Query psy7787
Match_columns 463
No_of_seqs 137 out of 162
Neff 1.8
Searched_HMMs 29240
Date Fri Aug 16 18:50:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7787.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7787hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k0a_A PRE-mRNA-splicing facto 100.0 1.1E-45 3.9E-50 312.6 1.4 84 1-84 3-92 (109)
2 2k0a_A PRE-mRNA-splicing facto 100.0 1.4E-42 4.7E-47 293.9 0.0 90 317-408 13-103 (109)
3 2jrp_A Putative cytoplasmic pr 87.5 0.55 1.9E-05 38.2 4.1 53 336-411 21-73 (81)
4 2jrp_A Putative cytoplasmic pr 79.5 1.3 4.3E-05 36.1 3.1 50 25-97 21-70 (81)
5 2jne_A Hypothetical protein YF 64.5 1.6 5.6E-05 37.1 0.4 41 348-408 60-100 (101)
6 2ctt_A DNAJ homolog subfamily 57.6 5.2 0.00018 31.5 2.2 49 16-71 29-88 (104)
7 2jne_A Hypothetical protein YF 56.2 2.3 7.8E-05 36.2 -0.1 60 23-96 33-99 (101)
8 2xb1_A Pygopus homolog 2, B-ce 48.7 7.6 0.00026 31.5 1.9 47 24-73 5-61 (105)
9 2fiy_A Protein FDHE homolog; F 45.4 7 0.00024 37.3 1.4 38 22-59 182-231 (309)
10 2xb1_A Pygopus homolog 2, B-ce 44.2 9.4 0.00032 31.0 1.7 47 335-384 5-61 (105)
11 2fiy_A Protein FDHE homolog; F 40.7 11 0.00037 36.0 1.8 38 333-370 182-231 (309)
12 1wev_A Riken cDNA 1110020M19; 38.5 30 0.001 27.1 3.8 57 333-393 16-81 (88)
13 1wev_A Riken cDNA 1110020M19; 34.5 40 0.0014 26.4 3.9 56 22-81 16-80 (88)
14 3ql9_A Transcriptional regulat 33.0 4.7 0.00016 34.6 -1.7 45 335-381 10-75 (129)
15 2dkt_A Ring finger and CHY zin 32.0 19 0.00064 31.7 1.8 41 343-385 52-93 (143)
16 2apo_B Ribosome biogenesis pro 30.7 15 0.00052 28.3 0.9 27 36-62 4-30 (60)
17 2akl_A PHNA-like protein PA012 30.6 14 0.00049 32.8 0.8 27 23-49 28-55 (138)
18 3ql9_A Transcriptional regulat 29.8 5.8 0.0002 34.1 -1.8 43 24-68 10-73 (129)
19 2apo_B Ribosome biogenesis pro 29.4 17 0.00058 28.1 1.0 26 347-372 4-29 (60)
20 3pwf_A Rubrerythrin; non heme 28.7 19 0.00065 31.3 1.3 24 347-370 136-162 (170)
21 1pft_A TFIIB, PFTFIIBN; N-term 28.4 24 0.00082 24.6 1.5 23 335-357 7-32 (50)
22 2dkt_A Ring finger and CHY zin 28.1 22 0.00074 31.3 1.5 41 32-74 52-93 (143)
23 1we9_A PHD finger family prote 27.8 30 0.001 24.9 2.0 49 334-383 7-57 (64)
24 3pwf_A Rubrerythrin; non heme 27.7 20 0.00069 31.2 1.3 26 34-59 134-162 (170)
25 1exk_A DNAJ protein; extended 27.2 31 0.0011 25.3 2.1 48 327-381 12-70 (79)
26 1we9_A PHD finger family prote 26.2 42 0.0014 24.2 2.5 49 23-72 7-57 (64)
27 2lv9_A Histone-lysine N-methyl 25.9 21 0.00072 28.4 1.0 46 335-383 30-75 (98)
28 2egq_A FHL1 protein; LIM domai 25.4 31 0.0011 24.7 1.7 18 328-345 5-27 (77)
29 2aus_D NOP10, ribosome biogene 25.2 15 0.00052 28.4 0.0 27 36-62 3-29 (60)
30 1wew_A DNA-binding family prot 24.9 32 0.0011 26.1 1.8 53 24-79 18-78 (78)
31 2lbm_A Transcriptional regulat 24.7 8.8 0.0003 33.4 -1.6 60 318-379 6-79 (142)
32 2aus_D NOP10, ribosome biogene 24.6 17 0.00057 28.2 0.1 26 347-372 3-28 (60)
33 2yqq_A Zinc finger HIT domain- 23.2 16 0.00054 27.8 -0.2 36 350-394 13-49 (56)
34 2ehe_A Four and A half LIM dom 21.5 46 0.0016 24.1 2.0 13 334-346 16-28 (82)
35 2lbm_A Transcriptional regulat 21.4 11 0.00039 32.7 -1.5 34 33-68 35-79 (142)
36 2yqq_A Zinc finger HIT domain- 21.2 18 0.00062 27.5 -0.3 37 39-83 13-49 (56)
37 2yt5_A Metal-response element- 21.0 1.1E+02 0.0037 22.0 3.9 51 333-387 6-64 (66)
38 3j20_Y 30S ribosomal protein S 20.2 32 0.0011 25.1 0.9 24 336-359 22-47 (50)
No 1
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-45 Score=312.65 Aligned_cols=84 Identities=43% Similarity=0.885 Sum_probs=82.0
Q ss_pred CCCCCCcccc-----hhhhhhccccCCCccccccCCCCccceeEecCCCCCCCcCCeeEEeC-CCCccccccchhhhhcc
Q psy7787 1 MELFHPTIFH-----ISAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICG-GPGVSDAYYCKECTIQE 74 (463)
Q Consensus 1 MSRHqpDLIm-----Gt~IGrLCeKCDGKCPICDSyVRP~tkVRICDeCSfGs~~~RCIICG-~pGvsDAYYC~ECv~LE 74 (463)
|||||||||| |++||+||+|||||||||||||||+++||||||||||++++|||||| ++|++|||||+||++||
T Consensus 3 MsrH~~DLimC~KqpG~~iG~lCekcdGkC~iCDs~Vrp~~~VrICdeCs~G~~~~rCIiCg~~~g~~dAYYC~eC~~lE 82 (109)
T 2k0a_A 3 SSRHQFDLIMCLKQPGVQTGLLCEKCDGKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWECCRLG 82 (109)
T ss_dssp SSSCCTTCCBCCCCEEEEECEECGGGTTCCTTTCCCCCCCEECEEEHHHHTSSTTSBCTTTSSSBCCEECEECHHHHHHT
T ss_pred ccccCchhhhccCCCcchhhhhhhhcCCcccccCCccCCcceEEECCcCCCCCcCCceEEcCCCCCcccceehHhhhhhh
Confidence 9999999999 99999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred cccCCCccce
Q psy7787 75 KDVSTVEPQF 84 (463)
Q Consensus 75 KDRDGc~~~~ 84 (463)
|||||||.-.
