BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7787
(463 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P83871|PHF5A_RAT PHD finger-like domain-containing protein 5A OS=Rattus norvegicus
GN=Phf5a PE=2 SV=1
Length = 110
Score = 138 bits (348), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 68/92 (73%), Positives = 75/92 (81%), Gaps = 2/92 (2%)
Query: 322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
G+ IGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC
Sbjct: 16 GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 75
Query: 382 TIQEKDVSTVEPQFYELIGTKGCSIVFQKNTY 413
TIQEKD P+ L G+ + +++ Y
Sbjct: 76 TIQEKDRDGC-PKIVNL-GSSKTDLFYERKKY 105
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/81 (82%), Positives = 68/81 (83%), Gaps = 5/81 (6%)
Query: 1 MELFHPTIFHIS-----AIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 55
M HP + AIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI
Sbjct: 1 MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 60
Query: 56 CGGPGVSDAYYCKECTIQEKD 76
CGGPGVSDAYYCKECTIQEKD
Sbjct: 61 CGGPGVSDAYYCKECTIQEKD 81
>sp|P83870|PHF5A_MOUSE PHD finger-like domain-containing protein 5A OS=Mus musculus
GN=Phf5a PE=1 SV=1
Length = 110
Score = 138 bits (348), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 68/92 (73%), Positives = 75/92 (81%), Gaps = 2/92 (2%)
Query: 322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
G+ IGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC
Sbjct: 16 GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 75
Query: 382 TIQEKDVSTVEPQFYELIGTKGCSIVFQKNTY 413
TIQEKD P+ L G+ + +++ Y
Sbjct: 76 TIQEKDRDGC-PKIVNL-GSSKTDLFYERKKY 105
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/81 (82%), Positives = 68/81 (83%), Gaps = 5/81 (6%)
Query: 1 MELFHPTIFHIS-----AIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 55
M HP + AIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI
Sbjct: 1 MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 60
Query: 56 CGGPGVSDAYYCKECTIQEKD 76
CGGPGVSDAYYCKECTIQEKD
Sbjct: 61 CGGPGVSDAYYCKECTIQEKD 81
>sp|Q7RTV0|PHF5A_HUMAN PHD finger-like domain-containing protein 5A OS=Homo sapiens
GN=PHF5A PE=1 SV=1
Length = 110
Score = 138 bits (348), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 68/92 (73%), Positives = 75/92 (81%), Gaps = 2/92 (2%)
Query: 322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
G+ IGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC
Sbjct: 16 GVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 75
Query: 382 TIQEKDVSTVEPQFYELIGTKGCSIVFQKNTY 413
TIQEKD P+ L G+ + +++ Y
Sbjct: 76 TIQEKDRDGC-PKIVNL-GSSKTDLFYERKKY 105
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/81 (82%), Positives = 68/81 (83%), Gaps = 5/81 (6%)
Query: 1 MELFHPTIFHIS-----AIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 55
M HP + AIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI
Sbjct: 1 MAKHHPDLIFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 60
Query: 56 CGGPGVSDAYYCKECTIQEKD 76
CGGPGVSDAYYCKECTIQEKD
