Query psy7787
Match_columns 463
No_of_seqs 137 out of 162
Neff 1.8
Searched_HMMs 13730
Date Fri Aug 16 18:50:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7787.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7787hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yuza2 g.41.5.1 (A:167-202) N 66.6 0.96 7E-05 30.4 1.2 24 36-59 3-29 (36)
2 d2jnea1 g.41.18.1 (A:1-71) Hyp 64.9 0.86 6.2E-05 34.8 0.8 60 334-407 3-69 (71)
3 d2jnea1 g.41.18.1 (A:1-71) Hyp 62.2 0.84 6.1E-05 34.9 0.3 60 23-96 3-69 (71)
4 d1yuza2 g.41.5.1 (A:167-202) N 61.1 1.3 9.6E-05 29.7 1.1 25 347-371 3-30 (36)
5 d1nnqa2 g.41.5.1 (A:135-171) R 57.9 1.7 0.00012 29.2 1.1 25 347-371 3-30 (37)
6 d2fiya1 e.59.1.1 (A:19-308) Fd 56.5 2.3 0.00016 38.1 2.2 38 333-370 164-213 (290)
7 d2fiya1 e.59.1.1 (A:19-308) Fd 55.5 2.2 0.00016 38.2 1.9 58 22-79 164-256 (290)
8 d2akla2 g.41.3.5 (A:3-40) Hypo 44.5 3.2 0.00023 28.4 0.8 24 24-47 5-29 (38)
9 d1weva_ g.50.1.2 (A:) PHD fing 42.6 10 0.00074 27.1 3.5 49 24-76 18-75 (88)
10 d1weva_ g.50.1.2 (A:) PHD fing 37.9 13 0.00093 26.6 3.4 48 335-386 18-74 (88)
11 d1we9a_ g.50.1.2 (A:) PHD fing 37.1 9.5 0.00069 26.0 2.4 48 22-72 6-57 (64)
12 d1f62a_ g.50.1.2 (A:) Williams 34.2 7.6 0.00055 25.5 1.4 45 335-381 2-47 (51)
13 d1dl6a_ g.41.3.1 (A:) Transcri 28.3 15 0.0011 26.0 2.3 24 334-357 12-38 (58)
14 d1k3xa3 g.39.1.8 (A:223-262) E 28.0 6.2 0.00045 26.3 0.1 25 46-70 8-38 (40)
15 d1exka_ g.54.1.1 (A:) Cysteine 25.1 11 0.00079 27.0 1.0 47 17-70 13-70 (79)
16 d2ak3a2 g.41.2.1 (A:125-161) M 24.2 14 0.0011 24.4 1.4 18 298-316 1-18 (37)
17 d1v5na_ g.49.1.3 (A:) Pdi-like 23.7 7.4 0.00054 29.3 -0.2 21 50-70 47-67 (89)
18 d1v5na_ g.49.1.3 (A:) Pdi-like 23.6 7.6 0.00055 29.3 -0.1 20 362-381 48-67 (89)
19 d1e4va2 g.41.2.1 (A:122-156) M 22.5 15 0.0011 23.9 1.3 17 299-316 2-18 (35)
20 d2apob1 g.41.16.1 (B:403-457) 21.6 13 0.00092 26.8 0.8 26 37-62 3-28 (55)
21 d2apob1 g.41.16.1 (B:403-457) 21.4 13 0.00097 26.7 0.9 26 348-373 3-28 (55)
22 d1p91a_ c.66.1.33 (A:) rRNA me 20.2 16 0.0011 30.1 1.2 22 335-356 3-24 (268)
No 1
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=66.56 E-value=0.96 Score=30.41 Aligned_cols=24 Identities=33% Similarity=0.821 Sum_probs=19.7
Q ss_pred ceeEecCCCCC---CCcCCeeEEeCCC
Q psy7787 36 TLVRICDECNY---GSYQGRCVICGGP 59 (463)
Q Consensus 36 tkVRICDeCSf---Gs~~~RCIICG~p 59 (463)
.++++|..|+| |.--++|.+||.|
T Consensus 3 ~~~~vC~vCGyi~~g~~Pe~CPvCg~~ 29 (36)
T d1yuza2 3 DKFHLCPICGYIHKGEDFEKCPICFRP 29 (36)
T ss_dssp CCEEECSSSCCEEESSCCSBCTTTCCB
T ss_pred CCEEECCCCCCEeeCCCCCcCCCCCCc
Confidence 46899999998 5556799999986
No 2
