RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7786
(252 letters)
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 82.3 bits (202), Expect = 2e-19
Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 3/124 (2%)
Query: 129 NLRILVEGDDV--PPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIG 186
++ + V G D +F +KL ++ + ++PTPIQ IPA L RDI+
Sbjct: 4 SIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMA 63
Query: 187 IAFTGSGKTLVFVLPILMFCLEQETKL-PFLPGEGPYGLIICPSRELARQTHDIIQYYCA 245
A TGSGKT F++PI+ + Q+ + P LI+ P+RELA Q Q +
Sbjct: 64 CAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSL 123
Query: 246 ALPI 249
P+
Sbjct: 124 NTPL 127
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 73.3 bits (179), Expect = 2e-16
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 138 DVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLV 197
+ SF M L ESL+R + A G +KP+ IQ + I + G D+I A +G+GKT
Sbjct: 6 NWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTAT 65
Query: 198 FVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244
F + IL L++ P+RELA+Q ++
Sbjct: 66 FAISILQQIELDLK--------ATQALVLAPTRELAQQIQKVVMALG 104
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 72.7 bits (177), Expect = 3e-16
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
F L L+ + G +KP+PIQ + IP ALSGRDI+ A G+GK+ +++P+L
Sbjct: 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLE 63
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCA 245
++ ++I P+RELA Q I
Sbjct: 64 RLDLKKD--------NIQAMVIVPTRELALQVSQICIQVSK 96
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 72.3 bits (176), Expect = 4e-16
Identities = 18/95 (18%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 150 KLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQ 209
+ V L+ +GI++ P Q + + SG++++ T +GKTL+ + ++ ++
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG 68
Query: 210 ETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244
L + P R LA + ++ + +
Sbjct: 69 -----------GKSLYVVPLRALAGEKYESFKKWE 92
Score = 33.8 bits (76), Expect = 0.010
Identities = 10/66 (15%), Positives = 28/66 (42%), Gaps = 11/66 (16%)
Query: 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHD 64
+ ++++ T +GKTL+ + ++ ++ L + P R LA + ++
Sbjct: 38 FSGKNLLLAMPTAAGKTLLAEMAMVREAIKG-----------GKSLYVVPLRALAGEKYE 86
Query: 65 IIQYYC 70
+ +
Sbjct: 87 SFKKWE 92
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 72.6 bits (177), Expect = 5e-16
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 11/115 (9%)
Query: 135 EGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGK 194
E DV P +F M L E L+R + A G +KP+ IQ + I + GRD+I + +G+GK
Sbjct: 11 EEVDVTP---TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGK 67
Query: 195 TLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPI 249
T F + +L + LI+ P+RELA Q + + +
Sbjct: 68 TATFSISVLQCL--------DIQVRETQALILAPTRELAVQIQKGLLALGDYMNV 114
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 71.8 bits (175), Expect = 7e-16
Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
FR L L+RA+ G + P+ +Q + IP A+ G D++ A +G GKT VFVL L
Sbjct: 2 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 61
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALP 248
+ L++C +RELA Q + + +P
Sbjct: 62 QLEPVTGQ--------VSVLVMCHTRELAFQISKEYERFSKYMP 97
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 69.5 bits (169), Expect = 8e-15
Identities = 23/106 (21%), Positives = 33/106 (31%), Gaps = 12/106 (11%)
Query: 144 CSFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPIL 203
C F L + V K + +P IQ L A TG GKT + L
