78 E-value=3 Score=34.08 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=13.2
Q ss_pred cEEEEcCCCchHHHH
Q psy7786 9 DIIGIAFTGSGKTLV 23 (252)
Q Consensus 9 d~~~~a~tgsGKT~a 23 (252)
++++.+|+|+|||..
T Consensus 38 ~~ll~Gp~G~GKTtl 52 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTR 52 (354)
T ss_dssp CEEEECSTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 599999999999954
No 416
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=67.71 E-value=2.3 Score=32.39 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=14.2
Q ss_pred CCCcEEEEcCCCchHHH
Q psy7786 6 NSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~ 22 (252)
.+.-+++.+++|||||.
T Consensus 6 ~~~~I~l~G~~GsGKsT 22 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGT 22 (227)
T ss_dssp -CCEEEEEECTTSSHHH
T ss_pred cCcEEEEECCCCCCHHH
Confidence 45679999999999995
No 417
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=67.61 E-value=2.7 Score=31.37 Aligned_cols=19 Identities=21% Similarity=0.228 Sum_probs=16.0
Q ss_pred ccCCCcEEEEcCCCchHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~ 22 (252)
...|+-+++.++.|||||.
T Consensus 7 ~~~~~~I~l~G~~GsGKST 25 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKST 25 (212)
T ss_dssp CBCSCEEEEEESTTSSHHH
T ss_pred hhcCCEEEEEcCCCCCHHH
Confidence 3457789999999999994
No 418
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=67.58 E-value=2.2 Score=31.85 Aligned_cols=17 Identities=29% Similarity=0.198 Sum_probs=14.6
Q ss_pred CCCcEEEEcCCCchHHH
Q psy7786 6 NSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~ 22 (252)
.|+-+++.++.|||||.
T Consensus 3 ~~~~I~i~G~~GsGKsT 19 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSS 19 (213)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCeEEEEEcCCCCCHHH
Confidence 46678999999999994
No 419
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=67.54 E-value=2.1 Score=31.42 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=11.6
Q ss_pred EEEEcCCCchHHHH
Q psy7786 10 IIGIAFTGSGKTLV 23 (252)
Q Consensus 10 ~~~~a~tgsGKT~a 23 (252)
+.+.+++|||||..
T Consensus 5 v~IvG~SGsGKSTL 18 (171)
T 2f1r_A 5 LSIVGTSDSGKTTL 18 (171)
T ss_dssp EEEEESCHHHHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56889999999944
No 420
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=67.33 E-value=2.3 Score=31.18 Aligned_cols=14 Identities=29% Similarity=0.216 Sum_probs=12.2
Q ss_pred cEEEEcCCCchHHH
Q psy7786 9 DIIGIAFTGSGKTL 22 (252)
Q Consensus 9 d~~~~a~tgsGKT~ 22 (252)
-+++.++.|||||.
T Consensus 3 ~I~i~G~~GsGKsT 16 (194)
T 1nks_A 3 IGIVTGIPGVGKST 16 (194)
T ss_dssp EEEEEECTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 37899999999994
No 421
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=67.28 E-value=2.6 Score=36.35 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=15.1
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
...++++.+|+|+|||..
T Consensus 200 ~~~~~LL~G~pG~GKT~l 217 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAI 217 (468)
T ss_dssp SSCEEEEESCTTTTTHHH
T ss_pred CCCCeEEECCCCCCHHHH
Confidence 456899999999999953
No 422
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=67.04 E-value=2.2 Score=31.31 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=15.5
Q ss_pred cCCCcEEEEcCCCchHHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a 23 (252)
..|.-+++.++.|||||..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp SCCEEEEEECCTTSSHHHH
T ss_pred CCCcEEEEEcCCCCCHHHH
Confidence 3566789999999999953
No 423
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=66.85 E-value=3 Score=37.22 Aligned_cols=14 Identities=29% Similarity=0.347 Sum_probs=13.3
Q ss_pred cEEEEcCCCchHHH
Q psy7786 9 DIIGIAFTGSGKTL 22 (252)
Q Consensus 9 d~~~~a~tgsGKT~ 22 (252)
++++.+|+|+|||.
T Consensus 329 ~vLL~GppGtGKT~ 342 (595)
T 3f9v_A 329 HILIIGDPGTAKSQ 342 (595)
T ss_dssp CEEEEESSCCTHHH
T ss_pred ceEEECCCchHHHH
Confidence 89999999999995
No 424
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=66.77 E-value=3.2 Score=33.41 Aligned_cols=19 Identities=37% Similarity=0.490 Sum_probs=15.7
Q ss_pred CCCcEEEEcCCCchHHHHh
Q psy7786 6 NSRDIIGIAFTGSGKTLVF 24 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~ 24 (252)
.|+-+++.+++|+|||...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp CSSEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 5677899999999999543
No 425
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=66.76 E-value=3.3 Score=33.46 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=15.2
Q ss_pred CCCcEEEEcCCCchHHHHh
Q psy7786 6 NSRDIIGIAFTGSGKTLVF 24 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~ 24 (252)
.|.-+.+.+|+|||||...
T Consensus 101 ~g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSSEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 4667888999999999543
No 426
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=66.74 E-value=2.6 Score=34.04 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=16.1
Q ss_pred cCCCcEEEEcCCCchHHHHh
Q psy7786 5 RNSRDIIGIAFTGSGKTLVF 24 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~ 24 (252)
..|.=+.+.+++|+|||...
