RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7787
         (463 letters)



>d1afpa_ g.26.1.1 (A:) Antifungal protein (AGAFP) {Mold
          (Aspergillus giganteus) [TaxId: 5060]}
          Length = 51

 Score = 26.2 bits (57), Expect = 1.5
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 23 GKCVICDSYVRPCTLVRICDECNYGSYQGRC 53
          GK  IC  YV+ C   R   +C + SY+G+C
Sbjct: 21 GKTAICKCYVKKCP--RDGAKCEFDSYKGKC 49



 Score = 26.2 bits (57), Expect = 1.5
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 334 GKCVICDSYVRPCTLVRICDECNYGSYQGRC 364
           GK  IC  YV+ C   R   +C + SY+G+C
Sbjct: 21  GKTAICKCYVKKCP--RDGAKCEFDSYKGKC 49


>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 61

 Score = 24.9 bits (54), Expect = 4.7
 Identities = 9/50 (18%), Positives = 13/50 (26%), Gaps = 1/50 (2%)

Query: 22 DGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECT 71
          D     C        L+  CD C    +            +  + C  CT
Sbjct: 6  DHHMEFCRVCKDGGELL-CCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 54



 Score = 24.9 bits (54), Expect = 4.7
 Identities = 9/50 (18%), Positives = 13/50 (26%), Gaps = 1/50 (2%)

Query: 333 DGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECT 382
           D     C        L+  CD C    +            +  + C  CT
Sbjct: 6   DHHMEFCRVCKDGGELL-CCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCT 54


>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
          (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 64

 Score = 24.6 bits (53), Expect = 5.7
 Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 9/55 (16%)

Query: 22 DGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDA-----YYCKECT 71
           G+C  C            CD C    + G+CV       + A     Y C  C+
Sbjct: 6  SGQCGACGESYAADEFWICCDLCEMW-FHGKCV---KITPARAEHIKQYKCPSCS 56



 Score = 24.6 bits (53), Expect = 5.7
 Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 9/55 (16%)

Query: 333 DGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDA-----YYCKECT 382
            G+C  C            CD C    + G+CV       + A     Y C  C+
Sbjct: 6   SGQCGACGESYAADEFWICCDLCEMW-FHGKCV---KITPARAEHIKQYKCPSCS 56


>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 79

 Score = 25.0 bits (54), Expect = 7.5
 Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 3/49 (6%)

Query: 25 CVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVS--DAYYCKECT 71
            +C         +  C  C    + G CV          D Y+C +C 
Sbjct: 14 YCLCRQPYNVNHFMIECGLCQDW-FHGSCVGIEEENAVDIDIYHCPDCE 61



 Score = 25.0 bits (54), Expect = 7.5
 Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 3/49 (6%)

Query: 336 CVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVS--DAYYCKECT 382
             +C         +  C  C    + G CV          D Y+C +C 
Sbjct: 14  YCLCRQPYNVNHFMIECGLCQDW-FHGSCVGIEEENAVDIDIYHCPDCE 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.445 

Gapped
Lambda     K      H
   0.267   0.0429    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,785,945
Number of extensions: 88812
Number of successful extensions: 335
Number of sequences better than 10.0: 1
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 49
Length of query: 463
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 375
Effective length of database: 1,199,356
Effective search space: 449758500
Effective search space used: 449758500
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.7 bits)