RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7786
(252 letters)
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding,
hydrolase, nucleotide- RNA-binding, methylation, mRNA
processing, mRNA S nucleus; HET: ADP; 2.60A {Homo
sapiens}
Length = 242
Score = 156 bits (397), Expect = 2e-47
Identities = 46/133 (34%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 117 SLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIP 176
Q + RR+ I V G + P +F P +++ + + +PT IQ QG P
Sbjct: 2 MRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWP 61
Query: 177 AALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQT 236
ALSG D++G+A TGSGKTL ++LP ++ Q G+GP L++ P+RELA+Q
Sbjct: 62 VALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQP---FLERGDGPICLVLAPTRELAQQV 118
Query: 237 HDIIQYYCAALPI 249
+ YC A +
Sbjct: 119 QQVAAEYCRACRL 131
Score = 100 bits (251), Expect = 8e-26
Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
D++G+A TGSGKTL ++LP ++ Q G+GP L++ P+RELA+Q +
Sbjct: 67 LDMVGVAQTGSGKTLSYLLPAIVHINHQP---FLERGDGPICLVLAPTRELAQQVQQVAA 123
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
YC A + ++ GG P + +++G++
Sbjct: 124 EYCRACRL--KSTCIYGGAPKGPQIRDLERGVE 154
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC,
structural GE consortium, hydrolase; HET: AMP; 2.20A
{Homo sapiens}
Length = 417
Score = 153 bits (390), Expect = 1e-44
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Query: 132 ILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTG 191
+ G++ PP SF +++ E ++ +E +PTP+Q IP RD++ A TG
Sbjct: 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 62
Query: 192 SGKTLVFVLPILMFCLEQETKLPFLP----------GEGPYGLIICPSRELARQTHDIIQ 241
SGKT F+LPIL + P L++ P+RELA Q ++ +
Sbjct: 63 SGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEAR 122
Query: 242 YYCAALPI 249
+ +
Sbjct: 123 KFSYRSRV 130
Score = 104 bits (263), Expect = 2e-26
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 12/101 (11%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLP----------GEGPYGLIICPSRE 57
RD++ A TGSGKT F+LPIL + P L++ P+RE
Sbjct: 53 RDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRE 112
Query: 58 LARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKG 98
LA Q ++ + + + R C+ GG + Q + +++G
Sbjct: 113 LAVQIYEEARKFSYRSRV--RPCVVYGGADIGQQIRDLERG 151
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex,
ATPase, riken structural genomics/proteomics initiative,
RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Length = 434
Score = 150 bits (382), Expect = 3e-43
Identities = 44/123 (35%), Positives = 60/123 (48%), Gaps = 3/123 (2%)
Query: 127 RRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIG 186
N+ + V G DVP F L + ++ + G K PTPIQ IP SGRD++
Sbjct: 39 YNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMA 98
Query: 187 IAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAA 246
A TGSGKT F+LPIL LE L P +I+ P+RELA Q + + +
Sbjct: 99 CAQTGSGKTAAFLLPILSKLLEDP---HELELGRPQVVIVSPTRELAIQIFNEARKFAFE 155
Query: 247 LPI 249
+
Sbjct: 156 SYL 158
Score = 103 bits (259), Expect = 1e-25
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD++ A TGSGKT F+LPIL LE L P +I+ P+RELA Q + +
Sbjct: 94 RDLMACAQTGSGKTAAFLLPILSKLLEDP---HELELGRPQVVIVSPTRELAIQIFNEAR 150
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKG 98
+ + + + GG + I +G
Sbjct: 151 KFAFESYL--KIGIVYGGTSFRHQNECITRG 179
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural
genomics, structural GEN consortium, SGC, rRNA,
ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Length = 245
Score = 136 bits (344), Expect = 2e-39
Identities = 45/128 (35%), Positives = 65/128 (50%), Gaps = 11/128 (8%)
Query: 126 IRRNLRILVEGDDVPPACCSF----RLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSG 181
+R +I V+G D+P +F + K+ L++ + G + PTPIQ+Q IP L G
Sbjct: 7 LRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHG 66
Query: 182 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241
R+++ A TGSGKTL F +PILM + +G LII P+RELA Q H +
Sbjct: 67 RELLASAPTGSGKTLAFSIPILMQLKQP-------ANKGFRALIISPTRELASQIHRELI 119
Query: 242 YYCAALPI 249
Sbjct: 120 KISEGTGF 127
Score = 84.9 bits (211), Expect = 6e-20
Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 10/92 (10%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
R+++ A TGSGKTL F +PILM + +G LII P+RELA Q H +
Sbjct: 67 RELLASAPTGSGKTLAFSIPILMQLKQP-------ANKGFRALIISPTRELASQIHRELI 119
Query: 68 YYCAALPIPLRTCLAIGGVP-MNQSLDVIKKG 98
R + + K
Sbjct: 120 KISEGT--GFRIHMIHKAAVAAKKFGPKSSKK 149
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX,
structural genomics, structural genomi consortium, SGC,
ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Length = 228
Score = 128 bits (323), Expect = 2e-36
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 134 VEGDDVPPACCSFR-LMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGS 192
E +P C F+ + L++++ GI KPTPIQ Q P L G D+I +A TG+
Sbjct: 9 GEKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGT 68
Query: 193 GKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAA 246
GKTL +++P + Q GP L++ P+RELA Y
Sbjct: 69 GKTLSYLMPGFIHLDSQPISRE--QRNGPGMLVLTPTRELALHVEAECSKYSYK 120
Score = 89.2 bits (222), Expect = 9e-22
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
D+I +A TG+GKTL +++P + Q GP L++ P+RELA
Sbjct: 58 IDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE--QRNGPGMLVLTPTRELALHVEAECS 115
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
Y L++ GG N ++ I KG+
Sbjct: 116 KYSYK---GLKSICIYGGRNRNGQIEDISKGVD 145
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA,
N project on protein structural and functional analyses;
2.40A {Dugesia japonica} SCOP: c.37.1.19
Length = 253
Score = 124 bits (315), Expect = 4e-35
Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 129 NLRILVEGDD--VPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIG 186
++ + V G D +F +KL ++ + ++PTPIQ IPA L RDI+
Sbjct: 6 SIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMA 65
Query: 187 IAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGLIICPSRELARQTHDIIQYYCA 245
A TGSGKT F++PI+ + Q+ P LI+ P+RELA Q Q +
Sbjct: 66 CAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSL 125
Query: 246 ALPI 249
P+
Sbjct: 126 NTPL 129
Score = 87.2 bits (217), Expect = 8e-21
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFL-PGEGPYGLIICPSRELARQTHDII 66
RDI+ A TGSGKT F++PI+ + Q+ P LI+ P+RELA Q
Sbjct: 61 RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120
Query: 67 QYYCAALPIPLRTCLAIGGVPMNQSLDVIKKG 98
Q + P+ R+C+ GG + + ++ G
Sbjct: 121 QKFSLNTPL--RSCVVYGGADTHSQIREVQMG 150
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural
genomics, structural genomic consortium, SGC, hydrolase;
HET: ADP; 2.15A {Homo sapiens}
Length = 236
Score = 115 bits (289), Expect = 2e-31