Sbjct: 61 CGGPGVSDAYYCKECTIQEKD 81
>sp|Q9VMC8|PHF5_DROME Uncharacterized protein CG9548 OS=Drosophila melanogaster GN=CG9548
PE=3 SV=2
Length = 111
Score = 132 bits (331), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 66/92 (71%), Positives = 73/92 (79%), Gaps = 2/92 (2%)
Query: 322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
G+ IGRLCEK DGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCK C
Sbjct: 16 GVAIGRLCEKDDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKSC 75
Query: 382 TIQEKDVSTVEPQFYELIGTKGCSIVFQKNTY 413
TIQEKD P+ L G+ + +++ Y
Sbjct: 76 TIQEKDRDGC-PKIVNL-GSSKTDLFYERKKY 105
Score = 130 bits (328), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/81 (80%), Positives = 66/81 (81%), Gaps = 5/81 (6%)
Query: 1 MELFHPTIFHIS-----AIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 55
M HP + AIGRLCEK DGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI
Sbjct: 1 MAKHHPDLIFCRKQPGVAIGRLCEKDDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 60
Query: 56 CGGPGVSDAYYCKECTIQEKD 76
CGGPGVSDAYYCK CTIQEKD
Sbjct: 61 CGGPGVSDAYYCKSCTIQEKD 81
>sp|Q0WMV8|PHF5B_ARATH PHD finger-like domain-containing protein 5B OS=Arabidopsis
thaliana GN=At1g07170 PE=2 SV=1
Length = 110
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/92 (69%), Positives = 73/92 (79%), Gaps = 2/92 (2%)
Query: 322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
G+ IGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGS+QGRCVICGG G+SDAYYCKEC
Sbjct: 16 GIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVICGGVGISDAYYCKEC 75
Query: 382 TIQEKDVSTVEPQFYELIGTKGCSIVFQKNTY 413
T QEKD P+ L G+ + +++ Y
Sbjct: 76 TQQEKDRDGC-PKIVNL-GSAKTDLFYERKKY 105
Score = 129 bits (324), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 63/81 (77%), Positives = 66/81 (81%), Gaps = 5/81 (6%)
Query: 1 MELFHPTIFHIS-----AIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 55
M HP + AIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGS+QGRCVI
Sbjct: 1 MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60
Query: 56 CGGPGVSDAYYCKECTIQEKD 76
CGG G+SDAYYCKECT QEKD
Sbjct: 61 CGGVGISDAYYCKECTQQEKD 81
>sp|P0DI19|PHF5A_ARATH PHD finger-like domain-containing protein 5A OS=Arabidopsis
thaliana GN=At2g30000 PE=2 SV=1
Length = 110
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/92 (69%), Positives = 73/92 (79%), Gaps = 2/92 (2%)
Query: 322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
G+ IGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGS+QGRCVICGG G+SDAYYCKEC
Sbjct: 16 GIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVICGGVGISDAYYCKEC 75
Query: 382 TIQEKDVSTVEPQFYELIGTKGCSIVFQKNTY 413
T QEKD P+ L G+ + +++ Y
Sbjct: 76 TQQEKDRDGC-PKIVNL-GSAKTDLFYERKKY 105
Score = 129 bits (324), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 63/81 (77%), Positives = 66/81 (81%), Gaps = 5/81 (6%)
Query: 1 MELFHPTIFHIS-----AIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVI 55
M HP + AIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGS+QGRCVI