>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}
Probab=64.95 E-value=0.86 Score=34.82 Aligned_cols=60 Identities=22% Similarity=0.394 Sum_probs=43.9
Q ss_pred CccccccCCCCccceeEecCCCCCC-CcCCeeEEeCCCC------ccccccchhhhhcccccccccceeeeeccccceeE
Q psy7787 334 GKCVICDSYVRPCTLVRICDECNYG-SYQGRCVICGGPG------VSDAYYCKECTIQEKDVSTVEPQFYELIGTKGCSI 406 (463)
Q Consensus 334 GKCPICDSyVRP~tkVRICdeCSfG-s~~~RCIICG~pG------vsdAYYC~ECvrLEKDRD~c~~~~~~l~~~~~~s~ 406 (463)
-.||.|..-+.+....+.|+.|..- .....|.-|+.+- ...-|.|..|- +||+.++..|
T Consensus 3 ~~CP~C~~eL~~~~~~~~C~~C~~~~~~~a~CPdC~~~Le~LkACGAvdYFC~~cn--------------~LiSKkrv~f 68 (71)
T d2jnea1 3 LHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHGH--------------GLISKKRVEF 68 (71)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCEEEEETTEEEEEETTTT--------------EEECTTTSEE
T ss_pred CcCCCccCcccccCCCEehhhhhhhheeEEeCCccccHHHHHHhccchhhhhccCC--------------ceeEeeeEEE
Confidence 4799999999998789999999854 4467788887643 24468898773 5666666655
Q ss_pred E
Q psy7787 407 V 407 (463)
Q Consensus 407 ~ 407 (463)
+
T Consensus 69 ~ 69 (71)
T d2jnea1 69 V 69 (71)
T ss_dssp E
T ss_pred E
Confidence 4
No 3
>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}
Probab=62.22 E-value=0.84 Score=34.88 Aligned_cols=60 Identities=20% Similarity=0.343 Sum_probs=45.8
Q ss_pred CccccccCCCCccceeEecCCCCCCCc-CCeeEEeCCCC------ccccccchhhhhcccccCCCccceeEeecccccee
Q psy7787 23 GKCVICDSYVRPCTLVRICDECNYGSY-QGRCVICGGPG------VSDAYYCKECTIQEKDVSTVEPQFYELIGTKGLCL 95 (463)
Q Consensus 23 GKCPICDSyVRP~tkVRICDeCSfGs~-~~RCIICG~pG------vsDAYYC~ECv~LEKDRDGc~~~~yel~~~~~l~~ 95 (463)
-.||.|..-+.+....+.|+.|..--. ..+|.-|+.+- ...-|.|..|- ||||.+|.-|
T Consensus 3 ~~CP~C~~eL~~~~~~~~C~~C~~~~~~~a~CPdC~~~Le~LkACGAvdYFC~~cn--------------~LiSKkrv~f 68 (71)
T d2jnea1 3 LHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHGH--------------GLISKKRVEF 68 (71)
T ss_dssp CBCSSSCSBEEEETTEEEETTTCCEEEEEEECTTTCSBCEEEEETTEEEEEETTTT--------------EEECTTTSEE
T ss_pred CcCCCccCcccccCCCEehhhhhhhheeEEeCCccccHHHHHHhccchhhhhccCC--------------ceeEeeeEEE
Confidence 479999999999878999999985433 67888888762 23469998873 6788877766
Q ss_pred c
Q psy7787 96 S 96 (463)
Q Consensus 96 s 96 (463)
+
T Consensus 69 ~ 69 (71)
T d2jnea1 69 V 69 (71)
T ss_dssp E
T ss_pred E
Confidence 5
No 4
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=61.07 E-value=1.3 Score=29.70 Aligned_cols=25 Identities=32% Similarity=0.773 Sum_probs=20.4
Q ss_pred ceeEecCCCCC---CCcCCeeEEeCCCC
Q psy7787 347 TLVRICDECNY---GSYQGRCVICGGPG 371 (463)
Q Consensus 347 tkVRICdeCSf---Gs~~~RCIICG~pG 371 (463)
.++++|..|+| |.--++|.+||.+.