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 4/105 (3%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
F L + ++ L+ + T IQ Q I AL G+D++G A TGSGKTL F++P+
Sbjct: 26 RFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPV-- 83
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPI 249
LE +L + +G LII P+RELA QT ++++
Sbjct: 84 --LEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDF 126
Score = 85.4 bits (212), Expect = 3e-20
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
+D++G A TGSGKTL F++P+ LE +L + +G LII P+RELA QT ++++
Sbjct: 63 KDVLGAAKTGSGKTLAFLVPV----LEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLR 118
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKK 97
L IGG + + I
Sbjct: 119 KVGKN--HDFSAGLIIGGKDLKHEAERINN 146
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics,
structural genomics consort ATP-binding, hydrolase,
nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Length = 262
Score = 114 bits (287), Expect = 7e-31
Identities = 36/100 (36%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 150 KLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQ 209
+ E+ ++A++ G T IQ + I L GRD++ A TGSGKTL F++P +E
Sbjct: 60 LVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPA----VEL 115
Query: 210 ETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPI 249
KL F+P G LI+ P+RELA QT +++
Sbjct: 116 IVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVH 155
Score = 87.0 bits (216), Expect = 1e-20
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD++ A TGSGKTL F++P +E KL F+P G LI+ P+RELA QT +++
Sbjct: 92 RDLLAAAKTGSGKTLAFLIPA----VELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLK 147
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGI 99
L +GG + + GI
Sbjct: 148 ELMTH--HVHTYGLIMGGSNRSAEAQKLGNGI 177
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural
genomics, structural GEN consortium, SGC, ATP-binding,
hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Length = 249
Score = 112 bits (282), Expect = 3e-30
Identities = 40/105 (38%), Positives = 60/105 (57%), Gaps = 8/105 (7%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+F+ + + + L A + G KPT IQ++ IP AL GRDIIG+A TGSGKT F LPIL
Sbjct: 44 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL- 102
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPI 249
L P + + L++ P+RELA Q + + +++ +
Sbjct: 103 ------NALLETP-QRLFALVLTPTRELAFQISEQFEALGSSIGV 140
Score = 80.0 bits (198), Expect = 3e-18
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RDIIG+A TGSGKT F LPIL L P + + L++ P+RELA Q + +
Sbjct: 81 RDIIGLAETGSGKTGAFALPIL-------NALLETP-QRLFALVLTPTRELAFQISEQFE 132
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKG 98
+ I +++ + +GG+ + K
Sbjct: 133 ALGS--SIGVQSAVIVGGIDSMSQSLALAKK 161
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic
resolution, AMP complex, ribosome biogenesis,
thermophilic, hydrolase; HET: AMP; 1.20A {Thermus
thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A*
3mwl_A* 3nbf_A* 3nej_A
Length = 207
Score = 101 bits (253), Expect = 2e-26
Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
F+ L ++ AL +G+ PTPIQ +P AL G+D+IG A TG+GKTL F LPI
Sbjct: 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA- 60
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243
+ G P L++ P+RELA Q +
Sbjct: 61 ----ERLAPSQERGRKPRALVLTPTRELALQVASELTAV 95
Score = 70.6 bits (174), Expect = 4e-15
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
+D+IG A TG+GKTL F LPI + G P L++ P+RELA Q +
Sbjct: 39 KDLIGQARTGTGKTLAFALPIA-----ERLAPSQERGRKPRALVLTPTRELALQVASELT 93
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
L+ GG + + + +G
Sbjct: 94 AVAPH----LKVVAVYGGTGYGKQKEALLRGAD 122
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA
helicase, DEAD-BOX, ATP-binding, HE hydrolase,
mitochondrion; HET: ANP; 1.90A {Saccharomyces
cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A*
Length = 563
Score = 105 bits (263), Expect = 5e-26
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 6/99 (6%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSG--RDIIGIAFTGSGKTLVFVLPI 202
L + + +A+ TP+Q + I LS D+I A TG+GKT F++PI
Sbjct: 73 LLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPI 132
Query: 203 LMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 241
+ F +I+ P+R+LA Q ++
Sbjct: 133 ----FQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVK 167
Score = 78.7 bits (194), Expect = 6e-17
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
D+I A TG+GKT F++PI + F +I+ P+R+LA Q ++
Sbjct: 112 HDVIARAKTGTGKTFAFLIPI----FQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVK 167
Query: 68 YYCAALP--IPLRTCLAIGGVPMNQSLDVIKKG 98
+GG +++ + K
Sbjct: 168 KIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKL 200
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA
dependent ATPase, RNA helicase; HET: ANP; 1.91A
{Saccharomyces cerevisiae S288C}
Length = 579
Score = 104 bits (262), Expect = 6e-26
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 6/102 (5%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSG--RDIIGIAFTGSGKTLVFVLPI 202
L + + +A+ TP+Q + I LS D+I A TG+GKT F++PI
Sbjct: 22 LLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPI 81
Query: 203 LMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244
+ F +I+ P+R+LA Q ++
Sbjct: 82 ----FQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIH 119
Score = 78.7 bits (194), Expect = 7e-17
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 7/96 (7%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
D+I A TG+GKT F++PI + F +I+ P+R+LA Q ++
Sbjct: 61 HDVIARAKTGTGKTFAFLIPI----FQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVK 116
Query: 68 YYCAALP--IPLRTCLAIGGVPMNQSLDVIKK-GIQ 100
+GG +++ + K
Sbjct: 117 KIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPN 152
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation,
rRNA processing, mRNA splicing, mRNA transport; HET:
ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB:
2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B
2zu6_A
Length = 410
Score = 103 bits (258), Expect = 1e-25
Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 8/99 (8%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+F M L E L+R + A G +KP+ IQ + I + GRD+I + +G+GKT F + +L
Sbjct: 38 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 97
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243
CL+ + + LI+ P+RELA Q +
Sbjct: 98 -CLDIQVR-------ETQALILAPTRELAVQIQKGLLAL 128
Score = 65.7 bits (161), Expect = 1e-12
Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 33/139 (23%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RD+I + +G+GKT F + +L CL+ + + LI+ P+RELA Q +
Sbjct: 75 RDVIAQSQSGTGKTATFSISVLQ-CLDIQVR-------ETQALILAPTRELAVQIQKGLL 126
Query: 68 YYCAALPIPLRTCLAI-GGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDII 126