T Consensus 98 ~~g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHH
Confidence 35667889999999999654
No 427
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=66.73 E-value=2.7 Score=36.98 Aligned_cols=18 Identities=22% Similarity=0.139 Sum_probs=15.7
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
.|..+++.+|+|+|||..
T Consensus 107 ~g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSL 124 (543)
T ss_dssp CSCEEEEESSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578899999999999943
No 428
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=66.73 E-value=2.5 Score=31.84 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=12.2
Q ss_pred cEEEEcCCCchHHH
Q psy7786 9 DIIGIAFTGSGKTL 22 (252)
Q Consensus 9 d~~~~a~tgsGKT~ 22 (252)
.+++.+++|||||.
T Consensus 2 ~I~l~G~~GsGKsT 15 (216)
T 3fb4_A 2 NIVLMGLPGAGKGT 15 (216)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 37899999999994
No 429
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=66.69 E-value=2.7 Score=34.21 Aligned_cols=20 Identities=15% Similarity=0.165 Sum_probs=16.3
Q ss_pred cCCCcEEEEcCCCchHH-HHh
Q psy7786 5 RNSRDIIGIAFTGSGKT-LVF 24 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT-~a~ 24 (252)
..|+-+++.+++|+||+ +|.
T Consensus 145 ~~g~gvli~G~sG~GKStlal 165 (312)
T 1knx_A 145 VFGVGVLLTGRSGIGKSECAL 165 (312)
T ss_dssp ETTEEEEEEESSSSSHHHHHH
T ss_pred ECCEEEEEEcCCCCCHHHHHH
Confidence 45778999999999996 443
No 430
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=66.55 E-value=2.9 Score=30.16 Aligned_cols=18 Identities=22% Similarity=0.104 Sum_probs=14.7
Q ss_pred cCCCcEEEEcCCCchHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~ 22 (252)
..|.=+.+.+|.|+|||.
T Consensus 31 ~~Ge~v~L~G~nGaGKTT 48 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT 48 (158)
T ss_dssp SSCEEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 456667899999999993
No 431
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=66.36 E-value=2.6 Score=36.16 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=13.3
Q ss_pred cEEEEcCCCchHHHH
Q psy7786 9 DIIGIAFTGSGKTLV 23 (252)
Q Consensus 9 d~~~~a~tgsGKT~a 23 (252)
.+++.+|+|+|||..
T Consensus 52 ~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 52 SMILWGPPGTGKTTL 66 (447)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCcHHHH
Confidence 689999999999953
No 432
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=66.22 E-value=2.5 Score=32.00 Aligned_cols=16 Identities=25% Similarity=0.121 Sum_probs=13.4
Q ss_pred CCcEEEEcCCCchHHH
Q psy7786 7 SRDIIGIAFTGSGKTL 22 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~ 22 (252)
+.-+.+.+++|||||.
T Consensus 5 ~~~i~i~G~~GsGKST 20 (227)
T 1cke_A 5 APVITIDGPSGAGKGT 20 (227)
T ss_dssp SCEEEEECCTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 3468899999999994
No 433
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=66.13 E-value=2.7 Score=36.72 Aligned_cols=16 Identities=31% Similarity=0.287 Sum_probs=14.2
Q ss_pred CcEEEEcCCCchHHHH
Q psy7786 8 RDIIGIAFTGSGKTLV 23 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a 23 (252)
+.+++.+|+|+|||..
T Consensus 78 ~~lLL~GppGtGKTtl 93 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTA 93 (516)
T ss_dssp SEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 6799999999999954
No 434
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=65.68 E-value=3.4 Score=30.10 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=13.0
Q ss_pred CcEEEEcCCCchHHH
Q psy7786 8 RDIIGIAFTGSGKTL 22 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~ 22 (252)
.-+++.+++|||||.
T Consensus 3 ~~I~l~G~~GsGKsT 17 (184)
T 2iyv_A 3 PKAVLVGLPGSGKST 17 (184)
T ss_dssp CSEEEECSTTSSHHH
T ss_pred CeEEEECCCCCCHHH
Confidence 358899999999995
No 435
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=65.55 E-value=2.9 Score=31.26 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=15.5
Q ss_pred cCCCcEEEEcCCCchHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~ 22 (252)
..|+-+++.++.|||||.
T Consensus 7 ~~~~~I~l~G~~GsGKsT 24 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKST 24 (215)
T ss_dssp CCCCEEEEEESTTSSHHH
T ss_pred cCCcEEEEECCCCCCHHH
Confidence 357789999999999994
No 436
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=65.50 E-value=12 Score=27.09 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=33.7
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCcccCcchhhhh
Q psy7786 46 GPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIK 96 (252)
Q Consensus 46 ~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~l~ 96 (252)
.-++||.+++++-+..+.+.++.. + +.+..++|+.+..++.+.++
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~--~~~~~~~g~~~~~~R~~~~~ 78 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----G--HQVSLLSGELTVEQRASIIQ 78 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----T--CCEEEECSSCCHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----C--CcEEEEeCCCCHHHHHHHHH
Confidence 457999999999998888776642 4 67888999977665544443
No 437
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=65.44 E-value=3.2 Score=30.87 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=14.2
Q ss_pred CCCcEEEEcCCCchHHH
Q psy7786 6 NSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~ 22 (252)
.+.-+++.++.|||||.