T Consensus 83 KDRDGCPrii 92 (109)
T 2k0a_A 83 KDKDGCPRIL 92 (109)
T ss_dssp STTSCCCCBC
T ss_pred ccccCCCeeE
Confidence 9999999643
No 2
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-42 Score=293.88 Aligned_cols=90 Identities=46% Similarity=0.969 Sum_probs=85.0
Q ss_pred CCCCCcchhccccccCCCccccccCCCCccceeEecCCCCCCCcCCeeEEeC-CCCccccccchhhhhccccccccccee
Q psy7787 317 HSHSLGLTIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICG-GPGVSDAYYCKECTIQEKDVSTVEPQF 395 (463)
Q Consensus 317 ~~~~PGt~IGrLCeKCDGKCPICDSyVRP~tkVRICdeCSfGs~~~RCIICG-~pGvsdAYYC~ECvrLEKDRD~c~~~~ 395 (463)
=+||||++||+||+|||||||||||||||+++|||||+||||++++|||||| ++|++|||||+||++||||||+| |.+
T Consensus 13 C~KqpG~~iG~lCekcdGkC~iCDs~Vrp~~~VrICdeCs~G~~~~rCIiCg~~~g~~dAYYC~eC~~lEKDRDGC-Pri 91 (109)
T 2k0a_A 13 CLKQPGVQTGLLCEKCDGKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWECCRLGKDKDGC-PRI 91 (109)
T ss_dssp CCCCEEEEECEECGGGTTCCTTTCCCCCCCEECEEEHHHHTSSTTSBCTTTSSSBCCEECEECHHHHHHTSTTSCC-CCB
T ss_pred ccCCCcchhhhhhhhcCCcccccCCccCCcceEEECCcCCCCCcCCceEEcCCCCCcccceehHhhhhhhccccCC-Cee
Confidence 4899999999999999999999999999999999999999999999999999 89999999999999999999999 999
Q ss_pred eeeccccceeEEe
Q psy7787 396 YELIGTKGCSIVF 408 (463)
Q Consensus 396 ~~l~~~~~~s~~~ 408 (463)
+|+ |+.+...-|
T Consensus 92 iN~-Gs~ktD~~y 103 (109)
T 2k0a_A 92 LNL-GSNRLDRHF 103 (109)
T ss_dssp CSC-SSCSSTTCC
T ss_pred Eec-CcchhhHHh
Confidence 999 777665433
No 3
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=87.49 E-value=0.55 Score=38.19 Aligned_cols=53 Identities=23% Similarity=0.545 Sum_probs=33.3
Q ss_pred cccccCCCCccceeEecCCCCCCCcCCeeEEeCCCCccccccchhhhhcccccccccceeeeeccccceeEEeecc
Q psy7787 336 CVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDVSTVEPQFYELIGTKGCSIVFQKN 411 (463)
Q Consensus 336 CPICDSyVRP~tkVRICdeCSfGs~~~RCIICG~pGvsdAYYC~ECvrLEKDRD~c~~~~~~l~~~~~~s~~~~~~ 411 (463)
|.-|++.+.+.. .|.+|..-- .+|--||+ ..|+|.+|- +||+.+|..|+++..
T Consensus 21 C~~C~~~~~~~a---fCPeCgq~L--e~lkACGA----~~yFC~~C~--------------~LiSkkrv~f~~~~~ 73 (81)
T 2jrp_A 21 CETCAKDFSLQA---LCPDCRQPL--QVLKACGA----VDYFCQNGH--------------GLISKKRVNFVISDQ 73 (81)
T ss_dssp CTTTCCEEEEEE---ECSSSCSCC--CEEEETTE----EEECCTTTT--------------CCCCTTSSEEEECCS
T ss_pred CccccccCCCcc---cCcchhhHH--HHHHhcCC----cCeeeccCC--------------CEeecceEEEEecch
Confidence 455555444332 666665433 44777775 289999884 578888887777643
No 4
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=79.49 E-value=1.3 Score=36.06 Aligned_cols=50 Identities=22% Similarity=0.532 Sum_probs=30.0
Q ss_pred cccccCCCCccceeEecCCCCCCCcCCeeEEeCCCCccccccchhhhhcccccCCCccceeEeeccccceecc
Q psy7787 25 CVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDVSTVEPQFYELIGTKGLCLST 97 (463)
Q Consensus 25 CPICDSyVRP~tkVRICDeCSfGs~~~RCIICG~pGvsDAYYC~ECv~LEKDRDGc~~~~yel~~~~~l~~s~ 97 (463)
|.-|++.+.+.. .|.+|+.- -.+|--||+ ..|+|.+|- ||||.+|+.|..
