Your job contains 1 sequence.
>psy7786
MVTYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELAR
QTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPD
QVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS
GRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII
QYYCAALPIGSF
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy7786
(252 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1NAH6 - symbol:LOC100859810 "Uncharacterized p... 552 2.4e-53 1
RGD|1311758 - symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box po... 548 6.3e-53 1
RGD|1559513 - symbol:RGD1559513 "similar to DEAD (Asp-Glu... 548 6.3e-53 1
UNIPROTKB|A3KN07 - symbol:DDX41 "Uncharacterized protein"... 545 1.3e-52 1
UNIPROTKB|E2R052 - symbol:DDX41 "Uncharacterized protein"... 545 1.3e-52 1
UNIPROTKB|J9NZF6 - symbol:DDX41 "Uncharacterized protein"... 545 1.3e-52 1
UNIPROTKB|J3KNN5 - symbol:DDX41 "Probable ATP-dependent R... 545 1.3e-52 1
UNIPROTKB|Q9UJV9 - symbol:DDX41 "Probable ATP-dependent R... 545 1.3e-52 1
MGI|MGI:1920185 - symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) bo... 544 1.7e-52 1
FB|FBgn0015331 - symbol:abs "abstrakt" species:7227 "Dros... 508 1.1e-48 1
DICTYBASE|DDB_G0287361 - symbol:ddx41 "DEAD box protein a... 476 2.7e-45 1
ZFIN|ZDB-GENE-030131-1927 - symbol:ddx41 "DEAD (Asp-Glu-A... 462 8.1e-44 1
TAIR|locus:2176192 - symbol:AT5G51280 species:3702 "Arabi... 446 4.0e-42 1
TAIR|locus:2119176 - symbol:AT4G33370 species:3702 "Arabi... 433 9.6e-41 1
WB|WBGene00019245 - symbol:sacy-1 species:6239 "Caenorhab... 422 2.4e-39 1
UNIPROTKB|H0Y8L8 - symbol:DDX41 "Probable ATP-dependent R... 414 9.9e-39 1
FB|FBgn0029979 - symbol:CG10777 species:7227 "Drosophila ... 267 6.6e-22 1
FB|FBgn0036104 - symbol:CG6418 species:7227 "Drosophila m... 255 9.4e-21 1
ZFIN|ZDB-GENE-050706-53 - symbol:ddx42 "DEAD (Asp-Glu-Ala... 251 3.2e-20 1
UNIPROTKB|F1P0H1 - symbol:DDX42 "ATP-dependent RNA helica... 245 8.9e-20 1
MGI|MGI:1919297 - symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) bo... 246 1.1e-19 1
RGD|1304909 - symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box po... 246 1.1e-19 1
UNIPROTKB|E2RFF1 - symbol:DDX42 "Uncharacterized protein"... 246 1.1e-19 1
UNIPROTKB|Q86XP3 - symbol:DDX42 "ATP-dependent RNA helica... 246 1.1e-19 1
UNIPROTKB|Q5R7D1 - symbol:DDX42 "ATP-dependent RNA helica... 246 1.1e-19 1
UNIPROTKB|Q5F485 - symbol:DDX42 "ATP-dependent RNA helica... 246 1.2e-19 1
UNIPROTKB|E1BJD2 - symbol:DDX42 "Uncharacterized protein"... 246 1.2e-19 1
UNIPROTKB|F1NJ40 - symbol:DDX42 "ATP-dependent RNA helica... 245 1.5e-19 1
UNIPROTKB|D6RJA6 - symbol:DDX46 "Probable ATP-dependent R... 235 4.2e-19 1
UNIPROTKB|A7E307 - symbol:DDX17 "Uncharacterized protein"... 233 1.5e-18 1
UNIPROTKB|E2RJ60 - symbol:DDX17 "Uncharacterized protein"... 233 1.5e-18 1
MGI|MGI:1914290 - symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) bo... 233 1.5e-18 1
UNIPROTKB|C9JMU5 - symbol:DDX17 "Probable ATP-dependent R... 233 1.5e-18 1
UNIPROTKB|J3QRQ7 - symbol:DDX5 "Probable ATP-dependent RN... 223 1.7e-18 1
DICTYBASE|DDB_G0277857 - symbol:helB2 "putative U5 small ... 234 1.8e-18 1
UNIPROTKB|Q92841 - symbol:DDX17 "Probable ATP-dependent R... 233 1.9e-18 1
UNIPROTKB|H3BLZ8 - symbol:DDX17 "Probable ATP-dependent R... 233 1.9e-18 1
UNIPROTKB|F1PID8 - symbol:DDX17 "Uncharacterized protein"... 233 1.9e-18 1
UNIPROTKB|F1SKQ0 - symbol:DDX17 "Uncharacterized protein"... 233 1.9e-18 1
UNIPROTKB|Q7L014 - symbol:DDX46 "Probable ATP-dependent R... 235 2.0e-18 1
UNIPROTKB|F1PK90 - symbol:DDX46 "Uncharacterized protein"... 235 2.0e-18 1
UNIPROTKB|I3LR20 - symbol:DDX46 "Uncharacterized protein"... 235 2.0e-18 1
MGI|MGI:1920895 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) bo... 235 2.0e-18 1
RGD|708480 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box pol... 235 2.0e-18 1
UNIPROTKB|Q62780 - symbol:Ddx46 "Probable ATP-dependent R... 235 2.0e-18 1
UNIPROTKB|E1C2R8 - symbol:DDX17 "Uncharacterized protein"... 229 2.2e-18 1
GENEDB_PFALCIPARUM|PF14_0437 - symbol:PF14_0437 "helicase... 229 2.6e-18 1
UNIPROTKB|Q8IL13 - symbol:PF14_0437 "Helicase, putative" ... 229 2.6e-18 1
UNIPROTKB|F1MX40 - symbol:DDX46 "Uncharacterized protein"... 233 3.2e-18 1
GENEDB_PFALCIPARUM|PFE0925c - symbol:PFE0925c "snrnp prot... 233 3.6e-18 1
UNIPROTKB|Q8I0W7 - symbol:PFE0925c "Snrnp protein, putati... 233 3.6e-18 1
ASPGD|ASPL0000006660 - symbol:AN5931 species:162425 "Emer... 227 5.0e-18 1
GENEDB_PFALCIPARUM|PFE0430w - symbol:PFE0430w "ATP-depend... 233 5.3e-18 1
UNIPROTKB|Q8I416 - symbol:PFE0430w "ATP-dependent RNA Hel... 233 5.3e-18 1
MGI|MGI:105037 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box ... 227 6.0e-18 1
RGD|619906 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box heli... 227 6.0e-18 1
TAIR|locus:2035741 - symbol:RH20 "RNA helicase 20" specie... 225 6.2e-18 1
ZFIN|ZDB-GENE-030131-667 - symbol:ddx46 "DEAD (Asp-Glu-Al... 230 6.8e-18 1
CGD|CAL0005725 - symbol:PRP5 species:5476 "Candida albica... 229 6.9e-18 1
UNIPROTKB|Q5ADL0 - symbol:PRP5 "Pre-mRNA-processing ATP-d... 229 6.9e-18 1
UNIPROTKB|F1RSJ7 - symbol:DDX42 "Uncharacterized protein"... 228 9.6e-18 1
TAIR|locus:2074899 - symbol:AT3G09620 species:3702 "Arabi... 228 1.0e-17 1
UNIPROTKB|E1BSC0 - symbol:DDX46 "Uncharacterized protein"... 228 1.1e-17 1
ZFIN|ZDB-GENE-030131-18 - symbol:si:dkey-156n14.5 "si:dke... 224 1.5e-17 1
UNIPROTKB|F1MBQ8 - symbol:DDX5 "Uncharacterized protein" ... 223 1.6e-17 1
UNIPROTKB|J3KTA4 - symbol:DDX5 "Probable ATP-dependent RN... 223 1.6e-17 1
UNIPROTKB|P17844 - symbol:DDX5 "Probable ATP-dependent RN... 223 1.6e-17 1
UNIPROTKB|A5A6J2 - symbol:DDX5 "Probable ATP-dependent RN... 223 1.6e-17 1
UNIPROTKB|Q4R6M5 - symbol:DDX5 "Probable ATP-dependent RN... 223 1.6e-17 1
UNIPROTKB|Q5R4I9 - symbol:DDX5 "Probable ATP-dependent RN... 223 1.6e-17 1
ZFIN|ZDB-GENE-030131-925 - symbol:ddx5 "DEAD (Asp-Glu-Ala... 223 1.6e-17 1
TAIR|locus:2037416 - symbol:RCF1 "regulator of CBF gene e... 227 1.7e-17 1
TAIR|locus:2057640 - symbol:AT2G33730 species:3702 "Arabi... 224 1.7e-17 1
UNIPROTKB|F1PEA6 - symbol:DDX5 "Uncharacterized protein" ... 223 1.9e-17 1
UNIPROTKB|A4QSS5 - symbol:DBP2 "ATP-dependent RNA helicas... 221 2.1e-17 1
DICTYBASE|DDB_G0288501 - symbol:ddx42 "DEAD/DEAH box heli... 224 2.8e-17 1
CGD|CAL0003204 - symbol:DBP2 species:5476 "Candida albica... 220 2.8e-17 1
TAIR|locus:2162022 - symbol:AT5G63120 species:3702 "Arabi... 220 3.1e-17 1
FB|FBgn0035720 - symbol:CG10077 species:7227 "Drosophila ... 222 3.4e-17 1
TAIR|locus:2828586 - symbol:AT3G02065 species:3702 "Arabi... 218 3.7e-17 1
ZFIN|ZDB-GENE-050208-665 - symbol:ddx59 "DEAD (Asp-Glu-Al... 219 3.9e-17 1
UNIPROTKB|G3X7G8 - symbol:DDX59 "Uncharacterized protein"... 219 4.4e-17 1
POMBASE|SPCC10H11.01 - symbol:prp11 "ATP-dependent RNA he... 222 4.7e-17 1
SGD|S000005056 - symbol:DBP2 "ATP-dependent RNA helicase ... 217 5.6e-17 1
FB|FBgn0032690 - symbol:CG10333 species:7227 "Drosophila ... 219 7.2e-17 1
UNIPROTKB|E1BXX5 - symbol:DDX59 "Uncharacterized protein"... 215 1.2e-16 1
ASPGD|ASPL0000051195 - symbol:AN1634 species:162425 "Emer... 216 1.4e-16 1
WB|WBGene00008119 - symbol:C46F11.4 species:6239 "Caenorh... 216 1.5e-16 1
TAIR|locus:2065215 - symbol:AT2G47330 species:3702 "Arabi... 214 2.2e-16 1
UNIPROTKB|I3LNN1 - symbol:DDX23 "Uncharacterized protein"... 214 2.4e-16 1
RGD|1308685 - symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box po... 214 2.5e-16 1
UNIPROTKB|A6QLB2 - symbol:DDX23 "Uncharacterized protein"... 214 2.5e-16 1
UNIPROTKB|E2RTL6 - symbol:DDX23 "Uncharacterized protein"... 214 2.5e-16 1
UNIPROTKB|Q9BUQ8 - symbol:DDX23 "Probable ATP-dependent R... 214 2.5e-16 1
UNIPROTKB|F1NM08 - symbol:DDX5 "Uncharacterized protein" ... 211 3.0e-16 1
UNIPROTKB|F1NXI3 - symbol:DDX5 "Uncharacterized protein" ... 211 3.1e-16 1
ZFIN|ZDB-GENE-030131-6215 - symbol:ddx23 "DEAD (Asp-Glu-A... 213 3.1e-16 1
WB|WBGene00017162 - symbol:ddx-23 species:6239 "Caenorhab... 210 5.5e-16 1
POMBASE|SPBP8B7.16c - symbol:dbp2 "ATP-dependent RNA heli... 207 6.9e-16 1
FB|FBgn0003261 - symbol:Rm62 "Rm62" species:7227 "Drosoph... 208 8.8e-16 1
WARNING: Descriptions of 621 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|F1NAH6 [details] [associations]
symbol:LOC100859810 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0035458 "cellular response to interferon-beta" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
Length = 607
Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
Identities = 102/157 (64%), Positives = 126/157 (80%)
Query: 91 SLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMK 150
S+ + KGI Y+DPIKTSWRAPR IL++ + H+ +R+ ILVEG+ +PP SF+ MK
Sbjct: 124 SVKEMAKGITYDDPIKTSWRAPRYILAMSEARHNRVRKKYHILVEGEGIPPPIKSFKEMK 183
Query: 151 LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQE 210
P +++R L+ KGI++PTPIQ+QGIP LSGRD+IGIAFTGSGKTLVF LP++MFCLEQE
Sbjct: 184 FPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQE 243
Query: 211 TKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
+LPF EGPYGLIICPSRELARQTH II+YYC L
Sbjct: 244 KRLPFSKREGPYGLIICPSRELARQTHGIIEYYCRLL 280
Score = 332 (121.9 bits), Expect = 2.3e-29, P = 2.3e-29
Identities = 65/102 (63%), Positives = 78/102 (76%)
Query: 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT 62
T + RD+IGIAFTGSGKTLVF LP++MFCLEQE +LPF EGPYGLIICPSRELARQT
Sbjct: 210 TILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQT 269
Query: 63 HDIIQYYCA-----ALPIPLRTCLAIGGVPMNQSLDVIKKGI 99
H II+YYC +LP PLR L IGG+ + + ++ IK G+
Sbjct: 270 HGIIEYYCRLLQEDSLP-PLRCALCIGGMSVKEQMETIKHGV 310
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
Identities = 101/157 (64%), Positives = 124/157 (78%)
Query: 91 SLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMK 150
S+ + KGI Y+DPIKTSW PR +LS+ ++ H+ +R+ ILVEGD +PP SF+ MK
Sbjct: 128 SVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMK 187
Query: 151 LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQE 210
LP +++R L+ KGI PTPIQ+QGIP LSGRD+IGIAFTGSGKTLVF LP++MFCLEQE
Sbjct: 188 LPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQE 247
Query: 211 TKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
+LPF EGPYGLIICPSRELARQTH I++YYC L
Sbjct: 248 KRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLL 284
Score = 321 (118.1 bits), Expect = 4.0e-28, P = 4.0e-28
Identities = 62/101 (61%), Positives = 76/101 (75%)
Query: 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT 62
T + RD+IGIAFTGSGKTLVF LP++MFCLEQE +LPF EGPYGLIICPSRELARQT
Sbjct: 214 TILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQT 273
Query: 63 HDIIQYYCAALP---IPLRTC-LAIGGVPMNQSLDVIKKGI 99
H I++YYC L PL C L IGG+ + + ++ I+ G+
Sbjct: 274 HGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGV 314
>RGD|1559513 [details] [associations]
symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
NextBio:667517 Uniprot:D4ADJ9
Length = 621
Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
Identities = 101/157 (64%), Positives = 124/157 (78%)
Query: 91 SLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMK 150
S+ + KGI Y+DPIKTSW PR +LS+ ++ H+ +R+ ILVEGD +PP SF+ MK
Sbjct: 127 SVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMK 186
Query: 151 LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQE 210
LP +++R L+ KGI PTPIQ+QGIP LSGRD+IGIAFTGSGKTLVF LP++MFCLEQE
Sbjct: 187 LPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQE 246
Query: 211 TKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
+LPF EGPYGLIICPSRELARQTH I++YYC L
Sbjct: 247 KRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLL 283
Score = 321 (118.1 bits), Expect = 3.9e-28, P = 3.9e-28
Identities = 62/101 (61%), Positives = 76/101 (75%)
Query: 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT 62
T + RD+IGIAFTGSGKTLVF LP++MFCLEQE +LPF EGPYGLIICPSRELARQT
Sbjct: 213 TILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQT 272
Query: 63 HDIIQYYCAALP---IPLRTC-LAIGGVPMNQSLDVIKKGI 99
H I++YYC L PL C L IGGV + + ++ ++ G+
Sbjct: 273 HGILEYYCRLLQEDSSPLLHCALCIGGVSLKEQMETMRHGV 313
>UNIPROTKB|A3KN07 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
Length = 622
Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
Identities = 100/157 (63%), Positives = 123/157 (78%)
Query: 91 SLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMK 150
S+ + KGI Y+DPIKTSW PR +LS+ ++ H+ +R+ ILVEGD +PP SF+ MK
Sbjct: 128 SVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMK 187
Query: 151 LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQE 210
P +++R L+ KGI PTPIQ+QGIP LSGRD+IGIAFTGSGKTLVF LP++MFCLEQE
Sbjct: 188 FPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQE 247
Query: 211 TKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
+LPF EGPYGLIICPSRELARQTH I++YYC L
Sbjct: 248 KRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLL 284
Score = 321 (118.1 bits), Expect = 4.0e-28, P = 4.0e-28
Identities = 62/101 (61%), Positives = 76/101 (75%)
Query: 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT 62
T + RD+IGIAFTGSGKTLVF LP++MFCLEQE +LPF EGPYGLIICPSRELARQT
Sbjct: 214 TILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQT 273
Query: 63 HDIIQYYCAALP---IPLRTC-LAIGGVPMNQSLDVIKKGI 99
H I++YYC L PL C L IGG+ + + ++ I+ G+
Sbjct: 274 HGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGV 314
>UNIPROTKB|E2R052 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
RefSeq:XP_536417.2 ProteinModelPortal:E2R052
Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
NextBio:20854482 Uniprot:E2R052
Length = 622
Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
Identities = 100/157 (63%), Positives = 123/157 (78%)
Query: 91 SLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMK 150
S+ + KGI Y+DPIKTSW PR +LS+ ++ H+ +R+ ILVEGD +PP SF+ MK
Sbjct: 128 SVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMK 187
Query: 151 LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQE 210
P +++R L+ KGI PTPIQ+QGIP LSGRD+IGIAFTGSGKTLVF LP++MFCLEQE
Sbjct: 188 FPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQE 247
Query: 211 TKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
+LPF EGPYGLIICPSRELARQTH I++YYC L
Sbjct: 248 KRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLL 284
Score = 321 (118.1 bits), Expect = 4.0e-28, P = 4.0e-28
Identities = 62/101 (61%), Positives = 76/101 (75%)
Query: 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT 62
T + RD+IGIAFTGSGKTLVF LP++MFCLEQE +LPF EGPYGLIICPSRELARQT
Sbjct: 214 TILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQT 273
Query: 63 HDIIQYYCAALP---IPLRTC-LAIGGVPMNQSLDVIKKGI 99
H I++YYC L PL C L IGG+ + + ++ I+ G+
Sbjct: 274 HGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGV 314
>UNIPROTKB|J9NZF6 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
Length = 649
Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
Identities = 100/157 (63%), Positives = 123/157 (78%)
Query: 91 SLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMK 150
S+ + KGI Y+DPIKTSW PR +LS+ ++ H+ +R+ ILVEGD +PP SF+ MK
Sbjct: 155 SVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMK 214
Query: 151 LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQE 210
P +++R L+ KGI PTPIQ+QGIP LSGRD+IGIAFTGSGKTLVF LP++MFCLEQE
Sbjct: 215 FPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQE 274
Query: 211 TKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
+LPF EGPYGLIICPSRELARQTH I++YYC L
Sbjct: 275 KRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLL 311
Score = 321 (118.1 bits), Expect = 4.5e-28, P = 4.5e-28
Identities = 62/101 (61%), Positives = 76/101 (75%)
Query: 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT 62
T + RD+IGIAFTGSGKTLVF LP++MFCLEQE +LPF EGPYGLIICPSRELARQT
Sbjct: 241 TILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQT 300
Query: 63 HDIIQYYCAALP---IPLRTC-LAIGGVPMNQSLDVIKKGI 99
H I++YYC L PL C L IGG+ + + ++ I+ G+
Sbjct: 301 HGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGV 341
>UNIPROTKB|J3KNN5 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
Ensembl:ENST00000330503 Uniprot:J3KNN5
Length = 640
Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
Identities = 100/157 (63%), Positives = 123/157 (78%)
Query: 91 SLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMK 150
S+ + KGI Y+DPIKTSW PR +LS+ ++ H+ +R+ ILVEGD +PP SF+ MK
Sbjct: 146 SVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMK 205
Query: 151 LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQE 210
P +++R L+ KGI PTPIQ+QGIP LSGRD+IGIAFTGSGKTLVF LP++MFCLEQE
Sbjct: 206 FPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQE 265
Query: 211 TKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
+LPF EGPYGLIICPSRELARQTH I++YYC L
Sbjct: 266 KRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLL 302
Score = 321 (118.1 bits), Expect = 4.4e-28, P = 4.4e-28
Identities = 62/101 (61%), Positives = 76/101 (75%)
Query: 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT 62
T + RD+IGIAFTGSGKTLVF LP++MFCLEQE +LPF EGPYGLIICPSRELARQT
Sbjct: 232 TILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQT 291
Query: 63 HDIIQYYCAALP---IPLRTC-LAIGGVPMNQSLDVIKKGI 99
H I++YYC L PL C L IGG+ + + ++ I+ G+
Sbjct: 292 HGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGV 332
>UNIPROTKB|Q9UJV9 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
"cellular response to interferon-beta" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
Length = 622
Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
Identities = 100/157 (63%), Positives = 123/157 (78%)
Query: 91 SLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMK 150
S+ + KGI Y+DPIKTSW PR +LS+ ++ H+ +R+ ILVEGD +PP SF+ MK
Sbjct: 128 SVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMK 187
Query: 151 LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQE 210
P +++R L+ KGI PTPIQ+QGIP LSGRD+IGIAFTGSGKTLVF LP++MFCLEQE
Sbjct: 188 FPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQE 247
Query: 211 TKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
+LPF EGPYGLIICPSRELARQTH I++YYC L
Sbjct: 248 KRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLL 284
Score = 321 (118.1 bits), Expect = 4.0e-28, P = 4.0e-28
Identities = 62/101 (61%), Positives = 76/101 (75%)
Query: 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT 62
T + RD+IGIAFTGSGKTLVF LP++MFCLEQE +LPF EGPYGLIICPSRELARQT
Sbjct: 214 TILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQT 273
Query: 63 HDIIQYYCAALP---IPLRTC-LAIGGVPMNQSLDVIKKGI 99
H I++YYC L PL C L IGG+ + + ++ I+ G+
Sbjct: 274 HGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGV 314
>MGI|MGI:1920185 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
CleanEx:MM_DDX41 Genevestigator:Q91VN6
GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
Length = 622
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 100/157 (63%), Positives = 123/157 (78%)
Query: 91 SLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMK 150
S+ + KGI Y+DPIKTSW PR +LS+ ++ H+ +R+ ILVEGD +PP SF+ MK
Sbjct: 128 SVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMK 187
Query: 151 LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQE 210
P +++R L+ KGI PTPIQ+QGIP LSGRD+IGIAFTGSGKTLVF LP++MFCLEQE
Sbjct: 188 FPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQE 247
Query: 211 TKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
+LPF EGPYGLIICPSRELARQTH I++YYC L
Sbjct: 248 KRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLL 284
Score = 321 (118.1 bits), Expect = 4.0e-28, P = 4.0e-28
Identities = 62/101 (61%), Positives = 76/101 (75%)
Query: 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT 62
T + RD+IGIAFTGSGKTLVF LP++MFCLEQE +LPF EGPYGLIICPSRELARQT
Sbjct: 214 TILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQT 273
Query: 63 HDIIQYYCAALP---IPLRTC-LAIGGVPMNQSLDVIKKGI 99
H I++YYC L PL C L IGG+ + + ++ I+ G+
Sbjct: 274 HGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGV 314
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
Identities = 95/149 (63%), Positives = 115/149 (77%)
Query: 95 IKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPES 154
+ KGIQY PIKT+W+ PR I + ++ + +R LRILVEG+ P SFR MK P+
Sbjct: 128 LAKGIQYEQPIKTAWKPPRYIREMSEEEREAVRHELRILVEGETPSPPIRSFREMKFPKG 187
Query: 155 LVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLP 214
++ L AKGIK PTPIQVQG+P L+GRD+IGIAFTGSGKTLVFVLP++MF LEQE LP
Sbjct: 188 ILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLP 247
Query: 215 FLPGEGPYGLIICPSRELARQTHDIIQYY 243
F EGPYGLIICPSRELA+QTH+IIQ+Y
Sbjct: 248 FERNEGPYGLIICPSRELAKQTHEIIQHY 276
Score = 332 (121.9 bits), Expect = 2.4e-29, P = 2.4e-29
Identities = 64/96 (66%), Positives = 81/96 (84%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD+IGIAFTGSGKTLVFVLP++MF LEQE LPF EGPYGLIICPSRELA+QTH+IIQ
Sbjct: 215 RDLIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQ 274
Query: 68 YYCAALP---IP-LRTCLAIGGVPMNQSLDVIKKGI 99
+Y L +P +R+CLA+GG+P++++LDVI +G+
Sbjct: 275 HYSKHLQACGMPEIRSCLAMGGLPVSEALDVISRGV 310
>DICTYBASE|DDB_G0287361 [details] [associations]
symbol:ddx41 "DEAD box protein abstrakt"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
Length = 671
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 86/151 (56%), Positives = 116/151 (76%)
Query: 97 KGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLV 156
K + Y D IKT+WRAPR IL ++ H +R L I+ +G+D+PP +F+ MK+P+ ++
Sbjct: 175 KDVIYTDSIKTNWRAPRYILERDEKDHQKVRDQLNIITDGEDIPPPITTFKEMKIPKPVI 234
Query: 157 RALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL 216
L KGIKKP+PIQVQG+P LSGRD+IGIA+TGSGKTLVF LP+++F LE+E KLP +
Sbjct: 235 DVLLEKGIKKPSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPMVLFALEEECKLPII 294
Query: 217 PGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
GEGP+GLI+CPSRELARQT+D++ + AL
Sbjct: 295 QGEGPFGLILCPSRELARQTYDLVNSFTNAL 325
Score = 286 (105.7 bits), Expect = 3.1e-24, P = 3.1e-24
Identities = 56/99 (56%), Positives = 75/99 (75%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA+TGSGKTLVF LP+++F LE+E KLP + GEGP+GLI+CPSRELARQT+D+
Sbjct: 258 SGRDMIGIAYTGSGKTLVFTLPMVLFALEEECKLPIIQGEGPFGLILCPSRELARQTYDL 317
Query: 66 IQYYCAALPI----P-LRTCLAIGGVPMNQSLDVIKKGI 99
+ + AL P LRT LAIGG+ + + + KKG+
Sbjct: 318 VNSFTNALHKNGGHPQLRTLLAIGGIDLREQEHIFKKGV 356
>ZFIN|ZDB-GENE-030131-1927 [details] [associations]
symbol:ddx41 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490
ZFIN:ZDB-GENE-030131-1927 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
EMBL:CABZ01072950 EMBL:CABZ01072951 EMBL:CABZ01072952
IPI:IPI00961669 Ensembl:ENSDART00000061987 Bgee:F1QQ09
Uniprot:F1QQ09
Length = 473
Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
Identities = 88/141 (62%), Positives = 107/141 (75%)
Query: 108 SWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKP 167
SW APR ILS+P H+ +R+ ILVEG+ +P SFR MK P+++++ L+ KGI P
Sbjct: 1 SWNAPRYILSMPAVRHERVRKKYHILVEGEGIPAPIKSFREMKFPQAILKGLKKKGIVHP 60
Query: 168 TPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIIC 227
TPIQ+QGIP LSGRD+IGIAFTGSGKTLVF LPI+MFCLEQE +LPF EGPYGLIIC
Sbjct: 61 TPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEKRLPFCKREGPYGLIIC 120
Query: 228 PSRELARQTHD-IIQYYCAAL 247
PS +A+ TH II+YYC L
Sbjct: 121 PSVNVAKHTHHGIIEYYCKLL 141
Score = 287 (106.1 bits), Expect = 7.1e-25, P = 7.1e-25
Identities = 58/99 (58%), Positives = 72/99 (72%)
Query: 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT 62
T + RD+IGIAFTGSGKTLVF LPI+MFCLEQE +LPF EGPYGLIICPS +A+ T
Sbjct: 70 TILSGRDMIGIAFTGSGKTLVFTLPIIMFCLEQEKRLPFCKREGPYGLIICPSVNVAKHT 129
Query: 63 HD-IIQYYCAALP---IP-LRTCLAIGGVPMNQSLDVIK 96
H II+YYC L P +R L IGG+ + + ++V+K
Sbjct: 130 HHGIIEYYCKLLEDEGAPQMRCALCIGGMSVKEQMEVVK 168
>TAIR|locus:2176192 [details] [associations]
symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
Uniprot:Q9LU46
Length = 591
Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
Identities = 81/157 (51%), Positives = 113/157 (71%)
Query: 91 SLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMK 150
S+ + KGI Y +P+ T W+ P I + + D+IR+ I+V GDD+PP +F+ MK
Sbjct: 93 SVRELAKGITYTEPLLTGWKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMK 152
Query: 151 LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQE 210
P ++ L+ KGI +PTPIQVQG+P L+GRD+IGIAFTGSGKTLVFVLP++M L++E
Sbjct: 153 FPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEE 212
Query: 211 TKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
+P GEGP GLI+CPSRELARQT+++++ + A L
Sbjct: 213 MMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPL 249
Score = 288 (106.4 bits), Expect = 1.3e-24, P = 1.3e-24
Identities = 55/97 (56%), Positives = 74/97 (76%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD+IGIAFTGSGKTLVFVLP++M L++E +P GEGP GLI+CPSRELARQT+++++
Sbjct: 184 RDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVE 243
Query: 68 YYCAAL-----PIPLRTCLAIGGVPMNQSLDVIKKGI 99
+ A L P PLR+ L IGG+ M L+V+K+G+
Sbjct: 244 QFVAPLVEAGYP-PLRSLLCIGGIDMRSQLEVVKRGV 279
>TAIR|locus:2119176 [details] [associations]
symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
Uniprot:Q9SZB4
Length = 542
Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
Identities = 79/157 (50%), Positives = 111/157 (70%)
Query: 91 SLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMK 150
S+ + +GI Y +P+ T W+ P + + + D+IR+ I V G+D+PP +F MK
Sbjct: 44 SVGELARGITYTEPLSTWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMK 103
Query: 151 LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQE 210
P L+R L+ KGI PTPIQVQG+P LSGRD+IGIAFTGSGKTLVFVLP+++ L++E
Sbjct: 104 FPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEE 163
Query: 211 TKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
+P GEGP L+ICPSRELA+QT+D+++ + A+L
Sbjct: 164 IMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASL 200
Score = 284 (105.0 bits), Expect = 2.8e-24, P = 2.8e-24
Identities = 55/98 (56%), Positives = 74/98 (75%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIAFTGSGKTLVFVLP+++ L++E +P GEGP L+ICPSRELA+QT+D+
Sbjct: 133 SGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDV 192
Query: 66 IQYYCAALP---IP-LRTCLAIGGVPMNQSLDVIKKGI 99
++ + A+L P LR+ L IGGV M LDV+KKG+
Sbjct: 193 VEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGV 230
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 422 (153.6 bits), Expect = 2.4e-39, P = 2.4e-39
Identities = 85/147 (57%), Positives = 106/147 (72%)
Query: 95 IKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPES 154
+ KG +Y +PI T+WR P I + ++I R+ L I EGD +PP SF MK P+S
Sbjct: 140 LTKGEKYEEPIVTAWRPPGHIRRQSQEDYEIQRKRLGISCEGDHIPPPIGSFLEMKFPKS 199
Query: 155 LVRALEA-KGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKL 213
L+ ++ KGI PT IQ+QGIP ALSGRD+IGIA TGSGKT+ FVLP++MFCLEQE KL
Sbjct: 200 LLEFMQKQKGIVTPTAIQIQGIPVALSGRDMIGIASTGSGKTMTFVLPLVMFCLEQEMKL 259
Query: 214 PFLPGEGPYGLIICPSRELARQTHDII 240
PF+ EGP+GLII PSRELARQ D+I
Sbjct: 260 PFMRSEGPFGLIIVPSRELARQIFDLI 286
Score = 264 (98.0 bits), Expect = 6.4e-22, P = 6.4e-22
Identities = 57/99 (57%), Positives = 71/99 (71%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHD- 64
+ RD+IGIA TGSGKT+ FVLP++MFCLEQE KLPF+ EGP+GLII PSRELARQ D
Sbjct: 226 SGRDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGLIIVPSRELARQIFDL 285
Query: 65 IIQYYCA----ALPIPLRTCLAIGGVPMNQSLDVIKKGI 99
II+ + A LP +R L IGGVP+ + ++ GI
Sbjct: 286 IIEMFDALGKAGLP-EMRAGLCIGGVPIGEQAKDVRDGI 323
>UNIPROTKB|H0Y8L8 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
Ensembl:ENST00000508279 Uniprot:H0Y8L8
Length = 173
Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
Identities = 76/109 (69%), Positives = 89/109 (81%)
Query: 139 VPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVF 198
+PP SF+ MK P +++R L+ KGI PTPIQ+QGIP LSGRD+IGIAFTGSGKTLVF
Sbjct: 2 IPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVF 61
Query: 199 VLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
LP++MFCLEQE +LPF EGPYGLIICPSRELARQTH I++YYC L
Sbjct: 62 TLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLL 110
Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
Identities = 64/114 (56%), Positives = 80/114 (70%)
Query: 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT 62
T + RD+IGIAFTGSGKTLVF LP++MFCLEQE +LPF EGPYGLIICPSRELARQT
Sbjct: 40 TILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQT 99
Query: 63 HDIIQYYCAALP---IPLRTC-LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAP 112
H I++YYC L PL C L IGG+ + + ++ I+ +Q + + W P
Sbjct: 100 HGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQMETIRHAVQSSADHQRPWTRP 153
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 267 (99.0 bits), Expect = 6.6e-22, P = 6.6e-22
Identities = 56/132 (42%), Positives = 80/132 (60%)
Query: 112 PRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQ 171
P + QV +I RR L I V G+++P SF LP ++ ++ +G KPT IQ
Sbjct: 206 PNTLAKSEQQVAEI-RRELEITVSGNELPHPVVSFEESSLPAHVIEEMKRQGFTKPTAIQ 264
Query: 172 VQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRE 231
QG P ALSGRD++GIA TGSGKTL ++LP ++ Q P + GEGP L++ P+RE
Sbjct: 265 SQGWPIALSGRDLVGIAQTGSGKTLAYMLPAIVHIGNQP---PIIRGEGPIALVLAPTRE 321
Query: 232 LARQTHDIIQYY 243
LA+Q +++ Y
Sbjct: 322 LAQQIQSVVRDY 333
Score = 159 (61.0 bits), Expect = 8.2e-09, P = 8.2e-09
Identities = 35/96 (36%), Positives = 58/96 (60%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD++GIA TGSGKTL ++LP ++ Q P + GEGP L++ P+RELA+Q +
Sbjct: 273 SGRDLVGIAQTGSGKTLAYMLPAIVHIGNQP---PIIRGEGPIALVLAPTRELAQQIQSV 329
Query: 66 IQYYCAALPIPLR-TCLAIGGVPMNQSLDVIKKGIQ 100
++ Y +R TC+ G + Q+ D + +G++
Sbjct: 330 VRDYGHLCKPEIRHTCIFGGSSKVPQARD-LDRGVE 364
>FB|FBgn0036104 [details] [associations]
symbol:CG6418 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
NextBio:812543 Uniprot:Q9VTC1
Length = 791
Score = 255 (94.8 bits), Expect = 9.4e-21, P = 9.4e-21
Identities = 60/141 (42%), Positives = 82/141 (58%)
Query: 99 IQYNDPIKTSWRAPRCILSLPD-QVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVR 157
I+Y K + I +L D QV ++ RR L + V G P SF E L++
Sbjct: 224 IEYEPFEKNFYTQHDDIAALDDEQVREL-RRTLGVKVTGPSPPKPVTSFGHFGFDEQLIK 282
Query: 158 ALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP 217
A+ +PTPIQ Q +P ALSGRDIIGIA TGSGKT F+ P+LM ++Q+ P
Sbjct: 283 AVRKAEYTQPTPIQAQAVPTALSGRDIIGIAKTGSGKTAAFIWPMLMHVMDQKQ---LKP 339
Query: 218 GEGPYGLIICPSRELARQTHD 238
G+GP GLI+ P+REL+ Q ++
Sbjct: 340 GDGPIGLILAPTRELSLQIYN 360
Score = 154 (59.3 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 37/98 (37%), Positives = 57/98 (58%)
Query: 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT 62
T + RDIIGIA TGSGKT F+ P+LM ++Q+ PG+GP GLI+ P+REL+ Q
Sbjct: 302 TALSGRDIIGIAKTGSGKTAAFIWPMLMHVMDQKQ---LKPGDGPIGLILAPTRELSLQI 358
Query: 63 HDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
++ + + + + C GG QS +++G +
Sbjct: 359 YNEAKKFGKVYNLNVVCCYG-GGSKWEQS-KALEQGAE 394
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 251 (93.4 bits), Expect = 3.2e-20, P = 3.2e-20
Identities = 53/112 (47%), Positives = 69/112 (61%)
Query: 126 IRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDII 185
+RR L + V G P SF E L+ + +PTPIQ QG+P ALSGRD I
Sbjct: 239 LRRKLNLKVSGAAPPKPATSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDAI 298
Query: 186 GIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
GIA TGSGKT F+ PIL+ ++Q+ +L PGEGP +I+CP+REL +Q H
Sbjct: 299 GIAKTGSGKTAAFIWPILVHIMDQK-ELE--PGEGPIAVIVCPTRELCQQIH 347
Score = 162 (62.1 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 38/95 (40%), Positives = 57/95 (60%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD IGIA TGSGKT F+ PIL+ ++Q+ +L PGEGP +I+CP+REL +Q H
Sbjct: 293 SGRDAIGIAKTGSGKTAAFIWPILVHIMDQK-ELE--PGEGPIAVIVCPTRELCQQIHAE 349
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + A LR+ GG M + +++G +
Sbjct: 350 CKRFGKAYG--LRSVAVYGGGSMWEQAKALQEGAE 382
Score = 38 (18.4 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 187 IAFTGSGKTLVFV 199
+ FT +G LVFV
Sbjct: 497 VEFTSAGSVLVFV 509
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 245 (91.3 bits), Expect = 8.9e-20, P = 8.9e-20
Identities = 55/124 (44%), Positives = 76/124 (61%)
Query: 115 ILSL-PDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQ 173
I SL P QV ++ R L + V G P SF E L+ + +PTPIQ Q
Sbjct: 219 ITSLTPQQVVEL-RHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQ 277
Query: 174 GIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELA 233
G+P A+SGRD+IGIA TGSGKT F+ P+L+ ++Q+ +L PG+GP +I+CP+REL
Sbjct: 278 GVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK-ELE--PGDGPIAVIVCPTRELC 334
Query: 234 RQTH 237
+Q H
Sbjct: 335 QQIH 338
Score = 160 (61.4 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 36/95 (37%), Positives = 58/95 (61%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT F+ P+L+ ++Q+ +L PG+GP +I+CP+REL +Q H
Sbjct: 284 SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK-ELE--PGDGPIAVIVCPTRELCQQIHSE 340
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + A LR+ GG M + +++G +
Sbjct: 341 CKRFGKAYN--LRSVAVYGGGSMWEQAKALQEGAE 373
Score = 38 (18.4 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 187 IAFTGSGKTLVFV 199
+ FT SG L+FV
Sbjct: 488 VEFTSSGSVLLFV 500
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 246 (91.7 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 53/119 (44%), Positives = 73/119 (61%)
Query: 119 PDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAA 178
P Q+ D+ R L + V G P SF E L+ + +PTPIQ QG+P A
Sbjct: 229 PQQLIDL-RHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVA 287
Query: 179 LSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
LSGRD+IGIA TGSGKT F+ P+L+ ++Q+ +L PG+GP +I+CP+REL +Q H
Sbjct: 288 LSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK-ELE--PGDGPIAVIVCPTRELCQQIH 343
Score = 158 (60.7 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 36/95 (37%), Positives = 58/95 (61%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT F+ P+L+ ++Q+ +L PG+GP +I+CP+REL +Q H
Sbjct: 289 SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK-ELE--PGDGPIAVIVCPTRELCQQIHAE 345
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + A LR+ GG M + +++G +
Sbjct: 346 CKRFGKAYN--LRSVAVYGGGSMWEQAKALQEGAE 378
Score = 38 (18.4 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 187 IAFTGSGKTLVFV 199
+ FT SG L+FV
Sbjct: 493 VEFTSSGSVLLFV 505
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 246 (91.7 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 53/119 (44%), Positives = 73/119 (61%)
Query: 119 PDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAA 178
P Q+ D+ R L + V G P SF E L+ + +PTPIQ QG+P A
Sbjct: 229 PQQLIDL-RHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVA 287
Query: 179 LSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
LSGRD+IGIA TGSGKT F+ P+L+ ++Q+ +L PG+GP +I+CP+REL +Q H
Sbjct: 288 LSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK-ELE--PGDGPIAVIVCPTRELCQQIH 343
Score = 158 (60.7 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 36/95 (37%), Positives = 58/95 (61%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT F+ P+L+ ++Q+ +L PG+GP +I+CP+REL +Q H
Sbjct: 289 SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK-ELE--PGDGPIAVIVCPTRELCQQIHAE 345
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + A LR+ GG M + +++G +