T Consensus 3 ~~~~vC~vCGyi~~g~~Pe~CPvCg~~~ 30 (36)
T d1yuza2 3 DKFHLCPICGYIHKGEDFEKCPICFRPK 30 (36)
T ss_dssp CCEEECSSSCCEEESSCCSBCTTTCCBG
T ss_pred CCEEECCCCCCEeeCCCCCcCCCCCCcH
Confidence 46899999998 56678999999754
No 5
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=57.89 E-value=1.7 Score=29.24 Aligned_cols=25 Identities=36% Similarity=0.861 Sum_probs=20.0
Q ss_pred ceeEecCCCCC---CCcCCeeEEeCCCC
Q psy7787 347 TLVRICDECNY---GSYQGRCVICGGPG 371 (463)
Q Consensus 347 tkVRICdeCSf---Gs~~~RCIICG~pG 371 (463)
.++++|..|+| |.--++|.+||.+.
T Consensus 3 ~~~~~C~vCG~i~~g~~P~~CPvCg~~~ 30 (37)
T d1nnqa2 3 KKVYICPICGYTAVDEAPEYCPVCGAPK 30 (37)
T ss_dssp SCEEECTTTCCEEESCCCSBCTTTCCBG
T ss_pred CcEEECCCCCCEecCCCCCcCCCCCCcH
Confidence 57899999998 55568899999754
No 6
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=56.54 E-value=2.3 Score=38.13 Aligned_cols=38 Identities=21% Similarity=0.418 Sum_probs=28.5
Q ss_pred CCccccccCC-----CCc-----cceeEecCCCCCC--CcCCeeEEeCCC
Q psy7787 333 DGKCVICDSY-----VRP-----CTLVRICDECNYG--SYQGRCVICGGP 370 (463)
Q Consensus 333 DGKCPICDSy-----VRP-----~tkVRICdeCSfG--s~~~RCIICG~p 370 (463)
.|.||+|.|. ++. -.+.-.|.-|++. ..+-+|..||+.
T Consensus 164 ~~~CPvCGs~P~~s~l~~~~~~~G~R~l~C~~C~teW~~~R~~C~~Cg~~ 213 (290)
T d2fiya1 164 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 213 (290)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred CCcCCCCCCcchhheeeccCCCCCceEEECCCCCCccccccccCCCCCCC
Confidence 5789999986 332 2256689999975 557899999974
No 7
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=55.53 E-value=2.2 Score=38.25 Aligned_cols=58 Identities=22% Similarity=0.336 Sum_probs=39.3
Q ss_pred CCccccccCC-----CCc-----cceeEecCCCCCCC--cCCeeEEeCCCCc-----------------cccccchhhhh
Q psy7787 22 DGKCVICDSY-----VRP-----CTLVRICDECNYGS--YQGRCVICGGPGV-----------------SDAYYCKECTI 72 (463)
Q Consensus 22 DGKCPICDSy-----VRP-----~tkVRICDeCSfGs--~~~RCIICG~pGv-----------------sDAYYC~ECv~ 72 (463)
.|.||+|.|. ++. -.+.-.|.-|++.- .+-+|..||+... .-++.|.+|-.