T Consensus 21 C~~C~~~~~~~a---fCPeCgq~--Le~lkACGA----~~yFC~~C~--------------~LiSkkrv~f~~ 70 (81)
T 2jrp_A 21 CETCAKDFSLQA---LCPDCRQP--LQVLKACGA----VDYFCQNGH--------------GLISKKRVNFVI 70 (81)
T ss_dssp CTTTCCEEEEEE---ECSSSCSC--CCEEEETTE----EEECCTTTT--------------CCCCTTSSEEEE
T ss_pred CccccccCCCcc---cCcchhhH--HHHHHhcCC----cCeeeccCC--------------CEeecceEEEEe
Confidence 444554443322 56666443 334666765 289999883 678888876654
No 5
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=64.52 E-value=1.6 Score=37.06 Aligned_cols=41 Identities=24% Similarity=0.598 Sum_probs=23.0
Q ss_pred eeEecCCCCCCCcCCeeEEeCCCCccccccchhhhhcccccccccceeeeeccccceeEEe
Q psy7787 348 LVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDVSTVEPQFYELIGTKGCSIVF 408 (463)
Q Consensus 348 kVRICdeCSfGs~~~RCIICG~pGvsdAYYC~ECvrLEKDRD~c~~~~~~l~~~~~~s~~~ 408 (463)
++-.|.+|..- -.+.--||+ .-|.|..|- +||+.++..|.|
T Consensus 60 ~~a~CPdC~q~--LevLkACGA----vdYFC~~ch--------------gLiSKkRV~F~~ 100 (101)
T 2jne_A 60 MKALCPDCHQP--LQVLKACGA----VDYFCQHGH--------------GLISKKRVEFVL 100 (101)
T ss_dssp EEEECTTTCSB--CEEEEETTE----EEEEETTTT--------------EEECTTTSEEEE
T ss_pred ccccCcchhhH--HHHHHHhcC----cchhhccCC--------------ceeecceEEEEe
Confidence 44445555432 234444553 458887763 677777776654
No 6
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.65 E-value=5.2 Score=31.50 Aligned_cols=49 Identities=39% Similarity=0.792 Sum_probs=31.6
Q ss_pred hccccCCCccccccCCCCccceeEecCCCCCCCc-----------CCeeEEeCCCCccccccchhhh
Q psy7787 16 RLCEKCDGKCVICDSYVRPCTLVRICDECNYGSY-----------QGRCVICGGPGVSDAYYCKECT 71 (463)
Q Consensus 16 rLCeKCDGKCPICDSyVRP~tkVRICDeCSfGs~-----------~~RCIICG~pGvsDAYYC~ECv 71 (463)
..|+.|+|.= .+|-+..+.|..|+ |+. +..|-.|++.|..-.--|..|-
T Consensus 29 ~~C~~C~G~G------~~~g~~~~~C~~C~-G~G~~~~~~G~~~~~~~C~~C~G~G~~i~~~C~~C~ 88 (104)
T 2ctt_A 29 DTCERCNGKG------NEPGTKVQHCHYCG-GSGMETINTGPFVMRSTCRRCGGRGSIIISPCVVCR 88 (104)
T ss_dssp EECSSSSSSS------SCTTCCCEECSSSS-SSCEEEEEETTEEEEEECSSSSSSSEECSSCCSSSS
T ss_pred eECCCCcCCc------cCCCCCCccCCCCC-CCEEEEEEeCCEEEEEECCcCCCcceECCCcCCCCC
Confidence 4688888752 24555667777776 332 2467778877766556677774
No 7
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=56.22 E-value=2.3 Score=36.17 Aligned_cols=60 Identities=20% Similarity=0.343 Sum_probs=32.4
Q ss_pred CccccccCCCCccceeEecCCCCCCCc-CCeeEEeCCCC------ccccccchhhhhcccccCCCccceeEeecccccee
Q psy7787 23 GKCVICDSYVRPCTLVRICDECNYGSY-QGRCVICGGPG------VSDAYYCKECTIQEKDVSTVEPQFYELIGTKGLCL 95 (463)
Q Consensus 23 GKCPICDSyVRP~tkVRICDeCSfGs~-~~RCIICG~pG------vsDAYYC~ECv~LEKDRDGc~~~~yel~~~~~l~~ 95 (463)
-.||.|...+.+......|+.|.---. ...|.-|+.|- ...-|.|..|- ||||.+|+.|
T Consensus 33 ~~CP~Cq~eL~~~g~~~hC~~C~~~f~~~a~CPdC~q~LevLkACGAvdYFC~~ch--------------gLiSKkRV~F 98 (101)
T 2jne_A 33 LHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHGH--------------GLISKKRVEF 98 (101)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCEEEEETTEEEEEETTTT--------------EEECTTTSEE
T ss_pred ccCccCCCcceecCCEEECccccchhhccccCcchhhHHHHHHHhcCcchhhccCC--------------ceeecceEEE
Confidence 455666655544444444555543211 33444444331 12469998873 7888888766
Q ss_pred c
Q psy7787 96 S 96 (463)
Q Consensus 96 s 96 (463)
.
T Consensus 99 ~ 99 (101)
T 2jne_A 99 V 99 (101)
T ss_dssp E
T ss_pred E
Confidence 4
No 8
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=48.66 E-value=7.6 Score=31.51 Aligned_cols=47 Identities=23% Similarity=0.546 Sum_probs=34.4
Q ss_pred ccccccCCCCccceeEecC-CCCCCCcCCeeEEeCCCC---------ccccccchhhhhc
Q psy7787 24 KCVICDSYVRPCTLVRICD-ECNYGSYQGRCVICGGPG---------VSDAYYCKECTIQ 73 (463)
Q Consensus 24 KCPICDSyVRP~tkVRICD-eCSfGs~~~RCIICG~pG---------vsDAYYC~ECv~L 73 (463)
.|++|.....+...--+|| .|. .-+-..|| |... ..+.|||..|...
T Consensus 5 ~C~iC~~p~~~~~~mi~Cdd~C~-~WfH~~CV--glt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 5 PCGACRSEVNDDQDAILCEASCQ-KWFHRECT--GMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp BCTTTCSBCCTTSCEEECTTTTC-CEEEGGGT--TCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCccCCCCCEEEecCCcc-cccccccC--CcCHHHHHhhccCCCCCEECccccCc
Confidence 5899998888877788998 896 55667776 2221 1268999999764
No 9
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=45.39 E-value=7 Score=37.26 Aligned_cols=38 Identities=21% Similarity=0.405 Sum_probs=28.7
Q ss_pred CCccccccCC-----CCc-----cceeEecCCCCCCC--cCCeeEEeCCC
Q psy7787 22 DGKCVICDSY-----VRP-----CTLVRICDECNYGS--YQGRCVICGGP 59 (463)
Q Consensus 22 DGKCPICDSy-----VRP-----~tkVRICDeCSfGs--~~~RCIICG~p 59 (463)
.|.||+|.|. |+. -.+.-.|..|++.- .+.+|..||+.