T Consensus 19 ~~~~I~l~G~~GsGKST 35 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGT 35 (201)
T ss_dssp SCCEEEEECCTTSSHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 34568999999999995
No 438
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=65.44 E-value=3 Score=32.27 Aligned_cols=17 Identities=29% Similarity=0.245 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCchHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a 23 (252)
+.-+++.+++|||||..
T Consensus 27 ~~~i~l~G~~GsGKSTl 43 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTV 43 (246)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45689999999999953
No 439
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=65.32 E-value=3 Score=35.56 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCchHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a 23 (252)
+..+++.+|+|+|||..
T Consensus 130 ~~~lll~Gp~G~GKTtL 146 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHL 146 (440)
T ss_dssp SCCEEEECSSSSSHHHH
T ss_pred CCeEEEECCCCCCHHHH
Confidence 46899999999999953
No 440
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=65.31 E-value=3.6 Score=32.81 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=16.3
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.=+.+.+|+|||||.-
T Consensus 44 i~~Ge~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTL 63 (279)
T ss_dssp EETTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH
Confidence 34677788999999999943
No 441
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=65.14 E-value=2.7 Score=36.35 Aligned_cols=16 Identities=38% Similarity=0.652 Sum_probs=14.1
Q ss_pred CcEEEEcCCCchHHHH
Q psy7786 8 RDIIGIAFTGSGKTLV 23 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~a 23 (252)
+.+++.+|+|||||+.
T Consensus 50 ~gvLL~GppGtGKT~L 65 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLL 65 (476)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5699999999999964
No 442
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=64.85 E-value=3.1 Score=31.87 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=14.6
Q ss_pred CCCcEEEEcCCCchHHH
Q psy7786 6 NSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~ 22 (252)
.+..+++.++.|||||.
T Consensus 15 ~~~~I~l~G~~GsGKsT 31 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGT 31 (233)
T ss_dssp CCCEEEEECCTTSSHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 45679999999999994
No 443
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=64.73 E-value=3.9 Score=32.83 Aligned_cols=20 Identities=25% Similarity=0.263 Sum_probs=16.6
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.-+.+.+|+|||||..
T Consensus 61 i~~Ge~~~i~G~NGsGKSTL 80 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSL 80 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH
Confidence 45677889999999999954
No 444
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=64.63 E-value=3.5 Score=29.62 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=13.0
Q ss_pred CcEEEEcCCCchHHH
Q psy7786 8 RDIIGIAFTGSGKTL 22 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~ 22 (252)
+-+++.++.|||||.
T Consensus 3 ~~I~l~G~~GsGKsT 17 (173)
T 1e6c_A 3 EPIFMVGARGCGMTT 17 (173)
T ss_dssp CCEEEESCTTSSHHH
T ss_pred ceEEEECCCCCCHHH
Confidence 458899999999994
No 445
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=64.50 E-value=3.1 Score=31.31 Aligned_cols=14 Identities=21% Similarity=0.570 Sum_probs=12.3
Q ss_pred cEEEEcCCCchHHH
Q psy7786 9 DIIGIAFTGSGKTL 22 (252)
Q Consensus 9 d~~~~a~tgsGKT~ 22 (252)
.+++.++.|||||.
T Consensus 2 ~I~l~G~~GsGKsT 15 (216)
T 3dl0_A 2 NLVLMGLPGAGKGT 15 (216)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999994
No 446
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=64.18 E-value=3 Score=38.68 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=16.7
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..++.+++.+|+|||||..
T Consensus 235 i~~~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHH
T ss_pred CCCCCeEEEECcCCCCHHHH
Confidence 34678899999999999953
No 447
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=64.14 E-value=2.2 Score=44.77 Aligned_cols=20 Identities=40% Similarity=0.541 Sum_probs=17.2
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|+.+++.+|||||||..
T Consensus 1264 l~~~~~vLL~GPpGtGKT~l 1283 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMI 1283 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHH
T ss_pred HHCCCeEEEECCCCCCHHHH
Confidence 34689999999999999964
No 448
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=64.14 E-value=2.3 Score=33.21 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=14.8
Q ss_pred cCCCcEEEEcCCCchHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~ 22 (252)
..+.-+++.+++|||||.
T Consensus 30 ~~~~~i~l~G~~GsGKST 47 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTT 47 (253)
T ss_dssp SSCEEEEEESCGGGTTHH
T ss_pred cCCeEEEEECCCCCCHHH
Confidence 345568999999999994
No 449
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=64.11 E-value=3.6 Score=32.09 Aligned_cols=17 Identities=24% Similarity=0.083 Sum_probs=14.3
Q ss_pred CCCcEEEEcCCCchHHH
Q psy7786 6 NSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~ 22 (252)
.|.-+.+.+++|||||.
T Consensus 26 ~g~~I~I~G~~GsGKST 42 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGT 42 (252)
T ss_dssp TSCEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 45668999999999994
No 450
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=64.07 E-value=3 Score=34.00 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=12.5
Q ss_pred EEEEcCCCchHHHH
Q psy7786 10 IIGIAFTGSGKTLV 23 (252)
Q Consensus 10 ~~~~a~tgsGKT~a 23 (252)
+++.+|+|+|||..