Sbjct: 346 CKRFGKAYN--LRSVAVYGGGSMWEQAKALQEGAE 378
Score = 38 (18.4 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 187 IAFTGSGKTLVFV 199
+ FT SG L+FV
Sbjct: 493 VEFTSSGSVLLFV 505
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 246 (91.7 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 53/119 (44%), Positives = 73/119 (61%)
Query: 119 PDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAA 178
P Q+ D+ R L + V G P SF E L+ + +PTPIQ QG+P A
Sbjct: 229 PQQLIDL-RHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVA 287
Query: 179 LSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
LSGRD+IGIA TGSGKT F+ P+L+ ++Q+ +L PG+GP +I+CP+REL +Q H
Sbjct: 288 LSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK-ELE--PGDGPIAVIVCPTRELCQQIH 343
Score = 158 (60.7 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 36/95 (37%), Positives = 58/95 (61%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT F+ P+L+ ++Q+ +L PG+GP +I+CP+REL +Q H
Sbjct: 289 SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK-ELE--PGDGPIAVIVCPTRELCQQIHAE 345
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + A LR+ GG M + +++G +
Sbjct: 346 CKRFGKAYN--LRSVAVYGGGSMWEQAKALQEGAE 378
Score = 38 (18.4 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 187 IAFTGSGKTLVFV 199
+ FT SG L+FV
Sbjct: 493 VEFTSSGSVLLFV 505
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 246 (91.7 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 53/119 (44%), Positives = 73/119 (61%)
Query: 119 PDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAA 178
P Q+ D+ R L + V G P SF E L+ + +PTPIQ QG+P A
Sbjct: 229 PQQLIDL-RHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVA 287
Query: 179 LSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
LSGRD+IGIA TGSGKT F+ P+L+ ++Q+ +L PG+GP +I+CP+REL +Q H
Sbjct: 288 LSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK-ELE--PGDGPIAVIVCPTRELCQQIH 343
Score = 158 (60.7 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 36/95 (37%), Positives = 58/95 (61%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT F+ P+L+ ++Q+ +L PG+GP +I+CP+REL +Q H
Sbjct: 289 SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK-ELE--PGDGPIAVIVCPTRELCQQIHAE 345
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + A LR+ GG M + +++G +
Sbjct: 346 CKRFGKAYN--LRSVAVYGGGSMWEQAKALQEGAE 378
Score = 38 (18.4 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 187 IAFTGSGKTLVFV 199
+ FT SG L+FV
Sbjct: 493 VEFTSSGSVLLFV 505
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 246 (91.7 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 53/119 (44%), Positives = 73/119 (61%)
Query: 119 PDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAA 178
P Q+ D+ R L + V G P SF E L+ + +PTPIQ QG+P A
Sbjct: 229 PQQLIDL-RHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVA 287
Query: 179 LSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
LSGRD+IGIA TGSGKT F+ P+L+ ++Q+ +L PG+GP +I+CP+REL +Q H
Sbjct: 288 LSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK-ELE--PGDGPIAVIVCPTRELCQQIH 343
Score = 155 (59.6 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 36/95 (37%), Positives = 58/95 (61%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT F+ P+L+ ++Q+ +L PG+GP +I+CP+REL +Q H
Sbjct: 289 SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK-ELE--PGDGPIAVIVCPTRELCQQIHAE 345
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + A LR+ GG M + +++G +
Sbjct: 346 GKRFGKAYN--LRSVAVYGGGSMWEQAKALQEGAE 378
Score = 38 (18.4 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 187 IAFTGSGKTLVFV 199
+ FT SG L+FV
Sbjct: 493 VEFTSSGSVLLFV 505
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 246 (91.7 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 55/124 (44%), Positives = 76/124 (61%)
Query: 115 ILSL-PDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQ 173
I SL P QV ++ R L + V G P SF E L+ + +PTPIQ Q
Sbjct: 224 ITSLTPQQVVEL-RHKLNLRVSGAAPPRPGSSFARFGFDEQLMHQIRKSEYTQPTPIQCQ 282
Query: 174 GIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELA 233
G+P A+SGRD+IGIA TGSGKT F+ P+L+ ++Q+ +L PG+GP +I+CP+REL
Sbjct: 283 GVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK-ELE--PGDGPIAVIVCPTRELC 339
Query: 234 RQTH 237
+Q H
Sbjct: 340 QQIH 343
Score = 160 (61.4 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
Identities = 36/95 (37%), Positives = 58/95 (61%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT F+ P+L+ ++Q+ +L PG+GP +I+CP+REL +Q H
Sbjct: 289 SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK-ELE--PGDGPIAVIVCPTRELCQQIHSE 345
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + A LR+ GG M + +++G +
Sbjct: 346 CKRFGKAYN--LRSVAVYGGGSMWEQAKALQEGAE 378
Score = 38 (18.4 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 187 IAFTGSGKTLVFV 199
+ FT SG L+FV
Sbjct: 493 VEFTSSGSVLLFV 505
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 246 (91.7 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 53/119 (44%), Positives = 73/119 (61%)
Query: 119 PDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAA 178
P Q+ D+ R L + V G P SF E L+ + +PTPIQ QG+P A
Sbjct: 229 PQQLIDL-RHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVA 287
Query: 179 LSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
LSGRD+IGIA TGSGKT F+ P+L+ ++Q+ +L PG+GP +I+CP+REL +Q H
Sbjct: 288 LSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK-ELE--PGDGPIAVIVCPTRELCQQIH 343
Score = 158 (60.7 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 36/95 (37%), Positives = 58/95 (61%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT F+ P+L+ ++Q+ +L PG+GP +I+CP+REL +Q H
Sbjct: 289 SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK-ELE--PGDGPIAVIVCPTRELCQQIHAE 345
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + A LR+ GG M + +++G +
Sbjct: 346 CKRFGKAYN--LRSVAVYGGGSMWEQAKALQEGAE 378
Score = 38 (18.4 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 187 IAFTGSGKTLVFV 199
+ FT SG L+FV
Sbjct: 492 VEFTSSGSVLLFV 504
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 245 (91.3 bits), Expect = 1.5e-19, P = 1.5e-19
Identities = 55/124 (44%), Positives = 76/124 (61%)
Query: 115 ILSL-PDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQ 173
I SL P QV ++ R L + V G P SF E L+ + +PTPIQ Q
Sbjct: 226 ITSLTPQQVVEL-RHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQ 284
Query: 174 GIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELA 233
G+P A+SGRD+IGIA TGSGKT F+ P+L+ ++Q+ +L PG+GP +I+CP+REL
Sbjct: 285 GVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK-ELE--PGDGPIAVIVCPTRELC 341
Query: 234 RQTH 237
+Q H
Sbjct: 342 QQIH 345
Score = 160 (61.4 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 36/95 (37%), Positives = 58/95 (61%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT F+ P+L+ ++Q+ +L PG+GP +I+CP+REL +Q H
Sbjct: 291 SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK-ELE--PGDGPIAVIVCPTRELCQQIHSE 347
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + A LR+ GG M + +++G +
Sbjct: 348 CKRFGKAYN--LRSVAVYGGGSMWEQAKALQEGAE 380
Score = 38 (18.4 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 187 IAFTGSGKTLVFV 199
+ FT SG L+FV
Sbjct: 495 VEFTSSGSVLLFV 507
>UNIPROTKB|D6RJA6 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524 GO:GO:0005730
EMBL:CH471062 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
UniGene:Hs.406549 HGNC:HGNC:18681 ChiTaRS:DDX46 EMBL:AC006077
EMBL:AC010301 IPI:IPI00967303 SMR:D6RJA6 Ensembl:ENST00000507392
Uniprot:D6RJA6
Length = 471
Score = 235 (87.8 bits), Expect = 4.2e-19, P = 4.2e-19
Identities = 61/183 (33%), Positives = 97/183 (53%)
Query: 57 ELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKG-IQYNDPIKTSW--RAPR 113
EL D ++Y + L+T L + L+ + G I+Y +P + ++ P
Sbjct: 235 ELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGKIEY-EPFRKNFYVEVPE 293
Query: 114 CILSLPDQVHDIIRRNLR-ILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQV 172
++V+ + R + I V+G P S+ + ++ +L+ G +KPTPIQ
Sbjct: 294 LAKMSQEEVN-VFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQT 352
Query: 173 QGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSREL 232
Q IPA +SGRD+IGIA TGSGKT+ F+LP+ ++Q + GEGP +I+ P+REL
Sbjct: 353 QAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS---LEEGEGPIAVIMTPTREL 409
Query: 233 ARQ 235
A Q
Sbjct: 410 ALQ 412
Score = 145 (56.1 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 34/95 (35%), Positives = 54/95 (56%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT+ F+LP+ ++Q + GEGP +I+ P+RELA Q
Sbjct: 360 SGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS---LEEGEGPIAVIMTPTRELALQITKE 416
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + L LR GG +++ + +K+G +
Sbjct: 417 CKKFSKTLG--LRVVCVYGGTGISEQIAELKRGAE 449
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 233 (87.1 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 56/133 (42%), Positives = 78/133 (58%)
Query: 119 PDQVHDIIRRNLRILVEGDDV-PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA 177
P +V D +RR I V G DV P +F P+ ++ L + +PTPIQ QG P
Sbjct: 67 PYEV-DELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPL 125
Query: 178 ALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQT 236
ALSGRD++GIA TGSGKTL ++LP ++ Q P+L G+GP L++ P+RELA+Q
Sbjct: 126 ALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ----PYLERGDGPICLVLAPTRELAQQV 181
Query: 237 HDIIQYY--CAAL 247
+ Y C+ L
Sbjct: 182 QQVADDYGKCSRL 194
Score = 155 (59.6 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 36/98 (36%), Positives = 58/98 (59%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHD 64
+ RD++GIA TGSGKTL ++LP ++ Q P+L G+GP L++ P+RELA+Q
Sbjct: 128 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQ----PYLERGDGPICLVLAPTRELAQQVQQ 183
Query: 65 IIQYY--CAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ Y C+ L TC+ GG P + +++G++
Sbjct: 184 VADDYGKCSRLK---STCI-YGGAPKGPQIRDLERGVE 217
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 233 (87.1 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 56/133 (42%), Positives = 78/133 (58%)
Query: 119 PDQVHDIIRRNLRILVEGDDV-PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA 177
P +V D +RR I V G DV P +F P+ ++ L + +PTPIQ QG P
Sbjct: 67 PYEV-DELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPL 125
Query: 178 ALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQT 236
ALSGRD++GIA TGSGKTL ++LP ++ Q P+L G+GP L++ P+RELA+Q
Sbjct: 126 ALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ----PYLERGDGPICLVLAPTRELAQQV 181
Query: 237 HDIIQYY--CAAL 247
+ Y C+ L
Sbjct: 182 QQVADDYGKCSRL 194
Score = 155 (59.6 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 36/98 (36%), Positives = 58/98 (59%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHD 64
+ RD++GIA TGSGKTL ++LP ++ Q P+L G+GP L++ P+RELA+Q
Sbjct: 128 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQ----PYLERGDGPICLVLAPTRELAQQVQQ 183
Query: 65 IIQYY--CAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ Y C+ L TC+ GG P + +++G++
Sbjct: 184 VADDYGKCSRLK---STCI-YGGAPKGPQIRDLERGVE 217
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 233 (87.1 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 56/133 (42%), Positives = 78/133 (58%)
Query: 119 PDQVHDIIRRNLRILVEGDDV-PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA 177
P +V D +RR I V G DV P +F P+ ++ L + +PTPIQ QG P
Sbjct: 67 PYEV-DELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPL 125
Query: 178 ALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQT 236
ALSGRD++GIA TGSGKTL ++LP ++ Q P+L G+GP L++ P+RELA+Q
Sbjct: 126 ALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ----PYLERGDGPICLVLAPTRELAQQV 181
Query: 237 HDIIQYY--CAAL 247
+ Y C+ L
Sbjct: 182 QQVADDYGKCSRL 194
Score = 155 (59.6 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 36/98 (36%), Positives = 58/98 (59%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHD 64
+ RD++GIA TGSGKTL ++LP ++ Q P+L G+GP L++ P+RELA+Q
Sbjct: 128 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQ----PYLERGDGPICLVLAPTRELAQQVQQ 183
Query: 65 IIQYY--CAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ Y C+ L TC+ GG P + +++G++
Sbjct: 184 VADDYGKCSRLK---STCI-YGGAPKGPQIRDLERGVE 217
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 233 (87.1 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 56/133 (42%), Positives = 78/133 (58%)
Query: 119 PDQVHDIIRRNLRILVEGDDV-PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA 177
P +V D +RR I V G DV P +F P+ ++ L + +PTPIQ QG P
Sbjct: 67 PYEV-DELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPL 125
Query: 178 ALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQT 236
ALSGRD++GIA TGSGKTL ++LP ++ Q P+L G+GP L++ P+RELA+Q
Sbjct: 126 ALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ----PYLERGDGPICLVLAPTRELAQQV 181
Query: 237 HDIIQYY--CAAL 247
+ Y C+ L
Sbjct: 182 QQVADDYGKCSRL 194
Score = 155 (59.6 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 36/98 (36%), Positives = 58/98 (59%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHD 64
+ RD++GIA TGSGKTL ++LP ++ Q P+L G+GP L++ P+RELA+Q
Sbjct: 128 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQ----PYLERGDGPICLVLAPTRELAQQVQQ 183
Query: 65 IIQYY--CAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ Y C+ L TC+ GG P + +++G++
Sbjct: 184 VADDYGKCSRLK---STCI-YGGAPKGPQIRDLERGVE 217
>UNIPROTKB|J3QRQ7 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0001701
"in utero embryonic development" evidence=IEA] [GO:0003712
"transcription cofactor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0005516
"calmodulin binding" evidence=IEA] [GO:0007623 "circadian rhythm"
evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA]
[GO:0045069 "regulation of viral genome replication" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 InterPro:IPR014014 PROSITE:PS51195 HGNC:HGNC:2746
ChiTaRS:DDX5 Ensembl:ENST00000577922 Uniprot:J3QRQ7
Length = 212
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 49/126 (38%), Positives = 72/126 (57%)
Query: 127 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIG 186
RR+ I V G + P +F P +++ + + +PT IQ QG P ALSG D++G
Sbjct: 77 RRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVG 136
Query: 187 IAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQYYCA 245
+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q + YC
Sbjct: 137 VAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQVAAEYCR 192
Query: 246 ALPIGS 251
A + S
Sbjct: 193 ACRLKS 198
Score = 151 (58.2 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 34/80 (42%), Positives = 49/80 (61%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQ 67
D++G+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q +
Sbjct: 133 DMVGVAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQVAA 188
Query: 68 YYCAALPIPLRTCLAIGGVP 87
YC A + TC+ GG P
Sbjct: 189 EYCRACRLK-STCI-YGGAP 206
>DICTYBASE|DDB_G0277857 [details] [associations]
symbol:helB2 "putative U5 small nuclear
ribonucleoprotein" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0277857 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006397
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 GO:GO:0000375 HSSP:P09052 EMBL:X81824
RefSeq:XP_642321.1 ProteinModelPortal:Q54Y81 STRING:Q54Y81
EnsemblProtists:DDB0219950 GeneID:8621527 KEGG:ddi:DDB_G0277857
OMA:DRYRDND Uniprot:Q54Y81
Length = 834
Score = 234 (87.4 bits), Expect = 1.8e-18, P = 1.8e-18
Identities = 49/138 (35%), Positives = 81/138 (58%)
Query: 98 GIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVR 157
G Q ++ T W + + + S+ + I + + I +G P +++ LP ++
Sbjct: 368 GKQISELPDTHW-SKKPLKSMTKRDWHIFKEDFNISTKGGIAPNPIRTWQESNLPREILE 426
Query: 158 ALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP 217
A+ G +KP+PIQ+Q IP +L+GRDI+GIA TGSGKT FV+P+L++ +Q
Sbjct: 427 AIRQLGYEKPSPIQMQSIPISLTGRDILGIAETGSGKTCAFVIPMLIYISKQPRLTKDTE 486
Query: 218 GEGPYGLIICPSRELARQ 235
+GPY L++ P+REL +Q
Sbjct: 487 ADGPYALVMAPTRELVQQ 504
Score = 143 (55.4 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 36/108 (33%), Positives = 54/108 (50%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RDI+GIA TGSGKT FV+P+L++ +Q +GPY L++ P+REL +Q +
Sbjct: 451 RDILGIAETGSGKTCAFVIPMLIYISKQPRLTKDTEADGPYALVMAPTRELVQQIEKETR 510
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCI 115
+ A R +GG + + KG + I T R C+
Sbjct: 511 NF--AQHFGFRVVSLVGGQSIEDQAYQVSKGCEII--IATPGRLNDCL 554
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 233 (87.1 bits), Expect = 1.9e-18, P = 1.9e-18
Identities = 56/133 (42%), Positives = 78/133 (58%)
Query: 119 PDQVHDIIRRNLRILVEGDDV-PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA 177
P +V D +RR I V G DV P +F P+ ++ L + +PTPIQ QG P
Sbjct: 146 PYEV-DELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPL 204
Query: 178 ALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQT 236
ALSGRD++GIA TGSGKTL ++LP ++ Q P+L G+GP L++ P+RELA+Q
Sbjct: 205 ALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ----PYLERGDGPICLVLAPTRELAQQV 260
Query: 237 HDIIQYY--CAAL 247
+ Y C+ L
Sbjct: 261 QQVADDYGKCSRL 273
Score = 155 (59.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 36/98 (36%), Positives = 58/98 (59%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHD 64
+ RD++GIA TGSGKTL ++LP ++ Q P+L G+GP L++ P+RELA+Q
Sbjct: 207 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQ----PYLERGDGPICLVLAPTRELAQQVQQ 262
Query: 65 IIQYY--CAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ Y C+ L TC+ GG P + +++G++
Sbjct: 263 VADDYGKCSRLK---STCI-YGGAPKGPQIRDLERGVE 296
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 233 (87.1 bits), Expect = 1.9e-18, P = 1.9e-18
Identities = 56/133 (42%), Positives = 78/133 (58%)
Query: 119 PDQVHDIIRRNLRILVEGDDV-PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA 177
P +V D +RR I V G DV P +F P+ ++ L + +PTPIQ QG P
Sbjct: 146 PYEV-DELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPL 204
Query: 178 ALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQT 236
ALSGRD++GIA TGSGKTL ++LP ++ Q P+L G+GP L++ P+RELA+Q
Sbjct: 205 ALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ----PYLERGDGPICLVLAPTRELAQQV 260
Query: 237 HDIIQYY--CAAL 247
+ Y C+ L
Sbjct: 261 QQVADDYGKCSRL 273
Score = 155 (59.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 36/98 (36%), Positives = 58/98 (59%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHD 64
+ RD++GIA TGSGKTL ++LP ++ Q P+L G+GP L++ P+RELA+Q
Sbjct: 207 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQ----PYLERGDGPICLVLAPTRELAQQVQQ 262
Query: 65 IIQYY--CAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ Y C+ L TC+ GG P + +++G++
Sbjct: 263 VADDYGKCSRLK---STCI-YGGAPKGPQIRDLERGVE 296
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 233 (87.1 bits), Expect = 1.9e-18, P = 1.9e-18
Identities = 56/133 (42%), Positives = 78/133 (58%)
Query: 119 PDQVHDIIRRNLRILVEGDDV-PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA 177
P +V D +RR I V G DV P +F P+ ++ L + +PTPIQ QG P
Sbjct: 148 PYEV-DELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPL 206
Query: 178 ALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQT 236
ALSGRD++GIA TGSGKTL ++LP ++ Q P+L G+GP L++ P+RELA+Q
Sbjct: 207 ALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ----PYLERGDGPICLVLAPTRELAQQV 262
Query: 237 HDIIQYY--CAAL 247
+ Y C+ L
Sbjct: 263 QQVADDYGKCSRL 275
Score = 155 (59.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 36/98 (36%), Positives = 58/98 (59%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHD 64
+ RD++GIA TGSGKTL ++LP ++ Q P+L G+GP L++ P+RELA+Q
Sbjct: 209 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQ----PYLERGDGPICLVLAPTRELAQQVQQ 264
Query: 65 IIQYY--CAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ Y C+ L TC+ GG P + +++G++
Sbjct: 265 VADDYGKCSRLK---STCI-YGGAPKGPQIRDLERGVE 298
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 233 (87.1 bits), Expect = 1.9e-18, P = 1.9e-18
Identities = 56/133 (42%), Positives = 78/133 (58%)
Query: 119 PDQVHDIIRRNLRILVEGDDV-PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA 177
P +V D +RR I V G DV P +F P+ ++ L + +PTPIQ QG P
Sbjct: 148 PYEV-DELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPL 206
Query: 178 ALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQT 236
ALSGRD++GIA TGSGKTL ++LP ++ Q P+L G+GP L++ P+RELA+Q
Sbjct: 207 ALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ----PYLERGDGPICLVLAPTRELAQQV 262
Query: 237 HDIIQYY--CAAL 247
+ Y C+ L
Sbjct: 263 QQVADDYGKCSRL 275
Score = 155 (59.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 36/98 (36%), Positives = 58/98 (59%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHD 64
+ RD++GIA TGSGKTL ++LP ++ Q P+L G+GP L++ P+RELA+Q
Sbjct: 209 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQ----PYLERGDGPICLVLAPTRELAQQVQQ 264
Query: 65 IIQYY--CAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ Y C+ L TC+ GG P + +++G++
Sbjct: 265 VADDYGKCSRLK---STCI-YGGAPKGPQIRDLERGVE 298
>UNIPROTKB|Q7L014 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
Uniprot:Q7L014
Length = 1031
Score = 235 (87.8 bits), Expect = 2.0e-18, P = 2.0e-18
Identities = 61/183 (33%), Positives = 97/183 (53%)
Query: 57 ELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKG-IQYNDPIKTSW--RAPR 113
EL D ++Y + L+T L + L+ + G I+Y +P + ++ P
Sbjct: 283 ELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGKIEY-EPFRKNFYVEVPE 341
Query: 114 CILSLPDQVHDIIRRNLR-ILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQV 172
++V+ + R + I V+G P S+ + ++ +L+ G +KPTPIQ
Sbjct: 342 LAKMSQEEVN-VFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQT 400
Query: 173 QGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSREL 232
Q IPA +SGRD+IGIA TGSGKT+ F+LP+ ++Q + GEGP +I+ P+REL
Sbjct: 401 QAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS---LEEGEGPIAVIMTPTREL 457
Query: 233 ARQ 235
A Q
Sbjct: 458 ALQ 460
Score = 145 (56.1 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 34/95 (35%), Positives = 54/95 (56%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT+ F+LP+ ++Q + GEGP +I+ P+RELA Q
Sbjct: 408 SGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS---LEEGEGPIAVIMTPTRELALQITKE 464
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + L LR GG +++ + +K+G +
Sbjct: 465 CKKFSKTLG--LRVVCVYGGTGISEQIAELKRGAE 497
>UNIPROTKB|F1PK90 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
Length = 1032
Score = 235 (87.8 bits), Expect = 2.0e-18, P = 2.0e-18
Identities = 61/183 (33%), Positives = 97/183 (53%)
Query: 57 ELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKG-IQYNDPIKTSW--RAPR 113
EL D ++Y + L+T L + L+ + G I+Y +P + ++ P
Sbjct: 283 ELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGKIEY-EPFRKNFYVEVPE 341
Query: 114 CILSLPDQVHDIIRRNLR-ILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQV 172
++V+ + R + I V+G P S+ + ++ +L+ G +KPTPIQ
Sbjct: 342 LAKMSQEEVN-VFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQT 400
Query: 173 QGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSREL 232
Q IPA +SGRD+IGIA TGSGKT+ F+LP+ ++Q + GEGP +I+ P+REL
Sbjct: 401 QAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS---LEEGEGPIAVIMTPTREL 457
Query: 233 ARQ 235
A Q
Sbjct: 458 ALQ 460
Score = 145 (56.1 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 34/95 (35%), Positives = 54/95 (56%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT+ F+LP+ ++Q + GEGP +I+ P+RELA Q
Sbjct: 408 SGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS---LEEGEGPIAVIMTPTRELALQITKE 464
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + L LR GG +++ + +K+G +
Sbjct: 465 CKKFSKTLG--LRVVCVYGGTGISEQIAELKRGAE 497
>UNIPROTKB|I3LR20 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
Length = 1032
Score = 235 (87.8 bits), Expect = 2.0e-18, P = 2.0e-18
Identities = 61/183 (33%), Positives = 97/183 (53%)
Query: 57 ELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKG-IQYNDPIKTSW--RAPR 113
EL D ++Y + L+T L + L+ + G I+Y +P + ++ P
Sbjct: 283 ELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGKIEY-EPFRKNFYVEVPE 341
Query: 114 CILSLPDQVHDIIRRNLR-ILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQV 172
++V+ + R + I V+G P S+ + ++ +L+ G +KPTPIQ
Sbjct: 342 LAKMSQEEVN-VFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQT 400
Query: 173 QGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSREL 232
Q IPA +SGRD+IGIA TGSGKT+ F+LP+ ++Q + GEGP +I+ P+REL
Sbjct: 401 QAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS---LEEGEGPIAVIMTPTREL 457
Query: 233 ARQ 235
A Q
Sbjct: 458 ALQ 460
Score = 145 (56.1 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 34/95 (35%), Positives = 54/95 (56%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT+ F+LP+ ++Q + GEGP +I+ P+RELA Q
Sbjct: 408 SGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS---LEEGEGPIAVIMTPTRELALQITKE 464
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + L LR GG +++ + +K+G +
Sbjct: 465 CKKFSKTLG--LRVVCVYGGTGISEQIAELKRGAE 497
>MGI|MGI:1920895 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
Length = 1032
Score = 235 (87.8 bits), Expect = 2.0e-18, P = 2.0e-18
Identities = 61/183 (33%), Positives = 97/183 (53%)
Query: 57 ELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKG-IQYNDPIKTSW--RAPR 113
EL D ++Y + L+T L + L+ + G I+Y +P + ++ P
Sbjct: 283 ELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGKIEY-EPFRKNFYVEVPE 341
Query: 114 CILSLPDQVHDIIRRNLR-ILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQV 172
++V+ + R + I V+G P S+ + ++ +L+ G +KPTPIQ
Sbjct: 342 LAKMSQEEVN-VFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQT 400
Query: 173 QGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSREL 232
Q IPA +SGRD+IGIA TGSGKT+ F+LP+ ++Q + GEGP +I+ P+REL
Sbjct: 401 QAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS---LEEGEGPIAVIMTPTREL 457
Query: 233 ARQ 235
A Q
Sbjct: 458 ALQ 460
Score = 145 (56.1 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 34/95 (35%), Positives = 54/95 (56%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT+ F+LP+ ++Q + GEGP +I+ P+RELA Q
Sbjct: 408 SGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS---LEEGEGPIAVIMTPTRELALQITKE 464
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + L LR GG +++ + +K+G +
Sbjct: 465 CKKFSKTLG--LRVVCVYGGTGISEQIAELKRGAE 497
>RGD|708480 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 235 (87.8 bits), Expect = 2.0e-18, P = 2.0e-18
Identities = 61/183 (33%), Positives = 97/183 (53%)
Query: 57 ELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKG-IQYNDPIKTSW--RAPR 113
EL D ++Y + L+T L + L+ + G I+Y +P + ++ P
Sbjct: 283 ELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGKIEY-EPFRKNFYVEVPE 341
Query: 114 CILSLPDQVHDIIRRNLR-ILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQV 172
++V+ + R + I V+G P S+ + ++ +L+ G +KPTPIQ
Sbjct: 342 LAKMSQEEVN-VFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQT 400
Query: 173 QGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSREL 232
Q IPA +SGRD+IGIA TGSGKT+ F+LP+ ++Q + GEGP +I+ P+REL
Sbjct: 401 QAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS---LEEGEGPIAVIMTPTREL 457
Query: 233 ARQ 235
A Q
Sbjct: 458 ALQ 460
Score = 145 (56.1 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 34/95 (35%), Positives = 54/95 (56%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT+ F+LP+ ++Q + GEGP +I+ P+RELA Q
Sbjct: 408 SGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS---LEEGEGPIAVIMTPTRELALQITKE 464
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + L LR GG +++ + +K+G +
Sbjct: 465 CKKFSKTLG--LRVVCVYGGTGISEQIAELKRGAE 497
>UNIPROTKB|Q62780 [details] [associations]
symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 235 (87.8 bits), Expect = 2.0e-18, P = 2.0e-18
Identities = 61/183 (33%), Positives = 97/183 (53%)
Query: 57 ELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKG-IQYNDPIKTSW--RAPR 113
EL D ++Y + L+T L + L+ + G I+Y +P + ++ P
Sbjct: 283 ELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGKIEY-EPFRKNFYVEVPE 341
Query: 114 CILSLPDQVHDIIRRNLR-ILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQV 172
++V+ + R + I V+G P S+ + ++ +L+ G +KPTPIQ
Sbjct: 342 LAKMSQEEVN-VFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQT 400
Query: 173 QGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSREL 232
Q IPA +SGRD+IGIA TGSGKT+ F+LP+ ++Q + GEGP +I+ P+REL
Sbjct: 401 QAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS---LEEGEGPIAVIMTPTREL 457
Query: 233 ARQ 235
A Q
Sbjct: 458 ALQ 460
Score = 145 (56.1 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 34/95 (35%), Positives = 54/95 (56%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT+ F+LP+ ++Q + GEGP +I+ P+RELA Q
Sbjct: 408 SGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS---LEEGEGPIAVIMTPTRELALQITKE 464
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + L LR GG +++ + +K+G +
Sbjct: 465 CKKFSKTLG--LRVVCVYGGTGISEQIAELKRGAE 497
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 229 (85.7 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 53/133 (39%), Positives = 78/133 (58%)
Query: 119 PDQVHDIIRRNLRILVEG-DDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA 177
P +V ++ RR I + G + P +F P+ ++ AL + +PTPIQ QG P
Sbjct: 65 PYEVEEL-RRKKEITIRGMEGCPKPVFAFHQCSFPQYVMDALMDQNFTEPTPIQCQGFPL 123
Query: 178 ALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQT 236
ALSGRD++GIA TGSGKTL ++LP ++ Q P+L G+GP L++ P+RELA+Q
Sbjct: 124 ALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ----PYLERGDGPICLVLAPTRELAQQV 179
Query: 237 HDIIQYY--CAAL 247
+ Y C+ L
Sbjct: 180 QQVADDYGKCSRL 192
Score = 155 (59.6 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 36/98 (36%), Positives = 58/98 (59%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHD 64
+ RD++GIA TGSGKTL ++LP ++ Q P+L G+GP L++ P+RELA+Q
Sbjct: 126 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQ----PYLERGDGPICLVLAPTRELAQQVQQ 181
Query: 65 IIQYY--CAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ Y C+ L TC+ GG P + +++G++
Sbjct: 182 VADDYGKCSRLK---STCI-YGGAPKGPQIRDLERGVE 215
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 229 (85.7 bits), Expect = 2.6e-18, P = 2.6e-18
Identities = 49/115 (42%), Positives = 74/115 (64%)
Query: 121 QVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 180
+V +I ++ ++EG++VP S + P+ ++++L+ I PTPIQ+QG P ALS
Sbjct: 90 EVKEIRDKHKITILEGENVPKPVVSINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALS 149
Query: 181 GRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQ 235
G+D+IG A TGSGKTL F+LP + L Q L + G+GP L++ P+RELA Q
Sbjct: 150 GKDMIGKAETGSGKTLAFILPAFVHILAQPN-LKY--GDGPIVLVLAPTRELAEQ 201
Score = 150 (57.9 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 46/152 (30%), Positives = 80/152 (52%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH-D 64
+ +D+IG A TGSGKTL F+LP + L Q L + G+GP L++ P+RELA Q +
Sbjct: 149 SGKDMIGKAETGSGKTLAFILPAFVHILAQPN-LKY--GDGPIVLVLAPTRELAEQIRQE 205
Query: 65 IIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQ-VH 123
I++ + +R A GGVP + + +K+G+ I + P ++ L +Q V
Sbjct: 206 CIKFSTES---KIRNTCAYGGVPKSGQIYALKQGVH----ILIA--CPGRLIDLLEQNVT 256
Query: 124 DIIRRNLRILVEGDDVPPACCSFRLMKLPESL 155
+++R +L E D + ++ K+ + +
Sbjct: 257 NLMRVTYLVLDEADKMLDMGFELQIRKIVDQI 288
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 229 (85.7 bits), Expect = 2.6e-18, P = 2.6e-18
Identities = 49/115 (42%), Positives = 74/115 (64%)
Query: 121 QVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALS 180
+V +I ++ ++EG++VP S + P+ ++++L+ I PTPIQ+QG P ALS
Sbjct: 90 EVKEIRDKHKITILEGENVPKPVVSINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALS 149
Query: 181 GRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQ 235
G+D+IG A TGSGKTL F+LP + L Q L + G+GP L++ P+RELA Q
Sbjct: 150 GKDMIGKAETGSGKTLAFILPAFVHILAQPN-LKY--GDGPIVLVLAPTRELAEQ 201
Score = 150 (57.9 bits), Expect = 4.4e-08, P = 4.4e-08
Identities = 46/152 (30%), Positives = 80/152 (52%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH-D 64
+ +D+IG A TGSGKTL F+LP + L Q L + G+GP L++ P+RELA Q +
Sbjct: 149 SGKDMIGKAETGSGKTLAFILPAFVHILAQPN-LKY--GDGPIVLVLAPTRELAEQIRQE 205
Query: 65 IIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQ-VH 123
I++ + +R A GGVP + + +K+G+ I + P ++ L +Q V
Sbjct: 206 CIKFSTES---KIRNTCAYGGVPKSGQIYALKQGVH----ILIA--CPGRLIDLLEQNVT 256
Query: 124 DIIRRNLRILVEGDDVPPACCSFRLMKLPESL 155
+++R +L E D + ++ K+ + +
Sbjct: 257 NLMRVTYLVLDEADKMLDMGFELQIRKIVDQI 288
>UNIPROTKB|F1MX40 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
Uniprot:F1MX40
Length = 1032
Score = 233 (87.1 bits), Expect = 3.2e-18, P = 3.2e-18
Identities = 61/183 (33%), Positives = 97/183 (53%)
Query: 57 ELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKG-IQYNDPIKTSW--RAPR 113
EL D ++Y + L+T L + L+ + G I+Y +P + ++ P
Sbjct: 283 ELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGKIEY-EPFRKNFYVEVPE 341
Query: 114 CILSLPDQVHDIIRRNLR-ILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQV 172
++V+ + R + I V+G P S+ + ++ +L+ G +KPTPIQ
Sbjct: 342 LAKMSLEEVN-VFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQT 400
Query: 173 QGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSREL 232
Q IPA +SGRD+IGIA TGSGKT+ F+LP+ ++Q + GEGP +I+ P+REL
Sbjct: 401 QAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS---LEEGEGPIAVIMTPTREL 457
Query: 233 ARQ 235
A Q
Sbjct: 458 ALQ 460
Score = 145 (56.1 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 34/95 (35%), Positives = 54/95 (56%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT+ F+LP+ ++Q + GEGP +I+ P+RELA Q
Sbjct: 408 SGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRS---LEEGEGPIAVIMTPTRELALQITKE 464
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + L LR GG +++ + +K+G +
Sbjct: 465 CKKFSKTLG--LRVVCVYGGTGISEQIAELKRGAE 497
>GENEDB_PFALCIPARUM|PFE0925c [details] [associations]
symbol:PFE0925c "snrnp protein, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
HSSP:Q58083 HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 233 (87.1 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 53/122 (43%), Positives = 75/122 (61%)
Query: 118 LPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA 177
+ D+ I R + I ++G VPP + L L++A++ +KPTPIQ+Q IP
Sbjct: 672 MTDRDWRIFREDNEIYIKGGVVPPPIRKWEESNLSNDLLKAIKKAKYEKPTPIQMQAIPI 731
Query: 178 ALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGE-GPYGLIICPSRELARQT 236
AL RD+IGIA TGSGKT FVLP+L + ++Q L + + GPY L+I PSRELA Q
Sbjct: 732 ALEMRDLIGIAETGSGKTAAFVLPMLSY-VKQLPPLTYETSQDGPYALVIAPSRELAIQI 790
Query: 237 HD 238
++
Sbjct: 791 YE 792
Score = 154 (59.3 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 45/132 (34%), Positives = 70/132 (53%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGE-GPYGLIICPSRELARQTHDII 66
RD+IGIA TGSGKT FVLP+L + ++Q L + + GPY L+I PSRELA Q ++
Sbjct: 736 RDLIGIAETGSGKTAAFVLPMLSY-VKQLPPLTYETSQDGPYALVIAPSRELAIQIYEET 794
Query: 67 QYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDII 126
+ + RT +GG +++G++ I T R C+ ++ + ++
Sbjct: 795 NKFASYCSC--RTVAVVGGRNAEAQAFELRRGVEI--VIGTPGRLQDCL----EKAYTVL 846
Query: 127 RR-NLRILVEGD 137
+ N IL E D
Sbjct: 847 NQCNYVILDEAD 858
>UNIPROTKB|Q8I0W7 [details] [associations]