Sbjct: 1 MAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVI 60
Query: 56 CGGPGVSDAYYCKECTIQEKD 76
CGG G+SDAYYCKECT QEKD
Sbjct: 61 CGGVGISDAYYCKECTQQEKD 81
>sp|Q9UTB8|INI1_SCHPO Pre-mRNA-splicing factor ini1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ini1 PE=3 SV=1
Length = 117
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 54/66 (81%)
Query: 322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKEC 381
G+T+G+LCE+CD KC ICDS+VRP TLVRICDEC +GS Q RC+ICG PGVSD YYC EC
Sbjct: 16 GITVGKLCERCDEKCPICDSHVRPTTLVRICDECAFGSSQDRCIICGAPGVSDCYYCSEC 75
Query: 382 TIQEKD 387
T E D
Sbjct: 76 TRMEYD 81
Score = 98.6 bits (244), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 45/63 (71%), Positives = 51/63 (80%)
Query: 14 IGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQ 73
+G+LCE+CD KC ICDS+VRP TLVRICDEC +GS Q RC+ICG PGVSD YYC ECT
Sbjct: 19 VGKLCERCDEKCPICDSHVRPTTLVRICDECAFGSSQDRCIICGAPGVSDCYYCSECTRM 78
Query: 74 EKD 76
E D
Sbjct: 79 EYD 81
>sp|Q06835|RDS3_YEAST Pre-mRNA-splicing factor RDS3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RDS3 PE=1 SV=1
Length = 107
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 322 GLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICG-GPGVSDAYYCKE 380
G+ G LCEKCDGKC ICDSYVRP VR+C+ C++G C+IC GV+DA+YC E
Sbjct: 16 GVQTGLLCEKCDGKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWE 75
Query: 381 CTIQEKD 387
C KD
Sbjct: 76 CCRLGKD 82
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 15 GRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICG-GPGVSDAYYCKECTIQ 73
G LCEKCDGKC ICDSYVRP VR+C+ C++G C+IC GV+DA+YC EC
Sbjct: 20 GLLCEKCDGKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWECCRL 79
Query: 74 EKD 76
KD
Sbjct: 80 GKD 82
>sp|P0DJM4|HRCA_LISMO Heat-inducible transcription repressor HrcA OS=Listeria
monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
GN=hrcA PE=3 SV=1
Length = 345
Score = 32.7 bits (73), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 19/146 (13%)
Query: 113 QNSKLIAGKKKSCGELDPGPPEWRNALSGFEKQMFEIEQHRLIVGLVDEGGGQACLPTAP 172
QNS L+ + + GP +N LSGF Q LI+ + D+G L T P
Sbjct: 108 QNSALMLSDLTNYTSILLGPEATKNHLSGFRFVPINNFQAMLIL-ITDQGHVDNHLVTIP 166
Query: 173 RTTDPGNRTIRTMMTMLLQFWLGLKVMDVTLLTALKKRFSLLQALQQVDNLSLLLHVFHF 232
T + I M+ +L + +GL + D+ + ++ + LL + V N +HVF
Sbjct: 167 EGTTLSD--IERMVNILNERLVGLSLDDLKVQIPMEVK-ELLG--KHVRNYESFMHVFS- 220
Query: 233 LNHIHTRHYSVIDSFFKAQQEDEIFG 258
DSF +A Q+ FG
Sbjct: 221 ------------DSFAQASQQKVYFG 234
>sp|B8DE36|HRCA_LISMH Heat-inducible transcription repressor HrcA OS=Listeria
monocytogenes serotype 4a (strain HCC23) GN=hrcA PE=3
SV=1
Length = 345
Score = 32.7 bits (73), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 19/146 (13%)
Query: 113 QNSKLIAGKKKSCGELDPGPPEWRNALSGFEKQMFEIEQHRLIVGLVDEGGGQACLPTAP 172
QNS L+ + + GP +N LSGF Q LI+ + D+G L T P
Sbjct: 108 QNSALMLSDLTNYTSILLGPEATKNHLSGFRFVPINNFQAMLIL-ITDQGHVDNHLVTIP 166
Query: 173 RTTDPGNRTIRTMMTMLLQFWLGLKVMDVTLLTALKKRFSLLQALQQVDNLSLLLHVFHF 232