T Consensus 164 ~~~CPvCGs~P~~s~l~~~~~~~G~R~l~C~~C~teW~~~R~~C~~Cg~~~~~~~~~~~~~~~~~~~~~~r~e~C~~C~~ 243 (290)
T d2fiya1 164 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQG 243 (290)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTTE
T ss_pred CCcCCCCCCcchhheeeccCCCCCceEEECCCCCCccccccccCCCCCCCCCcceEEEecCCCcccccceEEEEcCCcCC
Confidence 6899999996 332 22566899999743 3779999997531 13567999943
Q ss_pred ------cccccCC
Q psy7787 73 ------QEKDVST 79 (463)
Q Consensus 73 ------LEKDRDG 79 (463)
+|||.+.
T Consensus 244 Y~K~~~~~~~~~~ 256 (290)
T d2fiya1 244 YLKQFYLEFDRHA 256 (290)
T ss_dssp EEEEEETTTCTTC
T ss_pred eEEEeecccCCcc
Confidence 4555544
No 8
>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=44.54 E-value=3.2 Score=28.38 Aligned_cols=24 Identities=29% Similarity=0.672 Sum_probs=20.2
Q ss_pred ccccccC-CCCccceeEecCCCCCC
Q psy7787 24 KCVICDS-YVRPCTLVRICDECNYG 47 (463)
Q Consensus 24 KCPICDS-yVRP~tkVRICDeCSfG 47 (463)
.||-|.| |+-+.....||.||.|-
T Consensus 5 ~CP~C~seytYedg~l~vCPeC~hE 29 (38)
T d2akla2 5 PCPQCNSEYTYEDGALLVCPECAHE 29 (38)
T ss_dssp CCTTTCCCCCEECSSSEEETTTTEE
T ss_pred cCCCCCCcceEcCCCEEECCcccCc
Confidence 6899988 67788888999999874
No 9
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=42.58 E-value=10 Score=27.13 Aligned_cols=49 Identities=33% Similarity=0.727 Sum_probs=31.4
Q ss_pred ccccccCCCCc-cceeEecCCCCCCCcCCeeEEeCCCCc--------cccccchhhhhcccc
Q psy7787 24 KCVICDSYVRP-CTLVRICDECNYGSYQGRCVICGGPGV--------SDAYYCKECTIQEKD 76 (463)
Q Consensus 24 KCPICDSyVRP-~tkVRICDeCSfGs~~~RCIICG~pGv--------sDAYYC~ECv~LEKD 76 (463)
.|.||...... ...+-.||.|.. .+-..|+ .|.. ...|||..|...-+.
T Consensus 18 ~C~iC~~~~~~~~~~~v~Cd~C~~-~~H~~C~---~p~~~~~~~~~~~~~W~C~~C~~~~~~ 75 (88)
T d1weva_ 18 ACVVCRQMTVASGNQLVECQECHN-LYHQDCH---KPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp SCSSSCCCCCCTTCCEEECSSSCC-EEETTTS---SSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CccCCCCccCCCCCeEEEcCCCCC-ccccccC---CCcccccccccCCCeEECcccCchHhh
Confidence 58888876554 456677999985 4566663 3221 126999999754443
No 10
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=37.92 E-value=13 Score=26.57 Aligned_cols=48 Identities=33% Similarity=0.728 Sum_probs=30.4
Q ss_pred ccccccCCCCc-cceeEecCCCCCCCcCCeeEEeCCCCc--------cccccchhhhhccc
Q psy7787 335 KCVICDSYVRP-CTLVRICDECNYGSYQGRCVICGGPGV--------SDAYYCKECTIQEK 386 (463)
Q Consensus 335 KCPICDSyVRP-~tkVRICdeCSfGs~~~RCIICG~pGv--------sdAYYC~ECvrLEK 386 (463)
.|.||...... ...+-.||.|... +-..|+ .|.. ...|||..|...-+
T Consensus 18 ~C~iC~~~~~~~~~~~v~Cd~C~~~-~H~~C~---~p~~~~~~~~~~~~~W~C~~C~~~~~ 74 (88)
T d1weva_ 18 ACVVCRQMTVASGNQLVECQECHNL-YHQDCH---KPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp SCSSSCCCCCCTTCCEEECSSSCCE-EETTTS---SSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CccCCCCccCCCCCeEEEcCCCCCc-cccccC---CCcccccccccCCCeEECcccCchHh
Confidence 47888776554 4567779999854 455552 2221 12699999975433
No 11
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=37.08 E-value=9.5 Score=25.95 Aligned_cols=48 Identities=25% Similarity=0.605 Sum_probs=31.7
Q ss_pred CCccccccCCCCccceeEecCCCCCCCcCCeeEEeCCC----Cccccccchhhhh
Q psy7787 22 DGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGP----GVSDAYYCKECTI 72 (463)
Q Consensus 22 DGKCPICDSyVRP~tkVRICDeCSfGs~~~RCIICG~p----GvsDAYYC~ECv~ 72 (463)
+.+|.+|.....+....-.||.|+. -+-..|+ |-+ ...+-|||..|..