T Consensus 49 ~ll~Gp~G~GKTtl 62 (340)
T 1sxj_C 49 LLFYGPPGTGKTST 62 (340)
T ss_dssp EEEECSSSSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 89999999999943
No 451
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=64.02 E-value=3 Score=30.72 Aligned_cols=16 Identities=38% Similarity=0.316 Sum_probs=13.7
Q ss_pred CCcEEEEcCCCchHHH
Q psy7786 7 SRDIIGIAFTGSGKTL 22 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~ 22 (252)
++-+++.+++|||||.
T Consensus 12 ~~~I~l~G~~GsGKsT 27 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGT 27 (199)
T ss_dssp SCEEEEEECTTSSHHH
T ss_pred CCEEEEECCCCCCHHH
Confidence 4568999999999994
No 452
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=63.96 E-value=3.3 Score=31.40 Aligned_cols=20 Identities=30% Similarity=0.476 Sum_probs=15.8
Q ss_pred cCCCcEEEEcCCCchHHHHh
Q psy7786 5 RNSRDIIGIAFTGSGKTLVF 24 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~a~ 24 (252)
..|.=+.+.+|+|||||..+
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35667889999999999543
No 453
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=63.95 E-value=3.4 Score=33.08 Aligned_cols=15 Identities=27% Similarity=0.302 Sum_probs=13.3
Q ss_pred cEEEEcCCCchHHHH
Q psy7786 9 DIIGIAFTGSGKTLV 23 (252)
Q Consensus 9 d~~~~a~tgsGKT~a 23 (252)
++++.+|+|+|||..
T Consensus 48 ~~ll~G~~G~GKT~l 62 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTA 62 (327)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred eEEEECcCCCCHHHH
Confidence 699999999999953
No 454
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=63.78 E-value=2.9 Score=31.10 Aligned_cols=14 Identities=29% Similarity=0.185 Sum_probs=12.2
Q ss_pred cEEEEcCCCchHHH
Q psy7786 9 DIIGIAFTGSGKTL 22 (252)
Q Consensus 9 d~~~~a~tgsGKT~ 22 (252)
-+.+.+++|||||.
T Consensus 3 ~i~i~G~~GsGKST 16 (204)
T 2if2_A 3 RIGLTGNIGCGKST 16 (204)
T ss_dssp EEEEEECTTSSHHH
T ss_pred EEEEECCCCcCHHH
Confidence 47889999999994
No 455
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=63.77 E-value=8.2 Score=28.97 Aligned_cols=38 Identities=13% Similarity=-0.087 Sum_probs=24.3
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCc
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPS 55 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~pt 55 (252)
|+=.++.++.|||||.. ++=.+.+.... +-+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~-Ll~~i~n~~~~----------~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTE-LMRRVRRFQIA----------QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHH-HHHHHHHHHHT----------TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHH-HHHHHHHHHHc----------CCeEEEEccc
Confidence 44467899999999943 33333333221 3468998877
No 456
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=63.75 E-value=3.2 Score=30.33 Aligned_cols=15 Identities=27% Similarity=0.282 Sum_probs=12.9
Q ss_pred CcEEEEcCCCchHHH
Q psy7786 8 RDIIGIAFTGSGKTL 22 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~ 22 (252)
+-+++.++.|||||.
T Consensus 7 ~~I~l~G~~GsGKsT 21 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGT 21 (194)
T ss_dssp EEEEEEESTTSSHHH
T ss_pred cEEEEECCCCCCHHH
Confidence 358899999999995
No 457
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=63.63 E-value=16 Score=25.96 Aligned_cols=45 Identities=11% Similarity=0.228 Sum_probs=33.3
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCcccCcchhhhh
Q psy7786 46 GPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIK 96 (252)
Q Consensus 46 ~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~l~ 96 (252)
+.++||.+++++-+..+.+.++.. + +.+..++|+.+..++.+.++
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~--~~~~~~~~~~~~~~r~~~~~ 74 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----K--FTVSAIYSDLPQQERDTIMK 74 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----T--CCEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----C--CCEEEEECCCCHHHHHHHHH
Confidence 346999999999998888777653 4 67888899877665544443
No 458
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=63.62 E-value=3.3 Score=31.18 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=15.3
Q ss_pred cCCCcEEEEcCCCchHHH
Q psy7786 5 RNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 5 ~~g~d~~~~a~tgsGKT~ 22 (252)
..|+-+++.+++|||||.
T Consensus 23 ~~~~~i~~~G~~GsGKsT 40 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKST 40 (211)
T ss_dssp SSCEEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 456778999999999994
No 459
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=63.58 E-value=3 Score=30.80 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=12.1
Q ss_pred cEEEEcCCCchHHH
Q psy7786 9 DIIGIAFTGSGKTL 22 (252)
Q Consensus 9 d~~~~a~tgsGKT~ 22 (252)
-+++.++.|||||.
T Consensus 2 ~I~i~G~~GsGKsT 15 (205)
T 2jaq_A 2 KIAIFGTVGAGKST 15 (205)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCccCHHH
Confidence 37889999999994
No 460
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=63.46 E-value=3.4 Score=30.87 Aligned_cols=17 Identities=24% Similarity=0.055 Sum_probs=13.7
Q ss_pred CCcEEEEcCCCchHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a 23 (252)
|.=+.+.+++|||||..