+ + C A GG + + + + G + P +V D+I
Sbjct: 127 ALGDYMNV---QCHACIGGTNVGEDIRKLDYGQH-------------VVAGTPGRVFDMI 170
Query: 127 RR------NLRILV--EGD 137
RR +++LV E D
Sbjct: 171 RRRSLRTRAIKMLVLDEAD 189
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Length = 230
Score = 99.2 bits (248), Expect = 1e-25
Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 136 GDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKT 195
GD + F + L ++ L A G ++P+P+Q++ IP G D+I A +G+GKT
Sbjct: 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKT 75
Query: 196 LVFVLPILMFCLEQ-ETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALP 248
VF L+ + LI+ P+RE+A Q H +I +
Sbjct: 76 CVFSTIA----LDSLVLENL-----STQILILAPTREIAVQIHSVITAIGIKME 120
Score = 57.6 bits (140), Expect = 3e-10
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 11/92 (11%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQ-ETKLPFLPGEGPYGLIICPSRELARQTHDII 66
D+I A +G+GKT VF L+ + LI+ P+RE+A Q H +I
Sbjct: 62 LDLIVQAKSGTGKTCVFSTIA----LDSLVLENL-----STQILILAPTREIAVQIHSVI 112
Query: 67 QYYCAALPIPLRTCLAIGGVPMNQSLDVIKKG 98
+ L + IGG P++Q +KK
Sbjct: 113 TAIGIKME-GLECHVFIGGTPLSQDKTRLKKC 143
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding,
RNA binding protein; 2.10A {Saccharomyces cerevisiae}
SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Length = 400
Score = 102 bits (257), Expect = 2e-25
Identities = 34/99 (34%), Positives = 53/99 (53%), Gaps = 8/99 (8%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+F L L+ + G +KP+PIQ + IP A++GRDI+ A G+GKT FV+P L
Sbjct: 22 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE 81
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243
++ + LI+ P+RELA QT +++
Sbjct: 82 -KVKPKLN-------KIQALIMVPTRELALQTSQVVRTL 112
Score = 65.7 bits (161), Expect = 1e-12
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
RDI+ A G+GKT FV+P L ++ + LI+ P+RELA QT +++
Sbjct: 59 RDILARAKNGTGKTAAFVIPTLE-KVKPKLN-------KIQALIMVPTRELALQTSQVVR 110
Query: 68 YYCAALPIPLRTCLAI-GGVPMNQSLDVIKKGIQ 100
I +C+ GG + + + + +
Sbjct: 111 TLGKHCGI---SCMVTTGGTNLRDDILRLNETVH 141
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus
stearothermophilus} SCOP: c.37.1.19
Length = 219
Score = 98.8 bits (247), Expect = 2e-25
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
F ++ A++ KPT IQ + IP AL G ++G + TG+GKT ++LPI+
Sbjct: 5 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIME 64
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALP 248
++ E +I P+RELA Q + P
Sbjct: 65 -KIKPERA-------EVQAVITAPTRELATQIYHETLKITKFCP 100
Score = 65.7 bits (161), Expect = 4e-13
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
++G + TG+GKT ++LPI+ ++ E +I P+RELA Q +
Sbjct: 42 ESMVGQSQTGTGKTHAYLLPIME-KIKPERA-------EVQAVITAPTRELATQIYHETL 93
Query: 68 YYCAALPIPLR-TCLAI-GGVPMNQSLDVIKKGIQ 100
P + GG ++L+ +
Sbjct: 94 KITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPH 128
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein,
translation; 2.50A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 2vso_A* 2vsx_A*
Length = 394
Score = 101 bits (253), Expect = 4e-25
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
F M+L E+L+R + G ++P+ IQ + I + G D++ A +G+GKT F + L
Sbjct: 22 KFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 81
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243
++ K P L++ P+RELA Q ++
Sbjct: 82 -RIDTSVK-------APQALMLAPTRELALQIQKVVMAL 112
Score = 59.5 bits (145), Expect = 1e-10
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
D++ A +G+GKT F + L ++ K P L++ P+RELA Q ++
Sbjct: 59 HDVLAQAQSGTGKTGTFSIAALQ-RIDTSVK-------APQALMLAPTRELALQIQKVVM 110
Query: 68 YYCAALPIPLRTCLAI-GGVPMNQSLDVIKKG 98
+ I A GG + + ++
Sbjct: 111 ALAFHMDI---KVHACIGGTSFVEDAEGLRDA 139
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis,
cell cycle, nucleus, phosph RNA-binding, ATP-binding,
helicase, hydrolase; 3.50A {Homo sapiens}
Length = 414
Score = 101 bits (253), Expect = 5e-25
Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 8/99 (8%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
SF M L ESL+R + A G +KP+ IQ + I + G D+I A +G+GKT F + IL
Sbjct: 41 SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQ 100
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243
+E + K L++ P+RELA+Q ++
Sbjct: 101 -QIELDLK-------ATQALVLAPTRELAQQIQKVVMAL 131
Score = 59.1 bits (144), Expect = 2e-10
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 32/139 (23%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
D+I A +G+GKT F + IL +E + K L++ P+RELA+Q ++
Sbjct: 78 YDVIAQAQSGTGKTATFAISILQ-QIELDLK-------ATQALVLAPTRELAQQIQKVVM 129
Query: 68 YYCAALPIPLRTCLAI-GGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDII 126
+ +C A GG + + ++ AP I+ P +V D++
Sbjct: 130 ALGDYMGA---SCHACIGGTNVRAEVQKLQM------------EAPHIIVGTPGRVFDML 174
Query: 127 RR------NLRILV--EGD 137
R +++ V E D
Sbjct: 175 NRRYLSPKYIKMFVLDEAD 193
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family,
gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 1qva_A
Length = 224
Score = 97.2 bits (243), Expect = 8e-25
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
F M+L E+L+R + G ++P+ IQ + I + G D++ A +G+GKT F + L
Sbjct: 15 KFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 74
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243
++ K P L++ P+RELA Q ++
Sbjct: 75 -RIDTSVK-------APQALMLAPTRELALQIQKVVMAL 105
Score = 57.6 bits (140), Expect = 3e-10
Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 32/138 (23%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
D++ A +G+GKT F + L ++ K P L++ P+RELA Q ++
Sbjct: 52 HDVLAQAQSGTGKTGTFSIAALQ-RIDTSVK-------APQALMLAPTRELALQIQKVVM 103
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIR 127
+ I A G G + + + R + ++ P +V D I+
Sbjct: 104 ALAFHMDI---KVHACIG------------GTSFVEDAE-GLRDAQIVVGTPGRVFDNIQ 147
Query: 128 R------NLRILV--EGD 137
R +++ + E D
Sbjct: 148 RRRFRTDKIKMFILDEAD 165
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX,
structural genomics, helic binding, HOST-virus
interaction, hydrolase; 1.85A {Homo sapiens} PDB:
2g9n_A*
Length = 237
Score = 97.7 bits (244), Expect = 8e-25
Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 8/99 (8%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+F M L ESL+R + A G +KP+ IQ + I + G D+I A +G+GKT F + IL
Sbjct: 31 NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 90
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243
LE E K L++ P+RELA+Q +I
Sbjct: 91 -QLEIEFK-------ETQALVLAPTRELAQQIQKVILAL 121
Score = 59.5 bits (145), Expect = 6e-11
Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 30/138 (21%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
D+I A +G+GKT F + IL LE E K L++ P+RELA+Q +I
Sbjct: 68 YDVIAQAQSGTGKTATFAISILQ-QLEIEFK-------ETQALVLAPTRELAQQIQKVIL 119