Sbjct: 22 CLFPEDFLLKEFVEFFR-KCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSL 80
Query: 204 MFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCAALPI 249
L+ +I P+ L Q + I+ Y +
Sbjct: 81 FLALKG-----------KRCYVIFPTSLLVIQAAETIRKYAEKAGV 115
Score = 41.8 bits (97), Expect = 3e-05
Identities = 16/129 (12%), Positives = 34/129 (26%), Gaps = 22/129 (17%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
A TG GKT + L L+ +I P+ L Q + I+
Sbjct: 59 ESFAATAPTGVGKTSFGLAMSLFLALKG-----------KRCYVIFPTSLLVIQAAETIR 107
Query: 68 YYCAALPIPLRTCLAIGGVPMNQSLDVIKKGIQYNDPIKTSWRAPRCILSLPDQVHDIIR 127
Y + + + + + R + +++ + R
Sbjct: 108 KYAEKAGVG---------TENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYR 158
Query: 128 --RNLRILV 134
+ +
Sbjct: 159 ELGHFDFIF 167
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 67.5 bits (164), Expect = 3e-14
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
F M+L E+L+R + G ++P+ IQ + I + G D++ A +G+GKT F + L
Sbjct: 11 KFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQ 70
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYCA 245
+ P L++ P+RELA Q ++
Sbjct: 71 RIDTSV--------KAPQALMLAPTRELALQIQKVVMALAF 103
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 66.5 bits (161), Expect = 6e-14
Identities = 26/68 (38%), Positives = 38/68 (55%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
+F L L+ + G +KP+PIQ + IP A++GRDI+ A G+GKT FV+P L
Sbjct: 2 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE 61
Query: 205 FCLEQETK 212
+ K
Sbjct: 62 KVKPKLNK 69
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 62.8 bits (151), Expect = 1e-12
Identities = 24/100 (24%), Positives = 42/100 (42%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILM 204
F ++ A++ KPT IQ + IP AL G ++G + TG+GKT ++LPI+
Sbjct: 2 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIME 61
Query: 205 FCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYYC 244
+ ++ + L E + T +
Sbjct: 62 KIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRM 101
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 58.9 bits (141), Expect = 3e-11
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 145 SFRLMKLPESLVRAL-EAKGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPIL 203
++ L + L E G ++ P Q + I LSGRD + + TG GK+L + +P L
Sbjct: 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPAL 62
Query: 204 MFCLEQETKLP 214
+ P
Sbjct: 63 LLNGLTVVVSP 73
Score = 28.1 bits (61), Expect = 0.76
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 6 NSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLP 40
+ RD + + TG GK+L + +P L+ P
Sbjct: 39 SGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSP 73
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 58.1 bits (140), Expect = 5e-11
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 145 SFRLMKLPESLVRALEAKGIKKPTPIQVQGIPAALSGR-DIIGIAFTGSGKTLVFVLPIL 203
+F + L ++++ A+ KG +KPT IQ++ IP L+ +I+ A TGSGKT F +P++
Sbjct: 5 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 64
Query: 204 MFC 206
Sbjct: 65 ELV 67
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 53.8 bits (128), Expect = 4e-09
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHD 64
R R I G+GKT ++ I+ +++ G LI+ P+R +A + +
Sbjct: 7 RKKRLTIMDLHPGAGKTKRYLPAIVREAIKR----------GLRTLILAPTRVVAAEMEE 56
Query: 65 IIQYYC 70
++
Sbjct: 57 ALRGLP 62
Score = 53.0 bits (126), Expect = 7e-09
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 10/65 (15%)
Query: 180 SGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDI 239
R I G+GKT ++ I+ +++ G LI+ P+R +A + +