T Consensus 22 ~~~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTL 38 (201)
T ss_dssp SEEEEEEECTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44578899999999953
No 461
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=63.32 E-value=3.2 Score=34.48 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=12.1
Q ss_pred EEEEcCCCchHHHH
Q psy7786 10 IIGIAFTGSGKTLV 23 (252)
Q Consensus 10 ~~~~a~tgsGKT~a 23 (252)
.++.++||+|||..
T Consensus 28 ~vi~G~NGaGKT~i 41 (371)
T 3auy_A 28 VAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 57899999999964
No 462
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=63.29 E-value=15 Score=33.09 Aligned_cols=66 Identities=21% Similarity=0.283 Sum_probs=42.9
Q ss_pred CChHHHHhhhhhhh----cCC-cEEEEccCCCchhHHhHHHHHHHHHhhhccCCCCCCCCcEEEEEcCcHHHHHHHHHHH
Q psy7786 166 KPTPIQVQGIPAAL----SGR-DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 240 (252)
Q Consensus 166 ~p~~iQ~~~~p~~~----~~~-~~~~~~~~g~gKt~~~~~~~l~~i~~~~~~~~~~~~~~~~~LIf~~tr~~a~~i~~~l 240 (252)
.|+.-|...+.... .|. ...+...+|+||++.... ++. +. ...+||++++..+|.++++.|
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~-~~~----~~---------~~~~lvv~~~~~~A~~l~~el 77 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSN-LIK----EV---------NKPTLVIAHNKTLAGQLYSEF 77 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHH----HH---------CCCEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHH-HHH----Hh---------CCCEEEEECCHHHHHHHHHHH
Confidence 35555554443322 332 466778899999765322 121 11 113899999999999999999
Q ss_pred HHHHh
Q psy7786 241 QYYCA 245 (252)
Q Consensus 241 ~~l~~ 245 (252)
+.+..
T Consensus 78 ~~~~~ 82 (661)
T 2d7d_A 78 KEFFP 82 (661)
T ss_dssp HHHCT
T ss_pred HHHcC
Confidence 98843
No 463
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=63.23 E-value=3.4 Score=30.84 Aligned_cols=14 Identities=36% Similarity=0.105 Sum_probs=12.0
Q ss_pred cEEEEcCCCchHHH
Q psy7786 9 DIIGIAFTGSGKTL 22 (252)
Q Consensus 9 d~~~~a~tgsGKT~ 22 (252)
-+.+.++.|||||.
T Consensus 4 ~i~l~G~~GsGKST 17 (206)
T 1jjv_A 4 IVGLTGGIGSGKTT 17 (206)
T ss_dssp EEEEECSTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 36789999999995
No 464
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=62.98 E-value=3.2 Score=30.82 Aligned_cols=14 Identities=29% Similarity=0.290 Sum_probs=12.4
Q ss_pred cEEEEcCCCchHHH
Q psy7786 9 DIIGIAFTGSGKTL 22 (252)
Q Consensus 9 d~~~~a~tgsGKT~ 22 (252)
-+++.++.|||||.
T Consensus 17 ~I~l~G~~GsGKsT 30 (203)
T 1ukz_A 17 VIFVLGGPGAGKGT 30 (203)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999994
No 465
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=62.78 E-value=3.6 Score=32.59 Aligned_cols=17 Identities=24% Similarity=0.094 Sum_probs=14.4
Q ss_pred cEEEEcCCCchHHHHhH
Q psy7786 9 DIIGIAFTGSGKTLVFV 25 (252)
Q Consensus 9 d~~~~a~tgsGKT~a~~ 25 (252)
.+++.+|.|||||+.+.
T Consensus 106 ~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAE 122 (267)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999996554
No 466
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=62.76 E-value=3.6 Score=29.50 Aligned_cols=15 Identities=40% Similarity=0.718 Sum_probs=13.3
Q ss_pred CcEEEEcCCCchHHH
Q psy7786 8 RDIIGIAFTGSGKTL 22 (252)
Q Consensus 8 ~d~~~~a~tgsGKT~ 22 (252)
.++++.+..|||||.
T Consensus 8 ~~i~l~G~~GsGKST 22 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSS 22 (168)
T ss_dssp CEEEEESCTTSSHHH
T ss_pred ceEEEECCCCCCHHH
Confidence 478999999999995
No 467
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=62.46 E-value=3.4 Score=31.26 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=14.4
Q ss_pred CCCcEEEEcCCCchHHH
Q psy7786 6 NSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~ 22 (252)
.+..+++.++.|||||.
T Consensus 4 ~~~~I~l~G~~GsGKsT 20 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGT 20 (217)
T ss_dssp GCCEEEEEECTTSSHHH
T ss_pred CceEEEEECCCCCCHHH
Confidence 35678999999999994
No 468
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=62.44 E-value=4.4 Score=31.98 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCchHHHHh
Q psy7786 7 SRDIIGIAFTGSGKTLVF 24 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~ 24 (252)
|.-+.+.+|+|||||..+
T Consensus 30 Ge~~~i~G~NGsGKSTLl 47 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLL 47 (263)
T ss_dssp SSEEEEECCTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 777889999999999543
No 469
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=62.36 E-value=3.8 Score=34.28 Aligned_cols=19 Identities=26% Similarity=0.078 Sum_probs=16.1
Q ss_pred ccCCCcEEEEcCCCchHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~ 22 (252)
+..|+-+++.+|+|||||.