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 6999999986 442 23567899999743 37799999974
No 10
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=44.18 E-value=9.4 Score=30.97 Aligned_cols=47 Identities=23% Similarity=0.546 Sum_probs=34.0
Q ss_pred ccccccCCCCccceeEecC-CCCCCCcCCeeEEeCCCC---------ccccccchhhhhc
Q psy7787 335 KCVICDSYVRPCTLVRICD-ECNYGSYQGRCVICGGPG---------VSDAYYCKECTIQ 384 (463)
Q Consensus 335 KCPICDSyVRP~tkVRICd-eCSfGs~~~RCIICG~pG---------vsdAYYC~ECvrL 384 (463)
.|++|.....+...--+|| .|. .-+-..|+ |... ..+.|+|..|...
T Consensus 5 ~C~iC~~p~~~~~~mi~Cdd~C~-~WfH~~CV--glt~~~~~~i~~~~~~~~~Cp~C~~~ 61 (105)
T 2xb1_A 5 PCGACRSEVNDDQDAILCEASCQ-KWFHRECT--GMTESAYGLLTTEASAVWACDLCLKT 61 (105)
T ss_dssp BCTTTCSBCCTTSCEEECTTTTC-CEEEGGGT--TCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred CCCCCCCccCCCCCEEEecCCcc-cccccccC--CcCHHHHHhhccCCCCCEECccccCc
Confidence 5899999888877888998 896 55566666 3211 1268999999754
No 11
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=40.66 E-value=11 Score=35.98 Aligned_cols=38 Identities=21% Similarity=0.418 Sum_probs=27.2
Q ss_pred CCccccccCC-----CCc-----cceeEecCCCCCC--CcCCeeEEeCCC
Q psy7787 333 DGKCVICDSY-----VRP-----CTLVRICDECNYG--SYQGRCVICGGP 370 (463)
Q Consensus 333 DGKCPICDSy-----VRP-----~tkVRICdeCSfG--s~~~RCIICG~p 370 (463)
.|.||+|.|. |+. -.+.-.|..|++. ....+|..||+.
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 5889999876 442 2356788888864 447789999873
No 12
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=38.53 E-value=30 Score=27.07 Aligned_cols=57 Identities=28% Similarity=0.558 Sum_probs=40.9
Q ss_pred CCccccccCCCCc-cceeEecCCCCCCCcCCeeEEeCCCCcc--------ccccchhhhhcccccccccc
Q psy7787 333 DGKCVICDSYVRP-CTLVRICDECNYGSYQGRCVICGGPGVS--------DAYYCKECTIQEKDVSTVEP 393 (463)
Q Consensus 333 DGKCPICDSyVRP-~tkVRICdeCSfGs~~~RCIICG~pGvs--------dAYYC~ECvrLEKDRD~c~~ 393 (463)
+-.|.+|...-.+ ....-+||.|..+--.. |=.|... .-.||..|....+.++.-++
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~----Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~~~~~ 81 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQD----CHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQKNQ 81 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETT----TSSSCCCHHHHHCTTCCCCCHHHHHHHCCSTTCCC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCc----cCCCcccccccCCCCCCeeCccccchhhhhccccC
Confidence 4568888866443 56788999999775444 6666543 36999999998887776543
No 13
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=34.54 E-value=40 Score=26.40 Aligned_cols=56 Identities=29% Similarity=0.569 Sum_probs=39.9
Q ss_pred CCccccccCCCCc-cceeEecCCCCCCCcCCeeEEeCCCCcc--------ccccchhhhhcccccCCCc
Q psy7787 22 DGKCVICDSYVRP-CTLVRICDECNYGSYQGRCVICGGPGVS--------DAYYCKECTIQEKDVSTVE 81 (463)
Q Consensus 22 DGKCPICDSyVRP-~tkVRICDeCSfGs~~~RCIICG~pGvs--------DAYYC~ECv~LEKDRDGc~ 81 (463)
+-.|.+|...-.+ ....-+||.|..+--+. |=.|... .-.||..|....+.++-.+
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~----Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~~~~~ 80 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQD----CHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQKN 80 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETT----TSSSCCCHHHHHCTTCCCCCHHHHHHHCCSTTCC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCc----cCCCcccccccCCCCCCeeCccccchhhhhcccc
Confidence 4568888876443 56788999999876555 6566433 3689999998888766443
No 14
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=33.04 E-value=4.7 Score=34.62 Aligned_cols=45 Identities=27% Similarity=0.677 Sum_probs=29.3
Q ss_pred ccccccCCC----------CccceeEecCCCCC-----------CCcCCeeEEeCCCCccccccchhh
Q psy7787 335 KCVICDSYV----------RPCTLVRICDECNY-----------GSYQGRCVICGGPGVSDAYYCKEC 381 (463)
Q Consensus 335 KCPICDSyV----------RP~tkVRICdeCSf-----------Gs~~~RCIICG~pGvsdAYYC~EC 381 (463)
+|-.|++.+ .|.-+|-+|..|.. ..+++.|-+|+. ..+.+.|..|
T Consensus 10 ~Ct~Cg~~~~~~~~~~~~~HPll~v~~C~~C~~~y~~~~~~~d~Dg~~~~C~vC~d--GG~LlcCd~C 75 (129)
T 3ql9_A 10 SCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAE--GGNLICCDFC 75 (129)
T ss_dssp BCTTTCCBCCCCBTTTEEECTTTCCEEEHHHHHHHHHSCCCBCTTSCBSSCTTTCC--CSEEEECSSS
T ss_pred EeccCCCCCcccCCCccccCCCcCceeCHhHHhhhhccccccCCCCCCCcCeecCC--CCeeEecCCC
Confidence 466666555 36667888888875 344667888886 3456666443
No 15
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=31.97 E-value=19 Score=31.73 Aligned_cols=41 Identities=24% Similarity=0.450 Sum_probs=32.8
Q ss_pred CCccceeEecCCCCCC-CcCCeeEEeCCCCccccccchhhhhcc
Q psy7787 343 VRPCTLVRICDECNYG-SYQGRCVICGGPGVSDAYYCKECTIQE 385 (463)
Q Consensus 343 VRP~tkVRICdeCSfG-s~~~RCIICG~pGvsdAYYC~ECvrLE 385 (463)
.|..++.-+|-.|+.- ..++.|+-||. ..+.|||..|-...