T Consensus 6 ~~~C~~C~~~~~~~~~~I~Cd~C~~-w~H~~C~--~~~~~~~~~~~~w~C~~C~~ 57 (64)
T d1we9a_ 6 SGQCGACGESYAADEFWICCDLCEM-WFHGKCV--KITPARAEHIKQYKCPSCSN 57 (64)
T ss_dssp CCCCSSSCCCCCSSSCEEECSSSCC-EEETTTT--TCCTTGGGGCSSCCCHHHHT
T ss_pred CCcCcCcCCCCCCCCCEEEcCCCCc-cCCcccC--CcChHHCCCCCeEECcCCcC
Confidence 5689999887766555447999994 3455555 222 1224699999964
No 12
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.21 E-value=7.6 Score=25.47 Aligned_cols=45 Identities=27% Similarity=0.619 Sum_probs=27.0
Q ss_pred ccccccCCCCccceeEecCCCCCCCcCCeeEEeCCCCc-cccccchhh
Q psy7787 335 KCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGV-SDAYYCKEC 381 (463)
Q Consensus 335 KCPICDSyVRP~tkVRICdeCSfGs~~~RCIICG~pGv-sdAYYC~EC 381 (463)
||.||...-.+... -.||.|... +-..|+-=....+ ...|+|.+|
T Consensus 2 ~C~vC~~~~~~~~~-i~Cd~C~~~-~H~~C~~p~~~~~p~~~W~C~~C 47 (51)
T d1f62a_ 2 RCKVCRKKGEDDKL-ILCDECNKA-FHLFCLRPALYEVPDGEWQCPAC 47 (51)
T ss_dssp CCTTTCCSSCCSCC-EECTTTCCE-ECHHHHCTTCCSCCSSCCSCTTT
T ss_pred CCcCcCCCCCCCCE-EEcCCCCCC-CCCCCCCCCCCcCCCCCEECcCC
Confidence 78888876666554 469999844 3444542111111 346889888
No 13
>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.28 E-value=15 Score=25.97 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=15.5
Q ss_pred CccccccCCC---CccceeEecCCCCC
Q psy7787 334 GKCVICDSYV---RPCTLVRICDECNY 357 (463)
Q Consensus 334 GKCPICDSyV---RP~tkVRICdeCSf 357 (463)
-|||.|.|.. ...+--.||.+|+.