symbol:PFE0925c "Snrnp protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 233 (87.1 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 53/122 (43%), Positives = 75/122 (61%)
Query: 118 LPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA 177
+ D+ I R + I ++G VPP + L L++A++ +KPTPIQ+Q IP
Sbjct: 672 MTDRDWRIFREDNEIYIKGGVVPPPIRKWEESNLSNDLLKAIKKAKYEKPTPIQMQAIPI 731
Query: 178 ALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGE-GPYGLIICPSRELARQT 236
AL RD+IGIA TGSGKT FVLP+L + ++Q L + + GPY L+I PSRELA Q
Sbjct: 732 ALEMRDLIGIAETGSGKTAAFVLPMLSY-VKQLPPLTYETSQDGPYALVIAPSRELAIQI 790
Query: 237 HD 238
++
Sbjct: 791 YE 792
Score = 154 (59.3 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 45/132 (34%), Positives = 70/132 (53%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGE-GPYGLIICPSRELARQTHDII 66
RD+IGIA TGSGKT FVLP+L + ++Q L + + GPY L+I PSRELA Q ++
Sbjct: 736 RDLIGIAETGSGKTAAFVLPMLSY-VKQLPPLTYETSQDGPYALVIAPSRELAIQIYEET 794
Query: 67 QYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDII 126
+ + RT +GG +++G++ I T R C+ ++ + ++
Sbjct: 795 NKFASYCSC--RTVAVVGGRNAEAQAFELRRGVEI--VIGTPGRLQDCL----EKAYTVL 846
Query: 127 RR-NLRILVEGD 137
+ N IL E D
Sbjct: 847 NQCNYVILDEAD 858
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 227 (85.0 bits), Expect = 5.0e-18, P = 5.0e-18
Identities = 52/113 (46%), Positives = 71/113 (62%)
Query: 124 DIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRD 183
D R+ + V+G DVP +F P+ ++ ++A+G +KPT IQ QG P ALSGRD
Sbjct: 120 DEFRKKCEMTVQGRDVPRPVETFDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMALSGRD 179
Query: 184 IIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGLIICPSRELARQ 235
++GIA TGSGKTL + LP ++ Q P L PG+GP LI+ P+RELA Q
Sbjct: 180 VVGIAETGSGKTLSYCLPAIVHINAQ----PLLAPGDGPIVLILAPTRELAVQ 228
Score = 148 (57.2 bits), Expect = 8.5e-08, P = 8.5e-08
Identities = 38/96 (39%), Positives = 55/96 (57%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGLIICPSRELARQTHD 64
+ RD++GIA TGSGKTL + LP ++ Q P L PG+GP LI+ P+RELA Q
Sbjct: 176 SGRDVVGIAETGSGKTLSYCLPAIVHINAQ----PLLAPGDGPIVLILAPTRELAVQIQA 231
Query: 65 IIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
I + + I TC+ GGVP + + +G++
Sbjct: 232 EISKFGKSSRIR-NTCV-YGGVPKGPQIRDLSRGVE 265
>GENEDB_PFALCIPARUM|PFE0430w [details] [associations]
symbol:PFE0430w "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 233 (87.1 bits), Expect = 5.3e-18, P = 5.3e-18
Identities = 62/165 (37%), Positives = 91/165 (55%)
Query: 88 MNQSL-DVIKKGIQYNDPIKTS-WRAPRCILSLPDQVHDIIRRNL-RILVEGDDVPPACC 144
MN+ L +V I Y PIK + + + I ++ D D+ R+N I+V G + P
Sbjct: 665 MNKKLLEVNHDEIDYI-PIKKNIYVQVKEITNMKDSDVDMFRKNNGNIIVRGKNCPRPVQ 723
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
F LP +++ LE K KK IQ+Q IPA + GRD+I IA TGSGKTL ++ P++
Sbjct: 724 YFYQCGLPSKILQILEKKNFKKMYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLFPVIR 783
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPI 249
L QE P +GP +I+ P+REL+ Q + + YC A+ I
Sbjct: 784 HVLHQE---PLRNNDGPISIILTPTRELSIQVKNEAKIYCKAVNI 825
Score = 165 (63.1 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 38/94 (40%), Positives = 58/94 (61%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD+I IA TGSGKTL ++ P++ L QE P +GP +I+ P+REL+ Q + +
Sbjct: 761 RDVIAIAETGSGKTLSYLFPVIRHVLHQE---PLRNNDGPISIILTPTRELSIQVKNEAK 817
Query: 68 YYCAALPIPLRTCLAI-GGVPMNQSLDVIKKGIQ 100
YC A+ I + LA+ GG + + L V+KKG++
Sbjct: 818 IYCKAVNIEI---LAVYGGSNIARQLKVLKKGVE 848
>UNIPROTKB|Q8I416 [details] [associations]
symbol:PFE0430w "ATP-dependent RNA Helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 233 (87.1 bits), Expect = 5.3e-18, P = 5.3e-18
Identities = 62/165 (37%), Positives = 91/165 (55%)
Query: 88 MNQSL-DVIKKGIQYNDPIKTS-WRAPRCILSLPDQVHDIIRRNL-RILVEGDDVPPACC 144
MN+ L +V I Y PIK + + + I ++ D D+ R+N I+V G + P
Sbjct: 665 MNKKLLEVNHDEIDYI-PIKKNIYVQVKEITNMKDSDVDMFRKNNGNIIVRGKNCPRPVQ 723
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
F LP +++ LE K KK IQ+Q IPA + GRD+I IA TGSGKTL ++ P++
Sbjct: 724 YFYQCGLPSKILQILEKKNFKKMYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLFPVIR 783
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPI 249
L QE P +GP +I+ P+REL+ Q + + YC A+ I
Sbjct: 784 HVLHQE---PLRNNDGPISIILTPTRELSIQVKNEAKIYCKAVNI 825
Score = 165 (63.1 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 38/94 (40%), Positives = 58/94 (61%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD+I IA TGSGKTL ++ P++ L QE P +GP +I+ P+REL+ Q + +
Sbjct: 761 RDVIAIAETGSGKTLSYLFPVIRHVLHQE---PLRNNDGPISIILTPTRELSIQVKNEAK 817
Query: 68 YYCAALPIPLRTCLAI-GGVPMNQSLDVIKKGIQ 100
YC A+ I + LA+ GG + + L V+KKG++
Sbjct: 818 IYCKAVNIEI---LAVYGGSNIARQLKVLKKGVE 848
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 227 (85.0 bits), Expect = 6.0e-18, P = 6.0e-18
Identities = 50/129 (38%), Positives = 73/129 (56%)
Query: 124 DIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRD 183
D RR+ I V G + P +F P +++ + + +PT IQ QG P ALSG D
Sbjct: 74 DTYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLD 133
Query: 184 IIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQY 242
++G+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q +
Sbjct: 134 MVGVAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQVAAE 189
Query: 243 YCAALPIGS 251
YC A + S
Sbjct: 190 YCRACRLKS 198
Score = 162 (62.1 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQ 67
D++G+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q +
Sbjct: 133 DMVGVAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQVAA 188
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
YC A + TC+ GG P + +++G++
Sbjct: 189 EYCRACRLK-STCI-YGGAPKGPQIRDLERGVE 219
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 227 (85.0 bits), Expect = 6.0e-18, P = 6.0e-18
Identities = 50/129 (38%), Positives = 73/129 (56%)
Query: 124 DIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRD 183
D RR+ I V G + P +F P +++ + + +PT IQ QG P ALSG D
Sbjct: 74 DTYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLD 133
Query: 184 IIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQY 242
++G+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q +
Sbjct: 134 MVGVAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQVAAE 189
Query: 243 YCAALPIGS 251
YC A + S
Sbjct: 190 YCRACRLKS 198
Score = 162 (62.1 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQ 67
D++G+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q +
Sbjct: 133 DMVGVAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQVAA 188
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
YC A + TC+ GG P + +++G++
Sbjct: 189 EYCRACRLK-STCI-YGGAPKGPQIRDLERGVE 219
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 225 (84.3 bits), Expect = 6.2e-18, P = 6.2e-18
Identities = 52/110 (47%), Positives = 70/110 (63%)
Query: 128 RNLR-ILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIG 186
R LR I VEG D+P SFR + P+ ++ ++ G +PTPIQ QG P A+ GRD+IG
Sbjct: 82 RKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIG 141
Query: 187 IAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQ 235
IA TGSGKTL ++LP ++ Q P L G+GP L++ P+RELA Q
Sbjct: 142 IAETGSGKTLSYLLPAIVHVNAQ----PMLAHGDGPIVLVLAPTRELAVQ 187
Score = 144 (55.7 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 37/94 (39%), Positives = 55/94 (58%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDII 66
RD+IGIA TGSGKTL ++LP ++ Q P L G+GP L++ P+RELA Q
Sbjct: 137 RDLIGIAETGSGKTLSYLLPAIVHVNAQ----PMLAHGDGPIVLVLAPTRELAVQIQQEA 192
Query: 67 QYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ ++ I TC+ GGVP + ++KG++
Sbjct: 193 SKFGSSSKIKT-TCI-YGGVPKGPQVRDLQKGVE 224
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 230 (86.0 bits), Expect = 6.8e-18, P = 6.8e-18
Identities = 63/183 (34%), Positives = 95/183 (51%)
Query: 57 ELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIK-KGIQYNDPIKTSW--RAPR 113
EL D ++Y + L+T L + L+ + + IQY +P + ++ P
Sbjct: 268 ELMENDQDAMEYSSEEEEVDLQTALTGFQTKQRKVLEPVDHQKIQY-EPFRKNFYVEVPE 326
Query: 114 CILSLPDQVHDIIRRNLR-ILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQV 172
P++V + R L I V+G P ++ + ++ AL+ +KPTPIQ
Sbjct: 327 LARMSPEEVSEY-RLELEGISVKGKGCPKPIKTWVQCGISMKVLNALKKHNYEKPTPIQA 385
Query: 173 QGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSREL 232
Q IPA +SGRD+IGIA TGSGKT+ F+LP+ L+Q P EGP +I+ P+REL
Sbjct: 386 QAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQR---PVGEAEGPLAVIMTPTREL 442
Query: 233 ARQ 235
A Q
Sbjct: 443 ALQ 445
Score = 147 (56.8 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 35/95 (36%), Positives = 54/95 (56%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT+ F+LP+ L+Q P EGP +I+ P+RELA Q
Sbjct: 393 SGRDLIGIAKTGSGKTIAFLLPMFRHILDQR---PVGEAEGPLAVIMTPTRELALQITKE 449
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + +L LR GG +++ + +K+G +
Sbjct: 450 CKKFSKSLA--LRVVCVYGGTGISEQIAELKRGAE 482
>CGD|CAL0005725 [details] [associations]
symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 229 (85.7 bits), Expect = 6.9e-18, P = 6.9e-18
Identities = 60/156 (38%), Positives = 91/156 (58%)
Query: 90 QSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNL-RILVEGDDVPPACCSFRL 148
QS+D ++ Y + K +R + +L D+ ++IR++L I V+G DVP +
Sbjct: 240 QSIDHSQEN--YQEFRKVFYREAYELSALSDEQVELIRQDLDNIKVKGTDVPRPILKWSH 297
Query: 149 MKLPESLVRALEAK-GIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCL 207
+ LP +L + K +KP+ IQ Q +P LSGRD+IGIA TGSGKTL +VLP+L
Sbjct: 298 LALPTNLSSVIHDKLKFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQ 357
Query: 208 EQETKLPFLPGEGPYGLIICPSRELARQTH-DIIQY 242
+Q+ +GP GLI+ P+RELA Q +I+ +
Sbjct: 358 DQQFSKD---NQGPIGLILSPTRELALQIEKEILNF 390
Score = 162 (62.1 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 39/99 (39%), Positives = 57/99 (57%)
Query: 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT 62
T + RD+IGIA TGSGKTL +VLP+L +Q+ +GP GLI+ P+RELA Q
Sbjct: 327 TILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQFSKD---NQGPIGLILSPTRELALQI 383
Query: 63 H-DIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+I+ + LR C GG + ++ +KKG++
Sbjct: 384 EKEILNF--TKRNNNLRVCCCYGGSSIENQINELKKGVE 420
>UNIPROTKB|Q5ADL0 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 229 (85.7 bits), Expect = 6.9e-18, P = 6.9e-18
Identities = 60/156 (38%), Positives = 91/156 (58%)
Query: 90 QSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNL-RILVEGDDVPPACCSFRL 148
QS+D ++ Y + K +R + +L D+ ++IR++L I V+G DVP +
Sbjct: 240 QSIDHSQEN--YQEFRKVFYREAYELSALSDEQVELIRQDLDNIKVKGTDVPRPILKWSH 297
Query: 149 MKLPESLVRALEAK-GIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCL 207
+ LP +L + K +KP+ IQ Q +P LSGRD+IGIA TGSGKTL +VLP+L
Sbjct: 298 LALPTNLSSVIHDKLKFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPMLRHIQ 357
Query: 208 EQETKLPFLPGEGPYGLIICPSRELARQTH-DIIQY 242
+Q+ +GP GLI+ P+RELA Q +I+ +
Sbjct: 358 DQQFSKD---NQGPIGLILSPTRELALQIEKEILNF 390
Score = 162 (62.1 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 39/99 (39%), Positives = 57/99 (57%)
Query: 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT 62
T + RD+IGIA TGSGKTL +VLP+L +Q+ +GP GLI+ P+RELA Q
Sbjct: 327 TILSGRDVIGIAKTGSGKTLSYVLPMLRHIQDQQFSKD---NQGPIGLILSPTRELALQI 383
Query: 63 H-DIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+I+ + LR C GG + ++ +KKG++
Sbjct: 384 EKEILNF--TKRNNNLRVCCCYGGSSIENQINELKKGVE 420
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 228 (85.3 bits), Expect = 9.6e-18, P = 9.6e-18
Identities = 48/104 (46%), Positives = 65/104 (62%)
Query: 134 VEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSG 193
V G P SF E L+ + +PTPIQ QG+P ALSGRD+IGIA TGSG
Sbjct: 243 VSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSG 302
Query: 194 KTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
KT F+ P+L+ ++Q+ +L PG+GP +I+CP+REL +Q H
Sbjct: 303 KTAAFIWPMLIHIMDQK-ELE--PGDGPIAVIVCPTRELCQQIH 343
Score = 158 (60.7 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 36/95 (37%), Positives = 58/95 (61%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKT F+ P+L+ ++Q+ +L PG+GP +I+CP+REL +Q H
Sbjct: 289 SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQK-ELE--PGDGPIAVIVCPTRELCQQIHAE 345
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + A LR+ GG M + +++G +
Sbjct: 346 CKRFGKAYN--LRSVAVYGGGSMWEQAKALQEGAE 378
Score = 38 (18.4 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 187 IAFTGSGKTLVFV 199
+ FT SG L+FV
Sbjct: 493 VEFTSSGSVLLFV 505
>TAIR|locus:2074899 [details] [associations]
symbol:AT3G09620 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 EMBL:AC016661 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 IPI:IPI00534330
RefSeq:NP_187573.1 UniGene:At.53239 ProteinModelPortal:Q9SF41
SMR:Q9SF41 PaxDb:Q9SF41 PRIDE:Q9SF41 EnsemblPlants:AT3G09620.1
GeneID:820119 KEGG:ath:AT3G09620 KEGG:dosa:Os08t0154200-01
GeneFarm:1024 TAIR:At3g09620 InParanoid:Q9SF41 OMA:RGRYKVL
PhylomeDB:Q9SF41 ArrayExpress:Q9SF41 Genevestigator:Q9SF41
GermOnline:AT3G09620 Uniprot:Q9SF41
Length = 989
Score = 228 (85.3 bits), Expect = 1.0e-17, P = 1.0e-17
Identities = 55/151 (36%), Positives = 80/151 (52%)
Query: 99 IQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRA 158
I+Y K + + I + + R+ L + V G DVP + L ++
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 159 LEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPG 218
L+ +KP PIQ Q +P +SGRD IG+A TGSGKTL FVLP+L +Q P G
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQP---PVEAG 467
Query: 219 EGPYGLIICPSRELARQTHDIIQYYCAALPI 249
+GP GL++ P+REL +Q + I+ + AL I
Sbjct: 468 DGPIGLVMAPTRELVQQIYSDIRKFSKALGI 498
Score = 164 (62.8 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 39/96 (40%), Positives = 58/96 (60%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD IG+A TGSGKTL FVLP+L +Q P G+GP GL++ P+REL +Q +
Sbjct: 432 SGRDCIGVAKTGSGKTLGFVLPMLRHIKDQP---PVEAGDGPIGLVMAPTRELVQQIYSD 488
Query: 66 IQYYCAALPIPLRTCLAI-GGVPMNQSLDVIKKGIQ 100
I+ + AL I C+ + GG + Q + +K+G +
Sbjct: 489 IRKFSKALGI---ICVPVYGGSGVAQQISELKRGTE 521
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 228 (85.3 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 60/183 (32%), Positives = 96/183 (52%)
Query: 57 ELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKG-IQYNDPIKTSW--RAPR 113
EL D ++Y + L+T L + L+ + G I+Y +P + ++ P
Sbjct: 282 ELMENDQDAMEYSSEEEEVDLQTALTGYQTKQRKLLEPVDHGKIEY-EPFRKNFYVEVPE 340
Query: 114 CILSLPDQVHDIIRRNLR-ILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQV 172
++V+ + R + I V+G P ++ + ++ AL+ G +KPTPIQ
Sbjct: 341 LAKMTQEEVN-VYRLEMEGITVKGKGCPKPIKTWVQCGISMKILTALKKHGYEKPTPIQS 399
Query: 173 QGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSREL 232
Q IPA ++GRD+IGIA TGSGKT+ F+LP+ ++Q GEGP +I+ P+REL
Sbjct: 400 QAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRA---LEEGEGPIAVIMTPTREL 456
Query: 233 ARQ 235
A Q
Sbjct: 457 ALQ 459
Score = 149 (57.5 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 35/95 (36%), Positives = 53/95 (55%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
N RD+IGIA TGSGKT+ F+LP+ ++Q GEGP +I+ P+RELA Q
Sbjct: 407 NGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRA---LEEGEGPIAVIMTPTRELALQITKE 463
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + L LR GG +++ + +K+G +
Sbjct: 464 CKKFSKTLG--LRVVCVYGGTGISEQIAELKRGAE 496
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 224 (83.9 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 48/114 (42%), Positives = 68/114 (59%)
Query: 127 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIG 186
RR I V G P +F + P+ ++ L + K+PT IQ QG P ALSGRD++G
Sbjct: 78 RRKREITVRGSGCPKPVTNFHQAQFPQYVMDVLLQQNFKEPTAIQAQGFPLALSGRDMVG 137
Query: 187 IAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDI 239
IA TGSGKTL ++LP ++ Q P+L G+GP L++ P+RELA+Q +
Sbjct: 138 IAQTGSGKTLAYLLPAIVHINHQ----PYLERGDGPICLVLAPTRELAQQVQQV 187
Score = 150 (57.9 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 35/96 (36%), Positives = 57/96 (59%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHD 64
+ RD++GIA TGSGKTL ++LP ++ Q P+L G+GP L++ P+RELA+Q
Sbjct: 131 SGRDMVGIAQTGSGKTLAYLLPAIVHINHQ----PYLERGDGPICLVLAPTRELAQQVQQ 186
Query: 65 IIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ Y + I TC+ GG P + +++G++
Sbjct: 187 VAFDYGKSSRIK-STCV-YGGAPKGPQIRDLERGVE 220
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 223 (83.6 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 49/126 (38%), Positives = 72/126 (57%)
Query: 127 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIG 186
RR+ I V G + P +F P +++ + + +PT IQ QG P ALSG D++G
Sbjct: 77 RRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVG 136
Query: 187 IAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQYYCA 245
+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q + YC
Sbjct: 137 VAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQVAAEYCR 192
Query: 246 ALPIGS 251
A + S
Sbjct: 193 ACRLKS 198
Score = 162 (62.1 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQ 67
D++G+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q +
Sbjct: 133 DMVGVAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQVAA 188
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
YC A + TC+ GG P + +++G++
Sbjct: 189 EYCRACRLK-STCI-YGGAPKGPQIRDLERGVE 219
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 223 (83.6 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 49/126 (38%), Positives = 72/126 (57%)
Query: 127 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIG 186
RR+ I V G + P +F P +++ + + +PT IQ QG P ALSG D++G
Sbjct: 77 RRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVG 136
Query: 187 IAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQYYCA 245
+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q + YC
Sbjct: 137 VAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQVAAEYCR 192
Query: 246 ALPIGS 251
A + S
Sbjct: 193 ACRLKS 198
Score = 162 (62.1 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQ 67
D++G+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q +
Sbjct: 133 DMVGVAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQVAA 188
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
YC A + TC+ GG P + +++G++
Sbjct: 189 EYCRACRLK-STCI-YGGAPKGPQIRDLERGVE 219
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 223 (83.6 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 49/126 (38%), Positives = 72/126 (57%)
Query: 127 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIG 186
RR+ I V G + P +F P +++ + + +PT IQ QG P ALSG D++G
Sbjct: 77 RRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVG 136
Query: 187 IAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQYYCA 245
+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q + YC
Sbjct: 137 VAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQVAAEYCR 192
Query: 246 ALPIGS 251
A + S
Sbjct: 193 ACRLKS 198
Score = 162 (62.1 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQ 67
D++G+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q +
Sbjct: 133 DMVGVAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQVAA 188
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
YC A + TC+ GG P + +++G++
Sbjct: 189 EYCRACRLK-STCI-YGGAPKGPQIRDLERGVE 219
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 223 (83.6 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 49/126 (38%), Positives = 72/126 (57%)
Query: 127 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIG 186
RR+ I V G + P +F P +++ + + +PT IQ QG P ALSG D++G
Sbjct: 77 RRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVG 136
Query: 187 IAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQYYCA 245
+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q + YC
Sbjct: 137 VAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQVAAEYCR 192
Query: 246 ALPIGS 251
A + S
Sbjct: 193 ACRLKS 198
Score = 162 (62.1 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQ 67
D++G+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q +
Sbjct: 133 DMVGVAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQVAA 188
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
YC A + TC+ GG P + +++G++
Sbjct: 189 EYCRACRLK-STCI-YGGAPKGPQIRDLERGVE 219
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 223 (83.6 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 49/126 (38%), Positives = 72/126 (57%)
Query: 127 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIG 186
RR+ I V G + P +F P +++ + + +PT IQ QG P ALSG D++G
Sbjct: 77 RRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVG 136
Query: 187 IAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQYYCA 245
+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q + YC
Sbjct: 137 VAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQVAAEYCR 192
Query: 246 ALPIGS 251
A + S
Sbjct: 193 ACRLKS 198
Score = 162 (62.1 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQ 67
D++G+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q +
Sbjct: 133 DMVGVAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQVAA 188
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
YC A + TC+ GG P + +++G++
Sbjct: 189 EYCRACRLK-STCI-YGGAPKGPQIRDLERGVE 219
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 223 (83.6 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 49/126 (38%), Positives = 72/126 (57%)
Query: 127 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIG 186
RR+ I V G + P +F P +++ + + +PT IQ QG P ALSG D++G
Sbjct: 77 RRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVG 136
Query: 187 IAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQYYCA 245
+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q + YC
Sbjct: 137 VAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQVAAEYCR 192
Query: 246 ALPIGS 251
A + S
Sbjct: 193 ACRLKS 198
Score = 162 (62.1 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQ 67
D++G+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q +
Sbjct: 133 DMVGVAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQVAA 188
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
YC A + TC+ GG P + +++G++
Sbjct: 189 EYCRACRLK-STCI-YGGAPKGPQIRDLERGVE 219
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 223 (83.6 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 52/126 (41%), Positives = 72/126 (57%)
Query: 127 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIG 186
RR+ I V+G D P F P+ ++ + + PTPIQ QG P ALSG+D++G
Sbjct: 79 RRSKEITVKGRDGPKPIVKFHEANFPKYVMDVITKQNWTDPTPIQAQGWPVALSGKDMVG 138
Query: 187 IAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQYYCA 245
IA TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q + Y
Sbjct: 139 IAQTGSGKTLSYLLPAIVHINHQ----PFLEHGDGPICLVLAPTRELAQQVQQVAAEYGK 194
Query: 246 ALPIGS 251
A I S
Sbjct: 195 ASRIKS 200
Score = 155 (59.6 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 36/96 (37%), Positives = 57/96 (59%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHD 64
+ +D++GIA TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q
Sbjct: 132 SGKDMVGIAQTGSGKTLSYLLPAIVHINHQ----PFLEHGDGPICLVLAPTRELAQQVQQ 187
Query: 65 IIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ Y A I TC+ GG P + +++G++
Sbjct: 188 VAAEYGKASRIK-STCI-YGGAPKGPQIRDLERGVE 221
>TAIR|locus:2037416 [details] [associations]
symbol:RCF1 "regulator of CBF gene expression 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
Uniprot:Q8H0U8
Length = 1166
Score = 227 (85.0 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 54/151 (35%), Positives = 80/151 (52%)
Query: 99 IQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRA 158
I+Y K + + I + + + R+ L + V G DVP + L ++
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 159 LEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPG 218
++ +KP PIQ Q +P +SGRD IG+A TGSGKTL FVLP+L +Q P G
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQP---PVEAG 600
Query: 219 EGPYGLIICPSRELARQTHDIIQYYCAALPI 249
+GP GL++ P+REL +Q H I+ + L I
Sbjct: 601 DGPIGLVMAPTRELVQQIHSDIRKFSKPLGI 631
Score = 169 (64.5 bits), Expect = 5.6e-10, P = 5.6e-10
Identities = 38/95 (40%), Positives = 57/95 (60%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD IG+A TGSGKTL FVLP+L +Q P G+GP GL++ P+REL +Q H
Sbjct: 565 SGRDCIGVAKTGSGKTLGFVLPMLRHIKDQP---PVEAGDGPIGLVMAPTRELVQQIHSD 621
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
I+ + + P+ +R GG + Q + +K+G +
Sbjct: 622 IRKF--SKPLGIRCVPVYGGSGVAQQISELKRGTE 654
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 224 (83.9 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 48/114 (42%), Positives = 66/114 (57%)
Query: 125 IIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDI 184
I R + I +G +P S+ KL L++A+E G KKP+PIQ+ IP L RD+
Sbjct: 294 IFREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDV 353
Query: 185 IGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHD 238
IGIA TGSGKT FVLP+L + EGPY +++ P+RELA+Q +
Sbjct: 354 IGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEE 407
Score = 132 (51.5 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 39/131 (29%), Positives = 66/131 (50%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD+IGIA TGSGKT FVLP+L + EGPY +++ P+RELA+Q +
Sbjct: 351 RDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETV 410
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIR 127
+ L R +GG QS++ ++G++ + P ++ ++ + ++
Sbjct: 411 KFAHYLGF--RVTSIVGG----QSIE--EQGLKITQGCEIVIATPGRLIDCLERRYAVLN 462
Query: 128 R-NLRILVEGD 137
+ N +L E D
Sbjct: 463 QCNYVVLDEAD 473
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 223 (83.6 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 49/126 (38%), Positives = 72/126 (57%)
Query: 127 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIG 186
RR+ I V G + P +F P +++ + + +PT IQ QG P ALSG D++G
Sbjct: 134 RRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVG 193
Query: 187 IAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQYYCA 245
+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q + YC
Sbjct: 194 VAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQVAAEYCR 249
Query: 246 ALPIGS 251
A + S
Sbjct: 250 ACRLKS 255
Score = 162 (62.1 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 35/93 (37%), Positives = 56/93 (60%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQ 67
D++G+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q +
Sbjct: 190 DMVGVAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQVAA 245
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
YC A + TC+ GG P + +++G++
Sbjct: 246 EYCRACRLK-STCI-YGGAPKGPQIRDLERGVE 276
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 221 (82.9 bits), Expect = 2.1e-17, P = 2.1e-17
Identities = 52/113 (46%), Positives = 68/113 (60%)
Query: 124 DIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRD 183
D RR + V+G DVP +F P ++ ++A+G PT IQ QG P ALSGRD
Sbjct: 105 DKFRREHSMAVQGSDVPKPVETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRD 164
Query: 184 IIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGLIICPSRELARQ 235
++GIA TGSGKTL + LP ++ Q P L PG+GP LI+ P+RELA Q
Sbjct: 165 VVGIAETGSGKTLTYCLPAIVHINAQ----PLLAPGDGPIVLILAPTRELAVQ 213
Score = 150 (57.9 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 38/96 (39%), Positives = 55/96 (57%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGLIICPSRELARQTHD 64
+ RD++GIA TGSGKTL + LP ++ Q P L PG+GP LI+ P+RELA Q
Sbjct: 161 SGRDVVGIAETGSGKTLTYCLPAIVHINAQ----PLLAPGDGPIVLILAPTRELAVQIQA 216
Query: 65 IIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
I + + I TC+ GGVP + + +G++
Sbjct: 217 EISKFGKSSRIR-NTCV-YGGVPKGPQIRDLSRGVE 250
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 224 (83.9 bits), Expect = 2.8e-17, P = 2.8e-17
Identities = 53/125 (42%), Positives = 77/125 (61%)
Query: 120 DQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAAL 179
+QV +I R+NL I + G D+ SF + L++A+ + I+ PTPIQ Q IP AL
Sbjct: 282 EQVFEI-RKNLDIRMTGTDLINPVTSFGHYGFDDILLQAIAKQSIETPTPIQKQAIPIAL 340
Query: 180 SGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTH- 237
SGRD+I IA TGSGKT F+ P + ++Q P+L G+GP L + P+RELA Q +
Sbjct: 341 SGRDLIAIAKTGSGKTATFIWPSISHIMDQ----PYLEKGDGPIALFLAPTRELAHQIYL 396
Query: 238 DIIQY 242
+ ++Y
Sbjct: 397 ETLKY 401
Score = 141 (54.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 35/97 (36%), Positives = 54/97 (55%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTH- 63
+ RD+I IA TGSGKT F+ P + ++Q P+L G+GP L + P+RELA Q +
Sbjct: 341 SGRDLIAIAKTGSGKTATFIWPSISHIMDQ----PYLEKGDGPIALFLAPTRELAHQIYL 396
Query: 64 DIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ ++Y + L+T + GGV Q +K G +
Sbjct: 397 ETLKY---SKYFKLKTTVLYGGVSKQQQCKELKAGCE 430
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 220 (82.5 bits), Expect = 2.8e-17, P = 2.8e-17
Identities = 47/109 (43%), Positives = 71/109 (65%)
Query: 127 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIG 186
R+ + V+G D+P +F P+ +++ ++ +G KPTPIQ QG P ALSGRD+IG
Sbjct: 110 RKENEMTVKGHDIPHPITTFDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMALSGRDMIG 169
Query: 187 IAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQ 235
IA TGSGKTL + LP ++ + + +L + G+GP L++ P+RELA Q
Sbjct: 170 IAATGSGKTLSYCLPSIVH-INAQPQLQY--GDGPIVLVLAPTRELAVQ 215
Score = 134 (52.2 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 36/98 (36%), Positives = 56/98 (57%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKTL + LP ++ + + +L + G+GP L++ P+RELA Q
Sbjct: 163 SGRDMIGIAATGSGKTLSYCLPSIVH-INAQPQLQY--GDGPIVLVLAPTRELAVQ---- 215
Query: 66 IQYYCAALPIPLR---TCLAIGGVPMNQSLDVIKKGIQ 100
IQ C+ R TC+ GG P + + +G++
Sbjct: 216 IQTECSKFGKSSRIRNTCV-YGGAPKGPQIRDLARGVE 252
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 220 (82.5 bits), Expect = 3.1e-17, P = 3.1e-17
Identities = 53/125 (42%), Positives = 73/125 (58%)
Query: 115 ILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQG 174
+ ++ +Q + R I VEG DVP F+ P++++ A+ G +PTPIQ QG
Sbjct: 136 VQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQG 195
Query: 175 IPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGLIICPSRELA 233
P AL GRD+IGIA TGSGKTL ++LP L+ Q P L +GP LI+ P+RELA
Sbjct: 196 WPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQ----PRLGQDDGPIVLILAPTRELA 251
Query: 234 RQTHD 238
Q +
Sbjct: 252 VQIQE 256
Score = 132 (51.5 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 35/94 (37%), Positives = 53/94 (56%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGLIICPSRELARQTHDII 66
RD+IGIA TGSGKTL ++LP L+ Q P L +GP LI+ P+RELA Q +
Sbjct: 203 RDLIGIAETGSGKTLAYLLPALVHVSAQ----PRLGQDDGPIVLILAPTRELAVQIQEES 258
Query: 67 QYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + L +R+ GG P + +++G++
Sbjct: 259 RKF--GLRSGVRSTCIYGGAPKGPQIRDLRRGVE 290
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 222 (83.2 bits), Expect = 3.4e-17, P = 3.4e-17
Identities = 44/108 (40%), Positives = 67/108 (62%)
Query: 132 ILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTG 191
I ++GD VP F P+ ++ + +G KPT IQ QG P A+SGRD++G+A TG
Sbjct: 145 ITIKGDQVPTPSIEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTG 204
Query: 192 SGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 239
SGKTL +VLP ++ + + +L G+GP L++ P+RELA+Q +
Sbjct: 205 SGKTLAYVLPAVVH-INNQPRLE--RGDGPIALVLAPTRELAQQIQQV 249
Score = 151 (58.2 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 32/95 (33%), Positives = 57/95 (60%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD++G+A TGSGKTL +VLP ++ + + +L G+GP L++ P+RELA+Q +
Sbjct: 193 SGRDLVGVAQTGSGKTLAYVLPAVVH-INNQPRLE--RGDGPIALVLAPTRELAQQIQQV 249
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + + TC+ GG P Q +++G++
Sbjct: 250 AIEFGSNTHVR-NTCI-FGGAPKGQQARDLERGVE 282
>TAIR|locus:2828586 [details] [associations]
symbol:AT3G02065 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003723 EMBL:AC011664 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000006599 OMA:VTRPIID EMBL:AY065172
EMBL:BT001184 IPI:IPI00516794 IPI:IPI00525607 RefSeq:NP_001030621.1
RefSeq:NP_850499.1 RefSeq:NP_974208.1 UniGene:At.41185
UniGene:At.47211 ProteinModelPortal:Q3EBD3 SMR:Q3EBD3 IntAct:Q3EBD3
PaxDb:Q3EBD3 PRIDE:Q3EBD3 EnsemblPlants:AT3G02065.2
EnsemblPlants:AT3G02065.3 GeneID:821155 KEGG:ath:AT3G02065
GeneFarm:1017 TAIR:At3g02065 InParanoid:Q3EBD3 PhylomeDB:Q3EBD3
ProtClustDB:PLN00206 Genevestigator:Q3EBD3 Uniprot:Q3EBD3
Length = 505
Score = 218 (81.8 bits), Expect = 3.7e-17, P = 3.7e-17
Identities = 51/130 (39%), Positives = 71/130 (54%)
Query: 123 HD--IIRRNLRILVEGDD--VPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAA 178
HD ++RR L I V+G VPP +F LP L+ LE G PTPIQ+Q IPAA
Sbjct: 85 HDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAA 144
Query: 179 LSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHD 238
L+G+ ++ A TGSGKT F++PI+ C ++ P P +++ P+REL Q D
Sbjct: 145 LTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVED 204
Query: 239 IIQYYCAALP 248
+ LP
Sbjct: 205 QAKMLGKGLP 214
Score = 138 (53.6 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 30/93 (32%), Positives = 50/93 (53%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
+ ++ A TGSGKT F++PI+ C ++ P P +++ P+REL Q D Q
Sbjct: 148 KSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVED--Q 205
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+P +T L +GG PM+ L I++G++
Sbjct: 206 AKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVE 238
>ZFIN|ZDB-GENE-050208-665 [details] [associations]
symbol:ddx59 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 59" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-050208-665 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:BX649292
IPI:IPI00786758 Ensembl:ENSDART00000105600 Bgee:F1R8P9
Uniprot:F1R8P9
Length = 584
Score = 219 (82.2 bits), Expect = 3.9e-17, P = 3.9e-17
Identities = 64/204 (31%), Positives = 99/204 (48%)
Query: 46 GPYGLIICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPI 105
G YG IC + +DI C A + C G N K + ++
Sbjct: 82 GRYGEYICDKTD-----NDICSLECKAAHLAA-VCADFGDKLFNN-----KNTPESSENT 130
Query: 106 KT-SWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGI 164
K+ S++ I L ++ + ++ L I+ G +V F+ + P L R L+A G
Sbjct: 131 KSYSYKQDAFISELTEEQIERVKAELGIVSVGTEVCRPVIEFQHCRFPTVLERNLKAAGY 190
Query: 165 KKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGL 224
+ PTP+Q+Q +P L+GRD+I A TGSGKT+ F+LP++M L+ E+ P P L
Sbjct: 191 EAPTPVQMQMVPVGLTGRDVIATADTGSGKTVAFLLPVVMRALQSESASPSCPA----CL 246
Query: 225 IICPSRELARQTHDIIQYYCAALP 248
I+ P+RELA Q + + LP
Sbjct: 247 ILTPTRELAIQIEEQAKELMRGLP 270
Score = 154 (59.3 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 37/93 (39%), Positives = 54/93 (58%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD+I A TGSGKT+ F+LP++M L+ E+ P P LI+ P+RELA Q + +
Sbjct: 208 RDVIATADTGSGKTVAFLLPVVMRALQSESASPSCPA----CLILTPTRELAIQIEEQAK 263
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
LP +RT L +GG+P+ L +K I+
Sbjct: 264 ELMRGLP-NMRTALLVGGMPLPPQLHRLKHNIK 295
>UNIPROTKB|G3X7G8 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:DAAA02043967 EMBL:DAAA02043968
RefSeq:NP_001179318.1 UniGene:Bt.41740 Ensembl:ENSBTAT00000027398
GeneID:514901 KEGG:bta:514901 NextBio:20871562 Uniprot:G3X7G8
Length = 620
Score = 219 (82.2 bits), Expect = 4.4e-17, P = 4.4e-17
Identities = 53/129 (41%), Positives = 72/129 (55%)
Query: 120 DQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAAL 179
DQ+ ++ RR L I V G VP F PE+L R L+A G + PTPIQ+Q IP L