T + I M+ +L + +GL + D+ + ++ + LL + V N +HVF
Sbjct: 167 EGTTLSD--IERMVNILNERLVGLSLDDLKVQIPMEVK-ELLG--KHVRNYESFMHVFS- 220
Query: 233 LNHIHTRHYSVIDSFFKAQQEDEIFG 258
DSF +A Q+ FG
Sbjct: 221 ------------DSFAQASQQKVYFG 234
>sp|Q71ZJ5|HRCA_LISMF Heat-inducible transcription repressor HrcA OS=Listeria
monocytogenes serotype 4b (strain F2365) GN=hrcA PE=3
SV=1
Length = 345
Score = 32.7 bits (73), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 19/146 (13%)
Query: 113 QNSKLIAGKKKSCGELDPGPPEWRNALSGFEKQMFEIEQHRLIVGLVDEGGGQACLPTAP 172
QNS L+ + + GP +N LSGF Q LI+ + D+G L T P
Sbjct: 108 QNSALMLSDLTNYTSILLGPEATKNHLSGFRFVPINNFQAMLIL-ITDQGHVDNHLVTIP 166
Query: 173 RTTDPGNRTIRTMMTMLLQFWLGLKVMDVTLLTALKKRFSLLQALQQVDNLSLLLHVFHF 232
T + I M+ +L + +GL + D+ + ++ + LL + V N +HVF
Sbjct: 167 EGTTLSD--IERMVNILNERLVGLSLDDLKVQIPMEVK-ELLG--KHVRNYESFMHVFS- 220
Query: 233 LNHIHTRHYSVIDSFFKAQQEDEIFG 258
DSF +A Q+ FG
Sbjct: 221 ------------DSFAQASQQKVYFG 234
>sp|C1KVC2|HRCA_LISMC Heat-inducible transcription repressor HrcA OS=Listeria
monocytogenes serotype 4b (strain CLIP80459) GN=hrcA
PE=3 SV=1
Length = 345
Score = 32.7 bits (73), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 19/146 (13%)
Query: 113 QNSKLIAGKKKSCGELDPGPPEWRNALSGFEKQMFEIEQHRLIVGLVDEGGGQACLPTAP 172
QNS L+ + + GP +N LSGF Q LI+ + D+G L T P
Sbjct: 108 QNSALMLSDLTNYTSILLGPEATKNHLSGFRFVPINNFQAMLIL-ITDQGHVDNHLVTIP 166
Query: 173 RTTDPGNRTIRTMMTMLLQFWLGLKVMDVTLLTALKKRFSLLQALQQVDNLSLLLHVFHF 232
T + I M+ +L + +GL + D+ + ++ + LL + V N +HVF
Sbjct: 167 EGTTLSD--IERMVNILNERLVGLSLDDLKVQIPMEVK-ELLG--KHVRNYESFMHVFS- 220
Query: 233 LNHIHTRHYSVIDSFFKAQQEDEIFG 258
DSF +A Q+ FG
Sbjct: 221 ------------DSFAQASQQKVYFG 234
>sp|G2K048|HRCA_LISM4 Heat-inducible transcription repressor HrcA OS=Listeria
monocytogenes serotype 1/2a (strain 10403S) GN=hrcA PE=3
SV=1
Length = 345
Score = 32.7 bits (73), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 19/146 (13%)
Query: 113 QNSKLIAGKKKSCGELDPGPPEWRNALSGFEKQMFEIEQHRLIVGLVDEGGGQACLPTAP 172
QNS L+ + + GP +N LSGF Q LI+ + D+G L T P
Sbjct: 108 QNSALMLSDLTNYTSILLGPEATKNHLSGFRFVPINNFQAMLIL-ITDQGHVDNHLVTIP 166
Query: 173 RTTDPGNRTIRTMMTMLLQFWLGLKVMDVTLLTALKKRFSLLQALQQVDNLSLLLHVFHF 232
T + I M+ +L + +GL + D+ + ++ + LL + V N +HVF
Sbjct: 167 EGTTLSD--IERMVNILNERLVGLSLDDLKVQIPMEVK-ELLG--KHVRNYESFMHVFS- 220
Query: 233 LNHIHTRHYSVIDSFFKAQQEDEIFG 258
DSF +A Q+ FG
Sbjct: 221 ------------DSFAQASQQKVYFG 234
>sp|Q92BN6|HRCA_LISIN Heat-inducible transcription repressor HrcA OS=Listeria innocua
serovar 6a (strain CLIP 11262) GN=hrcA PE=3 SV=1
Length = 345
Score = 32.7 bits (73), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 19/146 (13%)
Query: 113 QNSKLIAGKKKSCGELDPGPPEWRNALSGFEKQMFEIEQHRLIVGLVDEGGGQACLPTAP 172
QNS L+ + + GP +N LSGF Q LI+ + D+G L T P
Sbjct: 108 QNSALMLSDLTNYTSILLGPEATKNHLSGFRFVPINNFQAMLIL-ITDQGHVDNHLVTIP 166
Query: 173 RTTDPGNRTIRTMMTMLLQFWLGLKVMDVTLLTALKKRFSLLQALQQVDNLSLLLHVFHF 232
T + I M+ +L + +GL + D+ + ++ + LL + V N +HVF
Sbjct: 167 EGTTLSD--IERMVNILNERLVGLSLDDLKVQIPMEVK-ELLG--KHVRNYESFMHVFS- 220