T Consensus 12 ~~Cp~Cgs~~ii~D~~~Ge~vC~~CG~ 38 (58)
T d1dl6a_ 12 VTCPNHPDAILVEDYRAGDMICPECGL 38 (58)
T ss_dssp CSBTTBSSSCCEECSSSCCEECTTTCC
T ss_pred cCCCCCCCCCEEEECCCCcEecccCCC
Confidence 3678887763 34556677777764
No 14
>d1k3xa3 g.39.1.8 (A:223-262) Endonuclease VIII {Escherichia coli [TaxId: 562]}
Probab=27.95 E-value=6.2 Score=26.28 Aligned_cols=25 Identities=24% Similarity=0.677 Sum_probs=15.3
Q ss_pred CCCcCCeeEEeCCC------Cccccccchhh
Q psy7787 46 YGSYQGRCVICGGP------GVSDAYYCKEC 70 (463)
Q Consensus 46 fGs~~~RCIICG~p------GvsDAYYC~EC 70 (463)
||..+..|..||.+ +.-..|||..|
T Consensus 8 YgR~g~pC~~C~~~I~~~~~~gR~t~~Cp~C 38 (40)
T d1k3xa3 8 FHRDGEPCERCGSIIEKTTLSSRPFYWCPGC 38 (40)
T ss_dssp TTCTTSBCTTTCCBCEEEEETTEEEEECTTT
T ss_pred eCCCCCccCcCCCEEEEEEECCCCCEEChhh
Confidence 45555666667654 22347888776
No 15
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}
Probab=25.07 E-value=11 Score=26.96 Aligned_cols=47 Identities=34% Similarity=0.748 Sum_probs=25.5
Q ss_pred ccccCCCccccccCCCCccceeEecCCCCCCCc-----------CCeeEEeCCCCccccccchhh
Q psy7787 17 LCEKCDGKCVICDSYVRPCTLVRICDECNYGSY-----------QGRCVICGGPGVSDAYYCKEC 70 (463)
Q Consensus 17 LCeKCDGKCPICDSyVRP~tkVRICDeCSfGs~-----------~~RCIICG~pGvsDAYYC~EC 70 (463)
.|+.|+|. =.++.+.+..|+.|+ |+. +..|-.|++.|......|.+|
T Consensus 13 ~C~~C~G~------G~~~g~~~~~C~~C~-G~G~v~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C 70 (79)
T d1exka_ 13 ECDVCHGS------GAKPGTQPQTCPTCH-GSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKC 70 (79)
T ss_dssp ECGGGTTT------SBCSSSCCEECTTTT-TSSEEEEEETTEEEEEECTTTTTSSEECSSBCGGG
T ss_pred cCCCCcCc------ccCCCccceeCCCcc-ceeEEEEecccceeeEECcccCcceeECCCCCCCC
Confidence 45566553 123444555666665 221 224666777665555667777
No 16
>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Probab=24.18 E-value=14 Score=24.36 Aligned_cols=18 Identities=28% Similarity=0.619 Sum_probs=10.5
Q ss_pred cccccccccccceeeeecc
Q psy7787 298 SRRSCPLSLGKILKLRLEP 316 (463)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~ 316 (463)
|||.||-+ |.+..+-..|
T Consensus 1 sR~vc~~c-G~~Yh~~~~p 18 (37)
T d2ak3a2 1 ARWIHPGS-GRVYNIEFNP 18 (37)
T ss_dssp CEEEETTT-TEEEETTTBC
T ss_pred CceeeCCc-CChhhhccCC
Confidence 56666643 6666655555
No 17
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=23.67 E-value=7.4 Score=29.33 Aligned_cols=21 Identities=33% Similarity=0.692 Sum_probs=17.6
Q ss_pred CCeeEEeCCCCccccccchhh
Q psy7787 50 QGRCVICGGPGVSDAYYCKEC 70 (463)
Q Consensus 50 ~~RCIICG~pGvsDAYYC~EC 70 (463)
..+|..|+.++..-.|+|.+|
T Consensus 47 ~~~C~~C~~~~~g~~Y~C~~C 67 (89)
T d1v5na_ 47 VYTCDKCEEEGTIWSYHCDEC 67 (89)
T ss_dssp SCCCTTTSCCCCSCEEECTTT
T ss_pred CCEeCCCCCCcCCcEeEeccC
Confidence 357999998877779999988