Sbjct: 181 DQIENL-RRQLGITVRGRGVPRPIVDFEHCGFPEALNRNLKASGYEVPTPIQMQMIPVGL 239
Query: 180 SGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 239
GRD++ A TGSGKT F+LP+++ L Q + P GL++ P+RELA Q
Sbjct: 240 LGRDVLASADTGSGKTAAFLLPVILRALSQS--------KSPSGLVLTPTRELAIQIERQ 291
Query: 240 IQYYCAALP 248
+ + LP
Sbjct: 292 AKELMSGLP 300
Score = 135 (52.6 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 34/93 (36%), Positives = 51/93 (54%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD++ A TGSGKT F+LP+++ L Q + P GL++ P+RELA Q +
Sbjct: 242 RDVLASADTGSGKTAAFLLPVILRALSQS--------KSPSGLVLTPTRELAIQIERQAK 293
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ LP LRT L +GG+P +++ IQ
Sbjct: 294 ELMSGLPC-LRTALLVGGLPAPPQRHRLRQRIQ 325
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 222 (83.2 bits), Expect = 4.7e-17, P = 4.7e-17
Identities = 56/139 (40%), Positives = 77/139 (55%)
Query: 99 IQYNDPIKTSWRAPRCILSL-PDQVHDIIRRNLR-ILVEGDDVPPACCSFRLMKLPESLV 156
I Y D K + P + +L P +V D +R +L I + G D P S+ L +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEV-DELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTI 430
Query: 157 RALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL 216
+ + G +KPT IQ Q IPA SGRD+IG+A TGSGKT+ F+LP+ +Q P
Sbjct: 431 SVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQR---PLK 487
Query: 217 PGEGPYGLIICPSRELARQ 235
GEGP +I+ P+RELA Q
Sbjct: 488 TGEGPIAIIMTPTRELAVQ 506
Score = 165 (63.1 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 37/95 (38%), Positives = 54/95 (56%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IG+A TGSGKT+ F+LP+ +Q P GEGP +I+ P+RELA Q
Sbjct: 454 SGRDVIGVAKTGSGKTIAFLLPMFRHIKDQR---PLKTGEGPIAIIMTPTRELAVQIFRE 510
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + L I R C A GG P+ + +K+G +
Sbjct: 511 CKPFLKLLNI--RACCAYGGAPIKDQIADLKRGAE 543
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 217 (81.4 bits), Expect = 5.6e-17, P = 5.6e-17
Identities = 48/110 (43%), Positives = 68/110 (61%)
Query: 127 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIG 186
R+ + + G D+P +F P+ ++ ++A+G KPT IQ QG P ALSGRD++G
Sbjct: 96 RKENEMTISGHDIPKPITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVG 155
Query: 187 IAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGLIICPSRELARQ 235
IA TGSGKTL + LP ++ Q P L PG+GP L++ P+RELA Q
Sbjct: 156 IAATGSGKTLSYCLPGIVHINAQ----PLLAPGDGPIVLVLAPTRELAVQ 201
Score = 143 (55.4 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 40/97 (41%), Positives = 56/97 (57%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGLIICPSRELARQTHD 64
+ RD++GIA TGSGKTL + LP ++ Q P L PG+GP L++ P+RELA Q
Sbjct: 149 SGRDMVGIAATGSGKTLSYCLPGIVHINAQ----PLLAPGDGPIVLVLAPTRELAVQ--- 201
Query: 65 IIQYYCAALPIPLR---TCLAIGGVPMNQSLDVIKKG 98
IQ C+ R TC+ GGVP +Q + + +G
Sbjct: 202 -IQTECSKFGHSSRIRNTCV-YGGVPKSQQIRDLSRG 236
>FB|FBgn0032690 [details] [associations]
symbol:CG10333 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5
snRNP" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0022008 GO:GO:0005682 GO:GO:0003676 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
OMA:PIRNWKE FlyBase:FBgn0032690 EMBL:BT021222 RefSeq:NP_609888.2
UniGene:Dm.456 SMR:Q9VJ74 STRING:Q9VJ74 EnsemblMetazoa:FBtr0081072
GeneID:35112 KEGG:dme:Dmel_CG10333 UCSC:CG10333-RA
InParanoid:Q9VJ74 GenomeRNAi:35112 NextBio:791924 Uniprot:Q9VJ74
Length = 822
Score = 219 (82.2 bits), Expect = 7.2e-17, P = 7.2e-17
Identities = 45/116 (38%), Positives = 71/116 (61%)
Query: 125 IIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDI 184
I R + + ++G +P S+ P+ ++ ++ G K+PTPIQ Q IP L RDI
Sbjct: 375 IFREDYNVTIKGGRIPNPIRSWNESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDI 434
Query: 185 IGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPG--EGPYGLIICPSRELARQTHD 238
IG+A TGSGKTL F++P+L + ++ K+ L +GPY +I+ P+RELA+Q +
Sbjct: 435 IGVAETGSGKTLAFLIPLLSW-IQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEE 489
Score = 152 (58.6 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 33/82 (40%), Positives = 54/82 (65%)
Query: 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPG--EGPYGLIICPSRELARQTHD 64
+RDIIG+A TGSGKTL F++P+L + ++ K+ L +GPY +I+ P+RELA+Q +
Sbjct: 431 NRDIIGVAETGSGKTLAFLIPLLSW-IQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEE 489
Query: 65 IIQYYCAALPIPLRTCLAIGGV 86
+ P+ +RT + +GG+
Sbjct: 490 ETTKF--GQPLGIRTVVVVGGL 509
>UNIPROTKB|E1BXX5 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:AADN02033796 IPI:IPI00587299
RefSeq:XP_422189.2 ProteinModelPortal:E1BXX5
Ensembl:ENSGALT00000003389 GeneID:424346 KEGG:gga:424346
NextBio:20826688 Uniprot:E1BXX5
Length = 625
Score = 215 (80.7 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 56/134 (41%), Positives = 73/134 (54%)
Query: 115 ILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQG 174
ILSL D+ + ++ L I ++G VP F PE+L L+ G + PTPIQ+Q
Sbjct: 180 ILSLQDEQVENLKLQLGIAIQGQQVPRPIIEFEHCGFPETLNSNLKNSGYEVPTPIQMQM 239
Query: 175 IPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELAR 234
IP L GRDI+ A TGSGKT F+LP++M L ET E P LI+ P+RELA
Sbjct: 240 IPVGLLGRDIVASADTGSGKTAAFLLPVIMKVLN-ET-------ETPSALILAPTRELAI 291
Query: 235 QTHDIIQYYCAALP 248
Q + A LP
Sbjct: 292 QIERQAKELMAGLP 305
Score = 144 (55.7 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 44/118 (37%), Positives = 61/118 (51%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RDI+ A TGSGKT F+LP++M L ET E P LI+ P+RELA Q +
Sbjct: 247 RDIVASADTGSGKTAAFLLPVIMKVLN-ET-------ETPSALILAPTRELAIQIERQAK 298
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDI 125
A LP +RT L +GG+P+ L +K+ ++ I T R + Q+H I
Sbjct: 299 ELMAGLP-NMRTVLLVGGLPLPPQLHRLKQSVKVI--IATPGRLLEILRQSSVQLHGI 353
>ASPGD|ASPL0000051195 [details] [associations]
symbol:AN1634 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 EMBL:BN001307
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000026 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:P09052
HOGENOM:HOG000268796 OMA:PIRNWKE RefSeq:XP_659238.1
ProteinModelPortal:Q5BCU6 EnsemblFungi:CADANIAT00008272
GeneID:2874876 KEGG:ani:AN1634.2 OrthoDB:EOG4KPXK0 Uniprot:Q5BCU6
Length = 782
Score = 216 (81.1 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 44/113 (38%), Positives = 68/113 (60%)
Query: 125 IIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDI 184
I + + I +G VP S+ LP+ L+ ++ G K+PTPIQ IP A+ RD+
Sbjct: 327 IFKEDFNIATKGGSVPNPMRSWDESGLPKRLLELVDRVGYKEPTPIQRAAIPIAMQSRDL 386
Query: 185 IGIAFTGSGKTLVFVLPILMFCLE--QETKLPFLPGEGPYGLIICPSRELARQ 235
IG+A TGSGKT F+LP+L + E + + + +GPY +++ P+RELA+Q
Sbjct: 387 IGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQ 439
Score = 143 (55.4 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 36/111 (32%), Positives = 57/111 (51%)
Query: 7 SRDIIGIAFTGSGKTLVFVLPILMFCLE--QETKLPFLPGEGPYGLIICPSRELARQTHD 64
SRD+IG+A TGSGKT F+LP+L + E + + + +GPY +++ P+RELA+Q
Sbjct: 383 SRDLIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIE- 441
Query: 65 IIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCI 115
I+ P+ +GG + ++ G + I T R CI
Sbjct: 442 -IEAKKFTEPLGFNVVSIVGGHSFEEQAYSLRNGAEII--IATPGRLVDCI 489
>WB|WBGene00008119 [details] [associations]
symbol:C46F11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0000003 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268793 KO:K12835 GeneTree:ENSGT00610000086076
OMA:QEYANLM EMBL:Z81449 PIR:T19974 RefSeq:NP_497743.1
ProteinModelPortal:Q93382 SMR:Q93382 STRING:Q93382 PaxDb:Q93382
EnsemblMetazoa:C46F11.4 GeneID:175469 KEGG:cel:CELE_C46F11.4
UCSC:C46F11.4 CTD:175469 WormBase:C46F11.4 InParanoid:Q93382
NextBio:888300 Uniprot:Q93382
Length = 811
Score = 216 (81.1 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 57/155 (36%), Positives = 82/155 (52%)
Query: 93 DVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIR-RN-LRILVEGDDVPPACCSFRLMK 150
D+ IQY K + I L D+IR +N + + V G P CSF
Sbjct: 214 DIDHSQIQYQKFNKNFYEEHEDIKRL--HYMDVIRLQNTMNLRVGGLKPPRPVCSFAHFS 271
Query: 151 LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQE 210
+ L+ A+ ++PTPIQ IP+ALSGRD++GIA TGSGKT ++ P ++ ++Q
Sbjct: 272 FDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVHIMDQ- 330
Query: 211 TKLPFLP-GEGPYGLIICPSRELARQTHDIIQYYC 244
P L GEGP +I+ P+RELA Q + +C
Sbjct: 331 ---PDLKAGEGPVAVIVVPTRELAIQVFQEAKKFC 362
Score = 136 (52.9 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 35/97 (36%), Positives = 54/97 (55%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHD 64
+ RD++GIA TGSGKT ++ P ++ ++Q P L GEGP +I+ P+RELA Q
Sbjct: 301 SGRDVLGIAKTGSGKTAAYLWPAIVHIMDQ----PDLKAGEGPVAVIVVPTRELAIQVFQ 356
Query: 65 IIQYYCAALPI-PLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ +C I P+ C GG QS ++ +G +
Sbjct: 357 EAKKFCKVYNINPI--CAYGGGSKWEQSNELQNEGAE 391
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 214 (80.4 bits), Expect = 2.2e-16, P = 2.2e-16
Identities = 56/139 (40%), Positives = 77/139 (55%)
Query: 99 IQYNDPI-KTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVR 157
I Y +PI K + I + +Q R+ L I V G DV +F ++
Sbjct: 183 IDY-EPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMS 241
Query: 158 ALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP 217
A++ + +KPT IQ Q +P LSGRD+IGIA TGSGKT FVLP+++ ++Q P L
Sbjct: 242 AIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQ----PELQ 297
Query: 218 -GEGPYGLIICPSRELARQ 235
EGP G+I P+RELA Q
Sbjct: 298 RDEGPIGVICAPTRELAHQ 316
Score = 142 (55.0 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 37/96 (38%), Positives = 53/96 (55%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHD 64
+ RD+IGIA TGSGKT FVLP+++ ++Q P L EGP G+I P+RELA Q
Sbjct: 264 SGRDVIGIAKTGSGKTAAFVLPMIVHIMDQ----PELQRDEGPIGVICAPTRELAHQIFL 319
Query: 65 IIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + A LR GG+ ++ +K G +
Sbjct: 320 EAKKFSKAYG--LRVSAVYGGMSKHEQFKELKAGCE 353
>UNIPROTKB|I3LNN1 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:PIRNWKE Ensembl:ENSSSCT00000027880 Uniprot:I3LNN1
Length = 801
Score = 214 (80.4 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 48/126 (38%), Positives = 73/126 (57%)
Query: 118 LPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA 177
+ D+ I R + I +G +P S++ LP ++ ++ G K+PTPIQ Q IP
Sbjct: 365 MTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPI 424
Query: 178 ALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-----GEGPYGLIICPSREL 232
L RDIIG+A TGSGKT F++P+L++ T LP + +GPY +I+ P+REL
Sbjct: 425 GLQNRDIIGVAETGSGKTAAFLIPLLVWI----TTLPKIDRIEESDQGPYAIILAPTREL 480
Query: 233 ARQTHD 238
A+Q +
Sbjct: 481 AQQIEE 486
Score = 139 (54.0 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 34/86 (39%), Positives = 53/86 (61%)
Query: 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-----GEGPYGLIICPSRELARQ 61
+RDIIG+A TGSGKT F++P+L++ T LP + +GPY +I+ P+RELA+Q
Sbjct: 428 NRDIIGVAETGSGKTAAFLIPLLVWI----TTLPKIDRIEESDQGPYAIILAPTRELAQQ 483
Query: 62 THD-IIQYYCAALPIPLRTCLAIGGV 86
+ I++ P+ +R IGG+
Sbjct: 484 IEEETIKF---GKPLGIRPVAVIGGI 506
>RGD|1308685 [details] [associations]
symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005682 "U5 snRNP"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005886 "plasma membrane" evidence=IEA;ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1308685 GO:GO:0005524
GO:GO:0003676 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH474035 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE
RefSeq:NP_001100263.2 UniGene:Rn.2319 Ensembl:ENSRNOT00000055529
GeneID:300208 KEGG:rno:300208 NextBio:646540 Uniprot:G3V9M1
Length = 819
Score = 214 (80.4 bits), Expect = 2.5e-16, P = 2.5e-16
Identities = 48/126 (38%), Positives = 73/126 (57%)
Query: 118 LPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA 177
+ D+ I R + I +G +P S++ LP ++ ++ G K+PTPIQ Q IP
Sbjct: 364 MTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPI 423
Query: 178 ALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-----GEGPYGLIICPSREL 232
L RDIIG+A TGSGKT F++P+L++ T LP + +GPY +I+ P+REL
Sbjct: 424 GLQNRDIIGVAETGSGKTAAFLIPLLVWI----TTLPKIDRIEESDQGPYAIILAPTREL 479
Query: 233 ARQTHD 238
A+Q +
Sbjct: 480 AQQIEE 485
Score = 145 (56.1 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 35/86 (40%), Positives = 54/86 (62%)
Query: 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-----GEGPYGLIICPSRELARQ 61
+RDIIG+A TGSGKT F++P+L++ T LP + +GPY +I+ P+RELA+Q
Sbjct: 427 NRDIIGVAETGSGKTAAFLIPLLVWI----TTLPKIDRIEESDQGPYAIILAPTRELAQQ 482
Query: 62 THD-IIQYYCAALPIPLRTCLAIGGV 86
+ I++ P+ +RT IGG+
Sbjct: 483 IEEETIKF---GKPLGIRTVAVIGGI 505
>UNIPROTKB|A6QLB2 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 HOGENOM:HOG000268796
HOVERGEN:HBG102054 OMA:PIRNWKE OrthoDB:EOG46T312 EMBL:DAAA02012954
EMBL:BC147902 IPI:IPI00866828 RefSeq:NP_001095672.1
UniGene:Bt.14027 STRING:A6QLB2 Ensembl:ENSBTAT00000029071
GeneID:537395 KEGG:bta:537395 InParanoid:A6QLB2 NextBio:20877127
Uniprot:A6QLB2
Length = 820
Score = 214 (80.4 bits), Expect = 2.5e-16, P = 2.5e-16
Identities = 48/126 (38%), Positives = 73/126 (57%)
Query: 118 LPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA 177
+ D+ I R + I +G +P S++ LP ++ ++ G K+PTPIQ Q IP
Sbjct: 365 MTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPI 424
Query: 178 ALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-----GEGPYGLIICPSREL 232
L RDIIG+A TGSGKT F++P+L++ T LP + +GPY +I+ P+REL
Sbjct: 425 GLQNRDIIGVAETGSGKTAAFLIPLLVWI----TTLPKIDRIEESDQGPYAIILAPTREL 480
Query: 233 ARQTHD 238
A+Q +
Sbjct: 481 AQQIEE 486
Score = 145 (56.1 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 35/86 (40%), Positives = 54/86 (62%)
Query: 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-----GEGPYGLIICPSRELARQ 61
+RDIIG+A TGSGKT F++P+L++ T LP + +GPY +I+ P+RELA+Q
Sbjct: 428 NRDIIGVAETGSGKTAAFLIPLLVWI----TTLPKIDRIEESDQGPYAIILAPTRELAQQ 483
Query: 62 THD-IIQYYCAALPIPLRTCLAIGGV 86
+ I++ P+ +RT IGG+
Sbjct: 484 IEEETIKF---GKPLGIRTVAVIGGI 506
>UNIPROTKB|E2RTL6 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005682 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE EMBL:AAEX03015077
RefSeq:XP_851051.1 ProteinModelPortal:E2RTL6
Ensembl:ENSCAFT00000013894 GeneID:477624 KEGG:cfa:477624
NextBio:20853071 Uniprot:E2RTL6
Length = 820
Score = 214 (80.4 bits), Expect = 2.5e-16, P = 2.5e-16
Identities = 48/126 (38%), Positives = 73/126 (57%)
Query: 118 LPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA 177
+ D+ I R + I +G +P S++ LP ++ ++ G K+PTPIQ Q IP
Sbjct: 365 MTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPI 424
Query: 178 ALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-----GEGPYGLIICPSREL 232
L RDIIG+A TGSGKT F++P+L++ T LP + +GPY +I+ P+REL
Sbjct: 425 GLQNRDIIGVAETGSGKTAAFLIPLLVWI----TTLPKIDRIEESDQGPYAIILAPTREL 480
Query: 233 ARQTHD 238
A+Q +
Sbjct: 481 AQQIEE 486
Score = 145 (56.1 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 35/86 (40%), Positives = 54/86 (62%)
Query: 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-----GEGPYGLIICPSRELARQ 61
+RDIIG+A TGSGKT F++P+L++ T LP + +GPY +I+ P+RELA+Q
Sbjct: 428 NRDIIGVAETGSGKTAAFLIPLLVWI----TTLPKIDRIEESDQGPYAIILAPTRELAQQ 483
Query: 62 THD-IIQYYCAALPIPLRTCLAIGGV 86
+ I++ P+ +RT IGG+
Sbjct: 484 IEEETIKF---GKPLGIRTVAVIGGI 506
>UNIPROTKB|Q9BUQ8 [details] [associations]
symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=IC]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:AF026402 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0005682 GO:GO:0003676 EMBL:CH471111 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
KO:K12858 EMBL:AK312379 EMBL:BC002366 IPI:IPI00006725
RefSeq:NP_004809.2 UniGene:Hs.130098 ProteinModelPortal:Q9BUQ8
SMR:Q9BUQ8 DIP:DIP-34974N IntAct:Q9BUQ8 MINT:MINT-1572793
STRING:Q9BUQ8 PhosphoSite:Q9BUQ8 DMDM:160385708 PaxDb:Q9BUQ8
PRIDE:Q9BUQ8 DNASU:9416 Ensembl:ENST00000308025 GeneID:9416
KEGG:hsa:9416 UCSC:uc001rsm.3 CTD:9416 GeneCards:GC12M049223
HGNC:HGNC:17347 HPA:HPA038680 MIM:612172 neXtProt:NX_Q9BUQ8
PharmGKB:PA134934941 HOGENOM:HOG000268796 HOVERGEN:HBG102054
InParanoid:Q9BUQ8 OMA:PIRNWKE OrthoDB:EOG46T312 PhylomeDB:Q9BUQ8
GenomeRNAi:9416 NextBio:35278 ArrayExpress:Q9BUQ8 Bgee:Q9BUQ8
CleanEx:HS_DDX23 Genevestigator:Q9BUQ8 GermOnline:ENSG00000174243
Uniprot:Q9BUQ8
Length = 820
Score = 214 (80.4 bits), Expect = 2.5e-16, P = 2.5e-16
Identities = 48/126 (38%), Positives = 73/126 (57%)
Query: 118 LPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA 177
+ D+ I R + I +G +P S++ LP ++ ++ G K+PTPIQ Q IP
Sbjct: 365 MTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPI 424
Query: 178 ALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-----GEGPYGLIICPSREL 232
L RDIIG+A TGSGKT F++P+L++ T LP + +GPY +I+ P+REL
Sbjct: 425 GLQNRDIIGVAETGSGKTAAFLIPLLVWI----TTLPKIDRIEESDQGPYAIILAPTREL 480
Query: 233 ARQTHD 238
A+Q +
Sbjct: 481 AQQIEE 486
Score = 145 (56.1 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 35/86 (40%), Positives = 54/86 (62%)
Query: 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-----GEGPYGLIICPSRELARQ 61
+RDIIG+A TGSGKT F++P+L++ T LP + +GPY +I+ P+RELA+Q
Sbjct: 428 NRDIIGVAETGSGKTAAFLIPLLVWI----TTLPKIDRIEESDQGPYAIILAPTRELAQQ 483
Query: 62 THD-IIQYYCAALPIPLRTCLAIGGV 86
+ I++ P+ +RT IGG+
Sbjct: 484 IEEETIKF---GKPLGIRTVAVIGGI 506
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 211 (79.3 bits), Expect = 3.0e-16, P = 3.0e-16
Identities = 46/126 (36%), Positives = 71/126 (56%)
Query: 127 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIG 186
R + + V G + P +F P +++ ++ + +PT IQ QG P ALSG D++G
Sbjct: 65 RSSKEVTVRGHNCPKPIINFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVG 124
Query: 187 IAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQYYCA 245
+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q + Y
Sbjct: 125 VAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQVAAEYSR 180
Query: 246 ALPIGS 251
A + S
Sbjct: 181 ACRLKS 186
Score = 152 (58.6 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 34/93 (36%), Positives = 55/93 (59%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQ 67
D++G+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q +
Sbjct: 121 DMVGVAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQVAA 176
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
Y A + TC+ GG P + +++G++
Sbjct: 177 EYSRACRLK-STCI-YGGAPKGPQIRDLERGVE 207
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 211 (79.3 bits), Expect = 3.1e-16, P = 3.1e-16
Identities = 46/126 (36%), Positives = 71/126 (56%)
Query: 127 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIG 186
R + + V G + P +F P +++ ++ + +PT IQ QG P ALSG D++G
Sbjct: 73 RSSKEVTVRGHNCPKPIINFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLDMVG 132
Query: 187 IAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQYYCA 245
+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q + Y
Sbjct: 133 VAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQVAAEYSR 188
Query: 246 ALPIGS 251
A + S
Sbjct: 189 ACRLKS 194
Score = 152 (58.6 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 34/93 (36%), Positives = 55/93 (59%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQ 67
D++G+A TGSGKTL ++LP ++ Q PFL G+GP L++ P+RELA+Q +
Sbjct: 129 DMVGVAQTGSGKTLSYLLPAIVHINHQ----PFLERGDGPICLVLAPTRELAQQVQQVAA 184
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
Y A + TC+ GG P + +++G++
Sbjct: 185 EYSRACRLK-STCI-YGGAPKGPQIRDLERGVE 215
>ZFIN|ZDB-GENE-030131-6215 [details] [associations]
symbol:ddx23 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 23" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-6215
GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
CTD:9416 HOGENOM:HOG000268796 HOVERGEN:HBG102054 OrthoDB:EOG46T312
EMBL:CR936486 EMBL:CR354537 EMBL:BC060524 IPI:IPI00509665
RefSeq:NP_956176.1 UniGene:Dr.78688 STRING:Q6P9Z2
Ensembl:ENSDART00000019620 GeneID:334283 KEGG:dre:334283
InParanoid:Q6P9Z2 NextBio:20810336 Uniprot:Q6P9Z2
Length = 807
Score = 213 (80.0 bits), Expect = 3.1e-16, P = 3.1e-16
Identities = 48/126 (38%), Positives = 72/126 (57%)
Query: 118 LPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA 177
+ D+ I R + I +G +P +++ LP ++ +E G K PTPIQ Q IP
Sbjct: 352 MTDRDWRIFREDYSITTKGGKIPNPIRNWKEYSLPPHILEVIEKCGYKDPTPIQRQAIPI 411
Query: 178 ALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-----GEGPYGLIICPSREL 232
L RDIIG+A TGSGKT F++P+L++ T LP + +GPY +I+ P+REL
Sbjct: 412 GLQNRDIIGVAETGSGKTAAFLIPLLVWI----TTLPKIDRIEDSDQGPYAIILAPTREL 467
Query: 233 ARQTHD 238
A+Q +
Sbjct: 468 AQQIEE 473
Score = 145 (56.1 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 35/86 (40%), Positives = 54/86 (62%)
Query: 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-----GEGPYGLIICPSRELARQ 61
+RDIIG+A TGSGKT F++P+L++ T LP + +GPY +I+ P+RELA+Q
Sbjct: 415 NRDIIGVAETGSGKTAAFLIPLLVWI----TTLPKIDRIEDSDQGPYAIILAPTRELAQQ 470
Query: 62 THD-IIQYYCAALPIPLRTCLAIGGV 86
+ I++ P+ +RT IGG+
Sbjct: 471 IEEETIKF---GKPLGIRTVAVIGGI 493
>WB|WBGene00017162 [details] [associations]
symbol:ddx-23 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0040021 "hermaphrodite germ-line sex determination"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
Uniprot:Q95QN2
Length = 730
Score = 210 (79.0 bits), Expect = 5.5e-16, P = 5.5e-16
Identities = 49/135 (36%), Positives = 76/135 (56%)
Query: 109 WRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPT 168
WR + + D+ I R + I ++G VP ++ P+ + +A++ G +PT
Sbjct: 267 WRMKE-LSEMSDRDWRIFREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPT 325
Query: 169 PIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGE-----GPYG 223
PIQ Q IP L RD+IG+A TGSGKT F+LP+L++ T LP + + GPY
Sbjct: 326 PIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWI----TSLPKMERQEHRDLGPYA 381
Query: 224 LIICPSRELARQTHD 238
+I+ P+RELA+Q +
Sbjct: 382 IIMAPTRELAQQIEE 396
Score = 136 (52.9 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 35/99 (35%), Positives = 55/99 (55%)
Query: 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGE-----GPYGLIICPSRELARQ 61
+RD+IG+A TGSGKT F+LP+L++ T LP + + GPY +I+ P+RELA+Q
Sbjct: 338 NRDVIGVAETGSGKTAAFLLPLLVWI----TSLPKMERQEHRDLGPYAIIMAPTRELAQQ 393
Query: 62 THDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + L I +T IGG ++ G++
Sbjct: 394 IEEETNKFGKLLGI--KTVSVIGGASREDQGMKLRMGVE 430
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 207 (77.9 bits), Expect = 6.9e-16, P = 6.9e-16
Identities = 46/110 (41%), Positives = 67/110 (60%)
Query: 127 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIG 186
R+ I+V G +VP +F P +++ ++ G + PTPIQ Q P A+SGRD++G
Sbjct: 105 RKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVG 164
Query: 187 IAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGLIICPSRELARQ 235
I+ TGSGKTL + LP ++ Q P L PG+GP L++ P+RELA Q
Sbjct: 165 ISATGSGKTLSYCLPAIVHINAQ----PLLSPGDGPIVLVLAPTRELAVQ 210
Score = 138 (53.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 38/99 (38%), Positives = 55/99 (55%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGLIICPSRELARQTHD 64
+ RD++GI+ TGSGKTL + LP ++ Q P L PG+GP L++ P+RELA Q
Sbjct: 158 SGRDMVGISATGSGKTLSYCLPAIVHINAQ----PLLSPGDGPIVLVLAPTRELAVQ--- 210
Query: 65 IIQYYCAALPIPLR---TCLAIGGVPMNQSLDVIKKGIQ 100
IQ C R TC+ GGVP + + +G++
Sbjct: 211 -IQQECTKFGKSSRIRNTCV-YGGVPRGPQIRDLIRGVE 247
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 208 (78.3 bits), Expect = 8.8e-16, P = 8.8e-16
Identities = 45/113 (39%), Positives = 66/113 (58%)
Query: 127 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIG 186
R I V G VP F + LP+ +++ + +G K PT IQ QG P A+SG + +G
Sbjct: 265 REEQEITVRGQ-VPNPIQDFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVG 323
Query: 187 IAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 239
IA TGSGKTL ++LP ++ Q+ P G+GP L++ P+RELA+Q +
Sbjct: 324 IAKTGSGKTLGYILPAIVHINNQQ---PLQRGDGPIALVLAPTRELAQQIQQV 373
Score = 137 (53.3 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 30/92 (32%), Positives = 53/92 (57%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 68
+ +GIA TGSGKTL ++LP ++ Q+ P G+GP L++ P+RELA+Q +
Sbjct: 320 NFVGIAKTGSGKTLGYILPAIVHINNQQ---PLQRGDGPIALVLAPTRELAQQIQQVATE 376
Query: 69 YCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ ++ + TC+ GG P + +++G +
Sbjct: 377 FGSSSYVR-NTCV-FGGAPKGGQMRDLQRGCE 406
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 208 (78.3 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 48/113 (42%), Positives = 65/113 (57%)
Query: 127 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIG 186
R + ++ V+G +VPP F P L++ + G PTPIQ Q P AL GRDIIG
Sbjct: 367 RASFQMTVKGREVPPPIMQFTQAPFPGYLMKEIIGAGFPNPTPIQSQAWPIALKGRDIIG 426
Query: 187 IAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGLIICPSRELARQTHD 238
+A TGSGKTL F+LP ++ Q P L +GP L++ P+RELA Q +
Sbjct: 427 LAKTGSGKTLAFLLPSIVHINAQ----PVLREDDGPIVLVLAPTRELALQIQE 475
Score = 137 (53.3 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 36/94 (38%), Positives = 52/94 (55%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGLIICPSRELARQTHDII 66
RDIIG+A TGSGKTL F+LP ++ Q P L +GP L++ P+RELA Q +
Sbjct: 422 RDIIGLAKTGSGKTLAFLLPSIVHINAQ----PVLREDDGPIVLVLAPTRELALQIQEET 477
Query: 67 QYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ I TC+ GG + + +KKG++
Sbjct: 478 NKFGGTSQIS-NTCV-YGGASKHTQVAALKKGVE 509
>UNIPROTKB|A4RN46 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581
"mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG40CMR1 RefSeq:XP_003713486.1
ProteinModelPortal:A4RN46 EnsemblFungi:MGG_15532T0 GeneID:12987087
KEGG:mgr:MGG_15532 Uniprot:A4RN46
Length = 1012
Score = 209 (78.6 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 51/134 (38%), Positives = 72/134 (53%)
Query: 104 PI-KTSWRAPRCILSLPDQVHDIIRRNLR-ILVEGDDVPPACCSFRLMKLPESLVRALEA 161
P+ K W P + + + +R L I V G DVP + L L ++ +
Sbjct: 336 PVRKNFWVEPYELSEMTEAEVAELRLELDGIKVSGKDVPKPVQKWSLCGLTRPILDVIAK 395
Query: 162 KGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGP 221
KPT IQ+Q +P +SGRD++G+A TGSGKT+ F+LP+ +QE P EGP
Sbjct: 396 LEYDKPTAIQMQALPVIMSGRDVVGVAKTGSGKTMAFLLPMFRHIKDQE---PVKDNEGP 452
Query: 222 YGLIICPSRELARQ 235
GLI+ P+RELA Q
Sbjct: 453 IGLILTPTRELAVQ 466
Score = 163 (62.4 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 44/132 (33%), Positives = 68/132 (51%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD++G+A TGSGKT+ F+LP+ +QE P EGP GLI+ P+RELA Q
Sbjct: 414 SGRDVVGVAKTGSGKTMAFLLPMFRHIKDQE---PVKDNEGPIGLILTPTRELAVQIFRD 470
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDI 125
+ + L LR A GG P+ + +K+G + + T+ R + + +V +
Sbjct: 471 CKPFLKTLG--LRAVCAYGGPPIKDQIADLKRGAEI--VVATTGRMIDLLAANQGRVVSL 526
Query: 126 IRRNLRILVEGD 137
R +L E D
Sbjct: 527 RRTTYIVLDEAD 538
>UNIPROTKB|B7Z5N6 [details] [associations]
symbol:DDX59 "cDNA FLJ56549, highly similar to Homo sapiens
DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 (DDX59), transcript
variant 2, mRNA" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL445483 UniGene:Hs.497332 HGNC:HGNC:25360
HOGENOM:HOG000006599 HOVERGEN:HBG106120 OrthoDB:EOG4K9BBZ
EMBL:AK299219 IPI:IPI00514037 SMR:B7Z5N6 Ensembl:ENST00000367348
UCSC:uc010ppl.1 Uniprot:B7Z5N6
Length = 567
Score = 205 (77.2 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 56/135 (41%), Positives = 76/135 (56%)
Query: 115 ILSLP-DQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQ 173
IL+L DQ+ ++ ++ L ILV+G +V F LPE L L+ G + PTPIQ+Q
Sbjct: 174 ILNLQEDQIENL-KQQLGILVQGQEVTRPIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQ 232
Query: 174 GIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELA 233
IP L GRDI+ A TGSGKT F+LP++M L E+K P LI+ P+RELA
Sbjct: 233 MIPVGLLGRDILASADTGSGKTAAFLLPVIMRALF-ESKTPS-------ALILTPTRELA 284
Query: 234 RQTHDIIQYYCAALP 248
Q + + LP
Sbjct: 285 IQIERQAKELMSGLP 299
Score = 122 (48.0 bits), Expect = 9.0e-05, P = 9.0e-05
Identities = 34/85 (40%), Positives = 48/85 (56%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RDI+ A TGSGKT F+LP++M L E+K P LI+ P+RELA Q +
Sbjct: 241 RDILASADTGSGKTAAFLLPVIMRALF-ESKTPS-------ALILTPTRELAIQIERQAK 292
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSL 92
+ LP ++T L +GG+P+ L
Sbjct: 293 ELMSGLP-RMKTVLLVGGLPLPPQL 316
>UNIPROTKB|Q5T1V6 [details] [associations]
symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
Genevestigator:Q5T1V6 Uniprot:Q5T1V6
Length = 619
Score = 205 (77.2 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 56/135 (41%), Positives = 76/135 (56%)
Query: 115 ILSLP-DQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQ 173
IL+L DQ+ ++ ++ L ILV+G +V F LPE L L+ G + PTPIQ+Q
Sbjct: 174 ILNLQEDQIENL-KQQLGILVQGQEVTRPIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQ 232
Query: 174 GIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELA 233
IP L GRDI+ A TGSGKT F+LP++M L E+K P LI+ P+RELA
Sbjct: 233 MIPVGLLGRDILASADTGSGKTAAFLLPVIMRALF-ESKTPS-------ALILTPTRELA 284
Query: 234 RQTHDIIQYYCAALP 248
Q + + LP
Sbjct: 285 IQIERQAKELMSGLP 299
Score = 122 (48.0 bits), Expect = 0.00010, P = 0.00010
Identities = 34/85 (40%), Positives = 48/85 (56%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RDI+ A TGSGKT F+LP++M L E+K P LI+ P+RELA Q +
Sbjct: 241 RDILASADTGSGKTAAFLLPVIMRALF-ESKTPS-------ALILTPTRELAIQIERQAK 292
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSL 92
+ LP ++T L +GG+P+ L
Sbjct: 293 ELMSGLP-RMKTVLLVGGLPLPPQL 316
>UNIPROTKB|E2R4Z9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 EMBL:AAEX03005031
Ensembl:ENSCAFT00000017691 Uniprot:E2R4Z9
Length = 569
Score = 204 (76.9 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 54/135 (40%), Positives = 76/135 (56%)
Query: 115 ILSLP-DQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQ 173
IL+L DQ+ ++ +R L I+V+G DV F PE+L L+ G + PTPIQ+Q
Sbjct: 175 ILNLQEDQIENL-KRQLGIVVQGQDVTRPIIDFEHCGFPEALNHNLKTSGYEVPTPIQMQ 233
Query: 174 GIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELA 233
IP L GRD++ A TGSGKT F+LP++ L E+K P LI+ P+RELA
Sbjct: 234 MIPVGLLGRDVLASADTGSGKTAAFLLPVITRAL-CESKTPS-------ALILTPTRELA 285
Query: 234 RQTHDIIQYYCAALP 248
Q + + + LP
Sbjct: 286 IQIENQAKELMSGLP 300
Score = 119 (46.9 bits), Expect = 0.00020, P = 0.00020
Identities = 32/93 (34%), Positives = 53/93 (56%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD++ A TGSGKT F+LP++ L E+K P LI+ P+RELA Q + +
Sbjct: 242 RDVLASADTGSGKTAAFLLPVITRAL-CESKTPS-------ALILTPTRELAIQIENQAK 293
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ LP ++T L +GG+P+ L +++ ++
Sbjct: 294 ELMSGLP-RMKTVLLVGGLPLPPQLYRLRQHVK 325
>DICTYBASE|DDB_G0275443 [details] [associations]
symbol:helB1 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
ProtClustDB:CLSZ2500419 Uniprot:Q553B1
Length = 1151
Score = 208 (78.3 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 50/111 (45%), Positives = 63/111 (56%)
Query: 127 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIG 186
R L + + G D P S+ L E + L+ +KPT IQ Q IPA ++GRD+IG
Sbjct: 492 RSELGVKITGKDCPKPIQSWAQAGLTEKVHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIG 551
Query: 187 IAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
IA TGSGKTL F+LP+ L Q P GEG LI+ P+RELA Q H
Sbjct: 552 IARTGSGKTLAFLLPMFRHILAQPKSAP---GEGMIALIMSPTRELALQIH 599
Score = 166 (63.5 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 40/93 (43%), Positives = 53/93 (56%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
N RD+IGIA TGSGKTL F+LP+ L Q P GEG LI+ P+RELA Q H
Sbjct: 545 NGRDLIGIARTGSGKTLAFLLPMFRHILAQPKSAP---GEGMIALIMSPTRELALQIHVE 601
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKG 98
+ + L LRT GG +++ + +K+G
Sbjct: 602 CKKFSKVLG--LRTACVYGGASISEQIAELKRG 632
Score = 41 (19.5 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 150 KLPESLVRALEAKGIKKPTPIQVQGIP---AALSGRDII--GIAFTGSG 193
+ S+++ALE G K P ++ G+D++ FTG G
Sbjct: 866 RFSSSIIKALEQSGSKVPDELRKLNDTYEKKRKEGKDVLLAPTGFTGRG 914
>UNIPROTKB|E2R4Y9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:AAEX03005031
Ensembl:ENSCAFT00000017696 Uniprot:E2R4Y9
Length = 623
Score = 204 (76.9 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 54/135 (40%), Positives = 76/135 (56%)
Query: 115 ILSLP-DQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQ 173
IL+L DQ+ ++ +R L I+V+G DV F PE+L L+ G + PTPIQ+Q
Sbjct: 175 ILNLQEDQIENL-KRQLGIVVQGQDVTRPIIDFEHCGFPEALNHNLKTSGYEVPTPIQMQ 233
Query: 174 GIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELA 233
IP L GRD++ A TGSGKT F+LP++ L E+K P LI+ P+RELA
Sbjct: 234 MIPVGLLGRDVLASADTGSGKTAAFLLPVITRAL-CESKTPS-------ALILTPTRELA 285
Query: 234 RQTHDIIQYYCAALP 248
Q + + + LP
Sbjct: 286 IQIENQAKELMSGLP 300
Score = 119 (46.9 bits), Expect = 0.00023, P = 0.00023
Identities = 32/93 (34%), Positives = 53/93 (56%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD++ A TGSGKT F+LP++ L E+K P LI+ P+RELA Q + +
Sbjct: 242 RDVLASADTGSGKTAAFLLPVITRAL-CESKTPS-------ALILTPTRELAIQIENQAK 293
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ LP ++T L +GG+P+ L +++ ++
Sbjct: 294 ELMSGLP-RMKTVLLVGGLPLPPQLYRLRQHVK 325
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 203 (76.5 bits), Expect = 4.7e-15, P = 4.7e-15
Identities = 50/120 (41%), Positives = 70/120 (58%)
Query: 132 ILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTG 191
I V+G D P ++ + ++ L+ KPT IQ Q IP+ +SGRD+IGIA TG
Sbjct: 292 ITVKGIDCPKPIKTWAQCGVNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTG 351
Query: 192 SGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHDIIQYYCAALPIG 250
SGKTL F+LP+ L+Q P L G+GP +I+ P+RELA QT+ + A P+G
Sbjct: 352 SGKTLAFLLPMFRHILDQ----PELEEGDGPIAVILAPTRELAMQTYKEANKF--AKPLG 405
Score = 168 (64.2 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 39/96 (40%), Positives = 59/96 (61%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGPYGLIICPSRELARQTHD 64
+ RD+IGIA TGSGKTL F+LP+ L+Q P L G+GP +I+ P+RELA QT+
Sbjct: 340 SGRDVIGIAKTGSGKTLAFLLPMFRHILDQ----PELEEGDGPIAVILAPTRELAMQTYK 395
Query: 65 IIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ A P+ L+ GGV +++ + +K+G +
Sbjct: 396 EANKF--AKPLGLKVACTYGGVGISEQIADLKRGAE 429
Score = 41 (19.5 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 150 KLPESLVRALEAKGIKKPTPIQVQ----GIPAALSGRDII--GIAFTGSG 193
K+ + RA E G K P ++ A G+++ G F GSG
Sbjct: 663 KMAGEICRAFETAGCKPPADLKAMFERFKSEMAAEGKEVKLGGKGFEGSG 712
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 199 (75.1 bits), Expect = 5.3e-15, P = 5.3e-15
Identities = 49/117 (41%), Positives = 67/117 (57%)
Query: 131 RILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFT 190
++ +EG VP F LP + L K +KPT IQ P A+SGRDII IA T
Sbjct: 117 QVTLEGRGVPRPVFEFNEAPLPGQIHELLYGK-FQKPTVIQSISWPIAMSGRDIISIAKT 175
Query: 191 GSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
GSGKTL F+LP L+ +Q + GEGP L++ P+RELA+Q ++ +C +L
Sbjct: 176 GSGKTLAFMLPALVHITKQAHRQR---GEGPAVLVLLPTRELAQQVQEVSIDFCHSL 229
Score = 156 (60.0 bits), Expect = 9.1e-09, P = 9.1e-09
Identities = 37/94 (39%), Positives = 56/94 (59%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RDII IA TGSGKTL F+LP L+ +Q + GEGP L++ P+RELA+Q ++
Sbjct: 165 SGRDIISIAKTGSGKTLAFMLPALVHITKQAHRQR---GEGPAVLVLLPTRELAQQVQEV 221
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGI 99
+C +L + + TCL GG +++G+
Sbjct: 222 SIDFCHSLGLKM-TCL-FGGASKGPQARDLERGV 253
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 195 (73.7 bits), Expect = 9.6e-15, P = 9.6e-15