T Consensus 166 i~~~~~i~l~G~~GsGKST 184 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTT 184 (377)
T ss_dssp CTTCCEEEEECSTTSSHHH
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 4467889999999999994
No 470
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=62.36 E-value=26 Score=35.99 Aligned_cols=20 Identities=25% Similarity=0.092 Sum_probs=17.1
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+-.|+.+++.+|+|+|||..
T Consensus 1424 i~~g~~vll~GppGtGKT~L 1443 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTL 1443 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHH
T ss_pred ccCCeEEEEECCCCCCHHHH
Confidence 34689999999999999953
No 471
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=62.10 E-value=17 Score=26.15 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=33.2
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCcccCcchhhhh
Q psy7786 46 GPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIK 96 (252)
Q Consensus 46 ~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~l~ 96 (252)
+-++||.+++++-+..+.+.++.. + +.+..++|+.+..++.+.++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~--~~~~~~hg~~~~~~r~~~~~ 75 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----N--FPAIAIHRGMPQEERLSRYQ 75 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----T--CCEEEECTTSCHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----C--CCEEEEECCCCHHHHHHHHH
Confidence 346999999999998888877653 4 67788899876655544433
No 472
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=61.87 E-value=2.9 Score=44.59 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=16.9
Q ss_pred ccCCCcEEEEcCCCchHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~ 22 (252)
+..|+.+++++|||||||.
T Consensus 1301 l~~~~pvLL~GptGtGKT~ 1319 (3245)
T 3vkg_A 1301 LSEHRPLILCGPPGSGKTM 1319 (3245)
T ss_dssp HHTTCCCEEESSTTSSHHH
T ss_pred HHCCCcEEEECCCCCCHHH
Confidence 4578999999999999994
No 473
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=61.87 E-value=11 Score=28.63 Aligned_cols=40 Identities=10% Similarity=-0.064 Sum_probs=23.6
Q ss_pred CCcEEEEcCCCchHHHHhHHHHHHHHHHhhcCCCCCCCCCcEEEEEcCcHH
Q psy7786 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRE 57 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a~~lp~~~~~~~~~~~~~~~~~~~~~~lil~ptre 57 (252)
|+=.++.++-|||||.+. +-.+.+... .+-+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~l-L~~a~r~~~----------~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEEL-IRRVRRTQF----------AKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHH-HHHHHHHHH----------TTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHH-HHHHHHHHH----------CCCEEEEEEeccC
Confidence 333446777799999554 333433332 2456999988874
No 474
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=61.62 E-value=3.8 Score=29.27 Aligned_cols=14 Identities=43% Similarity=0.470 Sum_probs=12.2
Q ss_pred cEEEEcCCCchHHH
Q psy7786 9 DIIGIAFTGSGKTL 22 (252)
Q Consensus 9 d~~~~a~tgsGKT~ 22 (252)
.+++.++.|||||.
T Consensus 2 ~I~l~G~~GsGKsT 15 (168)
T 2pt5_A 2 RIYLIGFMCSGKST 15 (168)
T ss_dssp EEEEESCTTSCHHH
T ss_pred eEEEECCCCCCHHH
Confidence 47899999999994
No 475
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=61.46 E-value=3.5 Score=37.79 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=14.9
Q ss_pred CCCcEEEEcCCCchHHH
Q psy7786 6 NSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~ 22 (252)
...++++.+|+|+|||.
T Consensus 200 ~~~~vLL~G~pGtGKT~ 216 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTA 216 (758)
T ss_dssp SSCEEEEESCTTTTTHH
T ss_pred CCCCeEEECCCCCCHHH
Confidence 45689999999999995
No 476
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=61.36 E-value=3 Score=30.27 Aligned_cols=18 Identities=33% Similarity=0.062 Sum_probs=10.6
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
.++-+++.++.|||||..
T Consensus 4 ~~~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHT 21 (183)
T ss_dssp -CCEEEEECCC----CHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 466789999999999953
No 477
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=61.29 E-value=3.9 Score=30.38 Aligned_cols=19 Identities=11% Similarity=0.086 Sum_probs=15.7
Q ss_pred ccCCCcEEEEcCCCchHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~ 22 (252)
+..|.-+.+.+++|+|||.
T Consensus 23 ~~~~~~v~lvG~~g~GKST 41 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSS 41 (210)
T ss_dssp CSCSEEEEEEECTTSSHHH
T ss_pred CCCCcEEEEECCCCCCHHH
Confidence 3456679999999999993
No 478
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=61.23 E-value=4.2 Score=33.76 Aligned_cols=20 Identities=25% Similarity=0.306 Sum_probs=16.1
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.=+.+.+|+|||||..
T Consensus 27 i~~Ge~~~llGpsGsGKSTL 46 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTL 46 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHH
T ss_pred EcCCCEEEEECCCCchHHHH
Confidence 34677788999999999943
No 479
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=61.22 E-value=3.6 Score=30.21 Aligned_cols=13 Identities=38% Similarity=0.406 Sum_probs=11.6
Q ss_pred EEEEcCCCchHHH
Q psy7786 10 IIGIAFTGSGKTL 22 (252)
Q Consensus 10 ~~~~a~tgsGKT~ 22 (252)
+++.++.|||||.