T Consensus 52 ~r~~~~~vlCg~C~~~q~~~~~C~~Cg~--~f~~Y~C~~C~l~d 93 (143)
T 2dkt_A 52 DRFKVKEVQCINCEKLQHAQQTCEDCST--LFGEYYCSICHLFD 93 (143)
T ss_dssp CSSSCCCEEESSSCCEECSCSBCSSSCC--BSCSEECSSSCCEE
T ss_pred chhccceeeecccCccccccCcCCCCCc--cceeeEeceeeccc
Confidence 3456778899999963 45679999997 78899999997774
No 16
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=30.74 E-value=15 Score=28.33 Aligned_cols=27 Identities=22% Similarity=0.543 Sum_probs=22.0
Q ss_pred ceeEecCCCCCCCcCCeeEEeCCCCcc
Q psy7787 36 TLVRICDECNYGSYQGRCVICGGPGVS 62 (463)
Q Consensus 36 tkVRICDeCSfGs~~~RCIICG~pGvs 62 (463)
.+.+.|..|..=+..+.|..||.+..+
T Consensus 4 s~mr~C~~CgvYTLk~~CP~CG~~T~~ 30 (60)
T 2apo_B 4 MRMKKCPKCGLYTLKEICPKCGEKTVI 30 (60)
T ss_dssp CCCEECTTTCCEESSSBCSSSCSBCBC
T ss_pred hhceeCCCCCCEeccccCcCCCCcCCC
Confidence 367889999888889999999987443
No 17
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=30.62 E-value=14 Score=32.78 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=21.8
Q ss_pred CccccccC-CCCccceeEecCCCCCCCc
Q psy7787 23 GKCVICDS-YVRPCTLVRICDECNYGSY 49 (463)
Q Consensus 23 GKCPICDS-yVRP~tkVRICDeCSfGs~ 49 (463)
-.||-|.| |+-+.....||.||++--.
T Consensus 28 P~CP~C~seytYeDg~l~vCPeC~hEW~ 55 (138)
T 2akl_A 28 PPCPQCNSEYTYEDGALLVCPECAHEWS 55 (138)
T ss_dssp CCCTTTCCCCCEECSSSEEETTTTEEEC
T ss_pred CCCCCCCCcceEecCCeEECCccccccC
Confidence 67999998 5667777799999998653
No 18
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=29.82 E-value=5.8 Score=34.10 Aligned_cols=43 Identities=26% Similarity=0.663 Sum_probs=29.4
Q ss_pred ccccccCCC----------CccceeEecCCCCC-----------CCcCCeeEEeCCCCccccccch
Q psy7787 24 KCVICDSYV----------RPCTLVRICDECNY-----------GSYQGRCVICGGPGVSDAYYCK 68 (463)
Q Consensus 24 KCPICDSyV----------RP~tkVRICDeCSf-----------Gs~~~RCIICG~pGvsDAYYC~ 68 (463)
+|-.|++.+ .|.-+|-+|..|.. ..+++.|-+|+.. .+.+.|.
T Consensus 10 ~Ct~Cg~~~~~~~~~~~~~HPll~v~~C~~C~~~y~~~~~~~d~Dg~~~~C~vC~dG--G~LlcCd 73 (129)
T 3ql9_A 10 SCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEG--GNLICCD 73 (129)
T ss_dssp BCTTTCCBCCCCBTTTEEECTTTCCEEEHHHHHHHHHSCCCBCTTSCBSSCTTTCCC--SEEEECS
T ss_pred EeccCCCCCcccCCCccccCCCcCceeCHhHHhhhhccccccCCCCCCCcCeecCCC--CeeEecC
Confidence 466666655 47778999999975 3446678888863 4466663
No 19
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=29.37 E-value=17 Score=28.06 Aligned_cols=26 Identities=23% Similarity=0.586 Sum_probs=21.4
Q ss_pred ceeEecCCCCCCCcCCeeEEeCCCCc
Q psy7787 347 TLVRICDECNYGSYQGRCVICGGPGV 372 (463)
Q Consensus 347 tkVRICdeCSfGs~~~RCIICG~pGv 372 (463)
.+.+.|..|.-=++.+.|..||.+..
T Consensus 4 s~mr~C~~CgvYTLk~~CP~CG~~T~ 29 (60)
T 2apo_B 4 MRMKKCPKCGLYTLKEICPKCGEKTV 29 (60)
T ss_dssp CCCEECTTTCCEESSSBCSSSCSBCB
T ss_pred hhceeCCCCCCEeccccCcCCCCcCC
Confidence 46788999988888999999997544
No 20
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=28.68 E-value=19 Score=31.32 Aligned_cols=24 Identities=38% Similarity=0.912 Sum_probs=15.1
Q ss_pred ceeEecCCCCC---CCcCCeeEEeCCC
Q psy7787 347 TLVRICDECNY---GSYQGRCVICGGP 370 (463)
Q Consensus 347 tkVRICdeCSf---Gs~~~RCIICG~p 370 (463)
..+++|..|+| +..-+.|.+||.|
T Consensus 136 ~~~~~C~~CG~i~~~~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 136 KKVYICPICGYTAVDEAPEYCPVCGAP 162 (170)
T ss_dssp SCEEECTTTCCEEESCCCSBCTTTCCB
T ss_pred CCeeEeCCCCCeeCCCCCCCCCCCCCC
Confidence 35566777766 3344578888853
No 21
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=28.44 E-value=24 Score=24.64 Aligned_cols=23 Identities=30% Similarity=0.772 Sum_probs=16.1
Q ss_pred ccccccC-CC--CccceeEecCCCCC
Q psy7787 335 KCVICDS-YV--RPCTLVRICDECNY 357 (463)
Q Consensus 335 KCPICDS-yV--RP~tkVRICdeCSf 357 (463)
+||.|.+ .+ .+.+-..||..|+.