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIR 127
+ C IGG + + ++ AP ++ P +V D++
Sbjct: 120 ALGDYMGATCHAC--IGGTNVRNEMQKLQA------------EAPHIVVGTPGRVFDMLN 165
Query: 128 R------NLRILV--EGD 137
R +++ V E D
Sbjct: 166 RRYLSPKWIKMFVLDEAD 183
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding
protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Length = 206
Score = 96.8 bits (242), Expect = 8e-25
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
F L L+ + G +KP+PIQ + IP ALSGRDI+ A G+GK+ +++P+
Sbjct: 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPL-- 61
Query: 205 FCLEQ-ETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243
LE+ + K ++I P+RELA Q I
Sbjct: 62 --LERLDLKKD-----NIQAMVIVPTRELALQVSQICIQV 94
Score = 58.7 bits (143), Expect = 9e-11
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 11/94 (11%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQ-ETKLPFLPGEGPYGLIICPSRELARQTHDII 66
RDI+ A G+GK+ +++P+ LE+ + K ++I P+RELA Q I
Sbjct: 41 RDILARAKNGTGKSGAYLIPL----LERLDLKKD-----NIQAMVIVPTRELALQVSQIC 91
Query: 67 QYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ + GG + + + +
Sbjct: 92 IQVSKHMG-GAKVMATTGGTNLRDDIMRLDDTVH 124
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling,
archaea, isomeras; 2.35A {Thermotoga maritima} PDB:
3p4y_A 3p4x_A*
Length = 414
Score = 99.0 bits (247), Expect = 4e-24
Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 11/98 (11%)
Query: 147 RLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFC 206
E + K K T Q + G+ +A TG GKT ++ L
Sbjct: 2 EFWNEYEDFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTAL--- 58
Query: 207 LEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244
+L +G ++ P+ L +QT + +Q
Sbjct: 59 --------WLARKGKKSALVFPTVTLVKQTLERLQKLA 88
Score = 70.5 bits (173), Expect = 3e-14
Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 14/98 (14%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
+ +A TG GKT ++ L +L +G ++ P+ L +QT + +Q
Sbjct: 37 KSFTMVAPTGVGKTTFGMMTAL-----------WLARKGKKSALVFPTVTLVKQTLERLQ 85
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPI 105
++ + + K + + I
Sbjct: 86 KLADE---KVKIFGFYSSMKKEEKEKFEKSFEEDDYHI 120
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD;
ATP-binding, hydrolase, nucleotide-binding, RNA binding
protein, structural genomics; 1.90A {Sulfolobus
tokodaii}
Length = 337
Score = 97.6 bits (244), Expect = 5e-24
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 14/99 (14%)
Query: 151 LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQE 210
+ E + +A+ G K T +Q + IP L G++++ A TGSGKT + +PIL
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILE------ 54
Query: 211 TKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPI 249
G L++ P+REL RQ I+ +
Sbjct: 55 --------LGMKSLVVTPTRELTRQVASHIRDIGRYMDT 85
Score = 61.4 bits (150), Expect = 3e-11
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 18/92 (19%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
++++ A TGSGKT + +PIL G L++ P+REL RQ I+
Sbjct: 32 KNVVVRAKTGSGKTAAYAIPILE--------------LGMKSLVVTPTRELTRQVASHIR 77
Query: 68 YYCAALPIPLRTCLAI-GGVPMNQSLDVIKKG 98
+ + GG+P ++ ++
Sbjct: 78 DIGRYMDT---KVAEVYGGMPYKAQINRVRNA 106
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA
processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP:
c.37.1.19
Length = 220
Score = 94.2 bits (235), Expect = 1e-23
Identities = 34/104 (32%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
FR L L+RA+ G + P+ +Q + IP A+ G D++ A +G GKT VFVL L
Sbjct: 15 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL- 73
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALP 248
+L + G+ L++C +RELA Q + + +P
Sbjct: 74 ------QQLEPVTGQ-VSVLVMCHTRELAFQISKEYERFSKYMP 110
Score = 66.5 bits (163), Expect = 2e-13
Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 29/138 (21%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
D++ A +G GKT VFVL L +L + G+ L++C +RELA Q +
Sbjct: 52 MDVLCQAKSGMGKTAVFVLATL-------QQLEPVTGQ-VSVLVMCHTRELAFQISKEYE 103
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIR 127
+ +P ++ + GG+ + + +V+KK P ++ P ++ + R
Sbjct: 104 RFSKYMP-NVKVAVFFGGLSIKKDEEVLKKN------------CPHIVVGTPGRILALAR 150
Query: 128 R------NLRILV--EGD 137
+++ + E D
Sbjct: 151 NKSLNLKHIKHFILDECD 168
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein,
ATPase, RNA binding protein; 3.00A {Methanocaldococcus
jannaschii} SCOP: c.37.1.19 c.37.1.19
Length = 367
Score = 96.8 bits (242), Expect = 1e-23
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 10/100 (10%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGR-DIIGIAFTGSGKTLVFVLPIL 203
+F + L ++++ A+ KG +KPT IQ++ IP L+ +I+ A TGSGKT F +P++
Sbjct: 7 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66
Query: 204 MFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243
+ G +I+ P+RELA Q D I+
Sbjct: 67 -------ELVN--ENNGIEAIILTPTRELAIQVADEIESL 97
Score = 59.5 bits (145), Expect = 2e-10
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 13/92 (14%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
+I+ A TGSGKT F +P++ + G +I+ P+RELA Q D I+
Sbjct: 45 YNIVAQARTGSGKTASFAIPLI-------ELVN--ENNGIEAIILTPTRELAIQVADEIE 95
Query: 68 YYCAALPIPLRTCLAI-GGVPMNQSLDVIKKG 98
+ I GG + + +K
Sbjct: 96 SLKGNKNL---KIAKIYGGKAIYPQIKALKNA 124
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase,
mRNA-export, nuclear pore, hydrolase-RNA complex; HET:
ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A*
3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A
3pev_A* 3peu_A*
Length = 395
Score = 96.1 bits (240), Expect = 3e-23
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSG--RDIIGIAFTGSGKTLVFVLPI 202
SF + L L++ + A +KP+ IQ + +P L R++I + +G+GKT F L +
Sbjct: 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65
Query: 203 LMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243
L + E P + + PSRELARQT +++Q
Sbjct: 66 LT-RVNPEDA-------SPQAICLAPSRELARQTLEVVQEM 98
Score = 61.0 bits (149), Expect = 4e-11
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
R++I + +G+GKT F L +L + E P + + PSRELARQT +++Q
Sbjct: 45 RNMIAQSQSGTGKTAAFSLTMLT-RVNPEDA-------SPQAICLAPSRELARQTLEVVQ 96
Query: 68 YYCAALPIPLRTCLAIGG 85
I + L +
Sbjct: 97 EMGKFTKI--TSQLIVPD 112
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene
regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19
c.37.1.19 PDB: 1xtj_A* 1xtk_A
Length = 391
Score = 95.0 bits (237), Expect = 6e-23
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
FR L L+RA+ G + P+ +Q + IP A+ G D++ A +G GKT VFVL
Sbjct: 9 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT-- 66
Query: 205 FCLEQ-ETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALP 248
L+Q E L++C +RELA Q + + +P
Sbjct: 67 --LQQLEPVTG-----QVSVLVMCHTRELAFQISKEYERFSKYMP 104