T Consensus 3 I~l~G~~GsGKsT 15 (197)
T 2z0h_A 3 ITFEGIDGSGKST 15 (197)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 6789999999994
No 480
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=61.06 E-value=17 Score=26.73 Aligned_cols=44 Identities=16% Similarity=0.220 Sum_probs=33.6
Q ss_pred cEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCcccCcchhhhh
Q psy7786 47 PYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIK 96 (252)
Q Consensus 47 ~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~l~ 96 (252)
.++||.+++++-+..+.+.++.. + +.+..++|+.+..++.+.++
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g--~~~~~lhg~~~~~~R~~~l~ 98 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----G--VEAVAIHGGKDQEERTKAIE 98 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----T--CCEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----C--CcEEEEeCCCCHHHHHHHHH
Confidence 46999999999999888877654 4 67888999977665544443
No 481
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=61.05 E-value=3.6 Score=30.07 Aligned_cols=13 Identities=46% Similarity=0.427 Sum_probs=11.6
Q ss_pred EEEEcCCCchHHH
Q psy7786 10 IIGIAFTGSGKTL 22 (252)
Q Consensus 10 ~~~~a~tgsGKT~ 22 (252)
+++.++.|||||.
T Consensus 3 I~l~G~~GsGKsT 15 (195)
T 2pbr_A 3 IAFEGIDGSGKTT 15 (195)
T ss_dssp EEEECSTTSCHHH
T ss_pred EEEECCCCCCHHH
Confidence 6889999999994
No 482
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=60.78 E-value=4.1 Score=33.62 Aligned_cols=20 Identities=30% Similarity=0.399 Sum_probs=16.4
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.=+.+.+|+|||||..
T Consensus 23 i~~Ge~~~llGpnGsGKSTL 42 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLF 42 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHH
T ss_pred EcCCCEEEEECCCCccHHHH
Confidence 34677788999999999954
No 483
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=60.76 E-value=11 Score=29.02 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=15.2
Q ss_pred CCC-cEEEEcCCCchHHHHh
Q psy7786 6 NSR-DIIGIAFTGSGKTLVF 24 (252)
Q Consensus 6 ~g~-d~~~~a~tgsGKT~a~ 24 (252)
.|+ ++++.++.|+|||.+.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a 23 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAM 23 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHH
T ss_pred CceEEEEEECCCCCcHHHHH
Confidence 455 6899999999999654
No 484
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=60.63 E-value=4.2 Score=30.54 Aligned_cols=14 Identities=36% Similarity=0.423 Sum_probs=11.9
Q ss_pred EEEEcCCCchHHHH
Q psy7786 10 IIGIAFTGSGKTLV 23 (252)
Q Consensus 10 ~~~~a~tgsGKT~a 23 (252)
.++.+++|||||..
T Consensus 26 ~~I~G~NgsGKSti 39 (203)
T 3qks_A 26 NLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEEcCCCCCHHHH
Confidence 57889999999954
No 485
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=60.40 E-value=3.7 Score=32.93 Aligned_cols=14 Identities=36% Similarity=0.294 Sum_probs=11.8
Q ss_pred cEEEEcCCCchHHH
Q psy7786 9 DIIGIAFTGSGKTL 22 (252)
Q Consensus 9 d~~~~a~tgsGKT~ 22 (252)
=+.+.+++|||||.
T Consensus 33 ii~I~G~sGsGKST 46 (290)
T 1odf_A 33 FIFFSGPQGSGKSF 46 (290)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 36788999999994
No 486
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=60.09 E-value=4 Score=33.90 Aligned_cols=20 Identities=25% Similarity=0.328 Sum_probs=16.0
Q ss_pred CCCcEEEEcCCCchHHHHhH
Q psy7786 6 NSRDIIGIAFTGSGKTLVFV 25 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a~~ 25 (252)
.|.=+.+.+++|||||...-
T Consensus 156 ~g~vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHH
Confidence 46668899999999996543
No 487
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=60.00 E-value=4.7 Score=33.46 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=16.2
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.=+.+.+|+|||||..
T Consensus 26 i~~Ge~~~llGpnGsGKSTL 45 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTT 45 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred EcCCCEEEEEcCCCchHHHH
Confidence 34677788999999999954
No 488
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=60.00 E-value=4 Score=31.53 Aligned_cols=18 Identities=33% Similarity=0.036 Sum_probs=14.0
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
.|.=+-+.+++|||||..
T Consensus 24 ~g~iigI~G~~GsGKSTl 41 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTV 41 (245)
T ss_dssp CSEEEEEECSTTSSHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 344477899999999954
No 489
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=59.95 E-value=4.1 Score=37.34 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=15.4
Q ss_pred CCCcEEEEcCCCchHHHH
Q psy7786 6 NSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~a 23 (252)
.+.++++.+++|+|||..
T Consensus 206 ~~~~vlL~G~~GtGKT~l 223 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAI 223 (758)
T ss_dssp SSCEEEEECCTTSSHHHH
T ss_pred CCCCeEEEcCCCCCHHHH
Confidence 467899999999999953
No 490
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=59.80 E-value=4.1 Score=31.87 Aligned_cols=16 Identities=31% Similarity=0.287 Sum_probs=13.7
Q ss_pred CCcEEEEcCCCchHHH
Q psy7786 7 SRDIIGIAFTGSGKTL 22 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~ 22 (252)
+.-+++++.+|||||.