No 18
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=23.55 E-value=7.6 Score=29.26 Aligned_cols=20 Identities=35% Similarity=0.752 Sum_probs=15.7
Q ss_pred CeeEEeCCCCccccccchhh
Q psy7787 362 GRCVICGGPGVSDAYYCKEC 381 (463)
Q Consensus 362 ~RCIICG~pGvsdAYYC~EC 381 (463)
.+|..|+.++..-.|+|.+|
T Consensus 48 ~~C~~C~~~~~g~~Y~C~~C 67 (89)
T d1v5na_ 48 YTCDKCEEEGTIWSYHCDEC 67 (89)
T ss_dssp CCCTTTSCCCCSCEEECTTT
T ss_pred CEeCCCCCCcCCcEeEeccC
Confidence 46778887766778999987
No 19
>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]}
Probab=22.52 E-value=15 Score=23.87 Aligned_cols=17 Identities=24% Similarity=0.661 Sum_probs=10.5
Q ss_pred ccccccccccceeeeecc
Q psy7787 299 RRSCPLSLGKILKLRLEP 316 (463)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~ 316 (463)
||.|| +=|.+..+-..|
T Consensus 2 Rr~c~-~cG~~Yh~~~~P 18 (35)
T d1e4va2 2 RRVHA-PSGRVYHVKFNP 18 (35)
T ss_dssp EEEET-TTTEEEETTTBC
T ss_pred ccCCc-CcCChhhhccCc
Confidence 56666 446666666665
No 20
>d2apob1 g.41.16.1 (B:403-457) Ribosome biogenesis protein Nop10 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=21.63 E-value=13 Score=26.84 Aligned_cols=26 Identities=23% Similarity=0.571 Sum_probs=20.6
Q ss_pred eeEecCCCCCCCcCCeeEEeCCCCcc
Q psy7787 37 LVRICDECNYGSYQGRCVICGGPGVS 62 (463)
Q Consensus 37 kVRICDeCSfGs~~~RCIICG~pGvs 62 (463)
+.+-|..|+.=+..+.|..||++..+
T Consensus 3 klrkC~~C~~YTL~~~CP~CG~~t~~ 28 (55)
T d2apob1 3 RMKKCPKCGLYTLKEICPKCGEKTVI 28 (55)
T ss_dssp CCEECTTTCCEESSSBCSSSCSBCBC
T ss_pred ceeeCCcccceeccccCcCCCCccCc
Confidence 45778888888889999999987544
No 21
>d2apob1 g.41.16.1 (B:403-457) Ribosome biogenesis protein Nop10 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=21.37 E-value=13 Score=26.72 Aligned_cols=26 Identities=23% Similarity=0.571 Sum_probs=20.2
Q ss_pred eeEecCCCCCCCcCCeeEEeCCCCcc
Q psy7787 348 LVRICDECNYGSYQGRCVICGGPGVS 373 (463)
Q Consensus 348 kVRICdeCSfGs~~~RCIICG~pGvs 373 (463)
+.+-|..|+.=.+.+.|..||++..+
T Consensus 3 klrkC~~C~~YTL~~~CP~CG~~t~~ 28 (55)
T d2apob1 3 RMKKCPKCGLYTLKEICPKCGEKTVI 28 (55)
T ss_dssp CCEECTTTCCEESSSBCSSSCSBCBC
T ss_pred ceeeCCcccceeccccCcCCCCccCc
Confidence 45678888887889999999985543
No 22
>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}
Probab=20.17 E-value=16 Score=30.14 Aligned_cols=22 Identities=18% Similarity=0.442 Sum_probs=16.9
Q ss_pred ccccccCCCCccceeEecCCCC
Q psy7787 335 KCVICDSYVRPCTLVRICDECN 356 (463)
Q Consensus 335 KCPICDSyVRP~tkVRICdeCS 356 (463)
+||+|.+........-+|..|.
T Consensus 3 ~CP~C~~~L~~~~~~l~C~~~h 24 (268)
T d1p91a_ 3 SCPLCHQPLSREKNSYICPQRH 24 (268)
T ss_dssp BCTTTCCBCEEETTEEECTTCC
T ss_pred cCCCCChhhhcCCCeEECCCCC
Confidence 7999998877666667787773
Done!