Score = 64.9 bits (159), Expect = 2e-12
Identities = 31/139 (22%), Positives = 58/139 (41%), Gaps = 31/139 (22%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQ-ETKLPFLPGEGPYGLIICPSRELARQTHDII 66
D++ A +G GKT VFVL L+Q E L++C +RELA Q
Sbjct: 46 MDVLCQAKSGMGKTAVFVLAT----LQQLEPVTG-----QVSVLVMCHTRELAFQISKEY 96
Query: 67 QYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDII 126
+ + +P ++ + GG+ + + +V+KK P ++ P ++ +
Sbjct: 97 ERFSKYMP-NVKVAVFFGGLSIKKDEEVLKKN------------CPHIVVGTPGRILALA 143
Query: 127 RR------NLRILV--EGD 137
R +++ + E D
Sbjct: 144 RNKSLNLKHIKHFILDECD 162
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 3.19A {Homo
sapiens}
Length = 479
Score = 95.1 bits (237), Expect = 1e-22
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 12/102 (11%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSG--RDIIGIAFTGSGKTLVFVLPI 202
SF ++L L++ + A G +P+ IQ +P L+ +++I + +G+GKT FVL +
Sbjct: 93 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 152
Query: 203 LMFCLEQ-ETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243
L Q E + P L + P+ ELA QT +I+
Sbjct: 153 ----LSQVEPANKY-----PQCLCLSPTYELALQTGKVIEQM 185
Score = 64.6 bits (158), Expect = 4e-12
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 14/94 (14%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQ-ETKLPFLPGEGPYGLIICPSRELARQTHDII 66
+++I + +G+GKT FVL + L Q E + P L + P+ ELA QT +I
Sbjct: 132 QNLIAQSQSGTGKTAAFVLAM----LSQVEPANKY-----PQCLCLSPTYELALQTGKVI 182
Query: 67 QYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ P L+ A+ G + + K Q
Sbjct: 183 EQMGKFYPE-LKLAYAVRGNKLERGQ---KISEQ 212
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA
dependent ATPase, mRNA export, nucleocytoplasmic
transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens}
PDB: 3ews_A* 3g0h_A* 3fhc_B
Length = 412
Score = 94.5 bits (236), Expect = 1e-22
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 12/102 (11%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSG--RDIIGIAFTGSGKTLVFVLPI 202
SF ++L L++ + A G +P+ IQ +P L+ +++I + +G+GKT FVL +
Sbjct: 26 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 85
Query: 203 LMFCLEQ-ETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243
L Q E + P L + P+ ELA QT +I+
Sbjct: 86 ----LSQVEPANKY-----PQCLCLSPTYELALQTGKVIEQM 118
Score = 63.0 bits (154), Expect = 1e-11
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 14/94 (14%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQ-ETKLPFLPGEGPYGLIICPSRELARQTHDII 66
+++I + +G+GKT FVL + L Q E + P L + P+ ELA QT +I
Sbjct: 65 QNLIAQSQSGTGKTAAFVLAM----LSQVEPANKY-----PQCLCLSPTYELALQTGKVI 115
Query: 67 QYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
+ P L+ A+ G + + K Q
Sbjct: 116 EQMGKFYPE-LKLAYAVRGNKLERGQ---KISEQ 145
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 2.51A {Homo
sapiens}
Length = 300
Score = 92.5 bits (230), Expect = 2e-22
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSG--RDIIGIAFTGSGKTLVFVLPI 202
SF ++L L++ + A G +P+ IQ +P L+ +++I + +G+GKT FVL +
Sbjct: 93 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 152
Query: 203 LMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243
L +E K P L + P+ ELA QT +I+
Sbjct: 153 LS-QVEPANK-------YPQCLCLSPTYELALQTGKVIEQM 185
Score = 64.0 bits (156), Expect = 4e-12
Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
+++I + +G+GKT FVL +L +E K P L + P+ ELA QT +I+
Sbjct: 132 QNLIAQSQSGTGKTAAFVLAMLS-QVEPANK-------YPQCLCLSPTYELALQTGKVIE 183
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQ 100
P L+ A+ G + + K Q
Sbjct: 184 QMGKFYPE-LKLAYAVRGNKLERGQ---KISEQ 212
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 76.1 bits (188), Expect = 4e-16
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 170 IQVQGIPAALSG--RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIIC 227
IQ + +P LS R++IG + +G+GKT F L +L ++ P + +
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLS-RVDASVP-------KPQAICLA 196
Query: 228 PSRELARQTHDIIQYY 243
PSRELARQ D++
Sbjct: 197 PSRELARQIMDVVTEM 212
Score = 67.2 bits (165), Expect = 5e-13
Identities = 31/138 (22%), Positives = 54/138 (39%), Gaps = 35/138 (25%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
R++IG + +G+GKT F L +L ++ P + + PSRELARQ D++
Sbjct: 159 RNMIGQSQSGTGKTAAFALTMLS-RVDASVP-------KPQAICLAPSRELARQIMDVVT 210
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIR 127
+ +T I K Q ++ P V D+++
Sbjct: 211 EMGKYTEV--KTAFGIKDSVPKG----AKIDAQ-------------IVIGTPGTVMDLMK 251
Query: 128 R------NLRILV--EGD 137
R ++++ V E D
Sbjct: 252 RRQLDARDIKVFVLDEAD 269
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin
nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Length = 715
Score = 48.6 bits (116), Expect = 7e-07
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 149 MKLPESLVRALEAKGIKKPTPIQVQGIPAAL-SGRDIIGIAFTGSGKTLVFVLPILMFCL 207
+KLP +++ ++ +GIKK P Q + + L G ++ + TGSGKTL+ + I+ F L
Sbjct: 13 LKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLL 72
Query: 208 EQETK 212
+ K
Sbjct: 73 KNGGK 77
Score = 29.7 bits (67), Expect = 0.89
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 16 TGSGKTLVFVLPILMFCLEQETK 38
TGSGKTL+ + I+ F L+ K
Sbjct: 55 TGSGKTLIAEMGIISFLLKNGGK 77
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal
helicase, DNA repair,, DNA binding protein/DNA complex;
3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2
c.37.1.19 c.37.1.19 PDB: 2p6u_A
Length = 702
Score = 46.3 bits (110), Expect = 5e-06
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 151 LPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPIL 203
+ V L+ +GI++ P Q + + SG++++ T +GKTL+ + ++
Sbjct: 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMV 62
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding,
hydrolase, nucleotide- binding; 2.00A {Pyrococcus
furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Length = 720
Score = 45.6 bits (108), Expect = 7e-06
Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 148 LMKLPESLVRALEAKGIKKPTPIQVQGIPAAL-SGRDIIGIAFTGSGKTLVFVLPILMFC 206
+++ E + L+ +GI+ P Q + + + + G++ + T SGKTL+ + ++
Sbjct: 5 ELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRI 64
Query: 207 LEQETK 212
L Q K
Sbjct: 65 LTQGGK 70
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 44.8 bits (105), Expect = 1e-05
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 11/79 (13%)
Query: 166 KPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLI 225
+P Q + + + TG GKTL+ ++ + K+ L+
Sbjct: 9 QPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKV----------LM 57
Query: 226 ICPSRELARQTHDIIQYYC 244
+ P++ L Q + +
Sbjct: 58 LAPTKPLVLQHAESFRRLF 76
Score = 37.9 bits (87), Expect = 0.003
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 13/78 (16%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
+ + + TG GKTL+ ++ + K+ L++ P++ L Q + +