T Consensus 4 ~~lIvl~G~pGSGKST 19 (260)
T 3a4m_A 4 IMLIILTGLPGVGKST 19 (260)
T ss_dssp CEEEEEECCTTSSHHH
T ss_pred CEEEEEEcCCCCCHHH
Confidence 4568999999999995
No 491
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=59.61 E-value=5.2 Score=33.58 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=16.7
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.=+.+.+|+|||||..
T Consensus 44 i~~Ge~~~llGpsGsGKSTL 63 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTL 63 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHH
T ss_pred EcCCCEEEEECCCCChHHHH
Confidence 45677889999999999954
No 492
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=59.59 E-value=3.6 Score=31.87 Aligned_cols=17 Identities=29% Similarity=0.270 Sum_probs=14.2
Q ss_pred CCCcEEEEcCCCchHHH
Q psy7786 6 NSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT~ 22 (252)
.+.-+++.++.|||||.
T Consensus 28 ~~~~I~l~G~~GsGKsT 44 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGT 44 (243)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 34568999999999994
No 493
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=59.34 E-value=23 Score=26.49 Aligned_cols=45 Identities=4% Similarity=0.013 Sum_probs=34.5
Q ss_pred CcEEEEEcCcHHHHHHHHHHHHHHHHhCCCCcceeeeeCCcccCcchhhhh
Q psy7786 46 GPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIK 96 (252)
Q Consensus 46 ~~~~lil~ptreLa~q~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~l~ 96 (252)
+-++||.++|++-+..+.+.++.. + +.+..++|+.+..++.+.++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~--~~~~~lhg~~~~~~r~~~~~ 75 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----G--HPAQALHGDLSQGERERVLG 75 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----T--CCEEEECSSSCHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----C--CCEEEEECCCCHHHHHHHHH
Confidence 346999999999998888877653 4 67888999988766655544
No 494
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=59.26 E-value=4.6 Score=33.46 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=16.2
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.=+.+.+|+|||||..
T Consensus 38 i~~Ge~~~llGpnGsGKSTL 57 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTI 57 (355)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCcHHHH
Confidence 34677788999999999954
No 495
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=59.25 E-value=4.5 Score=32.90 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=14.6
Q ss_pred CCCcEEEEcCCCchHH
Q psy7786 6 NSRDIIGIAFTGSGKT 21 (252)
Q Consensus 6 ~g~d~~~~a~tgsGKT 21 (252)
.|+-+++.+++|+||+
T Consensus 143 ~g~~vl~~G~sG~GKS 158 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKS 158 (314)
T ss_dssp TTEEEEEEESTTSSHH
T ss_pred CCEEEEEEeCCCCCHH
Confidence 5788999999999996
No 496
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=59.10 E-value=4.2 Score=30.02 Aligned_cols=14 Identities=36% Similarity=0.150 Sum_probs=12.3
Q ss_pred cEEEEcCCCchHHH
Q psy7786 9 DIIGIAFTGSGKTL 22 (252)
Q Consensus 9 d~~~~a~tgsGKT~ 22 (252)
-+.+.+++|||||.
T Consensus 10 ~I~i~G~~GsGKST 23 (203)
T 1uf9_A 10 IIGITGNIGSGKST 23 (203)
T ss_dssp EEEEEECTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47889999999994
No 497
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=59.06 E-value=20 Score=30.54 Aligned_cols=17 Identities=35% Similarity=0.374 Sum_probs=14.0
Q ss_pred CCcEEEEcCCCchHHHH
Q psy7786 7 SRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~a 23 (252)
++-+++.+++|+|||..
T Consensus 97 ~~vI~lvG~~GsGKTTt 113 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTT 113 (433)
T ss_dssp SEEEEECCCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45688899999999954
No 498
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=59.02 E-value=4.9 Score=33.36 Aligned_cols=20 Identities=20% Similarity=0.325 Sum_probs=16.1
Q ss_pred ccCCCcEEEEcCCCchHHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTLV 23 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~a 23 (252)
+..|.=+.+.+|+|||||..
T Consensus 26 i~~Ge~~~llGpnGsGKSTL 45 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTL 45 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHH
T ss_pred ECCCCEEEEECCCCchHHHH
Confidence 34677788999999999954
No 499
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=58.81 E-value=4.4 Score=30.51 Aligned_cols=16 Identities=25% Similarity=0.106 Sum_probs=13.4
Q ss_pred CCcEEEEcCCCchHHH
Q psy7786 7 SRDIIGIAFTGSGKTL 22 (252)
Q Consensus 7 g~d~~~~a~tgsGKT~ 22 (252)
+.-+.+.++.|||||.
T Consensus 4 ~~~I~i~G~~GSGKST 19 (218)
T 1vht_A 4 RYIVALTGGIGSGKST 19 (218)
T ss_dssp CEEEEEECCTTSCHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 3458899999999995
No 500
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=58.67 E-value=4.3 Score=35.95 Aligned_cols=19 Identities=16% Similarity=0.389 Sum_probs=16.2
Q ss_pred ccCCCcEEEEcCCCchHHH
Q psy7786 4 YRNSRDIIGIAFTGSGKTL 22 (252)
Q Consensus 4 ~~~g~d~~~~a~tgsGKT~ 22 (252)
+..|+-+.+.+|+|||||.
T Consensus 364 i~~G~~~~ivG~sGsGKST 382 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKST 382 (578)
T ss_dssp ECTTCEEEEECSTTSSHHH
T ss_pred ECCCCEEEEECCCCChHHH
Confidence 4567889999999999994
Done!