Identities = 46/100 (46%), Positives = 60/100 (60%)
Query: 136 GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKT 195
G++ PA SF+ + + + L A E G K PTPIQ Q IP AL GRD+IG+A TGSGKT
Sbjct: 39 GEEPAPAK-SFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAETGSGKT 97
Query: 196 LVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQ 235
F LP+L +E L +GL++ P+RELA Q
Sbjct: 98 AAFALPMLQALMEAPQTL--------FGLVLAPTRELAYQ 129
Score = 122 (48.0 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 33/91 (36%), Positives = 50/91 (54%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD+IG+A TGSGKT F LP+L +E L +GL++ P+RELA Q +
Sbjct: 84 RDVIGLAETGSGKTAAFALPMLQALMEAPQTL--------FGLVLAPTRELAYQISQAFE 135
Query: 68 YYCAALPIPLRTCLAIGGVPM-NQSLDVIKK 97
+ + + R + +GG+ M QS+ + KK
Sbjct: 136 TLGSTIGV--RCAVIVGGMDMVAQSIALGKK 164
>UNIPROTKB|D6RGI7 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] GO:GO:0005634 HGNC:HGNC:18674
ChiTaRS:DDX41 EMBL:AC145098 IPI:IPI00965661
ProteinModelPortal:D6RGI7 SMR:D6RGI7 PRIDE:D6RGI7
Ensembl:ENST00000509576 HOGENOM:HOG000205106 ArrayExpress:D6RGI7
Bgee:D6RGI7 Uniprot:D6RGI7
Length = 201
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 91 SLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMK 150
S+ + KGI Y+DPIKTSW PR +LS+ ++ H+ +R+ ILVEGD +PP SF+ MK
Sbjct: 128 SVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEMK 187
Query: 151 LPESLVRALEAKGI 164
P +V L+A G+
Sbjct: 188 FPAGVVPVLQALGL 201
>CGD|CAL0001091 [details] [associations]
symbol:orf19.672 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116 RefSeq:XP_713805.1
RefSeq:XP_713845.1 ProteinModelPortal:Q59W52 GeneID:3644491
GeneID:3644552 KEGG:cal:CaO19.672 KEGG:cal:CaO19.8289
Uniprot:Q59W52
Length = 581
Score = 196 (74.1 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 52/169 (30%), Positives = 87/169 (51%)
Query: 82 AIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPP 141
A G VP+ + + I + ++ T W + + + D+ I + + I +G ++P
Sbjct: 108 ASGFVPLIEMDEEIDDPL-FSGQESTHW-TNKNLEEMTDRDWRIFKEDYNITTKGKNIPN 165
Query: 142 ACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLP 201
+ + + LV + G ++PT +Q IP AL RD++G+A TGSGKTL F++P
Sbjct: 166 PLRYWNEGSINDKLVSIISQLGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIP 225
Query: 202 ILMFCLE-QETKLPF--LPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
+L + L E L + + E P GLI+ P+RELA Q + +C L
Sbjct: 226 VLNYILSIDENYLKYEKISNE-PVGLILAPTRELALQITKEAEKFCKKL 273
Score = 132 (51.5 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLE-QETKLPF--LPGEGPYGLIICPSRELARQTHD 64
RD++G+A TGSGKTL F++P+L + L E L + + E P GLI+ P+RELA Q
Sbjct: 206 RDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEKISNE-PVGLILAPTRELALQITK 264
Query: 65 IIQYYCAAL 73
+ +C L
Sbjct: 265 EAEKFCKKL 273
>UNIPROTKB|Q59W52 [details] [associations]
symbol:PRP28 "Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28" species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116
RefSeq:XP_713805.1 RefSeq:XP_713845.1 ProteinModelPortal:Q59W52
GeneID:3644491 GeneID:3644552 KEGG:cal:CaO19.672
KEGG:cal:CaO19.8289 Uniprot:Q59W52
Length = 581
Score = 196 (74.1 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 52/169 (30%), Positives = 87/169 (51%)
Query: 82 AIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPP 141
A G VP+ + + I + ++ T W + + + D+ I + + I +G ++P
Sbjct: 108 ASGFVPLIEMDEEIDDPL-FSGQESTHW-TNKNLEEMTDRDWRIFKEDYNITTKGKNIPN 165
Query: 142 ACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLP 201
+ + + LV + G ++PT +Q IP AL RD++G+A TGSGKTL F++P
Sbjct: 166 PLRYWNEGSINDKLVSIISQLGYEEPTSVQRASIPLALKKRDVVGVAETGSGKTLAFLIP 225
Query: 202 ILMFCLE-QETKLPF--LPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
+L + L E L + + E P GLI+ P+RELA Q + +C L
Sbjct: 226 VLNYILSIDENYLKYEKISNE-PVGLILAPTRELALQITKEAEKFCKKL 273
Score = 132 (51.5 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 30/69 (43%), Positives = 43/69 (62%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLE-QETKLPF--LPGEGPYGLIICPSRELARQTHD 64
RD++G+A TGSGKTL F++P+L + L E L + + E P GLI+ P+RELA Q
Sbjct: 206 RDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEKISNE-PVGLILAPTRELALQITK 264
Query: 65 IIQYYCAAL 73
+ +C L
Sbjct: 265 EAEKFCKKL 273
>UNIPROTKB|Q91372 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
"mitochondrial cloud" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
Length = 700
Score = 196 (74.1 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 44/105 (41%), Positives = 61/105 (58%)
Query: 134 VEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSG 193
V G DVPPA +F L E+L R + G K TP+Q IP ++GRD++ A TGSG
Sbjct: 264 VTGKDVPPAILTFEEANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSG 323
Query: 194 KTLVFVLPILMFCLEQE-TKLPFLPGEGPYGLIICPSRELARQTH 237
KT F+LPIL + + + T +L + P +II P+REL Q +
Sbjct: 324 KTAAFLLPILSYMMNEGITASQYLQLQEPEAIIIAPTRELINQIY 368
Score = 116 (45.9 bits), Expect = 0.00058, P = 0.00057
Identities = 33/94 (35%), Positives = 52/94 (55%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQE-TKLPFLPGEGPYGLIICPSRELARQTH-DI 65
RD++ A TGSGKT F+LPIL + + + T +L + P +II P+REL Q + D
Sbjct: 312 RDLMACAQTGSGKTAAFLLPILSYMMNEGITASQYLQLQEPEAIIIAPTRELINQIYLDA 371
Query: 66 IQYYCAALPIPLRTCLAIGGV-PMNQSLDVIKKG 98
++ +R + GG+ P++ DV +KG
Sbjct: 372 RKFSYGTC---VRPVVVYGGIQPVHAMRDV-EKG 401
>FB|FBgn0030631 [details] [associations]
symbol:CG6227 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
Uniprot:Q9VXW2
Length = 1224
Score = 199 (75.1 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 46/116 (39%), Positives = 66/116 (56%)
Query: 132 ILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTG 191
I V+G P ++ + + + L G +KPTPIQ Q IPA +SGRD+IGIA TG
Sbjct: 498 IQVKGKGCPKPIKTWAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTG 557
Query: 192 SGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
SGKTL F+LP+ L+Q + G+G +I+ P+REL Q I+ + +L
Sbjct: 558 SGKTLAFILPMFRHILDQPS---MEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSL 610
Score = 143 (55.4 bits), Expect = 9.3e-07, P = 9.3e-07
Identities = 34/95 (35%), Positives = 54/95 (56%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IGIA TGSGKTL F+LP+ L+Q + G+G +I+ P+REL Q
Sbjct: 546 SGRDLIGIAKTGSGKTLAFILPMFRHILDQPS---MEDGDGAIAIIMAPTRELCMQIGKD 602
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
I+ + +L LR GG +++ + +K+G +
Sbjct: 603 IRKFSKSLG--LRPVCVYGGTGISEQIAELKRGAE 635
>RGD|1359520 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1359520 GO:GO:0005524
GO:GO:0046872 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q5STU4 GeneTree:ENSGT00610000086076 CTD:83479
HOGENOM:HOG000006599 HOVERGEN:HBG106120 EMBL:BC081871
IPI:IPI00371561 RefSeq:NP_001005535.1 RefSeq:NP_001177749.1
UniGene:Rn.230507 UniGene:Rn.34313 ProteinModelPortal:Q66HG7
SMR:Q66HG7 PhosphoSite:Q66HG7 PRIDE:Q66HG7
Ensembl:ENSRNOT00000043798 GeneID:289402 KEGG:rno:289402
UCSC:RGD:1359520 NextBio:629792 ArrayExpress:Q66HG7
Genevestigator:Q66HG7 Uniprot:Q66HG7
Length = 589
Score = 194 (73.4 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 47/121 (38%), Positives = 70/121 (57%)
Query: 115 ILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQG 174
I++L D + +++ L I V+G +V F PE+L + L+ G + PTPIQ+Q
Sbjct: 174 IVALRDDQIETLKQQLGISVQGQEVARPIIDFEHCGFPETLNQNLKKSGYEVPTPIQMQM 233
Query: 175 IPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELAR 234
IP L GRDI+ A TGSGKT F+LP+++ L ++ + P LI+ P+RELA
Sbjct: 234 IPVGLLGRDILASADTGSGKTAAFLLPVIIRALPED--------KTPSALILTPTRELAI 285
Query: 235 Q 235
Q
Sbjct: 286 Q 286
Score = 122 (48.0 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 32/103 (31%), Positives = 57/103 (55%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RDI+ A TGSGKT F+LP+++ L ++ + P LI+ P+RELA Q +
Sbjct: 241 RDILASADTGSGKTAAFLLPVIIRALPED--------KTPSALILTPTRELAIQIERQAK 292
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWR 110
LP ++T L +GG+P+ L +++ ++ + +K ++
Sbjct: 293 ELMRGLP-RMKTVLLVGGLPLPPQLYRLQQHVKADTMLKMGFQ 334
>UNIPROTKB|Q66HG7 [details] [associations]
symbol:Ddx59 "Probable ATP-dependent RNA helicase DDX59"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1359520
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 GeneTree:ENSGT00610000086076 CTD:83479
HOGENOM:HOG000006599 HOVERGEN:HBG106120 EMBL:BC081871
IPI:IPI00371561 RefSeq:NP_001005535.1 RefSeq:NP_001177749.1
UniGene:Rn.230507 UniGene:Rn.34313 ProteinModelPortal:Q66HG7
SMR:Q66HG7 PhosphoSite:Q66HG7 PRIDE:Q66HG7
Ensembl:ENSRNOT00000043798 GeneID:289402 KEGG:rno:289402
UCSC:RGD:1359520 NextBio:629792 ArrayExpress:Q66HG7
Genevestigator:Q66HG7 Uniprot:Q66HG7
Length = 589
Score = 194 (73.4 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 47/121 (38%), Positives = 70/121 (57%)
Query: 115 ILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQG 174
I++L D + +++ L I V+G +V F PE+L + L+ G + PTPIQ+Q
Sbjct: 174 IVALRDDQIETLKQQLGISVQGQEVARPIIDFEHCGFPETLNQNLKKSGYEVPTPIQMQM 233
Query: 175 IPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELAR 234
IP L GRDI+ A TGSGKT F+LP+++ L ++ + P LI+ P+RELA
Sbjct: 234 IPVGLLGRDILASADTGSGKTAAFLLPVIIRALPED--------KTPSALILTPTRELAI 285
Query: 235 Q 235
Q
Sbjct: 286 Q 286
Score = 122 (48.0 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 32/103 (31%), Positives = 57/103 (55%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RDI+ A TGSGKT F+LP+++ L ++ + P LI+ P+RELA Q +
Sbjct: 241 RDILASADTGSGKTAAFLLPVIIRALPED--------KTPSALILTPTRELAIQIERQAK 292
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWR 110
LP ++T L +GG+P+ L +++ ++ + +K ++
Sbjct: 293 ELMRGLP-RMKTVLLVGGLPLPPQLYRLQQHVKADTMLKMGFQ 334
>MGI|MGI:1915247 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
Genevestigator:Q9DBN9 Uniprot:Q9DBN9
Length = 619
Score = 194 (73.4 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 48/134 (35%), Positives = 73/134 (54%)
Query: 115 ILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQG 174
I++L + + +++ L I V+G DV F PE+L + L+ G + PTPIQ+Q
Sbjct: 174 IVTLKEDQIETLKQQLGISVQGQDVARPIIDFEHCGFPETLNQNLKKSGYEVPTPIQMQM 233
Query: 175 IPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELAR 234
IP L GRDI+ A TGSGKT F+LP+++ ++ + P LI+ P+RELA
Sbjct: 234 IPVGLLGRDILASADTGSGKTAAFLLPVIIRAFSED--------KTPSALILTPTRELAI 285
Query: 235 QTHDIIQYYCAALP 248
Q + + LP
Sbjct: 286 QIERQAKELMSGLP 299
Score = 118 (46.6 bits), Expect = 0.00029, P = 0.00029
Identities = 30/93 (32%), Positives = 52/93 (55%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RDI+ A TGSGKT F+LP+++ ++ + P LI+ P+RELA Q +
Sbjct: 241 RDILASADTGSGKTAAFLLPVIIRAFSED--------KTPSALILTPTRELAIQIERQAK 292
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ LP ++T L +GG+P+ L +++ ++
Sbjct: 293 ELMSGLP-RMKTVLLVGGLPLPPQLYRLRQHVK 324
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 194 (73.4 bits), Expect = 2.4e-14, P = 2.4e-14
Identities = 47/143 (32%), Positives = 81/143 (56%)
Query: 97 KGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLV 156
K I ++D WR + + ++ + I++ + I ++GDD+P ++ LP ++
Sbjct: 206 KKIDWDD---VPWRE-KPLEAMKPRDWRILKEDYNISIKGDDLPNPLRNWEEAGLPSEML 261
Query: 157 RALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL 216
+ L+ K+P+ IQ IP L +D+IGIA TGSGKT F++P+++ +KLP L
Sbjct: 262 KVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAI----SKLPPL 317
Query: 217 PGE----GPYGLIICPSRELARQ 235
GPY +++ P+RELA+Q
Sbjct: 318 TESNMHLGPYAVVLAPTRELAQQ 340
Score = 124 (48.7 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 31/82 (37%), Positives = 48/82 (58%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGE----GPYGLIICPSRELARQTH 63
+D+IGIA TGSGKT F++P+++ +KLP L GPY +++ P+RELA+Q
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAI----SKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
Query: 64 DIIQYYCAALPIPLRTCLAIGG 85
++ A P+ R +GG
Sbjct: 343 --VEGNKFAEPLGFRCVSVVGG 362
>ASPGD|ASPL0000055571 [details] [associations]
symbol:AN1266 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
Uniprot:Q5BDW4
Length = 1173
Score = 196 (74.1 bits), Expect = 3.4e-14, P = 3.4e-14
Identities = 52/151 (34%), Positives = 78/151 (51%)
Query: 99 IQYNDPIKTS-WRAPRCILSLPDQVHDIIRRNLR-ILVEGDDVPPACCSFRLMKLPESLV 156
++Y +P + + P + + ++ +R L I V G DVP + L +
Sbjct: 495 VEY-EPFRRKFYTEPSDLAQMSEEEAANLRLELDGIKVRGLDVPKPVQKWSQCGLGIQTL 553
Query: 157 RALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL 216
++ G T IQ Q IPA +SGRD+IG+A TGSGKT+ F++P+ +Q P
Sbjct: 554 DVIDKLGFASLTSIQAQAIPAIMSGRDVIGVAKTGSGKTMAFLIPMFRHIKDQR---PLE 610
Query: 217 PGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
EGP GLI+ P+RELA Q H + + AL
Sbjct: 611 NMEGPIGLIMTPTRELATQIHKDCKPFLKAL 641
Score = 168 (64.2 bits), Expect = 7.9e-10, P = 7.9e-10
Identities = 38/95 (40%), Positives = 55/95 (57%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD+IG+A TGSGKT+ F++P+ +Q P EGP GLI+ P+RELA Q H
Sbjct: 577 SGRDVIGVAKTGSGKTMAFLIPMFRHIKDQR---PLENMEGPIGLIMTPTRELATQIHKD 633
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + AL LR A GG P+ + +K+G +
Sbjct: 634 CKPFLKALN--LRAVCAYGGAPIKDQIAELKRGAE 666
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 195 (73.7 bits), Expect = 3.9e-14, P = 3.9e-14
Identities = 53/139 (38%), Positives = 73/139 (52%)
Query: 104 PIKTSWRAPRCILSLPDQVH----DIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRAL 159
P K+ R P + S PD H +I R+ + G+++P +F LP ++R L
Sbjct: 393 PNKSLVR-PHFVTS-PDVPHLSPVEIYRKQHEVTTTGENIPAPYITFESSGLPPEILREL 450
Query: 160 EAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGE 219
+ G PTPIQ Q P AL RDI+ IA TGSGKTL +++P F L + +
Sbjct: 451 LSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPA--FILLRHCRND--SRN 506
Query: 220 GPYGLIICPSRELARQTHD 238
GP LI+ P+RELA Q D
Sbjct: 507 GPTVLILAPTRELATQIQD 525
Score = 121 (47.7 bits), Expect = 0.00027, P = 0.00027
Identities = 36/92 (39%), Positives = 49/92 (53%)
Query: 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 66
SRDI+ IA TGSGKTL +++P F L + + GP LI+ P+RELA Q D
Sbjct: 472 SRDIVAIAKTGSGKTLGYLIPA--FILLRHCRND--SRNGPTVLILAPTRELATQIQDEA 527
Query: 67 QYYCAALPIPLRTCLAIGGVPMNQSLDVIKKG 98
+ + I TCL GG P L +++G
Sbjct: 528 LRFGRSSRISC-TCL-YGGAPKGPQLKELERG 557
>WB|WBGene00011032 [details] [associations]
symbol:R05D11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486 KO:K14779
OMA:NVMKQSG EMBL:Z75546 PIR:T23922 RefSeq:NP_492326.1
ProteinModelPortal:Q21736 SMR:Q21736 STRING:Q21736 PaxDb:Q21736
EnsemblMetazoa:R05D11.4.1 EnsemblMetazoa:R05D11.4.2 GeneID:172651
KEGG:cel:CELE_R05D11.4 UCSC:R05D11.4 CTD:172651 WormBase:R05D11.4
InParanoid:Q21736 NextBio:876429 Uniprot:Q21736
Length = 581
Score = 191 (72.3 bits), Expect = 4.1e-14, P = 4.1e-14
Identities = 46/130 (35%), Positives = 67/130 (51%)
Query: 124 DIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRD 183
D IRR RI GD +P F + SL+ L I++P+PIQ+Q IP R+
Sbjct: 106 DDIRRTNRIFTWGDHLPNIILRFSDSSMSPSLLNRLSENSIRQPSPIQMQSIPFMTERRN 165
Query: 184 IIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGP--YGLIICPSRELARQTHDIIQ 241
++ A TGSGKTL F LP++ LE + + + +++ P+RELA QT+
Sbjct: 166 VLASAPTGSGKTLAFALPVIDEILELKQRADYSSSNSSKLLAVVLEPTRELAAQTYTEFL 225
Query: 242 YYCAALPIGS 251
YCA I +
Sbjct: 226 KYCANTSISA 235
>UNIPROTKB|I3LV06 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:FP312674 RefSeq:XP_003357711.1
Ensembl:ENSSSCT00000031167 GeneID:100621580 KEGG:ssc:100621580
Uniprot:I3LV06
Length = 607
Score = 191 (72.3 bits), Expect = 4.4e-14, P = 4.4e-14
Identities = 50/129 (38%), Positives = 68/129 (52%)
Query: 120 DQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAAL 179
DQ+ ++ R L I+VEG VP F PE+L L+ G + PTPIQ+Q IP L
Sbjct: 168 DQIENL-RGQLGIVVEGRGVPRPIIDFGHCGFPETLNFNLKTAGYEVPTPIQMQMIPVGL 226
Query: 180 SGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 239
GRD++ A TGSGKT F+LP++ L Q + P L++ P+RELA Q
Sbjct: 227 LGRDLLASADTGSGKTAAFLLPVITRALVQS--------KAPSALVLTPTRELAIQIERQ 278
Query: 240 IQYYCAALP 248
+ LP
Sbjct: 279 AKELMGGLP 287
Score = 124 (48.7 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 32/93 (34%), Positives = 49/93 (52%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD++ A TGSGKT F+LP++ L Q + P L++ P+RELA Q +
Sbjct: 229 RDLLASADTGSGKTAAFLLPVITRALVQS--------KAPSALVLTPTRELAIQIERQAK 280
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
LP +RT L +GG+P L +++ +Q
Sbjct: 281 ELMGGLP-RMRTALLVGGLPAPPQLHRLRQRVQ 312
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 188 (71.2 bits), Expect = 5.2e-14, P = 5.2e-14
Identities = 41/107 (38%), Positives = 64/107 (59%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+F +KL +++A+ A G +PTP+Q +P AL D++ A TG+GKT FVLP
Sbjct: 2 TFAELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLP--- 58
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIGS 251
L++ + P PG GP L++ P+RELA+Q D ++ Y A + + S
Sbjct: 59 -ALQRLSSPPQGPGRGPRVLVLTPTRELAQQVTDAVRTYGAFMRVRS 104
Score = 143 (55.4 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 42/130 (32%), Positives = 70/130 (53%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 68
D++ A TG+GKT FVLP L++ + P PG GP L++ P+RELA+Q D ++
Sbjct: 40 DLLATAQTGTGKTAAFVLP----ALQRLSSPPQGPGRGPRVLVLTPTRELAQQVTDAVRT 95
Query: 69 YCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVH-DIIR 127
Y A + + R+ +GG+P + L ++ + + + T R ++ L D+ D+ R
Sbjct: 96 YGAFMRV--RSGAILGGMPYHAQLRLLSAPVDFI--VATPGR----LVDLLDRRSLDLSR 147
Query: 128 RNLRILVEGD 137
L +L E D
Sbjct: 148 LELLVLDEAD 157
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 188 (71.2 bits), Expect = 5.3e-14, P = 5.3e-14
Identities = 45/108 (41%), Positives = 63/108 (58%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
SF + L ++RA+ +G ++PTPIQ Q IPA L GRD++ A TG+GKT F LP+L
Sbjct: 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61
Query: 205 FCLEQETKLPFLPGEGPY-GLIICPSRELARQTHDIIQYYCAALPIGS 251
+ T+ P G P LI+ P+RELA Q + ++ Y L I S
Sbjct: 62 HLI---TRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRS 106
Score = 126 (49.4 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 33/93 (35%), Positives = 51/93 (54%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPY-GLIICPSRELARQTHDII 66
RD++ A TG+GKT F LP+L + T+ P G P LI+ P+RELA Q + +
Sbjct: 39 RDLMASAQTGTGKTAGFTLPLLQHLI---TRQPHAKGRRPVRALILTPTRELAAQIGENV 95
Query: 67 QYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGI 99
+ Y L I R+ + GGV +N + ++ G+
Sbjct: 96 RDYSKYLNI--RSLVVFGGVSINPQMMKLRGGV 126
>UNIPROTKB|F1NQA6 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 EMBL:AADN02025730
IPI:IPI00822952 Ensembl:ENSGALT00000039070 ArrayExpress:F1NQA6
Uniprot:F1NQA6
Length = 603
Score = 190 (71.9 bits), Expect = 5.6e-14, P = 5.6e-14
Identities = 48/115 (41%), Positives = 67/115 (58%)
Query: 127 RRNLRILVEGDDVPPACCSFRLM----KLPESLVRALEAKGIKKPTPIQVQGIPAALSGR 182
R RI V+G D+P +F + K+ ++ ++A G + PTPIQ+Q IP L GR
Sbjct: 138 RNQHRINVQGTDLPDPIATFDQLQKEYKIHPKVIENIQAAGFQVPTPIQMQAIPVMLHGR 197
Query: 183 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
+++ A TGSGKTL F +P+L L+Q P +G LII P+RELA QTH
Sbjct: 198 ELLASAPTGSGKTLAFCIPLLTH-LKQ----PM--NKGFRALIISPTRELASQTH 245
>UNIPROTKB|E1C4M1 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:AADN02025730 IPI:IPI00593921 ProteinModelPortal:E1C4M1
Ensembl:ENSGALT00000008815 ArrayExpress:E1C4M1 Uniprot:E1C4M1
Length = 604
Score = 190 (71.9 bits), Expect = 5.6e-14, P = 5.6e-14
Identities = 48/115 (41%), Positives = 67/115 (58%)
Query: 127 RRNLRILVEGDDVPPACCSFRLM----KLPESLVRALEAKGIKKPTPIQVQGIPAALSGR 182
R RI V+G D+P +F + K+ ++ ++A G + PTPIQ+Q IP L GR
Sbjct: 138 RNQHRINVQGTDLPDPIATFDQLQKEYKIHPKVIENIQAAGFQVPTPIQMQAIPVMLHGR 197
Query: 183 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
+++ A TGSGKTL F +P+L L+Q P +G LII P+RELA QTH
Sbjct: 198 ELLASAPTGSGKTLAFCIPLLTH-LKQ----PM--NKGFRALIISPTRELASQTH 245
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 190 (71.9 bits), Expect = 5.9e-14, P = 5.9e-14
Identities = 44/113 (38%), Positives = 62/113 (54%)
Query: 128 RNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGI 187
R I V G VPP SF P L+R + + G PTPIQ Q P A+ GRDI+ I
Sbjct: 142 RRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAI 201
Query: 188 AFTGSGKTLVFVLPILMFC--LEQETKLPFLPGEGPYGLIICPSRELARQTHD 238
A TGSGKTL +++P + + ++++ GP L++ P+RELA Q +
Sbjct: 202 AKTGSGKTLGYLIPGFLHLQRIRNDSRM------GPTILVLSPTRELATQIQE 248
>DICTYBASE|DDB_G0293064 [details] [associations]
symbol:DDB_G0293064 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
Length = 573
Score = 189 (71.6 bits), Expect = 6.6e-14, P = 6.6e-14
Identities = 53/154 (34%), Positives = 83/154 (53%)
Query: 96 KKGIQYNDPIKTSWRAPRCILSLP--DQVH--DIIRR-NLRILVEGDDVPPACCSFRLMK 150
K+ I ++D +K + ++ LP DQ D I+ + I E + P +
Sbjct: 86 KREINWDDELKNMAPIRKRLIDLPTEDQQETMDFIKEFEISIKKENNFYLPKPID-TIES 144
Query: 151 LP-ESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQ 209
+P +S ++ +K +KPTP+Q G P ALSG D++GI+ TGSGKTL F+LP + L Q
Sbjct: 145 VPFQSTIKNFLSKKFEKPTPVQSLGWPIALSGSDMLGISKTGSGKTLSFILPAIEHILAQ 204
Query: 210 ETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243
+ + PG P L++ P+RELA Q + + Y
Sbjct: 205 PRQ-SYYPG--PSVLVVAPTRELANQINQEAEQY 235
Score = 129 (50.5 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 33/90 (36%), Positives = 51/90 (56%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 68
D++GI+ TGSGKTL F+LP + L Q + + PG P L++ P+RELA Q + +
Sbjct: 178 DMLGISKTGSGKTLSFILPAIEHILAQPRQ-SYYPG--PSVLVVAPTRELANQINQEAEQ 234
Query: 69 YCAALPIPLRTCLAIGGVPM-NQSLDVIKK 97
Y + I + T GG P +Q L + ++
Sbjct: 235 YLRLVNIEIATIY--GGAPRRSQQLQLSRR 262
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 187 (70.9 bits), Expect = 6.7e-14, P = 6.7e-14
Identities = 44/106 (41%), Positives = 61/106 (57%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
F + L +++A+E KG P+PIQ+Q IPA L+G+D++ A TG+GKT F LPIL
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL-- 60
Query: 206 CLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIGS 251
E K P + LI+ P+RELA Q D + Y LP+ S
Sbjct: 61 --ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKS 104
Score = 125 (49.1 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 34/91 (37%), Positives = 48/91 (52%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
+D++ A TG+GKT F LPIL E K P + LI+ P+RELA Q D +
Sbjct: 39 KDVMAAAQTGTGKTAGFTLPIL----ELLAKGPKVRANQVRALILTPTRELAAQIQDNVM 94
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKG 98
Y LP L++ + GGV +N + + KG
Sbjct: 95 LYGRHLP--LKSAVVFGGVKINPQMQRMCKG 123
Score = 39 (18.8 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 150 KLPESLV--RALEAKGIKKPTPIQVQG 174
+LPES + R L+ K KKP ++ G
Sbjct: 379 QLPESKLDTRPLKPKKPKKPKKVEGAG 405
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 187 (70.9 bits), Expect = 6.7e-14, P = 6.7e-14
Identities = 44/106 (41%), Positives = 61/106 (57%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
F + L +++A+E KG P+PIQ+Q IPA L+G+D++ A TG+GKT F LPIL
Sbjct: 3 FTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL-- 60
Query: 206 CLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIGS 251
E K P + LI+ P+RELA Q D + Y LP+ S
Sbjct: 61 --ELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKS 104
Score = 125 (49.1 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 34/91 (37%), Positives = 48/91 (52%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
+D++ A TG+GKT F LPIL E K P + LI+ P+RELA Q D +
Sbjct: 39 KDVMAAAQTGTGKTAGFTLPIL----ELLAKGPKVRANQVRALILTPTRELAAQIQDNVM 94
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKG 98
Y LP L++ + GGV +N + + KG
Sbjct: 95 LYGRHLP--LKSAVVFGGVKINPQMQRMCKG 123
Score = 39 (18.8 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 150 KLPESLV--RALEAKGIKKPTPIQVQG 174
+LPES + R L+ K KKP ++ G
Sbjct: 379 QLPESKLDTRPLKPKKPKKPKKVEGAG 405
>UNIPROTKB|A8MTP9 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000242486
HOVERGEN:HBG051332 EMBL:AC091199 HGNC:HGNC:20038
PharmGKB:PA134904836 ChiTaRS:DDX52 NextBio:42007 IPI:IPI00394982
ProteinModelPortal:A8MTP9 SMR:A8MTP9 STRING:A8MTP9 PRIDE:A8MTP9
Ensembl:ENST00000394367 ArrayExpress:A8MTP9 Bgee:A8MTP9
Uniprot:A8MTP9
Length = 491
Score = 187 (70.9 bits), Expect = 8.0e-14, P = 8.0e-14
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 124 DIIRRNLRILVEGDDVPPACCSFRLM----KLPESLVRALEAKGIKKPTPIQVQGIPAAL 179
+ +R +I V+G D+P +F+ + K+ L++ + G + PTPIQ+Q IP L
Sbjct: 33 NFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVML 92
Query: 180 SGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
GR+++ A TGSGKTL F +PILM + K P +G LII P+RELA Q H
Sbjct: 93 HGRELLASAPTGSGKTLAFSIPILM-----QLKQP--ANKGFRALIISPTRELASQIH 143
>UNIPROTKB|A5D7C1 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:BC140501 IPI:IPI00692860
RefSeq:NP_001096708.1 UniGene:Bt.51117 ProteinModelPortal:A5D7C1
SMR:A5D7C1 PRIDE:A5D7C1 Ensembl:ENSBTAT00000013622 GeneID:510826
KEGG:bta:510826 CTD:11056 GeneTree:ENSGT00550000074863
HOGENOM:HOG000242486 HOVERGEN:HBG051332 InParanoid:A5D7C1 KO:K14779
OMA:NVMKQSG OrthoDB:EOG4XKV6Q NextBio:20869637 ArrayExpress:A5D7C1
Uniprot:A5D7C1
Length = 596
Score = 188 (71.2 bits), Expect = 9.0e-14, P = 9.0e-14
Identities = 48/118 (40%), Positives = 68/118 (57%)
Query: 124 DIIRRNLRILVEGDDVPPACCSFRLM----KLPESLVRALEAKGIKKPTPIQVQGIPAAL 179
+ R +I V+G D+P +F+ + K+ L++ + G + PTPIQ+Q IP L
Sbjct: 139 NFFRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQTPTPIQMQAIPVML 198
Query: 180 SGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
GR+++ A TGSGKTL F +PILM L+Q T +G LII P+RELA Q H
Sbjct: 199 HGRELLASAPTGSGKTLAFSIPILMH-LKQPTN------KGFRALIISPTRELASQIH 249
>UNIPROTKB|E9PT29 [details] [associations]
symbol:Ddx17 "Protein Ddx17" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 IPI:IPI00858352
PRIDE:E9PT29 Ensembl:ENSRNOT00000018185 Uniprot:E9PT29
Length = 651
Score = 188 (71.2 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 46/105 (43%), Positives = 62/105 (59%)
Query: 119 PDQVHDIIRRNLRILVEGDDV-PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPA 177
P +V D +RR I V G DV P +F P+ ++ L + +PTPIQ QG P
Sbjct: 67 PYEV-DELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPL 125
Query: 178 ALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP-GEGP 221
ALSGRD++GIA TGSGKTL ++LP ++ Q P+L G+GP
Sbjct: 126 ALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQ----PYLERGDGP 166
>UNIPROTKB|J9P4L6 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:AAEX03026218 Ensembl:ENSCAFT00000021498 Uniprot:J9P4L6
Length = 598
Score = 187 (70.9 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 48/118 (40%), Positives = 68/118 (57%)
Query: 124 DIIRRNLRILVEGDDVPPACCSFRLM----KLPESLVRALEAKGIKKPTPIQVQGIPAAL 179
+ R +I V+G D+P +F+ + K+ L++ + G + PTPIQ+Q IP L
Sbjct: 140 NFFRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQTPTPIQMQAIPVML 199
Query: 180 SGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
GR+++ A TGSGKTL F +PILM L+Q T +G LII P+RELA Q H
Sbjct: 200 HGRELLASAPTGSGKTLAFSIPILMQ-LKQPTN------KGFRALIISPTRELANQIH 250
>UNIPROTKB|Q9Y2R4 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AF077033 EMBL:AK001652 EMBL:AK093661 EMBL:AC091199
EMBL:BC041785 EMBL:AJ010840 IPI:IPI00032423 RefSeq:NP_008941.2
UniGene:Hs.590937 PDB:3DKP PDBsum:3DKP ProteinModelPortal:Q9Y2R4
SMR:Q9Y2R4 IntAct:Q9Y2R4 STRING:Q9Y2R4 PhosphoSite:Q9Y2R4
DMDM:296439375 SWISS-2DPAGE:Q9Y2R4 PaxDb:Q9Y2R4 PRIDE:Q9Y2R4
Ensembl:ENST00000349699 GeneID:11056 KEGG:hsa:11056 UCSC:uc002hoh.2
GeneCards:GC17M035969 HGNC:HGNC:20038 MIM:612500 neXtProt:NX_Q9Y2R4
PharmGKB:PA134904836 InParanoid:Q9Y2R4 PhylomeDB:Q9Y2R4
ChiTaRS:DDX52 EvolutionaryTrace:Q9Y2R4 GenomeRNAi:11056
NextBio:42007 ArrayExpress:Q9Y2R4 Bgee:Q9Y2R4 CleanEx:HS_DDX52
Genevestigator:Q9Y2R4 GermOnline:ENSG00000141141 Uniprot:Q9Y2R4
Length = 599
Score = 187 (70.9 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 124 DIIRRNLRILVEGDDVPPACCSFRLM----KLPESLVRALEAKGIKKPTPIQVQGIPAAL 179
+ +R +I V+G D+P +F+ + K+ L++ + G + PTPIQ+Q IP L
Sbjct: 141 NFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVML 200
Query: 180 SGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
GR+++ A TGSGKTL F +PILM + K P +G LII P+RELA Q H
Sbjct: 201 HGRELLASAPTGSGKTLAFSIPILM-----QLKQP--ANKGFRALIISPTRELASQIH 251
>UNIPROTKB|E2RB54 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:ERESINT
EMBL:AAEX03006616 Ensembl:ENSCAFT00000028820 Uniprot:E2RB54
Length = 601
Score = 187 (70.9 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 48/118 (40%), Positives = 68/118 (57%)
Query: 124 DIIRRNLRILVEGDDVPPACCSFRLM----KLPESLVRALEAKGIKKPTPIQVQGIPAAL 179
+ R +I V+G D+P +F+ + K+ L++ + G + PTPIQ+Q IP L
Sbjct: 143 NFFRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQTPTPIQMQAIPVML 202
Query: 180 SGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
GR+++ A TGSGKTL F +PILM L+Q T +G LII P+RELA Q H
Sbjct: 203 HGRELLASAPTGSGKTLAFSIPILMQ-LKQPTN------KGFRALIISPTRELANQIH 253
>ASPGD|ASPL0000000390 [details] [associations]
symbol:AN6374 species:162425 "Emericella nidulans"
[GO:0000463 "maturation of LSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IEA] [GO:0033680 "ATP-dependent DNA/RNA
helicase activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000107 EMBL:BN001301 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14810
RefSeq:XP_663978.1 ProteinModelPortal:Q5AZA6 STRING:Q5AZA6
EnsemblFungi:CADANIAT00006610 GeneID:2871271 KEGG:ani:AN6374.2
HOGENOM:HOG000253015 OMA:TFLMSAT OrthoDB:EOG4DFSWQ Uniprot:Q5AZA6
Length = 610
Score = 187 (70.9 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 42/100 (42%), Positives = 59/100 (59%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
F + L L +AL + KPTP+Q + IP AL G+DI+ A TGSGKT +VLPIL
Sbjct: 30 FETLNLDPRLRQALVKEKFSKPTPVQAKAIPLALEGKDILARAKTGSGKTAAYVLPILQT 89
Query: 206 CLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCA 245
L+++ P + + GLI+ P+RELA Q +I + A
Sbjct: 90 ILQKKAIDPSM--KATTGLILVPTRELAEQVQKVITTFAA 127
Score = 116 (45.9 bits), Expect = 0.00048, P = 0.00048
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
+DI+ A TGSGKT +VLPIL L+++ P + + GLI+ P+RELA Q +I
Sbjct: 66 KDILARAKTGSGKTAAYVLPILQTILQKKAIDPSM--KATTGLILVPTRELAEQVQKVIT 123
Query: 68 YYCA 71
+ A
Sbjct: 124 TFAA 127
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 187 (70.9 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 46/105 (43%), Positives = 61/105 (58%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPIL- 203
SF + L E+LVRA+EA G +PTP+Q + IPA L GRD++ A TG+GKT F LPIL
Sbjct: 2 SFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 204 -MFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
+F K P L++ P+RELA Q H+ + Y L
Sbjct: 62 RLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDL 106
Score = 117 (46.2 bits), Expect = 0.00038, P = 0.00038
Identities = 33/94 (35%), Positives = 48/94 (51%)
Query: 8 RDIIGIAFTGSGKTLVFVLPIL--MFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
RD++ A TG+GKT F LPIL +F K P L++ P+RELA Q H+
Sbjct: 39 RDLMVAAQTGTGKTGGFALPILERLFPNGVPDKSQRHGPRQPRVLVLTPTRELAAQVHES 98
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGI 99
+ Y L + C+ GGV MN + + +G+
Sbjct: 99 FKLYARDLKF-VSACI-FGGVGMNPQVQAMSRGV 130
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 186 (70.5 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 46/105 (43%), Positives = 60/105 (57%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPIL- 203
SF + L E+LV A+EA G +PTP+Q + IPA L GRD++ A TG+GKT F LPIL
Sbjct: 2 SFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILE 61
Query: 204 -MFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
+F K P L++ P+RELA Q HD + Y L
Sbjct: 62 RLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDL 106
Score = 122 (48.0 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 34/94 (36%), Positives = 48/94 (51%)
Query: 8 RDIIGIAFTGSGKTLVFVLPIL--MFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
RD++ A TG+GKT F LPIL +F K P L++ P+RELA Q HD
Sbjct: 39 RDLMVAAQTGTGKTGGFALPILERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDS 98
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGI 99
+ Y L + C+ GGV MN + + +G+
Sbjct: 99 FKLYARDLKF-VSACI-FGGVGMNPQVQAMARGV 130
Score = 38 (18.4 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 160 EAKGIKKPTPIQVQGIPAALSG 181
E+K + PTP Q+ +P+ G
Sbjct: 591 ESKADRFPTPEQLDQLPSRPRG 612
>RGD|621743 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=NAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:621743
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
CTD:11056 GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AB055628 IPI:IPI00201365 RefSeq:NP_445977.1 UniGene:Rn.18605
ProteinModelPortal:Q99PT0 SMR:Q99PT0 PRIDE:Q99PT0
Ensembl:ENSRNOT00000003600 GeneID:85432 KEGG:rno:85432
InParanoid:Q99PT0 NextBio:617542 Genevestigator:Q99PT0
GermOnline:ENSRNOG00000002612 Uniprot:Q99PT0
Length = 598
Score = 185 (70.2 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 50/119 (42%), Positives = 69/119 (57%)
Query: 124 DIIRRNLRILVEGDDVPPACCSFRLM----KL-PESLVRALEAKGIKKPTPIQVQGIPAA 178
+ R +I V+G D+P +F+ + K+ P L L+A G + PTPIQ+Q IP
Sbjct: 142 NFFRNKHKIHVQGTDLPDPIATFQQLDQEYKISPRLLQNILDA-GFQVPTPIQMQAIPVM 200
Query: 179 LSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
L GR+++ A TGSGKTL F +PILM L+Q T +G L+I P+RELA Q H
Sbjct: 201 LHGRELLASAPTGSGKTLAFSIPILMQ-LKQPTN------KGFRALVISPTRELASQIH 252
>ZFIN|ZDB-GENE-060623-1 [details] [associations]
symbol:ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
52" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-060623-1
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:11056 HOVERGEN:HBG051332 KO:K14779
OrthoDB:EOG4XKV6Q EMBL:BC117610 IPI:IPI00627696
RefSeq:NP_001037780.1 UniGene:Dr.13799 ProteinModelPortal:Q1ECZ5
STRING:Q1ECZ5 GeneID:407696 KEGG:dre:407696 NextBio:20818558
Uniprot:Q1ECZ5
Length = 606
Score = 185 (70.2 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 49/116 (42%), Positives = 65/116 (56%)
Query: 126 IRRNLRILVEGDDVPPACCSFR-LMK---LPESLVRALEAKGIKKPTPIQVQGIPAALSG 181
IR RI V G D+P +F L K L ++ ++A G + PTPIQ+Q +P +
Sbjct: 145 IRHQNRINVHGTDIPDPVTTFEELQKEYDLDPRIIHNIKAAGFQTPTPIQMQAVPLMMHK 204
Query: 182 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
R+I+ A TGSGKT+ F LP+L L Q P +G LII P+RELA QTH
Sbjct: 205 REILACAPTGSGKTMAFCLPLLAH-LRQ----PL--NKGFRALIISPTRELATQTH 253
>UNIPROTKB|F8WDT8 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:AC004938 HGNC:HGNC:18193 IPI:IPI00925990
ProteinModelPortal:F8WDT8 SMR:F8WDT8 Ensembl:ENST00000446987
ArrayExpress:F8WDT8 Bgee:F8WDT8 Uniprot:F8WDT8
Length = 185
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 40/103 (38%), Positives = 60/103 (58%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
F M L L++A+ G +PT IQ + IP AL G+D++ A TGSGKT + +P+L
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68
Query: 206 CLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY---YCA 245
L ++ P + + GL++ P++ELARQ +IQ YCA
Sbjct: 69 LLHRKATGPVVE-QAVRGLVLVPTKELARQAQSMIQQLATYCA 110
Score = 115 (45.5 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
+D++ A TGSGKT + +P+L L ++ P + + GL++ P++ELARQ +IQ
Sbjct: 45 KDLLARARTGSGKTAAYAIPMLQLLLHRKATGPVVE-QAVRGLVLVPTKELARQAQSMIQ 103
Query: 68 Y---YCA 71
YCA
Sbjct: 104 QLATYCA 110
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 185 (70.2 bits), Expect = 2.8e-13, P = 2.8e-13
Identities = 47/120 (39%), Positives = 66/120 (55%)