Sbjct: 8 KKRLTIMDLHPGAGKTKRYLPAIVREAIKR----------GLRTLILAPTRVVAAEMEEA 57
Query: 240 IQYYC 244
++
Sbjct: 58 LRGLP 62
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 41.3 bits (95), Expect = 3e-05
Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 11/87 (12%)
Query: 162 KGIKKPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGP 221
+ + +P Q + + + TG GKTL+ ++ + G
Sbjct: 5 RDLIQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTKY----------GG 53
Query: 222 YGLIICPSRELARQTHDIIQYYCAALP 248
L++ P++ L Q + + P
Sbjct: 54 KVLMLAPTKPLVLQHAESFRRLFNLPP 80
Score = 30.5 bits (67), Expect = 0.13
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 10/67 (14%)
Query: 8 RDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQ 67
+ + + TG GKTL+ ++ + G L++ P++ L Q + +
Sbjct: 24 TNCLIVLPTGLGKTLIAMMIAEYRLTKY----------GGKVLMLAPTKPLVLQHAESFR 73
Query: 68 YYCAALP 74
P
Sbjct: 74 RLFNLPP 80
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 30.4 bits (67), Expect = 0.10
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 5 RNSRDIIGIAFTGSGKTLVFVLPILMFC 32
+ + G+GKT F+ IL C
Sbjct: 5 KKGMTTVLDFHPGAGKTRRFLPQILAEC 32
Score = 30.0 bits (66), Expect = 0.14
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 181 GRDIIGIAFTGSGKTLVFVLPILMFC 206
G + G+GKT F+ IL C
Sbjct: 7 GMTTVLDFHPGAGKTRRFLPQILAEC 32
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 30.2 bits (67), Expect = 0.18
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 166 KPTPIQVQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFC 206
Q + + L + + TGSGKT V + I
Sbjct: 70 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELS 110
>d1poia_ c.124.1.2 (A:) Glutaconate:CoA transferase alpha
{Acidaminococcus fermentans [TaxId: 905]}
Length = 317
Score = 29.9 bits (67), Expect = 0.25
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 9/56 (16%)
Query: 115 ILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKKPTPI 170
+++L D + + I + G F + P + V + +GI T +
Sbjct: 3 VMTLKDAIAKYVHSGDHIALGG---------FTTDRKPYAAVFEILRQGITDLTGL 49
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB
{Bacillus caldotenax [TaxId: 1395]}
Length = 413
Score = 29.7 bits (66), Expect = 0.30
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 18/79 (22%)
Query: 167 PTPIQ--VQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGL 224
P I V G+ + + ++G TG+GKT + + + P L
Sbjct: 17 PQAIAKLVDGLRRGVKHQTLLGA--TGTGKTF------TISNVIAQVNKPTL-------- 60
Query: 225 IICPSRELARQTHDIIQYY 243
+I ++ LA Q + ++ +
Sbjct: 61 VIAHNKTLAGQLYSELKEF 79
Score = 26.6 bits (58), Expect = 2.9
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 14/65 (21%)
Query: 5 RNSRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHD 64
R + + TG+GKT + + + P L +I ++ LA Q +
Sbjct: 29 RGVKHQTLLGATGTGKTF------TISNVIAQVNKPTL--------VIAHNKTLAGQLYS 74
Query: 65 IIQYY 69
++ +
Sbjct: 75 ELKEF 79
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human
hepatitis C virus (HCV), different isolates [TaxId:
11103]}
Length = 136
Score = 28.7 bits (63), Expect = 0.41
Identities = 10/54 (18%), Positives = 15/54 (27%), Gaps = 14/54 (25%)
Query: 16 TGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 69
TGSGK+ + Q G L++ PS +
Sbjct: 17 TGSGKSTK----VPAAYAAQ----------GYKVLVLNPSVAATLGFGAYMSKA 56
Score = 28.7 bits (63), Expect = 0.41
Identities = 10/54 (18%), Positives = 15/54 (27%), Gaps = 14/54 (25%)
Query: 190 TGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGLIICPSRELARQTHDIIQYY 243
TGSGK+ + Q G L++ PS +
Sbjct: 17 TGSGKSTK----VPAAYAAQ----------GYKVLVLNPSVAATLGFGAYMSKA 56