Sbjct: 24 TNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKV----------LMLAPTKPLVLQHAESFR 73
Query: 68 YYCAALPIPLRTCLAIGG 85
+P +A+ G
Sbjct: 74 RL---FNLPPEKIVALTG 88
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 3e-05
Identities = 41/217 (18%), Positives = 72/217 (33%), Gaps = 65/217 (29%)
Query: 5 RNSRDII--GIAFTGSGKTLVFVLPILMFCL--EQETKLPFLPGEGPY----GLIICPSR 56
R +++++ G+ GSGKT + L CL + + K+ F + P
Sbjct: 148 RPAKNVLIDGVL--GSGKT---WV-ALDVCLSYKVQCKMDF----KIFWLNLKNCNSPET 197
Query: 57 ELARQT---HDIIQYYCA----ALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSW 109
L + I + + + I LR + +++ ++ S
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRI---------HSIQAELRRLLK-------SK 241
Query: 110 RAPRCILSLPDQVHD--IIRR-NL--RILV------EGDDVPPAC-CSFRLMKLPESL-- 155
C+L L V + NL +IL+ D + A L +L
Sbjct: 242 PYENCLLVL-LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 156 --VRALEAK--GIKKPT-PIQVQGI-PAALSGRDIIG 186
V++L K + P +V P LS II
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLS---IIA 334
Score = 34.4 bits (78), Expect = 0.034
Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 35/128 (27%)
Query: 93 DVIKKGIQYN---DPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLM 149
+V++ Y PIKT R P + + + D + + ++ + +V RL
Sbjct: 85 EVLRI--NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK-YNVS------RL- 134
Query: 150 KLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCL-- 207
+ L +AL ++ + + G+ GSGKT + L CL
Sbjct: 135 QPYLKLRQAL--LELRPAKNVLIDGVL--------------GSGKT---WV-ALDVCLSY 174
Query: 208 EQETKLPF 215
+ + K+ F
Sbjct: 175 KVQCKMDF 182
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Length = 556
Score = 43.8 bits (102), Expect = 3e-05
Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 164 IKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYG 223
KK Q++ A++G++ + A TGSGKT V +L G
Sbjct: 5 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA------GRKAKV 58
Query: 224 LIICPSRELARQTHDIIQYYC 244
+ + + Q ++ +++
Sbjct: 59 VFLATKVPVYEQQKNVFKHHF 79
Score = 33.8 bits (76), Expect = 0.056
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 65
N ++ + A TGSGKT V +L G + + + Q ++
Sbjct: 21 NGKNALICAPTGSGKTFVSILICEHHFQNMPA------GRKAKVVFLATKVPVYEQQKNV 74
Query: 66 IQYYC 70
+++
Sbjct: 75 FKHHF 79
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.40A {Anas platyrhynchos}
Length = 797
Score = 43.4 bits (101), Expect = 4e-05
Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 6/108 (5%)
Query: 137 DDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTL 196
+ P S L E + + KK Q++ A++G++ + A TGSGKT
Sbjct: 219 EAEPDDNLSENLGSAAEGIGKPPPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTF 278
Query: 197 VFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244
V +L + G + + + Q ++ +++
Sbjct: 279 VSILICEHH-FQN-----MPAGRKAKVVFLATKVPVYEQQKNVFKHHF 320
Score = 29.9 bits (66), Expect = 0.82
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 9/70 (12%)
Query: 16 TGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPI 75
TGSGKT V +L + G + + + Q ++ +++
Sbjct: 272 TGSGKTFVSILICEHH-FQN-----MPAGRKAKVVFLATKVPVYEQQKNVFKHH---FER 322
Query: 76 PLRTCLAIGG 85
+ I G
Sbjct: 323 QGYSVQGISG 332
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 43.0 bits (100), Expect = 6e-05
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 166 KPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLI 225
KP Q++ A+ G++ I A TG GKT V +L + F G+ +
Sbjct: 13 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKK------FPQGQKGKVVF 66
Query: 226 ICPSRELARQTHDIIQYYC 244
+ Q + Y
Sbjct: 67 FANQIPVYEQNKSVFSKYF 85
Score = 35.7 bits (81), Expect = 0.014
Identities = 19/123 (15%), Positives = 35/123 (28%), Gaps = 21/123 (17%)
Query: 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 66
++ I A TG GKT V +L + F G+ + + Q +
Sbjct: 28 GKNTIICAPTGCGKTFVSLLICEHHLKK------FPQGQKGKVVFFANQIPVYEQNKSVF 81
Query: 67 QYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDII 126
Y I G N P++ I+ P + + +
Sbjct: 82 SKY---FERHGYRVTGISGA------------TAENVPVEQIVENNDIIILTPQILVNNL 126
Query: 127 RRN 129
++
Sbjct: 127 KKG 129
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.70A {Anas platyrhynchos}
Length = 936
Score = 42.6 bits (99), Expect = 8e-05
Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 6/108 (5%)
Query: 137 DDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTL 196
+ P S L E + + KK Q++ A++G++ + A TGSGKT
Sbjct: 219 EAEPDDNLSENLGSAAEGIGKPPPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTF 278
Query: 197 VFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244
V +L + G + + + Q ++ +++
Sbjct: 279 VSILICEHH-FQN-----MPAGRKAKVVFLATKVPVYEQQKNVFKHHF 320
Score = 28.8 bits (63), Expect = 1.9
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Query: 16 TGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 70
TGSGKT V +L + G + + + Q ++ +++
Sbjct: 272 TGSGKTFVSILICEHH-FQN-----MPAGRKAKVVFLATKVPVYEQQKNVFKHHF 320
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.6 bits (97), Expect = 2e-04
Identities = 38/244 (15%), Positives = 71/244 (29%), Gaps = 89/244 (36%)
Query: 61 QTHDIIQYYCAALPI--PL----------RTCLAIGGVPMN-----QSLDVIKKGIQYND 103
T D + Y ++PI PL T +G P + +G+
Sbjct: 224 NTPD--KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 104 PI--KTSWRAPRCILSLPDQVHDIIRRNLRIL----VEGDDVPPACCSFRLMKLPESLVR 157
I SW + +R+ + +L V + P LP S++
Sbjct: 282 AIAETDSW----------ESFFVSVRKAITVLFFIGVRCYEAYPNTS------LPPSILE 325
Query: 158 ALEAKGIKKPTP-IQVQGIP------------AALSGRDIIGIA-------F--TGSGKT 195
P+P + + + + L + I+ +G ++
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQS 385
Query: 196 LV-FVLPILMFC----LEQETKLP-----------FLPGEGPYGLIICP--SRELARQTH 237
L L + L+Q +++P FLP + P S L +
Sbjct: 386 LYGLNLTLRKAKAPSGLDQ-SRIPFSERKLKFSNRFLP-------VASPFHSHLLVPASD 437
Query: 238 DIIQ 241
I +
Sbjct: 438 LINK 441
Score = 40.8 bits (95), Expect = 4e-04
Identities = 53/263 (20%), Positives = 83/263 (31%), Gaps = 92/263 (34%)
Query: 4 YRNSRDIIGIAF-TGSGKTLVF---VLP--ILMFCLEQETKLPFLPGEGPYGLIICPS-- 55
+ + R I + F G + LP IL LE EG PS
Sbjct: 293 FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN--------NEGV------PSPM 338
Query: 56 ---RELAR-QTHDIIQYYCAALP------IPL---RTCLAIGGVP-----MNQSLDVIKK 97
L + Q D + + LP I L L + G P +N +L K
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 98 GIQYN-DPIKTSWRAPRCILS-LP--------------DQV-HDIIRRN-------LRIL 133
+ I S R + LP D + D+++ N ++I
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 134 V----EGDDVPPACCSFRLMK--LPESLVRAL-------EAKGIKKPTPIQVQGIPAALS 180
V +G D+ R++ + E +V + E K T I G P S
Sbjct: 459 VYDTFDGSDL-------RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG-PGGAS 510
Query: 181 GRDIIGI----AFTGSGKTLVFV 199
G +G+ G+G ++
Sbjct: 511 G---LGVLTHRNKDGTGVRVIVA 530
