BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7787
         (463 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2K0A|A Chain A, 1h, 15n And 13c Chemical Shift Assignments For Rds3
           Protein
          Length = 109

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 45/67 (67%), Gaps = 1/67 (1%)

Query: 322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICG-GPGVSDAYYCKE 380
           G+  G LCEKCDGKC ICDSYVRP   VR+C+ C++G     C+IC    GV+DA+YC E
Sbjct: 18  GVQTGLLCEKCDGKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWE 77

Query: 381 CTIQEKD 387
           C    KD
Sbjct: 78  CCRLGKD 84



 Score = 71.6 bits (174), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 43/63 (68%), Gaps = 1/63 (1%)

Query: 15 GRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICG-GPGVSDAYYCKECTIQ 73
          G LCEKCDGKC ICDSYVRP   VR+C+ C++G     C+IC    GV+DA+YC EC   
Sbjct: 22 GLLCEKCDGKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWECCRL 81

Query: 74 EKD 76
           KD
Sbjct: 82 GKD 84


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.445 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,173,142
Number of Sequences: 62578
Number of extensions: 597324
Number of successful extensions: 1073
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1065
Number of HSP's gapped (non-prelim): 6
length of query: 463
length of database: 14,973,337
effective HSP length: 102
effective length of query: 361
effective length of database: 8,590,381
effective search space: 3101127541
effective search space used: 3101127541
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)