T Consensus 7 ~CP~C~~~~l~~d~~~gelvC~~CG~ 32 (50)
T 1pft_A 7 VCPACESAELIYDPERGEIVCAKCGY 32 (50)
T ss_dssp SCTTTSCCCEEEETTTTEEEESSSCC
T ss_pred eCcCCCCcceEEcCCCCeEECcccCC
Confidence 5788876 43 35666788988876
No 22
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=28.08 E-value=22 Score=31.33 Aligned_cols=41 Identities=24% Similarity=0.450 Sum_probs=32.1
Q ss_pred CCccceeEecCCCCCC-CcCCeeEEeCCCCccccccchhhhhcc
Q psy7787 32 VRPCTLVRICDECNYG-SYQGRCVICGGPGVSDAYYCKECTIQE 74 (463)
Q Consensus 32 VRP~tkVRICDeCSfG-s~~~RCIICG~pGvsDAYYC~ECv~LE 74 (463)
.|..++.-+|-.|+.- ..++.|+-||. ..+.|||..|-...
T Consensus 52 ~r~~~~~vlCg~C~~~q~~~~~C~~Cg~--~f~~Y~C~~C~l~d 93 (143)
T 2dkt_A 52 DRFKVKEVQCINCEKLQHAQQTCEDCST--LFGEYYCSICHLFD 93 (143)
T ss_dssp CSSSCCCEEESSSCCEECSCSBCSSSCC--BSCSEECSSSCCEE
T ss_pred chhccceeeecccCccccccCcCCCCCc--cceeeEeceeeccc
Confidence 3446778899999963 33678999998 67799999998773
No 23
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=27.83 E-value=30 Score=24.93 Aligned_cols=49 Identities=24% Similarity=0.579 Sum_probs=32.0
Q ss_pred CccccccCCCCccceeEecCCCCCCCcCCeeEEeCCCCc--cccccchhhhh
Q psy7787 334 GKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGV--SDAYYCKECTI 383 (463)
Q Consensus 334 GKCPICDSyVRP~tkVRICdeCSfGs~~~RCIICG~pGv--sdAYYC~ECvr 383 (463)
-.|++|.....+...---||.|. --+..+|+-=..... .+.|+|..|..
T Consensus 7 ~~C~~C~~~~~~~~~mI~Cd~C~-~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 7 GQCGACGESYAADEFWICCDLCE-MWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CCCSSSCCCCCSSSCEEECSSSC-CEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCccCCCCCEEEccCCC-CCCCccccCcChhHhcCCCcEECCCCcC
Confidence 35889987766656666799997 444556662222222 36899999954
No 24
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=27.70 E-value=20 Score=31.17 Aligned_cols=26 Identities=35% Similarity=0.821 Sum_probs=19.8
Q ss_pred ccceeEecCCCCC---CCcCCeeEEeCCC
Q psy7787 34 PCTLVRICDECNY---GSYQGRCVICGGP 59 (463)
Q Consensus 34 P~tkVRICDeCSf---Gs~~~RCIICG~p 59 (463)
+...+.+|..|+| +..-+.|.+||.|
T Consensus 134 ~~~~~~~C~~CG~i~~~~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 134 EIKKVYICPICGYTAVDEAPEYCPVCGAP 162 (170)
T ss_dssp CCSCEEECTTTCCEEESCCCSBCTTTCCB
T ss_pred CCCCeeEeCCCCCeeCCCCCCCCCCCCCC
Confidence 3457899999998 3445689999875
No 25
>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1
Probab=27.23 E-value=31 Score=25.31 Aligned_cols=48 Identities=33% Similarity=0.749 Sum_probs=25.7
Q ss_pred cccccCCCccccccCCCCccceeEecCCCCCCCc-----------CCeeEEeCCCCccccccchhh
Q psy7787 327 RLCEKCDGKCVICDSYVRPCTLVRICDECNYGSY-----------QGRCVICGGPGVSDAYYCKEC 381 (463)
Q Consensus 327 rLCeKCDGKCPICDSyVRP~tkVRICdeCSfGs~-----------~~RCIICG~pGvsdAYYC~EC 381 (463)
..|+.|+|.=. .|.+....|+.|+ |+. +..|-.|++.|....-.|..|
T Consensus 12 ~~C~~C~G~G~------~~~~~~~~C~~C~-G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C 70 (79)
T 1exk_A 12 EECDVCHGSGA------KPGTQPQTCPTCH-GSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKC 70 (79)
T ss_dssp EECGGGTTTSB------CSSSCCEECTTTT-TSSEEEEEETTEEEEEECTTTTTSSEECSSBCGGG
T ss_pred eECCCCccccc------CCCccCCCCCCCc-CeEEEEEEcCCCEEeeECcCCCCccEECCCcCCCC
Confidence 46777776432 2333345566665 222 135666666665545556666
No 26
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=26.15 E-value=42 Score=24.17 Aligned_cols=49 Identities=24% Similarity=0.579 Sum_probs=32.6
Q ss_pred CccccccCCCCccceeEecCCCCCCCcCCeeEEeCCCCc--cccccchhhhh
Q psy7787 23 GKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGV--SDAYYCKECTI 72 (463)
Q Consensus 23 GKCPICDSyVRP~tkVRICDeCSfGs~~~RCIICG~pGv--sDAYYC~ECv~ 72 (463)
-.|++|.....+...---||.|. --+-.+|+-=....+ .+.|+|..|..
T Consensus 7 ~~C~~C~~~~~~~~~mI~Cd~C~-~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 57 (64)
T 1we9_A 7 GQCGACGESYAADEFWICCDLCE-MWFHGKCVKITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CCCSSSCCCCCSSSCEEECSSSC-CEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred CCCCCCCCccCCCCCEEEccCCC-CCCCccccCcChhHhcCCCcEECCCCcC
Confidence 46889987766655666799997 445667763222221 36899999964
No 27
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=25.94 E-value=21 Score=28.42 Aligned_cols=46 Identities=24% Similarity=0.595 Sum_probs=26.5
Q ss_pred ccccccCCCCccceeEecCCCCCCCcCCeeEEeCCCCccccccchhhhh
Q psy7787 335 KCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTI 383 (463)
Q Consensus 335 KCPICDSyVRP~tkVRICdeCSfGs~~~RCIICG~pGvsdAYYC~ECvr 383 (463)
+| ||...-.. ...-.||.|.-. +-..|+.=....+.+.|||..|..