Score = 33.1 bits (75), Expect = 0.099
Identities = 48/264 (18%), Positives = 82/264 (31%), Gaps = 80/264 (30%)
Query: 1 MVTYRNS---RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRE 57
M Y+ S +D+ A T F IL + L G G G I
Sbjct: 1633 MDLYKTSKAAQDVWNRADNHFKDTYGF--SILDIVINNPVNLTIHFG-GEKGKRI----- 1684
Query: 58 LARQTHDIIQYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILS 117
R+ + + + T + + I K I + ++R+ + +LS
Sbjct: 1685 --RENYSAMIF---------ETIVDG-----KLKTEKIFKEINEHST-SYTFRSEKGLLS 1727
Query: 118 LPD--QVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGI 175
Q PA L + ++ L++KG+ P G
Sbjct: 1728 ATQFTQ-------------------PA-----LTLMEKAAFEDLKSKGL-IPADATFAGH 1762
Query: 176 P-------AALSG----RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGL 224
A+L+ ++ + F G T+ +P E G YG+
Sbjct: 1763 SLGEYAALASLADVMSIESLVEVVFY-RGMTMQVAVP------RDEL------GRSNYGM 1809
Query: 225 I-ICPSRELARQTHDIIQYYCAAL 247
I I P R A + + +QY +
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERV 1833
Score = 30.4 bits (68), Expect = 0.65
Identities = 31/165 (18%), Positives = 56/165 (33%), Gaps = 37/165 (22%)
Query: 100 QYNDPIKTSWRA-PRCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRA 158
Q++ + C L D +H + + L++ +D L++
Sbjct: 79 QFDQVLNLCLTEFENCYLEGND-IHALAAK----LLQENDTTLVKTK--------ELIKN 125
Query: 159 -LEAKGI-KKPTPIQVQG--IPAALSGR-DIIGIAFTGSGKTLVFV--LPILMFCLEQET 211
+ A+ + K+P + A G ++ I F G G T + L L +T
Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-FGGQGNTDDYFEELRDL-----YQT 179
Query: 212 KLPFLPGEGPYGLIICPSR----ELARQTHDIIQYYCAALPIGSF 252
+ G +I S EL R T D + + L I +
Sbjct: 180 YHVLV------GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Score = 27.7 bits (61), Expect = 4.5
Identities = 23/146 (15%), Positives = 43/146 (29%), Gaps = 62/146 (42%)
Query: 44 GEGPYGLI-ICPSRELARQTHDIIQYYCAALPIPLRTCLAIGGV--PMNQSLDVIKKGIQ 100
G YG+I I P R A + + +QY R G + +N
Sbjct: 1803 GRSNYGMIAINPGRVAASFSQEALQYVVE------RVGKRTGWLVEIVN----------- 1845
Query: 101 YNDPIKTSWRAPRCILSLPDQVHDIIRRNLRILVEGD--DVPPACCSFRLMKLPESLVRA 158
YN + +Q + GD + +++
Sbjct: 1846 YN---------------VENQQ---------YVAAGDLRAL-------------DTVTNV 1868
Query: 159 LEAKGIKKPTPIQVQGIPAALSGRDI 184
L ++K I + + +LS ++
Sbjct: 1869 LNFIKLQK---IDIIELQKSLSLEEV 1891
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H
RNA-binding helicase, innate immunity, IFIH1, S
genomics; 1.60A {Homo sapiens}
Length = 216
Score = 39.4 bits (92), Expect = 5e-04
Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 152 PESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQET 211
E++ + + P Q++ AL G++II TGSGKT V V L+++
Sbjct: 19 EENVAARASPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDH-LDKKK 77
Query: 212 KLPFLPGEGPYGLIICPSRELARQTHDIIQ 241
K E +++ L Q
Sbjct: 78 K----ASEPGKVIVLVNKVLLVEQLFRKEF 103
Score = 30.2 bits (68), Expect = 0.51
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 16 TGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
TGSGKT V V L+++ K E +++ L Q
Sbjct: 57 TGSGKTRVAVYIAKDH-LDKKKK----ASEPGKVIVLVNKVLLVEQLFRKEF 103
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET:
ANP; 2.14A {Mus musculus}
Length = 555
Score = 38.7 bits (89), Expect = 0.001
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 171 QVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSR 230
Q++ A G++ I A TG GKT V +L L++ F G+ +
Sbjct: 9 QLELALPAKKGKNTIICAPTGCGKTFVSLLICEHH-LKK-----FPCGQKGKVVFFANQI 62
Query: 231 ELARQTHDIIQYYC 244
+ Q + Y
Sbjct: 63 PVYEQQATVFSRYF 76
Score = 35.3 bits (80), Expect = 0.019
Identities = 18/123 (14%), Positives = 35/123 (28%), Gaps = 21/123 (17%)
Query: 7 SRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDII 66
++ I A TG GKT V +L L++ F G+ + + Q +
Sbjct: 19 GKNTIICAPTGCGKTFVSLLICEHH-LKK-----FPCGQKGKVVFFANQIPVYEQQATVF 72
Query: 67 QYYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDII 126
Y +I G + ++ I+ P + + +
Sbjct: 73 SRY---FERLGYNIASISGATSDS------------VSVQHIIEDNDIIILTPQILVNNL 117
Query: 127 RRN 129
Sbjct: 118 NNG 120
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein;
HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19
c.37.1.19 PDB: 2fzl_A*
Length = 472
Score = 35.6 bits (82), Expect = 0.013
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 16/79 (20%)
Query: 166 KPTPIQVQGIPAALS-GRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGL 224
Q + + L R I + TGSGKT V + + L T L
Sbjct: 93 SLRDYQEKALERWLVDKRGCIVLP-TGSGKTHVAMA--AINELSTPT------------L 137
Query: 225 IICPSRELARQTHDIIQYY 243
I+ P+ LA Q + + +
Sbjct: 138 IVVPTLALAEQWKERLGIF 156
Score = 32.9 bits (75), Expect = 0.085
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 15/65 (23%)
Query: 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHD 64
+ R I + TGSGKT V + + L T LI+ P+ LA Q +
Sbjct: 107 VDKRGCIVLP-TGSGKTHVAMA--AINELSTPT------------LIVVPTLALAEQWKE 151
Query: 65 IIQYY 69
+ +
Sbjct: 152 RLGIF 156
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition
domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus
fulgidus} SCOP: c.37.1.19
Length = 237
Score = 34.3 bits (79), Expect = 0.022
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 16/79 (20%)
Query: 166 KPTPIQVQGIPAALS-GRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGL 224
Q + + L R I + TGSGKT V + + L T L
Sbjct: 93 SLRDYQEKALERWLVDKRGCI-VLPTGSGKTHVAMA--AINELSTPT------------L 137
Query: 225 IICPSRELARQTHDIIQYY 243
I+ P+ LA Q + + +
Sbjct: 138 IVVPTLALAEQWKERLGIF 156
Score = 32.7 bits (75), Expect = 0.075
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 15/65 (23%)
Query: 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHD 64
+ R I + TGSGKT V + + L T LI+ P+ LA Q +
Sbjct: 107 VDKRGCI-VLPTGSGKTHVAMA--AINELSTPT------------LIVVPTLALAEQWKE 151
Query: 65 IIQYY 69
+ +
Sbjct: 152 RLGIF 156
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 33.3 bits (76), Expect = 0.090
Identities = 15/109 (13%), Positives = 27/109 (24%), Gaps = 34/109 (31%)
Query: 108 SWRAPRCILSLPDQ-VHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKK 166
+W + L + N D+V F + P
Sbjct: 1391 AWMMNGALQILNSGIIPGNR--NA------DNVDKILEQFEYVLYP-------------- 1428
Query: 167 PTPIQVQGIPAALS---GRDIIGIAFTGSGKTLVFVLP-ILMFCLEQET 211
++ G+ A G F G + V P L + ++
Sbjct: 1429 SKTLKTDGVRAVSITSFG-------FGQKGGQAIVVHPDYLYGAITEDR 1470
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold,
winged-helix-turn-helix, antiparallel-coiled-COI domain,
ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces
cerevisiae}
Length = 1108
Score = 32.5 bits (73), Expect = 0.14
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 169 PIQVQGIPAALSGRDIIGIAFTGSGKTLV 197
P Q I G ++ A T +GKT+V
Sbjct: 187 PFQDTAISCIDRGESVLVSAHTSAGKTVV 215
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase,
tramp, exosome, DEAD, nucleotide-binding; HET: ADP;