Query: 233 LNHIHTRHYSVIDSFFKAQQEDEIFG 258
DSF +A Q+ FG
Sbjct: 221 ------------DSFAQASQQKVYFG 234
>sp|A0AIS6|HRCA_LISW6 Heat-inducible transcription repressor HrcA OS=Listeria welshimeri
serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334)
GN=hrcA PE=3 SV=1
Length = 345
Score = 32.7 bits (73), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 62/146 (42%), Gaps = 19/146 (13%)
Query: 113 QNSKLIAGKKKSCGELDPGPPEWRNALSGFEKQMFEIEQHRLIVGLVDEGGGQACLPTAP 172
QNS L+ + + GP +N LSGF Q LI+ + D+G L T P
Sbjct: 108 QNSALMLSDLTNYTSILLGPEATKNHLSGFRFVPINNFQAMLIL-ITDQGHVDNHLVTIP 166
Query: 173 RTTDPGNRTIRTMMTMLLQFWLGLKVMDVTLLTALKKRFSLLQALQQVDNLSLLLHVFHF 232
T + I M+ +L + +GL + D+ + ++ + LL + V N +HVF
Sbjct: 167 EGTTLSD--IERMVNILNERLVGLSLDDLKVQIPMEVK-ELLG--KHVRNYESFMHVFS- 220
Query: 233 LNHIHTRHYSVIDSFFKAQQEDEIFG 258
DSF +A Q+ FG
Sbjct: 221 ------------DSFAQASQQKVYFG 234
>sp|P0C9H9|1106L_ASFM2 Protein MGF 110-6L OS=African swine fever virus (isolate
Tick/Malawi/Lil 20-1/1983) GN=Mal-011 PE=3 SV=1
Length = 118
Score = 32.3 bits (72), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 15 GRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQG--RCVICGGPGVSDAY 65
G K DG + + YVRPC++ R D+C Y +G + C P + Y
Sbjct: 54 GNCINKIDGSVIYKNEYVRPCSVSRSMDKCMYDLNKGIYHSMSCSDPKAWNPY 106
Score = 32.3 bits (72), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 326 GRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQG--RCVICGGPGVSDAY 376
G K DG + + YVRPC++ R D+C Y +G + C P + Y
Sbjct: 54 GNCINKIDGSVIYKNEYVRPCSVSRSMDKCMYDLNKGIYHSMSCSDPKAWNPY 106
>sp|Q9ZMV7|TOP1_HELPJ DNA topoisomerase 1 OS=Helicobacter pylori (strain J99) GN=topA
PE=3 SV=1
Length = 736
Score = 32.0 bits (71), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 38/200 (19%), Positives = 81/200 (40%), Gaps = 24/200 (12%)
Query: 174 TTDPGNRTIRTMMTMLLQFWLGLKVMDVTLLTALKKRFSLLQALQQVDNLSLLLHVFHFL 233
T P + +++ +L +G ++ L+ R + +Q+ L V L
Sbjct: 448 TEPPARYSEASLIKVLESLGIGRPSTYAPTISLLQNRDYIKVEKKQISALESAFKVIEIL 507
Query: 234 NHIHTRHYS-VIDSFFKAQQEDEIFGSSKTKAIKYSSSITSVHIFRLHPVKNGQTSSGFD 292
+H+ ++DS F A E+E+ ++ KA Y + + + ++ G+ +
Sbjct: 508 E----KHFEEIVDSKFSASLEEELDNIAQNKA-DYQQVLKDFYYPFMDKIEAGKKNIISQ 562
Query: 293 LLSKTSRRSCPLSLGKILKLRLEPHSHSLGLTIGRLCEKCDGKCVICDSYVRPCTLVRIC 352
+ + + +SCP G+++K R G+ + C++Y + C ++
Sbjct: 563 KVHEKTGQSCPKCGGELVKKN------------SRY-----GEFIACNNYPK-CKYIKQT 604
Query: 353 DECNYGSYQGRCVICGGPGV 372
+ N + Q C CGG V
Sbjct: 605 ENANDEAKQELCEKCGGEMV 624
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 176,917,544
Number of Sequences: 539616
Number of extensions: 7606348
Number of successful extensions: 14904
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 14873
Number of HSP's gapped (non-prelim): 43
length of query: 463
length of database: 191,569,459
effective HSP length: 121
effective length of query: 342
effective length of database: 126,275,923
effective search space: 43186365666
effective search space used: 43186365666
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)