T Consensus 30 rC-iC~~~~~~-~~mi~Cd~C~~w-~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 30 RC-ICGFTHDD-GYMICCDKCSVW-QHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp CC-TTSCCSCS-SCEEEBTTTCBE-EETTTTTCCTTSCCSSBCCTTTSS
T ss_pred Ee-ECCCccCC-CcEEEcCCCCCc-CcCcCCCCCccCCCCCEECCCCcC
Confidence 45 56554332 345679999753 344555222233446799999953
No 28
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=25.41 E-value=31 Score=24.68 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=12.1
Q ss_pred ccccCC-----CccccccCCCCc
Q psy7787 328 LCEKCD-----GKCVICDSYVRP 345 (463)
Q Consensus 328 LCeKCD-----GKCPICDSyVRP 345 (463)
.|..|- .+|+.|...|.|
T Consensus 5 yC~~cy~~~~~~~C~~C~~~I~~ 27 (77)
T 2egq_A 5 SSGDCYKNFVAKKCAGCKNPITG 27 (77)
T ss_dssp CCTTCCCSCCCCCCSSSCCCCCC
T ss_pred EchhHhchhhCccCcccCCcccC
Confidence 455553 468888888876
No 29
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=25.20 E-value=15 Score=28.40 Aligned_cols=27 Identities=22% Similarity=0.582 Sum_probs=21.4
Q ss_pred ceeEecCCCCCCCcCCeeEEeCCCCcc
Q psy7787 36 TLVRICDECNYGSYQGRCVICGGPGVS 62 (463)
Q Consensus 36 tkVRICDeCSfGs~~~RCIICG~pGvs 62 (463)
.+.|.|..|+.-...+.|..||.+..+
T Consensus 3 s~mr~C~~Cg~YTLk~~CP~CG~~t~~ 29 (60)
T 2aus_D 3 FRIRKCPKCGRYTLKETCPVCGEKTKV 29 (60)
T ss_dssp -CCEECTTTCCEESSSBCTTTCSBCEE
T ss_pred ccceECCCCCCEEccccCcCCCCccCC
Confidence 467899999888888999999987443
No 30
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=24.86 E-value=32 Score=26.14 Aligned_cols=53 Identities=21% Similarity=0.587 Sum_probs=33.1
Q ss_pred ccccccCCCCccceeEecC--CCCCCCcCCeeEEeCCC------CccccccchhhhhcccccCC
Q psy7787 24 KCVICDSYVRPCTLVRICD--ECNYGSYQGRCVICGGP------GVSDAYYCKECTIQEKDVST 79 (463)
Q Consensus 24 KCPICDSyVRP~tkVRICD--eCSfGs~~~RCIICG~p------GvsDAYYC~ECv~LEKDRDG 79 (463)
+| ||... .+...---|| .|.. -+..+||-=... ...+.|||..|....++..|
T Consensus 18 ~C-iC~~~-~~~g~MI~CD~~~C~~-W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~~s~ 78 (78)
T 1wew_A 18 RC-VCGNS-LETDSMIQCEDPRCHV-WQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGPSSG 78 (78)
T ss_dssp CC-SSCCC-CCCSCEEECSSTTTCC-EEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSCCCC
T ss_pred Ee-ECCCc-CCCCCEEEECCccCCc-cccCEEEccccccccccccCCCCEECCCCCcccCCCCC
Confidence 45 56655 2334555688 8876 566667632221 23468999999887776654
No 31
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=24.66 E-value=8.8 Score=33.37 Aligned_cols=60 Identities=23% Similarity=0.455 Sum_probs=35.8
Q ss_pred CCCCcchhccccccCCCcccc---ccCCCCccceeEecCCCCC-----------CCcCCeeEEeCCCCccccccch
Q psy7787 318 SHSLGLTIGRLCEKCDGKCVI---CDSYVRPCTLVRICDECNY-----------GSYQGRCVICGGPGVSDAYYCK 379 (463)
Q Consensus 318 ~~~PGt~IGrLCeKCDGKCPI---CDSyVRP~tkVRICdeCSf-----------Gs~~~RCIICG~pGvsdAYYC~ 379 (463)
++.+|..-+..|..|.-.=.- =.....|.-+|-+|..|.. ..+++.|-+|+.-| +-+.|.
T Consensus 6 ~~~~~~~~~i~Ct~Cg~~~~~~q~~~~~~HPll~v~~C~~C~~~y~~~~~~~d~Dg~~d~C~vC~~GG--~LlcCD 79 (142)
T 2lbm_A 6 KRGDGLHGIVSCTACGQQVNHFQKDSIYRHPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGG--NLICCD 79 (142)
T ss_dssp CSSSSCCCCCBCTTTCSBSTTTCSSSEEEETTTTEEEEHHHHHHHHHSCCCBCTTSCBCSCSSSCCCS--SEEECS
T ss_pred ccccCCcCCCEecCCCCccccccccchhcCCCccccccHHHHHHHhcCCceecCCCCCCeecccCCCC--cEEeCC
Confidence 344666666666655443100 0011257788999999985 44578899999744 344553
No 32
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=24.62 E-value=17 Score=28.22 Aligned_cols=26 Identities=23% Similarity=0.617 Sum_probs=20.8
Q ss_pred ceeEecCCCCCCCcCCeeEEeCCCCc
Q psy7787 347 TLVRICDECNYGSYQGRCVICGGPGV 372 (463)
Q Consensus 347 tkVRICdeCSfGs~~~RCIICG~pGv 372 (463)
.+.+.|..|+--.+.+.|..||.+..