2.90A {Saccharomyces cerevisiae}
Length = 1010
Score = 32.1 bits (72), Expect = 0.18
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 169 PIQVQGIPAALSGRDIIGIAFTGSGKTLV 197
P Q I G ++ A T +GKT+V
Sbjct: 89 PFQDTAISCIDRGESVLVSAHTSAGKTVV 117
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch
repair, nucleotide-binding, DNA-binding, polymorphism,
nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens}
PDB: 2wwy_A*
Length = 591
Score = 31.9 bits (73), Expect = 0.19
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 169 PIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
P+Q++ I ++G+++ + TG GK+L + LP L
Sbjct: 47 PLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS 83
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 31.6 bits (72), Expect = 0.28
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 11/89 (12%)
Query: 162 KGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGP 221
K + +P IQ L A TG GKT F L + +F L +G
Sbjct: 52 KCVGEPRAIQKMWAKRILRKESFAATAPTGVGKT-SFGLAMSLF----------LALKGK 100
Query: 222 YGLIICPSRELARQTHDIIQYYCAALPIG 250
+I P+ L Q + I+ Y +G
Sbjct: 101 RCYVIFPTSLLVIQAAETIRKYAEKAGVG 129
Score = 29.3 bits (66), Expect = 1.3
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
Query: 13 IAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAA 72
A TG GKT F L + +F L +G +I P+ L Q + I+ Y
Sbjct: 77 TAPTGVGKT-SFGLAMSLF----------LALKGKRCYVIFPTSLLVIQAAETIRKYAEK 125
Query: 73 LPIPLRTCLA 82
+ +
Sbjct: 126 AGVGTENLIG 135
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix,
helix-turn-helix, ATP binding, Zn(2+) binding,
hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43
c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Length = 523
Score = 30.6 bits (70), Expect = 0.58
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 169 PIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMF 205
P Q + I LSGRD + + TG GK+L + +P L+
Sbjct: 28 PGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL 64
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 30.0 bits (67), Expect = 0.73
Identities = 16/81 (19%), Positives = 24/81 (29%), Gaps = 16/81 (19%)
Query: 156 VRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLP- 214
V ++E S + A TGSGK+ TK+P
Sbjct: 207 VESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKS---------------TKVPA 251
Query: 215 FLPGEGPYGLIICPSRELARQ 235
+G L++ PS
Sbjct: 252 AYAAQGYKVLVLNPSVAATLG 272
Score = 26.9 bits (59), Expect = 8.7
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 16/58 (27%)
Query: 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLP-FLPGEGPYGLIICPSRELARQ 61
++ + A TGSGK+ TK+P +G L++ PS
Sbjct: 230 QSFQVAHLHAPTGSGKS---------------TKVPAAYAAQGYKVLVLNPSVAATLG 272
>2hx5_A Hypothetical protein; thioesterase/thiol ester dehydrase-isomerase
fold, structura genomics, joint center for structural
genomics, JCSG; 1.50A {Prochlorococcus marinus} SCOP:
d.38.1.1
Length = 152
Score = 28.9 bits (65), Expect = 0.96
Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 6/49 (12%)
Query: 126 IRRNLRILVEGDDVPPACC----SFRLMKLPESLVRALEAKGIKKPTPI 170
R +I + LPE + R LEA G+ K I
Sbjct: 106 FRCEEQIAAHALIR--HLAINAQTRHRCALPEGIDRWLEASGVGKIGSI 152
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 29.4 bits (66), Expect = 1.1
Identities = 15/72 (20%), Positives = 23/72 (31%), Gaps = 10/72 (13%)
Query: 163 GIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPY 222
G P R I G+GKT + I+ L + +
Sbjct: 1 GSAMGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRT--------- 51
Query: 223 GLIICPSRELAR 234
LI+ P+R +A
Sbjct: 52 -LILAPTRVVAA 62
Score = 29.0 bits (65), Expect = 1.4
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
Query: 3 TYRNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELAR 60
+R R I G+GKT + I+ L + + LI+ P+R +A
Sbjct: 15 IFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRT----------LILAPTRVVAA 62
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 29.5 bits (66), Expect = 1.2
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 157 RALEAKGIKKPTPIQVQGIPAALSGRD--IIGIAFTGSGKTLVFVLPILMFCLEQ 209
L+ +K + V G+P ++ TG+GK+ V + + L +
Sbjct: 27 GKLKRMTREKAKQVTVAGVPMPRDAEPRHLLVNGATGTGKS-VLLRELAYTGLLR 80
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 27.7 bits (62), Expect = 3.4
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 7/39 (17%)
Query: 109 WRAPRCIL-------SLPDQVHDIIRRNLRILVEGDDVP 140
W P I+ S PD V I RN ++G +
Sbjct: 269 WGQPNLIITPHNSAYSFPDDVAQIFVRNYIRFIDGQPLD 307
>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein
fermentation; 2.50A {Acidaminococcus fermentans} SCOP:
c.124.1.2
Length = 317
Score = 27.4 bits (61), Expect = 4.4
Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 9/51 (17%)
Query: 115 ILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIK 165
+++L D + + I + G F + P + V + +GI
Sbjct: 3 VMTLKDAIAKYVHSGDHIALGG---------FTTDRKPYAAVFEILRQGIT 44
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 27.0 bits (60), Expect = 6.1
Identities = 7/15 (46%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Query: 10 IIGIA-FTGSGKTLV 23
+IG++ T SGK+ V
Sbjct: 27 LIGVSGGTASGKSTV 41
Score = 27.0 bits (60), Expect = 6.1
Identities = 7/15 (46%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Query: 184 IIGIA-FTGSGKTLV 197
+IG++ T SGK+ V
Sbjct: 27 LIGVSGGTASGKSTV 41
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold,
ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Length = 997
Score = 26.7 bits (59), Expect = 8.3
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 16 TGSGKTLVFVLP 27
TG GKTLV L
Sbjct: 101 TGEGKTLVATLA 112
Score = 26.7 bits (59), Expect = 8.3
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 190 TGSGKTLVFVLP 201
TG GKTLV L
Sbjct: 101 TGEGKTLVATLA 112
>4dn7_A ABC transporter, ATP-binding protein; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: 1PE; 1.60A {Methanosarcina
maze}
Length = 429
Score = 26.5 bits (59), Expect = 9.0
Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 31/72 (43%)
Query: 49 GLIICPSRELARQTHDIIQYYC-----------AAL-------------------PIPLR 78
+ + + + A + ++ ++ Y A +P++
Sbjct: 109 NVELMSTHK-AMEKYEWLKDYSWKLVQVDADKYTAKTYLEDADGYFIRVPAGKKTSMPVQ 167
Query: 79 TCLAIGGVPMNQ 90
TCL +G Q
Sbjct: 168 TCLMLGSKKAAQ 179
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.145 0.452
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,003,825
Number of extensions: 243687
Number of successful extensions: 1019
Number of sequences better than 10.0: 1
Number of HSP's gapped: 924
Number of HSP's successfully gapped: 140
Length of query: 252
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 161
Effective length of database: 4,160,982
Effective search space: 669918102
Effective search space used: 669918102
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.3 bits)