Query: 124 DIIRRNLRILVEGDD----VPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAAL 179
+I ++N EGD + SF+ M L +++ L G + PT IQ + IP AL
Sbjct: 236 EIAKKNA-FFAEGDKEKSMMTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLAL 294
Query: 180 SGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 239
G+DI+G A TGSGKT F++PIL L + K+P LI+CP+RELA Q H +
Sbjct: 295 LGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRV-----LILCPTRELAMQCHSV 349
Score = 137 (53.3 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 34/90 (37%), Positives = 49/90 (54%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
+DI+G A TGSGKT F++PIL L + K+P LI+CP+RELA Q H +
Sbjct: 297 KDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRV-----LILCPTRELAMQCHSVAT 351
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKK 97
+ I + CL IGG+ + ++K
Sbjct: 352 KIASFTDIMV--CLCIGGLSLKLQEQELRK 379
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 185 (70.2 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 43/95 (45%), Positives = 58/95 (61%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
SF+ M L ++R L + G KPTPIQ + IP AL G+D++G A TGSGKT FV+PIL
Sbjct: 256 SFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIALMGKDVVGGAVTGSGKTAAFVVPILE 315
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 239
L + K+P +I+ P+RELA Q H +
Sbjct: 316 RLLYRPKKVPT-----SRVVILAPTRELAIQCHAV 345
Score = 120 (47.3 bits), Expect = 0.00024, P = 0.00024
Identities = 31/81 (38%), Positives = 46/81 (56%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
+D++G A TGSGKT FV+PIL L + K+P +I+ P+RELA Q H +
Sbjct: 293 KDVVGGAVTGSGKTAAFVVPILERLLYRPKKVPT-----SRVVILAPTRELAIQCHAVAT 347
Query: 68 YYCAALPIPLRTCLAIGGVPM 88
+ I + CLA+GG+ +
Sbjct: 348 KLASHTDI--KFCLAVGGLSL 366
>SGD|S000000441 [details] [associations]
symbol:PRP5 "RNA helicase in the DEAD-box family"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000348 "mRNA branch
site recognition" evidence=TAS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000000441 GO:GO:0005524
GO:GO:0005681 EMBL:BK006936 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008186
GeneTree:ENSGT00610000086076 KO:K12811 HOGENOM:HOG000007229
GO:GO:0000348 OMA:SLVIIYN OrthoDB:EOG40CMR1 EMBL:M33191 EMBL:Z36106
EMBL:AY692817 PIR:A35791 RefSeq:NP_009796.1
ProteinModelPortal:P21372 SMR:P21372 DIP:DIP-88N IntAct:P21372
MINT:MINT-403988 STRING:P21372 PaxDb:P21372 EnsemblFungi:YBR237W
GeneID:852539 KEGG:sce:YBR237W CYGD:YBR237w NextBio:971604
Genevestigator:P21372 GermOnline:YBR237W Uniprot:P21372
Length = 849
Score = 185 (70.2 bits), Expect = 3.3e-13, P = 3.3e-13
Identities = 47/135 (34%), Positives = 76/135 (56%)
Query: 115 ILSLPDQVHDIIRRNL-RILVEGDDVPPACCSFRLMKLP-ESLVRALEAKGIKKPTPIQV 172
+ S+ + + +R +L I ++G P + + L +++V E TPIQ
Sbjct: 225 VSSMSEMEVEELRLSLDNIKIKGTGCPKPVTKWSQLGLSTDTMVLITEKLHFGSLTPIQS 284
Query: 173 QGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGE-GPYGLIICPSRE 231
Q +PA +SGRD+IGI+ TGSGKT+ ++LP+L + + + P E GP GLI+ P+RE
Sbjct: 285 QALPAIMSGRDVIGISKTGSGKTISYLLPLLR---QVKAQRPLSKHETGPMGLILAPTRE 341
Query: 232 LARQTHDIIQYYCAA 246
LA Q H+ + + A
Sbjct: 342 LALQIHEEVTKFTEA 356
Score = 153 (58.9 bits), Expect = 3.8e-08, P = 3.8e-08
Identities = 35/96 (36%), Positives = 57/96 (59%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGE-GPYGLIICPSRELARQTHD 64
+ RD+IGI+ TGSGKT+ ++LP+L + + + P E GP GLI+ P+RELA Q H+
Sbjct: 292 SGRDVIGISKTGSGKTISYLLPLLR---QVKAQRPLSKHETGPMGLILAPTRELALQIHE 348
Query: 65 IIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + A +R+ GG M + + +K+G +
Sbjct: 349 EVTKFTEA-DTSIRSVCCTGGSEMKKQITDLKRGTE 383
>UNIPROTKB|I3LJA0 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:FP565631 EMBL:FP312903 Ensembl:ENSSSCT00000024730
Uniprot:I3LJA0
Length = 507
Score = 184 (69.8 bits), Expect = 3.6e-13, P = 3.6e-13
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 124 DIIRRNLRILVEGDDVPPACCSFRLM----KLPESLVRALEAKGIKKPTPIQVQGIPAAL 179
+ R +I V+G D+P +F+ + K+ L++ + G + PTPIQ+Q IP L
Sbjct: 49 NFFRNKHKIHVQGTDLPDPITTFQQLDQEYKISSRLLQNILDAGFQLPTPIQMQAIPVML 108
Query: 180 SGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
GR+++ A TGSGKTL F +PILM L+Q T +G L+I P+RELA Q H
Sbjct: 109 HGRELLASAPTGSGKTLAFSIPILMQ-LKQPTN------KGFRALVISPTRELASQIH 159
>MGI|MGI:1925644 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1925644 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:CH466556 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AK080767 EMBL:AK133545 EMBL:AL645615 EMBL:BC029094
IPI:IPI00336965 RefSeq:NP_084372.2 UniGene:Mm.280544
ProteinModelPortal:Q8K301 SMR:Q8K301 STRING:Q8K301
PhosphoSite:Q8K301 PaxDb:Q8K301 PRIDE:Q8K301
Ensembl:ENSMUST00000049257 GeneID:78394 KEGG:mmu:78394
InParanoid:Q3UZY9 NextBio:348796 Bgee:Q8K301 CleanEx:MM_DDX52
Genevestigator:Q8K301 GermOnline:ENSMUSG00000020677 Uniprot:Q8K301
Length = 598
Score = 184 (69.8 bits), Expect = 4.9e-13, P = 4.9e-13
Identities = 47/118 (39%), Positives = 68/118 (57%)
Query: 124 DIIRRNLRILVEGDDVPPACCSFRLM----KLPESLVRALEAKGIKKPTPIQVQGIPAAL 179
+ R +I V+G D+P +F+ + K+ L++ + G + PTPIQ+Q IP L
Sbjct: 142 NFFRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQVPTPIQMQAIPVML 201
Query: 180 SGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
GR+++ A TGSGKTL F +PILM L+Q T +G L+I P+RELA Q H
Sbjct: 202 HGRELLASAPTGSGKTLAFSIPILMQ-LKQPTN------KGFRALVISPTRELASQIH 252
>UNIPROTKB|F1SLL4 [details] [associations]
symbol:LOC100626422 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 EMBL:CU929824
Ensembl:ENSSSCT00000018419 OMA:DEESIFA Uniprot:F1SLL4
Length = 232
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 43/109 (39%), Positives = 58/109 (53%)
Query: 132 ILVE--GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAF 189
ILVE G + PPA +F L ++L + G K TP+Q IP L GRD++ A
Sbjct: 115 ILVEVSGHEAPPAILTFEEANLCQTLNSNIAKAGYTKLTPVQKYSIPIILGGRDLMACAQ 174
Query: 190 TGSGKTLVFVLPILMFCLEQE-TKLPFLPGEGPYGLIICPSRELARQTH 237
TGSGKT F+LPIL + T F + P +I+ P+REL Q +
Sbjct: 175 TGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIY 223
>POMBASE|SPAC31A2.07c [details] [associations]
symbol:dbp10 "ATP-dependent RNA helicase Dbp10
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC31A2.07c
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 InterPro:IPR014014
PROSITE:PS51195 KO:K14808 HOGENOM:HOG000246455 OrthoDB:EOG4JWZP1
EMBL:AB027882 PIR:S59645 RefSeq:NP_592919.1
ProteinModelPortal:Q09719 STRING:Q09719 EnsemblFungi:SPAC31A2.07c.1
GeneID:2543197 KEGG:spo:SPAC31A2.07c OMA:FYIPYRP NextBio:20804220
Uniprot:Q09719
Length = 848
Score = 184 (69.8 bits), Expect = 8.4e-13, P = 8.4e-13
Identities = 42/97 (43%), Positives = 60/97 (61%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+F+ M L ++L+RA+ KG K PTPIQ + IP L GRD++G+A TGSGKT FV+P++
Sbjct: 70 NFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMI- 128
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241
E L LI+ P+RELA QT +++
Sbjct: 129 -----EHLKSTLANSNTRALILSPNRELALQTVKVVK 160
Score = 117 (46.2 bits), Expect = 0.00057, P = 0.00057
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD++G+A TGSGKT FV+P++ E L LI+ P+RELA QT +++
Sbjct: 107 RDVVGMARTGSGKTAAFVIPMI------EHLKSTLANSNTRALILSPNRELALQTVKVVK 160
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVI 95
+ LR+ +GGV + + ++
Sbjct: 161 DFSKGTD--LRSVAIVGGVSLEEQFSLL 186
>UNIPROTKB|P21507 [details] [associations]
symbol:srmB "SrmB, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0033592 "RNA strand annealing activity"
evidence=IDA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
EMBL:D64044 GO:GO:0030687 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0033592 EMBL:D13169
OMA:PLAMDQR HOGENOM:HOG000268807 PDB:2YJT PDBsum:2YJT EMBL:X14152
PIR:G65035 RefSeq:NP_417071.1 RefSeq:YP_490804.1
ProteinModelPortal:P21507 SMR:P21507 DIP:DIP-10920N IntAct:P21507
MINT:MINT-1225512 PRIDE:P21507 EnsemblBacteria:EBESCT00000003180
EnsemblBacteria:EBESCT00000015098 GeneID:12934372 GeneID:947055
KEGG:ecj:Y75_p2529 KEGG:eco:b2576 PATRIC:32120551 EchoBASE:EB0968
EcoGene:EG10975 KO:K05590 ProtClustDB:PRK11192
BioCyc:EcoCyc:EG10975-MONOMER BioCyc:ECOL316407:JW2560-MONOMER
Genevestigator:P21507 Uniprot:P21507
Length = 444
Score = 182 (69.1 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 42/94 (44%), Positives = 56/94 (59%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+F ++L ESL+ AL+ KG +PT IQ IP AL GRD++G A TG+GKT ++LP L
Sbjct: 5 TFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDVLGSAPTGTGKTAAYLLPALQ 64
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHD 238
L+ P P LI+ P+RELA Q D
Sbjct: 65 HLLD----FPRKKSGPPRILILTPTRELAMQVSD 94
>UNIPROTKB|B2C6E9 [details] [associations]
symbol:B2C6E9 "VASA" species:9337 "Trichosurus vulpecula"
[GO:0033391 "chromatoid body" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 EMBL:EU278597 Uniprot:B2C6E9
Length = 704
Score = 182 (69.1 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 45/107 (42%), Positives = 59/107 (55%)
Query: 132 ILVE--GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAF 189
ILVE G D PPA +F L ++L + G K TP+Q GIP L+GRD++ A
Sbjct: 252 ILVEVSGHDAPPAILTFEETDLCQTLNNDITKAGYTKLTPVQKYGIPIILAGRDLMACAQ 311
Query: 190 TGSGKTLVFVLPILMFCLEQE-TKLPFLPGEGPYGLIICPSRELARQ 235
TGSGKT F+LPIL + T F + P +I+ P+REL Q
Sbjct: 312 TGSGKTAAFLLPILAHMMRDGVTASRFKDQQEPECIIVAPTRELINQ 358
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 182 (69.1 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 45/119 (37%), Positives = 65/119 (54%)
Query: 120 DQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAAL 179
D+ DI+ + V G DVPPA +F L +SL + + G K TPIQ IP +
Sbjct: 267 DKYDDIV-----VEVSGSDVPPAILTFEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIV 321
Query: 180 SGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLP-FLPGEGPYGLIICPSRELARQTH 237
+GRD++ A TGSGKT F+LPIL + + + F + P +I+ P+REL Q +
Sbjct: 322 AGRDLMACAQTGSGKTAAFLLPILAHLMVKGVESSAFQTLKEPEAIIVAPTRELINQIY 380
>UNIPROTKB|H0Y960 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:18700 EMBL:AC016632 Ensembl:ENST00000503129
Uniprot:H0Y960
Length = 305
Score = 177 (67.4 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 44/109 (40%), Positives = 59/109 (54%)
Query: 132 ILVE--GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAF 189
ILVE G D PPA +F L ++L + G K TP+Q IP L+GRD++ A
Sbjct: 180 ILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQ 239
Query: 190 TGSGKTLVFVLPILMFCLEQE-TKLPFLPGEGPYGLIICPSRELARQTH 237
TGSGKT F+LPIL + T F + P +I+ P+REL Q +
Sbjct: 240 TGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIY 288
>UNIPROTKB|H0YI52 [details] [associations]
symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HGNC:HGNC:17347 EMBL:AC117498
Ensembl:ENST00000552802 Uniprot:H0YI52
Length = 152
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 32/74 (43%), Positives = 47/74 (63%)
Query: 132 ILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTG 191
I +G +P S++ LP ++ ++ G K+PTPIQ Q IP L RDIIG+A TG
Sbjct: 5 ITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDIIGVAETG 64
Query: 192 SGKTLVFVLPILMF 205
SGKT F++P+L++
Sbjct: 65 SGKTAAFLIPLLVW 78
>UNIPROTKB|Q90ZF6 [details] [associations]
symbol:olvas "VASA" species:8090 "Oryzias latipes"
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
Length = 617
Score = 180 (68.4 bits), Expect = 5.6e-12, P = 5.6e-12
Identities = 41/105 (39%), Positives = 57/105 (54%)
Query: 134 VEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSG 193
V G ++P A +F KL ESL + G KPTP+Q G+P +GRD++ A TGSG
Sbjct: 171 VSGTNLPAAIMTFEEAKLCESLENNISRSGYVKPTPVQKYGLPIISAGRDLMACAQTGSG 230
Query: 194 KTLVFVLPILMFCLEQETKLP-FLPGEGPYGLIICPSRELARQTH 237
KT F+LPIL + F + P +I+ P+REL Q +
Sbjct: 231 KTAAFLLPILQQLMADGVAASRFSEIQEPEAVIVAPTRELINQIY 275
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 178 (67.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 48/119 (40%), Positives = 66/119 (55%)
Query: 134 VEGDDVPPA--CCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTG 191
+E ++VP SF+ + + + L A + G K PT IQV+ IP AL GRDIIG+A TG
Sbjct: 13 LEAEEVPVVEEARSFKDLGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETG 72
Query: 192 SGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIG 250
SGKT F LPIL L+ +L + L++ P+RELA Q + Q+ IG
Sbjct: 73 SGKTGAFALPILQALLDAPQRL--------FALVLTPTRELAFQISE--QFEALGSSIG 121
Score = 132 (51.5 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 36/91 (39%), Positives = 52/91 (57%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RDIIG+A TGSGKT F LPIL L+ +L + L++ P+RELA Q + Q
Sbjct: 63 RDIIGLAETGSGKTGAFALPILQALLDAPQRL--------FALVLTPTRELAFQISE--Q 112
Query: 68 YYCAALPIPLRTCLAIGGVP-MNQSLDVIKK 97
+ I + + + +GG+ M+QSL + KK
Sbjct: 113 FEALGSSIGVHSAVIVGGIDSMSQSLALAKK 143
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 178 (67.7 bits), Expect = 7.0e-12, P = 7.0e-12
Identities = 39/104 (37%), Positives = 56/104 (53%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
F + L +++A+E G + PTPIQ IP AL GRD++GIA TG+GKT F LP++
Sbjct: 4 FSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63
Query: 206 CLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPI 249
+ P L++CP+RELA Q + Y L +
Sbjct: 64 LARGRARARM-----PRSLVLCPTRELAAQVAENFDTYTKHLKL 102
Score = 127 (49.8 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 32/92 (34%), Positives = 46/92 (50%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD++GIA TG+GKT F LP++ + P L++CP+RELA Q +
Sbjct: 40 RDVLGIAQTGTGKTASFTLPMITLLARGRARARM-----PRSLVLCPTRELAAQVAENFD 94
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGI 99
Y L L L IGGV + +I +G+
Sbjct: 95 TYTKHLK--LTKALLIGGVSFKEQDALIDRGV 124
>TAIR|locus:2116920 [details] [associations]
symbol:AT4G34910 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0006606
"protein import into nucleus" evidence=RCA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161586
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AL079347
KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT EMBL:BT002816
EMBL:BT004442 EMBL:AJ010467 IPI:IPI00520936 PIR:T10237 PIR:T51745
RefSeq:NP_195217.1 UniGene:At.24924 ProteinModelPortal:Q9SW44
SMR:Q9SW44 STRING:Q9SW44 PaxDb:Q9SW44 PRIDE:Q9SW44
EnsemblPlants:AT4G34910.1 GeneID:829643 KEGG:ath:AT4G34910
KEGG:dosa:Os03t0728800-01 GeneFarm:933 TAIR:At4g34910
InParanoid:Q9SW44 PhylomeDB:Q9SW44 ProtClustDB:CLSN2685920
Genevestigator:Q9SW44 GermOnline:AT4G34910 Uniprot:Q9SW44
Length = 626
Score = 179 (68.1 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 46/113 (40%), Positives = 62/113 (54%)
Query: 127 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIG 186
+RN R E A SF + L L+RAL KGI+KPT IQ IP L G+D++
Sbjct: 29 QRNDREQEEEQKEEEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVA 88
Query: 187 IAFTGSGKTLVFVLPIL--MFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
A TGSGKTL ++LP+L +F + +K P I+ PSREL +Q +
Sbjct: 89 RAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPS----AFILVPSRELCQQVY 137
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 179 (68.1 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 41/105 (39%), Positives = 57/105 (54%)
Query: 134 VEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSG 193
V G + P A +F L +SL + + G KPTP+Q GIP +GRD++ A TGSG
Sbjct: 267 VSGSNPPKAIMTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSG 326
Query: 194 KTLVFVLPILM-FCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
KT F+LPIL F + F + P +I+ P+REL Q +
Sbjct: 327 KTAAFLLPILQRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIY 371
>ASPGD|ASPL0000054300 [details] [associations]
symbol:AN0583 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012541
Pfam:PF00270 Pfam:PF00271 Pfam:PF08147 ProDom:PD024971
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:BN001308 EMBL:AACD01000007 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14808 RefSeq:XP_658187.1 ProteinModelPortal:Q5BFU7
STRING:Q5BFU7 EnsemblFungi:CADANIAT00002094 GeneID:2876361
KEGG:ani:AN0583.2 HOGENOM:HOG000246455 OMA:HLKVEMN
OrthoDB:EOG4JWZP1 Uniprot:Q5BFU7
Length = 936
Score = 180 (68.4 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 40/96 (41%), Positives = 58/96 (60%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
F+ M L +L++A+ KG PTPIQ + IP + +D++G+A TGSGKT FV+P++
Sbjct: 93 FQAMGLNANLLKAIARKGFSVPTPIQRKTIPVIMEDQDVVGMARTGSGKTAAFVIPMIEK 152
Query: 206 CLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241
TK G GLI+ PSRELA QT +++
Sbjct: 153 LKSHSTKF------GARGLILSPSRELALQTLKVVK 182
Score = 119 (46.9 bits), Expect = 0.00038, P = 0.00038
Identities = 30/88 (34%), Positives = 48/88 (54%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
+D++G+A TGSGKT FV+P++ TK G GLI+ PSRELA QT +++
Sbjct: 129 QDVVGMARTGSGKTAAFVIPMIEKLKSHSTKF------GARGLILSPSRELALQTLKVVK 182
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVI 95
L++ L +GG + + ++
Sbjct: 183 ELGKGTD--LKSVLLVGGDSLEEQFGMM 208
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 178 (67.7 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 43/112 (38%), Positives = 63/112 (56%)
Query: 129 NLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIA 188
++ I GD+VPP +F + L E+L ++ KPTP+Q IP +GRD++ A
Sbjct: 131 DIPIETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACA 190
Query: 189 FTGSGKTLVFVLPILMFCL-EQETKLPF-LPGEGPYGLIICPSRELARQTHD 238
TGSGKT F PI+ + +Q + P + G P +I+ P+RELA Q HD
Sbjct: 191 QTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHD 242
Score = 137 (53.3 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 44/149 (29%), Positives = 78/149 (52%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCL-EQETKLPF-LPGEGPYGLIICPSRELARQTHDI 65
RD++ A TGSGKT F PI+ + +Q + P + G P +I+ P+RELA Q HD
Sbjct: 184 RDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDE 243
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGI--------QYNDPI---KTSWRAPRC 114
+ + + ++ +A GG P+NQ + +++G+ + ND + + S + R
Sbjct: 244 ARKF--SYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRF 301
Query: 115 I-LSLPDQVHDI-IRRNLRILVEGDDVPP 141
+ L D++ D+ +R +V+ D+PP
Sbjct: 302 LALDEADRMLDMGFEPQIRKIVQQMDMPP 330
>UNIPROTKB|D6RCM4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HGNC:HGNC:18700 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RCM4 SMR:D6RCM4 Ensembl:ENST00000506511
ArrayExpress:D6RCM4 Bgee:D6RCM4 Uniprot:D6RCM4
Length = 518
Score = 177 (67.4 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 44/109 (40%), Positives = 59/109 (54%)
Query: 132 ILVE--GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAF 189
ILVE G D PPA +F L ++L + G K TP+Q IP L+GRD++ A
Sbjct: 254 ILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQ 313
Query: 190 TGSGKTLVFVLPILMFCLEQE-TKLPFLPGEGPYGLIICPSRELARQTH 237
TGSGKT F+LPIL + T F + P +I+ P+REL Q +
Sbjct: 314 TGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIY 362
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 178 (67.7 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 45/97 (46%), Positives = 56/97 (57%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+F + L L+RA E G KKPTPIQ IP AL+GRD+ A TGSGKT F LP L
Sbjct: 168 TFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLE 227
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241
L + ++ F LI+ P+RELA Q H +IQ
Sbjct: 228 RLLFRPKRV-FATRV----LILTPTRELAVQIHSMIQ 259
>UNIPROTKB|G3V0G3 [details] [associations]
symbol:DDX56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 56,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003676
EMBL:CH471128 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 EMBL:AC004938
UniGene:Hs.654762 HGNC:HGNC:18193 ProteinModelPortal:G3V0G3
SMR:G3V0G3 Ensembl:ENST00000421223 ArrayExpress:G3V0G3 Bgee:G3V0G3
Uniprot:G3V0G3
Length = 375
Score = 174 (66.3 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 40/103 (38%), Positives = 60/103 (58%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
F M L L++A+ G +PT IQ + IP AL G+D++ A TGSGKT + +P+L
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68
Query: 206 CLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY---YCA 245
L ++ P + + GL++ P++ELARQ +IQ YCA
Sbjct: 69 LLHRKATGPVVE-QAVRGLVLVPTKELARQAQSMIQQLATYCA 110
Score = 115 (45.5 bits), Expect = 0.00030, P = 0.00030
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
+D++ A TGSGKT + +P+L L ++ P + + GL++ P++ELARQ +IQ
Sbjct: 45 KDLLARARTGSGKTAAYAIPMLQLLLHRKATGPVVE-QAVRGLVLVPTKELARQAQSMIQ 103
Query: 68 Y---YCA 71
YCA
Sbjct: 104 QLATYCA 110
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 175 (66.7 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 40/98 (40%), Positives = 58/98 (59%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
F + L E+L++A+ KG + P+PIQ Q IPA +SGRD++ A TG+GKT F LP+L
Sbjct: 8 FTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQR 67
Query: 206 CLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243
+K + LI+ P+RELA Q + I+ Y
Sbjct: 68 L--SSSKGNKVSSNNVRALILTPTRELAAQISESIEVY 103
Score = 112 (44.5 bits), Expect = 0.00094, P = 0.00094
Identities = 30/94 (31%), Positives = 49/94 (52%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ RD++ A TG+GKT F LP+L +K + LI+ P+RELA Q +
Sbjct: 42 SGRDVMAAAQTGTGKTAGFTLPLLQRL--SSSKGNKVSSNNVRALILTPTRELAAQISES 99
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGI 99
I+ Y L L + + GGV +N + +++G+
Sbjct: 100 IEVYGKYLN--LHSMVVFGGVKINPQIARLRQGV 131
>UNIPROTKB|D4ADV9 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
Uniprot:D4ADV9
Length = 674
Score = 177 (67.4 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 44/109 (40%), Positives = 59/109 (54%)
Query: 132 ILVE--GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAF 189
ILVE G D PPA +F L ++L + G K TP+Q IP L+GRD++ A
Sbjct: 248 ILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQ 307
Query: 190 TGSGKTLVFVLPILMFCLEQE-TKLPFLPGEGPYGLIICPSRELARQTH 237
TGSGKT F+LPIL + T F + P +I+ P+REL Q +
Sbjct: 308 TGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIY 356
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 177 (67.4 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 44/109 (40%), Positives = 59/109 (54%)
Query: 132 ILVE--GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAF 189
ILVE G D PPA +F L ++L + G K TP+Q IP L+GRD++ A
Sbjct: 247 ILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQ 306
Query: 190 TGSGKTLVFVLPILMFCLEQE-TKLPFLPGEGPYGLIICPSRELARQTH 237
TGSGKT F+LPIL + T F + P +I+ P+REL Q +
Sbjct: 307 TGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIY 355
>UNIPROTKB|D6RDK4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:54514 KO:K13982 RefSeq:NP_001160005.1
UniGene:Hs.223581 GeneID:54514 KEGG:hsa:54514 HGNC:HGNC:18700
GenomeRNAi:54514 NextBio:56900 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RDK4 SMR:D6RDK4 PRIDE:D6RDK4
Ensembl:ENST00000514278 UCSC:uc010ivz.3 ArrayExpress:D6RDK4
Bgee:D6RDK4 Uniprot:D6RDK4
Length = 704
Score = 177 (67.4 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 44/109 (40%), Positives = 59/109 (54%)
Query: 132 ILVE--GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAF 189
ILVE G D PPA +F L ++L + G K TP+Q IP L+GRD++ A
Sbjct: 254 ILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQ 313
Query: 190 TGSGKTLVFVLPILMFCLEQE-TKLPFLPGEGPYGLIICPSRELARQTH 237
TGSGKT F+LPIL + T F + P +I+ P+REL Q +
Sbjct: 314 TGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIY 362
>RGD|1308793 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000237 "leptotene"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0007141 "male meiosis I" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA;ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0032880 "regulation of protein localization"
evidence=IEA;ISO] [GO:0033391 "chromatoid body" evidence=IEA;ISO]
[GO:0044464 "cell part" evidence=ISO] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA;ISO] [GO:0071546 "pi-body"
evidence=ISO;ISS] [GO:0071547 "piP-body" evidence=ISO;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 177 (67.4 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 44/109 (40%), Positives = 59/109 (54%)
Query: 132 ILVE--GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAF 189
ILVE G D PPA +F L ++L + G K TP+Q IP L+GRD++ A
Sbjct: 259 ILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQ 318
Query: 190 TGSGKTLVFVLPILMFCLEQE-TKLPFLPGEGPYGLIICPSRELARQTH 237
TGSGKT F+LPIL + T F + P +I+ P+REL Q +
Sbjct: 319 TGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIY 367
>UNIPROTKB|Q64060 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 177 (67.4 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 44/109 (40%), Positives = 59/109 (54%)
Query: 132 ILVE--GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAF 189
ILVE G D PPA +F L ++L + G K TP+Q IP L+GRD++ A
Sbjct: 259 ILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQ 318
Query: 190 TGSGKTLVFVLPILMFCLEQE-TKLPFLPGEGPYGLIICPSRELARQTH 237
TGSGKT F+LPIL + T F + P +I+ P+REL Q +
Sbjct: 319 TGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIY 367
>UNIPROTKB|Q6GWX0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 EMBL:AY626785 RefSeq:NP_001001910.1 UniGene:Ssc.42782
ProteinModelPortal:Q6GWX0 SMR:Q6GWX0 STRING:Q6GWX0 GeneID:431672
KEGG:ssc:431672 Uniprot:Q6GWX0
Length = 722
Score = 177 (67.4 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 44/109 (40%), Positives = 59/109 (54%)
Query: 132 ILVE--GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAF 189
ILVE G D PPA +F L ++L + G K TP+Q IP L+GRD++ A
Sbjct: 272 ILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQ 331
Query: 190 TGSGKTLVFVLPILMFCLEQE-TKLPFLPGEGPYGLIICPSRELARQTH 237
TGSGKT F+LPIL + T F + P +I+ P+REL Q +
Sbjct: 332 TGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIY 380
>UNIPROTKB|Q9NQI0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0032880 "regulation of protein
localization" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0071546 "pi-body" evidence=ISS] [GO:0071547 "piP-body"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 EMBL:CH471123 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 CTD:54514 KO:K13982
OrthoDB:EOG4W6NVF GO:GO:0071547 EMBL:AY004154 EMBL:AF262962
EMBL:AK292417 EMBL:BC047455 EMBL:BC088362 EMBL:AL137462
IPI:IPI00071483 IPI:IPI00456933 PIR:T46407 RefSeq:NP_001136021.1
RefSeq:NP_001160005.1 RefSeq:NP_077726.1 UniGene:Hs.223581
ProteinModelPortal:Q9NQI0 SMR:Q9NQI0 IntAct:Q9NQI0 STRING:Q9NQI0
PhosphoSite:Q9NQI0 DMDM:20138033 REPRODUCTION-2DPAGE:IPI00456933
PaxDb:Q9NQI0 PRIDE:Q9NQI0 Ensembl:ENST00000353507
Ensembl:ENST00000354991 Ensembl:ENST00000505374 GeneID:54514
KEGG:hsa:54514 UCSC:uc003jqg.4 UCSC:uc003jqh.4
GeneCards:GC05P055069 HGNC:HGNC:18700 HPA:CAB026170 HPA:HPA037763
HPA:HPA037764 MIM:605281 neXtProt:NX_Q9NQI0 PharmGKB:PA38646
InParanoid:Q9NQI0 OMA:RDAGESN PhylomeDB:Q9NQI0 GenomeRNAi:54514
NextBio:56900 ArrayExpress:Q9NQI0 Bgee:Q9NQI0 CleanEx:HS_DDX4
Genevestigator:Q9NQI0 GermOnline:ENSG00000152670 GO:GO:0000237
Uniprot:Q9NQI0
Length = 724
Score = 177 (67.4 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 44/109 (40%), Positives = 59/109 (54%)
Query: 132 ILVE--GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAF 189
ILVE G D PPA +F L ++L + G K TP+Q IP L+GRD++ A
Sbjct: 274 ILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQ 333
Query: 190 TGSGKTLVFVLPILMFCLEQE-TKLPFLPGEGPYGLIICPSRELARQTH 237
TGSGKT F+LPIL + T F + P +I+ P+REL Q +
Sbjct: 334 TGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIY 382
>UNIPROTKB|G3V6M5 [details] [associations]
symbol:Ddx56 "Protein Ddx56" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1303195
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:TFLMSAT GeneTree:ENSGT00550000074946 EMBL:CH473963
UniGene:Rn.39458 Ensembl:ENSRNOT00000006642 Uniprot:G3V6M5
Length = 546
Score = 175 (66.7 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 40/103 (38%), Positives = 60/103 (58%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
F M L L++A+ G +PT IQ + IP AL G+D++ A TGSGKT + +P+L
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68
Query: 206 CLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY---YCA 245
L ++ P + + GL++ P++ELARQ +IQ YCA
Sbjct: 69 LLHKKATGPVME-QAVRGLVLVPTKELARQAQSMIQQLASYCA 110
Score = 116 (45.9 bits), Expect = 0.00041, P = 0.00041
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
+D++ A TGSGKT + +P+L L ++ P + + GL++ P++ELARQ +IQ
Sbjct: 45 KDLLARARTGSGKTAAYAIPMLQLLLHKKATGPVME-QAVRGLVLVPTKELARQAQSMIQ 103
Query: 68 Y---YCA 71
YCA
Sbjct: 104 QLASYCA 110
>UNIPROTKB|Q4R5S7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9541 "Macaca fascicularis" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0071546 "pi-body" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AB169466
ProteinModelPortal:Q4R5S7 SMR:Q4R5S7 Uniprot:Q4R5S7
Length = 725
Score = 176 (67.0 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 44/109 (40%), Positives = 59/109 (54%)
Query: 132 ILVE--GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAF 189
ILVE G D PPA +F L ++L + G K TP+Q IP L+GRD++ A
Sbjct: 275 ILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQ 334
Query: 190 TGSGKTLVFVLPILMFCLEQE-TKLPFLPGEGPYGLIICPSRELARQTH 237
TGSGKT F+LPIL + T F + P +I+ P+REL Q +
Sbjct: 335 TGSGKTAAFLLPILAHMMHDGITASCFKELQEPECIIVAPTRELVNQIY 383
>UNIPROTKB|E2RMU5 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0033391 "chromatoid body" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0007283
GO:GO:0003676 GO:GO:0030317 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:RDAGESN GO:GO:0000237 EMBL:AAEX03001439
Ensembl:ENSCAFT00000011062 Uniprot:E2RMU5
Length = 728
Score = 176 (67.0 bits), Expect = 3.1e-11, P = 3.1e-11
Identities = 44/109 (40%), Positives = 59/109 (54%)
Query: 132 ILVE--GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAF 189
ILVE G D PPA +F L ++L + G K TP+Q IP L+GRD++ A
Sbjct: 275 ILVEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQ 334
Query: 190 TGSGKTLVFVLPILMFCLEQE-TKLPFLPGEGPYGLIICPSRELARQTH 237
TGSGKT F+LPIL + T F + P +I+ P+REL Q +
Sbjct: 335 TGSGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELINQIY 383
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 175 (66.7 bits), Expect = 3.7e-11, P = 3.7e-11
Identities = 44/116 (37%), Positives = 59/116 (50%)
Query: 129 NLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIA 188
N+ + V GD VP A F +++ + G KPTP+Q IP L+ RD++ A
Sbjct: 124 NIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCA 183
Query: 189 FTGSGKTLVFVLPILMFCLE---QETKLP-FLPGEGPY---GLIICPSRELARQTH 237
TGSGKT F+LPI+ L K P F G Y L++ P+RELA Q H
Sbjct: 184 QTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIH 239
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 173 (66.0 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 49/135 (36%), Positives = 73/135 (54%)
Query: 116 LSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGI 175
++ P++ HD + +VE ++ +F+ + + + L A + G KPT IQ++ I
Sbjct: 1 MAAPEE-HDSPTEASQPIVEEEETK----TFKDLGVTDVLCEACDQLGWTKPTKIQIEAI 55
Query: 176 PAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQ 235
P AL GRDIIG+A TGSGKT F LPIL LE +L + L++ P+RELA Q
Sbjct: 56 PLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRL--------FALVLTPTRELAFQ 107
Query: 236 THDIIQYYCAALPIG 250
+ Q+ IG
Sbjct: 108 ISE--QFEALGSSIG 120
Score = 134 (52.2 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 37/91 (40%), Positives = 53/91 (58%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RDIIG+A TGSGKT F LPIL LE +L + L++ P+RELA Q + Q
Sbjct: 62 RDIIGLAETGSGKTGAFALPILNALLETPQRL--------FALVLTPTRELAFQISE--Q 111
Query: 68 YYCAALPIPLRTCLAIGGVP-MNQSLDVIKK 97
+ I +++ + +GG+ M+QSL + KK
Sbjct: 112 FEALGSSIGVQSAVIVGGIDSMSQSLALAKK 142
>UNIPROTKB|Q9NY93 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 GO:GO:0003723 EMBL:CH236960 EMBL:CH471128
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
CleanEx:HS_DDX21 CTD:54606 HOVERGEN:HBG051334 OrthoDB:EOG47H5PT
EMBL:AJ131712 EMBL:AF247666 EMBL:AL136700 EMBL:AK022774
EMBL:AK315363 EMBL:CR457213 EMBL:AC004938 EMBL:BC001235
IPI:IPI00302281 IPI:IPI00925037 RefSeq:NP_001244118.1
RefSeq:NP_061955.1 UniGene:Hs.654762 ProteinModelPortal:Q9NY93
SMR:Q9NY93 IntAct:Q9NY93 STRING:Q9NY93 PhosphoSite:Q9NY93
DMDM:20139238 SWISS-2DPAGE:Q9NY93 PaxDb:Q9NY93 PRIDE:Q9NY93
DNASU:54606 Ensembl:ENST00000258772 Ensembl:ENST00000431640
GeneID:54606 KEGG:hsa:54606 UCSC:uc003tlg.3 GeneCards:GC07M044571
HGNC:HGNC:18193 HPA:HPA019749 MIM:608023 neXtProt:NX_Q9NY93
PharmGKB:PA134916346 InParanoid:Q9NY93 PhylomeDB:Q9NY93
GenomeRNAi:54606 NextBio:57133 ArrayExpress:Q9NY93 Bgee:Q9NY93
CleanEx:HS_DDX56 Genevestigator:Q9NY93 GermOnline:ENSG00000136271
Uniprot:Q9NY93
Length = 547
Score = 174 (66.3 bits), Expect = 4.0e-11, P = 4.0e-11
Identities = 40/103 (38%), Positives = 60/103 (58%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
F M L L++A+ G +PT IQ + IP AL G+D++ A TGSGKT + +P+L
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQL 68
Query: 206 CLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY---YCA 245
L ++ P + + GL++ P++ELARQ +IQ YCA
Sbjct: 69 LLHRKATGPVVE-QAVRGLVLVPTKELARQAQSMIQQLATYCA 110
Score = 115 (45.5 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
+D++ A TGSGKT + +P+L L ++ P + + GL++ P++ELARQ +IQ
Sbjct: 45 KDLLARARTGSGKTAAYAIPMLQLLLHRKATGPVVE-QAVRGLVLVPTKELARQAQSMIQ 103
Query: 68 Y---YCA 71
YCA
Sbjct: 104 QLATYCA 110
Score = 38 (18.4 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 193 GKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICP 228
G L FVLP F L + +L L GE G I+ P
Sbjct: 383 GIVLTFVLPTEQFHLGKIEEL--LSGENR-GPILLP 415
>ZFIN|ZDB-GENE-071022-2 [details] [associations]
symbol:ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
10" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-071022-2 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 EMBL:CR450711 IPI:IPI00898518
Ensembl:ENSDART00000125785 ArrayExpress:F1QMM9 Bgee:F1QMM9
Uniprot:F1QMM9
Length = 875
Score = 176 (67.0 bits), Expect = 4.1e-11, P = 4.1e-11
Identities = 46/120 (38%), Positives = 71/120 (59%)
Query: 124 DIIRRNLRILVEG-DDV-PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSG 181
++ R N++ LV+ ++ P F L + ++ L ++PT IQ Q I AL G
Sbjct: 48 EVERENIKKLVDKYSEINPKEAVKFSDFPLSKKTLKGLLEAQYRQPTEIQRQTIGFALQG 107
Query: 182 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241
RD++G A TGSGKTL F++P+L CL +E + + G G LII P+RELA QT ++++
Sbjct: 108 RDVLGAAKTGSGKTLAFLIPVLE-CLYRE-QWTAMDGLG--ALIISPTRELAYQTFEVLR 163
Score = 124 (48.7 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 29/60 (48%), Positives = 42/60 (70%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD++G A TGSGKTL F++P+L CL +E + + G G LII P+RELA QT ++++
Sbjct: 108 RDVLGAAKTGSGKTLAFLIPVLE-CLYRE-QWTAMDGLG--ALIISPTRELAYQTFEVLR 163
>RGD|1311124 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
Length = 480
Score = 173 (66.0 bits), Expect = 4.3e-11, P = 4.3e-11
Identities = 47/108 (43%), Positives = 60/108 (55%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
F ++L LV G+K+PTP+Q+ IPA L GRD +G A TGSGKT FVLPIL
Sbjct: 4 FAELRLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQ- 62
Query: 206 CLEQETKLPFLPGEGPYG---LIICPSRELARQTHDIIQYYCAALPIG 250
KL E PYG L++ P+RELA Q + Q+ P+G