T Consensus 3 s~mr~C~~Cg~YTLk~~CP~CG~~t~ 28 (60)
T 2aus_D 3 FRIRKCPKCGRYTLKETCPVCGEKTK 28 (60)
T ss_dssp -CCEECTTTCCEESSSBCTTTCSBCE
T ss_pred ccceECCCCCCEEccccCcCCCCccC
Confidence 46788999988888999999997543
No 33
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.20 E-value=16 Score=27.79 Aligned_cols=36 Identities=28% Similarity=0.594 Sum_probs=28.7
Q ss_pred EecCCCCCCCcCCeeEEeCCCCccccccc-hhhhhcccccccccce
Q psy7787 350 RICDECNYGSYQGRCVICGGPGVSDAYYC-KECTIQEKDVSTVEPQ 394 (463)
Q Consensus 350 RICdeCSfGs~~~RCIICG~pGvsdAYYC-~ECvrLEKDRD~c~~~ 394 (463)
.+|..|.. ...-+|.-|+. +|| .+|.+..|+. |+++
T Consensus 13 ~~C~vC~~-~~kY~CPrC~~------~yCSl~C~k~Hk~~--C~~~ 49 (56)
T 2yqq_A 13 VVCVICLE-KPKYRCPACRV------PYCSVVCFRKHKEQ--CNPE 49 (56)
T ss_dssp CCCTTTCS-CCSEECTTTCC------EESSHHHHHHHHHH--CCCC
T ss_pred CccCcCcC-CCeeeCCCCCC------CeeCHHHHHHHHhh--CcCC
Confidence 47999999 88889999985 555 5799999987 8654
No 34
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.47 E-value=46 Score=24.13 Aligned_cols=13 Identities=15% Similarity=0.508 Sum_probs=8.8
Q ss_pred CccccccCCCCcc
Q psy7787 334 GKCVICDSYVRPC 346 (463)
Q Consensus 334 GKCPICDSyVRP~ 346 (463)
.+|..|+..|.|.
T Consensus 16 ~~C~~C~~~I~~~ 28 (82)
T 2ehe_A 16 NTCAECQQLIGHD 28 (82)
T ss_dssp CBCTTTCCBCCSS
T ss_pred CcCccCCCccccC
Confidence 3577777777753
No 35
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=21.44 E-value=11 Score=32.70 Aligned_cols=34 Identities=26% Similarity=0.661 Sum_probs=24.9
Q ss_pred CccceeEecCCCCC-----------CCcCCeeEEeCCCCccccccch
Q psy7787 33 RPCTLVRICDECNY-----------GSYQGRCVICGGPGVSDAYYCK 68 (463)
Q Consensus 33 RP~tkVRICDeCSf-----------Gs~~~RCIICG~pGvsDAYYC~ 68 (463)
.|.-+|-+|..|.. ..++..|-+|+..| +-+.|.
T Consensus 35 HPll~v~~C~~C~~~y~~~~~~~d~Dg~~d~C~vC~~GG--~LlcCD 79 (142)
T 2lbm_A 35 HPSLQVLICKNCFKYYMSDDISRDSDGMDEQCRWCAEGG--NLICCD 79 (142)
T ss_dssp ETTTTEEEEHHHHHHHHHSCCCBCTTSCBCSCSSSCCCS--SEEECS
T ss_pred CCCccccccHHHHHHHhcCCceecCCCCCCeecccCCCC--cEEeCC
Confidence 57788999999985 44577899998754 345553
No 36
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.23 E-value=18 Score=27.49 Aligned_cols=37 Identities=24% Similarity=0.502 Sum_probs=28.5
Q ss_pred EecCCCCCCCcCCeeEEeCCCCccccccchhhhhcccccCCCccc
Q psy7787 39 RICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDVSTVEPQ 83 (463)
Q Consensus 39 RICDeCSfGs~~~RCIICG~pGvsDAYYC~ECv~LEKDRDGc~~~ 83 (463)
.+|..|+. ...-+|.-|+. .|...+|.+..|+. |+..
T Consensus 13 ~~C~vC~~-~~kY~CPrC~~-----~yCSl~C~k~Hk~~--C~~~ 49 (56)
T 2yqq_A 13 VVCVICLE-KPKYRCPACRV-----PYCSVVCFRKHKEQ--CNPE 49 (56)
T ss_dssp CCCTTTCS-CCSEECTTTCC-----EESSHHHHHHHHHH--CCCC
T ss_pred CccCcCcC-CCeeeCCCCCC-----CeeCHHHHHHHHhh--CcCC
Confidence 47999999 88889999975 45555799998886 5543
No 37
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=20.97 E-value=1.1e+02 Score=22.03 Aligned_cols=51 Identities=27% Similarity=0.722 Sum_probs=33.6
Q ss_pred CCccccccCCC-CccceeEecCCCCCCCcCCeeEEeCCCCc-------cccccchhhhhcccc
Q psy7787 333 DGKCVICDSYV-RPCTLVRICDECNYGSYQGRCVICGGPGV-------SDAYYCKECTIQEKD 387 (463)
Q Consensus 333 DGKCPICDSyV-RP~tkVRICdeCSfGs~~~RCIICG~pGv-------sdAYYC~ECvrLEKD 387 (463)
+-.|.+|...- ......-+||.|.-+--.. |=+|.. ....||..|....+-
T Consensus 6 ~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~----C~~p~l~~~~~~p~~~W~C~~C~~~~~~ 64 (66)
T 2yt5_A 6 SGVCTICQEEYSEAPNEMVICDKCGQGYHQL----CHTPHIDSSVIDSDEKWLCRQCVFATTT 64 (66)
T ss_dssp CCCBSSSCCCCCBTTBCEEECSSSCCEEETT----TSSSCCCHHHHHSSCCCCCHHHHHTTSC
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCChHHHhh----hCCCcccccccCCCCCEECCCCcCcccc
Confidence 45688888643 3467888999998663333 444432 347999999765543
No 38
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.24 E-value=32 Score=25.08 Aligned_cols=24 Identities=21% Similarity=0.632 Sum_probs=14.3
Q ss_pred cccccC--CCCccceeEecCCCCCCC
Q psy7787 336 CVICDS--YVRPCTLVRICDECNYGS 359 (463)
Q Consensus 336 CPICDS--yVRP~tkVRICdeCSfGs 359 (463)
||-|.+ +..+......|..|+|-.
T Consensus 22 CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 22 CPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp CSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred CCCCCCceEEecCCCeEECCCCCCEE
Confidence 455666 445555666777776643
Done!