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB
{Thermus thermophilus [TaxId: 274]}
Length = 408
Score = 28.3 bits (62), Expect = 0.97
Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 18/79 (22%)
Query: 167 PTPIQ--VQGIPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPYGL 224
P I V+ + ++G TG+GKT+ M + + P L
Sbjct: 14 PKAIAGLVEALRDGERFVTLLGA--TGTGKTV------TMAKVIEALGRPAL-------- 57
Query: 225 IICPSRELARQTHDIIQYY 243
++ P++ LA Q +
Sbjct: 58 VLAPNKILAAQLAAEFREL 76
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 27.2 bits (59), Expect = 2.2
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 13/89 (14%)
Query: 165 KKPTPIQVQG--IPAALSGRDIIGIAFTGSGKTLVFVLPILMFCLEQETKLPFLPGEGPY 222
+K + V G +P R ++ TG+GK+ V + + L + G
Sbjct: 32 EKAKQVTVAGVPMPRDAEPRHLLVNGATGTGKS-VLLRELAYTGLLR----------GDR 80
Query: 223 GLIICPSRELARQTHDIIQYYCAALPIGS 251
+I+ P+ ++ + +
Sbjct: 81 MVIVDPNGDMLSKFGRDKDIILNPYDQRT 109
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus
[TaxId: 271]}
Length = 61
Score = 25.0 bits (55), Expect = 2.2
Identities = 6/54 (11%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 113 RCILSLPDQVHDIIRRNLRILVEGDDVPPACCSFRLMKLPESLVRALEAKGIKK 166
+ + L ++ +++ +R + + +R +E K ++K
Sbjct: 4 KALSKLSEREAMVLK--MRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRK 55
>d1rzna_ c.52.1.28 (A:) Recombination protein U (RecU)/PBP related
factor A (PrfA) {Bacillus subtilis [TaxId: 1423]}
Length = 165
Score = 25.5 bits (56), Expect = 4.7
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 165 KKPTPIQVQGIPAALSGRDIIGIAF 189
KKPTP+Q+ + +I A+
Sbjct: 23 KKPTPVQIVNVHYPKRSAAVIKEAY 47
>d1vqoy1 c.9.2.1 (Y:95-236) Ribosomal protein L32e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 142
Score = 25.1 bits (55), Expect = 5.9
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 105 IKTSWRAPRCILS 117
+ TSWR PR LS
Sbjct: 45 VSTSWRKPRGQLS 57
>d2fi9a1 c.103.1.1 (A:11-128) Hypothetical outer membrane protein
BH05650 {Bartonella henselae [TaxId: 38323]}
Length = 118
Score = 24.8 bits (54), Expect = 5.9
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 7/70 (10%)
Query: 112 PRCILSLPDQVHDIIRRNL-RILVEGDDVPPACCSF--RLMKLPESLVRALEAKGIKKPT 168
P I + + ++ R+L E D + L++LPE L L K I
Sbjct: 31 PSGIYGIDMTGPVPTQEDISRVLEESDQIEVLLIGTGVELLRLPEELRVLLWEKRI---- 86
Query: 169 PIQVQGIPAA 178
AA
Sbjct: 87 SSDTMSTGAA 96
>d2a10a1 d.58.56.1 (A:4-107) Carboxysome shell protein CcmK4
{Synechocystis sp. PCC 6803 [TaxId: 1148]}
Length = 104
Score = 24.3 bits (53), Expect = 7.2
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 9/39 (23%)
Query: 170 IQVQGIPAALSGRD---------IIGIAFTGSGKTLVFV 199
I+ G P L+ D I+G GS + + +
Sbjct: 7 IETIGFPGILAAADAMVKAGRITIVGYIRAGSARFTLNI 45
>d1ooya2 c.124.1.2 (A:1-242) Succinate:CoA transferase, N-terminal
domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 242
Score = 24.9 bits (54), Expect = 9.1
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 142 ACCSFRLMKLPESLVRALEAKGIKKPTPIQVQG 174
F L +PE+L+ AL G+K+ T +
Sbjct: 21 LVGGFGLCGIPENLIGALLKTGVKELTAVSNNA 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.326 0.145 0.452
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 984,959
Number of extensions: 47495
Number of successful extensions: 212
Number of sequences better than 10.0: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 43
Length of query: 252
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 169
Effective length of database: 1,268,006
Effective search space: 214293014
Effective search space used: 214293014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.5 bits)