Sbjct: 63 ------KL----SEDPYGIFCLVLTPTRELAYQIAE--QFRVLGKPLG 98
Score = 139 (54.0 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 39/94 (41%), Positives = 54/94 (57%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG---LIICPSRELARQTHD 64
RD +G A TGSGKT FVLPIL KL E PYG L++ P+RELA Q +
Sbjct: 40 RDCLGCAKTGSGKTAAFVLPILQ-------KL----SEDPYGIFCLVLTPTRELAYQIAE 88
Query: 65 IIQYYCAALPIPLRTCLAIGGVPM-NQSLDVIKK 97
Q+ P+ L+ C+ +GG+ M Q+L++ +K
Sbjct: 89 --QFRVLGKPLGLKDCIIVGGMDMVTQALELSRK 120
>UNIPROTKB|Q3SZ40 [details] [associations]
symbol:DDX56 "Probable ATP-dependent RNA helicase DDX56"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 HSSP:P60842 EMBL:BC103169
IPI:IPI00695179 RefSeq:NP_001029501.1 UniGene:Bt.48952
ProteinModelPortal:Q3SZ40 STRING:Q3SZ40 PRIDE:Q3SZ40
Ensembl:ENSBTAT00000014014 GeneID:508728 KEGG:bta:508728 CTD:54606
HOVERGEN:HBG051334 InParanoid:Q3SZ40 OrthoDB:EOG47H5PT
NextBio:20868656 Uniprot:Q3SZ40
Length = 546
Score = 173 (66.0 bits), Expect = 5.4e-11, P = 5.4e-11
Identities = 40/108 (37%), Positives = 60/108 (55%)
Query: 141 PACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVL 200
P F M L L++A+ G +PT IQ + IP AL G+D++ A TGSGKT + +
Sbjct: 4 PESLGFEHMGLDHRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAI 63
Query: 201 PILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY---YCA 245
P+L L ++ P + + L++ P++ELARQ +IQ YCA
Sbjct: 64 PMLQLLLHRKATGPVVE-QAVRALVLVPTKELARQAQSMIQQLAAYCA 110
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 171 (65.3 bits), Expect = 5.6e-11, P = 5.6e-11
Identities = 42/103 (40%), Positives = 59/103 (57%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPIL-M 204
F+ L ES++ + KG K+PTPIQ + IPA ++G D++GIA TG+GKT F LPI+
Sbjct: 4 FKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINK 63
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
F K+ + + LI+ P+RELA Q I Y L
Sbjct: 64 F---GRNKID-IKAKSTRSLILTPTRELASQIMQNIDDYSDGL 102
Score = 117 (46.2 bits), Expect = 0.00020, P = 0.00020
Identities = 35/95 (36%), Positives = 49/95 (51%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPIL-MFCLEQETKLPFLPGEGPYGLIICPSRELARQTHD 64
N D++GIA TG+GKT F LPI+ F K+ + + LI+ P+RELA Q
Sbjct: 38 NGNDLLGIAQTGTGKTAAFSLPIINKF---GRNKID-IKAKSTRSLILTPTRELASQIMQ 93
Query: 65 IIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGI 99
I Y L L+T + GGV +D I+ G+
Sbjct: 94 NIDDYSDGLG--LKTKVVYGGVGRQAQVDSIELGL 126
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 173 (66.0 bits), Expect = 7.0e-11, P = 7.0e-11
Identities = 44/114 (38%), Positives = 61/114 (53%)
Query: 129 NLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIA 188
++ I GD+VPP +F + L E+L + KPTP+Q IP L GRD++ A
Sbjct: 144 DIPIETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACA 203
Query: 189 FTGSGKTLVFVLPILMFCL-EQETKLPFLPGEG---PYGLIICPSRELARQTHD 238
TGSGKT F PI+ + +Q + P G P +I+ P+RELA Q HD
Sbjct: 204 QTGSGKTAAFCFPIISGIMKDQHVQRP--RGSRTVYPLAVILSPTRELASQIHD 255
Score = 135 (52.6 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 46/151 (30%), Positives = 77/151 (50%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCL-EQETKLPFLPGEG---PYGLIICPSRELARQTH 63
RD++ A TGSGKT F PI+ + +Q + P G P +I+ P+RELA Q H
Sbjct: 197 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRP--RGSRTVYPLAVILSPTRELASQIH 254
Query: 64 DIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGI--------QYNDPI---KTSWRAP 112
D + + + ++ +A GG P+NQ L +++G+ + ND + + S +
Sbjct: 255 DEAKKF--SYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMI 312
Query: 113 RCI-LSLPDQVHDI-IRRNLRILVEGDDVPP 141
R + L D++ D+ +R +VE D+PP
Sbjct: 313 RFLALDEADRMLDMGFEPQIRKIVEQMDMPP 343
>UNIPROTKB|F1N0P2 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:DAAA02019036 IPI:IPI00709252
UniGene:Bt.61505 Ensembl:ENSBTAT00000056136 OMA:PLEPKEY
Uniprot:F1N0P2
Length = 392
Score = 170 (64.9 bits), Expect = 7.2e-11, P = 7.2e-11
Identities = 47/108 (43%), Positives = 59/108 (54%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
F + L LV G+K+PTP+Q+ IPA L GRD +G A TGSGKT FVLPIL
Sbjct: 4 FAELGLSSWLVEQCRQMGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQ- 62
Query: 206 CLEQETKLPFLPGEGPYG---LIICPSRELARQTHDIIQYYCAALPIG 250
KL E PYG L++ P+RELA Q + Q+ P+G
Sbjct: 63 ------KL----SEDPYGIFCLVLTPTRELAYQIAE--QFRVLGKPLG 98
Score = 139 (54.0 bits), Expect = 5.3e-07, P = 5.3e-07
Identities = 43/120 (35%), Positives = 62/120 (51%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG---LIICPSRELARQTHD 64
RD +G A TGSGKT FVLPIL KL E PYG L++ P+RELA Q +
Sbjct: 40 RDCLGCAKTGSGKTAAFVLPILQ-------KL----SEDPYGIFCLVLTPTRELAYQIAE 88
Query: 65 IIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHD 124
Q+ P+ L+ C+ +GG+ NQ + P++T + + L +P++V D
Sbjct: 89 --QFRVLGKPLGLKDCIIVGGLATNQPFFW-----EAQAPVRTVEQLDQRYLLVPEKVKD 141
>MGI|MGI:1914192 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914192
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AK075864 EMBL:AK019845 EMBL:BC028246
EMBL:BC103776 IPI:IPI00459381 RefSeq:NP_080136.2 UniGene:Mm.44219
ProteinModelPortal:Q8K363 SMR:Q8K363 STRING:Q8K363
PhosphoSite:Q8K363 PaxDb:Q8K363 PRIDE:Q8K363
Ensembl:ENSMUST00000001724 GeneID:66942 KEGG:mmu:66942
InParanoid:Q8K363 NextBio:323084 Bgee:Q8K363 CleanEx:MM_DDX18
Genevestigator:Q8K363 GermOnline:ENSMUSG00000001674 Uniprot:Q8K363
Length = 660
Score = 173 (66.0 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 38/89 (42%), Positives = 56/89 (62%)
Query: 153 ESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETK 212
E+ ++A+E G K+ T IQ + I L GRD++ A TGSGKTL F++P++ E K
Sbjct: 178 ENTLKAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVI----ELIVK 233
Query: 213 LPFLPGEGPYGLIICPSRELARQTHDIIQ 241
L F+P G LI+ P+RELA QT +++
Sbjct: 234 LKFMPRNGTGVLILSPTRELAMQTFGVLK 262
Score = 124 (48.7 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD++ A TGSGKTL F++P++ E KL F+P G LI+ P+RELA QT +++
Sbjct: 207 RDLLAAAKTGSGKTLAFLIPVI----ELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLK 262
>UNIPROTKB|F8VRX4 [details] [associations]
symbol:DDX54 "ATP-dependent RNA helicase DDX54"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC089999 HGNC:HGNC:20084 ChiTaRS:DDX54 IPI:IPI01022245
ProteinModelPortal:F8VRX4 SMR:F8VRX4 Ensembl:ENST00000552375
ArrayExpress:F8VRX4 Bgee:F8VRX4 Uniprot:F8VRX4
Length = 208
Score = 152 (58.6 bits), Expect = 7.8e-11, P = 7.8e-11
Identities = 39/91 (42%), Positives = 51/91 (56%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
F+ M L + + + KG K PTPIQ + IP L G+D++ +A TGSGKT F+LP MF
Sbjct: 15 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLP--MF 72
Query: 206 CLEQETKLPFLPGEGPYGLIICPSRELARQT 236
E G LI+ P+RELA QT
Sbjct: 73 ----ERLKTHSAQTGARALILSPTRELALQT 99
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 173 (66.0 bits), Expect = 9.6e-11, P = 9.6e-11
Identities = 42/114 (36%), Positives = 70/114 (61%)
Query: 128 RNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGI 187
R L+ +VE +++P +F + L L++A++ G +PTPIQ + IP AL+G+DI+
Sbjct: 179 RKLKKIVE-EELP----TFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILAS 233
Query: 188 AFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241
A TGSGKT F+LP+L L ++++ + LI+ P+RELA Q +++
Sbjct: 234 ASTGSGKTAAFLLPVLERLLFRDSEYRAIRV-----LILLPTRELALQCQSVME 282
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 170 (64.9 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 44/106 (41%), Positives = 60/106 (56%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+F+ + + + L A + G KPT IQ++ IP AL GRDIIG+A TGSGKT F LPIL
Sbjct: 25 TFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIG 250
LE +L + L++ P+RELA Q + Q+ IG
Sbjct: 85 ALLETPQRL--------FALVLTPTRELAFQISE--QFEALGSSIG 120
Score = 132 (51.5 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 37/91 (40%), Positives = 52/91 (57%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RDIIG+A TGSGKT F LPIL LE +L + L++ P+RELA Q + Q
Sbjct: 62 RDIIGLAETGSGKTGAFALPILNALLETPQRL--------FALVLTPTRELAFQISE--Q 111
Query: 68 YYCAALPIPLRTCLAIGGVP-MNQSLDVIKK 97
+ I ++ + +GG+ M+QSL + KK
Sbjct: 112 FEALGSSIGVQCAVIVGGIDSMSQSLALAKK 142
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 170 (64.9 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 44/106 (41%), Positives = 60/106 (56%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+F+ + + + L A + G KPT IQ++ IP AL GRDIIG+A TGSGKT F LPIL
Sbjct: 25 TFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 84
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIG 250
LE +L + L++ P+RELA Q + Q+ IG
Sbjct: 85 ALLETPQRL--------FALVLTPTRELAFQISE--QFEALGSSIG 120
Score = 132 (51.5 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 37/91 (40%), Positives = 52/91 (57%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RDIIG+A TGSGKT F LPIL LE +L + L++ P+RELA Q + Q
Sbjct: 62 RDIIGLAETGSGKTGAFALPILNALLETPQRL--------FALVLTPTRELAFQISE--Q 111
Query: 68 YYCAALPIPLRTCLAIGGVP-MNQSLDVIKK 97
+ I ++ + +GG+ M+QSL + KK
Sbjct: 112 FEALGSSIGVQCAVIVGGIDSMSQSLALAKK 142
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 170 (64.9 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 44/106 (41%), Positives = 60/106 (56%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+F+ + + + L A + G KPT IQ++ IP AL GRDIIG+A TGSGKT F LPIL
Sbjct: 24 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 83
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIG 250
LE +L + L++ P+RELA Q + Q+ IG
Sbjct: 84 ALLETPQRL--------FALVLTPTRELAFQISE--QFEALGSSIG 119
Score = 132 (51.5 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 37/91 (40%), Positives = 52/91 (57%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RDIIG+A TGSGKT F LPIL LE +L + L++ P+RELA Q + Q
Sbjct: 61 RDIIGLAETGSGKTGAFALPILNALLETPQRL--------FALVLTPTRELAFQISE--Q 110
Query: 68 YYCAALPIPLRTCLAIGGVP-MNQSLDVIKK 97
+ I ++ + +GG+ M+QSL + KK
Sbjct: 111 FEALGSSIGVQCAVIVGGIDSMSQSLALAKK 141
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 170 (64.9 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 44/106 (41%), Positives = 60/106 (56%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+F+ + + + L A + G KPT IQ++ IP AL GRDIIG+A TGSGKT F LPIL
Sbjct: 27 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 86
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIG 250
LE +L + L++ P+RELA Q + Q+ IG
Sbjct: 87 ALLETPQRL--------FALVLTPTRELAFQISE--QFEALGSSIG 122
Score = 132 (51.5 bits), Expect = 4.6e-06, P = 4.6e-06
Identities = 37/91 (40%), Positives = 52/91 (57%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RDIIG+A TGSGKT F LPIL LE +L + L++ P+RELA Q + Q
Sbjct: 64 RDIIGLAETGSGKTGAFALPILNALLETPQRL--------FALVLTPTRELAFQISE--Q 113
Query: 68 YYCAALPIPLRTCLAIGGVP-MNQSLDVIKK 97
+ I ++ + +GG+ M+QSL + KK
Sbjct: 114 FEALGSSIGVQCAVIVGGIDSMSQSLALAKK 144
>MGI|MGI:1277172 [details] [associations]
symbol:Ddx56 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 56"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1277172 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14810 HOGENOM:HOG000253015 OMA:TFLMSAT
GeneTree:ENSGT00550000074946 CTD:54606 HOVERGEN:HBG051334
OrthoDB:EOG47H5PT EMBL:AK011136 EMBL:AK077514 EMBL:BC018291
IPI:IPI00132957 RefSeq:NP_080814.1 UniGene:Mm.29810
ProteinModelPortal:Q9D0R4 SMR:Q9D0R4 STRING:Q9D0R4
PhosphoSite:Q9D0R4 PaxDb:Q9D0R4 PRIDE:Q9D0R4
Ensembl:ENSMUST00000004507 GeneID:52513 KEGG:mmu:52513
InParanoid:Q9D0R4 ChiTaRS:DDX56 NextBio:309069 Bgee:Q9D0R4
CleanEx:MM_DDX56 Genevestigator:Q9D0R4
GermOnline:ENSMUSG00000004393 Uniprot:Q9D0R4
Length = 546
Score = 171 (65.3 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 40/103 (38%), Positives = 60/103 (58%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
F M L L++A+ G +PT IQ + IP AL G+D++ A TGSGKT + +P+L
Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQS 68
Query: 206 CLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY---YCA 245
L ++ P + + GL++ P++ELARQ +IQ YCA
Sbjct: 69 LLHKKATGPVME-QAVRGLVLVPTKELARQAQAMIQQLAAYCA 110
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 170 (64.9 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 44/106 (41%), Positives = 60/106 (56%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+F+ + + + L A + G KPT IQ++ IP AL GRDIIG+A TGSGKT F LPIL
Sbjct: 51 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 110
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIG 250
LE +L + L++ P+RELA Q + Q+ IG
Sbjct: 111 ALLETPQRL--------FALVLTPTRELAFQISE--QFEALGSSIG 146
Score = 134 (52.2 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 37/91 (40%), Positives = 53/91 (58%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RDIIG+A TGSGKT F LPIL LE +L + L++ P+RELA Q + Q
Sbjct: 88 RDIIGLAETGSGKTGAFALPILNALLETPQRL--------FALVLTPTRELAFQISE--Q 137
Query: 68 YYCAALPIPLRTCLAIGGVP-MNQSLDVIKK 97
+ I +++ + +GG+ M+QSL + KK
Sbjct: 138 FEALGSSIGVQSAVIVGGIDSMSQSLALAKK 168
>SGD|S000004266 [details] [associations]
symbol:DBP9 "DEAD-box protein required for 27S rRNA
processing" species:4932 "Saccharomyces cerevisiae" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000463 "maturation
of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IDA] [GO:0033680 "ATP-dependent DNA/RNA helicase
activity" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000004266 GO:GO:0005524
GO:GO:0005730 EMBL:BK006945 GO:GO:0003723 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000463
GO:GO:0004004 GO:GO:0033680 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:U17245 KO:K14810 HOGENOM:HOG000253015
OMA:TFLMSAT OrthoDB:EOG4DFSWQ EMBL:AY723847 PIR:S51412
RefSeq:NP_013378.1 ProteinModelPortal:Q06218 SMR:Q06218
DIP:DIP-4771N IntAct:Q06218 MINT:MINT-487200 STRING:Q06218
PaxDb:Q06218 PeptideAtlas:Q06218 EnsemblFungi:YLR276C GeneID:850982
KEGG:sce:YLR276C CYGD:YLR276c GeneTree:ENSGT00550000074946
NextBio:967498 Genevestigator:Q06218 GermOnline:YLR276C
Uniprot:Q06218
Length = 594
Score = 171 (65.3 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 42/116 (36%), Positives = 67/116 (57%)
Query: 134 VEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSG-RDIIGIAFTGS 192
VEG + + +F L L++A++ G + PT IQ IP AL RDII A TGS
Sbjct: 8 VEGAYIDDST-TFEAFHLDSRLLQAIKNIGFQYPTLIQSHAIPLALQQKRDIIAKAATGS 66
Query: 193 GKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ---YYCA 245
GKTL +++P++ LE + + G G+I+ P+RELA+Q +++++ YC+
Sbjct: 67 GKTLAYLIPVIETILEYKKTIDNGEENGTLGIILVPTRELAQQVYNVLEKLVLYCS 122
Score = 127 (49.8 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 26/70 (37%), Positives = 44/70 (62%)
Query: 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHD 64
+ RDII A TGSGKTL +++P++ LE + + G G+I+ P+RELA+Q ++
Sbjct: 53 QQKRDIIAKAATGSGKTLAYLIPVIETILEYKKTIDNGEENGTLGIILVPTRELAQQVYN 112
Query: 65 IIQ---YYCA 71
+++ YC+
Sbjct: 113 VLEKLVLYCS 122
>WB|WBGene00013214 [details] [associations]
symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
Uniprot:Q9XVZ6
Length = 504
Score = 170 (64.9 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 42/109 (38%), Positives = 61/109 (55%)
Query: 139 VPPACCSF-RLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLV 197
+PP SF + S++ + G +KP+PIQ Q P LSG+D IG++ TGSGKTL
Sbjct: 78 IPPPVNSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLA 137
Query: 198 FVLPILMFC---LEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243
F+LP L+ L Q K P+ L++ P+RELA+Q ++ Y
Sbjct: 138 FLLPALLHIDAQLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEVKKY 186
Score = 116 (45.9 bits), Expect = 0.00037, P = 0.00037
Identities = 48/184 (26%), Positives = 86/184 (46%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFC---LEQETKLPFLPGEGPYGLIICPSRELARQT 62
+ +D IG++ TGSGKTL F+LP L+ L Q K P+ L++ P+RELA+Q
Sbjct: 120 SGQDCIGVSQTGSGKTLAFLLPALLHIDAQLAQYEKNDEEQKPSPFVLVLSPTRELAQQI 179
Query: 63 HDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQY--NDPIKTSWRAPRCILSLPD 120
++ Y + CL GG + ++ + G++ P + + + ++SL
Sbjct: 180 EGEVKKY--SYNGYKSVCL-YGGGSRPEQVEACRGGVEIVIATPGRLTDLSNDGVISLAS 236
Query: 121 QVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEA---KGIKKPTPIQVQGIPA 177
+ ++ R+L G +V F + P+ LV A +G++K T +
Sbjct: 237 VTYVVLDEADRMLDMGFEVAIRRILFEIR--PDRLVALTSATWPEGVRKLTDKYTKEAVM 294
Query: 178 ALSG 181
A++G
Sbjct: 295 AVNG 298
>UNIPROTKB|F1NQV5 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AADN02019007 IPI:IPI00579774
Ensembl:ENSGALT00000039062 ArrayExpress:F1NQV5 Uniprot:F1NQV5
Length = 758
Score = 172 (65.6 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 40/97 (41%), Positives = 56/97 (57%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
SF+ M L L++A+ A G K+PTPIQ IP L G+DI A TG+GKT F+LP+L
Sbjct: 181 SFQDMNLSRPLLKAITALGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFILPVL- 239
Query: 205 FCLEQETKLPFLPGEGPYG--LIICPSRELARQTHDI 239
+L + P + P L++ P+REL Q H +
Sbjct: 240 ------ERLIYKPRQAPITRVLVLVPTRELGIQVHSV 270
Score = 116 (45.9 bits), Expect = 0.00064, P = 0.00064
Identities = 29/93 (31%), Positives = 47/93 (50%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG--LIICPSRELARQTHDI 65
+DI A TG+GKT F+LP+L +L + P + P L++ P+REL Q H +
Sbjct: 218 KDICACAATGTGKTAAFILPVL-------ERLIYKPRQAPITRVLVLVPTRELGIQVHSV 270
Query: 66 IQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKG 98
+ + TCLA+GG+ + ++ G
Sbjct: 271 TKQLAQFSSVT--TCLAVGGLDVKTQEAALRSG 301
>TAIR|locus:2173517 [details] [associations]
symbol:AT5G60990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0003723 EMBL:AB008269 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
EMBL:AK117799 EMBL:BT005375 EMBL:AY088068 EMBL:AJ010462
IPI:IPI00518446 PIR:T51342 RefSeq:NP_568931.1 UniGene:At.20430
ProteinModelPortal:Q8GY84 SMR:Q8GY84 STRING:Q8GY84 PaxDb:Q8GY84
PRIDE:Q8GY84 EnsemblPlants:AT5G60990.1 GeneID:836220
KEGG:ath:AT5G60990 GeneFarm:923 TAIR:At5g60990 InParanoid:Q8GY84
PhylomeDB:Q8GY84 ProtClustDB:CLSN2690059 Genevestigator:Q8GY84
GermOnline:AT5G60990 Uniprot:Q8GY84
Length = 456
Score = 169 (64.5 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 40/95 (42%), Positives = 55/95 (57%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+F + + E LV+A E G K P+ IQ + +P AL G+D+IG+A TGSGKT F +PIL
Sbjct: 10 TFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQ 69
Query: 205 FCLE----QETKLPFLPGEGPYGLIICPSRELARQ 235
LE E K P + ++ P+RELA Q
Sbjct: 70 ALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQ 104
Score = 125 (49.1 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 34/95 (35%), Positives = 51/95 (53%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLE----QETKLPFLPGEGPYGLIICPSRELARQTH 63
+D+IG+A TGSGKT F +PIL LE E K P + ++ P+RELA Q
Sbjct: 47 KDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIA 106
Query: 64 DIIQYYCAALPIPLRTCLAIGGVP-MNQSLDVIKK 97
+ Q+ I LR + +GG+ M Q++ + K+
Sbjct: 107 E--QFEALGADISLRCAVLVGGIDRMQQTIALGKR 139
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 169 (64.5 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 39/104 (37%), Positives = 59/104 (56%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
F + L +LV+A+ G + PTPIQ Q IP+ L+G++++ A TG+GKT FVLP+L
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL-- 60
Query: 206 CLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPI 249
+ P + + +I+ P+RELA Q I Y LP+
Sbjct: 61 --HRFADAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPL 102
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 169 (64.5 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 39/104 (37%), Positives = 59/104 (56%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
F + L +LV+A+ G + PTPIQ Q IP+ L+G++++ A TG+GKT FVLP+L
Sbjct: 3 FSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLL-- 60
Query: 206 CLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPI 249
+ P + + +I+ P+RELA Q I Y LP+
Sbjct: 61 --HRFADAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPL 102
>DICTYBASE|DDB_G0292992 [details] [associations]
symbol:helA "putative RNA helicase" species:44689
"Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0292992 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000199 KO:K14808 HSSP:P10081 EMBL:X81822
RefSeq:XP_629281.1 ProteinModelPortal:Q54CD8 STRING:Q54CD8
EnsemblProtists:DDB0215372 GeneID:8629004 KEGG:ddi:DDB_G0292992
OMA:RLPKDGH ProtClustDB:CLSZ2429315 Uniprot:Q54CD8
Length = 1091
Score = 173 (66.0 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 39/96 (40%), Positives = 59/96 (61%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
F+ M L ++L++A+ KG PTPIQ + IP L G DI+G+A TGSGKT FV+P++
Sbjct: 232 FQSMDLTKNLLKAILKKGFNVPTPIQRKSIPMILDGHDIVGMARTGSGKTGAFVIPMIQK 291
Query: 206 CLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241
+ T + G +I+ P+RELA QT +++
Sbjct: 292 LGDHSTTV------GVRAVILSPTRELAIQTFKVVK 321
Score = 116 (45.9 bits), Expect = 0.00099, P = 0.00099
Identities = 32/92 (34%), Positives = 51/92 (55%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
+ DI+G+A TGSGKT FV+P++ + T + G +I+ P+RELA QT +
Sbjct: 266 DGHDIVGMARTGSGKTGAFVIPMIQKLGDHSTTV------GVRAVILSPTRELAIQTFKV 319
Query: 66 IQYYCAALPIPLRTCLAIGGVPM-NQSLDVIK 96
++ + LRT L +GG M +Q D+ +
Sbjct: 320 VKDFSQGTQ--LRTILIVGGDSMEDQFTDLAR 349
>UNIPROTKB|Q9Y6V7 [details] [associations]
symbol:DDX49 "Probable ATP-dependent RNA helicase DDX49"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC002985 KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
HOVERGEN:HBG100512 EMBL:AK223294 EMBL:BC002674 IPI:IPI00003739
RefSeq:NP_061943.2 UniGene:Hs.143187 ProteinModelPortal:Q9Y6V7
SMR:Q9Y6V7 IntAct:Q9Y6V7 STRING:Q9Y6V7 PhosphoSite:Q9Y6V7
DMDM:74753527 PaxDb:Q9Y6V7 PRIDE:Q9Y6V7 DNASU:54555
Ensembl:ENST00000247003 GeneID:54555 KEGG:hsa:54555 UCSC:uc002nkq.2
CTD:54555 GeneCards:GC19P019030 HGNC:HGNC:18684 neXtProt:NX_Q9Y6V7
PharmGKB:PA134956171 InParanoid:Q9Y6V7 OrthoDB:EOG4C87SC
PhylomeDB:Q9Y6V7 GenomeRNAi:54555 NextBio:57032 ArrayExpress:Q9Y6V7
Bgee:Q9Y6V7 CleanEx:HS_DDX49 Genevestigator:Q9Y6V7
GermOnline:ENSG00000105671 Uniprot:Q9Y6V7
Length = 483
Score = 169 (64.5 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 47/108 (43%), Positives = 59/108 (54%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
F + L LV G+K+PTP+Q+ IPA L GRD +G A TGSGKT FVLPIL
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQ- 62
Query: 206 CLEQETKLPFLPGEGPYG---LIICPSRELARQTHDIIQYYCAALPIG 250
KL E PYG L++ P+RELA Q + Q+ P+G
Sbjct: 63 ------KL----SEDPYGIFCLVLTPTRELAYQIAE--QFRVLGKPLG 98
Score = 137 (53.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 39/94 (41%), Positives = 54/94 (57%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG---LIICPSRELARQTHD 64
RD +G A TGSGKT FVLPIL KL E PYG L++ P+RELA Q +
Sbjct: 40 RDCLGCAKTGSGKTAAFVLPILQ-------KL----SEDPYGIFCLVLTPTRELAYQIAE 88
Query: 65 IIQYYCAALPIPLRTCLAIGGVPM-NQSLDVIKK 97
Q+ P+ L+ C+ +GG+ M Q+L++ +K
Sbjct: 89 --QFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 169 (64.5 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 47/108 (43%), Positives = 59/108 (54%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
F + L LV G+K+PTP+Q+ IPA L GRD +G A TGSGKT FVLPIL
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQ- 62
Query: 206 CLEQETKLPFLPGEGPYG---LIICPSRELARQTHDIIQYYCAALPIG 250
KL E PYG L++ P+RELA Q + Q+ P+G
Sbjct: 63 ------KL----SEDPYGIFCLVLTPTRELAYQIAE--QFRVLGKPLG 98
Score = 137 (53.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 39/94 (41%), Positives = 54/94 (57%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG---LIICPSRELARQTHD 64
RD +G A TGSGKT FVLPIL KL E PYG L++ P+RELA Q +
Sbjct: 40 RDCLGCAKTGSGKTAAFVLPILQ-------KL----SEDPYGIFCLVLTPTRELAYQIAE 88
Query: 65 IIQYYCAALPIPLRTCLAIGGVPM-NQSLDVIKK 97
Q+ P+ L+ C+ +GG+ M Q+L++ +K
Sbjct: 89 --QFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120
>UNIPROTKB|E2RBM7 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
NextBio:20858886 Uniprot:E2RBM7
Length = 488
Score = 169 (64.5 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 47/108 (43%), Positives = 59/108 (54%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
F + L LV G+K+PTP+Q+ IPA L GRD +G A TGSGKT FVLPIL
Sbjct: 4 FAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQ- 62
Query: 206 CLEQETKLPFLPGEGPYG---LIICPSRELARQTHDIIQYYCAALPIG 250
KL E PYG L++ P+RELA Q + Q+ P+G
Sbjct: 63 ------KL----SEDPYGIFCLVLTPTRELAYQIAE--QFRVLGKPLG 98
Score = 137 (53.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 39/94 (41%), Positives = 54/94 (57%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG---LIICPSRELARQTHD 64
RD +G A TGSGKT FVLPIL KL E PYG L++ P+RELA Q +
Sbjct: 40 RDCLGCAKTGSGKTAAFVLPILQ-------KL----SEDPYGIFCLVLTPTRELAYQIAE 88
Query: 65 IIQYYCAALPIPLRTCLAIGGVPM-NQSLDVIKK 97
Q+ P+ L+ C+ +GG+ M Q+L++ +K
Sbjct: 89 --QFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120
>CGD|CAL0003464 [details] [associations]
symbol:orf19.5991 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000466 "maturation of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000463 "maturation of LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271 Pfam:PF08147
ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
CGD:CAL0003464 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AACQ01000003
EMBL:AACQ01000004 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_723054.1
RefSeq:XP_723201.1 STRING:Q5ANB2 GeneID:3635229 GeneID:3635325
KEGG:cal:CaO19.13412 KEGG:cal:CaO19.5991 KO:K14808 Uniprot:Q5ANB2
Length = 908
Score = 172 (65.6 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 40/99 (40%), Positives = 60/99 (60%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
SF L + ++ + KG K+PTPIQ + IP + GRD++G+A TGSGKT FVLP++
Sbjct: 100 SFASFGLTKFILANIAKKGYKQPTPIQRKTIPLIMEGRDVVGMARTGSGKTAAFVLPLIE 159
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243
++ PG G +I+ PSRELA QT+ ++ +
Sbjct: 160 RLKSRQ------PG-GVRAVILSPSRELALQTYKQVKEF 191
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 169 (64.5 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 40/91 (43%), Positives = 55/91 (60%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
SF+ + + E L A + G KKPT IQ++ IP AL GRD+IG+A TGSGKT F +P+L
Sbjct: 80 SFKELGVTEVLCEACDQLGWKKPTKIQIEAIPVALQGRDVIGLAETGSGKTGAFAVPVLQ 139
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQ 235
L +L + L++ P+RELA Q
Sbjct: 140 SLLACAQRL--------HTLVLTPTRELAFQ 162
Score = 119 (46.9 bits), Expect = 0.00017, P = 0.00017
Identities = 33/91 (36%), Positives = 52/91 (57%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD+IG+A TGSGKT F +P+L L +L + L++ P+RELA Q + Q
Sbjct: 117 RDVIGLAETGSGKTGAFAVPVLQSLLACAQRL--------HTLVLTPTRELAFQIAE--Q 166
Query: 68 YYCAALPIPLRTCLAIGGVPM-NQSLDVIKK 97
+ I ++T + +GG+ M +Q+L + KK
Sbjct: 167 FDALGSSIGVKTAVIVGGIDMMSQALVLAKK 197
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 168 (64.2 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 50/156 (32%), Positives = 81/156 (51%)
Query: 92 LDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD--VPPACCSFR-- 147
L I+K Y + +T+ +P + + ++II +L+ EG+ +P C F
Sbjct: 2 LPPIEKNF-YKESSRTACMSPEEVELWRKENNNIICDDLK---EGEKRCIPNPVCKFEDV 57
Query: 148 LMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCL 207
+ P+ + + G +KPTPIQ Q P L G D+IGIA TG+GKTL +++P +
Sbjct: 58 FEQYPDIMAN-IRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLA 116
Query: 208 EQETKLPFLPGEGPYGLIICPSRELARQTH-DIIQY 242
Q +P GP L++ P+RELA Q + ++Y
Sbjct: 117 SQP--IPKDKRGGPGMLVLAPTRELALQVEAECLKY 150
>UNIPROTKB|D4A824 [details] [associations]
symbol:Ddx18 "Protein Ddx18" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1549712 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
EMBL:AC128353 IPI:IPI00393022 Ensembl:ENSRNOT00000028172
ArrayExpress:D4A824 Uniprot:D4A824
Length = 662
Score = 170 (64.9 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 38/89 (42%), Positives = 55/89 (61%)
Query: 153 ESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETK 212
E+ ++A+E G K T IQ + I L GRD++ A TGSGKTL F++P++ E K
Sbjct: 180 ENTLKAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVI----ELIVK 235
Query: 213 LPFLPGEGPYGLIICPSRELARQTHDIIQ 241
L F+P G LI+ P+RELA QT +++
Sbjct: 236 LKFMPRNGTGVLILSPTRELAMQTFGVLK 264
Score = 124 (48.7 bits), Expect = 6.6e-05, P = 6.6e-05
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD++ A TGSGKTL F++P++ E KL F+P G LI+ P+RELA QT +++
Sbjct: 209 RDLLAAAKTGSGKTLAFLIPVI----ELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLK 264
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 167 (63.8 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 42/106 (39%), Positives = 57/106 (53%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+FR + L LV G+ +PTP+Q IP L GRD +G A TGSGKT FVLP+L
Sbjct: 3 AFRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQ 62
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIG 250
E P+ G + L++ P+RELA Q + Q+ P+G
Sbjct: 63 VLSED----PY----GIFCLVLTPTRELAYQIAE--QFRVLGKPLG 98
Score = 136 (52.9 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 35/91 (38%), Positives = 53/91 (58%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD +G A TGSGKT FVLP+L E P+ G + L++ P+RELA Q + Q
Sbjct: 40 RDCLGCAKTGSGKTAAFVLPVLQVLSED----PY----GIFCLVLTPTRELAYQIAE--Q 89
Query: 68 YYCAALPIPLRTCLAIGGVPM-NQSLDVIKK 97
+ P+ L+ C+ +GG+ M Q+L++ +K
Sbjct: 90 FRVLGKPLGLKDCVVVGGLDMVAQALELSRK 120
>RGD|1549712 [details] [associations]
symbol:Ddx18 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 18"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1549712 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 OMA:KDGYRSY
GeneTree:ENSGT00680000100037 CTD:8886 HOVERGEN:HBG105702
OrthoDB:EOG4894MF EMBL:AC128353 EMBL:BC083919 IPI:IPI00367078
RefSeq:NP_001006997.1 UniGene:Rn.26598 STRING:Q5XHY0
Ensembl:ENSRNOT00000037203 GeneID:308490 KEGG:rno:308490
UCSC:RGD:1549712 InParanoid:Q5XHY0 NextBio:658990
Genevestigator:Q5XHY0 Uniprot:Q5XHY0
Length = 674
Score = 170 (64.9 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 38/89 (42%), Positives = 55/89 (61%)
Query: 153 ESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETK 212
E+ ++A+E G K T IQ + I L GRD++ A TGSGKTL F++P++ E K
Sbjct: 192 ENTLKAIEEMGFKHMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVI----ELIVK 247
Query: 213 LPFLPGEGPYGLIICPSRELARQTHDIIQ 241
L F+P G LI+ P+RELA QT +++
Sbjct: 248 LKFMPRNGTGVLILSPTRELAMQTFGVLK 276
Score = 124 (48.7 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 27/60 (45%), Positives = 39/60 (65%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD++ A TGSGKTL F++P++ E KL F+P G LI+ P+RELA QT +++
Sbjct: 221 RDLLAAAKTGSGKTLAFLIPVI----ELIVKLKFMPRNGTGVLILSPTRELAMQTFGVLK 276
>FB|FBgn0052344 [details] [associations]
symbol:CG32344 species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012541 Pfam:PF00270 Pfam:PF00271
Pfam:PF08147 ProDom:PD024971 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:AE014296
GO:GO:0022008 GO:GO:0006200 GO:GO:0003723 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14808
GeneTree:ENSGT00550000075100 HSSP:P10081 EMBL:AY075397
RefSeq:NP_612028.4 UniGene:Dm.796 SMR:Q8SY39 IntAct:Q8SY39
STRING:Q8SY39 EnsemblMetazoa:FBtr0072576 GeneID:326208
KEGG:dme:Dmel_CG32344 UCSC:CG32344-RA FlyBase:FBgn0052344
InParanoid:Q8SY39 OMA:NANDEMS OrthoDB:EOG40CFZ4 GenomeRNAi:326208
NextBio:847633 Uniprot:Q8SY39
Length = 827
Score = 171 (65.3 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 39/96 (40%), Positives = 57/96 (59%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
F+ M L L++ + +G K PTPIQ + IP L GRD++ +A TGSGKT F++P+
Sbjct: 41 FQSMGLGFELIKGITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEK 100
Query: 206 CLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241
+E P +G LI+ P+RELA QT+ I+
Sbjct: 101 LQRRE------PTKGARALILSPTRELAVQTYKFIK 130
>MGI|MGI:2136689 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
Length = 480
Score = 168 (64.2 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 47/108 (43%), Positives = 59/108 (54%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
F + L LV G+K+PTP+Q+ IPA L GRD +G A TGSGKT FVLPIL
Sbjct: 4 FAEIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQ- 62
Query: 206 CLEQETKLPFLPGEGPYG---LIICPSRELARQTHDIIQYYCAALPIG 250
KL E PYG L++ P+RELA Q + Q+ P+G
Sbjct: 63 ------KL----SEDPYGIFCLVLTPTRELAYQIAE--QFRVLGKPLG 98
Score = 137 (53.3 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 39/94 (41%), Positives = 54/94 (57%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG---LIICPSRELARQTHD 64
RD +G A TGSGKT FVLPIL KL E PYG L++ P+RELA Q +
Sbjct: 40 RDCLGCAKTGSGKTAAFVLPILQ-------KL----SEDPYGIFCLVLTPTRELAYQIAE 88
Query: 65 IIQYYCAALPIPLRTCLAIGGVPM-NQSLDVIKK 97
Q+ P+ L+ C+ +GG+ M Q+L++ +K
Sbjct: 89 --QFRVLGKPLGLKDCIIVGGMDMVAQALELSRK 120
>UNIPROTKB|G3MYF0 [details] [associations]
symbol:LOC100300937 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
Length = 608
Score = 169 (64.5 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 50/142 (35%), Positives = 76/142 (53%)
Query: 104 PIKTS-WRAPRCILSLPDQVHDIIRR---NLRI--LVEGDD--VPPACCSFR--LMKLPE 153
PIK + + + SL + +I R+ N+R L EG+ +P C+F + PE
Sbjct: 152 PIKKNLYIESKATHSLSEAQVEIWRKENFNIRCDDLTEGEKRPIPKPTCTFEDAFQQYPE 211
Query: 154 SLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKL 213
+++++ G +KPTPIQ Q P L G D+IGIA TG+GKTL +++P + Q
Sbjct: 212 -IMQSIRRAGFQKPTPIQSQSWPIILQGIDLIGIAQTGTGKTLSYLMPGFIHIHSQPVSR 270
Query: 214 PFLPGEGPYGLIICPSRELARQ 235
GP L++ P+RELA Q
Sbjct: 271 K--QRNGPGMLVLTPTRELALQ 290
>UNIPROTKB|E7EX41 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC055713 EMBL:AC117503 HGNC:HGNC:20085 ChiTaRS:DDX55
IPI:IPI01018972 ProteinModelPortal:E7EX41 SMR:E7EX41
Ensembl:ENST00000354291 ArrayExpress:E7EX41 Bgee:E7EX41
Uniprot:E7EX41
Length = 191
Score = 148 (57.2 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 37/99 (37%), Positives = 53/99 (53%)
Query: 151 LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQE 210
L ++ AL G TP+Q IP + +D+ A TGSGKTL FV+PIL L +E
Sbjct: 16 LHPQVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEILLRRE 75
Query: 211 TKLPFLPGEGPYG-LIICPSRELARQTHDIIQYYCAALP 248
KL + G +II P+RELA Q +++ ++ P
Sbjct: 76 EKLK----KSQVGAIIITPTRELAIQIDEVLSHFTKHFP 110
Score = 125 (49.1 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 33/95 (34%), Positives = 51/95 (53%)
Query: 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG-LIICPSRELARQT 62
+ ++D+ A TGSGKTL FV+PIL L +E KL + G +II P+RELA Q
Sbjct: 43 FMRNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLK----KSQVGAIIITPTRELAIQI 98
Query: 63 HDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKK 97
+++ ++ P L IGG + ++ K+
Sbjct: 99 DEVLSHFTKHFP-EFSQILWIGGRNPGEDVERFKQ 132
>UNIPROTKB|A1A4H6 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:BC126497 IPI:IPI00734460 RefSeq:NP_001073740.1 UniGene:Bt.2644
ProteinModelPortal:A1A4H6 PRIDE:A1A4H6 Ensembl:ENSBTAT00000057089
GeneID:514567 KEGG:bta:514567 CTD:55661
GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH NextBio:20871404
Uniprot:A1A4H6
Length = 765
Score = 170 (64.9 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 40/97 (41%), Positives = 55/97 (56%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
SF+ M L L++A+ A G K+PTPIQ IP L G+DI A TG+GKT F LP+L
Sbjct: 188 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL- 246
Query: 205 FCLEQETKLPFLPGEGPYG--LIICPSRELARQTHDI 239
+L + P + P L++ P+REL Q H +
Sbjct: 247 ------ERLIYKPRQAPVTRVLVLVPTRELGIQVHSV 277
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 170 (64.9 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 40/97 (41%), Positives = 55/97 (56%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
SF+ M L L++A+ A G K+PTPIQ IP L G+DI A TG+GKT F LP+L
Sbjct: 188 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL- 246
Query: 205 FCLEQETKLPFLPGEGPYG--LIICPSRELARQTHDI 239
+L + P + P L++ P+REL Q H +
Sbjct: 247 ------ERLIYKPRQSPVTRVLVLVPTRELGIQVHSV 277
>UNIPROTKB|Q8EHT1 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 167 (63.8 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 39/110 (35%), Positives = 61/110 (55%)
Query: 141 PACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVL 200
P +F + L +L +AL + +K PT +Q IPA L+GRD++ ++ TGSGKT F L
Sbjct: 14 PESLTFAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGL 72
Query: 201 PILMFCLEQ---ETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
P+L +Q +T +P P L++ P+RELA Q + + + L
Sbjct: 73 PLLQILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQL 122
Score = 132 (51.5 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 32/90 (35%), Positives = 47/90 (52%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQ---ETKLPFLPGEGPYGLIICPSRELARQTHD 64
RD++ ++ TGSGKT F LP+L +Q +T +P P L++ P+RELA Q +
Sbjct: 54 RDLLALSQTGSGKTFAFGLPLLQILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSE 113
Query: 65 IIQYYCAALPI--PLRTCLAIGGVPMNQSL 92
+ + L PL L GGV + Q L
Sbjct: 114 ALHALASQLSTSAPLNIQLLCGGVALEQQL 143
>TIGR_CMR|SO_1136 [details] [associations]
symbol:SO_1136 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_716761.1 ProteinModelPortal:Q8EHT1 GeneID:1168967
KEGG:son:SO_1136 PATRIC:23521912 OMA:IGAKENA ProtClustDB:CLSK869861
Uniprot:Q8EHT1
Length = 447
Score = 167 (63.8 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 39/110 (35%), Positives = 61/110 (55%)
Query: 141 PACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVL 200
P +F + L +L +AL + +K PT +Q IPA L+GRD++ ++ TGSGKT F L
Sbjct: 14 PESLTFAELGLNAALRKALPTR-LKHPTRVQQLAIPAILAGRDLLALSQTGSGKTFAFGL 72
Query: 201 PILMFCLEQ---ETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAAL 247
P+L +Q +T +P P L++ P+RELA Q + + + L
Sbjct: 73 PLLQILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSEALHALASQL 122
Score = 132 (51.5 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 32/90 (35%), Positives = 47/90 (52%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQ---ETKLPFLPGEGPYGLIICPSRELARQTHD 64
RD++ ++ TGSGKT F LP+L +Q +T +P P L++ P+RELA Q +
Sbjct: 54 RDLLALSQTGSGKTFAFGLPLLQILWQQIAVQTTAKSVPAAKPLALVLVPTRELALQVSE 113
Query: 65 IIQYYCAALPI--PLRTCLAIGGVPMNQSL 92
+ + L PL L GGV + Q L
Sbjct: 114 ALHALASQLSTSAPLNIQLLCGGVALEQQL 143
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 170 (64.9 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 40/97 (41%), Positives = 55/97 (56%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
SF+ M L L++A+ A G K+PTPIQ IP L G+DI A TG+GKT F LP+L
Sbjct: 209 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL- 267
Query: 205 FCLEQETKLPFLPGEGPYG--LIICPSRELARQTHDI 239
+L + P + P L++ P+REL Q H +
Sbjct: 268 ------ERLIYKPRQSPVTRVLVLVPTRELGIQVHSV 298
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 166 (63.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 41/99 (41%), Positives = 57/99 (57%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
SF + L + LV+ + G +KPT IQ Q IP L GRD+I A TG+GKT FVLPIL
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243
+ +T+ + LI+ P+RELA Q + ++ Y
Sbjct: 62 KLRQGQTQRK----KRVRALILVPTRELAMQVAEKVEQY 96
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 166 (63.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 41/99 (41%), Positives = 57/99 (57%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
SF + L + LV+ + G +KPT IQ Q IP L GRD+I A TG+GKT FVLPIL
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243
+ +T+ + LI+ P+RELA Q + ++ Y
Sbjct: 62 KLRQGQTQRK----KRVRALILVPTRELAMQVAEKVEQY 96
>UNIPROTKB|Q96GQ7 [details] [associations]
symbol:DDX27 "Probable ATP-dependent RNA helicase DDX27"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
CTD:55661 HOVERGEN:HBG106162 KO:K13181 OMA:TRTFTDH EMBL:AY044431
EMBL:AF336851 EMBL:AL049766 EMBL:AL357560 EMBL:BC009304
EMBL:BC011927 EMBL:BC016060 EMBL:BC126287 EMBL:BC130275
EMBL:BC144125 EMBL:AK022979 EMBL:AK000603 EMBL:AF193054
EMBL:AF161377 IPI:IPI00293078 RefSeq:NP_060365.7 UniGene:Hs.129261
UniGene:Hs.65234 ProteinModelPortal:Q96GQ7 SMR:Q96GQ7 IntAct:Q96GQ7
MINT:MINT-1420816 STRING:Q96GQ7 PhosphoSite:Q96GQ7 DMDM:29427946
SWISS-2DPAGE:Q96GQ7 PaxDb:Q96GQ7 PeptideAtlas:Q96GQ7 PRIDE:Q96GQ7
DNASU:55661 Ensembl:ENST00000371764 GeneID:55661 KEGG:hsa:55661
UCSC:uc002xuh.3 GeneCards:GC20P047835 HGNC:HGNC:15837 HPA:HPA047087
neXtProt:NX_Q96GQ7 PharmGKB:PA27213 InParanoid:Q96GQ7
OrthoDB:EOG4NVZJV PhylomeDB:Q96GQ7 ChiTaRS:DDX27 GenomeRNAi:55661
NextBio:60399 ArrayExpress:Q96GQ7 Bgee:Q96GQ7 CleanEx:HS_DDX27
Genevestigator:Q96GQ7 GermOnline:ENSG00000124228 Uniprot:Q96GQ7
Length = 796
Score = 170 (64.9 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 40/97 (41%), Positives = 55/97 (56%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
SF+ M L L++A+ A G K+PTPIQ IP L G+DI A TG+GKT F LP+L
Sbjct: 219 SFQDMNLSRPLLKAITAMGFKQPTPIQKACIPVGLLGKDICACAATGTGKTAAFALPVL- 277
Query: 205 FCLEQETKLPFLPGEGPYG--LIICPSRELARQTHDI 239
+L + P + P L++ P+REL Q H +
Sbjct: 278 ------ERLIYKPRQAPVTRVLVLVPTRELGIQVHSV 308
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 166 (63.5 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 46/109 (42%), Positives = 58/109 (53%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
SF +KL ++ A+ G KPT IQ + IP L+G+DII A TG+GKT FVLP+L
Sbjct: 2 SFSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLE 61
Query: 205 FCLEQ--ETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIGS 251
Q ET L + LI+ P+RELA Q I Y L I S
Sbjct: 62 QLNSQYKETGKK-LRAKRIRALILVPTRELAVQVEASISQYAKYLDISS 109
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 168 (64.2 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 38/94 (40%), Positives = 55/94 (58%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+F+ + L L+ ++E+ KPTPIQ + IP AL G+DIIG+A TGSGKT F +PIL
Sbjct: 124 TFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQ 183
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHD 238
+ P+ + L++ P+REL Q D
Sbjct: 184 SLWHAQQ--PY------FALVLAPTRELTFQIKD 209
Score = 115 (45.5 bits), Expect = 0.00053, P = 0.00053
Identities = 31/91 (34%), Positives = 51/91 (56%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
+DIIG+A TGSGKT F +PIL + P+ + L++ P+REL Q D
Sbjct: 161 KDIIGLAQTGSGKTAAFAIPILQSLWHAQQ--PY------FALVLAPTRELTFQIKDTFD 212
Query: 68 YYCAALPIPLRTCLAIGGVPM-NQSLDVIKK 97
+++ LR+ +GG+ M +Q+ D+++K
Sbjct: 213 ALGSSMG--LRSSCIVGGMDMMDQARDLMRK 241
>TAIR|locus:2075034 [details] [associations]
symbol:AT3G09720 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009220
"pyrimidine ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AC016661
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000242486 KO:K14779 OMA:NVMKQSG EMBL:BT005833
EMBL:AK227326 IPI:IPI00542757 RefSeq:NP_187583.2 UniGene:At.40050
ProteinModelPortal:Q84TG1 SMR:Q84TG1 STRING:Q84TG1 PaxDb:Q84TG1
PRIDE:Q84TG1 EnsemblPlants:AT3G09720.1 GeneID:820129
KEGG:ath:AT3G09720 KEGG:dosa:Os07t0647900-01 GeneFarm:1036
TAIR:At3g09720 InParanoid:Q84TG1 PhylomeDB:Q84TG1
ProtClustDB:CLSN2690529 Genevestigator:Q84TG1 GermOnline:AT3G09720
Uniprot:Q84TG1
Length = 541
Score = 168 (64.2 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 45/114 (39%), Positives = 62/114 (54%)
Query: 127 RRNLRILVEGDDVPPACCSFRLMKLPES----LVRALEAKGIKKPTPIQVQGIPAALSGR 182
R+ I V G+++PP SF + ++R L G K+PTPIQ Q IP LSGR
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 183 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT 236
+ A TGSGKT F+ P+L+ + K P +G +I+ P+RELA QT
Sbjct: 180 ECFACAPTGSGKTFAFICPMLI-----KLKRPST--DGIRAVILSPARELAAQT 226
>ZFIN|ZDB-GENE-031030-3 [details] [associations]
symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
Length = 468
Score = 167 (63.8 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 45/109 (41%), Positives = 61/109 (55%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+F + L E L++ + GI +PT +Q + IPA L GRD +G A TGSGKT FVLP+L
Sbjct: 3 TFESLGLSEWLIQQCKQMGISRPTAVQEKCIPAILDGRDCMGCAKTGSGKTAAFVLPVLQ 62
Query: 205 FCLEQETKLPFLPGEGPYG---LIICPSRELARQTHDIIQYYCAALPIG 250
KL E PYG L++ P+RELA Q + Q+ P+G
Sbjct: 63 -------KL----SEDPYGVFCLVLTPTRELAYQIAE--QFRVLGKPLG 98
Score = 140 (54.3 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 39/96 (40%), Positives = 54/96 (56%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG---LIICPSRELARQT 62
+ RD +G A TGSGKT FVLP+L KL E PYG L++ P+RELA Q
Sbjct: 38 DGRDCMGCAKTGSGKTAAFVLPVLQ-------KL----SEDPYGVFCLVLTPTRELAYQI 86
Query: 63 HDIIQYYCAALPIPLRTCLAIGGVPM-NQSLDVIKK 97
+ Q+ P+ L+ C+ +GG+ M Q L++ KK
Sbjct: 87 AE--QFRVLGKPLGLKDCIIVGGMDMVTQGLELSKK 120
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 167 (63.8 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 42/106 (39%), Positives = 57/106 (53%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+FR + L LV G+ +PTP+Q IP L GRD +G A TGSGKT FVLP+L
Sbjct: 6 AFRELGLAPWLVEQARQMGLSRPTPVQASCIPPILQGRDCLGCAKTGSGKTAAFVLPVLQ 65
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIG 250
E P+ G + L++ P+RELA Q + Q+ P+G
Sbjct: 66 VLSED----PY----GIFCLVLTPTRELAYQIAE--QFRVLGKPLG 101
Score = 136 (52.9 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 35/91 (38%), Positives = 53/91 (58%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD +G A TGSGKT FVLP+L E P+ G + L++ P+RELA Q + Q
Sbjct: 43 RDCLGCAKTGSGKTAAFVLPVLQVLSED----PY----GIFCLVLTPTRELAYQIAE--Q 92
Query: 68 YYCAALPIPLRTCLAIGGVPM-NQSLDVIKK 97
+ P+ L+ C+ +GG+ M Q+L++ +K
Sbjct: 93 FRVLGKPLGLKDCVVVGGLDMVAQALELSRK 123
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 166 (63.5 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 39/105 (37%), Positives = 56/105 (53%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
SF ++ L L+RA+ +G +PTP+Q Q IP L RD++ A TG+GKT F LP+L
Sbjct: 11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPI 249
L LI+ P+RELA Q + ++ Y LP+
Sbjct: 71 RLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPL 115
Score = 116 (45.9 bits), Expect = 0.00028, P = 0.00028
Identities = 52/171 (30%), Positives = 83/171 (48%)
Query: 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 66
+RD++ A TG+GKT F LP+L L LI+ P+RELA Q + +
Sbjct: 47 ARDVMVTAQTGTGKTAGFTLPLLQRLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECV 106
Query: 67 QYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQ-VHDI 125
+ Y LP L+ + GGV + ++ +++G+ D + + P +L L +Q V ++
Sbjct: 107 RAYGKYLP--LKATVVHGGVSIKPQINHLRRGV---DILVAT---PGRLLDLVNQGVLNL 158
Query: 126 IRRNLRILVEGD---DVPPACCSFRLMKL-PES----LVRALEAKGIKKPT 168
R +L E D D+ R++KL PES L A +K IK+ T
Sbjct: 159 SRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQNLLFSATFSKEIKELT 209
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 166 (63.5 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 39/105 (37%), Positives = 56/105 (53%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
SF ++ L L+RA+ +G +PTP+Q Q IP L RD++ A TG+GKT F LP+L
Sbjct: 11 SFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQ 70
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPI 249
L LI+ P+RELA Q + ++ Y LP+
Sbjct: 71 RLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPL 115
Score = 116 (45.9 bits), Expect = 0.00028, P = 0.00028
Identities = 52/171 (30%), Positives = 83/171 (48%)
Query: 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 66
+RD++ A TG+GKT F LP+L L LI+ P+RELA Q + +
Sbjct: 47 ARDVMVTAQTGTGKTAGFTLPLLQRLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECV 106
Query: 67 QYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQ-VHDI 125
+ Y LP L+ + GGV + ++ +++G+ D + + P +L L +Q V ++
Sbjct: 107 RAYGKYLP--LKATVVHGGVSIKPQINHLRRGV---DILVAT---PGRLLDLVNQGVLNL 158
Query: 126 IRRNLRILVEGD---DVPPACCSFRLMKL-PES----LVRALEAKGIKKPT 168
R +L E D D+ R++KL PES L A +K IK+ T
Sbjct: 159 SRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQNLLFSATFSKEIKELT 209
>TAIR|locus:2032910 [details] [associations]
symbol:RH36 "RNA helicase 36" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] [GO:0009791 "post-embryonic development"
evidence=IMP] [GO:0090406 "pollen tube" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0009561 "megagametogenesis"
evidence=IMP] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003676
GO:GO:0009791 GO:GO:0009561 EMBL:AC006341 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
HOGENOM:HOG000268802 OMA:EVRTVEQ GO:GO:0090406 IPI:IPI00521131
PIR:G86297 RefSeq:NP_173078.1 UniGene:At.51634
ProteinModelPortal:Q9SA27 SMR:Q9SA27 PaxDb:Q9SA27 PRIDE:Q9SA27
EnsemblPlants:AT1G16280.1 GeneID:838197 KEGG:ath:AT1G16280
KEGG:dosa:Os07t0633500-00 GeneFarm:1012 TAIR:At1g16280
InParanoid:Q9SA27 PhylomeDB:Q9SA27 ProtClustDB:CLSN2679781
Genevestigator:Q9SA27 GermOnline:AT1G16280 Uniprot:Q9SA27
Length = 491
Score = 167 (63.8 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 38/91 (41%), Positives = 54/91 (59%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+F + L E V + G++KPTP+Q +P L+GRD++G+A TGSGKT F LPIL
Sbjct: 59 NFEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILH 118
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQ 235
E P+ G + L++ P+RELA Q
Sbjct: 119 RLAED----PY----GVFALVVTPTRELAFQ 141
Score = 125 (49.1 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 42/133 (31%), Positives = 65/133 (48%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD++G+A TGSGKT F LPIL E P+ G + L++ P+RELA Q + Q
Sbjct: 96 RDVLGLAQTGSGKTAAFALPILHRLAED----PY----GVFALVVTPTRELAFQLAE--Q 145
Query: 68 YYCAALPIPLRTCLAIGGVPM-NQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDII 126
+ + LR + +GG+ M Q++ ++ + + I T R + + PD
Sbjct: 146 FKALGSCLNLRCSVIVGGMDMLTQTMSLVSRP---HIVITTPGRIKVLLENNPDVPPVFS 202
Query: 127 RRNLRILVEGDDV 139
R +L E D V
Sbjct: 203 RTKFLVLDEADRV 215
>DICTYBASE|DDB_G0281925 [details] [associations]
symbol:DDB_G0281925 "DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
Uniprot:Q54T87
Length = 586
Score = 168 (64.2 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 42/115 (36%), Positives = 59/115 (51%)
Query: 127 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIG 186
R+ +L+EG P F + P + G PT IQ Q P L G D++G
Sbjct: 95 RKKHNVLIEGKSQPNPFQKFTDYEFPRMFQHIFQ--GFTAPTVIQGQSWPIILGGNDLVG 152
Query: 187 IAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEG--PYGLIICPSRELARQTHDI 239
+A TGSGKTL F+LP L+ + LP P G P L++ P+RELA+Q ++
Sbjct: 153 LAATGSGKTLAFLLPALLKIIS----LPKRPSYGATPLVLVMAPTRELAQQIEEV 203
Score = 124 (48.7 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 32/93 (34%), Positives = 50/93 (53%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEG--PYGLIICPSRELARQTHDII 66
D++G+A TGSGKTL F+LP L+ + LP P G P L++ P+RELA+Q ++
Sbjct: 149 DLVGLAATGSGKTLAFLLPALLKIIS----LPKRPSYGATPLVLVMAPTRELAQQIEEVC 204
Query: 67 QYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGI 99
+ I R A GG+ +++ G+
Sbjct: 205 KTSIRGTSI--RQLCAYGGLGKIDQSRILRNGV 235
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 167 (63.8 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 42/92 (45%), Positives = 54/92 (58%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPIL- 203
SF + L L++A + KPTPIQ + IP AL G DIIG+A TGSGKT F +PIL
Sbjct: 82 SFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPILN 141
Query: 204 MFCLEQETKLPFLPGEGPYGLIICPSRELARQ 235
+QE P+ Y I+ P+RELA+Q
Sbjct: 142 RLWHDQE---PY------YACILAPTRELAQQ 164
Score = 116 (45.9 bits), Expect = 0.00036, P = 0.00036
Identities = 34/91 (37%), Positives = 53/91 (58%)
Query: 9 DIIGIAFTGSGKTLVFVLPIL-MFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
DIIG+A TGSGKT F +PIL +QE P+ Y I+ P+RELA+Q +
Sbjct: 120 DIIGLAQTGSGKTAAFAIPILNRLWHDQE---PY------YACILAPTRELAQQIKETFD 170
Query: 68 YYCAALPIPLRTCLAIGGVPM-NQSLDVIKK 97
+ + + TC+ +GG+ M +Q+ D+++K
Sbjct: 171 SLGSLMGVR-STCI-VGGMNMMDQARDLMRK 199
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 167 (63.8 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 40/98 (40%), Positives = 59/98 (60%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+F LPE+++ K +KP+PIQ P L GRD+IGIA TGSGKTL F +P +M
Sbjct: 117 TFAESNLPENVLDC--CKTFEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIM 174
Query: 205 FCLEQETKLPFLPGE-GPYGLIICPSRELARQTHDIIQ 241
L++ K+ + P L++ P+RELA Q D+++
Sbjct: 175 HVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLR 212
Score = 140 (54.3 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 34/95 (35%), Positives = 53/95 (55%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGE-GPYGLIICPSRELARQTHD 64
+ RD+IGIA TGSGKTL F +P +M L++ K+ + P L++ P+RELA Q D
Sbjct: 150 DGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISD 209
Query: 65 IIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGI 99
+++ A P L++ GG + I+ G+
Sbjct: 210 VLRE--AGEPCGLKSICVYGGSSKGPQISAIRSGV 242
>UNIPROTKB|F1NVJ6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
Length = 642
Score = 168 (64.2 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 50/156 (32%), Positives = 81/156 (51%)
Query: 92 LDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDD--VPPACCSFR-- 147
L I+K Y + +T+ +P + + ++II +L+ EG+ +P C F
Sbjct: 189 LPPIEKNF-YKESSRTACMSPEEVELWRKENNNIICDDLK---EGEKRCIPNPVCKFEDV 244
Query: 148 LMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCL 207
+ P+ + + G +KPTPIQ Q P L G D+IGIA TG+GKTL +++P +
Sbjct: 245 FEQYPDIMAN-IRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLA 303
Query: 208 EQETKLPFLPGEGPYGLIICPSRELARQTH-DIIQY 242
Q +P GP L++ P+RELA Q + ++Y
Sbjct: 304 SQP--IPKDKRGGPGMLVLAPTRELALQVEAECLKY 337
>TAIR|locus:2825324 [details] [associations]
symbol:AT1G71370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0003723 EMBL:AC016163 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268803 KO:K14809 EMBL:AK118294 IPI:IPI00527105
RefSeq:NP_177293.1 UniGene:At.70349 ProteinModelPortal:Q8GXD6
SMR:Q8GXD6 PRIDE:Q8GXD6 EnsemblPlants:AT1G71370.1 GeneID:843478
KEGG:ath:AT1G71370 GeneFarm:1028 TAIR:At1g71370 InParanoid:Q8GXD6
OMA:EYLKCEA PhylomeDB:Q8GXD6 ProtClustDB:CLSN2914591
Genevestigator:Q8GXD6 GermOnline:AT1G71370 Uniprot:Q8GXD6
Length = 558
Score = 167 (63.8 bits), Expect = 3.7e-10, P = 3.7e-10
Identities = 36/98 (36%), Positives = 57/98 (58%)
Query: 151 LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQE 210
L E ++ AL+ G + TP+Q + IP S +D++ A TGSGKTL F+LP + + +
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEI-IRRS 81
Query: 211 TKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALP 248
P P + G+II P+REL+ Q H + + + + LP
Sbjct: 82 NSYPPKPHQ-VMGVIISPTRELSAQIHKVAEPFVSTLP 118
Score = 125 (49.1 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
+D++ A TGSGKTL F+LP + + + P P + G+II P+REL+ Q H + +
Sbjct: 54 KDVVVDAATGSGKTLAFLLPFIEI-IRRSNSYPPKPHQ-VMGVIISPTRELSAQIHKVAE 111
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKK 97
+ + LP + + L +GG + ++ +++
Sbjct: 112 PFVSTLP-NVNSVLLVGGREVEADMNTLEE 140
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 165 (63.1 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 39/93 (41%), Positives = 55/93 (59%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
F+ ++ + A G + PTPIQ Q IPA ++GRD++G+A TG+GKT F LPIL
Sbjct: 3 FKSFGFHPAVATGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPIL-H 61
Query: 206 CLEQETKLPFLPGEGPYGLIICPSRELARQTHD 238
L+Q + G L+I P+RELA Q +D
Sbjct: 62 RLQQGER-----GR-VRALVIAPTRELAEQIND 88
Score = 119 (46.9 bits), Expect = 0.00014, P = 0.00014
Identities = 34/93 (36%), Positives = 49/93 (52%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD++G+A TG+GKT F LPIL L+Q + G L+I P+RELA Q +D
Sbjct: 39 RDVMGLAQTGTGKTAAFALPIL-HRLQQGER-----GR-VRALVIAPTRELAEQIND--S 89
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ LR+ GGV +N + +K G +
Sbjct: 90 FVTLGRQTRLRSVTVYGGVGVNPQVQKLKAGAE 122
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 166 (63.5 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 41/107 (38%), Positives = 61/107 (57%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
SF + L L +A+ +G P+PIQ Q IPA L+G+D++ A TG+GKT F LP+L
Sbjct: 2 SFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLE 61
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPIGS 251
L + K G+ L++ P+RELA Q + ++ Y LP+ S
Sbjct: 62 L-LAKGHKAK--SGQ-TRALVLTPTRELAAQVGESVETYGKYLPLRS 104
Score = 128 (50.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 32/92 (34%), Positives = 53/92 (57%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
+D++ A TG+GKT F LP+L L + K G+ L++ P+RELA Q + ++
Sbjct: 39 KDVMAAAQTGTGKTAGFTLPLLEL-LAKGHKAK--SGQ-TRALVLTPTRELAAQVGESVE 94
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGI 99
Y LP LR+ + GGVP+N ++ ++ G+
Sbjct: 95 TYGKYLP--LRSAVVFGGVPINPQINKLRHGV 124
>UNIPROTKB|Q9NUL7 [details] [associations]
symbol:DDX28 "Probable ATP-dependent RNA helicase DDX28"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0042645 "mitochondrial nucleoid" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 GO:GO:0042645 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AF329821 EMBL:AK002144
EMBL:AC130462 EMBL:BC024273 IPI:IPI00020050 RefSeq:NP_060850.2
UniGene:Hs.458313 ProteinModelPortal:Q9NUL7 SMR:Q9NUL7
IntAct:Q9NUL7 PhosphoSite:Q9NUL7 DMDM:296434476 PaxDb:Q9NUL7
PRIDE:Q9NUL7 Ensembl:ENST00000332395 GeneID:55794 KEGG:hsa:55794
UCSC:uc002evh.2 CTD:55794 GeneCards:GC16M068055 HGNC:HGNC:17330
HPA:HPA041911 MIM:607618 neXtProt:NX_Q9NUL7 PharmGKB:PA27214
HOGENOM:HOG000008689 HOVERGEN:HBG081424 InParanoid:Q9NUL7
OMA:RARRDHF OrthoDB:EOG42RD7H PhylomeDB:Q9NUL7 GenomeRNAi:55794
NextBio:60915 Bgee:Q9NUL7 CleanEx:HS_DDX28 Genevestigator:Q9NUL7
GermOnline:ENSG00000182810 Uniprot:Q9NUL7
Length = 540
Score = 166 (63.5 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 41/99 (41%), Positives = 59/99 (59%)
Query: 145 SFRLMKLPESLVRALE--AKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPI 202
SF + L ++ AL+ A + +PT +Q IP+ L GR ++ A TGSGKTL ++LP+
Sbjct: 127 SFADLGLEPRVLHALQEAAPEVVQPTTVQSSTIPSLLRGRHVVCAAETGSGKTLSYLLPL 186
Query: 203 LMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241
L L Q + L LP P GL++ PSRELA+Q + Q
Sbjct: 187 LQRLLGQPS-LDSLPIPAPRGLVLVPSRELAQQVRAVAQ 224
Score = 121 (47.7 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 28/60 (46%), Positives = 38/60 (63%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
R ++ A TGSGKTL ++LP+L L Q + L LP P GL++ PSRELA+Q + Q
Sbjct: 166 RHVVCAAETGSGKTLSYLLPLLQRLLGQPS-LDSLPIPAPRGLVLVPSRELAQQVRAVAQ 224
Score = 45 (20.9 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 119 PDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALE 160
P + D I R R+ G +VP SF SLV+ +E
Sbjct: 475 PPTLQDYIHRAGRVGRVGSEVPGTVISFVTHPWDVSLVQKIE 516
>DICTYBASE|DDB_G0274325 [details] [associations]
symbol:ddx52 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0274325 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000151_GR GO:GO:0016887 GO:GO:0003723
EMBL:AAFI02000012 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K14779 RefSeq:XP_643949.1
ProteinModelPortal:Q86IZ9 EnsemblProtists:DDB0234211 GeneID:8619377
KEGG:ddi:DDB_G0274325 OMA:NGITSHE Uniprot:Q86IZ9
Length = 668
Score = 167 (63.8 bits), Expect = 4.9e-10, P = 4.9e-10
Identities = 44/115 (38%), Positives = 63/115 (54%)
Query: 127 RRNLRILVEGDDVPPACCSFRLM----KLPESLVRALEAKGIKKPTPIQVQGIPAALSGR 182
R RI V+G D+P F + K+ + L+ + G K+P+PIQ+Q IP L R
Sbjct: 178 RNKHRIKVDGTDIPDPMTEFSQLENRFKVRKYLLNNINEIGYKEPSPIQMQVIPILLKER 237
Query: 183 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 237
+++ IA TGSGKT F +PIL E + EG +II P+RELA+Q +
Sbjct: 238 EVVAIAPTGSGKTASFSIPILQALYEPKK-------EGFRSVIIAPTRELAQQIY 285
>FB|FBgn0025140 [details] [associations]
symbol:pit "pitchoune" species:7227 "Drosophila melanogaster"
[GO:0005730 "nucleolus" evidence=NAS;IDA] [GO:0016049 "cell growth"
evidence=IMP] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005634
"nucleus" evidence=NAS] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 KO:K13179 OMA:KDGYRSY EMBL:U84552 EMBL:AY071402
EMBL:AY119620 RefSeq:NP_524446.3 RefSeq:NP_732694.2
UniGene:Dm.33428 ProteinModelPortal:Q9VD51 SMR:Q9VD51
DIP:DIP-19700N MINT:MINT-1004790 STRING:Q9VD51 PaxDb:Q9VD51
EnsemblMetazoa:FBtr0084174 EnsemblMetazoa:FBtr0084175 GeneID:42595
KEGG:dme:Dmel_CG6375 UCSC:CG6375-RA CTD:42595 FlyBase:FBgn0025140
GeneTree:ENSGT00680000100037 InParanoid:Q9VD51 OrthoDB:EOG4H189W
PhylomeDB:Q9VD51 ChiTaRS:pit GenomeRNAi:42595 NextBio:829597
Bgee:Q9VD51 GermOnline:CG6375 Uniprot:Q9VD51
Length = 680
Score = 167 (63.8 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 39/99 (39%), Positives = 60/99 (60%)
Query: 145 SFRLMK--LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPI 202
SF +K + E+ +RA++ G + T IQ + + L GRD++G A TGSGKTL F++P
Sbjct: 186 SFASLKGAVSEATLRAIKEMGFTEMTEIQSKSLTPLLKGRDLVGAAQTGSGKTLAFLIP- 244
Query: 203 LMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241
+E KL F+P G +II P+REL+ QT +++
Sbjct: 245 ---AVELINKLRFMPRNGTGVIIISPTRELSMQTFGVLK 280
Score = 127 (49.8 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 42/127 (33%), Positives = 66/127 (51%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD++G A TGSGKTL F++P +E KL F+P G +II P+REL+ QT +++
Sbjct: 225 RDLVGAAQTGSGKTLAFLIP----AVELINKLRFMPRNGTGVIIISPTRELSMQTFGVLK 280
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIR 127
A L +GG N+ ++ K G N + T R + + PD ++
Sbjct: 281 ELMAHHHHTYG--LVMGG--SNRQVESEKLGKGINILVATPGRLLDHLQNSPDFLY---- 332
Query: 128 RNLRILV 134
+NL+ L+
Sbjct: 333 KNLQCLI 339
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 164 (62.8 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 39/99 (39%), Positives = 55/99 (55%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+F + L L+ L GI PTPIQ Q IP L G+D++ A TG+GKT F LP++
Sbjct: 7 TFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243
+EQ + E L++ P+RELA+Q D +Q Y
Sbjct: 67 RFIEQPWQREANSKE-IRALVLVPTRELAQQVLDSLQAY 104
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 164 (62.8 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 39/99 (39%), Positives = 55/99 (55%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+F + L L+ L GI PTPIQ Q IP L G+D++ A TG+GKT F LP++
Sbjct: 7 TFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243
+EQ + E L++ P+RELA+Q D +Q Y
Sbjct: 67 RFIEQPWQREANSKE-IRALVLVPTRELAQQVLDSLQAY 104
>UNIPROTKB|Q5ZLN8 [details] [associations]
symbol:DDX55 "ATP-dependent RNA helicase DDX55"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
InterPro:IPR025313 Pfam:PF13959 HSSP:P26196 CTD:57696
HOGENOM:HOG000268803 HOVERGEN:HBG107796 KO:K14809 OrthoDB:EOG4WH8KN
EMBL:AJ719696 IPI:IPI00590534 RefSeq:NP_001006185.1
UniGene:Gga.42731 ProteinModelPortal:Q5ZLN8 STRING:Q5ZLN8
PRIDE:Q5ZLN8 GeneID:416820 KEGG:gga:416820 InParanoid:Q5ZLN8
NextBio:20820225 Uniprot:Q5ZLN8
Length = 591
Score = 166 (63.5 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 39/98 (39%), Positives = 57/98 (58%)
Query: 151 LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQE 210
L ++RAL+ G + TP+Q IP +S +D+ A TGSGKTL FV+PIL L +E
Sbjct: 16 LSPGVLRALQDLGFDRMTPVQSATIPLFMSNKDVAAEAVTGSGKTLAFVIPILEILLRRE 75
Query: 211 TKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALP 248
KL + G +II P+RELA Q +++ ++ P
Sbjct: 76 EKLKKMQ-VG--AIIITPTRELAIQIDEVLTHFTKHFP 110
Score = 128 (50.1 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 36/93 (38%), Positives = 51/93 (54%)
Query: 4 YRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTH 63
+ +++D+ A TGSGKTL FV+PIL L +E KL + G +II P+RELA Q
Sbjct: 43 FMSNKDVAAEAVTGSGKTLAFVIPILEILLRREEKLKKMQ-VG--AIIITPTRELAIQID 99
Query: 64 DIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIK 96
+++ ++ P L IGG N DV K
Sbjct: 100 EVLTHFTKHFP-KFSQILLIGG--RNPMEDVEK 129
>DICTYBASE|DDB_G0282741 [details] [associations]
symbol:ddx18 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
Length = 602
Score = 166 (63.5 bits), Expect = 5.6e-10, P = 5.6e-10
Identities = 38/94 (40%), Positives = 55/94 (58%)
Query: 146 FRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
F + + E+ +++E G KK TPIQ + I L G+D++G A TGSGKTL F++P
Sbjct: 121 FSNLPIEENTKKSIEEMGFKKMTPIQAKSILPLLEGKDLLGAARTGSGKTLAFLIP---- 176
Query: 206 CLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 239
+E K F P G +II P+RELA Q + +
Sbjct: 177 AIEVLVKSNFKPRNGTGVIIISPTRELALQIYGV 210
Score = 114 (45.2 bits), Expect = 0.00080, P = 0.00080
Identities = 41/135 (30%), Positives = 65/135 (48%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
+D++G A TGSGKTL F++P +E K F P G +II P+RELA Q + + +
Sbjct: 157 KDLLGAARTGSGKTLAFLIP----AIEVLVKSNFKPRNGTGVIIISPTRELALQIYGVAR 212
Query: 68 YYCAALPIPLRTC-LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDII 126
+ +T + IGG + ++KG+ N + T R +L I
Sbjct: 213 ---ELMKYHTQTHGIVIGGASKKPEEERLEKGV--NLLVATPGR----LLDHLQNTKGFI 263
Query: 127 RRNLRILV--EGDDV 139
+NL+ L+ E D +
Sbjct: 264 TKNLKCLIIDEADRI 278
>UNIPROTKB|F1MYC6 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0032880 "regulation of protein localization"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000237 "leptotene" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0032880 GO:GO:0007283 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 IPI:IPI00689085 UniGene:Bt.35994
OMA:RDAGESN GO:GO:0000237 EMBL:DAAA02050339 EMBL:DAAA02050337
EMBL:DAAA02050338 EMBL:JX437185 Ensembl:ENSBTAT00000011682
Uniprot:F1MYC6
Length = 729
Score = 167 (63.8 bits), Expect = 5.6e-10, P = 5.6e-10
Identities = 43/109 (39%), Positives = 57/109 (52%)
Query: 132 ILVE--GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAF 189
ILVE G D PPA +F L ++L + G K TP+Q IP GRD++ A
Sbjct: 276 ILVEVSGHDPPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQ 335
Query: 190 TGSGKTLVFVLPILMFCLEQE-TKLPFLPGEGPYGLIICPSRELARQTH 237
TGSGKT F+LPIL + T F + P +I+ P+REL Q +
Sbjct: 336 TGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIY 384
>UNIPROTKB|Q5W5U4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 EMBL:AF541971
IPI:IPI00689085 RefSeq:NP_001007820.1 UniGene:Bt.35994
ProteinModelPortal:Q5W5U4 SMR:Q5W5U4 STRING:Q5W5U4 PRIDE:Q5W5U4
GeneID:493725 KEGG:bta:493725 CTD:54514 InParanoid:Q5W5U4 KO:K13982
OrthoDB:EOG4W6NVF NextBio:20865468 GO:GO:0071547 Uniprot:Q5W5U4
Length = 729
Score = 167 (63.8 bits), Expect = 5.6e-10, P = 5.6e-10
Identities = 43/109 (39%), Positives = 57/109 (52%)
Query: 132 ILVE--GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAF 189
ILVE G D PPA +F L ++L + G K TP+Q IP GRD++ A
Sbjct: 276 ILVEVSGHDPPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQ 335
Query: 190 TGSGKTLVFVLPILMFCLEQE-TKLPFLPGEGPYGLIICPSRELARQTH 237
TGSGKT F+LPIL + T F + P +I+ P+REL Q +
Sbjct: 336 TGSGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIY 384
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 166 (63.5 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 41/99 (41%), Positives = 57/99 (57%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+FR + L E+L+RAL+ G +KPTPIQ I ++G+DI+G A TG+GKT F LP+L
Sbjct: 7 TFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLN 66
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243
Q T P L++ P+RELA Q + Y
Sbjct: 67 KVTSQTT---------PQILVLAPTRELAVQVAEAFSSY 96
>TAIR|locus:2152099 [details] [associations]
symbol:AT5G65900 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR
EMBL:AL021684 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268799 KO:K13179 EMBL:AB018108 EMBL:AY059930
EMBL:BT001188 EMBL:AJ012745 IPI:IPI00526354 PIR:T05883 PIR:T51352
RefSeq:NP_201391.1 UniGene:At.19658 UniGene:At.66704
ProteinModelPortal:Q9SB89 SMR:Q9SB89 PaxDb:Q9SB89 PRIDE:Q9SB89
EnsemblPlants:AT5G65900.1 GeneID:836719 KEGG:ath:AT5G65900
GeneFarm:951 TAIR:At5g65900 InParanoid:Q9SB89 OMA:HLENTNG
PhylomeDB:Q9SB89 ProtClustDB:CLSN2916378 Genevestigator:Q9SB89
GermOnline:AT5G65900 Uniprot:Q9SB89
Length = 633
Score = 166 (63.5 bits), Expect = 6.0e-10, P = 6.0e-10
Identities = 34/95 (35%), Positives = 57/95 (60%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+F + L ++ ++++ G + T IQ + IP + G D++G A TGSGKTL F++P
Sbjct: 155 TFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIP--- 211
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 239
+E ++ F P G L+ICP+RELA Q++ +
Sbjct: 212 -AVELLYRVKFTPRNGTGVLVICPTRELAIQSYGV 245
Score = 131 (51.2 bits), Expect = 9.8e-06, P = 9.8e-06
Identities = 43/134 (32%), Positives = 68/134 (50%)
Query: 9 DIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQY 68
D++G A TGSGKTL F++P +E ++ F P G L+ICP+RELA Q++ + +
Sbjct: 193 DVLGAARTGSGKTLAFLIP----AVELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAK- 247
Query: 69 YCAALPIPLRTC-LAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIR 127
L +T IGG +++ KG+ N + T R +L + + I
Sbjct: 248 --ELLKYHSQTVGKVIGGEKRKTEAEILAKGV--NLLVATPGR----LLDHLENTNGFIF 299
Query: 128 RNLRILV--EGDDV 139
+NL+ LV E D +
Sbjct: 300 KNLKFLVMDEADRI 313
>UNIPROTKB|Q47Z59 [details] [associations]
symbol:CPS_3215 "Putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0042254
"ribosome biogenesis" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 164 (62.8 bits), Expect = 6.0e-10, P = 6.0e-10
Identities = 37/95 (38%), Positives = 57/95 (60%)
Query: 151 LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQE 210
L +L+ +E G +PT IQ Q IPAA++G D+I + TGSGKTL F++P L++
Sbjct: 8 LDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIP----ALQRL 63
Query: 211 TKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCA 245
+K L P +I+ P+RELA+Q ++ + A
Sbjct: 64 SKNRALSKRDPRVVILTPTRELAKQVFSQLRLFTA 98
>TIGR_CMR|CPS_3215 [details] [associations]
symbol:CPS_3215 "putative ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_269911.1 ProteinModelPortal:Q47Z59
STRING:Q47Z59 GeneID:3520324 KEGG:cps:CPS_3215 PATRIC:21469413
OMA:PKFIVAT ProtClustDB:CLSK869483
BioCyc:CPSY167879:GI48-3264-MONOMER Uniprot:Q47Z59
Length = 448
Score = 164 (62.8 bits), Expect = 6.0e-10, P = 6.0e-10
Identities = 37/95 (38%), Positives = 57/95 (60%)
Query: 151 LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQE 210
L +L+ +E G +PT IQ Q IPAA++G D+I + TGSGKTL F++P L++
Sbjct: 8 LDSALMSTIEHMGFNEPTQIQQQAIPAAMAGHDLIASSKTGSGKTLAFIIP----ALQRL 63
Query: 211 TKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCA 245
+K L P +I+ P+RELA+Q ++ + A
Sbjct: 64 SKNRALSKRDPRVVILTPTRELAKQVFSQLRLFTA 98
WARNING: HSPs involving 471 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.326 0.145 0.452 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 252 252 0.00082 114 3 11 22 0.39 33
32 0.47 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 721
No. of states in DFA: 604 (64 KB)
Total size of DFA: 175 KB (2099 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.70u 0.11s 20.81t Elapsed: 00:00:01
Total cpu time: 20.73u 0.11s 20.84t Elapsed: 00:00:01
Start: Thu Aug 15 13:30:45 2013 End: Thu Aug 15 13:30:46 2013
WARNINGS ISSUED: 2